BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig112 (2024 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,887,211 Number of Sequences: 14420 Number of extensions: 235861 Number of successful extensions: 609 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 575 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 609 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 965108980 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig113 (2418 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_690788.1|ORF4 39 0.002 ref|NP_899307.1|hypothetical protein 36 0.017 ref|NP_690787.1|immunity repressor 36 0.022 ref|NP_076805.1|repressor 35 0.037 ref|YP_164385.1|cro 34 0.082 ref|NP_061595.1|repressor 33 0.14 ref|NP_818390.1|gp91 33 0.18 ref|NP_071804.1|unknown 32 0.24 >ref|NP_690788.1|ORF4 Length = 92 Score = 39.3 bits (90), Expect = 0.002 Identities = 22/56 (39%), Positives = 32/56 (57%) Frame = -3 Query: 1960 KFGDFIAEKRKQKEISLRKMAELLDISPAYWSDIEKGRRNPPNINKIEEIAKILGL 1793 K G I +KRK+K + +MA+ L +S Y SDIE G R P+ + IA ++ L Sbjct: 8 KLGALIKDKRKEKHLKQTEMAKALGMSRTYLSDIENG-RYLPSTKTLSRIAILINL 62 >ref|NP_899307.1|hypothetical protein Length = 554 Score = 36.2 bits (82), Expect = 0.017 Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 4/98 (4%) Frame = -2 Query: 1610 SLR*ERVGRGILMNDYFKGMIEEQFY----QQIFDTLEDEIMNNYSEYDLTLRARDVIEV 1443 S+R +++G G + + K + ++ Y +I + ++E+ ++S + +T D ++ Sbjct: 106 SMRIQKIGSGKMFDMRVKTLFKKLRYGCETTKIMNVGDNEMAEDFSFFVITKPGYDADKL 165 Query: 1442 LEATLDNIEILRVNNIKQDDEEVSFDILVNCDIEIGDY 1329 +EAT + I IL K+ D I+V D DY Sbjct: 166 VEATEETINILAAKMAKETDISSKKTIIVTADAGYDDY 203 >ref|NP_690787.1|immunity repressor Length = 144 Score = 35.8 bits (81), Expect = 0.022 Identities = 18/54 (33%), Positives = 36/54 (66%) Frame = -3 Query: 1954 GDFIAEKRKQKEISLRKMAELLDISPAYWSDIEKGRRNPPNINKIEEIAKILGL 1793 G I RK+++++ ++AE ++S +Y +DIE+ R N P+++ +E +A LG+ Sbjct: 4 GQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYN-PSLSTLEAVAGALGI 56 >ref|NP_076805.1|repressor Length = 122 Score = 35.0 bits (79), Expect = 0.037 Identities = 24/80 (30%), Positives = 37/80 (46%) Frame = -3 Query: 1945 IAEKRKQKEISLRKMAELLDISPAYWSDIEKGRRNPPNINKIEEIAKILGLTPEETDYMI 1766 I E QK S+RK+ E L I + +N PN +KI+ +AK ++ DY++ Sbjct: 7 IKELAAQKHTSIRKIEEHLGYGNG---TIRRWNKNKPNYDKIQAVAKYFNVS---VDYLL 60 Query: 1765 DIASEDRDEIPMDLPDYIKE 1706 + P+DL I E Sbjct: 61 GNEELKKTNKPVDLKKVISE 80 >ref|YP_164385.1|cro Length = 60 Score = 33.9 bits (76), Expect = 0.082 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Frame = -3 Query: 1969 MSSKFGDFIAEKRKQKEISLRKMAELLDISPAYWSDIEKGRRNPPNI-NKIEEIAKILGL 1793 MS + G + + ++++S R++A+++ IS AY SDI GR+ I+ I K+L + Sbjct: 1 MSEELGIKVRSELFKRKMSQRELAKMIGISEAYLSDIINGRKTGAKAQGHIKHIRKVLSI 60 >ref|NP_061595.1|repressor Length = 236 Score = 33.1 bits (74), Expect = 0.14 Identities = 18/67 (26%), Positives = 38/67 (56%) Frame = -3 Query: 1963 SKFGDFIAEKRKQKEISLRKMAELLDISPAYWSDIEKGRRNPPNINKIEEIAKILGLTPE 1784 S F + ++++S ++AEL+D++ + KG R+ P ++K+ EIA + G+ P Sbjct: 2 SSFSSNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGIRS-PKLDKLPEIANVFGVKPL 60 Query: 1783 ETDYMID 1763 + + +D Sbjct: 61 DLIHDMD 67 >ref|NP_818390.1|gp91 Length = 135 Score = 32.7 bits (73), Expect = 0.18 Identities = 20/54 (37%), Positives = 29/54 (53%) Frame = -3 Query: 1780 TDYMIDIASEDRDEIPMDLPDYIKESGLARTALRKARKIESEGKSDITEKAWIE 1619 TDY ID A + + +D+PD + E L R AL R +E+E KAW++ Sbjct: 4 TDYAIDNAIQVLQGLGLDVPDELLE--LRRRALTLQRWLEAEADYKRRVKAWLD 55 >ref|NP_071804.1|unknown Length = 100 Score = 32.3 bits (72), Expect = 0.24 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Frame = +3 Query: 9 KGLNFI*FLYYLRCFFSFLFINRLTDFFNSYHCRLIY----IWTYNRTNI 146 K LNF+ F+Y L C FSF F+ F S LIY I TY NI Sbjct: 49 KSLNFLEFMYMLVCIFSFSFM------FYSRCAYLIYLSSQITTYQNNNI 92 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,319,463 Number of Sequences: 14420 Number of extensions: 188708 Number of successful extensions: 546 Number of sequences better than 0.5: 8 Number of HSP's better than 0.5 without gapping: 518 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 546 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1171188310 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig114 (2140 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_690635.1|DNA polymerase 32 0.36 >ref|NP_690635.1|DNA polymerase Length = 572 Score = 31.6 bits (70), Expect = 0.36 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 3/74 (4%) Frame = -1 Query: 1120 EREEQYRYLETANRY---IKEGKVKSIRLSTRPDYINEEILDYLEKYSVKTIELGVQSLD 950 E++EQY R+ +KEG + +I++ P + E YL+ + +EL + ++D Sbjct: 273 EKDEQYPLYIQRIRFEFELKEGYIPTIQIKKNPFFKGNE---YLKNSGAEPVELYLTNVD 329 Query: 949 REVLEKSCRGHSVE 908 E++++ ++VE Sbjct: 330 LELIQEHYEMYNVE 343 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,202,325 Number of Sequences: 14420 Number of extensions: 203155 Number of successful extensions: 506 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 487 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 506 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 1028340258 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig115 (2225 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_050656.1|Com 35 0.044 ref|NP_775223.1|hypothetical protein 32 0.22 >ref|NP_050656.1|Com Length = 62 Score = 34.7 bits (78), Expect = 0.044 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%) Frame = -2 Query: 532 TVRCPHCNHRVFDADYAD-VEIKCPVCRK------VFEVKLEKKAG*KVNKSGTEPQRER 374 ++RC +CN +F AD D +EI+CP C++ E EK G +RE+ Sbjct: 3 SIRCKNCNKLLFKADSFDHIEIRCPRCKRHIIMLNACEHPTEKHCG----------KREK 52 Query: 373 MTH 365 +TH Sbjct: 53 ITH 55 >ref|NP_775223.1|hypothetical protein Length = 150 Score = 32.3 bits (72), Expect = 0.22 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%) Frame = -1 Query: 1799 HTYHVGENRVLVHNANKYVKGTSSTLKNLDSLDDFINDPSKL---KNLTPDELYN---YL 1638 +TY G +V ++A K + LK+L DDF D + +NL D L+N YL Sbjct: 56 YTYLSGHGKVERYSAKKQQR---VVLKDLSLYDDFYIDRHETFDPRNLLRDSLFNLHYYL 112 Query: 1637 KNNG 1626 KNNG Sbjct: 113 KNNG 116 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,489,328 Number of Sequences: 14420 Number of extensions: 212741 Number of successful extensions: 669 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 615 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 669 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1065616406 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig117 (4518 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,334,654 Number of Sequences: 14420 Number of extensions: 488776 Number of successful extensions: 1280 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1278 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2216332705 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig121 (2691 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,896,553 Number of Sequences: 14420 Number of extensions: 251023 Number of successful extensions: 584 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 560 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 584 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1308112800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig124 (2534 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,562,296 Number of Sequences: 14420 Number of extensions: 247199 Number of successful extensions: 681 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 652 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 681 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1223085468 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig125 (3547 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_803346.1|tail fiber protein 35 0.042 ref|NP_075512.2|hypothetical protein 34 0.12 ref|NP_438164.1|hypothetical protein 33 0.27 ref|NP_795600.1|hypothetical protein 33 0.27 ref|NP_046874.1|putative DNA primase 33 0.27 ref|NP_490637.1|hypothetical protein 32 0.35 ref|NP_047955.2|gp9a 32 0.46 >ref|NP_803346.1|tail fiber protein Length = 2066 Score = 35.4 bits (80), Expect = 0.042 Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 12/175 (6%) Frame = -3 Query: 521 FFDNDDNKIGQN------KSIAAAYR-LWQFGFRNIRIINTFKE-MGKDITDCSVKLHDD 366 +F N N +G+ K I A R L +F I +FKE KD+ D L DD Sbjct: 813 WFRNGINGLGETIKFFGGKIIGGAVRKLGEFKNYLGSIGKSFKEKFSKDMKDGYKSLSDD 872 Query: 365 DMLRLFINHWEKQAYSFAPASNE--DLSALLKTGLYSESEILFIDPRDVERIISFGEMLN 192 D+L++ +N ++ + AS + D +L G+ E+E + +E+ + + E N Sbjct: 873 DLLKVGVNKFKGFMQTMGTASKKASDTVKVLGKGVSKETE------KALEKYVHYSEENN 926 Query: 191 KYLDFKNMTYQQL--KLLKKLCSFKEDEIKILLSLSTKDFLDVQNTNEQSCHKEQ 33 + ++ + Q+ KKL +KI LS +++ N++ K Q Sbjct: 927 RIMEKVRLNSGQITEDKAKKL-------LKIEADLSNNLIAEIEKRNKKELEKTQ 974 >ref|NP_075512.2|hypothetical protein Length = 2067 Score = 33.9 bits (76), Expect = 0.12 Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 12/175 (6%) Frame = -3 Query: 521 FFDNDDNKIGQN------KSIAAAYR-LWQFGFRNIRIINTFKE-MGKDITDCSVKLHDD 366 +F N N +G+ K I A R L +F I +FKE KD+ D L DD Sbjct: 813 WFRNGINGLGETIKFFGGKIIGGAVRKLGEFKNYLGSIGKSFKEKFSKDMKDGYKSLSDD 872 Query: 365 DMLRLFINHWEKQAYSFAPASNE--DLSALLKTGLYSESEILFIDPRDVERIISFGEMLN 192 D+L++ +N ++ + AS + D +L G+ E+E + +E+ + + E + Sbjct: 873 DLLKVGVNKFKGFMQTMGTASKKASDTVKVLGKGVSKETE------KALEKYVHYSEENS 926 Query: 191 KYLDFKNMTYQQLK--LLKKLCSFKEDEIKILLSLSTKDFLDVQNTNEQSCHKEQ 33 + ++ + Q+ KKL +KI LS +++ N++ K Q Sbjct: 927 RIMEKVRLNSGQISEDKAKKL-------LKIETDLSNNLIAEIEKRNKKELEKTQ 974 >ref|NP_438164.1|hypothetical protein Length = 174 Score = 32.7 bits (73), Expect = 0.27 Identities = 16/70 (22%), Positives = 35/70 (50%) Frame = -3 Query: 1202 TNKPGFILESLDLEMTIRHLKAQNIIVNGITDYDEAVQVAKNSKLIKDFTKNADKLNSVD 1023 +NK G+ + +L L+ + + +NI+ NG ++E+++ K ++ D + + Sbjct: 14 SNKKGYKINNLKLQKLLYFVNVRNILENGAPLFEESMEKWKYGPVVPDVYHEYKRFGAFS 73 Query: 1022 KLTDYMSKKY 993 TD M +Y Sbjct: 74 ISTDEMIMEY 83 >ref|NP_795600.1|hypothetical protein Length = 174 Score = 32.7 bits (73), Expect = 0.27 Identities = 16/70 (22%), Positives = 35/70 (50%) Frame = -3 Query: 1202 TNKPGFILESLDLEMTIRHLKAQNIIVNGITDYDEAVQVAKNSKLIKDFTKNADKLNSVD 1023 +NK G+ + +L L+ + + +NI+ NG ++E+++ K ++ D + + Sbjct: 14 SNKKGYKINNLKLQKLLYFVNVRNILENGAPLFEESMEKWKYGPVVPDVYHEYKRFGAFS 73 Query: 1022 KLTDYMSKKY 993 TD M +Y Sbjct: 74 ISTDEMIMEY 83 >ref|NP_046874.1|putative DNA primase Length = 129 Score = 32.7 bits (73), Expect = 0.27 Identities = 15/51 (29%), Positives = 27/51 (52%) Frame = -3 Query: 1628 YSKGRFVCPFHHGADNPTSLSMNDNKRCFHCNACGKSGTYLEFIMYMQNIS 1476 Y + +CPFH D S +++ + + F+C ACG G + I + + +S Sbjct: 24 YEWNKCLCPFH--GDETPSAAVSYDLQGFNCLACGVRGDVISIIRHEEEVS 72 >ref|NP_490637.1|hypothetical protein Length = 895 Score = 32.3 bits (72), Expect = 0.35 Identities = 16/30 (53%), Positives = 18/30 (60%) Frame = -3 Query: 674 INTLWITEGIADAIKLSSMGYDAVSLGQAN 585 + LWI EGI DAI L G DAVS +N Sbjct: 166 VKELWIVEGIFDAIALLHHGIDAVSAMSSN 195 >ref|NP_047955.2|gp9a Length = 805 Score = 32.0 bits (71), Expect = 0.46 Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 2/148 (1%) Frame = -3 Query: 1013 DYMSKKYNIDIDTALKYGLIFFDKSSQHQL--YYSDFFMLNNRVLFPVRDHETGIIVGYQ 840 DY + ++ +D+ A GL + + + S F R++ P++ + G+ G Q Sbjct: 110 DYAADRFGLDVAQAEALGLRYSPDGQGYDWPDFVSTSFARFPRMVVPLKGFD-GVTRGAQ 168 Query: 839 CRRTDLSAPRHYKYLNITDYQDNLITNENGTTYRDFVPFKVGNFLFNLYELKGKCINTLW 660 R DLS ++L++ N +G + + F+ G+ + + + Sbjct: 169 GR--DLSGKCPGRWLSLK--------NPDGQRWAPYGVFR-GDAGYGV----------VL 207 Query: 659 ITEGIADAIKLSSMGYDAVSLGQANLTD 576 ITEG DA+ S+GYDAV++ A+L + Sbjct: 208 ITEGPGDALTAVSVGYDAVAVRGASLVN 235 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,699,678 Number of Sequences: 14420 Number of extensions: 329324 Number of successful extensions: 850 Number of sequences better than 0.5: 7 Number of HSP's better than 0.5 without gapping: 787 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 850 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1739623983 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig126 (2401 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_150145.1|putative DNA methylase 78 5e-15 ref|NP_878240.1|Mth 75 3e-14 ref|NP_665998.1|putative C5-cytosine methyltransferase 72 3e-13 ref|NP_839905.1|putative methylase 71 6e-13 ref|NP_818425.1|gp127 70 1e-12 ref|NP_046694.1|modification methylase 65 3e-11 ref|NP_813725.1|gp9.1 50 1e-06 ref|NP_817858.1|gp7 49 2e-06 ref|NP_818053.1|gp80 48 5e-06 ref|NP_945098.1|gp67 37 0.010 ref|YP_006537.1|Dmt 33 0.14 >ref|NP_150145.1|putative DNA methylase Length = 385 Score = 77.8 bits (190), Expect = 5e-15 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 3/170 (1%) Frame = -3 Query: 2360 ELFCGPGGLAYGAKTAEIENKEYRIIHKWANDYDRDTCDTYIHNICPDNPESVICQDVRK 2181 +LF G GG G ++A E + I K+A + DT + D+ Sbjct: 5 DLFAGIGGFRIGMESAGHECIGFCEIDKFARASYKAIHDT---------KGEIELHDITT 55 Query: 2180 LNIDSLQPI---DALAFGFPCNDFSVVGEQKGFNGEYGPLYTYGVKVLKKFKPMWFLAEN 2010 ++ D+++ I D + GFPC FS+ G ++GF G L+ + KP + EN Sbjct: 56 VSDDTIRGIGHVDVICGGFPCQAFSIAGNRRGFEDTRGTLFFEIARFASILKPRYLFLEN 115 Query: 2009 VGGLKSANDGGAFKKILNDLGEAGYRLYPHLYKFEEYGIPQARHRIIIIG 1860 V GL + + G F+ IL+ L E GY + + + +G+PQ R R+ IIG Sbjct: 116 VKGLLNHDRGNTFEVILSALDELGYDVEWQVLNSKNFGVPQNRERVFIIG 165 >ref|NP_878240.1|Mth Length = 312 Score = 75.1 bits (183), Expect = 3e-14 Identities = 90/333 (27%), Positives = 133/333 (39%), Gaps = 6/333 (1%) Frame = -3 Query: 2357 LFCGPGGLAYGAKTAEIENKEYRIIHKWANDYDRDTCDTYIHNICPDNPES-VICQDVRK 2181 LF G GG A + N + ++ AND D Y+ N +PE+ I D+ Sbjct: 7 LFSGCGG-----SDAGVLNAGFNVL--MANDILPYARDVYLEN----HPETDYILGDISG 55 Query: 2180 LNIDSLQPIDALAFGFPCNDFSVVGEQKGFNGEYGPLYTYGVKVLKKFKPMWFLAENVGG 2001 L S + L +PC FS G +K + + LY + L K KP F+ ENV G Sbjct: 56 LQ--SFPSAELLIGCYPCQGFSQGGARKA-DRKINTLYLEFARALSKIKPKAFIVENVSG 112 Query: 2000 LKSANDGGAFKKILNDLGEAGYRLYPHLYKFEEYGIPQARHRIIIIGIRKDLPYEFKVPS 1821 + N K EAGY + + YG+ Q R RI I+GIRKD +K P Sbjct: 113 MVRRNFEHLLKDQFKVFEEAGYTVSSQILNASHYGVSQDRKRIFIVGIRKDYGITYKFPK 172 Query: 1820 PVPYKDLD--NTCRTALEVPPIPKDAPNNELTRQSAIVTERLKYIRPGENAFTADLPEHL 1647 P L +T R A+ P+ + ++ + + P H+ Sbjct: 173 PTHGDGLTPYSTIRDAIGHMPVWPVGEFYDADFHWYYLSRNRRQDWDQISKTIVANPRHM 232 Query: 1646 RLNVKGAKISQIYKRLDPNRPAYTVTGSGGGGTHIYHYAEPRALTNRERARLQTFPDDYL 1467 L+ IS ++L P++ +T A R + RE A LQ F D Sbjct: 233 PLH----PISPTLEKLGPDKWQFTSD------------APARRFSYREAAILQGFGDLIF 276 Query: 1466 FKGSKESVRRQ---IGMAVPAKGAKIIFEAVLR 1377 + + S+ + +G AVP +FEAV R Sbjct: 277 PETERASINMKYTVVGNAVPPP----LFEAVAR 305 >ref|NP_665998.1|putative C5-cytosine methyltransferase Length = 283 Score = 72.0 bits (175), Expect = 3e-13 Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 15/186 (8%) Frame = -3 Query: 2357 LFCGPGGLAYGAKTAEIENKEYRIIHKWANDYDRDTCDTYIHNIC-------PDNPESVI 2199 LF G GG G A +N A + ++D DTY N+ D P ++ Sbjct: 34 LFSGIGGFDLGFSRAGFKNLV-------AVEANQDAADTYRANLINDCENYGQDEPPVLM 86 Query: 2198 CQDVRKLNIDSLQP--------IDALAFGFPCNDFSVVGEQKGFNGEYGPLYTYGVKVLK 2043 +D+ K+ + + A++ G PC FS +G+++ + LY V+++ Sbjct: 87 ERDITKVATWEILEAAGIGVGQLTAVSGGPPCQGFSHIGKREE-DDPRNELYLEMVRIVH 145 Query: 2042 KFKPMWFLAENVGGLKSANDGGAFKKILNDLGEAGYRLYPHLYKFEEYGIPQARHRIIII 1863 + KP++F+ ENV GL + +DG A ++ + GY + + +YG+PQ R R+++I Sbjct: 146 QAKPVFFVMENVPGLATMHDGEAIMEVCENFEAGGYEVTWDKHDAADYGVPQHRERVLVI 205 Query: 1862 GIRKDL 1845 G R D+ Sbjct: 206 GKRVDV 211 >ref|NP_839905.1|putative methylase Length = 185 Score = 70.9 bits (172), Expect = 6e-13 Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 5/172 (2%) Frame = -3 Query: 2360 ELFCGPGGLAYGAKTAEIENKEYRIIHKWANDYDRDTCDTY----IHNICPDNPESVICQ 2193 +LF G GG G + A E + I K+A + +T H+I +V + Sbjct: 5 DLFAGIGGFRLGLEQAGHECVGFCEIDKFARQSYKAIHNTEGEREYHDIT-----TVSNE 59 Query: 2192 DVRKLNIDSLQPIDALAFGFPCNDFSVVGEQKGFNGEY-GPLYTYGVKVLKKFKPMWFLA 2016 + R L ++ + GFPC FS+ G++KGF E G L+ + ++ KP Sbjct: 60 EWRTLR----GTVELICGGFPCQAFSIAGKRKGFLDETRGTLFFEIARAAEQIKPRTLFL 115 Query: 2015 ENVGGLKSANDGGAFKKILNDLGEAGYRLYPHLYKFEEYGIPQARHRIIIIG 1860 ENV GL S + G F+ I++ L E GY + + +G+PQ R R+ IIG Sbjct: 116 ENVRGLLSHDKGRTFRTIISTLDELGYDAEWQILNSKNFGVPQNRERVFIIG 167 >ref|NP_818425.1|gp127 Length = 247 Score = 69.7 bits (169), Expect = 1e-12 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Frame = -3 Query: 2213 PESVICQDVRKLNIDSLQPID------ALAFGFPCNDFSVVGEQKGFNGEYGPLYTYGVK 2052 P++V D++ ++ D L+ + L GFPC D S G G GE L+ V+ Sbjct: 45 PDAVQFDDIKNVSGDDLRSVGFVPERGILTGGFPCQDISAAGRGAGLAGERSGLFWEIVR 104 Query: 2051 VLKKFKPMWFLAENVGGLKSANDGGAFKKILNDLGEAGYRLYPHLYKFEEYGIPQARHRI 1872 +L + P WF+ ENV L S + G ++ L +GY L + + G+PQ R RI Sbjct: 105 LLNELHPKWFILENVPRLLSIHGGRDMGTVVGALAGSGYGLAWRVLDAQFTGVPQRRRRI 164 Query: 1871 IIIG 1860 I+G Sbjct: 165 FIVG 168 >ref|NP_046694.1|modification methylase Length = 443 Score = 65.5 bits (158), Expect = 3e-11 Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 35/212 (16%) Frame = -3 Query: 2375 KFELGELFCGPGGLAYGAKTAEIENKEYRIIHKWANDYDRDTCDTY--IHNICPDNPESV 2202 K + LF G G + ++ Y +I ++ D+ +Y IHN+ E++ Sbjct: 3 KLRVMSLFSGIGAFEAALRNIGVD---YELIG--FSEIDKYAIKSYCAIHNVS----ETL 53 Query: 2201 ICQDVRKLNIDSLQPIDALAFGFPCNDFSVVGEQKGF-----NGEYGPLYTY-----GVK 2052 D+ K D++ D L GFPC FSV G + G N + L TY GVK Sbjct: 54 NVGDISKAKKDNIPYFDLLTSGFPCPTFSVAGGRDGMEYKCSNCSHEHLITYEDYKKGVK 113 Query: 2051 VLK-----------------------KFKPMWFLAENVGGLKSANDGGAFKKILNDLGEA 1941 K + KP + + ENV GL ++ +G + I + Sbjct: 114 CPKCEAVSKAKDERGTLFFETALLAEEKKPKFVILENVKGLINSGNGQVLRIISETMNNI 173 Query: 1940 GYRLYPHLYKFEEYGIPQARHRIIIIGIRKDL 1845 GYR+ L + + +PQ R R+ IIGIR+DL Sbjct: 174 GYRIDLELLNSKFFNVPQNRERVYIIGIREDL 205 >ref|NP_813725.1|gp9.1 Length = 166 Score = 50.1 bits (118), Expect = 1e-06 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Frame = -3 Query: 2213 PESVICQDVRKLNIDSLQ-PIDALAFGFPCNDFSVVGEQKGFNGEYGPLYTYGVKVLKKF 2037 P++ DVR + L+ +D + GFPC D S G++ G GE ++ ++ Sbjct: 44 PDAPNIGDVRHARWEDLRGEVDTITAGFPCQDISNAGKRAGIQGERSGIWFNIADAIRII 103 Query: 2036 KPMWFLAENVGGLKSANDGGAFKKILNDLGEAGYRLYPHLYKFEEYGIPQARHR 1875 +P + ENVG ++ N G A +L+ L E GY + + G P R R Sbjct: 104 RPRYVYLENVGAIR--NRGQA--AVLSSLSEIGYDAVWTSLRASDIGAPHERLR 153 >ref|NP_817858.1|gp7 Length = 196 Score = 48.9 bits (115), Expect = 2e-06 Identities = 37/134 (27%), Positives = 52/134 (38%), Gaps = 24/134 (17%) Frame = -3 Query: 2192 DVRKLNID----SLQPIDALAFGFPCNDFSVVGEQKGF-NGEYGPLYTYGVKVLKKFKPM 2028 DVR++N SL P+D L GFPC D S G Q G G L+ V+ + +P Sbjct: 57 DVRRVNWSRIRWSLGPVDILCGGFPCTDISPAGRQAGLAPGTQSGLWVEFVRAIDTLRPQ 116 Query: 2027 WFLAENVGGL-------------------KSANDGGAFKKILNDLGEAGYRLYPHLYKFE 1905 + ENV L A D +L DL + G+ + Sbjct: 117 TVVIENVRNLLHVRANIRSTLGRMGPDQRDMAGDPRGIGAVLGDLADLGFDAEWEVVPAS 176 Query: 1904 EYGIPQARHRIIII 1863 + G P R RI ++ Sbjct: 177 DAGAPHRRQRIFVV 190 >ref|NP_818053.1|gp80 Length = 252 Score = 47.8 bits (112), Expect = 5e-06 Identities = 28/98 (28%), Positives = 43/98 (43%) Frame = -3 Query: 2156 IDALAFGFPCNDFSVVGEQKGFNGEYGPLYTYGVKVLKKFKPMWFLAENVGGLKSANDGG 1977 +D + GFPC D S G +KG G L+ + ++ +P + L ENV L Sbjct: 66 VDLICGGFPCQDISNAGARKGITGPKSSLWGGMLHTVRNIRPRYVLIENVAALLVR---- 121 Query: 1976 AFKKILNDLGEAGYRLYPHLYKFEEYGIPQARHRIIII 1863 +L DL E+G+ + G P R R+ I+ Sbjct: 122 GVDTVLADLHESGFNAEWSVLSACAMGAPHTRERLFIL 159 >ref|NP_945098.1|gp67 Length = 433 Score = 37.0 bits (84), Expect = 0.010 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = -3 Query: 2156 IDALAFGFPCNDFSVVGEQKGFNGEYGPLYTYGVKVLKKFKPMWFLAENVGGLKSA 1989 +D + GFPC D SV G + G +G+ L+ + + ENV G+ SA Sbjct: 79 VDCVIAGFPCQDLSVAGRRAGLDGKRSGLFFRVADIADDCGAWLLVLENVSGIISA 134 >ref|YP_006537.1|Dmt Length = 754 Score = 33.1 bits (74), Expect = 0.14 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%) Frame = -3 Query: 2186 RKLNIDSLQPIDALAFGFPCNDFSVVGEQKGFNGEYGPLYTYGVKVLKK---------FK 2034 +K+ ++ D L +G PC FS+ G + G + E G L V++ K Sbjct: 59 KKVLAGEIESPDVLVWGTPCQAFSIAGLRGGLDDERGALTLKYVELANAIDDKRSESFLK 118 Query: 2033 PMWFLAENVGGLKSAND 1983 P + ENV G+ S+ D Sbjct: 119 PTVIVWENVPGVLSSAD 135 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,536,296 Number of Sequences: 14420 Number of extensions: 199542 Number of successful extensions: 559 Number of sequences better than 0.5: 11 Number of HSP's better than 0.5 without gapping: 531 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 557 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1161290944 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig127 (2894 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061653.1|transposase 104 5e-23 ref|NP_040341.1|putative transposase 45 4e-05 >ref|NP_061653.1|transposase Length = 328 Score = 104 bits (260), Expect = 5e-23 Identities = 65/184 (35%), Positives = 90/184 (48%), Gaps = 1/184 (0%) Frame = -1 Query: 2669 QRVKKIALKNLKGSSIEERPKEVNDRKEYGHWEMDCVVG-RKNSAAVLLVLSERKTREEI 2493 Q+ K+ K G I +RPKE+ R +GHWE D +V R S + +ERK+R Sbjct: 145 QKPKETRGKFNIGRPISQRPKEIKKRNTFGHWEADTIVSSRGKSKGCIATFAERKSRYYY 204 Query: 2492 ILKLPDKTQESVIKAIDELXXXXXXXXXXXXKTITVDNGTEFLDYRGIEKSKTEPGKDRT 2313 + +PD++ S+ AI+ L TITVD G EF Y+ IE + Sbjct: 205 CVLMPDRSSNSMETAINNLIKHLPKGAVK---TITVDRGKEFSCYQNIEN------QFNI 255 Query: 2312 KVYYAHPYSSWERGTNENINKLIRRFIPKGTDXXXXXXXXXXXIERWINEYPRRMFGYRS 2133 VY+A PYS+W+RGTNEN N L+R F PK TD IN PR+ ++ Sbjct: 256 NVYFADPYSAWQRGTNENTNGLLREFFPKKTDLAKVNQEQLNYALDSINYRPRKCLNWKF 315 Query: 2132 AIEM 2121 E+ Sbjct: 316 PYEV 319 >ref|NP_040341.1|putative transposase Length = 322 Score = 45.1 bits (105), Expect = 4e-05 Identities = 42/160 (26%), Positives = 67/160 (41%) Frame = -1 Query: 2600 NDRKEYGHWEMDCVVGRKNSAAVLLVLSERKTREEIILKLPDKTQESVIKAIDELXXXXX 2421 N G EMD VVG+ + +A+L VL E+ +++ +KL + T V K ++ Sbjct: 167 NKVSNVGWLEMDTVVGKDHKSAIL-VLVEQLSKKYFAIKLENHTAREVEKKFKDIIIKNN 225 Query: 2420 XXXXXXXKTITVDNGTEFLDYRGIEKSKTEPGKDRTKVYYAHPYSSWERGTNENINKLIR 2241 I D EF +R +E T+VY+ S ++ E +N +R Sbjct: 226 LIGKIKG--IITDRRKEFSKWREMEIFA------ETQVYFCDAGSPQQKPLIEYMNSELR 277 Query: 2240 RFIPKGTDXXXXXXXXXXXIERWINEYPRRMFGYRSAIEM 2121 + PKGTD + IN+ R + S+ EM Sbjct: 278 HWFPKGTDFNKVSQKQIDWVVNVINDKLRPCLNWISSKEM 317 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,263,232 Number of Sequences: 14420 Number of extensions: 282132 Number of successful extensions: 753 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 713 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 749 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1405165107 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig128 (3682 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,683,603 Number of Sequences: 14420 Number of extensions: 354640 Number of successful extensions: 1039 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 948 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1039 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1811907528 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig129 (2270 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_195224.1|S-adenosylmethionine decarboxylase 98 4e-21 >ref|YP_195224.1|S-adenosylmethionine decarboxylase Length = 110 Score = 97.8 bits (242), Expect = 4e-21 Identities = 42/109 (38%), Positives = 67/109 (61%) Frame = +2 Query: 398 LGRHILAEIYGCDAAILNNRNLIEKIMVESALEAGAEVREVAFHKFSPQGVSGVVVISES 577 +G H L ++ CD+ L++ +LI KI++ +A A + ++ HKF PQGV+ +++++ES Sbjct: 1 MGDHFLLNLFECDSDRLDDEDLIRKILINAATSADMTIIDMMSHKFHPQGVTAIIMLAES 60 Query: 578 HLAIHTWPELGYAAVDVFTCGEKVNPWDACNYLTERFKAKHMTATEVKR 724 H++IHTWPE AAVDV+TCG K P AC ++ H + R Sbjct: 61 HISIHTWPEEYKAAVDVYTCGTKAKPRVACEIISHELNCIHFNIKHIVR 109 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,701,616 Number of Sequences: 14420 Number of extensions: 246091 Number of successful extensions: 708 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 681 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 708 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1090359821 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig130 (2592 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_195118.1|hypothetical protein 32 0.33 ref|NP_690825.1|major core structural protein P1 32 0.33 >ref|YP_195118.1|hypothetical protein Length = 2747 Score = 32.0 bits (71), Expect = 0.33 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = -3 Query: 1360 SQKKLVDRLVKEIPEIKSVVLNVNT--KRTNVILGDENIVVYGRDTITDY 1217 S K +RL+ +I I+S N++T K TN++ D N + Y ++TD+ Sbjct: 2273 SANKKYERLLAQISYIQSPFTNIDTSVKTTNIVPVDSNTINYTSYSVTDF 2322 >ref|NP_690825.1|major core structural protein P1 Length = 723 Score = 32.0 bits (71), Expect = 0.33 Identities = 29/116 (25%), Positives = 48/116 (41%) Frame = -3 Query: 1540 IQHSVSDRVRAVVKEYIEKNNISTYDEITGEGLVRHIMTRVGFKTGEVMVVLVINGRNIP 1361 +QH D V+A+ + + + E+ L I+ + V L + P Sbjct: 219 VQHIFDDIVKAIHVKLLAAASADMVGEVDSRWLHHPIVDEMSRNYTFVSAALDMPIGGDP 278 Query: 1360 SQKKLVDRLVKEIPEIKSVVLNVNTKRTNVILGDENIVVYGRDTITDYIGEFKFNI 1193 K + L KE P ++ ++R NV+ DE + YG+ TI + GE F I Sbjct: 279 GLKNDIHTLEKEAPI--AIASLKGSRRYNVVGRDEYLRTYGKKTIVNVEGEPVFFI 332 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,583,240 Number of Sequences: 14420 Number of extensions: 282340 Number of successful extensions: 672 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 672 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1254153147 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig132 (3132 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,034,976 Number of Sequences: 14420 Number of extensions: 367464 Number of successful extensions: 987 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 895 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 986 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1533202066 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig133 (3234 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 53 2e-07 >ref|NP_046572.1|ABC transporter Length = 705 Score = 53.1 bits (126), Expect = 2e-07 Identities = 40/172 (23%), Positives = 90/172 (52%), Gaps = 4/172 (2%) Frame = +2 Query: 2495 VLKGISLQMEKGRFYGILGPNGSGKTTLLKSMARALRPQKGAIYVNGEDISRMKARELSK 2674 +++ I+L +++ I+G +G+GK+T KS+++ + +IY+NG DI+R + K Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 2675 KIACLYQSTGIACDYPVMDVVLMGRYPYIKRFQTESAKDWEIAKKAMIASNVWHLKDRRI 2854 +I + ++ + + + MG Q E +++ N+ ++ Sbjct: 558 RIVYIDENP-FLFKGTIKENLCMGEI----FDQNEIENACIMSQCHEFICNLDKQYSYKL 612 Query: 2855 NE----ISGGERQRVFIARALVQETDIVLLDEPISHLDIQHQIEILELVGKM 2998 +E +S G++QR+ +ARA++ + +++LDE +S++D + I E + +M Sbjct: 613 SENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM 664 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,730,891 Number of Sequences: 14420 Number of extensions: 355291 Number of successful extensions: 1013 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 927 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1008 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1588306580 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig134 (3320 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061653.1|transposase 104 7e-23 ref|NP_040341.1|putative transposase 45 5e-05 >ref|NP_061653.1|transposase Length = 328 Score = 104 bits (259), Expect = 7e-23 Identities = 62/172 (36%), Positives = 85/172 (49%), Gaps = 1/172 (0%) Frame = -1 Query: 3311 GSSIEERPKEVNDRKEYGHWEMDCVVG-RKNSAAVLLVLSERKTREEIILKLPDKTQESV 3135 G I +RPKE+ R +GHWE D +V R S + +ERK+R + +PD++ S+ Sbjct: 157 GRPISQRPKEIKKRNTFGHWEADTIVSSRGKSKGCIATFAERKSRYYYCVLMPDRSSNSM 216 Query: 3134 IKAIDELXXXXXXXXXXXXKTITVDNGTEFLDYRGIEKSKTEPGKDRTKVYYAHPYSSWE 2955 AI+ L TITVD G EF Y+ IE + VY+A PYS+W+ Sbjct: 217 ETAINNLIKHLPKGAVK---TITVDRGKEFSCYQNIEN------QFNINVYFADPYSAWQ 267 Query: 2954 RGTNENINKLIRRFIPKGTDXXXXXXXXXXXIERWINEYPRRMFGYRSAIEM 2799 RGTNEN N L+R F PK TD IN PR+ ++ E+ Sbjct: 268 RGTNENTNGLLREFFPKKTDLAKVNQEQLNYALDSINYRPRKCLNWKFPYEV 319 >ref|NP_040341.1|putative transposase Length = 322 Score = 45.1 bits (105), Expect = 5e-05 Identities = 42/160 (26%), Positives = 67/160 (41%) Frame = -1 Query: 3278 NDRKEYGHWEMDCVVGRKNSAAVLLVLSERKTREEIILKLPDKTQESVIKAIDELXXXXX 3099 N G EMD VVG+ + +A+L VL E+ +++ +KL + T V K ++ Sbjct: 167 NKVSNVGWLEMDTVVGKDHKSAIL-VLVEQLSKKYFAIKLENHTAREVEKKFKDIIIKNN 225 Query: 3098 XXXXXXXKTITVDNGTEFLDYRGIEKSKTEPGKDRTKVYYAHPYSSWERGTNENINKLIR 2919 I D EF +R +E T+VY+ S ++ E +N +R Sbjct: 226 LIGKIKG--IITDRRKEFSKWREMEIFA------ETQVYFCDAGSPQQKPLIEYMNSELR 277 Query: 2918 RFIPKGTDXXXXXXXXXXXIERWINEYPRRMFGYRSAIEM 2799 + PKGTD + IN+ R + S+ EM Sbjct: 278 HWFPKGTDFNKVSQKQIDWVVNVINDKLRPCLNWISSKEM 317 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,883,954 Number of Sequences: 14420 Number of extensions: 308368 Number of successful extensions: 806 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 760 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 801 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1619151408 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig135 (2419 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061653.1|transposase 77 1e-14 ref|NP_945251.1|DnaC protein 44 1e-04 ref|NP_038305.1|ORF5 42 2e-04 ref|NP_510917.1|similar to Escherichia coli DnaC 40 9e-04 ref|NP_061611.1|orf 21 40 0.001 ref|YP_025058.1|DnaC 40 0.001 ref|NP_075485.1|hypothetical protein 39 0.002 ref|NP_803371.1|dnaC 39 0.002 ref|NP_958645.1|77ORF013 39 0.002 ref|NP_862860.1|gp21 37 0.010 ref|NP_543070.1|putative replication protein DnaC 37 0.010 ref|NP_040341.1|putative transposase 34 0.063 ref|NP_695040.1|putative replication protein DnaC 34 0.063 ref|NP_795384.1|Similar to E. coli DnaC protein 33 0.18 >ref|NP_061653.1|transposase Length = 328 Score = 76.6 bits (187), Expect = 1e-14 Identities = 37/95 (38%), Positives = 52/95 (54%) Frame = +1 Query: 4 RTITADNGSEFSRLSEMLQGLGIEAYFTHPYSSWERGTNERHNGLIRRFIPKGKAIKDFS 183 +TIT D G EFS + I YF PYS+W+RGTNE NGL+R F PK + + Sbjct: 233 KTITVDRGKEFSCYQNIENQFNINVYFADPYSAWQRGTNENTNGLLREFFPKKTDLAKVN 292 Query: 184 EETIKRIQQWLNSLPRRILGYKTPEECFNEEIHNL 288 +E + +N PR+ L +K P E +E+ +L Sbjct: 293 QEQLNYALDSINYRPRKCLNWKFPYEVLCDELLHL 327 >ref|NP_945251.1|DnaC protein Length = 270 Score = 43.5 bits (101), Expect = 1e-04 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 9/125 (7%) Frame = -3 Query: 2075 FIENKHNIVMYGNVGTGKTHLSIALG------VEACKKGLEVRFFRTSALVNRLA---EQ 1923 F + + N V+ G G GKTHL+IA+ +A V F A+ ++ + Sbjct: 118 FNDGRGNAVIVGQAGRGKTHLAIAIAKKLNIDFKANNNPKSVLFMNVPAMFQKIQSGFNK 177 Query: 1922 KKAGTLSGFLKDLNKADLLICDEWGYVPLDRIGAQLLFEVISECYERKSVIINTNIEFSR 1743 K A T +L L K D LI D++G + L+ ++ R I+ TN+ Sbjct: 178 KDARTTDEWLDLLKKVDYLILDDFGKGDQSQWKQDFLYNLLD---SRDKTIVTTNLIGKD 234 Query: 1742 WVNVF 1728 V +F Sbjct: 235 MVQIF 239 >ref|NP_038305.1|ORF5 Length = 260 Score = 42.4 bits (98), Expect = 2e-04 Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 11/147 (7%) Frame = -3 Query: 2162 LYHKDIESFRFDEVKLPSGVTPEYLKECE-----FIENK-HNIVMYGNVGTGKTHLSI-- 2007 L D+++ FD K + E LK +++ + +NIV+ GN G GK+HL+ Sbjct: 80 LMDDDLKNANFDNYKAVTRNQKEDLKNVRSQLRGYLDGQDYNIVLIGNTGVGKSHLAYSA 139 Query: 2006 --ALGVEACKKGLEVRFFRTSALVNRLAEQKKAGTLSG-FLKDLNKADLLICDEWGYVPL 1836 AL K G+ + +V+ LA+ K+ L +++ +++A+ L+ D+ G + Sbjct: 140 LKALSDHTKKMGVFIN------VVDLLAKIKEDFNLEAEYIRRISEAEWLVLDDLGTEKV 193 Query: 1835 DRIGAQLLFEVISECYERKSVIINTNI 1755 + +L+ +++ +R II TN+ Sbjct: 194 TEWSSGILYSILN---KRTKTIITTNL 217 >ref|NP_510917.1|similar to Escherichia coli DnaC Length = 259 Score = 40.4 bits (93), Expect = 9e-04 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Frame = -3 Query: 2096 EYLKECEFIENKHNIVMYGNVGTGKTHLSIALGVEACKKGLEVRFFRTSALVNRLA---E 1926 EY++ E K +++ G+ GTGK+HL+ A+ KG V F L++R+ Sbjct: 108 EYVQGFSTKEPK-SLIFQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYN 166 Query: 1925 QKKAGTLSGFLKDLNKADLLICDEWG 1848 + T +K L++ DLL+ D+ G Sbjct: 167 KNAVETTDELVKLLSEIDLLVLDDMG 192 >ref|NP_061611.1|orf 21 Length = 257 Score = 40.0 bits (92), Expect = 0.001 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Frame = -3 Query: 2096 EYLKECEFIENKHNIVMYGNVGTGKTHLSIALGVEACKKGLEVRFFRTSALVNRL--AEQ 1923 EY++ E K ++++ G+ GTGK+HL+ A+ KG V F L++R+ A Sbjct: 106 EYVQGFSTKEPK-SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIQMLMDRIKAAYN 164 Query: 1922 KKA-GTLSGFLKDLNKADLLICDEWG 1848 K A T ++ L+ DLL+ D+ G Sbjct: 165 KNAVETTDELVRLLSDIDLLVLDDMG 190 >ref|YP_025058.1|DnaC Length = 260 Score = 39.7 bits (91), Expect = 0.001 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 18/140 (12%) Frame = -3 Query: 2057 NIVMYGNVGTGKTHLSIALGVEACKKGLEVRFFRTSALVNRLAEQKKAG----TLSGFLK 1890 N++++G G GKT L++A+ +G F T+ L N + Q A L G + Sbjct: 103 NVILFGPRGAGKTSLALAMLTSLRDEGQSGLFISTAELSNLMGLQYDAPDVRLRLVGIER 162 Query: 1889 DLNKADLLICDEWG--------YVPLDRIGAQLLFEVISECYE------RKSVIINTNIE 1752 + +A +L+ D++G P+ R +L++ V + + R S II TN E Sbjct: 163 AMKEAGVLLLDDFGTEGGMKLDIKPVRRDMQELIYRVANARLDFESNRPRLSTIITTNNE 222 Query: 1751 FSRWVNVFYDEQMTGAIIDR 1692 S + Y+ ++ II + Sbjct: 223 MSE-LEHMYNSKLISRIIPK 241 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 39.3 bits (90), Expect = 0.002 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Frame = -3 Query: 2096 EYLKECEFIENKHNIVMYGNVGTGKTHLSIALGVEACKKGLEVRFFRTSALVNRLA---E 1926 EY++ E K ++++ G+ GTGK+HL+ A+ KG V F L++R+ Sbjct: 108 EYVQGFSTKEPK-SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYN 166 Query: 1925 QKKAGTLSGFLKDLNKADLLICDEWG 1848 + T ++ L+ DLL+ D+ G Sbjct: 167 KNAVETTDELVRLLSDIDLLVLDDMG 192 >ref|NP_803371.1|dnaC Length = 259 Score = 39.3 bits (90), Expect = 0.002 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Frame = -3 Query: 2096 EYLKECEFIENKHNIVMYGNVGTGKTHLSIALGVEACKKGLEVRFFRTSALVNRLA---E 1926 EY++ E K ++++ G+ GTGK+HL+ A+ KG V F L++R+ Sbjct: 108 EYVQGFSTKEPK-SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYN 166 Query: 1925 QKKAGTLSGFLKDLNKADLLICDEWG 1848 + T ++ L+ DLL+ D+ G Sbjct: 167 KNAVETTDELVRLLSDIDLLVLDDMG 192 >ref|NP_958645.1|77ORF013 Length = 259 Score = 39.3 bits (90), Expect = 0.002 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Frame = -3 Query: 2096 EYLKECEFIENKHNIVMYGNVGTGKTHLSIALGVEACKKGLEVRFFRTSALVNRLA---E 1926 EY++ E K ++++ G+ GTGK+HL+ A+ KG V F L++R+ Sbjct: 108 EYVQGFSTKEPK-SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYN 166 Query: 1925 QKKAGTLSGFLKDLNKADLLICDEWG 1848 + T ++ L+ DLL+ D+ G Sbjct: 167 KNAVETTDELVRLLSDIDLLVLDDMG 192 >ref|NP_862860.1|gp21 Length = 256 Score = 37.0 bits (84), Expect = 0.010 Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 5/148 (3%) Frame = -3 Query: 2063 KHNIVMYGNVGTGKTHLSIALGVEACKKGLEVRFFRTSALVNRLAEQKKAGTLSGFL-KD 1887 ++NIV G GTGK+HL+ A+ + E+ F + + L + K + FL Sbjct: 118 RNNIVFQGEAGTGKSHLAFAMMKYLSETTKEIAIFIN--VTDLLMKIKADFSQEEFLVNK 175 Query: 1886 LNKADLLICDEWGYVPLDRIGAQLLFEVISECYERKSVIINTNIEF----SRWVNVFYDE 1719 + A L+ D+ G +L+ +++ +R + +I TN+ R+ F Sbjct: 176 IASAKFLVLDDLGMEKDSEWSFSILYNILN---KRANTVITTNLTAQEIQKRYGRPFMSR 232 Query: 1718 QMTGAIIDRLLHHCHLLLFPGQSNRMRE 1635 M G + + HL++F N+ ++ Sbjct: 233 LMKG------VDNSHLMVFNDLKNKRKD 254 >ref|NP_543070.1|putative replication protein DnaC Length = 252 Score = 37.0 bits (84), Expect = 0.010 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 4/102 (3%) Frame = -3 Query: 2078 EFIENKHNIVMYGNVGTGKTHLSIALGVEACKKGLE----VRFFRTSALVNRLAEQKKAG 1911 + +EN ++VM G+ GTGK HL++++ + L R + V Sbjct: 99 DMLENGTSLVMTGSCGTGKNHLAVSMAKHIIRNYLASVEITDVMRLTRAVKNCWRNDSEK 158 Query: 1910 TLSGFLKDLNKADLLICDEWGYVPLDRIGAQLLFEVISECYE 1785 T ++ DLLI DE G +L E+I+ YE Sbjct: 159 TADEVIEHYASMDLLIIDEVGVQFGSAAEMAILQEIINARYE 200 >ref|NP_040341.1|putative transposase Length = 322 Score = 34.3 bits (77), Expect = 0.063 Identities = 24/90 (26%), Positives = 38/90 (42%) Frame = +1 Query: 10 ITADNGSEFSRLSEMLQGLGIEAYFTHPYSSWERGTNERHNGLIRRFIPKGKAIKDFSEE 189 I D EFS+ EM + YF S ++ E N +R + PKG S++ Sbjct: 233 IITDRRKEFSKWREMEIFAETQVYFCDAGSPQQKPLIEYMNSELRHWFPKGTDFNKVSQK 292 Query: 190 TIKRIQQWLNSLPRRILGYKTPEECFNEEI 279 I + +N R L + + +E F + I Sbjct: 293 QIDWVVNVINDKLRPCLNWISSKEMFLQNI 322 >ref|NP_695040.1|putative replication protein DnaC Length = 296 Score = 34.3 bits (77), Expect = 0.063 Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 5/118 (4%) Frame = -3 Query: 2090 LKECEFIENKHNIVMYGNVGTGKTHLSIALGVEACK-KGLEVRFFRTSALVNRLAE---- 1926 + E + + N V+ G GTGK+HL++++ + + L V F S +++ + + Sbjct: 142 VSEYYYTGGEGNTVVSGPAGTGKSHLAMSILKDCLQHTDLTVIFASWSEVLHLIKDSFDN 201 Query: 1925 QKKAGTLSGFLKDLNKADLLICDEWGYVPLDRIGAQLLFEVISECYERKSVIINTNIE 1752 + + F++ DLL+ D+ G + LL EV+ R II TN++ Sbjct: 202 KDSFYSTEYFMEVFRNTDLLVIDDIGSEKITEWSMSLLTEVLD---ARTKTIITTNLK 256 >ref|NP_795384.1|Similar to E. coli DnaC protein Length = 167 Score = 32.7 bits (73), Expect = 0.18 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 18/142 (12%) Frame = -3 Query: 2057 NIVMYGNVGTGKTHLSIALG------VEACKKGLEVRFFRTSALVNRLAEQKKAGTLSGF 1896 N ++ G G GK+HL+ +A V F +L N++ E +GF Sbjct: 12 NAIVTGPSGVGKSHLTYGFAKWLNEQFKAYDNPKSVLFVSVVSLFNKIEESFTVD--NGF 69 Query: 1895 LKD-----LNKADLLICDEWGYVPL-------DRIGAQLLFEVISECYERKSVIINTNIE 1752 K L + D L D+ G + Q+L+E++ R + IINTN+ Sbjct: 70 SKAKMVDLLTRVDYLFLDDLGKESRKDGNKAKNEWRHQVLYEILDN---RSNTIINTNLT 126 Query: 1751 FSRWVNVFYDEQMTGAIIDRLL 1686 ++ D+ GA+ R+L Sbjct: 127 SKDIKQLYADDFGNGALSSRIL 148 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,484,675 Number of Sequences: 14420 Number of extensions: 227795 Number of successful extensions: 690 Number of sequences better than 0.5: 14 Number of HSP's better than 0.5 without gapping: 659 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 690 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1171188310 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig138 (3674 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818445.1|gp145 77 1e-14 ref|NP_695090.1|hypothetical protein 59 5e-09 ref|NP_050001.1|putative replication protein 59 5e-09 ref|NP_049954.1|putative replication protein 59 5e-09 ref|NP_056711.1|gp271 58 6e-09 ref|NP_049423.1|Hypothetical protein 57 1e-08 ref|NP_795618.1|hypothetical protein 57 2e-08 ref|NP_795448.1|hypothetical protein 57 2e-08 ref|YP_024985.1|putative integrase 37 0.020 ref|YP_024428.1|integrase 37 0.020 ref|NP_803700.1|ORF134 33 0.17 ref|NP_046553.1|site-specific recombinase 33 0.22 ref|NP_038309.1|ORF8 33 0.28 ref|YP_195047.1|hypothetical protein 32 0.48 >ref|NP_818445.1|gp145 Length = 219 Score = 77.0 bits (188), Expect = 1e-14 Identities = 46/125 (36%), Positives = 59/125 (47%) Frame = -1 Query: 3542 EKRPLYTGWYNDSTTDIEQIKKWWRKTTNANIGIPTGEKSGWXXXXXXXXXDETLSALES 3363 EKRP + D+T D QI+KWW + N NIG+PTG +G+ S E Sbjct: 88 EKRPATKNGFKDATRDEAQIRKWWTENPNYNIGLPTGRAAGFDVVDIDGPEG-MKSLAEL 146 Query: 3362 THGKLPDTVTAVTGRGGRHYVFKYPRGRSIPNKTKFAPGLDNHSTGGLIVVAPSIHVSDN 3183 G LPD V G H Y G N+ PG+D STGG +V PS+ V+ Sbjct: 147 GEGVLPDVHGKVATPRGFHL---YVAGTDDGNRAGVRPGIDYRSTGGFVVAVPSV-VNGK 202 Query: 3182 QYQWL 3168 QY W+ Sbjct: 203 QYSWV 207 >ref|NP_695090.1|hypothetical protein Length = 269 Score = 58.5 bits (140), Expect = 5e-09 Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 21/218 (9%) Frame = -1 Query: 3485 IKKWWRKTTNANIGIPTGEKSGWXXXXXXXXXDETLSALES-THGKL-PDTVTAVTGRGG 3312 I++ WR +ANI + T + + + L+ L + H +L P T+ A+T GG Sbjct: 40 IRRVWRDNPDANIALKTD--TFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGG 97 Query: 3311 RHYVFKYPRGRSIPNKTKFAPGLDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTPAE 3132 RH K I G+D + ++ P + S Y+W HS D + E Sbjct: 98 RHIYLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITE 157 Query: 3131 APEWLLKLMGREETLLTPFEGSSIVAGI------------------KEGSRNSTLTSLAG 3006 AP L+K++ + + +E SS + +G RN+ L G Sbjct: 158 APLALIKVLQKMKPEPLSYEVSSFASDCVRSTKTTKLFESILLGFGDKGGRNNALAEFVG 217 Query: 3005 TMRVRGMTEESIY-AALLAENNARCNPPLDEAEVKKIY 2895 + +RG+ E Y A +A NN + PL + E ++ + Sbjct: 218 GLLLRGVDPEITYHLAKMANNNTQ--EPLGDKEFERTF 253 >ref|NP_050001.1|putative replication protein Length = 271 Score = 58.5 bits (140), Expect = 5e-09 Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 21/218 (9%) Frame = -1 Query: 3485 IKKWWRKTTNANIGIPTGEKSGWXXXXXXXXXDETLSALES-THGKL-PDTVTAVTGRGG 3312 I++ WR +ANI + T + + + L+ L + H +L P T+ A+T GG Sbjct: 42 IRRVWRDNPDANIALKTD--TFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGG 99 Query: 3311 RHYVFKYPRGRSIPNKTKFAPGLDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTPAE 3132 RH K I G+D + ++ P + S Y+W HS D + E Sbjct: 100 RHIYLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITE 159 Query: 3131 APEWLLKLMGREETLLTPFEGSSIVAGI------------------KEGSRNSTLTSLAG 3006 AP L+K++ + + +E SS + +G RN+ L G Sbjct: 160 APLALIKVLQKMKPEPLSYEVSSFASDCVRSTKTTKLFESILLGFGDKGGRNNALAEFVG 219 Query: 3005 TMRVRGMTEESIY-AALLAENNARCNPPLDEAEVKKIY 2895 + +RG+ E Y A +A NN + PL + E ++ + Sbjct: 220 GLLLRGVDPEITYHLAKMANNNTQ--EPLGDKEFERTF 255 >ref|NP_049954.1|putative replication protein Length = 271 Score = 58.5 bits (140), Expect = 5e-09 Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 21/218 (9%) Frame = -1 Query: 3485 IKKWWRKTTNANIGIPTGEKSGWXXXXXXXXXDETLSALES-THGKL-PDTVTAVTGRGG 3312 I++ WR +ANI + T + + + L+ L + H +L P T+ A+T GG Sbjct: 42 IRRVWRDNPDANIALRTD--TFFVIDVDMHGDVDGLTNLRNWEHARLIPQTLQAITPSGG 99 Query: 3311 RHYVFKYPRGRSIPNKTKFAPGLDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTPAE 3132 RH K I G+D + ++ P + S Y+W HS D + E Sbjct: 100 RHIYLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITE 159 Query: 3131 APEWLLKLMGREETLLTPFEGSSIVAGI------------------KEGSRNSTLTSLAG 3006 AP L+K++ + + +E SS + +G RN+ L G Sbjct: 160 APLALIKVLQKMKPEPLSYEVSSFASDCVRSTKTTKLFESILLGFGDKGGRNNALAEFVG 219 Query: 3005 TMRVRGMTEESIY-AALLAENNARCNPPLDEAEVKKIY 2895 + +RG+ E Y A +A NN + PL + E ++ + Sbjct: 220 GLLLRGVDPEITYHLAKMANNNTQ--EPLGDKEFERTF 255 >ref|NP_056711.1|gp271 Length = 271 Score = 58.2 bits (139), Expect = 6e-09 Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 21/218 (9%) Frame = -1 Query: 3485 IKKWWRKTTNANIGIPTGEKSGWXXXXXXXXXDETLSALES-THGKL-PDTVTAVTGRGG 3312 I++ WR +ANI + T + + + L+ L + H +L P T+ A+T GG Sbjct: 42 IRRVWRDNPDANIALRTD--TFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGG 99 Query: 3311 RHYVFKYPRGRSIPNKTKFAPGLDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTPAE 3132 RH K I G+D + ++ P + S Y+W HS D + E Sbjct: 100 RHIYLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITE 159 Query: 3131 APEWLLKLMGREETLLTPFEGSSIVAGI------------------KEGSRNSTLTSLAG 3006 AP L+K++ + + +E SS + +G RN+ L G Sbjct: 160 APLALIKVLQKMKPEPLSYEVSSFASDCVRSTKTTKLFESILLGFGDKGGRNNALAEFVG 219 Query: 3005 TMRVRGMTEESIY-AALLAENNARCNPPLDEAEVKKIY 2895 + +RG+ E Y A +A NN + PL + E ++ + Sbjct: 220 GLLLRGVDPEITYHLAKMANNNTQ--EPLGDKEFERTF 255 >ref|NP_049423.1|Hypothetical protein Length = 271 Score = 57.4 bits (137), Expect = 1e-08 Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 21/218 (9%) Frame = -1 Query: 3485 IKKWWRKTTNANIGIPTGEKSGWXXXXXXXXXDETLSALES-THGKL-PDTVTAVTGRGG 3312 I++ WR +ANI + T + + + L+ L + H +L P T+ A+T GG Sbjct: 42 IRRVWRDNPDANIALKTD--TFFVIDVDMHGDVDGLTNLRNWEHARLIPKTLQAITPSGG 99 Query: 3311 RHYVFKYPRGRSIPNKTKFAPGLDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTPAE 3132 RH K I G+D + ++ P + S Y+W HS D + E Sbjct: 100 RHIYLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITE 159 Query: 3131 APEWLLKLMGREETLLTPFEGS-----------------SIVAGI-KEGSRNSTLTSLAG 3006 AP L+K++ + + +E S SI+ G +G RN+ L G Sbjct: 160 APLALIKVLQKMKPEPLNYEVSSFASDSVRSTKTTKLFESILLGFGDKGGRNNALAEFVG 219 Query: 3005 TMRVRGMTEESIY-AALLAENNARCNPPLDEAEVKKIY 2895 + +RG+ E Y A +A NN + PL E ++ + Sbjct: 220 GLLLRGVDPEITYHLAKMANNNTQ--EPLGNKEFERTF 255 >ref|NP_795618.1|hypothetical protein Length = 267 Score = 56.6 bits (135), Expect = 2e-08 Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 21/229 (9%) Frame = -1 Query: 3539 KRPLYTGWYNDSTTDIEQIKKWWRKTTNANIGIPTGEKSGWXXXXXXXXXDETLSAL-ES 3363 K+PL + T+ E ++ W+ +ANI + T + + + L L E Sbjct: 23 KKPLVAFADKPAFTEHE-LRLIWKDNPDANIALKTD--TFFVIDIDVHNDVDGLKNLREW 79 Query: 3362 THGKL-PDTVTAVTGRGGRHYVFKYPRGRSIPNKTKFAPGLDNHSTGGLIVVAPSIHVSD 3186 H +L P T+ A T GGRH K P+G S+ F G+D + V+ P + + Sbjct: 80 EHARLIPKTLQATTPSGGRHIYLKKPKGVSMAQNIGFIDGVDLKAHVNNYVLVPPSNNAK 139 Query: 3185 NQYQWLKGHSSFDKTPAEAPEWLLKLMGREETLLTPFEGSSIVAGIKEGS---------- 3036 Y+W HS EAP L+ ++ RE ++ SS +G +GS Sbjct: 140 GMYEWDMVHSPTSGEMTEAPLELINVL-RELKPAYEYDASSFTSGDYQGSNKTAKLFETI 198 Query: 3035 ---------RNSTLTSLAGTMRVRGMTEESIYAALLAENNARCNPPLDE 2916 RN+ L G + +R + E Y N+ +P D+ Sbjct: 199 VLGFGDTGGRNNALAEFVGGLLLRNVDVEIAYTLAKMANHKTADPLSDK 247 >ref|NP_795448.1|hypothetical protein Length = 267 Score = 56.6 bits (135), Expect = 2e-08 Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 21/229 (9%) Frame = -1 Query: 3539 KRPLYTGWYNDSTTDIEQIKKWWRKTTNANIGIPTGEKSGWXXXXXXXXXDETLSAL-ES 3363 K+PL + T+ E ++ W+ +ANI + T + + + L L E Sbjct: 23 KKPLVAFADKPAFTEHE-LRLIWKDNPDANIALKTD--TFFVIDIDVHNDVDGLKNLREW 79 Query: 3362 THGKL-PDTVTAVTGRGGRHYVFKYPRGRSIPNKTKFAPGLDNHSTGGLIVVAPSIHVSD 3186 H +L P T+ A T GGRH K P+G S+ F G+D + V+ P + + Sbjct: 80 EHARLIPKTLQATTPSGGRHIYLKKPKGVSMAQNIGFIDGVDLKAHVNNYVLVPPSNNAK 139 Query: 3185 NQYQWLKGHSSFDKTPAEAPEWLLKLMGREETLLTPFEGSSIVAGIKEGS---------- 3036 Y+W HS EAP L+ ++ RE ++ SS +G +GS Sbjct: 140 GMYEWDMVHSPTSGEMTEAPLELINVL-RELKPAYEYDASSFTSGDYQGSNKTAKLFETI 198 Query: 3035 ---------RNSTLTSLAGTMRVRGMTEESIYAALLAENNARCNPPLDE 2916 RN+ L G + +R + E Y N+ +P D+ Sbjct: 199 VLGFGDTGGRNNALAEFVGGLLLRNVDVEIAYTLAKMANHKTADPLSDK 247 >ref|YP_024985.1|putative integrase Length = 762 Score = 36.6 bits (83), Expect = 0.020 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 13/156 (8%) Frame = -1 Query: 3530 LYTGWYNDSTTDIEQIKKWWR---KTTNANIGIPTGEKSGWXXXXXXXXXD------ETL 3378 +Y Y ++ + I W+ + N+GI G++ G + L Sbjct: 49 MYNIGYQHASKNKNTIDSWFGVGGRFRGFNLGIACGKRGGVFAVDIDVEDSKGNRGFDNL 108 Query: 3377 SALESTHGKLPDTVTAVTGRGGRHYVFKYPR-GRSIPNKTKFA---PGLDNHSTGGLIVV 3210 + LE +GKL + T GGRHY+F++ + +S K A G D S IV Sbjct: 109 AILEEKYGKLVAPIQE-TPTGGRHYLFQWDKYAKSSSGKIAKAIDTRGGDEDSCKSHIVA 167 Query: 3209 APSIHVSDNQYQWLKGHSSFDKTPAEAPEWLLKLMG 3102 PS+ + +Y W + P E P+W+ +G Sbjct: 168 WPSVR-DEGEYTW--SMPTLGDVP-EIPKWISDALG 199 >ref|YP_024428.1|integrase Length = 762 Score = 36.6 bits (83), Expect = 0.020 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 13/156 (8%) Frame = -1 Query: 3530 LYTGWYNDSTTDIEQIKKWWR---KTTNANIGIPTGEKSGWXXXXXXXXXD------ETL 3378 +Y Y ++ + I W+ + N+GI G++ G + L Sbjct: 49 MYNIGYQHASKNKNTIDSWFGVGGRFRGFNLGIACGKRGGVFAVDIDVEDSKGNRGFDNL 108 Query: 3377 SALESTHGKLPDTVTAVTGRGGRHYVFKYPR-GRSIPNKTKFA---PGLDNHSTGGLIVV 3210 + LE +GKL + T GGRHY+F++ + +S K A G D S IV Sbjct: 109 AILEEKYGKLVAPIQE-TPTGGRHYLFQWDKYAKSSSGKIAKAIDTRGGDEDSCKSHIVA 167 Query: 3209 APSIHVSDNQYQWLKGHSSFDKTPAEAPEWLLKLMG 3102 PS+ + +Y W + P E P+W+ +G Sbjct: 168 WPSVR-DEGEYTW--SMPTLGDVP-EIPKWISDALG 199 >ref|NP_803700.1|ORF134 Length = 457 Score = 33.5 bits (75), Expect = 0.17 Identities = 20/56 (35%), Positives = 24/56 (42%) Frame = +2 Query: 689 NPELLHLPFSHTNPKYNNSPNKEYFSKVSPSYFVTFICVFQNSYHFFVQ*TFVADG 856 NP LL LPF T Y+N EY S F I V Y F+ + + DG Sbjct: 2 NPLLLPLPFDETGESYSNRTKGEYHSLAKQKGFPYRIIVMDKGY-FYTKGMVIRDG 56 >ref|NP_046553.1|site-specific recombinase Length = 545 Score = 33.1 bits (74), Expect = 0.22 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 3/112 (2%) Frame = -3 Query: 2412 NEVKKSVVDYKSELSALRKKTL--NINRSVCNLDEVISSIQASSQTQDRKIDSLEKFCSE 2239 N+V+ +++DY S L+ L TL +IN + ++ S+++ Q + + EK Sbjct: 364 NDVENAILDYLSSLNDLNDSTLTKHINSMLSKYEDDNSNMKTKKQMSEH-LSQKEKELKN 422 Query: 2238 SEKFISEVIRIDEEVAELINKRKENFYKEYYYLK-PESEKSGWEKIKDGLKS 2086 E FI + EL KRK +E+ L+ ++E +G + + + S Sbjct: 423 KENFIFDKYESGIYSDELFLKRKAALDEEFKELQNAKNELNGLQDTQSEIDS 474 >ref|NP_038309.1|ORF8 Length = 319 Score = 32.7 bits (73), Expect = 0.28 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 8/102 (7%) Frame = -3 Query: 2430 QMPGL-INEVKKSVVDYKSELSALRKKTLNINRSVCN-LDEVISSIQASSQTQDRKIDSL 2257 Q+ GL NE+KK + YKS L +K +I++ N L E ++++ S +++L Sbjct: 43 QLDGLEYNEIKKEITRYKSLYDNLERKRKDISKVYKNPLVEFEANLKKSYTPLKGLLNTL 102 Query: 2256 EKFCSESEKFISEVIRID------EEVAELINKRKENFYKEY 2149 + E E+ +++R+D EE EL K+ F ++Y Sbjct: 103 REKRDEIEEH-QKMLRVDHVRYVFEEKCELAGLDKDTFKEKY 143 >ref|YP_195047.1|hypothetical protein Length = 128 Score = 32.0 bits (71), Expect = 0.48 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 5/52 (9%) Frame = -3 Query: 633 LIQCILVSEVSDNDALILKEFIESIQTEKDII-----KYYPINEDTMKKLQD 493 L QCIL S D + K F++S+ D I K YP++ED M +LQD Sbjct: 68 LEQCILYFWDSLEDEIYPKHFLDSLLQMVDDIETGKEKVYPMDEDFMVRLQD 119 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,560,637 Number of Sequences: 14420 Number of extensions: 349603 Number of successful extensions: 1099 Number of sequences better than 0.5: 14 Number of HSP's better than 0.5 without gapping: 1004 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1091 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1808694926 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig139 (2776 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,774,906 Number of Sequences: 14420 Number of extensions: 277322 Number of successful extensions: 762 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 715 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 762 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1353896748 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig140 (2878 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_075297.1|gp30 42 4e-04 ref|NP_690682.1|hypothetical protein 39 0.003 ref|NP_818340.1|gp39 38 0.007 ref|NP_817358.1|gp20 38 0.007 ref|NP_817998.1|gp25 37 0.012 ref|NP_818568.1|gp30 37 0.012 ref|NP_817913.1|gp62 37 0.015 ref|NP_039796.1|Hypothetical protein 35 0.044 >ref|NP_075297.1|gp30 Length = 496 Score = 42.0 bits (97), Expect = 4e-04 Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Frame = +1 Query: 535 GVKGYYIYRDGVKLDVS-VTE-PCFTDEGLTENTTY--RYYVTAYDEAGNESERST 690 G++GY +YR+GV+ + S VTE T GLT T Y + VTA D AGNESE T Sbjct: 4 GLRGYNVYRNGVRQNTSPVTELGSVTITGLTPGTDYSSQITVTAIDMAGNESEPKT 59 >ref|NP_690682.1|hypothetical protein Length = 166 Score = 38.9 bits (89), Expect = 0.003 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Frame = +1 Query: 949 VFSFPGKPLDVGADIIDDNSVRIFWNQVQGISKYNVYRDGE-LIAAEVKAVEFTDTGLTA 1125 +F P P ++ D SV + W+ V+G YNVYR E + A V T TG+ Sbjct: 75 LFPLPNAPQNLTYTATTD-SVTVKWDAVEGADSYNVYRGAEKKLDANVTTTSHTLTGIQP 133 Query: 1126 GRDYEYEVRAVSGDSESVENQRV 1194 V AV+ ES +Q V Sbjct: 134 DTQLTVNVAAVNAGGESPMSQIV 156 >ref|NP_818340.1|gp39 Length = 628 Score = 37.7 bits (86), Expect = 0.007 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%) Frame = +1 Query: 538 VKGYYIYR-------DGVKLDVSVTEPCFTDEGLTENTTYRYYVTAYDEAGNESERS 687 +KGY++Y D V+L+ P + GL NTTY +YV D AG S+ S Sbjct: 3 IKGYFVYAKEKDASGDFVQLNPDPVLPPYGTNGLKSNTTYEFYVKTVDNAGWLSDPS 59 >ref|NP_817358.1|gp20 Length = 628 Score = 37.7 bits (86), Expect = 0.007 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%) Frame = +1 Query: 538 VKGYYIYR-------DGVKLDVSVTEPCFTDEGLTENTTYRYYVTAYDEAGNESERS 687 +KGY++Y D V+L+ P + GL NTTY +YV D AG S+ S Sbjct: 3 IKGYFVYAKEKDAPGDFVQLNPDPVLPPYGTNGLKSNTTYEFYVKTVDNAGWLSDPS 59 >ref|NP_817998.1|gp25 Length = 941 Score = 37.0 bits (84), Expect = 0.012 Identities = 18/36 (50%), Positives = 22/36 (61%) Frame = +1 Query: 601 FTDEGLTENTTYRYYVTAYDEAGNESERSTELVVMT 708 FT +G + T YR Y T D+AGNESE S + V T Sbjct: 27 FTWDGRSSGTVYRVYTTNLDQAGNESEPSAVVEVAT 62 >ref|NP_818568.1|gp30 Length = 281 Score = 37.0 bits (84), Expect = 0.012 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 7/76 (9%) Frame = +1 Query: 970 PLDVGADIIDDNSVRIFWNQVQGISKYNVY----RDG---ELIAAEVKAVEFTDTGLTAG 1128 PL++ + +NS ++ W V G ++Y +Y DG E A + T TGLTAG Sbjct: 195 PLNLTVGTVTNNSAQLLWTPVVGATEYGIYSADDEDGPFEEGTPATSVSANVTQTGLTAG 254 Query: 1129 RDYEYEVRAVSGDSES 1176 + ++V A G ES Sbjct: 255 PVW-FQVTATVGGVES 269 >ref|NP_817913.1|gp62 Length = 496 Score = 36.6 bits (83), Expect = 0.015 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Frame = +1 Query: 535 GVKGYYIYRDGVKL--DVSVTEPCFTDEGLTENTTY--RYYVTAYDEAGNESERST 690 G++GY ++ DGVK+ D GL++ T Y R VTA D AGNESE T Sbjct: 4 GLRGYNVFLDGVKINNDPIPNGGTIPLAGLSQATDYSSRITVTAIDNAGNESEPVT 59 >ref|NP_039796.1|Hypothetical protein Length = 291 Score = 35.0 bits (79), Expect = 0.044 Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 7/98 (7%) Frame = +3 Query: 207 NTYSRDVAVTVSI--RVFYSYAIIYS*CITGIYFYAISVAVTIPYAGFNFYSNTGSGFNF 380 NTY ++ VS VFYSY +YS F + +TI Y G G G F Sbjct: 119 NTYPNEIGFVVSYGSTVFYSYTTLYS------SFAGTQLTITISYTG------NGFGVQF 166 Query: 381 DANANSDPNSDSVSFTFTIGY-----GGTVKTGMFSYY 479 +++N +S SVS + Y G + G + YY Sbjct: 167 -SDSNGFSHSVSVSSVNFVPYGALILGSLIPNGNYYYY 203 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,686,959 Number of Sequences: 14420 Number of extensions: 284882 Number of successful extensions: 967 Number of sequences better than 0.5: 8 Number of HSP's better than 0.5 without gapping: 854 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 963 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1395440781 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig141 (5682 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_570318.1|unknown 33 0.26 >ref|NP_570318.1|unknown Length = 240 Score = 33.5 bits (75), Expect = 0.26 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 31/126 (24%) Frame = -2 Query: 4739 LQKALENNGYEVKKLDLTRQEKVPEDTTVLFFAPPTQDLSVAERDKVLDYL--------- 4587 +Q+ ++ NG + DL+ + V + T L F D+ A + K+ + L Sbjct: 28 MQQFMDENGIGYRYYDLSTGKDVDINNTDLTFEDIGLDIDAASKKKLRELLSEGGQYQGV 87 Query: 4586 ----------KGGGNAIFLFDPS----------NDDERFDNFDRVLNEYS--MALNYDRV 4473 +G G FLFDPS D +F + R+L E + +A+ D + Sbjct: 88 RYDPTFQTNERGAGTETFLFDPSQVRIAKPKVQTDYSKFTGYRRMLEEGADYVAMTKDSI 147 Query: 4472 KENNDM 4455 + N M Sbjct: 148 LQENFM 153 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,497,421 Number of Sequences: 14420 Number of extensions: 633661 Number of successful extensions: 1840 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1632 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1840 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2800969472 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig142 (2546 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,973,221 Number of Sequences: 14420 Number of extensions: 228267 Number of successful extensions: 609 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 579 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 609 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1229626032 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig143 (2293 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_025041.1|putative transposase B 59 2e-09 ref|NP_859396.1|hypothetical protein 58 4e-09 ref|NP_958229.1|gene 55 protein 55 2e-08 ref|NP_536395.1|ISBt3 transposase subunit protein 55 3e-08 ref|NP_851940.1|putative integrase 43 2e-04 ref|NP_817502.1|gp53 42 2e-04 ref|NP_958556.1|putative integrase 40 8e-04 ref|NP_795605.1|putative phage integrase 39 0.002 ref|NP_046850.1|integrase 39 0.002 ref|NP_543053.1|putative integrase 39 0.002 ref|NP_958506.1|putative integrase 39 0.003 ref|NP_620626.1|putative transposase 37 0.007 ref|NP_050109.1|integrase 35 0.035 ref|NP_039697.1|observed 41.8Kd protein 34 0.059 ref|NP_958719.1|Bbp50 33 0.13 ref|NP_996610.1|integrase 33 0.13 ref|NP_996659.1|integrase 33 0.13 ref|NP_510895.1|similar to phage phi 11 integrase 33 0.13 ref|NP_037720.1|integrase 33 0.17 ref|NP_061591.2|integrase 32 0.29 >ref|YP_025041.1|putative transposase B Length = 280 Score = 59.3 bits (142), Expect = 2e-09 Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 4/115 (3%) Frame = +3 Query: 285 LDKTFVIEAIQKAIKR--YGKPEIMNSDQGSQFTSDDYINLLKNNGIKISMDEKGRALDN 458 +D V++ ++ A+K I+++D GSQ+TSDDY L I+ S KG DN Sbjct: 154 MDTDLVLKTLESAVKNRTITGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDN 213 Query: 459 QRIERFFRSYKWEKLY-LEECETVQQLRQITKEYVE-HYNHRRPHQSLDYKTPAE 617 +E F S K E +Y + E + + EYV YN +R H SL Y+TP + Sbjct: 214 APMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQ 268 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 58.2 bits (139), Expect = 4e-09 Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 8/150 (5%) Frame = +3 Query: 225 VYAA-IIDWILGILLV*TINT-LDKTFVIEAIQKAI-KRYGKPEIMNSDQGSQFTSDDYI 395 VY A IID G ++ +++ ++ TFV++A+++A+ R I +SD+GSQ+ S Y Sbjct: 147 VYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYT 206 Query: 396 NLLKNNGIKISMDEKGRALDNQRIERFFRSYKWEKLYLEECETVQQLRQITKEYVEHYNH 575 LK G+ S G + DN E YK E ++ + + ++ T +V+ YN+ Sbjct: 207 ERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNN 266 Query: 576 RRPHQSLDYKTPAE----YYFG-GYDQLLA 650 RR L + PAE YY G D L A Sbjct: 267 RRLLGRLGHTPPAEAEKAYYASIGNDDLAA 296 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 55.5 bits (132), Expect = 2e-08 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Frame = +3 Query: 288 DKTFVIEAIQKAIKRYGKPE--IMNSDQGSQFTSDDYINLLKNNGIKISMDEKGRALDNQ 461 D ++A++ A + GKP + +SDQGS +TS + LL I+ SM +G DN Sbjct: 178 DSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNS 237 Query: 462 RIERFFRSYKWEKL----YLEECETVQQLRQITKEYVEHYNHRRPHQ 590 +ERFFRS K E + Y+ E IT V +Y+ RPH+ Sbjct: 238 PMERFFRSLKNEWMPVVGYVSFSEAA---HAITDYIVGYYSALRPHE 281 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 55.1 bits (131), Expect = 3e-08 Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 5/127 (3%) Frame = +3 Query: 279 NTLDKTFVIEAIQKAIKRYGKPE----IMNSDQGSQFTSDDYINLLKNNGIKISMDEKGR 446 +++ FV++A+++A+ E I +SD+GSQ+ S Y L GI+ S+ +G Sbjct: 148 SSMTTDFVLDALEQALYARQPGEDGTLIHHSDRGSQYVSIRYSERLAEAGIEPSVGSRGD 207 Query: 447 ALDNQRIERFFRSYKWEKLYLE-ECETVQQLRQITKEYVEHYNHRRPHQSLDYKTPAEYY 623 + DN E YK E ++ +T + + T E+V YNH R + L Y PAE Sbjct: 208 SYDNALAETINGLYKTELIHRRAPWKTRESVELATLEWVAWYNHHRLMEPLGYIPPAEAE 267 Query: 624 FGGYDQL 644 Y QL Sbjct: 268 ANYYRQL 274 >ref|NP_851940.1|putative integrase Length = 428 Score = 42.7 bits (99), Expect = 2e-04 Identities = 28/103 (27%), Positives = 49/103 (47%) Frame = -3 Query: 1250 NVKNLSVNTVNNRISTLNEFYKYLTDKKVVSANPVEKIRKIKMQSPPKRVTIDDLMFKRL 1071 ++K SV TVN ++T+ +++ TD S NP + +K +V D L Sbjct: 153 SIKGRSVVTVNYYMTTIAGMFQFATDNGYTSGNPFNGLAPLK----KSKVKPDPLTRDEF 208 Query: 1070 RRQFEHYGREVEKVIFFLLFLTGVRVSELINIKVDDIVINPRS 942 R E + K ++ L TG+R EL+++ +DI + R+ Sbjct: 209 IRFIEACRHQQTKNLWILAVYTGIRHGELVSLAWEDIDLKART 251 >ref|NP_817502.1|gp53 Length = 293 Score = 42.4 bits (98), Expect = 2e-04 Identities = 40/187 (21%), Positives = 87/187 (46%), Gaps = 1/187 (0%) Frame = -3 Query: 1436 IEELLQFFRKHLLENDKSAGTCETYCTNVRLFAEYISETFAEEFDPRKISPLDIREYRNY 1257 + EL + L KSA T Y +V + + E +++PL+ + Sbjct: 6 LAELKDSWLMELRAARKSAETIRAYGGSVEGYLNFCVEG--------ELAPLEKASLLAW 57 Query: 1256 LLNVKNLSVNTVNNRISTLNEFYKYLTDKKVVSANPVEKIRKIKMQSPPKRVTIDDLMFK 1077 + ++ +L TV+ R++ + +F +++ D++ V+ + + +R K+ + D + Sbjct: 58 VNSMASLQPATVHLRLTAVKQFMRWVADEEGVNVDGLLVVRPPKLDQKVVKHLSDRAVQA 117 Query: 1076 RLRRQFEHYGREV-EKVIFFLLFLTGVRVSELINIKVDDIVINPRSGILKVQSGKGMKYR 900 + + R+ +K + L TG+R +E++ + V+D+ + L V+ GKG K R Sbjct: 118 LVATCAGNTFRDRRDKALIVLFTETGIRAAEMLALDVEDVSLVDCQ--LTVRRGKGAKGR 175 Query: 899 EI*CSPL 879 + SP+ Sbjct: 176 RVKYSPM 182 >ref|NP_958556.1|putative integrase Length = 391 Score = 40.4 bits (93), Expect = 8e-04 Identities = 44/193 (22%), Positives = 87/193 (45%), Gaps = 6/193 (3%) Frame = -3 Query: 1487 LYKELNKHMKENF---NATNIEELLQFFRKHLLENDKSAGTCETYCTNVRLFAEYISETF 1317 ++ +L++ +NF + EL + EN K+ T N ++F ++ F Sbjct: 52 VFNKLSQTKPDNFVKQKQIKVSELRDLW----FENYKTQVKESTANKNKQVFDNHVIPDF 107 Query: 1316 AEEFDPRKISPLDIREYRNYLLNVKNLSVNTVNNRISTLNEFYKYLTDKKVVSANPVEKI 1137 ++ KI+ +++++ + K + + I+ N ++Y VS NP+++I Sbjct: 108 GNQYVD-KITVAELQKWADR----KAKQIVKYRDAINEFNALFEYGIRLNYVSENPLKRI 162 Query: 1136 RKIKMQSPPKRVTIDDLMFKRLRRQFEHYGRE---VEKVIFFLLFLTGVRVSELINIKVD 966 K S P+R T ++ + QF +E V+ F LL TG+R SE + + Sbjct: 163 IIPKKTSRPRRDTEHNVYTREELNQFLEVAKEYGLVQYTYFKLLSATGLRKSEALALTWQ 222 Query: 965 DIVINPRSGILKV 927 DI + ++G L + Sbjct: 223 DIDL--KAGTLSI 233 >ref|NP_795605.1|putative phage integrase Length = 388 Score = 38.9 bits (89), Expect = 0.002 Identities = 42/199 (21%), Positives = 87/199 (43%), Gaps = 8/199 (4%) Frame = -3 Query: 1487 LYKELNKHMKENFNATNIEELLQFFRKHLLENDKSAGTC--ETYCTNVRLFAEYISETFA 1314 L E+ + ++ N A N + + ++N AG +TY +F +IS F Sbjct: 51 LLAEIERKIENNEFAYNKNLTVDEYWDIYVDNRLKAGVWSPDTYVERTNIFKNHISPKFG 110 Query: 1313 EEFDPRKISPLDIREYRNYLLNVKNL-SVNTVNNRISTLNEFYKYLTDKKVVSANPVEKI 1137 +K++ ++ EY NY+ N+ N S +TV + + + K++ N ++ I Sbjct: 111 N----KKMNAINRIEYENYINNLLNTNSRSTVKHIYDVFSIMLNHAVKNKMLDDNIIKFI 166 Query: 1136 RKIKMQSPP--KRVTIDDLMF--KRLRRQFEHYGREVEKVIFFLLFLTGVRVSELINIKV 969 + P KR ++ + K R+ + Y + ++ + G+R SE+ IK+ Sbjct: 167 DIGDSEIKPINKRRSMQEFKAWDKVARKMLDDYDYAMVRITYL-----GLRRSEVAGIKL 221 Query: 968 DDIVINPRS-GILKVQSGK 915 +I N + ++K+ + Sbjct: 222 GNITFNDKDCAVVKIDESR 240 >ref|NP_046850.1|integrase Length = 356 Score = 38.9 bits (89), Expect = 0.002 Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 7/191 (3%) Frame = -3 Query: 1469 KHMKENFNATNIEELLQFFRKHLLENDKSAGTCETYCTNVRL-FAEYISETFAEEFDPRK 1293 + K +A +EE + +K + E D + GT + Y T+ R + +T E P Sbjct: 48 REKKAAASAITVEE---YTKKWIAERDLAGGTKDLYSTHARKRIYPVLGDTPVAEMTPAL 104 Query: 1292 ISPLDI---REY---RNYLLNVKNLSVNTVNNRISTLNEFYKYLTDKKVVSANPVEKIRK 1131 + ++Y R + NV +NT + K+VS NP +K Sbjct: 105 VRAWWAGMGKQYPTARRHAYNVLRAVMNTA--------------VEDKLVSENPCRIEQK 150 Query: 1130 IKMQSPPKRVTIDDLMFKRLRRQFEHYGREVEKVIFFLLFLTGVRVSELINIKVDDIVIN 951 + + +T ++L FEHY +V ++L T +R ELI I+ DIV + Sbjct: 151 APAERDVEALTPEELDVVA-GEVFEHY-----RVAVYILAWTSLRFGELIEIRRKDIVDD 204 Query: 950 PRSGILKVQSG 918 + L+V+ G Sbjct: 205 GETMKLRVRRG 215 >ref|NP_543053.1|putative integrase Length = 437 Score = 38.9 bits (89), Expect = 0.002 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Frame = -3 Query: 1235 SVNTVNNRISTLNEFYKYLTDKKVVSANPVEKIRKI-KMQSPPKRVTIDDLMFKRLRRQF 1059 SV TVN ++T+ +++ D + ANP E I+ + K ++ P +T D+ F RL Sbjct: 157 SVVTVNYYMTTIAGMFQFAADHGYLEANPFEGIKPLKKARAEPDPLTRDE--FIRLIDAC 214 Query: 1058 EHYGREVEKVIFFLLFLTGVRVSELINIKVDDI 960 H + K ++ L TG+R EL+++ +DI Sbjct: 215 RH---QQTKNLWSLAVYTGMRHGELVSLAWEDI 244 >ref|NP_958506.1|putative integrase Length = 391 Score = 38.5 bits (88), Expect = 0.003 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 3/165 (1%) Frame = -3 Query: 1412 RKHLLENDKSAGTCETYCTNVRLFAEYISETFAEEFDPRKISPLDIREYRNYLLNVKNLS 1233 R+ EN K+ T N ++F ++ F ++ I + + E + + + K Sbjct: 76 RELWFENYKTQVKESTANKNKQVFDNHVIPAFGNQY----IDKITVAELQKWA-DRKAKQ 130 Query: 1232 VNTVNNRISTLNEFYKYLTDKKVVSANPVEKIRKIKMQSPPKRVTIDDLMFKRLRRQFEH 1053 + + I+ N ++Y VS NP+++I K S P+R T ++ + QF Sbjct: 131 IVKYRDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTQDELNQFLE 190 Query: 1052 YGRE---VEKVIFFLLFLTGVRVSELINIKVDDIVINPRSGILKV 927 ++ V F LL TG+R SE + + D IN +G L V Sbjct: 191 VAKDYGLVPYTYFKLLSATGLRKSEALALTWSD--INLTAGTLSV 233 >ref|NP_620626.1|putative transposase Length = 362 Score = 37.4 bits (85), Expect = 0.007 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 17/123 (13%) Frame = +3 Query: 303 IEAIQKAIKRYGKP-----EIMNSDQGSQFTSD----DYINLLKNNGIKISMDEK----- 440 I+A++KAI + + +D GS+F ++ I++ K N + D+ Sbjct: 232 IDAVKKAISDFKNIFGIIITRIRTDNGSEFINNYRNNQKISVKKTNFTQFLTDKNILHQT 291 Query: 441 ---GRALDNQRIERFFRSYKWEKLYLEECETVQQLRQITKEYVEHYNHRRPHQSLDYKTP 611 N +IERF ++Y ++ E+ L+ +Y YN R H+SL+++TP Sbjct: 292 TPVRSPQSNGKIERFHQNYTKLFVFEEKILNAVSLQNKLNDYYYFYNFERVHKSLNFQTP 351 Query: 612 AEY 620 + Sbjct: 352 FNF 354 >ref|NP_050109.1|integrase Length = 385 Score = 35.0 bits (79), Expect = 0.035 Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 6/175 (3%) Frame = -3 Query: 1457 ENFNATNIEELLQFFRKHLLENDKSAGTCETYCTNVRLFAEYISETFAEEFDPRKISPLD 1278 ++ +++L++ + ++ + T +TY + IS TF + I+ ++ Sbjct: 64 QSIKQITMDKLIEDLQTNMSNQGLAPKTLDTYFACL----SKISRTFGKR-SADSITTIE 118 Query: 1277 IREYRNYLLNVKNLSVNTVNNRISTLNEFYKYLTDKKVVSANPVEKIR-KIKMQSPPKRV 1101 + Y N LL LS T + + + + NP K++ K + K+ Sbjct: 119 LNTYINNLLYKDELSNATAHKYHVVFTKLFDFAIQFGYARKNPALKVKINFKNERAKKQD 178 Query: 1100 TIDD--LMFKRLRRQFEHYGREVEK---VIFFLLFLTGVRVSELINIKVDDIVIN 951 I++ L K L + F H + +F +L+LTG+R+ E + V +I N Sbjct: 179 RIENWYLTDKELSKLFNHCLEKKRNDFYALFKMLYLTGMRLGEGCGLLVKNIFQN 233 >ref|NP_039697.1|observed 41.8Kd protein Length = 371 Score = 34.3 bits (77), Expect = 0.059 Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 1/171 (0%) Frame = -3 Query: 1427 LLQFFRKHLLENDKSAGTCETYCTNV-RLFAEYISETFAEEFDPRKISPLDIREYRNYLL 1251 L ++ RK L+E D + GT + Y + R + E E P + R + Sbjct: 75 LEEYTRKWLVERDLADGTRDLYSGHAERRIYPVLGEVAVTEMTPALV--------RAWWA 126 Query: 1250 NVKNLSVNTVNNRISTLNEFYKYLTDKKVVSANPVEKIRKIKMQSPPKRVTIDDLMFKRL 1071 + + + L + K+++ NP +K + + +T ++L Sbjct: 127 GMGRKHPTARRHAYNVLRAVMNTAVEDKLIAENPCRIEQKAADERDVEALTPEELDIVAA 186 Query: 1070 RRQFEHYGREVEKVIFFLLFLTGVRVSELINIKVDDIVINPRSGILKVQSG 918 FEHY ++ ++L T +R ELI ++ DIV + + L+V+ G Sbjct: 187 EI-FEHY-----RIAAYILAWTSLRFGELIELRRKDIVDDGMTMKLRVRRG 231 >ref|NP_958719.1|Bbp50 Length = 401 Score = 33.1 bits (74), Expect = 0.13 Identities = 21/86 (24%), Positives = 38/86 (44%) Frame = -3 Query: 1241 NLSVNTVNNRISTLNEFYKYLTDKKVVSANPVEKIRKIKMQSPPKRVTIDDLMFKRLRRQ 1062 +L+ TVNN +S + + K++ NP ++ + K Q PP + Sbjct: 148 DLTGKTVNNYVSVIRQALDLAVADKIIKENPASEVPRQKHQKPPPDPFTRAEAEAIIADM 207 Query: 1061 FEHYGREVEKVIFFLLFLTGVRVSEL 984 +HY +V ++ F +G R SE+ Sbjct: 208 AKHYPEQVYNMV-EAWFFSGPRTSEV 232 >ref|NP_996610.1|integrase Length = 401 Score = 33.1 bits (74), Expect = 0.13 Identities = 21/86 (24%), Positives = 38/86 (44%) Frame = -3 Query: 1241 NLSVNTVNNRISTLNEFYKYLTDKKVVSANPVEKIRKIKMQSPPKRVTIDDLMFKRLRRQ 1062 +L+ TVNN +S + + K++ NP ++ + K Q PP + Sbjct: 148 DLTGKTVNNYVSVIRQALDLAVADKIIKENPASEVPRQKHQKPPPDPFTRAEAEAIIADM 207 Query: 1061 FEHYGREVEKVIFFLLFLTGVRVSEL 984 +HY +V ++ F +G R SE+ Sbjct: 208 AKHYPEQVYNMV-EAWFFSGPRTSEV 232 >ref|NP_996659.1|integrase Length = 401 Score = 33.1 bits (74), Expect = 0.13 Identities = 21/86 (24%), Positives = 38/86 (44%) Frame = -3 Query: 1241 NLSVNTVNNRISTLNEFYKYLTDKKVVSANPVEKIRKIKMQSPPKRVTIDDLMFKRLRRQ 1062 +L+ TVNN +S + + K++ NP ++ + K Q PP + Sbjct: 148 DLTGKTVNNYVSVIRQALDLAVADKIIKENPASEVPRQKHQKPPPDPFTRAEAEAIIADM 207 Query: 1061 FEHYGREVEKVIFFLLFLTGVRVSEL 984 +HY +V ++ F +G R SE+ Sbjct: 208 AKHYPEQVYNMV-EAWFFSGPRTSEV 232 >ref|NP_510895.1|similar to phage phi 11 integrase Length = 349 Score = 33.1 bits (74), Expect = 0.13 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Frame = -3 Query: 1544 HYVNRVEQWQKSLMK*QY*LYKELNKHMKENFNATNIEELLQF----FRKHLLENDKSAG 1377 HY+ + K+ + Q E +KH K F + ++ Q FRK+L+EN S Sbjct: 66 HYLENSDLRPKTKRRKQ----NEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIENVASTN 121 Query: 1376 TCETYCTNVRLFAEYISETFAEEFDP 1299 + T + ++ Y + F DP Sbjct: 122 SARTIWSGFKVVINYAKKYFGLRTDP 147 >ref|NP_037720.1|integrase Length = 356 Score = 32.7 bits (73), Expect = 0.17 Identities = 37/178 (20%), Positives = 73/178 (41%) Frame = -3 Query: 1448 NATNIEELLQFFRKHLLENDKSAGTCETYCTNVRLFAEYISETFAEEFDPRKISPLDIRE 1269 N+ + L + K L T Y + ++ + + E+ ++I+ + Sbjct: 72 NSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAM---- 127 Query: 1268 YRNYLLNVKNLSVNTVNNRISTLNEFYKYLTDKKVVSANPVEKIRKIKMQSPPKRVTIDD 1089 Y+ K S + STL++ ++ + ++ NPV R K + R+T D+ Sbjct: 128 LNGYIDEGKAASAKLIR---STLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADE 184 Query: 1088 LMFKRLRRQFEHYGREVEKVIFFLLFLTGVRVSELINIKVDDIVINPRSGILKVQSGK 915 + ++ + E + ++ L +TG RV +L +K DIV G L V+ K Sbjct: 185 --YLKIYQAAESSPCWL-RLAMELAVVTGQRVGDLCEMKWSDIV----DGYLYVEQSK 235 >ref|NP_061591.2|integrase Length = 348 Score = 32.0 bits (71), Expect = 0.29 Identities = 29/134 (21%), Positives = 53/134 (39%) Frame = -3 Query: 1295 KISPLDIREYRNYLLNVKNLSVNTVNNRISTLNEFYKYLTDKKVVSANPVEKIRKIKMQS 1116 KI+ +RNYLLN LSV + + Y + +P + I Sbjct: 100 KITTTQCTAFRNYLLNDAGLSVGYARSVWAGFKAVINYAKKHYKLLYDPTLSVTPIPRTK 159 Query: 1115 PPKRVTIDDLMFKRLRRQFEHYGREVEKVIFFLLFLTGVRVSELINIKVDDIVINPRSGI 936 P + + +++ + R++ K LLF +G+R+ E + ++ D N G Sbjct: 160 PQAKFITREEFDEKVEQITNDTSRQLTK----LLFYSGLRIGEALALQWKD--YNKIKGE 213 Query: 935 LKVQSGKGMKYREI 894 + V + R+I Sbjct: 214 IDVNKKINLSNRKI 227 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,709,088 Number of Sequences: 14420 Number of extensions: 240688 Number of successful extensions: 618 Number of sequences better than 0.5: 20 Number of HSP's better than 0.5 without gapping: 575 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 613 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1101906748 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig144 (6531 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_943883.1|topoisomerase II large subunit 99 4e-21 ref|NP_861694.1|gp60plus39 large subunit topoisomerase II 97 3e-20 ref|NP_061653.1|transposase 89 8e-18 ref|NP_932362.1|topoisomerase II large subunit 84 1e-16 ref|NP_899293.1|topoisomerase II large subunit 82 6e-16 ref|NP_891577.1|topoisomerase II large subunit 72 1e-12 ref|NP_861955.1|gp52 topoisomerase II, medium subunit 71 1e-12 ref|NP_899529.1|topoisomerase II small subunit 69 6e-12 ref|NP_944225.1|gp52 topoisomerase II medium subunit 66 4e-11 ref|NP_049621.1|gp39 topoisomerase II, large subunit, N-terminal... 64 2e-10 ref|NP_049875.1|gp52 topoisomerase II, medium subunit 64 3e-10 ref|NP_932596.1|topoisomerase II medium subunit 57 2e-08 ref|YP_024899.1|putative helicase 37 0.035 ref|NP_040341.1|putative transposase 35 0.077 ref|NP_050128.1|putative DEAH-family helicase 34 0.17 >ref|NP_943883.1|topoisomerase II large subunit Length = 613 Score = 99.4 bits (246), Expect = 4e-21 Identities = 148/613 (24%), Positives = 245/613 (39%), Gaps = 13/613 (2%) Frame = -3 Query: 5593 EILSNSIDEA-REGF--GKVIEVTRFKDRSIMVKDYGRGIPLDYNENEKRYNWELVFCEL 5423 E++ NS+DEA R F IEV KD + VKD GRG+P E V L Sbjct: 53 EVIDNSVDEAIRTNFEHANQIEVV-IKDNQVSVKDNGRGLPQGMVVTP-----EGVEVPL 106 Query: 5422 YAGGKYKNNSGENYEF---SLGLNGLGSCATQYSSEYMDVTVFRDGMRYDLHFEKGENVG 5252 + +G N+ ++G NG+GS T + S+ + + Sbjct: 107 PLAAWTRARAGSNFSADRKTIGKNGVGSALTNFFSDSFVGETGNGTNTVTVRCTNNADEV 166 Query: 5251 GLKKQKWDYESTGTIIKWRPDLEVFTDINIPLEYYTEVLRKQAVVNAGLKFILYDEESDR 5072 + ++ GT + + PD F + ++ E + + ++ + F Sbjct: 167 SYTTKAGKFK--GTNVTFVPDFTRFGVFQLDEDF--EQVIQSRLLTLAVNF------PPI 216 Query: 5071 VFEYCYENGIVDYIKEVSGDKAFTDIQYYETSTRGRDREDKPEYKLKMQIAFCFNNEVNL 4892 F+Y NG K+V G + Q+ + + D + + F + E Sbjct: 217 TFKY---NG-----KKVEGKFSKFAAQFGDVVSHNDDN---------VSLFFATSEEYRQ 259 Query: 4891 LEYYHNSSFLEYGGAPDKAVKNAFVYVIDKFLKSQGKYNKDESRITFQDIQDSLILVSNS 4712 L + N + GG V ++ + +K Q K +++RI +L+ Sbjct: 260 LSFV-NGVHTKQGGNHVYGVLDSLSDELIPMIKRQHKIEINKARIK------ECLLIGLF 312 Query: 4711 FSTITS--YENQTKKSITNKFIQEAMTEFLKEK-LEVYFIENKVECTKILEQVLVNKRSR 4541 + + Y+ QTK+ +++ + Q L K L ++ I+ L K + Sbjct: 313 IRNLVAPKYDGQTKERLSSPWAQIRDHMNLDYKALARKILKTPEVIDPIIASALAKKEAA 372 Query: 4540 ETAEKTRVNIKKKLSGNVDISNRVKKFVDCRSKDVNKREIYIVEGDSALGSCKLARDAEF 4361 + A T+ K K + V K V K +++ EGDSA+G R+ E Sbjct: 373 DKAAATKAQKKAKKAN-------VAKHVAAAGLGRLKTMLFLAEGDSAIGPFTRFRNEET 425 Query: 4360 QAIIPVRGKILNCLKADYDSIFKNEIIVDLLKVLGCGVEIKSKHNRELSTFDLNNLRWSK 4181 Q P+RGK+LN + KN+ I DLL +L VE++SK ++ Sbjct: 426 QGSYPLRGKMLNVWNLPDHEVLKNKEIADLLGIL--NVELRSKEAP----------AYTD 473 Query: 4180 IIICTDADVDGY-QIRTLILAMLYRLVPTLIQVGKVFIAESPLFEIRTKDKTYFAYTDKE 4004 I I TDAD DG I L +A Y+ P + G++ I +P + KT ++Y+ E Sbjct: 474 IAIMTDADQDGKGSIAMLAIAFFYKFWPHWFEQGRIHIVRTPEYISTNGKKTDWSYSRDE 533 Query: 4003 KNEIVSKLKGKYTILRSKGLGE---NDPDMMWQTTMNPETRRLIQVVPDDIKKTEEFFDL 3833 K GK+T KGLG D ++ + E L QVV DD +T E ++ Sbjct: 534 FRS--KKFDGKWTHRHIKGLGSLTVEGDDCEYKQCI--ENLVLEQVVIDD--QTPELLEM 587 Query: 3832 FLGDNLPGRKSYI 3794 GD+ RK ++ Sbjct: 588 LFGDDEHKRKQWL 600 >ref|NP_861694.1|gp60plus39 large subunit topoisomerase II Length = 606 Score = 96.7 bits (239), Expect = 3e-20 Identities = 140/618 (22%), Positives = 255/618 (41%), Gaps = 18/618 (2%) Frame = -3 Query: 5593 EILSNSIDEAREG---FGKVIEVTRFKDRSIMVKDYGRGIP---LDYNENEKRYNWELVF 5432 EI+ NS+DEA F I+V + K+ + V+D GRGIP + E+ + Sbjct: 55 EIIDNSVDEAIRTSFKFANKIDV-QIKNNQVSVEDNGRGIPQGLVTDQTGEQIPGPVAAW 113 Query: 5431 CELYAGGKYKNNSGENYEFSLGLNGLGSCATQYSSEYMDVTVFRDGMRYDLHFEKGENVG 5252 AGG + ++S + G+NG+GS T S T+F G+ D E N Sbjct: 114 TIPKAGGNFGDDSERK---TGGMNGVGSSLTNIFS-----TLFT-GITSDGENEITVNCS 164 Query: 5251 -GLKKQKWDYEST---GTIIKWRPDLEVFTDINIP---LEYYTEVLRKQAVVNAGLKFIL 5093 G++ + W + + GT + + PD F + N+ L+ + L+ AVV +KF Sbjct: 165 NGMENKSWSSKKSKGKGTKVIFTPDFTSFEEHNLSQIYLDITLDRLQTLAVVYPDIKFTF 224 Query: 5092 YDEESDRVFEYCYENGIVDYIKEVSGDKAFTDIQYYETSTRGRDREDKPEYKLKMQIAFC 4913 ++ D F+ + K+ D + K+ IAF Sbjct: 225 NGKKVDGNFKR--------FAKQFGEDNIIQEND-------------------KVSIAFT 257 Query: 4912 FNNEVNLLEYYHNSSFLEYGGAPDKAVKNAFVYVIDKFLKSQGKYNKDESRITFQDIQDS 4733 + + Y N+ + GG + V + + +K + K + ++ ++ Sbjct: 258 TSPDGFRHLTYVNNIHTKNGGHHVECVMDDICEHLLPGIKKKYK-GIEVTKARVKECLTM 316 Query: 4732 LILVSNSFSTITSYENQTKKSITNKFIQ-EAMTEFLKEKLEVYFIENKVECTKILEQVLV 4556 L+ + + + +++QTK+ +T+ + + +K+ ++N+ I+E L Sbjct: 317 LMFIRDMSNM--RFDSQTKERLTSTYGDIRNHIQLDAKKIAQALLKNEALIMPIVEAALA 374 Query: 4555 NKRSRETAEKTRVNIKKKLSGNVDISNRVKKFVDCRSKDVNKREIYIVEGDSALGSCKLA 4376 K + E A +T+ K + + +K + D +++ EGDSA+G Sbjct: 375 RKLAAEKAAETKA---AKKATKAKVHKHIKANQCGKDADTT---LFLTEGDSAIGYLIDV 428 Query: 4375 RDAEFQAIIPVRGKILNCLKADYDSIFKNEIIVDLLKVLGCGVEIKSKHNRELSTFDLNN 4196 RD E P+RGK++N Y + KN+ + D+ + G + K++ N Sbjct: 429 RDRELHGGFPLRGKVMNSWGMSYADMMKNKELFDICAITGLILGEKAE-----------N 477 Query: 4195 LRWSKIIICTDADVDGYQIRTLILAMLYRLVPTLIQVGKVFIAESPLFEIRTKDKTYFAY 4016 + I I TDAD DG L + P L + G++ ++P+ + + Y Sbjct: 478 TNYRNIAIMTDADHDGLGSIYPALLAFFSNWPELFEQGRIRFVKTPVIIAQIGKTQKWFY 537 Query: 4015 TDKEKNEIVSKLKGKYTILRSKGLGENDPDMMWQTTMNPETRRLIQVVPDDIKKT----E 3848 T E E L K++I KGLG + E R++IQ D+ K + Sbjct: 538 TVAEYEEAKDTLP-KHSIRYIKGLGSLE---------KSEYRKMIQNPVYDVVKLPENWK 587 Query: 3847 EFFDLFLGDNLPGRKSYI 3794 E F++ +GD+ RK ++ Sbjct: 588 ELFEMLMGDDSELRKEWM 605 >ref|NP_061653.1|transposase Length = 328 Score = 88.6 bits (218), Expect = 8e-18 Identities = 48/134 (35%), Positives = 70/134 (52%) Frame = -1 Query: 6525 ERKTRYELLFLLDAKDSNTVNEALSELKNCYGKDVSNVFRTITADNGSEFSRLSEMLQGL 6346 ERK+RY L+ + SN++ A++ L K +TIT D G EFS + Sbjct: 197 ERKSRYYYCVLMPDRSSNSMETAINNLIKHLPK---GAVKTITVDRGKEFSCYQNIENQF 253 Query: 6345 GIEAYFTHPYSSWERGTNERHNGLIRRFIPKGKAIKDFSEETIKRIQQWLNSLPRRILGY 6166 I YF PYS+W+RGTNE NGL+R F PK + ++E + +N PR+ L + Sbjct: 254 NINVYFADPYSAWQRGTNENTNGLLREFFPKKTDLAKVNQEQLNYALDSINYRPRKCLNW 313 Query: 6165 KTPEECFNEEIHNL 6124 K P E +E+ +L Sbjct: 314 KFPYEVLCDELLHL 327 >ref|NP_932362.1|topoisomerase II large subunit Length = 607 Score = 84.3 bits (207), Expect = 1e-16 Identities = 151/663 (22%), Positives = 260/663 (39%), Gaps = 31/663 (4%) Frame = -3 Query: 5683 KSLKGAERVRLRPAVIFGSDGIEGCQHSFF-----------------EILSNSIDEAREG 5555 K L E V LRP + GS E + F EI+ NS+DE Sbjct: 6 KVLTPREHVILRPNMYVGSVAYEPHERFLFGKFQSVSYVPGLVKIIDEIIDNSVDEGIRT 65 Query: 5554 ---FGKVIEVTRFK--DRSIMVKDYGRGIPLDYNENEKRYNWELV--FCELYAGGKYKNN 5396 F I++ RF + S+ V D GRGIP E + V + + AG + + Sbjct: 66 DFKFANKIDI-RFDLLEGSVTVVDNGRGIPQSMVETPDGEMPKPVAAWTQTMAGSNFDDT 124 Query: 5395 SGENYEFSLGLNGLGSCATQY-SSEYMDVTVFRDGMRYDLHFEKGENVGGLKKQKWDYES 5219 + S+G+NG+GS T + S +++ T DG + L E + + + Sbjct: 125 N----RVSMGMNGVGSSLTNFFSKKFIGETC--DGKNF-LTVTCSEGASNIDWETKPGKI 177 Query: 5218 TGTIIKWRPDLEVFTDINIP---LEYYTEVLRKQAVVNAGLKFILYDEESDRVFEYCYEN 5048 GT + + PD + F I ++ ++ + +VV +KF + N Sbjct: 178 KGTSVYFIPDEKHFEGRTIDQQIIDIISDRITALSVVFPQIKFTI--------------N 223 Query: 5047 GIVDYIKEVSGDKAFTDIQYYETSTRGRDREDKPEYKLKMQIAFCFNNEVNLLEYYHNSS 4868 G + +K K F D S R IA C + E Y N Sbjct: 224 GQIASMKFADYAKMFGDESLIVESDR-------------FSIAICNSPEGFRQVSYVNGL 270 Query: 4867 FLEYGGAPDKAVKNAFVYVIDKFLKSQGKYNKDESRITFQDIQDSLILVSNSFSTITSYE 4688 ++ GG+ + + + +K + K ++R+ ++++V S + ++ Sbjct: 271 NIKNGGSHIDYLVDGISEELMPAIKKKHKIEISKARVKECL---TMVVVVRGMSNLR-FD 326 Query: 4687 NQTKKSITNKFIQEAMTEFLKE--KLEVYFIENKVECTKILEQVLVNKRSRETAEKTRVN 4514 +QTK+ +TN E + F + KL + I+E L + E A T+ Sbjct: 327 SQTKERLTNP-AGEVKSHFDLDFKKLSKQIMNTDAILQPIIEAALARHLAAEKAAMTKA- 384 Query: 4513 IKKKLSGNVDISNRVKKFVDCRSKDVNKREIYIVEGDSALGSCKLARDAEFQAIIPVRGK 4334 +K + + + +K R+ D+ + +++ EG+SA+G +D +RGK Sbjct: 385 --QKAAAKTNCAKHIKAGEWGRN-DI-ETTLFLTEGESAIGYLLKVKDENLHGGYALRGK 440 Query: 4333 ILNCLKADYDSIFKNEIIVDLLKVLGCGVEIKSKHNRELSTFDLNNLRWSKIIICTDADV 4154 ++N + KN + D+ + G + + D++ ++ I I TDAD Sbjct: 441 VMNTWGMKGSDVLKNNELSDICAITGLDL---------ANPDDISQRKYKNIAIMTDADP 491 Query: 4153 DGY-QIRTLILAMLYRLVPTLIQVGKVFIAESPLFEIRTKDKTYFAYTDKEKNEIVSKLK 3977 DG I +LA R P L G V ++P+ + T + YT E + K Sbjct: 492 DGQGSIYPCLLAFFARW-PKLFDEGSVRFVKTPVVILNKGKNTKWFYTLTEFEKEKKDYK 550 Query: 3976 GKYTILRSKGLGENDPDMMWQTTMNPETRRLIQVVPDDIKKTEEFFDLFLGDNLPGRKSY 3797 G + + KGLG NP I + DD EE F++ LGD+ RK + Sbjct: 551 G-WDLRYIKGLGSLREHEYSDVVNNPNYD--IVDLGDD---WEELFEMLLGDDAALRKEW 604 Query: 3796 IEE 3788 + + Sbjct: 605 MSQ 607 >ref|NP_899293.1|topoisomerase II large subunit Length = 597 Score = 82.4 bits (202), Expect = 6e-16 Identities = 134/618 (21%), Positives = 255/618 (41%), Gaps = 16/618 (2%) Frame = -3 Query: 5593 EILSNSIDEA---REGFGKVIEVTRFKDRSIMVKDYGRGIP----LDYNENEKRYNWELV 5435 E++ NS+DEA + F VIEV + + I + D GRGIP +D + NE E Sbjct: 55 EVIDNSLDEAIRTKFKFANVIEV-KVEGNRITIADNGRGIPQDKVIDPHGNEL-LRPEAA 112 Query: 5434 FCELYAGGKYKNNSGENYEFSLGLNGLGSCATQY-SSEYMDVTVFRDGMRYDLHFEKGEN 5258 + AG ++++ ++G+NG+G+ T Y S +++ T DG + + N Sbjct: 113 WTRTKAGSNFEDD-----RTTVGMNGVGAALTNYFSHQFIGKTC--DG-KNTVTVSCSNN 164 Query: 5257 VGGLKKQKWDYESTGTIIKWRPDLEVFTDINIPLEYYTEVLRKQAVVNAGLKFILYDEES 5078 + + + GT +++ PD F I + + + A ++ I + Sbjct: 165 AERIFVRTSKGGTQGTSVEFIPDFNRFGVFGISPQDEEIIKDRLAALSVAFPEITFKYNG 224 Query: 5077 DRVFEYCYENGIVDYIKEVSGDKAFTDIQYYETSTRGRDREDKPEYKLKMQIAFCFNNEV 4898 + + + Y K D +F D + F N+ + Sbjct: 225 KK-----HAPTLKQYAKMFGTDVSF--------------EFDNVALFIAASDEFRHNSFI 265 Query: 4897 NLLEYYHNSSFLEYGGAPDKAVKNAFVYVIDKFLKSQGKYNKDESRITFQDIQDSL---I 4727 N + + + ++Y N + +K + K N + ++ ++ L + Sbjct: 266 NGVHTINGGTHVDY-------FSNKLADELIPMIKRKHKINVPKPQL-----KNGLTIGL 313 Query: 4726 LVSNSFSTITSYENQTKKSITNKFIQEAMTEFLKE----KLEVYFIENKVECTKILEQVL 4559 + N +++QTK+ +T+ Q ++ +LK+ K+ + + I+E +L Sbjct: 314 FIRNFVDP--KFDSQTKERLTSS--QGDVSPYLKDISYDKIAKKILADDDIIMPIIEALL 369 Query: 4558 VNKRSRETAEKTRVNIKKKLSGNVDISNRVKKFVDCRSKDVNKREIYIVEGDSALGSCKL 4379 + + E E R K+K + N + + +K + + +++ EG SA+G Sbjct: 370 AKQHAAEARELAR---KQKKAQNAKVVDHIKATMPGGT-------LFLTEGKSAIGYLIK 419 Query: 4378 ARDAEFQAIIPVRGKILNCLKADYDSIFKNEIIVDLLKVLGCGVEIKSKHNRELSTFDLN 4199 RD++ IP+RGK+L+ I +N+ + D++ VL N +L D+ Sbjct: 420 VRDSKKHGGIPLRGKVLSTWGKRPAKIMENKELCDIMSVL----------NIQLGNDDIR 469 Query: 4198 NLRWSKIIICTDADVDGY-QIRTLILAMLYRLVPTLIQVGKVFIAESPLFEIRTKDKTYF 4022 ++ + I I DADVDG I L+LA Y P L + ++ +P+ K +T + Sbjct: 470 DMYYHDIGILVDADVDGKGSIFPLLLAFFYNW-PELYKQKRIKFVRTPVVIATNKKETKW 528 Query: 4021 AYTDKEKNEIVSKLKGKYTILRSKGLGENDPDMMWQTTMNPETRRLIQVVPDDIKKTEEF 3842 Y+ E + +KL + I KGLG + P ++V DD Sbjct: 529 FYSIDEYRK--AKLSKTWKIRYIKGLGSLTEKEYKKVINEPV---FDEIVIDD----PSC 579 Query: 3841 FDLFLGDNLPGRKSYIEE 3788 F+L GD+ RK ++ + Sbjct: 580 FELLFGDDTDKRKDWMTQ 597 >ref|NP_891577.1|topoisomerase II large subunit Length = 607 Score = 71.6 bits (174), Expect = 1e-12 Identities = 135/622 (21%), Positives = 241/622 (38%), Gaps = 21/622 (3%) Frame = -3 Query: 5593 EILSNSIDEAREG---FGKVIEVTRFKDRSIMVKDYGRGIP---LDYNENEKRYNWELVF 5432 EI+ NS+DEA F VI V ++ + V D GRGIP + E + + Sbjct: 52 EIIDNSVDEAIRTNFEFANVISVD-IQNNIVTVTDNGRGIPQHMVTTPEGTQIPQPVAAW 110 Query: 5431 CELYAGGKYKNNSGENYEFSLGLNGLGSCATQYSSEYMDVTVFRDGMRYDLHFEKG-ENV 5255 AG + + + + G+NG+GS + + S++ + G EN+ Sbjct: 111 TRTKAGSNFDDTN----RLTQGMNGVGSSLSNFFSDWFTGVTCDGETEMTVQCTNGAENI 166 Query: 5254 GGLKKQKWDYESTGTIIKWRPDLEVFTDI---NIPLEYYTEVLRKQAVVNAGLKFILYDE 5084 K + GT + + PD + F N L+ + L+ +V+ + F + Sbjct: 167 TWSSKPS---KLKGTNVTFCPDFDHFEGYMMDNSVLDIVHDRLQSLSVIFPKITFKFNGK 223 Query: 5083 ESDRVFEYCYENGIVDYIKEVSGDKAFTDIQYYETSTRGRDREDKPEYKLKMQIAFCFNN 4904 F+ DY K + D EDK + + Sbjct: 224 RIVSKFK--------DYAKLYNDDPFVI--------------EDK---NFSLALVPAVEG 258 Query: 4903 EVNLLEYYHNSSFLEYGGAPDKAVKNAFVYVIDKFLKSQGKYNKDESRITFQDIQDSL-- 4730 E + N F + GG V + I K +K + K + +T ++ L Sbjct: 259 EGFKSVSFANGLFTKNGGTHVDYVTDDLCEEIVKRIKKEYKVD-----VTKAAVKSGLTC 313 Query: 4729 ILVSNSFSTITSYENQTKKSITNKFIQEAMTEFLKEKLEVYFIE-NKVECTK---ILEQV 4562 IL+ + +++QTK+ +TN T +K +++ F + KV K I+ + Sbjct: 314 ILIVRELPNLR-FDSQTKERLTNP------TGDIKRHIDLDFKKLAKVIAKKENIIMPII 366 Query: 4561 LVNKRSRETAEKTRVNIKKKLSGNVDISNRVKKFVDCRSKDVNKREIYIVEGDSALGSCK 4382 V +E A+K K + ++ VK + + +++ EGDSA+ Sbjct: 367 AVVLARKEAADKAAATKAAKAAKRAKVAKHVKANLIGTDAETT---LFLTEGDSAINYLI 423 Query: 4381 LARDAEFQAIIPVRGKILNCLKADYDSIFKNEIIVDLLKVLGCGVEIKSKHNRELSTFDL 4202 RD + P+RGK L + I KN I +++ + G + + L Sbjct: 424 SVRDQDLHGGFPLRGKTLTTWEQPEAKIVKNAEIFNIMAITGLQFGVDA----------L 473 Query: 4201 NNLRWSKIIICTDADVDGYQIRTLILAMLYRLVPTLIQVGKVFIAESPLF--EIRTKDKT 4028 + +++ I I TDAD DG L + P L + G++ ++P+ E + D Sbjct: 474 DVMQYKNIAIMTDADTDGIGSIKPSLISFFARWPELFEDGRIRFIKTPIIIAEPKKGDDV 533 Query: 4027 YFAYTDKEKNEIVSKLKGKYTILRSKGLG---ENDPDMMWQTTMNPETRRLIQVVPDDIK 3857 + Y ++ +KG Y I KGL E+D + +N +I +P++ K Sbjct: 534 RWYYDLEDFENDRDNIKG-YNIRYIKGLASLTESD----YHRVINDPVMEII-TLPENYK 587 Query: 3856 KTEEFFDLFLGDNLPGRKSYIE 3791 E FDL ++ RK +++ Sbjct: 588 ---ELFDLLYSEDADQRKIWMQ 606 >ref|NP_861955.1|gp52 topoisomerase II, medium subunit Length = 441 Score = 71.2 bits (173), Expect = 1e-12 Identities = 80/333 (24%), Positives = 137/333 (41%), Gaps = 23/333 (6%) Frame = -2 Query: 3659 LIEQRIVDTLEKNYMPYAMSVIVSRAIPE-IDGLKPSHRKLLYTMYKMGLLTGEKT-KSA 3486 L + + ++ + YAM + +RAIP IDG KP R +++ + EK K A Sbjct: 3 LNSRNLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVHRALDLARGNKEKFHKLA 62 Query: 3485 NVVGQTMKLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMKYAAPRYTEV 3306 ++ G L H + + L P +D +GNFG + K AA RY Sbjct: 63 SIAGGVADLGYHHGESSAQDAGALMANTWNNNYPLLDGQGNFGSRTVQ--KAAASRYIFA 120 Query: 3305 KLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGMASSICSF 3126 ++ K F ++ KDT + D PK PT+L+N GIA G A++I Sbjct: 121 RVSKN----FYNVYKDTEYAPAHEDKEHIPPKFYLPIIPTVLLNGVSGIATGYATNILPH 176 Query: 3125 NLVEVCNAAVEFIKDENTDLVGILKAPDFPTGGQLIYNEREMREIYEKGRGTFKLRAKYR 2946 + V A ++ ++ +N + +FP E R + G +++ Y+ Sbjct: 177 SFKSVKKAVLQALQGKNVTKPKV----EFP----------EFRGEVHEVDGRYEIHGTYK 222 Query: 2945 YDKANSCIEIYEIPYTTTVEAIIDSIADLVKSN------------------KIRDISDVR 2820 + + + ++I EIPY E + + D ++ K R + Sbjct: 223 F-TSRTQMQITEIPYKFDRETYVSKVLDPLEDKGLISWEDDCGEHGFGFKVKFRKEYSLP 281 Query: 2819 DETDLNGLKIALD---IKRNADPDTLMNKLYKL 2730 D+ +L KI D I+R + T++N+ KL Sbjct: 282 DDEELRHEKIMKDFSLIERRSQNITVINEKGKL 314 >ref|NP_899529.1|topoisomerase II small subunit Length = 428 Score = 68.9 bits (167), Expect = 6e-12 Identities = 88/352 (25%), Positives = 148/352 (42%), Gaps = 4/352 (1%) Frame = -2 Query: 3617 MPYAMSVIVSRAIPE-IDGLKPSHRKLLYTMYKMGLLTGEKTKSANVVGQTMKLNPHGDM 3441 + YAM I +RA+ IDGLKP R +LY + K + +K + + N HG+ Sbjct: 14 LEYAMYTIENRALANGIDGLKPVQRFVLYNVIKDASTSFDKVAALGSSVSKIGYN-HGET 72 Query: 3440 AIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMKYAAPRYTEVKLDKICEELFKDIDK 3261 + + L L +P V +GNFG ++ A+ RY KL + FKDI Sbjct: 73 SAQDALA-LMAAEWQNNVPIVQGRGNFGSRMVKES--ASARYVYAKLHDNFDLYFKDIHL 129 Query: 3260 DTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGMASSICSFNLVEVCNAAVEFIKD 3081 ++ D P+ P IL+N GIA G A +I + V A +E++ Sbjct: 130 SP----EHKDLEHVPPQFYVPVLPMILMNGVQGIATGFACNILPHDPEWVKKAVLEYLAG 185 Query: 3080 ENTDLVGILKAPDFPTGGQLIYNEREMREIYEKGR-GTFKLRAKYRYDKANSCIEIYEIP 2904 + ++K P+F Y + E E + + GT ++ + + EIP Sbjct: 186 KEIS-EPVVKFPEF-------YGKIEKLEHNKYAQIGTVEI--------SGLTAVVTEIP 229 Query: 2903 YTTTVEAIIDSIADLVKSNKIRDISDVRDETDLNGLKIALDIKRNADPDTLMNKLYKLTP 2724 I + LV+ KI D ET + + KR A + K Sbjct: 230 TGFDHAKYIIELDKLVEKGKISSYVDETSET----FQFRVRFKRGA--KMTEESVIKTLK 283 Query: 2723 LEDSFSCNFNILINGRPM--VMGVRGILKEWVNFRMDCIKRQTLYDIDKKTQ 2574 L+ +F+ N N++ + VR ++K +V+FRM + ++ + D ++T+ Sbjct: 284 LQSTFTQNINVIDENYQIRHFDDVRELVKWFVDFRMSFLPKR-IQDSTERTE 334 >ref|NP_944225.1|gp52 topoisomerase II medium subunit Length = 438 Score = 66.2 bits (160), Expect = 4e-11 Identities = 88/358 (24%), Positives = 155/358 (43%), Gaps = 6/358 (1%) Frame = -2 Query: 3659 LIEQRIVDTLEKNYMPYAMSVIVSRAIPE-IDGLKPSHRKLLYTMYKMGLLTGEKTKSAN 3483 +I++ I + +AM I RA+P +DGLKP R +L+++ K E K+A Sbjct: 3 VIKRGISSLVNNEAKEFAMYTIEERALPSMVDGLKPVQRYILFSVLKNA--GREFKKNAA 60 Query: 3482 VVGQTMKLN-PHGDMAIYET--LVRLTRGNGALLLPYVDSKGNFGKHYSRDMKYAAPRYT 3312 V G + HG+MA + L+ T N P + +GNFG ++ AA RY Sbjct: 61 VAGVISEYGYNHGEMAAMDAACLMASTWNNN---FPVIQGRGNFGCRAVQEG--AAARYI 115 Query: 3311 EVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGMASSIC 3132 + E +FKD++ + DG++ LP PT+L+N GIA G A+ I Sbjct: 116 FCSKHERFESMFKDME---LLEESTADGSILPRYYLPI-LPTVLLNGVSGIATGFATKIM 171 Query: 3131 SFNLVEVCNAAVEFIKDENTDLVGILKAPDFPTGGQLIYNEREMREIYEKGRGTFKLRAK 2952 ++ V + +K D I + P F G+++ E E + K G ++L K Sbjct: 172 PHSVQSVAKCVEQVLKSGKCDEPEI-QFPKF--FGKILSIEGETQS--WKVEGDYELSGK 226 Query: 2951 YRYDKANSCIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDETDLNGLKIALDIKR 2772 + + I E+P + + LV+++KI DE+ + + + Sbjct: 227 TK-------LIINELPPKYDRLKYVTHLNKLVETDKIVGY----DESKMKDREFCFKVTL 275 Query: 2771 NADPDTLMNKLYKLTPLEDSFSCNFNIL-INGR-PMVMGVRGILKEWVNFRMDCIKRQ 2604 D D + K+ L + S ++ NG ++ ++VNFR + ++++ Sbjct: 276 KRDFDVSHENIIKVFKLSQNVSQYIRVIDQNGNLKPYDNASDLIVDFVNFRFNVLQKR 333 >ref|NP_049621.1|gp39 topoisomerase II, large subunit, N-terminal region Length = 516 Score = 64.3 bits (155), Expect = 2e-10 Identities = 122/532 (22%), Positives = 212/532 (39%), Gaps = 36/532 (6%) Frame = -3 Query: 5686 IKSLKGAERVRLRPAVIFGSDGIEGCQHSFF-----------------EILSNSIDEA-- 5564 IK L E ++ R + GS E + F EI+ NS+DE Sbjct: 6 IKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDEGIR 65 Query: 5563 -REGFGKVIEVTRFKDRSIMVKDYGRGIP---LDYNENEKRYNWELVFCELYAGGKYKNN 5396 + F I VT K+ + V+D GRGIP + E+ + AGG N Sbjct: 66 TKFKFANKINVT-IKNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGG----N 120 Query: 5395 SGENYE-FSLGLNGLGSCATQYSSEYMDVTVFRDGMRYDLHFEKGENVGGLKKQKWDY-- 5225 G++ E + G+NG+GS T S M V DG + G++ + W+ Sbjct: 121 FGDDKERVTGGMNGVGSSLTNIFS-VMFVGETGDGQNNIVV----RCSNGMENKSWEDIP 175 Query: 5224 -ESTGTIIKWRPDLEVFTDINIPLEYYTEV----LRKQAVVNAGLKFILYDEESDRVFEY 5060 + GT + + PD F + N + Y ++ L+ AVV ++F Sbjct: 176 GKWKGTRVTFIPDFMSF-ETNELSQVYLDITLDRLQTLAVVYPDIQFTF----------- 223 Query: 5059 CYENGIVDYIKEVSGDKAFTDIQYYETSTRGRDREDKPEYKLKMQIAFCFNNE-VNLLEY 4883 NG K+V G+ ++ R D + + IA + + L Y Sbjct: 224 ---NG-----KKVQGN--------FKKYARQYDEHAIVQEQENCSIAVGRSPDGFRQLTY 267 Query: 4882 YHNSSFLEYGGAPDKAVKNAFVYVIDKFLKSQGKYNKDESRITFQDIQDSLILVSNSFST 4703 +N G D A+ + +I + + K+ D ++ ++ ++ V + + Sbjct: 268 VNNIHTKNGGHHIDCAMDDICEDLIPQIKR---KFKIDVTKARVKECLTIVMFVRDMKNM 324 Query: 4702 ITSYENQTKKSITNKFIQ-EAMTEFLKEKLEVYFIENKVECTKILEQVLVNKRSRETAEK 4526 QTK+ +T+ F + + + +K+ + N+ I+E L K + E A + Sbjct: 325 --RLIRQTKERLTSPFGEIRSHIQLDAKKISRDILNNEAILMPIIEAALARKLAAEKAAE 382 Query: 4525 TRVNIKKKLSGNVDISNRVKKFVDCRSKDVNKREIYIVEGDSALGSCKLARDAEFQAIIP 4346 T+ K + + +K + + D +++ EGDSA+G RD E P Sbjct: 383 TKA---AKKASKAKVHKHIKANLCGKDADTT---LFLTEGDSAIGYLIDVRDKELHGGYP 436 Query: 4345 VRGKILNCLKADYDSIFKNEIIVDLLKVLGCGVEIKS---KHNRELSTFDLN 4199 +RGK+LN Y + KN+ + D+ + G + K+ K + E TF+LN Sbjct: 437 LRGKVLNSWGMSYADMLKNKELFDICAITGLVLGEKAFEEKEDGEWFTFELN 488 >ref|NP_049875.1|gp52 topoisomerase II, medium subunit Length = 442 Score = 63.5 bits (153), Expect = 3e-10 Identities = 74/278 (26%), Positives = 119/278 (42%), Gaps = 7/278 (2%) Frame = -2 Query: 3674 MLTNNLIEQRIVDTLEKNYMPYAMSVIVSRAIPE-IDGLKPSHRKLLYTMYKMGLLTGEK 3498 M NN + I+D + YAM + +RAIP IDG KP R ++ + L G K Sbjct: 1 MQLNNRDLKSIIDN---EALAYAMYTVENRAIPNMIDGFKPVQRFVIARA--LDLARGNK 55 Query: 3497 TKS---ANVVGQTMKLN-PHGDMAIYET--LVRLTRGNGALLLPYVDSKGNFGKHYSRDM 3336 K A++ G L HG+ + + L+ T N P +D +GNFG + Sbjct: 56 DKFHKLASIAGGVADLGYHHGENSAQDAGALMANTWNNN---FPLLDGQGNFGSRTVQ-- 110 Query: 3335 KYAAPRYTEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIA 3156 K AA RY ++ K ++KD + V + D P PT+L+N GIA Sbjct: 111 KAAASRYIFARVSKNFYNVYKDTEYAPV----HQDKEHIPPAFYLPIIPTVLLNGVSGIA 166 Query: 3155 VGMASSICSFNLVEVCNAAVEFIKDENTDLVGILKAPDFPTGGQLIYNEREMREIYEKGR 2976 G A+ I ++ V A ++ ++ + + +FP E R + Sbjct: 167 TGYATYILPHSVSSVKKAVLQALQGKKVTKPKV----EFP----------EFRGEVVEID 212 Query: 2975 GTFKLRAKYRYDKANSCIEIYEIPYTTTVEAIIDSIAD 2862 G +++R Y++ + + + I EIPY E + I D Sbjct: 213 GQYEIRGTYKF-TSRTQMHITEIPYKYDRETYVSKILD 249 >ref|NP_932596.1|topoisomerase II medium subunit Length = 555 Score = 57.0 bits (136), Expect = 2e-08 Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 16/210 (7%) Frame = -2 Query: 3674 MLTNNLIE---QRIVDTLEKNYMPYAMSVIVSRAIPE-IDGLKPSHRKLLYTMYKMGLLT 3507 +L+N+L E + + + + +AM + RAIP IDGLKP R +Y + Sbjct: 102 ILSNHLTELHNRSLQSIINHEALEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQN 161 Query: 3506 GEK-TKSANVVGQTMKLNPH---GDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRD 3339 K K A + G + H G A L+ T N +P ++ GNFG + Sbjct: 162 RSKFNKVAALAGGVSEAGYHHGEGSAAGAGQLIANTWNNN---IPILEGDGNFGSRMVQ- 217 Query: 3338 MKYAAPRYTEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATF-----PTILVN 3174 + AAPRY ++ + ++++DI+ V EP+ LP + P +L N Sbjct: 218 -QAAAPRYVFCRVHQNFWDIYRDIELAPVH---------PEPEHLPPRYYLPVIPMVLAN 267 Query: 3173 ANHGIAVGMASSICSF---NLVEVCNAAVE 3093 GIA G A++I +L++ AA+E Sbjct: 268 GVKGIATGYATNIFPHSYKSLIKCTKAAIE 297 >ref|YP_024899.1|putative helicase Length = 614 Score = 36.6 bits (83), Expect = 0.035 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Frame = -2 Query: 407 QPEAIDKLVEGINRGYRGQTLLGVTGSGKTFTMANVIERVQKPTLVIAHNKTLAAQLCSE 228 Q + D + + +RG R + TGSGKT T + VQ + +AH + L QL + Sbjct: 53 QQQIKDAVFDAWSRGARTVMAVSATGSGKTVTAEAIASEVQGEGVAMAHRRELVGQLSLQ 112 Query: 227 F-KEFFPNNCV 198 + + P+N + Sbjct: 113 WARAGIPHNII 123 >ref|NP_040341.1|putative transposase Length = 322 Score = 35.4 bits (80), Expect = 0.077 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 1/117 (0%) Frame = -1 Query: 6480 DSNTVNEALSELKNCYGKD-VSNVFRTITADNGSEFSRLSEMLQGLGIEAYFTHPYSSWE 6304 +++T E + K+ K+ + + I D EFS+ EM + YF S + Sbjct: 206 ENHTAREVEKKFKDIIIKNNLIGKIKGIITDRRKEFSKWREMEIFAETQVYFCDAGSPQQ 265 Query: 6303 RGTNERHNGLIRRFIPKGKAIKDFSEETIKRIQQWLNSLPRRILGYKTPEECFNEEI 6133 + E N +R + PKG S++ I + +N R L + + +E F + I Sbjct: 266 KPLIEYMNSELRHWFPKGTDFNKVSQKQIDWVVNVINDKLRPCLNWISSKEMFLQNI 322 >ref|NP_050128.1|putative DEAH-family helicase Length = 455 Score = 34.3 bits (77), Expect = 0.17 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Frame = -2 Query: 407 QPEAIDKLVEGINRGYRGQTLLGVTGSGKTFTMANVIERVQ---KPTLVIAHNKTLAAQL 237 Q + ID L + G++ + GSGK+ TMA + +R+ + L + H + L Q+ Sbjct: 9 QKKLIDDLRLSLKHGHKNVLIQSPAGSGKSITMAELAKRITSNGERVLFVVHRRELVKQI 68 Query: 236 CSEFKEFFPN 207 + F + N Sbjct: 69 KNTFSSWGVN 78 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,220,165 Number of Sequences: 14420 Number of extensions: 697971 Number of successful extensions: 1831 Number of sequences better than 0.5: 15 Number of HSP's better than 0.5 without gapping: 1618 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1824 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 3211839954 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig146 (5017 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_038305.1|ORF5 47 2e-05 ref|NP_075485.1|hypothetical protein 46 4e-05 ref|NP_803371.1|dnaC 46 4e-05 ref|NP_061611.1|orf 21 45 7e-05 ref|NP_862860.1|gp21 42 5e-04 ref|NP_958645.1|77ORF013 40 0.002 ref|YP_025058.1|DnaC 38 0.009 ref|NP_510917.1|similar to Escherichia coli DnaC 38 0.012 ref|NP_839903.1|putative DnaC protein 36 0.035 ref|NP_076710.1|DnaC 36 0.035 ref|NP_945251.1|DnaC protein 34 0.13 ref|NP_944257.1|putative DnaC 33 0.22 >ref|NP_038305.1|ORF5 Length = 260 Score = 47.4 bits (111), Expect = 2e-05 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 4/150 (2%) Frame = +3 Query: 270 NVILIGNSGVGKTHIA----TALGYEACRQGMKVKFYTAAGLINELLAAQQEYRLNKLEK 437 N++LIGN+GVGK+H+A AL + G+ + I E + EY E Sbjct: 121 NIVLIGNTGVGKSHLAYSALKALSDHTKKMGVFINVVDLLAKIKEDFNLEAEYIRRISEA 180 Query: 438 QWLAPHLVILDELGYVPFSKIGAELLFQFCSSRYERGSLIITTNLEFPRWTEVLGDEQMT 617 +WL +LD+LG ++ + +L+ + +R IITTNL P+ ++LG Sbjct: 181 EWL-----VLDDLGTEKVTEWSSGILYSILN---KRTKTIITTNLS-PQ--DILG--TYG 227 Query: 618 AALLDRLTHNAHILNINGESYRFKQALSKQ 707 + R+ + N Y+FK K+ Sbjct: 228 KRVYSRIFKKTGLGTTNEHVYQFKTQQDKR 257 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 45.8 bits (107), Expect = 4e-05 Identities = 45/218 (20%), Positives = 103/218 (47%), Gaps = 7/218 (3%) Frame = +3 Query: 63 NNLDYEEYLLCVLEQEVHQRENNRIQRGIRQAGF-PVIK--TIESFDFLAIPSLN-KPRV 230 N +Y++ C + +E + + +I Q+ P ++ T++++ ++ K Sbjct: 47 NGYEYKDGCKCEIYEEYKRNKQRKINNIFNQSNVNPSLRDATVKNYKPQNEKQVHAKQTA 106 Query: 231 LKLMQGEYIRRRENVILIGNSGVGKTHIATALGYEACRQGMKVKFYTAAGLINELLAAQQ 410 ++ +QG + +++IL G+ G GK+H+A A+ +G V F L++ + A Sbjct: 107 IEYVQGFSTKEPKSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYN 166 Query: 411 EYRL---NKLEKQWLAPHLVILDELGYVPFSKIGAELLFQFCSSRYERGSLIITTNLEFP 581 + + ++L + L++LD++G V ++ LF +R + + I TTN Sbjct: 167 KNAVETTDELVRLLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTNFSDK 224 Query: 582 RWTEVLGDEQMTAALLDRLTHNAHILNINGESYRFKQA 695 + + +++ + R+ HNA + + G+ +R + A Sbjct: 225 ELNQNMNWQRINS----RMKHNARKVRVIGDDFRERDA 258 >ref|NP_803371.1|dnaC Length = 259 Score = 45.8 bits (107), Expect = 4e-05 Identities = 45/218 (20%), Positives = 103/218 (47%), Gaps = 7/218 (3%) Frame = +3 Query: 63 NNLDYEEYLLCVLEQEVHQRENNRIQRGIRQAGF-PVIK--TIESFDFLAIPSLN-KPRV 230 N +Y++ C + +E + + +I Q+ P ++ T++++ ++ K Sbjct: 47 NGYEYKDGCKCEIYEEYKRNKQRKINNIFNQSNVNPSLRDATVKNYKPQNEKQVHAKQTA 106 Query: 231 LKLMQGEYIRRRENVILIGNSGVGKTHIATALGYEACRQGMKVKFYTAAGLINELLAAQQ 410 ++ +QG + +++IL G+ G GK+H+A A+ +G V F L++ + A Sbjct: 107 IEYVQGFSTKEPKSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYN 166 Query: 411 EYRL---NKLEKQWLAPHLVILDELGYVPFSKIGAELLFQFCSSRYERGSLIITTNLEFP 581 + + ++L + L++LD++G V ++ LF +R + + I TTN Sbjct: 167 KNAVETTDELVRLLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTNFSDK 224 Query: 582 RWTEVLGDEQMTAALLDRLTHNAHILNINGESYRFKQA 695 + + +++ + R+ HNA + + G+ +R + A Sbjct: 225 ELNQNMNWQRINS----RMKHNARKVRVIGDDFRERDA 258 >ref|NP_061611.1|orf 21 Length = 257 Score = 45.1 bits (105), Expect = 7e-05 Identities = 38/162 (23%), Positives = 79/162 (48%), Gaps = 3/162 (1%) Frame = +3 Query: 219 KPRVLKLMQGEYIRRRENVILIGNSGVGKTHIATALGYEACRQGMKVKFYTAAGLINELL 398 K ++ +QG + +++IL G+ G GK+H+A A+ +G V F L++ + Sbjct: 101 KQTAIEYVQGFSTKEPKSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIQMLMDRIK 160 Query: 399 AAQQEYRL---NKLEKQWLAPHLVILDELGYVPFSKIGAELLFQFCSSRYERGSLIITTN 569 AA + + ++L + L++LD++G V ++ LF +R + + I TTN Sbjct: 161 AAYNKNAVETTDELVRLLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTN 218 Query: 570 LEFPRWTEVLGDEQMTAALLDRLTHNAHILNINGESYRFKQA 695 + + +++ + R+ HNA + + G+ +R + A Sbjct: 219 FSDKELNQNMNWQRINS----RMKHNARKVRVIGDDFRERDA 256 >ref|NP_862860.1|gp21 Length = 256 Score = 42.4 bits (98), Expect = 5e-04 Identities = 40/168 (23%), Positives = 79/168 (47%), Gaps = 4/168 (2%) Frame = +3 Query: 177 TIESFDFLAIPSLNKPRVLKLMQGEYIR-RRENVILIGNSGVGKTHIATALGYEACRQGM 353 T+++FD K +K + E+ R N++ G +G GK+H+A A+ Sbjct: 88 TLDNFDTPTEKEAEKLAFVKRICREWSEGARNNIVFQGEAGTGKSHLAFAMMKYLSETTK 147 Query: 354 KVK-FYTAAGLINELLA--AQQEYRLNKLEKQWLAPHLVILDELGYVPFSKIGAELLFQF 524 ++ F L+ ++ A +Q+E+ +NK+ + ++LD+LG S+ +L+ Sbjct: 148 EIAIFINVTDLLMKIKADFSQEEFLVNKI----ASAKFLVLDDLGMEKDSEWSFSILYNI 203 Query: 525 CSSRYERGSLIITTNLEFPRWTEVLGDEQMTAALLDRLTHNAHILNIN 668 + +R + +ITTNL + G M+ L + N+H++ N Sbjct: 204 LN---KRANTVITTNLTAQEIQKRYGRPFMSR--LMKGVDNSHLMVFN 246 >ref|NP_958645.1|77ORF013 Length = 259 Score = 40.0 bits (92), Expect = 0.002 Identities = 43/218 (19%), Positives = 101/218 (46%), Gaps = 7/218 (3%) Frame = +3 Query: 63 NNLDYEEYLLCVLEQEVHQRENNRIQRGIRQAGF-PVIK--TIESFDFLAIPSLN-KPRV 230 N +Y++ C + +E + + +I Q+ P ++ T++++ ++ K Sbjct: 47 NGYEYKDGCKCEIYEEYKRNKQRKINNIFNQSNVNPSLRDATVKNYKPQNEKQVHAKQTA 106 Query: 231 LKLMQGEYIRRRENVILIGNSGVGKTHIATALGYEACRQGMKVKFYTAAGLINELLAAQQ 410 ++ +QG + +++IL G+ G GK+H+A A+ +G V F L++ + A Sbjct: 107 IEYVQGFSTKEPKSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYN 166 Query: 411 EYRL---NKLEKQWLAPHLVILDELGYVPFSKIGAELLFQFCSSRYERGSLIITTNLEFP 581 + + ++L + L++LD++G V ++ LF +R + + I TTN Sbjct: 167 KNAVETTDELVRLLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTNFSDK 224 Query: 582 RWTEVLGDEQMTAALLDRLTHNAHILNINGESYRFKQA 695 + + +++ + R+ A + + G+ +R + A Sbjct: 225 ELNQNMNWQRINS----RMKKRARKVRVIGDDFRERDA 258 >ref|YP_025058.1|DnaC Length = 260 Score = 38.1 bits (87), Expect = 0.009 Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 18/121 (14%) Frame = +3 Query: 267 ENVILIGNSGVGKTHIATALGYEACRQGMKVKFYTAAGLIN----ELLAAQQEYRLNKLE 434 ENVIL G G GKT +A A+ +G F + A L N + A RL +E Sbjct: 102 ENVILFGPRGAGKTSLALAMLTSLRDEGQSGLFISTAELSNLMGLQYDAPDVRLRLVGIE 161 Query: 435 KQWLAPHLVILDELG--------YVPFSKIGAELLFQFCSSRYE------RGSLIITTNL 572 + +++LD+ G P + EL+++ ++R + R S IITTN Sbjct: 162 RAMKEAGVLLLDDFGTEGGMKLDIKPVRRDMQELIYRVANARLDFESNRPRLSTIITTNN 221 Query: 573 E 575 E Sbjct: 222 E 222 >ref|NP_510917.1|similar to Escherichia coli DnaC Length = 259 Score = 37.7 bits (86), Expect = 0.012 Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 3/162 (1%) Frame = +3 Query: 219 KPRVLKLMQGEYIRRRENVILIGNSGVGKTHIATALGYEACRQGMKVKFYTAAGLINELL 398 K ++ +QG + +++I G+ G GK+H+A A+ +G V F L++ + Sbjct: 103 KQSAIEYVQGFSTKEPKSLIFQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIK 162 Query: 399 AAQQEYRL---NKLEKQWLAPHLVILDELGYVPFSKIGAELLFQFCSSRYERGSLIITTN 569 A + + ++L K L++LD++G V ++ LF +R + + I TTN Sbjct: 163 ATYNKNAVETTDELVKLLSEIDLLVLDDMG-VENTEHTINKLFSIVDNRVGKNN-IFTTN 220 Query: 570 LEFPRWTEVLGDEQMTAALLDRLTHNAHILNINGESYRFKQA 695 + + +++ + R+ A + + G+ +R + A Sbjct: 221 FSDKELNQNMNWQRINS----RMKKRARKVRVIGDDFRERDA 258 >ref|NP_839903.1|putative DnaC protein Length = 294 Score = 36.2 bits (82), Expect = 0.035 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 16/144 (11%) Frame = +3 Query: 189 FDFLAIPSLNKPRVLKLMQG---EYIR-RRENVILIGNSGVGKTHIATALGYEACRQGMK 356 F+ SL + VL Q EY + +R N + +G +G GK+H+A A+ E Sbjct: 115 FNTFKANSLEEQNVLNQAQRIAREYTQGQRFNTVFVGGAGRGKSHLAMAILQEVNENLKD 174 Query: 357 VKFYTAAGLINELLAA---QQEYRLNKLEKQWLAP-----HLVILDELG-YVPFSKIGA- 506 KF T I+EL+ Y K E++ L L+++D+LG FSK + Sbjct: 175 NKFSTLFINISELIREIKNSWNYSDTKAEEERLTTLMRTVDLLVIDDLGTESTFSKDNSW 234 Query: 507 --ELLFQFCSSRYERGSLIITTNL 572 +++ ++R G+ IIT+NL Sbjct: 235 VQGVIYNIYNAR--EGNTIITSNL 256 >ref|NP_076710.1|DnaC Length = 294 Score = 36.2 bits (82), Expect = 0.035 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 16/144 (11%) Frame = +3 Query: 189 FDFLAIPSLNKPRVLKLMQG---EYIR-RRENVILIGNSGVGKTHIATALGYEACRQGMK 356 F+ + L + VL Q EY + +R N + +G +G GK+H+A A+ E Sbjct: 115 FNTFKVNGLEEQNVLNQAQRIAREYTQGQRFNTVFVGGAGRGKSHLAMAILQEVNENLKD 174 Query: 357 VKFYTAAGLINELLAA---QQEYRLNKLEKQWLAP-----HLVILDELG-YVPFSKIGA- 506 KF T I+EL+ Y K E++ L L+++D+LG FSK + Sbjct: 175 DKFSTLFINISELIREIKNSWNYSDTKAEEERLTTLMRTVDLLVIDDLGTESTFSKDNSW 234 Query: 507 --ELLFQFCSSRYERGSLIITTNL 572 +++ ++R G+ IIT+NL Sbjct: 235 VQGVIYNIYNAR--EGNTIITSNL 256 >ref|NP_945251.1|DnaC protein Length = 270 Score = 34.3 bits (77), Expect = 0.13 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 10/124 (8%) Frame = +3 Query: 231 LKLMQGEYIRRRENVILIGNSGVGKTHIATALG------YEACRQGMKVKFYTAAGLINE 392 L++++ + R N +++G +G GKTH+A A+ ++A V F + + Sbjct: 111 LRVVRHYFNDGRGNAVIVGQAGRGKTHLAIAIAKKLNIDFKANNNPKSVLFMNVPAMFQK 170 Query: 393 LLAAQQEYRLNKLEKQWL----APHLVILDELGYVPFSKIGAELLFQFCSSRYERGSLII 560 + + + + + +WL +ILD+ G S+ + L+ S R I+ Sbjct: 171 IQSGFNK-KDARTTDEWLDLLKKVDYLILDDFGKGDQSQWKQDFLYNLLDS---RDKTIV 226 Query: 561 TTNL 572 TTNL Sbjct: 227 TTNL 230 >ref|NP_944257.1|putative DnaC Length = 265 Score = 33.5 bits (75), Expect = 0.22 Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 12/218 (5%) Frame = +3 Query: 72 DYEEYLLCVLEQEVHQRENNRIQRGIRQAGFPVIKTIESFDFLAIPSLNKPRVLKLMQG- 248 + EE E+ V Q RI+ + +G P+ +F+ + + L + + Sbjct: 57 EQEELEARAREERVRQE---RIEARLNASGIPLAFRDRTFENFVAETDEQRYALDVARSF 113 Query: 249 ------EYIRRRENVILIGNSGVGKTHIATALGYEACRQGMKVKFYTAAGLINELLAAQQ 410 +++ + +I GN G GK+H+A A+ R + + A LI + A + Sbjct: 114 AENFWTKHLPAGDFLIFGGNPGTGKSHLALAIQQYVMRHSTAM-YLDAMALIRRVRATWR 172 Query: 411 ----EYRLNKLEKQWLAPHLVILDELGYVPFSKIGAELLFQFCSSRY-ERGSLIITTNLE 575 + L L+ +DE+G + ++F+ + RY + I+ TNL Sbjct: 173 RDAPQSEEEVLHTLGFTVDLLAIDEIGVQRGTDDEQAIVFEIINRRYRDLRPTILMTNLN 232 Query: 576 FPRWTEVLGDEQMTAALLDRLTHNAHILNINGESYRFK 689 + LG A +DRL +L S+R K Sbjct: 233 GAGLKDFLG-----ARTMDRLYERGTMLPFMWPSHRRK 265 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,994,865 Number of Sequences: 14420 Number of extensions: 477331 Number of successful extensions: 1338 Number of sequences better than 0.5: 12 Number of HSP's better than 0.5 without gapping: 1214 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1337 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2453974370 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig147 (6037 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_024980.1|major tail subunit 33 0.46 >ref|YP_024980.1|major tail subunit Length = 743 Score = 32.7 bits (73), Expect = 0.46 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +1 Query: 4258 TNNGTLMDAPVSTMAGLVAPVAVSPLKPGSVSVTSSSTKLGGSIPKT 4398 TN TL P+ ++PV+ SPL+P V+ T+S GG+ P T Sbjct: 380 TNKITLDVIPLVVPTVSISPVSASPLEPAPVTFTASVVDDGGAPPVT 426 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,766,921 Number of Sequences: 14420 Number of extensions: 611430 Number of successful extensions: 1675 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1497 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1673 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2956317489 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig148 (6850 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046564.1|unknown 63 4e-10 ref|NP_899518.1|heme biosynthesis domain protein 52 8e-07 ref|NP_899507.1|moaA 38 0.016 ref|NP_899506.1|moaA 34 0.23 >ref|NP_046564.1|unknown Length = 177 Score = 63.2 bits (152), Expect = 4e-10 Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 2/174 (1%) Frame = -1 Query: 3307 ERLILRKLKISDDKDIFEYAKDPEVSRYVTWEPHKSIEDARAFINWNLERYNKGEIGEWA 3128 E L LR ++ +D IF+ D + + +S + R W E+ K E A Sbjct: 9 ENLTLRAIQ-PEDIVIFDSLDDEILRNMDSLHFPRSANNMR---EWVEEQLEKDEFRFIA 64 Query: 3127 IELKETGRVIGSIGFVELDRINFCGTVGYALS--RKYWGKGIMTEAVRRIIRFAFEEMGL 2954 +E ++G I + DR N GT GY L+ Y GKG E + ++RF F E+ Sbjct: 65 VE--SDNNIVGMIETFDCDRKN--GTFGYYLAVFEPYRGKGFAKEMILMVLRFFFLELAY 120 Query: 2953 NRVEAVHIPENEASGRVMQKAGMMYEGLLRQRMFAKGRFWDLKQYAIIKDDVQL 2792 +V N S R+ +K G M EG LR+ +F KG ++D + + +++ +L Sbjct: 121 QKVNTTVYSFNNPSIRLHEKLGFMKEGQLRKIIFTKGAYYDGICFGMTREEFEL 174 >ref|NP_899518.1|heme biosynthesis domain protein Length = 350 Score = 52.0 bits (123), Expect = 8e-07 Identities = 57/268 (21%), Positives = 112/268 (41%), Gaps = 10/268 (3%) Frame = -2 Query: 5487 EMQLELFFVDFLRVWNKEVCENYTTAAVHRVEFSKGYIELPVLSEVALTYACNIKCRFCY 5308 E + ++F D L + KE C +Y + + + E P ++ ++ CN+ CR CY Sbjct: 53 EHRAKMFEYDTLPEYCKE-CMSYGELSDQKYFEYEALEEHPRTIQILMSNKCNLACRMCY 111 Query: 5307 AGCTKVKKNRELDKEGFKKVLDIIRYEAEVP----SVSFTGGEPLLNKNLPELIKYASKA 5140 +K +D D + + +P +V GGEP ++K E++ + Sbjct: 112 GKNSKTY----MDLYDIDDHYDYTQLDFSIPKGVETVVLYGGEPFMDKRTVEVLTEVMEE 167 Query: 5139 NGMRVNLITNGTLITTKKAKE---LARAGLASAQVSIESPYASEHDSITGVPGSHEASIS 4969 V ++TNGT++ T AK+ + + +I E + H+ ++ Sbjct: 168 TNAEVYILTNGTVLHTPLAKKILAICKKYKHRLVFTISCDGGKERNEYIRQNIDHDLMLA 227 Query: 4968 GFKALKAAGVAVHPHFTICRLNQKSAVEYPEFCKEIGSDRFSANLIIPAGR-GDDAELTI 4792 LK V H T+ R++ + ++ + ++ A + + G E++I Sbjct: 228 NVPLLKEHSKHVCMHHTLSRMSYDTIYDFIQVAEK-------AQVFVDFGTVKAPREMSI 280 Query: 4791 RYRDIGKIVEDIRKKALE--AGVKFMWY 4714 ++ D KI++ KK E G+K +Y Sbjct: 281 KFMD-PKIIKAAMKKQYEQMKGMKEGYY 307 >ref|NP_899507.1|moaA Length = 374 Score = 37.7 bits (86), Expect = 0.016 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 8/108 (7%) Frame = -2 Query: 5334 CNIKCRFCYAGCTKVKK---NRELDKEGFKKVLDIIRYEAE-VPSVSFTGGEPLLNKNLP 5167 CN CR+CY+ + +K N E F + I ++ + S++ GGE + N P Sbjct: 104 CNQACRYCYSKLSDLKARLFNEEDSSTRFNDLSTTINTISKGLSSLTILGGEITRSSNAP 163 Query: 5166 ELIKYASKANGMRVNLITNGTLIT----TKKAKELARAGLASAQVSIE 5035 E+++ VN+ TNG+ + + K L A ++ VSI+ Sbjct: 164 EVLRNVGDIKA-AVNIFTNGSSLVLADGSDLIKSLKEANASTVFVSID 210 >ref|NP_899506.1|moaA Length = 329 Score = 33.9 bits (76), Expect = 0.23 Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 2/97 (2%) Frame = -2 Query: 5352 VALTYACNIKCRFCYAGCTKVKKNRELD-KEGF-KKVLDIIRYEAEVPSVSFTGGEPLLN 5179 +A + C C C + + + D K G + D+I Y E +V+ +GG P+++ Sbjct: 87 IARSNKCEYACEMCSSSISHSYDKKYNDGKLGIIENDFDVIPYLHETQAVAISGGNPVID 146 Query: 5178 KNLPELIKYASKANGMRVNLITNGTLITTKKAKELAR 5068 K + E+++ R + +NGT+ + + R Sbjct: 147 KKVAEILENLDPDVVERFIITSNGTVFPDRFLNAIKR 183 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,143,067 Number of Sequences: 14420 Number of extensions: 815786 Number of successful extensions: 2203 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 1904 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2202 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3343023979 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig149 (2580 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061653.1|transposase 116 1e-26 ref|NP_040341.1|putative transposase 47 1e-05 >ref|NP_061653.1|transposase Length = 328 Score = 116 bits (291), Expect = 1e-26 Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 1/167 (0%) Frame = -1 Query: 2505 PEEVQSRQTFGHWEIDTVTGKKSNDS-VILTLTERKTRYELLFLLDAKDSNTVNEALSEL 2329 P+E++ R TFGHWE DT+ + I T ERK+RY L+ + SN++ A++ L Sbjct: 164 PKEIKKRNTFGHWEADTIVSSRGKSKGCIATFAERKSRYYYCVLMPDRSSNSMETAINNL 223 Query: 2328 KNCYGKDVSNVFRTITADNGSEFSRLSEMLQGLGIEAYFTHPYSSWERGTNERHNGLIRR 2149 K +TIT D G EFS + I YF PYS+W+RGTNE NGL+R Sbjct: 224 IKHLPK---GAVKTITVDRGKEFSCYQNIENQFNINVYFADPYSAWQRGTNENTNGLLRE 280 Query: 2148 FIPKGKAIKDFSEETIKRIQQWLNSLPRRILGYKTPEECFNEEIHNL 2008 F PK + ++E + +N PR+ L +K P E +E+ +L Sbjct: 281 FFPKKTDLAKVNQEQLNYALDSINYRPRKCLNWKFPYEVLCDELLHL 327 >ref|NP_040341.1|putative transposase Length = 322 Score = 47.0 bits (110), Expect = 1e-05 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 1/154 (0%) Frame = -1 Query: 2475 GHWEIDTVTGKKSNDSVILTLTERKTRYELLFLLDAKDSNTVNEALSELKNCYGKD-VSN 2299 G E+DTV GK ++++ + + +Y + L +++T E + K+ K+ + Sbjct: 173 GWLEMDTVVGKDHKSAILVLVEQLSKKYFAIKL----ENHTAREVEKKFKDIIIKNNLIG 228 Query: 2298 VFRTITADNGSEFSRLSEMLQGLGIEAYFTHPYSSWERGTNERHNGLIRRFIPKGKAIKD 2119 + I D EFS+ EM + YF S ++ E N +R + PKG Sbjct: 229 KIKGIITDRRKEFSKWREMEIFAETQVYFCDAGSPQQKPLIEYMNSELRHWFPKGTDFNK 288 Query: 2118 FSEETIKRIQQWLNSLPRRILGYKTPEECFNEEI 2017 S++ I + +N R L + + +E F + I Sbjct: 289 VSQKQIDWVVNVINDKLRPCLNWISSKEMFLQNI 322 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,041,147 Number of Sequences: 14420 Number of extensions: 233654 Number of successful extensions: 677 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 635 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 675 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1247612583 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig150 (4774 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958593.1|putative putative minor tail protein 32 0.48 >ref|NP_958593.1|putative putative minor tail protein Length = 2021 Score = 32.3 bits (72), Expect = 0.48 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 10/113 (8%) Frame = +2 Query: 2705 RKDVEKLLKHIN*KYGKILLRGDNMSSKYYLRMKNHPYLVFLCIGSE---LRIH*QYHTS 2875 +K+V+ L+ HIN K + + +M + N L GS+ +R+ Q + Sbjct: 203 KKEVDSLVTHINEK----MEQARSMQRRIATLTANRDNLDMSKQGSKVKAMRLDDQIADA 258 Query: 2876 TTKIEYFHEKIREILGEEMNQEIE-------RLQQIIDQYDKEINRLNRKIKE 3013 K+E + + + L +EM+QE++ R+++ +DQ + +I R+ R I E Sbjct: 259 QIKMERYQTQAKA-LAQEMSQELDTVPNSLRRIEREMDQTEGKIERIRRSIAE 310 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,616,679 Number of Sequences: 14420 Number of extensions: 446059 Number of successful extensions: 1185 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1080 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1185 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2350416890 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig151 (6554 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_795618.1|hypothetical protein 47 3e-05 ref|NP_795448.1|hypothetical protein 47 3e-05 ref|NP_695090.1|hypothetical protein 46 6e-05 ref|NP_050001.1|putative replication protein 46 6e-05 ref|NP_049954.1|putative replication protein 46 6e-05 ref|NP_056711.1|gp271 46 6e-05 ref|NP_049423.1|Hypothetical protein 45 1e-04 ref|NP_818445.1|gp145 37 0.035 >ref|NP_795618.1|hypothetical protein Length = 267 Score = 47.0 bits (110), Expect = 3e-05 Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 19/160 (11%) Frame = +2 Query: 3515 GGRHYVFKYPRGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTL 3694 GGRH K P+G S+ F G D + V+ P + + Y+W HS + Sbjct: 96 GGRHIYLKKPKGVSMAQNIGFIDGVDLKAHVNNYVLVPPSNNAKGMYEWDMVHSPTSGEM 155 Query: 3695 AEAPEWLLKLMEREEVLLTPFEGRSIVAGIKEGS-------------------RNSTLTS 3817 EAP L+ ++ RE ++ S +G +GS RN+ L Sbjct: 156 TEAPLELINVL-RELKPAYEYDASSFTSGDYQGSNKTAKLFETIVLGFGDTGGRNNALAE 214 Query: 3818 LAGTMRARGMTEEGIYTALLAENNARCNPPLDEAEIKKIY 3937 G + R + E YT L N + PL + E ++ + Sbjct: 215 FVGGLLLRNVDVEIAYT-LAKMANHKTADPLSDKEFERTF 253 >ref|NP_795448.1|hypothetical protein Length = 267 Score = 47.0 bits (110), Expect = 3e-05 Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 19/160 (11%) Frame = +2 Query: 3515 GGRHYVFKYPRGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTL 3694 GGRH K P+G S+ F G D + V+ P + + Y+W HS + Sbjct: 96 GGRHIYLKKPKGVSMAQNIGFIDGVDLKAHVNNYVLVPPSNNAKGMYEWDMVHSPTSGEM 155 Query: 3695 AEAPEWLLKLMEREEVLLTPFEGRSIVAGIKEGS-------------------RNSTLTS 3817 EAP L+ ++ RE ++ S +G +GS RN+ L Sbjct: 156 TEAPLELINVL-RELKPAYEYDASSFTSGDYQGSNKTAKLFETIVLGFGDTGGRNNALAE 214 Query: 3818 LAGTMRARGMTEEGIYTALLAENNARCNPPLDEAEIKKIY 3937 G + R + E YT L N + PL + E ++ + Sbjct: 215 FVGGLLLRNVDVEIAYT-LAKMANHKTADPLSDKEFERTF 253 >ref|NP_695090.1|hypothetical protein Length = 269 Score = 45.8 bits (107), Expect = 6e-05 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 19/160 (11%) Frame = +2 Query: 3515 GGRHYVFKYPRGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTL 3694 GGRH K I G D + ++ P + S Y+W HS D ++ Sbjct: 96 GGRHIYLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSI 155 Query: 3695 AEAPEWLLKLMEREEVLLTPFE-----------------GRSIVAGI-KEGSRNSTLTSL 3820 EAP L+K++++ + +E SI+ G +G RN+ L Sbjct: 156 TEAPLALIKVLQKMKPEPLSYEVSSFASDCVRSTKTTKLFESILLGFGDKGGRNNALAEF 215 Query: 3821 AGTMRARGMTEEGIY-TALLAENNARCNPPLDEAEIKKIY 3937 G + RG+ E Y A +A NN + PL + E ++ + Sbjct: 216 VGGLLLRGVDPEITYHLAKMANNNTQ--EPLGDKEFERTF 253 >ref|NP_050001.1|putative replication protein Length = 271 Score = 45.8 bits (107), Expect = 6e-05 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 19/160 (11%) Frame = +2 Query: 3515 GGRHYVFKYPRGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTL 3694 GGRH K I G D + ++ P + S Y+W HS D ++ Sbjct: 98 GGRHIYLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSI 157 Query: 3695 AEAPEWLLKLMEREEVLLTPFE-----------------GRSIVAGI-KEGSRNSTLTSL 3820 EAP L+K++++ + +E SI+ G +G RN+ L Sbjct: 158 TEAPLALIKVLQKMKPEPLSYEVSSFASDCVRSTKTTKLFESILLGFGDKGGRNNALAEF 217 Query: 3821 AGTMRARGMTEEGIY-TALLAENNARCNPPLDEAEIKKIY 3937 G + RG+ E Y A +A NN + PL + E ++ + Sbjct: 218 VGGLLLRGVDPEITYHLAKMANNNTQ--EPLGDKEFERTF 255 >ref|NP_049954.1|putative replication protein Length = 271 Score = 45.8 bits (107), Expect = 6e-05 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 19/160 (11%) Frame = +2 Query: 3515 GGRHYVFKYPRGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTL 3694 GGRH K I G D + ++ P + S Y+W HS D ++ Sbjct: 98 GGRHIYLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSI 157 Query: 3695 AEAPEWLLKLMEREEVLLTPFE-----------------GRSIVAGI-KEGSRNSTLTSL 3820 EAP L+K++++ + +E SI+ G +G RN+ L Sbjct: 158 TEAPLALIKVLQKMKPEPLSYEVSSFASDCVRSTKTTKLFESILLGFGDKGGRNNALAEF 217 Query: 3821 AGTMRARGMTEEGIY-TALLAENNARCNPPLDEAEIKKIY 3937 G + RG+ E Y A +A NN + PL + E ++ + Sbjct: 218 VGGLLLRGVDPEITYHLAKMANNNTQ--EPLGDKEFERTF 255 >ref|NP_056711.1|gp271 Length = 271 Score = 45.8 bits (107), Expect = 6e-05 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 19/160 (11%) Frame = +2 Query: 3515 GGRHYVFKYPRGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTL 3694 GGRH K I G D + ++ P + S Y+W HS D ++ Sbjct: 98 GGRHIYLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSI 157 Query: 3695 AEAPEWLLKLMEREEVLLTPFE-----------------GRSIVAGI-KEGSRNSTLTSL 3820 EAP L+K++++ + +E SI+ G +G RN+ L Sbjct: 158 TEAPLALIKVLQKMKPEPLSYEVSSFASDCVRSTKTTKLFESILLGFGDKGGRNNALAEF 217 Query: 3821 AGTMRARGMTEEGIY-TALLAENNARCNPPLDEAEIKKIY 3937 G + RG+ E Y A +A NN + PL + E ++ + Sbjct: 218 VGGLLLRGVDPEITYHLAKMANNNTQ--EPLGDKEFERTF 255 >ref|NP_049423.1|Hypothetical protein Length = 271 Score = 44.7 bits (104), Expect = 1e-04 Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 19/160 (11%) Frame = +2 Query: 3515 GGRHYVFKYPRGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTL 3694 GGRH K I G D + ++ P + S Y+W HS D ++ Sbjct: 98 GGRHIYLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSI 157 Query: 3695 AEAPEWLLKLMEREEVLLTPFE-----------------GRSIVAGI-KEGSRNSTLTSL 3820 EAP L+K++++ + +E SI+ G +G RN+ L Sbjct: 158 TEAPLALIKVLQKMKPEPLNYEVSSFASDSVRSTKTTKLFESILLGFGDKGGRNNALAEF 217 Query: 3821 AGTMRARGMTEEGIY-TALLAENNARCNPPLDEAEIKKIY 3937 G + RG+ E Y A +A NN + PL E ++ + Sbjct: 218 VGGLLLRGVDPEITYHLAKMANNNTQ--EPLGNKEFERTF 255 >ref|NP_818445.1|gp145 Length = 219 Score = 36.6 bits (83), Expect = 0.035 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +2 Query: 3539 YPRGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWL 3664 Y G N+ PG D STGG +V PS+ V+ QY W+ Sbjct: 167 YVAGTDDGNRAGVRPGIDYRSTGGFVVAVPSV-VNGKQYSWV 207 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,265,909 Number of Sequences: 14420 Number of extensions: 628140 Number of successful extensions: 1905 Number of sequences better than 0.5: 8 Number of HSP's better than 0.5 without gapping: 1536 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1900 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 3224228922 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig152 (7141 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164749.1|orf114 35 0.14 >ref|YP_164749.1|orf114 Length = 320 Score = 34.7 bits (78), Expect = 0.14 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = +1 Query: 6751 FCCKFCQSIFNYFVLHSGFSKFVSKFCVLLNGKTSVIGKYY 6873 F C +C+S +N+ V F L +GK SVIGKY+ Sbjct: 119 FLCDYCRSEYNHLVQMKTADDFKQSILDLHSGKLSVIGKYF 159 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,316,320 Number of Sequences: 14420 Number of extensions: 741068 Number of successful extensions: 2187 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1897 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2185 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3491841476 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig153 (4069 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_899518.1|heme biosynthesis domain protein 42 5e-04 ref|NP_899507.1|moaA 42 5e-04 ref|YP_025041.1|putative transposase B 36 0.028 ref|NP_620626.1|putative transposase 36 0.037 ref|NP_958229.1|gene 55 protein 36 0.037 ref|NP_536395.1|ISBt3 transposase subunit protein 35 0.082 >ref|NP_899518.1|heme biosynthesis domain protein Length = 350 Score = 42.0 bits (97), Expect = 5e-04 Identities = 40/185 (21%), Positives = 82/185 (44%), Gaps = 5/185 (2%) Frame = -1 Query: 1423 EFQSSIGAPLYVVLNITNKCNLRCLHCFNDSPTSTKSACKELEDDQIIKIVKELGEMKVA 1244 E+++ P + + ++NKCNL C C+ + + T +++D + V Sbjct: 84 EYEALEEHPRTIQILMSNKCNLACRMCYGKN-SKTYMDLYDIDDHYDYTQLDFSIPKGVE 142 Query: 1243 NVCFSGGEPLVRKQVLFNCLMLLGQRNVRTSIVTNGTLIDEQTAEMLNVLGVK-----EV 1079 V GGEP + K+ + ++ + N I+TNGT++ A+ + + K Sbjct: 143 TVVLYGGEPFMDKRTVEVLTEVMEETNAEVYILTNGTVLHTPLAKKILAICKKYKHRLVF 202 Query: 1078 QVSLDGCNEDTHEKLRQVKGCFNLALKGIRNLCYAGVTTSVSYTLNKWNVNDVEPIIEKL 899 +S DG ++ +E +RQ +L L + L + +TL++ + + + I+ Sbjct: 203 TISCDG-GKERNEYIRQ-NIDHDLMLANVPLLKEHSKHVCMHHTLSRMSYDTIYDFIQVA 260 Query: 898 EDMQI 884 E Q+ Sbjct: 261 EKAQV 265 Score = 41.2 bits (95), Expect = 9e-04 Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 12/130 (9%) Frame = -2 Query: 3369 EKLKNCLDNGE-------HYNSILKGPYQLTVDITNRCNLRCLHCYNFSGEN-----NIC 3226 E K C+ GE Y ++ + P + + ++N+CNL C CY + + +I Sbjct: 66 EYCKECMSYGELSDQKYFEYEALEEHPRTIQILMSNKCNLACRMCYGKNSKTYMDLYDID 125 Query: 3225 TEGEMTDSELVALVKDIASIKPLNVCFCGGEPLLRKDILLKCIKILNDEDIQVSFVTNGL 3046 + T + ++ K + + V GGEP + K + +++ + + +V +TNG Sbjct: 126 DHYDYTQLDF-SIPKGVET-----VVLYGGEPFMDKRTVEVLTEVMEETNAEVYILTNGT 179 Query: 3045 LLTPEVSKQL 3016 +L ++K++ Sbjct: 180 VLHTPLAKKI 189 >ref|NP_899507.1|moaA Length = 374 Score = 42.0 bits (97), Expect = 5e-04 Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 21/182 (11%) Frame = -2 Query: 3303 LTVDITNRCNLRCLHCYN--------FSGENNICTEGEMTDSELVALVKDIASIKPLNVC 3148 L V +N CN C +CY+ E + T + + + K ++S+ L Sbjct: 96 LQVFPSNECNQACRYCYSKLSDLKARLFNEEDSSTRFNDLSTTINTISKGLSSLTIL--- 152 Query: 3147 FCGGEPLLRKDILLKCIKILNDEDIQVSFVTNGLLLT----PEVSKQLKEAGLSRAQISI 2980 GGE + R + ++ + D V+ TNG L ++ K LKEA S +SI Sbjct: 153 --GGE-ITRSSNAPEVLRNVGDIKAAVNIFTNGSSLVLADGSDLIKSLKEANASTVFVSI 209 Query: 2979 DGIGKSHDRLRRHEGAFEKAAEALQNLKDVKIETGVAFTPTSWN---------TEEFDQI 2827 DG+ + D +R F + N++ +K V T T N +FD + Sbjct: 210 DGLREYQDYIR----LFADIKKVKSNIEVIKQHFDVVITATVSNVTLEHLETLVSDFDSL 265 Query: 2826 VD 2821 D Sbjct: 266 YD 267 >ref|YP_025041.1|putative transposase B Length = 280 Score = 36.2 bits (82), Expect = 0.028 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Frame = -1 Query: 3817 KLRYQISMDGKGRALDNQRIERFFRSYKWEKLY-LEECETVQQLRQITKEYVE-HYNHRR 3644 +L + S KG DN +E F S K E +Y + E + + EYV YN +R Sbjct: 197 ELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAFYNRKR 256 Query: 3643 PHQSLDYKTPAE 3608 H SL Y+TP + Sbjct: 257 IHSSLGYQTPLQ 268 Score = 35.4 bits (80), Expect = 0.048 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Frame = +2 Query: 8 SMDGKGRALDNQRIERFFRSYKWEKLY-LEECETVQQLRQITKEYVE-HYNHRRPHQSLD 181 S KG DN +E F S K E +Y + E + + EYV YN +R H SL Sbjct: 203 SYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAFYNRKRIHSSLG 262 Query: 182 YKTPAE 199 Y+TP + Sbjct: 263 YQTPLQ 268 >ref|NP_620626.1|putative transposase Length = 362 Score = 35.8 bits (81), Expect = 0.037 Identities = 17/55 (30%), Positives = 30/55 (54%) Frame = +2 Query: 38 NQRIERFFRSYKWEKLYLEECETVQQLRQITKEYVEHYNHRRPHQSLDYKTPAEY 202 N +IERF ++Y ++ E+ L+ +Y YN R H+SL+++TP + Sbjct: 300 NGKIERFHQNYTKLFVFEEKILNAVSLQNKLNDYYYFYNFERVHKSLNFQTPFNF 354 Score = 35.8 bits (81), Expect = 0.037 Identities = 17/55 (30%), Positives = 30/55 (54%) Frame = -1 Query: 3769 NQRIERFFRSYKWEKLYLEECETVQQLRQITKEYVEHYNHRRPHQSLDYKTPAEY 3605 N +IERF ++Y ++ E+ L+ +Y YN R H+SL+++TP + Sbjct: 300 NGKIERFHQNYTKLFVFEEKILNAVSLQNKLNDYYYFYNFERVHKSLNFQTPFNF 354 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 35.8 bits (81), Expect = 0.037 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Frame = -1 Query: 3811 RYQI--SMDGKGRALDNQRIERFFRSYKWEKL----YLEECETVQQLRQITKEYVEHYNH 3650 RYQI SM +G DN +ERFFRS K E + Y+ E IT V +Y+ Sbjct: 220 RYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAA---HAITDYIVGYYSA 276 Query: 3649 RRPHQ 3635 RPH+ Sbjct: 277 LRPHE 281 Score = 32.7 bits (73), Expect = 0.31 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = +2 Query: 8 SMDGKGRALDNQRIERFFRSYKWEKL----YLEECETVQQLRQITKEYVEHYNHRRPHQ 172 SM +G DN +ERFFRS K E + Y+ E IT V +Y+ RPH+ Sbjct: 226 SMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAA---HAITDYIVGYYSALRPHE 281 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 34.7 bits (78), Expect = 0.082 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Frame = +2 Query: 8 SMDGKGRALDNQRIERFFRSYKWEKLYLEE-CETVQQLRQITKEYVEHYNHRRPHQSLDY 184 S+ +G + DN E YK E ++ +T + + T E+V YNH R + L Y Sbjct: 201 SVGSRGDSYDNALAETINGLYKTELIHRRAPWKTRESVELATLEWVAWYNHHRLMEPLGY 260 Query: 185 KTPAEYYFGGYDQL 226 PAE Y QL Sbjct: 261 IPPAEAEANYYRQL 274 Score = 34.7 bits (78), Expect = 0.082 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Frame = -1 Query: 3799 SMDGKGRALDNQRIERFFRSYKWEKLYLEE-CETVQQLRQITKEYVEHYNHRRPHQSLDY 3623 S+ +G + DN E YK E ++ +T + + T E+V YNH R + L Y Sbjct: 201 SVGSRGDSYDNALAETINGLYKTELIHRRAPWKTRESVELATLEWVAWYNHHRLMEPLGY 260 Query: 3622 KTPAEYYFGGYDQL 3581 PAE Y QL Sbjct: 261 IPPAEAEANYYRQL 274 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,632,432 Number of Sequences: 14420 Number of extensions: 395416 Number of successful extensions: 1128 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 910 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1123 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1999402536 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig154 (5267 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,339,777 Number of Sequences: 14420 Number of extensions: 569386 Number of successful extensions: 1330 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1185 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1330 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2585269814 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig155 (5184 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061653.1|transposase 92 7e-19 ref|NP_040341.1|putative transposase 37 0.021 >ref|NP_061653.1|transposase Length = 328 Score = 91.7 bits (226), Expect = 7e-19 Identities = 50/139 (35%), Positives = 72/139 (51%) Frame = -2 Query: 5183 ILTLTERKTRYELLFLLDAKDSNTVNEALSELKNCYGKDVSNVFRTITADNGSEFSRLSE 5004 I T ERK+RY L+ + SN++ A++ L K +TIT D G EFS Sbjct: 192 IATFAERKSRYYYCVLMPDRSSNSMETAINNLIKHLPK---GAVKTITVDRGKEFSCYQN 248 Query: 5003 MLQGLGIEAYFTHPYSSWERGTNERHNGLIRRFIPKGKAIKDFSEETIKRIQQWLNSLPR 4824 + I YF PYS+W+RGTNE NGL+R F PK + ++E + +N PR Sbjct: 249 IENQFNINVYFADPYSAWQRGTNENTNGLLREFFPKKTDLAKVNQEQLNYALDSINYRPR 308 Query: 4823 RILGYKTPEECFNEEIHNL 4767 + L +K P E +E+ +L Sbjct: 309 KCLNWKFPYEVLCDELLHL 327 >ref|NP_040341.1|putative transposase Length = 322 Score = 37.0 bits (84), Expect = 0.021 Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 3/139 (2%) Frame = -2 Query: 5183 ILTLTERKTRYELLFLLDAKDSNTVNEALSEL---KNCYGKDVSNVFRTITADNGSEFSR 5013 IL L E+ ++ L+ + V + ++ N GK + I D EFS+ Sbjct: 189 ILVLVEQLSKKYFAIKLENHTAREVEKKFKDIIIKNNLIGK-----IKGIITDRRKEFSK 243 Query: 5012 LSEMLQGLGIEAYFTHPYSSWERGTNERHNGLIRRFIPKGKAIKDFSEETIKRIQQWLNS 4833 EM + YF S ++ E N +R + PKG S++ I + +N Sbjct: 244 WREMEIFAETQVYFCDAGSPQQKPLIEYMNSELRHWFPKGTDFNKVSQKQIDWVVNVIND 303 Query: 4832 LPRRILGYKTPEECFNEEI 4776 R L + + +E F + I Sbjct: 304 KLRPCLNWISSKEMFLQNI 322 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,165,231 Number of Sequences: 14420 Number of extensions: 581564 Number of successful extensions: 1614 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1435 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1612 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2541504666 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig156 (4958 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061653.1|transposase 65 5e-11 ref|NP_690649.1|morphogenesis protein 50 3e-06 ref|NP_040733.1|morphogenesis protein B 47 3e-05 ref|NP_040341.1|putative transposase 40 0.002 ref|NP_073698.1|peptidoglycan hydrolase 40 0.002 ref|NP_108734.1|lysin 39 0.005 ref|NP_663692.1|putative lysin 38 0.009 ref|NP_112716.1|LYS 38 0.009 ref|NP_996722.1|lysin 38 0.009 ref|YP_164756.1|orf121 38 0.012 ref|YP_025045.1|putative lysin protein 37 0.015 ref|YP_164723.1|orf88 37 0.026 ref|NP_690779.1|ORF46 35 0.058 >ref|NP_061653.1|transposase Length = 328 Score = 65.5 bits (158), Expect = 5e-11 Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 1/135 (0%) Frame = +2 Query: 4487 FKHLSVYERGQIAALLKEGKSQRYIANKLGRSPSTISREIKRGTTMQMRTDLSTYKVYFP 4666 + HL++ ER +I L +E S R IA KL RS STISREI R Q Y Sbjct: 16 YNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISRNNLNQS---------YQA 66 Query: 4667 ETGQAVYEKNRMNCGAKRKLA-QVEDFLKFAEDKILREKWSPDAVVGLCRRDPKWQNSTI 4843 ET Q YE R CG + ++ + +K+ L+ WSP+ +VG ++ Sbjct: 67 ETAQKNYETKRKLCGRPTRFTPELGNIIKY----YLKCHWSPEQIVGRLLQNQ------- 115 Query: 4844 VCTKTLYNYIDLGLI 4888 +C KT+Y +I+ +I Sbjct: 116 ICFKTIYRWINSNMI 130 >ref|NP_690649.1|morphogenesis protein Length = 263 Score = 49.7 bits (117), Expect = 3e-06 Identities = 22/49 (44%), Positives = 32/49 (65%) Frame = -2 Query: 1885 AQTQVYTVKPGDTMWKIAVKYQIGISEIIAANPQIKNPNLIYPGQKINI 1739 ++T + VK GDT+ +IA K + ++ NP IKNPN IY GQ+IN+ Sbjct: 160 SKTNTHVVKKGDTLSEIAKKIKTSTKTLLELNPTIKNPNKIYVGQRINV 208 Score = 42.0 bits (97), Expect = 6e-04 Identities = 20/47 (42%), Positives = 29/47 (61%) Frame = -2 Query: 1879 TQVYTVKPGDTMWKIAVKYQIGISEIIAANPQIKNPNLIYPGQKINI 1739 T Y +K G+T+ IA K + +S+++ NP IKN N IY GQ I + Sbjct: 216 TLKYKIKRGETLTGIAKKNKTTVSQLMKLNPNIKNANNIYAGQTIRL 262 >ref|NP_040733.1|morphogenesis protein B Length = 258 Score = 46.6 bits (109), Expect = 3e-05 Identities = 21/47 (44%), Positives = 30/47 (63%) Frame = -2 Query: 1879 TQVYTVKPGDTMWKIAVKYQIGISEIIAANPQIKNPNLIYPGQKINI 1739 T Y VK GD + KIA K+ ++ ++ NP IK+PN+I GQ IN+ Sbjct: 160 TPKYKVKSGDNLTKIAKKHNTTVATLLKLNPSIKDPNMIRVGQTINV 206 Score = 42.4 bits (98), Expect = 5e-04 Identities = 20/46 (43%), Positives = 30/46 (65%) Frame = -2 Query: 1876 QVYTVKPGDTMWKIAVKYQIGISEIIAANPQIKNPNLIYPGQKINI 1739 + + VK GDT+ KIAV + +S +++ NP+I NPN I GQ I + Sbjct: 212 KTHKVKSGDTLSKIAVDNKTTVSRLMSLNPEITNPNHIKVGQTIRL 257 >ref|NP_040341.1|putative transposase Length = 322 Score = 40.0 bits (92), Expect = 0.002 Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 8/140 (5%) Frame = +2 Query: 4487 FKHLSVYERGQIAALL-------KEGKSQ-RYIANKLGRSPSTISREIKRGTTMQMRTDL 4642 + HLS ++ ++ LL K G+ IA L R STI REIKR T+ + Sbjct: 2 YSHLSFMDKVKLEQLLLSKIFLKKNGEQNISAIAKYLNRHRSTILREIKRFKTID---EY 58 Query: 4643 STYKVYFPETGQAVYEKNRMNCGAKRKLAQVEDFLKFAEDKILREKWSPDAVVGLCRRDP 4822 S YK + + YEK + N ++ E+ L F + SP ++ R Sbjct: 59 SAYK-----SDKMYYEKRKKN---NKRFKFTEEQLNFIHLRFNVYHDSPSELI--YRYFL 108 Query: 4823 KWQNSTIVCTKTLYNYIDLG 4882 K++ VC KTLY +I LG Sbjct: 109 KFKVKFPVCVKTLYKWIRLG 128 >ref|NP_073698.1|peptidoglycan hydrolase Length = 239 Score = 40.0 bits (92), Expect = 0.002 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Frame = -2 Query: 1870 YTVKPGDTMWKIA--VKYQIGISEIIAANPQIKNPNLIYPGQKINIP 1736 Y +K GDT+W IA K++ + I AN +K ++IY G+ I IP Sbjct: 191 YKIKKGDTLWSIAHDPKHKTTVDAIYKANAGLKKKDVIYAGETIKIP 237 >ref|NP_108734.1|lysin Length = 428 Score = 38.9 bits (89), Expect = 0.005 Identities = 19/48 (39%), Positives = 28/48 (58%) Frame = -2 Query: 1885 AQTQVYTVKPGDTMWKIAVKYQIGISEIIAANPQIKNPNLIYPGQKIN 1742 A + YTV+ GD + IA+ + +++ N I NPNLIY GQ +N Sbjct: 381 ATARAYTVQSGDNLSSIAILLGTTVQSLVSMNG-ISNPNLIYAGQTLN 427 Score = 33.9 bits (76), Expect = 0.17 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = -2 Query: 1870 YTVKPGDTMWKIAVKYQIGISEIIAANPQIKNPNLIYPGQKIN 1742 Y VK GDT+ IA + E+ N + NPN+IY GQ I+ Sbjct: 332 YVVKQGDTLSGIASNWGTNWQELARQN-SLSNPNMIYAGQVIS 373 >ref|NP_663692.1|putative lysin Length = 429 Score = 38.1 bits (87), Expect = 0.009 Identities = 19/48 (39%), Positives = 27/48 (56%) Frame = -2 Query: 1885 AQTQVYTVKPGDTMWKIAVKYQIGISEIIAANPQIKNPNLIYPGQKIN 1742 A + YTV GD + IA + + +++ N I NPNLIY GQ +N Sbjct: 382 ATARTYTVSSGDNLSSIASRLGTTVQSLVSMNG-ISNPNLIYAGQTLN 428 >ref|NP_112716.1|LYS Length = 429 Score = 38.1 bits (87), Expect = 0.009 Identities = 19/48 (39%), Positives = 27/48 (56%) Frame = -2 Query: 1885 AQTQVYTVKPGDTMWKIAVKYQIGISEIIAANPQIKNPNLIYPGQKIN 1742 A + YTV GD + IA + + +++ N I NPNLIY GQ +N Sbjct: 382 ATARTYTVSSGDNLSSIASRLGTTVQSLVSMNG-ISNPNLIYAGQTLN 428 Score = 32.7 bits (73), Expect = 0.38 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = -2 Query: 1870 YTVKPGDTMWKIAVKYQIGISEIIAANPQIKNPNLIYPGQKI 1745 Y VK GDT+ IA + E+ N + NPN+IY GQ I Sbjct: 333 YIVKQGDTLSGIASNWGTNWQELARQN-SLSNPNVIYTGQVI 373 >ref|NP_996722.1|lysin Length = 429 Score = 38.1 bits (87), Expect = 0.009 Identities = 19/48 (39%), Positives = 28/48 (58%) Frame = -2 Query: 1885 AQTQVYTVKPGDTMWKIAVKYQIGISEIIAANPQIKNPNLIYPGQKIN 1742 A + YTV+ GD + IA + + +++ N I NPNLIY GQ +N Sbjct: 382 ATARTYTVQSGDNLSSIARRLGTTVQSLVSMNG-ISNPNLIYAGQTLN 428 Score = 33.1 bits (74), Expect = 0.29 Identities = 18/44 (40%), Positives = 24/44 (54%) Frame = -2 Query: 1870 YTVKPGDTMWKIAVKYQIGISEIIAANPQIKNPNLIYPGQKINI 1739 Y VK GDT+ IA E+ N + NPN+IY GQ I++ Sbjct: 333 YIVKQGDTLSGIASNLGTNWQELARQN-SLSNPNMIYSGQVISL 375 >ref|YP_164756.1|orf121 Length = 193 Score = 37.7 bits (86), Expect = 0.012 Identities = 19/55 (34%), Positives = 33/55 (60%) Frame = -2 Query: 1864 VKPGDTMWKIAVKYQIGISEIIAANPQIKNPNLIYPGQKINIPNIDDIKAQENEV 1700 V GDT+ ++A KY S+ IA++ + NPNLI+ G K+ + ++ + Q +V Sbjct: 3 VNQGDTLSELASKYGT-TSDKIASDNNLSNPNLIFVGDKLEVGSVKEENTQPTKV 56 >ref|YP_025045.1|putative lysin protein Length = 393 Score = 37.4 bits (85), Expect = 0.015 Identities = 20/44 (45%), Positives = 27/44 (61%) Frame = -2 Query: 1870 YTVKPGDTMWKIAVKYQIGISEIIAANPQIKNPNLIYPGQKINI 1739 YTV+ GD+ W IA KY I + +AAN +LIYPG+ + I Sbjct: 350 YTVRSGDSFWNIASKYGISM-YTLAANNGKSIYSLIYPGESLYI 392 >ref|YP_164723.1|orf88 Length = 464 Score = 36.6 bits (83), Expect = 0.026 Identities = 19/44 (43%), Positives = 26/44 (59%) Frame = -2 Query: 1870 YTVKPGDTMWKIAVKYQIGISEIIAANPQIKNPNLIYPGQKINI 1739 YTVK GD+ WKIA + IS + + N + + IYPGQ + I Sbjct: 421 YTVKSGDSFWKIANDHGTTISNLTSLN-GLSMYSTIYPGQSLRI 463 >ref|NP_690779.1|ORF46 Length = 300 Score = 35.4 bits (80), Expect = 0.058 Identities = 20/44 (45%), Positives = 29/44 (65%) Frame = -2 Query: 1870 YTVKPGDTMWKIAVKYQIGISEIIAANPQIKNPNLIYPGQKINI 1739 YTVK GDT+ +IAVK + ++++ A N IKN N I GQ + + Sbjct: 170 YTVKKGDTLSEIAVKTGVSMAKLQAYN-GIKNANKITVGQVLKL 212 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,534,953 Number of Sequences: 14420 Number of extensions: 530720 Number of successful extensions: 1353 Number of sequences better than 0.5: 13 Number of HSP's better than 0.5 without gapping: 1197 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1348 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2424276591 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig157 (4514 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,032,229 Number of Sequences: 14420 Number of extensions: 455960 Number of successful extensions: 1345 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1209 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1345 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2214755244 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig158 (3730 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 152 3e-37 ref|NP_835517.1|integrase 48 7e-06 ref|NP_803356.1|integrase 48 7e-06 ref|NP_040813.1|integrase 47 1e-05 ref|NP_795396.1|site-specific recombinase 47 1e-05 ref|NP_061531.1|integrase 43 3e-04 ref|NP_076801.1|integrase 43 3e-04 ref|NP_075464.1|integrase 42 4e-04 ref|NP_058467.1|integrase 42 4e-04 ref|NP_076696.1|integrase 42 4e-04 ref|NP_862871.1|gp32 42 5e-04 ref|NP_510895.1|similar to phage phi 11 integrase 42 6e-04 ref|NP_511007.1|integrase 41 8e-04 ref|NP_803307.1|integrase 41 0.001 ref|NP_150133.1|integrase 39 0.003 ref|NP_061591.2|integrase 39 0.005 ref|NP_059584.1|Int 39 0.005 ref|NP_852561.1|DNA integration 38 0.007 ref|NP_720278.1|Int 38 0.009 ref|NP_803254.1|integrase 37 0.012 ref|NP_116524.1|integrase 37 0.015 ref|YP_006360.1|Int 37 0.020 ref|NP_996675.1|integrase 37 0.020 ref|NP_076573.1|integrase 37 0.020 ref|NP_862840.1|gp1 36 0.026 ref|NP_108680.1|integrase 36 0.026 ref|NP_695029.1|Integrase 36 0.026 ref|NP_624303.1|integrase fragment 36 0.026 ref|YP_164382.1|integrase 36 0.034 ref|NP_818023.1|gp50 35 0.044 ref|NP_680502.1|integrase 35 0.044 ref|NP_777346.1|hypothetical protein 35 0.044 ref|YP_077249.1|Hypothetical protein 35 0.076 ref|YP_006956.1|putative recombination endonuclease, subunit D13 35 0.076 ref|NP_663635.1|putative integrase 34 0.099 ref|NP_612851.1|putative integrase 34 0.099 ref|NP_076635.1|integrase 34 0.099 ref|YP_025040.1|putative transposase A 33 0.17 ref|NP_958550.1|putative protein 33 0.22 ref|NP_945240.1|integrase 33 0.22 ref|NP_795373.1|putative integrase 33 0.29 ref|YP_195169.1|RecA-like recombination protein 33 0.29 >ref|NP_046572.1|ABC transporter Length = 705 Score = 152 bits (383), Expect = 3e-37 Identities = 129/543 (23%), Positives = 240/543 (44%), Gaps = 5/543 (0%) Frame = +2 Query: 875 YRNRIIAASVLSLVSMFFILL---NPLITRVLIDSVLTSRNFSVLNKVXXXXXXXXXVNS 1045 +RN++I +L L S+F + L + L+D ++ L + + Sbjct: 162 FRNKLIVFVIL-LTSLFVVGLAVAGSFYIKFLVDLIIPRSLRESLITITLIFISMVLIRC 220 Query: 1046 IVHFIYSYSLNRIFLSLGLDIKKKIFKHIVKLDLLVTKKMSVGEINFRIFNDSDLLKQSF 1225 I F+ SY + ++ + ++ F + KL + + GE+ R FND +K F Sbjct: 221 IFDFVRSYLIIKLSYKVDKEMSNVYFNKVTKLPINFFENREDGEVISR-FNDGIYIKDFF 279 Query: 1226 GQIMFGGXXXXXXXXXXXXXXXXXSSVMTIFVGVMNLIQVPIIIYFTKRIRAITYERKVV 1405 ++++ + + + L+ + I F ++ + Sbjct: 280 SANFVTAIIDIILILGLGVILYRTNNILFLTIILPILLLSCLAILFFDHLKKKNQKLMED 339 Query: 1406 TEATLNRTIEVISSFHLLKGCNNEKSEIDKFDKNNEKVLDKQIKEANLNLLFTEISSVIM 1585 + + I + + + N ++KF +K L+ A + + +I Sbjct: 340 KAKSTSLLINFLKNMTTVYSLNKTSFFLEKFHLTYDKQLNSTFSVAKAVISNEILKGLIQ 399 Query: 1586 SCIGFGSIWIGGNFVINGIITMGELISFLLXXXXXXXXXXXXXXXXTGLQDALSSTKRIS 1765 + +W+G V+N +++G L+ + LQ A ++ R Sbjct: 400 NSFTIIILWVGTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHVASIRFF 459 Query: 1766 DVMKLENSIIQ--SNDCIKVMHKIVDEITIKDLNFSYDDGKEVLKDINLTVKKNTICSII 1939 DV+ N +Q SN+ + + + I +LN D + +++DINL + + II Sbjct: 460 DVV---NYPVQQDSNENLTELD-FIQNIKTVNLNIGADPMRYIVEDINLILDRKDKVLII 515 Query: 1940 GRSGAGKTTLCLLIARFFDPSSGEILLDDVNIKDIDVDTYRKSVGIVLQNSFLFSGSIRE 2119 G SG GK+T +++ + I L+ ++I D + RK + + +N FLF G+I+E Sbjct: 516 GESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKE 575 Query: 2120 NILLGKSDATEEEIIEAAKLANAHEFISELEDGYWTQIGSKGRNLSGGQLQRIALARIFL 2299 N+ +G+ + EI A ++ HEFI L+ Y ++ G NLS GQ QR+ALAR L Sbjct: 576 NLCMGEI-FDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAIL 634 Query: 2300 QRPQIVILDEPTSFIDSESEELIQESINKLKEYSTIFVISHKLSTVKGSNKIVVLNNGRI 2479 +PQ++ILDE S ID ++ +LI E+++++ I +I+H + NK +V N RI Sbjct: 635 HQPQVLILDESLSNIDPDNTKLIYETLHRMD--CLIILITHNDPSNFKYNKKLVFRNNRI 692 Query: 2480 EES 2488 ES Sbjct: 693 IES 695 >ref|NP_835517.1|integrase Length = 345 Score = 48.1 bits (113), Expect = 7e-06 Identities = 43/160 (26%), Positives = 62/160 (38%), Gaps = 3/160 (1%) Frame = +1 Query: 3247 KSLDEQTYRALRRHVYRGGNKAHIAMF-EIFTRCGVRNFELINIRLTDFDISDRKGTLKI 3423 K + Y L+ HV + ++ +A+F I T C V I I I+ K T+ I Sbjct: 163 KFISVTEYEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIE----HINQVKNTIFI 218 Query: 3424 VGKLNKV--RYIPLHKDVRDAINNWMEIRKNIKTEYDNLFISERKTPYTRSGIWKIFKKY 3597 + RYI + K I M++ YD E + I K Sbjct: 219 DERKTDTSPRYISIAKSDMKHI---MDVISTFAISYDGYIFKEAGSIINLQAINNALKSA 275 Query: 3598 CEQIGITDVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 C I +T H+ RH C LL GV I ++K GH + Sbjct: 276 CRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKN 315 >ref|NP_803356.1|integrase Length = 345 Score = 48.1 bits (113), Expect = 7e-06 Identities = 43/160 (26%), Positives = 62/160 (38%), Gaps = 3/160 (1%) Frame = +1 Query: 3247 KSLDEQTYRALRRHVYRGGNKAHIAMF-EIFTRCGVRNFELINIRLTDFDISDRKGTLKI 3423 K + Y L+ HV + ++ +A+F I T C V I I I+ K T+ I Sbjct: 163 KFISVTEYEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIE----HINQVKNTIFI 218 Query: 3424 VGKLNKV--RYIPLHKDVRDAINNWMEIRKNIKTEYDNLFISERKTPYTRSGIWKIFKKY 3597 + RYI + K I M++ YD E + I K Sbjct: 219 DERKTDTSPRYISIAKSDMKHI---MDVISTFAISYDGYIFKEAGSIINLQAINNALKSA 275 Query: 3598 CEQIGITDVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 C I +T H+ RH C LL GV I ++K GH + Sbjct: 276 CRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKN 315 >ref|NP_040813.1|integrase Length = 289 Score = 47.4 bits (111), Expect = 1e-05 Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 1/124 (0%) Frame = +1 Query: 3346 GVRNFELINIRLTDFDISDRKGTLKIVG-KLNKVRYIPLHKDVRDAINNWMEIRKNIKTE 3522 G+R E +NI+++D D ++ ++++ K K RY P I +E+ Sbjct: 142 GLRVSEALNIKISDMDFKNK--VIRVLSSKTRKQRYAPFSSFSLKYIKELIEVNPKRDYL 199 Query: 3523 YDNLFISERKTPYTRSGIWKIFKKYCEQIGITDVTIHSFRHYFCRTLLKNGVDISVVAKL 3702 + N FI +R+T ++ I +K+ + + + + H FR F L++NG++I + K+ Sbjct: 200 FYN-FIKDRQT--NKNDIKLFYKRLKKHLNLERIHTHRFRKTFASILIENGLNIDDLQKI 256 Query: 3703 AGHS 3714 HS Sbjct: 257 FDHS 260 >ref|NP_795396.1|site-specific recombinase Length = 191 Score = 47.0 bits (110), Expect = 1e-05 Identities = 36/151 (23%), Positives = 71/151 (47%), Gaps = 10/151 (6%) Frame = +1 Query: 3295 RGGNKAHIAMFEIFTRCGVRNFELINIRLTDFDISDRKGTLKIVGKLNKVRYIPLHKDVR 3474 +G N + + G+R +++ +++ D + ++ K K + P++K +R Sbjct: 21 KGWNPRNFLLLLFGLNTGLRIGDILPLKVKDVTAGNYIDIIE--QKTGKQKRFPINKTLR 78 Query: 3475 DAINNWMEIRKNIKTEYDNLFISERKT----------PYTRSGIWKIFKKYCEQIGITDV 3624 I+ +++ K +K +D LF S++K P +R WKI K +Q GI + Sbjct: 79 REIDKYIK-DKQLKP-WDYLFESQKKCTEPGKEGQKKPISREQAWKILNKAAKQFGIHHI 136 Query: 3625 TIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 HS R F + + DI+++ ++ HSS Sbjct: 137 GTHSMRKSFGYHMYQKTQDIAMLMEMFNHSS 167 >ref|NP_061531.1|integrase Length = 369 Score = 42.7 bits (99), Expect = 3e-04 Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 5/137 (3%) Frame = +1 Query: 3322 MFEIFTRC----GVRNFELINIRLTDFDISDRKGTLKIVG-KLNKVRYIPLHKDVRDAIN 3486 M E F R G R E++ + D ++R L+ K K R IP+++ A+ Sbjct: 183 MLEDFIRLAVNTGCRREEMLGLEWRRVDFANRLIYLEASHTKAGKRRSIPINEGAMAALK 242 Query: 3487 NWMEIRKNIKTEYDNLFISERKTPYTRSGIWKIFKKYCEQIGITDVTIHSFRHYFCRTLL 3666 M R E +F R + FK+ C+ I D TIH RH L+ Sbjct: 243 RRMAFRSETSPECPWVFA--RANGDRVISLSAGFKQACQAAKIADFTIHDLRHTCAAWLV 300 Query: 3667 KNGVDISVVAKLAGHSS 3717 GV ++ V L GHS+ Sbjct: 301 SAGVPLADVRDLLGHST 317 >ref|NP_076801.1|integrase Length = 382 Score = 42.7 bits (99), Expect = 3e-04 Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 31/207 (14%) Frame = +1 Query: 3193 YNPARN------IRKIKLQSPNIAKSLDEQTYRALRRHVYRGGNKAHIAMF-EIFTRCGV 3351 YNPAR I+ +K K L++ +AL +Y N +A+ E + G Sbjct: 149 YNPARKAKLPKKIQTVKDLEKIQNKYLEQNELKALLSELYSRPNTRRLALLAEFMSLNGC 208 Query: 3352 RNFELINIRLTDFDISDRK----GTL-KIVGKLNKVRYIPLHK-------------DVRD 3477 R E I ++ ++ S+RK GTL K VG V+ P ++ D Sbjct: 209 RMGEAIALKKENYKRSERKIDIHGTLDKTVGYSKGVKTTPKTASSFRTVDLSDREIEILD 268 Query: 3478 AINNWMEIRKNIKTEYDNL---FISERKTPYTRSGIWKIFKKYCEQIGIT---DVTIHSF 3639 I + K++ +Y+ + F+S+R P + K+ ++ +++ H F Sbjct: 269 EIIEQNNLSKSVINDYNEMGYIFVSKRGIPLQTNSFNLAIKRANSRLKSPINKNLSSHIF 328 Query: 3640 RHYFCRTLLKNGVDISVVAKLAGHSSG 3720 RH L +N V + + GH G Sbjct: 329 RHTLISYLAENNVPLKAIVDRVGHKDG 355 >ref|NP_075464.1|integrase Length = 401 Score = 42.4 bits (98), Expect = 4e-04 Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 33/238 (13%) Frame = +1 Query: 3097 QITENKGAFYGYLKLT-KSLRRNFELNINKKKVYNPARNIRKIKLQSPNIAKSLDEQTYR 3273 Q+T G G +K K E + K+ + I I+ + L+ Sbjct: 137 QVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIEKDESKMYNYLEMNQVL 196 Query: 3274 ALRRHVYRGGNKAH-------IAMFEIFTRCGVRNFELINIRLTDFDISDRKGTLKIVGK 3432 +R H+ NK H ++ E+ G+R EL ++ D D+ ++ T+ I G Sbjct: 197 QIRDHILND-NKLHKRNRILIASILEVQALTGMRIGELQALQEKDIDLLNK--TINITGT 253 Query: 3433 LNKVRYIPL--HKDVRDAINNWMEIRKNIKT----------------------EYDNLFI 3540 +++++Y +KD I++ I N +T + +F Sbjct: 254 IHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFT 313 Query: 3541 SERKTPYTRSGIWKIFKKYCEQIGITD-VTIHSFRHYFCRTLLKNGVDISVVAKLAGH 3711 +++ P + I + KK + + + VT H+FRH L++ V + + K GH Sbjct: 314 TKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGH 371 >ref|NP_058467.1|integrase Length = 401 Score = 42.4 bits (98), Expect = 4e-04 Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 33/238 (13%) Frame = +1 Query: 3097 QITENKGAFYGYLKLT-KSLRRNFELNINKKKVYNPARNIRKIKLQSPNIAKSLDEQTYR 3273 Q+T G G +K K E + K+ + I I+ + L+ Sbjct: 137 QVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIEKDESKMYNYLEMNQVL 196 Query: 3274 ALRRHVYRGGNKAH-------IAMFEIFTRCGVRNFELINIRLTDFDISDRKGTLKIVGK 3432 +R H+ NK H ++ E+ G+R EL ++ D D+ ++ T+ I G Sbjct: 197 QIRDHILND-NKLHKRNRILIASILEVQALTGMRIGELQALQEKDIDLLNK--TINITGT 253 Query: 3433 LNKVRYIPL--HKDVRDAINNWMEIRKNIKT----------------------EYDNLFI 3540 +++++Y +KD I++ I N +T + +F Sbjct: 254 IHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFT 313 Query: 3541 SERKTPYTRSGIWKIFKKYCEQIGITD-VTIHSFRHYFCRTLLKNGVDISVVAKLAGH 3711 +++ P + I + KK + + + VT H+FRH L++ V + + K GH Sbjct: 314 TKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGH 371 >ref|NP_076696.1|integrase Length = 377 Score = 42.4 bits (98), Expect = 4e-04 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 7/99 (7%) Frame = +1 Query: 3442 VRYIPLHKDVRDAINNWMEI------RKNIKTEYDNLFISERKTPYTRSGIWKIFKKYCE 3603 VR++ + + N+ E R I+ E+ +F + + T + + K + C+ Sbjct: 246 VRFLAIDSSTMQVMINYKEQQEKLLKRLEIEPEHPFVFYNIKNGLITNNSLNKQLRNMCK 305 Query: 3604 QIGITDV-TIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 ++G + T H RH T+L G++I V+K GHSS Sbjct: 306 KLGFKKIITCHGLRHTHASTMLYKGINILYVSKRLGHSS 344 >ref|NP_862871.1|gp32 Length = 188 Score = 42.0 bits (97), Expect = 5e-04 Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 8/104 (7%) Frame = +1 Query: 3430 KLNKVRYIPLHKDVRDAINNWMEIRKNIKTEYDNLFISERKTPYT--------RSGIWKI 3585 K KV+ ++ ++R A+N++ I+ N YD LF S++K R ++I Sbjct: 63 KTGKVKRFAINPELRKALNHY--IKANDLQGYDYLFPSKKKVRTDGVRIAHIGRVAAYQI 120 Query: 3586 FKKYCEQIGITDVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 K+ E +G+ ++ HS R F + +++++ +L HSS Sbjct: 121 LKQAAEHVGLKNIGTHSMRKSFGYHHYRRNQNVAILMELFNHSS 164 >ref|NP_510895.1|similar to phage phi 11 integrase Length = 349 Score = 41.6 bits (96), Expect = 6e-04 Identities = 59/237 (24%), Positives = 96/237 (40%), Gaps = 19/237 (8%) Frame = +1 Query: 3061 KVPDEQIKEYIIQITENKGAFYGYLKLTKSLRRNFELNINKKKVY-----NPARNIRKIK 3225 K+ Q +E+ + EN + +++ F++ IN K Y +P +I+ I Sbjct: 100 KITQNQCQEFRKYLIENVAS----TNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIP 155 Query: 3226 LQSPNIA-----------KSLDEQTYRALRRHVYRGGNKAHIAMFEIFTRCGVRNFELIN 3372 P K ++EQ YR L ++ G + AM ++T E I+ Sbjct: 156 RVKPKPKFMMREEFEKRIKDIEEQDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKE-IS 214 Query: 3373 IRLTDFDISDRKGTLKIVGKLNKVR-YIPLHKDVRDAINNWMEIRKNIKTEYD--NLFIS 3543 I T DIS+R T+ K + +PL K + + + K + +D + FI Sbjct: 215 INKT-MDISNR--TIYPRPKTDSSEDIVPLPKFINTMLTERHQREKELNKYFDERSYFIF 271 Query: 3544 ERKTPYTRSGIWKIFKKYCEQIGITDVTIHSFRHYFCRTLLKNGVDISVVAKLAGHS 3714 P S + K F+K IH+ RH + L NGVDI V+ L H+ Sbjct: 272 GGMAPKHYSHVQKKFQK-----AFPHYNIHALRHSYASYLANNGVDIFVLQSLMRHA 323 >ref|NP_511007.1|integrase Length = 384 Score = 41.2 bits (95), Expect = 8e-04 Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 17/148 (11%) Frame = +1 Query: 3319 AMFEIFTRCGVRNFELINIRLTDFDISDRKGTLK-----------IVGKLNKVRYIPLHK 3465 A+ + + G+R E+I + D + + R T+ I K K R I + Sbjct: 188 AVIFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTFIDTKTKKSRVIYIDN 247 Query: 3466 DVRDAINNWMEIRKN------IKTEYDNLFISERKTPYTRSGIWKIFKKYCEQIGITDVT 3627 +++++ + IK LFI+ P + K KK C I VT Sbjct: 248 STAQYLHSYLNWHTDYMKEHAIKNPLMLLFITYHNKPVDNASCNKALKKICSTINSEPVT 307 Query: 3628 IHSFRHYFCRTLLKNGVDISVVAKLAGH 3711 +H RH ++ G+DI VA GH Sbjct: 308 LHKLRHTHTGLCVEAGMDIIYVADRLGH 335 >ref|NP_803307.1|integrase Length = 401 Score = 40.8 bits (94), Expect = 0.001 Identities = 49/237 (20%), Positives = 93/237 (39%), Gaps = 32/237 (13%) Frame = +1 Query: 3097 QITENKGAFYGYLKLT-KSLRRNFELNINKKKVYNPARNIRKIKLQSPNIAKSLDEQTYR 3273 Q+T G G +K K E + K+ + I I+ + L+ Sbjct: 137 QVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIEKDESKMYNYLEMNQVL 196 Query: 3274 ALRRHVYRGG-----NKAHIA-MFEIFTRCGVRNFELINIRLTDFDISDRKGTLKIVGKL 3435 +R H+ N+ IA + E+ G+R EL ++ D D+ ++ T+ I G + Sbjct: 197 QIRDHILNDNKLQKRNRILIASILEVQALTGMRIGELQALQEKDIDLLNK--TINITGTI 254 Query: 3436 NKVRYIPL--HKDVRDAINNWMEIRKNIKT----------------------EYDNLFIS 3543 ++++Y +KD I++ I N +T + +F + Sbjct: 255 HRIKYEKGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTT 314 Query: 3544 ERKTPYTRSGIWKIFKKYCEQIGITD-VTIHSFRHYFCRTLLKNGVDISVVAKLAGH 3711 ++ P + I + KK + + + VT H+FRH L++ V + + K GH Sbjct: 315 KKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGH 371 >ref|NP_150133.1|integrase Length = 375 Score = 39.3 bits (90), Expect = 0.003 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 16/148 (10%) Frame = +1 Query: 3322 MFEIFTRCGVRNFELINIRLTDFDISDRK----GTLKIVGKL-------NKVRYIPLHKD 3468 M + T G+R EL ++L + D K G V K+ N +R I + + Sbjct: 201 MVLVLTLTGMRYGELTALQLKNIDFETNKIEITGNFDSVNKIKTLPKTTNSIRTIKVSES 260 Query: 3469 VRDAINNW---MEIRKNIKTEYDNLFISER-KTPYTRSGIWKIFKKYCEQIGIT-DVTIH 3633 V +AI + R + D +F E+ P T + +I KKY +Q I +++ H Sbjct: 261 VIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQILKKYGKQAKIEKNLSSH 320 Query: 3634 SFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 FRH L ++G+ I + GHS+ Sbjct: 321 IFRHSHISFLAESGLPIKSIMDRVGHSN 348 >ref|NP_061591.2|integrase Length = 348 Score = 38.5 bits (88), Expect = 0.005 Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 20/239 (8%) Frame = +1 Query: 3061 KVPDEQIKEYIIQITENKGAFYGYLKLTKSLRRNFELNINKKK-----VYNPARNIRKIK 3225 K+ Q + + + G GY +S+ F+ IN K +Y+P ++ I Sbjct: 100 KITTTQCTAFRNYLLNDAGLSVGY---ARSVWAGFKAVINYAKKHYKLLYDPTLSVTPIP 156 Query: 3226 LQSPNIAKSLDEQTYRALRRHVYRGGNKAHIAMFEIFTRCGVRNFELINIRLTDFDISDR 3405 P AK + + + V + N + ++ G+R E + ++ D++ Sbjct: 157 RTKPQ-AKFITREEFD---EKVEQITNDTSRQLTKLLFYSGLRIGEALALQWKDYN--KI 210 Query: 3406 KGTLKIVGKLN----KVRY----------IPLHKDVRDAINN-WMEIRKNIKTEYDNLFI 3540 KG + + K+N K+ Y IP+ +R+ + N + E K K +N FI Sbjct: 211 KGEIDVNKKINLSNRKIEYNLKKKALKGIIPVPNLIREMLENMYNESSKRYKYFDENYFI 270 Query: 3541 SERKTPYTRSGIWKIFKKYCEQIGITDVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 P I I Y + +++ IH RH + L+ NGVD+ ++ +L HS+ Sbjct: 271 FGGLEP-----IRYITYSYHFKSVFSNLKIHHLRHSYASYLINNGVDMYLLMELMRHSN 324 >ref|NP_059584.1|Int Length = 387 Score = 38.5 bits (88), Expect = 0.005 Identities = 46/213 (21%), Positives = 83/213 (38%), Gaps = 11/213 (5%) Frame = +1 Query: 3112 KGAFYGYLK-LTKSLRRNFELNINKKKVYNPARNIRKIKLQSPNIAKSLDEQTYRALRRH 3288 K ++K L ++ R +++ + P ++I+ P+ AK L ++ L+ Sbjct: 146 KATHLSFIKALLRAAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAKRLIDECQEPLK-- 203 Query: 3289 VYRGGNKAHIAMFEIFTRCGVRNFELINIRLTDFDISDR---------KGTLKIVGKLNK 3441 ++ E G+R +IN+ D+ + K I LN Sbjct: 204 ----------SVVEFALSTGLRRSNIINLEWQQIDMQRKVAWIHPEQSKSNHAIGVALND 253 Query: 3442 VRYIPLHKDVRDAINNWMEIRKNIKTEYDNLFISE-RKTPYTRSGIWKIFKKYCEQIGIT 3618 L K + + + W+ + K T+ D RK Y + W+ K + GI Sbjct: 254 TACRVLKKQIGNH-HKWVFVYKESSTKPDGTKSPVVRKMRYDANTAWRAALK---RAGIE 309 Query: 3619 DVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 D H RH + L++ GV ISV+ ++ G S Sbjct: 310 DFRFHDLRHTWASWLVQAGVPISVLQEMGGWES 342 >ref|NP_852561.1|DNA integration Length = 369 Score = 38.1 bits (87), Expect = 0.007 Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 18/141 (12%) Frame = +1 Query: 3346 GVRNFELINIRLTDFDISDRKGTL-KIVGKLNKV----------RYIPLHKDVRDAINNW 3492 G+R E++ +R D D T+ + G NK+ R IP+ + A+ Sbjct: 199 GMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPNETIAALKKH 258 Query: 3493 MEIRKNIKTEYDNLFI-------SERKTPYTRSGIWKIFKKYCEQIGITDVTIHSFRHYF 3651 + K + + ++ +E R+ K F + ++GI ++ H RH Sbjct: 259 KILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHKVGIKEIKFHDLRHTH 318 Query: 3652 CRTLLKNGVDISVVAKLAGHS 3714 LLK GV+ ++++ GH+ Sbjct: 319 ATLLLKQGVNPKIISERLGHT 339 >ref|NP_720278.1|Int Length = 387 Score = 37.7 bits (86), Expect = 0.009 Identities = 46/213 (21%), Positives = 83/213 (38%), Gaps = 11/213 (5%) Frame = +1 Query: 3112 KGAFYGYLK-LTKSLRRNFELNINKKKVYNPARNIRKIKLQSPNIAKSLDEQTYRALRRH 3288 K ++K L ++ R +++ + P ++I+ P+ AK L ++ L+ Sbjct: 146 KATHLSFIKALLRAAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAKRLIDECPEPLK-- 203 Query: 3289 VYRGGNKAHIAMFEIFTRCGVRNFELINIRLTDFDISDR---------KGTLKIVGKLNK 3441 ++ E G+R +IN+ D+ + K I LN Sbjct: 204 ----------SVVEFALSTGLRRSNIINLEWQQIDMQRKVAWIHPEQSKSNQAIGVALND 253 Query: 3442 VRYIPLHKDVRDAINNWMEIRKNIKTEYDNLFISE-RKTPYTRSGIWKIFKKYCEQIGIT 3618 L K + + + W+ + K T+ D RK Y + W+ K + GI Sbjct: 254 TACRVLKKQIGNH-HKWVFVYKESSTKPDGTKSPVVRKMRYDANTAWRSALK---RAGIE 309 Query: 3619 DVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 D H RH + L++ GV ISV+ ++ G S Sbjct: 310 DFRFHDLRHTWASWLVQAGVPISVLQEMGGWES 342 >ref|NP_803254.1|integrase Length = 348 Score = 37.4 bits (85), Expect = 0.012 Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 15/193 (7%) Frame = +1 Query: 3184 KKVYNPARNIRKIKLQSPNIAKSLDEQTYRALRRHVYRGGNKAHIAMFEIFTRCGVRNFE 3363 K +Y+P ++ I P AK + + + V + N + + G+R E Sbjct: 143 KLLYDPTLSVTPIPRTKPQ-AKFITREEFD---EKVEQITNDTSRQLTRLLFYSGLRIGE 198 Query: 3364 LINIRLTDFDISDRKGTLKIVGKLN----KVRY----------IPLHKDVRDAINN-WME 3498 + ++ D+D KG + + K+N K+ Y IP+ +R+ + N + E Sbjct: 199 ALALQWKDYD--KIKGEIDVNKKINLSNRKIEYNLKKESSKGIIPVPNLIREMLKNMYNE 256 Query: 3499 IRKNIKTEYDNLFISERKTPYTRSGIWKIFKKYCEQIGITDVTIHSFRHYFCRTLLKNGV 3678 K K +N FI P I + Y + ++ IH RH + L+ NGV Sbjct: 257 SSKRYKYFDENYFIFGGLEP-----IRYVTYSYHFKSVFPNLKIHHLRHSYASYLINNGV 311 Query: 3679 DISVVAKLAGHSS 3717 D+ ++ +L HS+ Sbjct: 312 DMYLLMELMRHSN 324 >ref|NP_116524.1|integrase Length = 374 Score = 37.0 bits (84), Expect = 0.015 Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 20/158 (12%) Frame = +1 Query: 3304 NKAHIAMFEIFTRCGVRNFELINIRLTDFDISDR----KGTLKIVGKLNKVRYIPLHKDV 3471 N + M I + G+R E + D D ++ + T K+ + + Sbjct: 187 NYSSPTMLFIISITGMRASEAFGLVWDDIDFNNNTIKCRRTWNYRNKVGGFKKPKTDAGI 246 Query: 3472 RDAI--NNWMEIRKNIKTEYDNLFISERKTPY-------------TRSGIWKIFKKYCEQ 3606 RD + + M++ K+ + + LF S P T S + ++ Sbjct: 247 RDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLDHALKK 306 Query: 3607 IGI-TDVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 + I T +TIH RH LL +GVDI V+K GH+S Sbjct: 307 LNISTPLTIHGLRHTHASVLLYHGVDIMTVSKRLGHAS 344 >ref|YP_006360.1|Int Length = 387 Score = 36.6 bits (83), Expect = 0.020 Identities = 46/213 (21%), Positives = 83/213 (38%), Gaps = 11/213 (5%) Frame = +1 Query: 3112 KGAFYGYLK-LTKSLRRNFELNINKKKVYNPARNIRKIKLQSPNIAKSLDEQTYRALRRH 3288 K ++K L ++ R +++ + P ++I+ P+ AK L ++ L+ Sbjct: 146 KATHLSFIKALLRAAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAKRLIDECPEPLK-- 203 Query: 3289 VYRGGNKAHIAMFEIFTRCGVRNFELINIRLTDFDISDR---------KGTLKIVGKLNK 3441 ++ E G+R +IN+ D+ + K I LN Sbjct: 204 ----------SVVEFALSTGLRRSNIINMDWQQIDMQRKVAWIHPEQSKSNQAIGVALND 253 Query: 3442 VRYIPLHKDVRDAINNWMEIRKNIKTEYDNLFISE-RKTPYTRSGIWKIFKKYCEQIGIT 3618 L K + + + W+ + K T+ D RK Y + W+ K + GI Sbjct: 254 TACRVLKKQIGNH-HKWVFVYKESSTKPDGTKSPVVRKMRYDANTAWRSALK---RAGIE 309 Query: 3619 DVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 D H RH + L++ GV ISV+ ++ G S Sbjct: 310 DFRFHDLRHTWASWLVQAGVPISVLQEMGGWES 342 >ref|NP_996675.1|integrase Length = 374 Score = 36.6 bits (83), Expect = 0.020 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 20/158 (12%) Frame = +1 Query: 3304 NKAHIAMFEIFTRCGVRNFELINIRLTDFDISDR----KGTLKIVGKLNKVRYIPLHKDV 3471 N + M I + G+R E + D D ++ + T K+ + + Sbjct: 187 NYSSPTMLFIISITGMRASEAFGLVWDDIDFNNNTIKCRRTWNYRNKVGGFKKPKTDAGI 246 Query: 3472 RDAI--NNWMEIRKNIKTEYDNLFISERKTPY-------------TRSGIWKIFKKYCEQ 3606 RD + + M++ K+ + + LF S P T S + + ++ Sbjct: 247 RDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLEHALKK 306 Query: 3607 IGI-TDVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 + I T +T+H RH LL +GVDI V+K GH+S Sbjct: 307 LKISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHAS 344 >ref|NP_076573.1|integrase Length = 374 Score = 36.6 bits (83), Expect = 0.020 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 20/158 (12%) Frame = +1 Query: 3304 NKAHIAMFEIFTRCGVRNFELINIRLTDFDISDR----KGTLKIVGKLNKVRYIPLHKDV 3471 N + M I + G+R E + D D ++ + T K+ + + Sbjct: 187 NYSSPTMLFIISITGMRASEAFGLVWDDIDFNNNTIKCRRTWNYRNKVGGFKKPKTDAGI 246 Query: 3472 RDAI--NNWMEIRKNIKTEYDNLFISERKTPY-------------TRSGIWKIFKKYCEQ 3606 RD + + M++ K+ + + LF S P T S + ++ Sbjct: 247 RDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLDHALKK 306 Query: 3607 IGI-TDVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 + I T +T+H RH LL +GVDI V+K GH+S Sbjct: 307 LNISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHAS 344 >ref|NP_862840.1|gp1 Length = 375 Score = 36.2 bits (82), Expect = 0.026 Identities = 54/240 (22%), Positives = 103/240 (42%), Gaps = 27/240 (11%) Frame = +1 Query: 3079 IKEYIIQITENKGAFYGYLKLTKSLRRNFELNINKKKVYNPARNIRKIKLQSPNIAKSLD 3258 I+ I I ++KG Y ++ L+ F+ + + N N I + P + ++ Sbjct: 113 IQSKIENIIDSKGYHTAY-RVRSRLKSIFDYAVQYSYIENNEVNYTVIP-KKPETLEDIE 170 Query: 3259 EQ-----TYRALRRHVYRGGNKAH----IAMFEIFTRCGVRNFELINIRLTDFDISDRKG 3411 ++ T + ++ + NK + M + G+R EL ++L + D + K Sbjct: 171 KKRNKFLTMQEIKALIDALNNKPYQQKYADMVTVLALTGMRYGELTALQLKNIDFENNK- 229 Query: 3412 TLKIVGK---LNKVRYIP-LHKDVR-----DAINNWMEIRKNIKTEY-------DNLFIS 3543 ++I G +NK++ +P K +R DA+ ++ + TE D +F Sbjct: 230 -IEITGNFDSINKIKTLPKTAKSIRTILVSDAVIKAIQRQVVRLTERYQPLKDDDYIFCL 288 Query: 3544 ER-KTPYTRSGIWKIFKKYCEQIGIT-DVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 E +P T +I KKY + GI +++ H FRH L + G+ I + GH++ Sbjct: 289 EVWNSPITLPSFIQIIKKYGAKAGIEKNLSSHIFRHSHISYLAEAGLPIKSIMDRVGHAN 348 >ref|NP_108680.1|integrase Length = 374 Score = 36.2 bits (82), Expect = 0.026 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = +1 Query: 3616 TDVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 T +T+H RH LL +GVDI V+K GH+S Sbjct: 311 TPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHAS 344 >ref|NP_695029.1|Integrase Length = 374 Score = 36.2 bits (82), Expect = 0.026 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = +1 Query: 3616 TDVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 T +T+H RH LL +GVDI V+K GH+S Sbjct: 311 TPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHAS 344 >ref|NP_624303.1|integrase fragment Length = 112 Score = 36.2 bits (82), Expect = 0.026 Identities = 19/52 (36%), Positives = 26/52 (50%) Frame = +1 Query: 3562 TRSGIWKIFKKYCEQIGITDVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 TR I + K + I +VT H+ RH LL GV I V++ GHS+ Sbjct: 31 TREAINHVLTKDLKHIEAKNVTFHALRHSHASYLLSKGVSIQYVSERLGHSN 82 >ref|YP_164382.1|integrase Length = 369 Score = 35.8 bits (81), Expect = 0.034 Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 21/188 (11%) Frame = +1 Query: 3214 RKIKLQSPNIAKSLDEQT--YR---ALRRHVYRGGNKA--HIAMFEIFTRCGVRNFELIN 3372 RK + N AK DE+ YR L + VY +K+ H + T G+R E++ Sbjct: 150 RKASISGDNKAKKDDEKHLHYRDSQKLLQAVYERLDKSLTHYIILLALTS-GMRFAEIVG 208 Query: 3373 IRLTDFDISDRKGTL-KIVGKLNK-------------VRYIPLHKDVRDAINNWMEIRKN 3510 ++ DFD ++ K G K VR I + A NN ++ Sbjct: 209 LKREDFDFKQNTISINKTWGYTKKMHEGFGPTKNEQSVRKIKMDVQTMKAFNNLFDMLPE 268 Query: 3511 IKTEYDNLFISERKTPYTRSGIWKIFKKYCEQIGITDVTIHSFRHYFCRTLLKNGVDISV 3690 + S + + K+ K ++ I +++H RH LL GV I Sbjct: 269 NIHQLVFYSPSSKYKVISNGNANKLLKSLLGELKIEPISMHGLRHTHASVLLYKGVSIYY 328 Query: 3691 VAKLAGHS 3714 V++ GH+ Sbjct: 329 VSERLGHA 336 >ref|NP_818023.1|gp50 Length = 424 Score = 35.4 bits (80), Expect = 0.044 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 4/95 (4%) Frame = +1 Query: 3445 RYIPLHKDVRDAINNWMEIRKNIKTEYDNLFISERKTPYTRSGIWKIFKKYCEQIGIT-- 3618 R+I + + +RD + + + Y+ +F P T + + ++ C+ +GI Sbjct: 298 RWISIVEPLRDLLAELKGLDQG-PNPYNLVFHRGDGYPVTPTDDSRAWRALCDSVGIVAA 356 Query: 3619 --DVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 +T+HS RH L NGVD ++ GH+S Sbjct: 357 EGSLTLHSARHTAATVLRSNGVDEQTRMEILGHNS 391 >ref|NP_680502.1|integrase Length = 385 Score = 35.4 bits (80), Expect = 0.044 Identities = 46/195 (23%), Positives = 72/195 (36%), Gaps = 38/195 (19%) Frame = +1 Query: 3247 KSLDEQTYRALRRHVYRGGNKAHIAMFEIFTRC--GVRNFELINIRLTDFDISDRKGTLK 3420 K L+ + LR +V + N IA+ + T G R E+ LT DI ++K T+ Sbjct: 172 KFLEADQFEKLRDYVDQFANPQRIALMMVQTAIYSGARLGEIGG--LTWEDIDEKKSTIS 229 Query: 3421 IVGKLNKVRYIPLHKDVRDAINNWMEIRK------------------------------- 3507 I K K R++ +R+A +W + K Sbjct: 230 I-DKTFKYRFV-----IRNADGSWPDREKVFGPTKTPSSVRTIKVSPVLIASLHKLILAD 283 Query: 3508 ---NIKTEYDNLFISERKTPYTRSGIWKIFKKYCEQIGIT--DVTIHSFRHYFCRTLLKN 3672 I Y LF+ P +G+ K ++ + +GI H RH LL Sbjct: 284 RIKAINNPYHLLFLGPTGLPIYSNGVNKELRRALKHLGIERPGFGFHGLRHTHGSYLLYK 343 Query: 3673 GVDISVVAKLAGHSS 3717 G+DI V+ GH + Sbjct: 344 GLDIQYVSHRLGHEN 358 >ref|NP_777346.1|hypothetical protein Length = 395 Score = 35.4 bits (80), Expect = 0.044 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 6/110 (5%) Frame = +1 Query: 3403 RKGTLKIVGKLNKVRYIPLHKDVRDAINNWMEIRKNIKT------EYDNLFISERKTPYT 3564 R GTL V I L D + + W E + K ++ +F S + TP Sbjct: 231 RDGTLGPAKTPGSVAPIYLDPDTQALLAWWRERLEEEKASTPDWQDHGLMFPSSKGTPLE 290 Query: 3565 RSGIWKIFKKYCEQIGITDVTIHSFRHYFCRTLLKNGVDISVVAKLAGHS 3714 + + F E+ G++ +T H RH + L+ G+ VVA H+ Sbjct: 291 YNNFKRAFYALQEKAGVSRITPHGLRHTYTSLALRAGLPPKVVAARLRHA 340 >ref|YP_077249.1|Hypothetical protein Length = 163 Score = 34.7 bits (78), Expect = 0.076 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = +1 Query: 3622 VTIHSFRHYFCRTLLKNGVDISVVAKLAGHSS 3717 V HSFR+ F +K+G+ VVAK+ GH S Sbjct: 109 VNTHSFRYAFITKAIKDGLPAEVVAKITGHKS 140 >ref|YP_006956.1|putative recombination endonuclease, subunit D13 Length = 612 Score = 34.7 bits (78), Expect = 0.076 Identities = 20/54 (37%), Positives = 30/54 (55%) Frame = +2 Query: 1832 VDEITIKDLNFSYDDGKEVLKDINLTVKKNTICSIIGRSGAGKTTLCLLIARFF 1993 + +ITIK L FS + KDI + KN + +IG +G GK+T+ +I F Sbjct: 1 MSKITIKTLKFS--NVMSYGKDIVIHFDKNPVTQLIGGNGLGKSTIATVIEELF 52 >ref|NP_663635.1|putative integrase Length = 359 Score = 34.3 bits (77), Expect = 0.099 Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 27/204 (13%) Frame = +1 Query: 3184 KKVYNPARNIRKIK------LQSPNIAKSLDEQT-------YRALRRHVYRGGNKAHIAM 3324 +KV+N A + I+ + S I K ++E+ R V + + IA+ Sbjct: 134 RKVFNHAALLSYIQANPAAPVTSQGIKKKVEEKKDFYDTDELRDFMALVEKTNDIKKIAL 193 Query: 3325 FEIFTRCGVRNFELINIRLTDFDISDRKGTLKI--------VG------KLNKVRYIPLH 3462 F I G+R EL+ + D+ RK TL I VG K N R + L Sbjct: 194 FRILAFTGIRKGELLALEWKDY----RKSTLDINKAISHSPVGYEILPPKANSNRLLSLD 249 Query: 3463 KDVRDAINNWMEIRKNIKTEYDNLFISERKTPYTRSGIWKIFKKYCEQIGITDVTIHSFR 3642 + ++ E+ + E +F SE + S K + ++ I + IH+FR Sbjct: 250 EKTCKILD---ELHQTYP-ESTRIFESENGGMLSPSKPRKWLLEITKEKEIEPIRIHAFR 305 Query: 3643 HYFCRTLLKNGVDISVVAKLAGHS 3714 H L ++G+ + V GH+ Sbjct: 306 HTHASLLFESGMSLKQVQYRLGHA 329 >ref|NP_612851.1|putative integrase Length = 349 Score = 34.3 bits (77), Expect = 0.099 Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 9/138 (6%) Frame = +1 Query: 3325 FEIFTRCGVRNFELINIRLTDFDISDRKGTL-KIVGKLNKVRYIPLHK--------DVRD 3477 FE+ G+R+ EL+ + D D+ ++ + K +LN I K + + Sbjct: 186 FEVLFWTGMRSGELMALTFNDIDLKNKTININKTYTRLNGKDIINPPKTPKSKRKVSIPN 245 Query: 3478 AINNWMEIRKNIKTEYDNLFISERKTPYTRSGIWKIFKKYCEQIGITDVTIHSFRHYFCR 3657 A+ +++E +Y+ S+R +T+ + K+ C++ I + IH RH Sbjct: 246 ALCSYIETYITKLYDYNK---SDRIFSFTKYFLVHEMKRVCKKSNIPIIRIHDLRHSHAS 302 Query: 3658 TLLKNGVDISVVAKLAGH 3711 L++ G ++++ GH Sbjct: 303 LLIELGFTPLLISERLGH 320 >ref|NP_076635.1|integrase Length = 359 Score = 34.3 bits (77), Expect = 0.099 Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 27/204 (13%) Frame = +1 Query: 3184 KKVYNPARNIRKIK------LQSPNIAKSLDEQT-------YRALRRHVYRGGNKAHIAM 3324 +KV+N A + I+ + S I K ++E+ R V + + IA+ Sbjct: 134 RKVFNHAALLSYIQANPALPVTSQGIKKKVEEKKDFYDTDELRDFMALVEKTNDIKKIAL 193 Query: 3325 FEIFTRCGVRNFELINIRLTDFDISDRKGTLKI--------VG------KLNKVRYIPLH 3462 F I G+R EL+ + D+ RK TL I VG K N R + L Sbjct: 194 FRILAFTGIRKGELLALEWKDY----RKSTLDINKAISHSPVGYEILPPKANSNRLLSLD 249 Query: 3463 KDVRDAINNWMEIRKNIKTEYDNLFISERKTPYTRSGIWKIFKKYCEQIGITDVTIHSFR 3642 + ++ E+ + E +F SE + S K + ++ I + IH+FR Sbjct: 250 EKTCKILD---ELHQTYP-ESTRIFESENGGMLSPSKPRKWLLEITKEKEIEPIRIHAFR 305 Query: 3643 HYFCRTLLKNGVDISVVAKLAGHS 3714 H L ++G+ + V GH+ Sbjct: 306 HTHASLLFESGMSLKQVQYRLGHA 329 >ref|YP_025040.1|putative transposase A Length = 83 Score = 33.5 bits (75), Expect = 0.17 Identities = 13/39 (33%), Positives = 26/39 (66%) Frame = +1 Query: 2650 KYTQEFKESIVKAAIETGNAALITRQHGISKELVYRWIR 2766 +Y +EFK++I+ + +AA + R++GI V++WI+ Sbjct: 4 RYDKEFKQNIINLYKQGESAAQMAREYGIGYSTVHKWIQ 42 >ref|NP_958550.1|putative protein Length = 892 Score = 33.1 bits (74), Expect = 0.22 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = +2 Query: 776 TDSEDGARDLSKKIWVGVFMKDYIKFLKENVSKYRNRIIAASVLSLVSMFFILLN 940 T +G D S K G+++KDY+ +K++ SKY A VL L S F N Sbjct: 809 TRPANGVDDTSGKNVEGLYLKDYVDAIKKSASKY-----AVPVLDLYSSMFYPFN 858 >ref|NP_945240.1|integrase Length = 380 Score = 33.1 bits (74), Expect = 0.22 Identities = 41/204 (20%), Positives = 73/204 (35%), Gaps = 31/204 (15%) Frame = +1 Query: 3196 NPARNIRKIKLQSPNI------AKSLDEQTYRALRRHVYRGGNKAHIAMF-EIFTRCGVR 3354 NPAR + ++Q K L+E + L + +YR + I + E + G R Sbjct: 150 NPARRAKLPRVQKTLEDWKKVGQKYLEEDEIKLLLKELYRRPSTYRIGLLSEFMSLNGCR 209 Query: 3355 NFELINIRLTDFDISDR------------------KGTLKIVGKLNKVRYIPLHKDVRDA 3480 E + I + D K + K + + K++ + Sbjct: 210 IGEAVGIEPHNVDYESNTLQLHGTYDHTNGYQKGEKTSPKTLASYRETVMTTREKEILEE 269 Query: 3481 INNWMEIRKNIKTEYDNL---FISERKTPYTRSGIWKIFKKYCEQIGIT---DVTIHSFR 3642 + E+ KN Y ++ F ++ P + KK E++ ++T H FR Sbjct: 270 MEFMNELEKNTNPRYKDMGFIFTTKNGVPLQTNSFNLALKKANERLETPIQKNLTSHIFR 329 Query: 3643 HYFCRTLLKNGVDISVVAKLAGHS 3714 H L +N V + + GHS Sbjct: 330 HTLVSRLAENNVPLKAIMDRVGHS 353 >ref|NP_795373.1|putative integrase Length = 398 Score = 32.7 bits (73), Expect = 0.29 Identities = 24/88 (27%), Positives = 41/88 (46%) Frame = +1 Query: 3463 KDVRDAINNWMEIRKNIKTEYDNLFISERKTPYTRSGIWKIFKKYCEQIGITDVTIHSFR 3642 +D AI + I K+ E+D + I E + + F+K E +G VT H R Sbjct: 274 RDNATAIKKRLSIIKD--KEWDYISIKEDGNLINPNKLNDEFEKVNESVGFR-VTPHMMR 330 Query: 3643 HYFCRTLLKNGVDISVVAKLAGHSSGFV 3726 H+F + GV + ++K GH+ ++ Sbjct: 331 HFFTTQSIIAGVPMEALSKALGHTKMYM 358 >ref|YP_195169.1|RecA-like recombination protein Length = 343 Score = 32.7 bits (73), Expect = 0.29 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = +2 Query: 1910 VKKNTICSIIGRSGAGKTTLCLLIARFF---DPSSGEILLD 2023 + N I ++ G SG GKT CL + R F DP +G I + Sbjct: 51 IPSNKITALAGESGTGKTFFCLSVVRNFLNTDPDAGVIYFE 91 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,382,512 Number of Sequences: 14420 Number of extensions: 307425 Number of successful extensions: 1029 Number of sequences better than 0.5: 42 Number of HSP's better than 0.5 without gapping: 925 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1021 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1837608344 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig159 (4926 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_859396.1|hypothetical protein 104 1e-22 ref|YP_025041.1|putative transposase B 101 9e-22 ref|NP_536395.1|ISBt3 transposase subunit protein 99 6e-21 ref|NP_958229.1|gene 55 protein 91 9e-19 ref|NP_620626.1|putative transposase 40 0.002 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 104 bits (259), Expect = 1e-22 Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 9/247 (3%) Frame = -1 Query: 1116 IKRIIDEIY-ASYPEYGYRRMTSILNKDYHIHINRKRTRRYMREMGIHGFCPGPNLSKRI 940 +KR I +Y ++ YG R++ L ++ I + R R M MG+ G G + I Sbjct: 51 LKREIQRVYDENHQVYGVRKVWRQLLRE-GIRVARCTVARLMAVMGLAGVLRGKKVRTTI 109 Query: 939 HGKNLYP--YLLRNLKIDHPNQVWSIDVTYCRMKRGFMYMVAIIDWYSRYIVGFELSNTL 766 K + + R + P+Q+W D TY +GF+Y+ IID ++ YIVG+ +S+++ Sbjct: 110 SRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSM 169 Query: 765 DKTFVIEAIQKAI-KRYGKPEIMNSDQGSQFTSDDYINLLKNNGIKISMDGKGRALDNQR 589 + TFV++A+++A+ R I +SD+GSQ+ S Y LK G+ S G + DN Sbjct: 170 ETTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAM 229 Query: 588 IERFFRSYKWEKLYLEECETVQQLRQITKEYVEHYNHRRPHQSLDYKTPAE----YYFG- 424 E YK E ++ + + ++ T +V+ YN+RR L + PAE YY Sbjct: 230 AESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAEAEKAYYASI 289 Query: 423 GYDQLLA 403 G D L A Sbjct: 290 GNDDLAA 296 >ref|YP_025041.1|putative transposase B Length = 280 Score = 101 bits (251), Expect = 9e-22 Identities = 81/268 (30%), Positives = 131/268 (48%), Gaps = 19/268 (7%) Frame = -1 Query: 1182 LLSLNRTSVYY----KPAPVNEEEYLIKRIIDEIYASYPE-YGYRRMTSILNKDYH---I 1027 +L ++R Y KP+ E+ +K+ I I+A + + YG ++ LN + + Sbjct: 4 ILGVSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQPLQL 63 Query: 1026 HINRKRTRRYMREMGIHGF------CPGPNLSKRIHGKNLYPYLLRNLKIDHPNQVWSID 865 + +R R M+E+ IH + +K NL L ++ NQ W+ D Sbjct: 64 RCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNL---LKQDFSTTGLNQKWTAD 120 Query: 864 VTYCRMKR-GFMYMVAIIDWYSRYIVGFELSNTLDKTFVIEAIQKAIKR--YGKPEIMNS 694 +TY + KR G+ Y+ I+D +SR I+G+ S +D V++ ++ A+K I+++ Sbjct: 121 MTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIHT 180 Query: 693 DQGSQFTSDDYINLLKNNGIKISMDGKGRALDNQRIERFFRSYKWEKLY-LEECETVQQL 517 D GSQ+TSDDY L I+ S KG DN +E F S K E +Y + E + Sbjct: 181 DLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETA 240 Query: 516 RQITKEYVE-HYNHRRPHQSLDYKTPAE 436 + EYV YN +R H SL Y+TP + Sbjct: 241 AAVLFEYVHAFYNRKRIHSSLGYQTPLQ 268 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 98.6 bits (244), Expect = 6e-21 Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 8/253 (3%) Frame = -1 Query: 1143 APVNEEEYLIKRIIDEIYASYPEYGYRRMTSILNKDYHIHINRKRTRRYMREMGIHGFCP 964 A +E L I A+ YG ++ +N++ I + R R M+ G+ G Sbjct: 23 ARAKRDELLQPEIKRVWQANMQVYGVPKVWKQMNRE-GITVARCTVGRLMKLQGLRGAVR 81 Query: 963 GPNLSKRIHGKNL---YPYLLRNLKIDHPNQVWSIDVTYCRMKRGFMYMVAIIDWYSRYI 793 G + I + R K D PNQ+W D TY +G++Y+ +ID ++R I Sbjct: 82 GKRVRTTITDVTAPRPLDRVNRQFKADRPNQLWVSDFTYVSTWQGWLYVAFVIDVFARRI 141 Query: 792 VGFELSNTLDKTFVIEAIQKAIKRYGKPE----IMNSDQGSQFTSDDYINLLKNNGIKIS 625 VG+ +S+++ FV++A+++A+ E I +SD+GSQ+ S Y L GI+ S Sbjct: 142 VGWRVSSSMTTDFVLDALEQALYARQPGEDGTLIHHSDRGSQYVSIRYSERLAEAGIEPS 201 Query: 624 MDGKGRALDNQRIERFFRSYKWEKLYLE-ECETVQQLRQITKEYVEHYNHRRPHQSLDYK 448 + +G + DN E YK E ++ +T + + T E+V YNH R + L Y Sbjct: 202 VGSRGDSYDNALAETINGLYKTELIHRRAPWKTRESVELATLEWVAWYNHHRLMEPLGYI 261 Query: 447 TPAEYYFGGYDQL 409 PAE Y QL Sbjct: 262 PPAEAEANYYRQL 274 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 91.3 bits (225), Expect = 9e-19 Identities = 73/273 (26%), Positives = 130/273 (47%), Gaps = 13/273 (4%) Frame = -1 Query: 1242 DRMKMIDRNEKKLSITRQAELLSLNRTSVYY---KPAPVNEEEYLIKRIIDEIYA-SYPE 1075 ++ +I + + + ++R+S Y +P + +++ + E++ S+ Sbjct: 14 EQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGS 73 Query: 1074 YGYRRMTSILNKDYHIHINRKRTRRYMREMGIHGFCPGPNLSKRIHGKN---LYPYLLRN 904 G R + ++ + + + R R M+E+G+ C P + G + YL R Sbjct: 74 AGARSIATMATRRGY-QMGRWLAGRLMKELGLVS-CQQPTHRYKRGGHEHVAIPNYLERQ 131 Query: 903 LKIDHPNQVWSIDVTYCRMKRGFMYMVAIIDWYSRYIVGFELSNTLDKTFVIEAIQKAIK 724 + PNQVW DVTY + + Y+ ++D ++R VG+ +S + D ++A++ A + Sbjct: 132 FAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWE 191 Query: 723 RYGKP--EIMNSDQGSQFTSDDYINLLKNNGIKISMDGKGRALDNQRIERFFRSYKWEKL 550 GKP + +SDQGS +TS + LL I+ SM +G DN +ERFFRS K E + Sbjct: 192 TRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWM 251 Query: 549 ----YLEECETVQQLRQITKEYVEHYNHRRPHQ 463 Y+ E IT V +Y+ RPH+ Sbjct: 252 PVVGYVSFSEAA---HAITDYIVGYYSALRPHE 281 >ref|NP_620626.1|putative transposase Length = 362 Score = 40.0 bits (92), Expect = 0.002 Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 17/150 (11%) Frame = -1 Query: 831 YMVAIIDWYSRYIVGFELSNTLDKTFVIEAIQKAIKRYGKP-----EIMNSDQGSQFTSD 667 Y+ ID +R +G+ + + L I+A++KAI + + +D GS+F ++ Sbjct: 206 YVYDFIDEKTRLALGY-VYDKLSTDNAIDAVKKAISDFKNIFGIIITRIRTDNGSEFINN 264 Query: 666 ------------DYINLLKNNGIKISMDGKGRALDNQRIERFFRSYKWEKLYLEECETVQ 523 ++ L + I N +IERF ++Y ++ E+ Sbjct: 265 YRNNQKISVKKTNFTQFLTDKNILHQTTPVRSPQSNGKIERFHQNYTKLFVFEEKILNAV 324 Query: 522 QLRQITKEYVEHYNHRRPHQSLDYKTPAEY 433 L+ +Y YN R H+SL+++TP + Sbjct: 325 SLQNKLNDYYYFYNFERVHKSLNFQTPFNF 354 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,647,876 Number of Sequences: 14420 Number of extensions: 469493 Number of successful extensions: 1331 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 1192 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1323 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2430867401 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig160 (3512 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,131,155 Number of Sequences: 14420 Number of extensions: 307565 Number of successful extensions: 875 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 798 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 875 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1721954672 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig161 (7675 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 50 5e-06 ref|NP_852013.1|DNA polymerase 34 0.20 >ref|NP_046572.1|ABC transporter Length = 705 Score = 49.7 bits (117), Expect = 5e-06 Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 14/186 (7%) Frame = -2 Query: 4515 DINLEVYRGDVFGFLGPNGAGKTTAMKIMTGLMHPNSGDVKIFGHSVITEFEQAMKKVGC 4336 DINL + R D +G +G GK+T K ++ L + + G + +++K Sbjct: 501 DINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIV 560 Query: 4335 IIETAESYAYLTPYENLKLFARF-YDDVDDKRI-----DEVLELTGILKFK-KEKVKNFS 4177 I+ T ENL + F +++++ I + + L +K E N S Sbjct: 561 YIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLS 620 Query: 4176 LGMKQRLGLAAAILSRPELVILDEPLNGLD-------VEGMIEIRKLIKALAENEKTTFF 4018 G KQRL LA AIL +P+++ILDE L+ +D E + + LI + N+ + F Sbjct: 621 TGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCLIILITHNDPSNFK 680 Query: 4017 ISSHLI 4000 + L+ Sbjct: 681 YNKKLV 686 >ref|NP_852013.1|DNA polymerase Length = 784 Score = 34.3 bits (77), Expect = 0.20 Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 9/193 (4%) Frame = -1 Query: 5359 NAVIAYAAKKTVFDESQRQNGIDLPVIKNDVFVKEVRGRANLNGDGIIENLFGEIIVSGS 5180 N I T D S++Q G + N V + VR NL+GD I E++ S Sbjct: 117 NQTIKQVNHITDLDLSKKQ-GKQMRNDVNMVLERRVRSSNNLDGDMWIYGRHYEMVDSYR 175 Query: 5179 EENGTKHDFKIELVFKVYNINSTVVEKPDLTGKKVEKTVVQNGYNSNALQKYMGKWKNDI 5000 + N IEL ++ N + E+ T + +K + + ++KY ND+ Sbjct: 176 KTN-----VSIELCGRMLLNNGLIDEQYLKTDFEYDKYDLDTDLTWHEVRKYREFIFNDL 230 Query: 4999 VIEESDRFVKIGERIIEITS-------FDSDYVYGTYTEIYKDEYADYGSSNSYSLKANI 4841 E+ +++ I+ +T + D+ T+T+ K+EYA+Y + L I Sbjct: 231 D-EKQMKYIHNDVIILALTCKHYSKLFYGFDFEKQTFTQNIKEEYANYNDMAKFQLLKQI 289 Query: 4840 --NEERGRLEITD 4808 N L++TD Sbjct: 290 GDNMTGKHLKLTD 302 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,438,847 Number of Sequences: 14420 Number of extensions: 844091 Number of successful extensions: 2512 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 2120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2511 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 3728022793 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig162 (8820 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_690795.1|ORF11 395 e-110 ref|NP_511033.1|primase 370 e-102 ref|NP_680517.1|putative primase 350 2e-96 ref|NP_050131.1|putative DNA-polymerase or DNA-primase 291 6e-79 ref|NP_958698.1|Bbp29 259 4e-69 ref|NP_996591.1|primase 259 4e-69 ref|NP_996639.1|primase 259 4e-69 ref|YP_024966.1|putative primase 256 2e-68 ref|NP_047955.2|gp9a 243 2e-64 ref|NP_569803.1|hypothetical protein 240 2e-63 ref|NP_813724.1|gp9a 237 2e-62 ref|YP_024889.1|putative primase 230 2e-60 ref|NP_795676.1|putative DNA primase 103 4e-22 ref|NP_818646.1|gp108 94 2e-19 ref|NP_818445.1|gp145 82 1e-15 ref|NP_050001.1|putative replication protein 69 8e-12 ref|NP_042036.1|DNA primase 69 8e-12 ref|NP_795618.1|hypothetical protein 68 1e-11 ref|NP_795448.1|hypothetical protein 68 1e-11 ref|NP_695090.1|hypothetical protein 67 2e-11 ref|NP_049424.1|putative primase 67 2e-11 ref|NP_049423.1|Hypothetical protein 67 2e-11 ref|NP_695091.1|putative primase 67 3e-11 ref|NP_050002.1|putative primase 67 3e-11 ref|NP_049955.1|putative primase 67 3e-11 ref|NP_049954.1|putative replication protein 67 3e-11 ref|NP_056712.1|putative primase 67 3e-11 ref|NP_056711.1|gp271 66 5e-11 ref|NP_076775.1|helicase 66 5e-11 ref|NP_795450.1|putative DNA primase 56 7e-08 ref|NP_795620.1|putative DNA primase 52 8e-07 ref|NP_700379.1|Major capsid protein precursor 52 1e-06 ref|NP_543092.1|putative major capsid protein 50 4e-06 ref|NP_892050.1|capsid protein 43 5e-04 ref|NP_813696.1|gp36 40 0.005 ref|NP_047927.1|gp36 39 0.007 ref|NP_076774.1|hypothetical protein 38 0.021 ref|NP_899347.1|hypothetical protein 35 0.10 ref|NP_050656.1|Com 34 0.30 ref|NP_599037.1|capsid 33 0.39 >ref|NP_690795.1|ORF11 Length = 806 Score = 395 bits (1016), Expect = e-110 Identities = 200/450 (44%), Positives = 288/450 (64%), Gaps = 8/450 (1%) Frame = -3 Query: 7210 YHRTDSGNAERLRDRFGEIIRYCPAFKYWLVYDGCCWRKETGELMQ-FAIKTARDMLAEA 7034 +H T+ GNAER+ G+ IRYC + WL+++G W++++ ++ +T R + EA Sbjct: 327 FHLTELGNAERIVYYHGKNIRYCNELE-WLIWNGKMWQEDSKRKIEAITAQTLRAIYGEA 385 Query: 7033 SRIEDEAARKELVRHAMQSENAG-RLKAMIDVASNLEGMVIMPDEIDSDIWKLNCRNGVV 6857 ED K+L A + E R+ ++D + + E+DS + NC NGV+ Sbjct: 386 QATEDGYREKQLNDWAKKCERRNIRMNTILDARPMVS---VRKQELDSHKYLFNCENGVI 442 Query: 6856 DLKTGELLPHKREYYMSKICPVEYKPSSKAPKWMEFLNTIT-----GGSKELVRYLQKAV 6692 DLKTG+LLPH R+ +KI PV Y+ + P W F+ +I + E++ +LQKA+ Sbjct: 443 DLKTGDLLPHDRDLLFTKISPVAYEKDADCPNWKAFMESIFIDEEGNPNYEIIEFLQKAI 502 Query: 6691 GSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLGDYARNTPSETFMAKRIEA-IGNDI 6515 G SL+G+ +EQ +F L+G G NGKSTF+NT+ LLGDY R T S+TF+ K+ ++ I NDI Sbjct: 503 GYSLTGETTEQVMFFLFGNGRNGKSTFINTVQQLLGDYGRQTNSDTFIKKKNDSSINNDI 562 Query: 6514 ARLQGARLVTAIEINEGQRLSEALIKSFTGGDRITARFLYGEYFDFQPQFTPFLVVNHRP 6335 ARL GAR V+A+E EGQ+LSE+L+K TGG++++ARFL EYF+F P+F F NH+P Sbjct: 563 ARLDGARFVSAVESEEGQQLSESLVKQITGGEKMSARFLRQEYFEFTPEFKVFFTTNHKP 622 Query: 6334 VIRDTSHSIWRRIKLIPFTVTIPEDKKDKQLPAKLREELPGILSWAVEGCLLWQKEGLNM 6155 +++ + IWRRI+L+PFTVTIP++K DKQLP KL E+PGIL WAVEGCL+WQKEGL Sbjct: 623 IVKGSDEGIWRRIRLVPFTVTIPKEKVDKQLPQKLAAEMPGILRWAVEGCLMWQKEGLTE 682 Query: 6154 PDEVKKATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRYAYETWCRENGDYPLGQKLF 5975 P++++KATEGYRE+MD ++EE CI+ KV + + Y+ WC EN + L + F Sbjct: 683 PEDIRKATEGYREDMDILGPYMEERCILHPTTKVEAKELYKDYKDWCFENDEIELKNRAF 742 Query: 5974 NAKMTERGFAVKRSGANGSRDWHGIGLADE 5885 ++ RGF R N + GIGL E Sbjct: 743 YRQLEIRGFKKYRGNYN-KNYFDGIGLIKE 771 >ref|NP_511033.1|primase Length = 757 Score = 370 bits (950), Expect = e-102 Identities = 196/460 (42%), Positives = 274/460 (59%), Gaps = 3/460 (0%) Frame = -3 Query: 7255 HSVSRYQPNPPMKKHYHRTDSGNAERLRDRFGEIIRYCPAFKYWLVYDGCCWRKET-GEL 7079 +S+S N +K Y D+GNAER RD+F +I+R+ K + YD W+ + G + Sbjct: 295 YSISIKNQNNTARKVYGLDDTGNAERFRDKFHDIVRFSYINKGFYYYDSKVWKYDNIGAV 354 Query: 7078 MQFAIKTARDMLAEASRIEDEA-ARKELVRHAMQSENAGRLKAMIDVASNLEGMVIMPDE 6902 +DM +E + +++E+ A K ++H + + M+ A +L M ++P+E Sbjct: 355 KTLVDDVIKDMKSEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLKEAQHL--MPVLPEE 412 Query: 6901 IDSDIWKLNCRNGVVDLKTGELLPHKREYYMSKICPVEYKPSSKAPKWMEFLNTITGGSK 6722 D + LN +NG ++L+ GEL+ H R+ +KI +EY AP W EFL I G K Sbjct: 413 FDRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQEFLKDIFAGDK 472 Query: 6721 ELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLGDYARNTPSETFMAK 6542 EL+ Y+QKAVG SLSG SEQ +F+L+G G NGKS FL+ I+D+ G YA N +T M K Sbjct: 473 ELINYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIMVK 532 Query: 6541 RIEAIGN-DIARLQGARLVTAIEINEGQRLSEALIKSFTGGDRITARFLYGEYFDFQPQF 6365 + + N DIARL GAR VT E NEG RL E L+K TGGD++TAR LY F+F P+F Sbjct: 533 QQSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKAEFEFTPEF 592 Query: 6364 TPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDKQLPAKLREELPGILSWAVEGC 6185 ++ NH+P+IR IWRR+ L+PFTV IP++K DKQL KLR EL GIL+WAVEG Sbjct: 593 KIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRRELTGILNWAVEGF 652 Query: 6184 LLWQKEGLNMPDEVKKATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRYAYETWCREN 6005 L WQ+EGL MP V+ A+ Y+ EMD ++FIE+CC V EG KV+ + + Y W +EN Sbjct: 653 LKWQREGLGMPGAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYETYHEWAKEN 712 Query: 6004 GDYPLGQKLFNAKMTERGFAVKRSGANGSRDWHGIGLADE 5885 G Y + F E G + + + GI L D+ Sbjct: 713 GQYLMSSTKFG---KEIGMKFTKKKTKTANVYEGITLNDD 749 >ref|NP_680517.1|putative primase Length = 770 Score = 350 bits (897), Expect = 2e-96 Identities = 185/440 (42%), Positives = 265/440 (60%), Gaps = 8/440 (1%) Frame = -3 Query: 7225 PMKKHYHRT--DSGNAERLRDRFGEIIRYCPAFKYWLVYDGCCWRKET----GELMQFAI 7064 P KK R+ D+GNA+R D FG+ RY K W VY+G W + G ++ + Sbjct: 313 PKKKLPPRSWDDTGNAQRFVDHFGDAARYSYVDKAWYVYNGSYWELDKQGKLGSMVDIVV 372 Query: 7063 KTA-RDMLAEASRIEDEAARKELVRHAMQSENAGRLKAMIDVASNLEGMVIMPDEIDSDI 6887 R+ + A ++ E A+K+ + QS + KAM + + + +MP+E D D Sbjct: 373 DDMKREKIVIADGMDPEEAKKKWSKFLKQSRSNSAKKAMTEQLRHR--LAVMPEEFDRDK 430 Query: 6886 WKLNCRNGVVDLKTGELLPHKREYYMSKICPVEYKPSSKAPKWMEFLNTITGGSKELVRY 6707 LN NG VDL GEL H + SK VEY + +P+W +FL+ I +EL+ Y Sbjct: 431 ILLNTINGYVDLSDGELHDHDVKKMFSKETGVEYTDTVDSPEWRQFLDQIFDHDEELIDY 490 Query: 6706 LQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLGDYARNTPSETFMAKRIEAI 6527 LQKA+G SL+G EQ +F+LYG G NGKS F++T+ + G YA++ +++ M K+ ++ Sbjct: 491 LQKAIGYSLTGSTEEQVMFILYGNGRNGKSVFMDTLKHVAGSYAKSMSAKSIMIKQSDSA 550 Query: 6526 GN-DIARLQGARLVTAIEINEGQRLSEALIKSFTGGDRITARFLYGEYFDFQPQFTPFLV 6350 N DIARL+GARLVTA E NEG RL E L+K TGGD +TARFLYG F+++P+F +L Sbjct: 551 ANSDIARLKGARLVTASEPNEGVRLDEGLVKELTGGDMVTARFLYGSEFEYKPEFKLWLA 610 Query: 6349 VNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDKQLPAKLREELPGILSWAVEGCLLWQK 6170 NH+P+IR T IWRR+ LIPF V IPE+K DK+L KL E GIL+WAV+G L WQ+ Sbjct: 611 TNHKPIIRGTDDGIWRRLMLIPFNVQIPENKVDKRLAYKLERESVGILNWAVDGALKWQR 670 Query: 6169 EGLNMPDEVKKATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRYAYETWCRENGDYPL 5990 EGL P V+ A++ YR EMDT F+ +CC + + + AY++W NG+Y + Sbjct: 671 EGLKAPASVQAASKSYRAEMDTLELFVRDCCDLRPDYQAPAGELFKAYQSWAESNGEYKM 730 Query: 5989 GQKLFNAKMTERGFAVKRSG 5930 ++ F A+M ++ + K SG Sbjct: 731 RKQKFGAEMKQKFMSKKNSG 750 >ref|NP_050131.1|putative DNA-polymerase or DNA-primase Length = 771 Score = 291 bits (746), Expect = 6e-79 Identities = 158/442 (35%), Positives = 248/442 (56%), Gaps = 7/442 (1%) Frame = -3 Query: 7198 DSGNAERLRDRFGEIIRYCPAFKYWLVYDGCCWRKETGELMQFAI-KTARDMLAEASRIE 7022 D G A+R D F I Y + W VY+G W+++ L++ A K ++ E I Sbjct: 323 DMGMAQRFLDMFPHSIIYSMVDETWYVYNGSYWKQDNQGLIEKAADKVINNLKNEKHVIP 382 Query: 7021 DEAARKELVRHAMQSENAGRLKAM-IDVASNLEGMV-IMPDEIDSDIWKLNCRNGVVDLK 6848 ++ + + + E R ++ +++ + ++ +V ++ ++ D + LN +G +DL Sbjct: 383 EDVDEDDYKKAWKKFEKRERSRSSKVNMVNEIKHLVPVLHNQWDQEHMLLNTPSGYIDLT 442 Query: 6847 TGELLPHKREYYMSKICPVEYKPSSKAPKWMEFLNTITGGSKELVRYLQKAVGSSLSGDI 6668 G L HK ++ V++ + P W++FLN +EL+ ++QK +G SL+G Sbjct: 443 NGTLHNHKYNKMFTQETGVDFSENVDCPLWIKFLNQTFQNDQELIHFVQKIIGYSLTGSN 502 Query: 6667 SEQALFVLYGTGANGKSTFLNTISDLLGDYARNTPSETFMAKRI---EAIGNDIARLQGA 6497 +EQ +F+LYG G NGKS LN + + G YA+ + T M KRI + +DIARL+GA Sbjct: 503 AEQKMFILYGNGRNGKSVLLNIVKYIFGSYAKTMNATTIMQKRIGSSQGATSDIARLEGA 562 Query: 6496 RLVTAIEINEGQRLSEALIKSFTGGDRITARFLYGEYFDFQPQFTPFLVVNHRPVIRDTS 6317 RLV + E NEG RL E+L+K TGGD + AR+ YG+ F+F P F F+ NH+P I T Sbjct: 563 RLVVSSEANEGDRLDESLVKQMTGGDTLVARYQYGKDFEFDPVFKLFMATNHKPKIYGTD 622 Query: 6316 HSIWRRIKLIPFTVTIPEDKKDKQLPAKLREELPGILSWAVEGCLLWQKEGLNMPDEVKK 6137 IWRR+ +IPFT T+ ++ DK+L KL+ E GIL WA+EG ++WQ EGLN PD ++ Sbjct: 623 EGIWRRLVIIPFTHTVKKENVDKKLEDKLKAESMGILKWAIEGAMMWQSEGLNPPDVIQN 682 Query: 6136 ATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRYAYETWCRENGDYP-LGQKLFNAKMT 5960 A YR+EMD +FI+ECC+ + KV + AY+ W E ++ + F ++T Sbjct: 683 AGNEYRKEMDVIEAFIDECCVTNDSYKVKLPTYLDAYKNWANETNNWEGMNNTKFGKEIT 742 Query: 5959 ERGFAVKRSGANGSRDWHGIGL 5894 +R +R N + GI L Sbjct: 743 KR---FERKRLNTGNYYLGIDL 761 >ref|NP_958698.1|Bbp29 Length = 854 Score = 259 bits (661), Expect = 4e-69 Identities = 145/440 (32%), Positives = 236/440 (53%), Gaps = 12/440 (2%) Frame = -3 Query: 7228 PPMKKHYHRTDSGNAERLRDRFGEIIRYCPAFKYWLVYDGCCWRKETG-ELMQFAIKTAR 7052 P K+ T+ GNAER+ D +G+ + Y P W + G WR+ G EL A +T R Sbjct: 390 PFNKQRRQMTEFGNAERMLDHYGDGLMYVPEIDGWFTWTGIYWRRAAGVELEHLAKETIR 449 Query: 7051 DMLAEASRIEDEAARKELVRHAMQSENAGRLKAMIDVASNLEGMVIMPDEIDSDIWKLNC 6872 + EA IE +A R E + S+ A ++ M+ +A + +V+ ++D L Sbjct: 450 ALPDEAKAIESDAERAEFFKFCAVSQRAVMVRNMVSLAQSDPRVVVGVADLDKAPHLLGV 509 Query: 6871 RNGVVDLKTGELLPHKREYYMSKICPVEYKPSSKAPKWMEFLNTITGGSKELVRYLQKAV 6692 NGVVDL TG+LLP + Y ++ I EY ++ P + + + + G +++ + Q+ + Sbjct: 510 GNGVVDLTTGKLLPPDQAYRVTTITATEYDAAATCPLFEQTVADVFFGDADMIGFFQRLI 569 Query: 6691 GSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLGDYARNTPSETFMAK-----RIEAI 6527 G SL +E L + YG+G+NGKST L I D+LG++A+ ++TF++ + Sbjct: 570 GYSLMAQPTEDVLAIPYGSGSNGKSTVLGAIRDVLGEHAKMASADTFLSSGAAGATAGSA 629 Query: 6526 GNDIARLQGARLVTAIEINEGQRLSEALIKSFTGGDRITARFLYGE-YFDFQPQFTPFLV 6350 D+ RL+GAR V E +EG L E LIKS TGG+ + AR LY + + P + F+ Sbjct: 630 REDVLRLRGARFVYVSEPDEGSELREGLIKSMTGGEPLPARGLYSKTTVEVAPTWVAFMP 689 Query: 6349 VNHRPVIRDTSHSIWRRIKLIPFTVTIPED---KKDKQLPAKLREELPGILSWAVEGCLL 6179 NHRP+++ H+IWRR+ +PFT +D KD KL E GIL+W V G L Sbjct: 690 TNHRPIVKGDDHAIWRRLLPVPFTRNFDQDLTLTKDPDRAEKLAAEAAGILAWCVRGALA 749 Query: 6178 WQKEGLNMPDEVKKATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRYAYETWCRENGD 5999 +Q++GL P V++A + Y+ +MD + +++ECC V SN + ++E + + G+ Sbjct: 750 YQRQGLRPPGAVRQARDDYKSDMDLLAEWLDECCEVGPAYVESNARLWASWEAFAKARGE 809 Query: 5998 --YPLGQKLFNAKMTERGFA 5945 + K ++ +GF+ Sbjct: 810 LRFIASAKSLGRRLDSKGFS 829 >ref|NP_996591.1|primase Length = 854 Score = 259 bits (661), Expect = 4e-69 Identities = 145/440 (32%), Positives = 236/440 (53%), Gaps = 12/440 (2%) Frame = -3 Query: 7228 PPMKKHYHRTDSGNAERLRDRFGEIIRYCPAFKYWLVYDGCCWRKETG-ELMQFAIKTAR 7052 P K+ T+ GNAER+ D +G+ + Y P W + G WR+ G EL A +T R Sbjct: 390 PFNKQRRQMTEFGNAERMLDHYGDGLMYVPEIDGWFTWTGIYWRRAAGVELEHLAKETIR 449 Query: 7051 DMLAEASRIEDEAARKELVRHAMQSENAGRLKAMIDVASNLEGMVIMPDEIDSDIWKLNC 6872 + EA IE +A R E + S+ A ++ M+ +A + +V+ ++D L Sbjct: 450 ALPDEAKAIESDAERAEFFKFCAVSQRAVMVRNMVSLAQSDPRVVVGVADLDKAPHLLGV 509 Query: 6871 RNGVVDLKTGELLPHKREYYMSKICPVEYKPSSKAPKWMEFLNTITGGSKELVRYLQKAV 6692 NGVVDL TG+LLP + Y ++ I EY ++ P + + + + G +++ + Q+ + Sbjct: 510 GNGVVDLTTGKLLPPDQAYRVTTITATEYDAAATCPLFEQTVADVFFGDADMIGFFQRLI 569 Query: 6691 GSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLGDYARNTPSETFMAK-----RIEAI 6527 G SL +E L + YG+G+NGKST L I D+LG++A+ ++TF++ + Sbjct: 570 GYSLMAQPTEDVLAIPYGSGSNGKSTVLGAIRDVLGEHAKMASADTFLSSGAAGATAGSA 629 Query: 6526 GNDIARLQGARLVTAIEINEGQRLSEALIKSFTGGDRITARFLYGE-YFDFQPQFTPFLV 6350 D+ RL+GAR V E +EG L E LIKS TGG+ + AR LY + + P + F+ Sbjct: 630 REDVLRLRGARFVYVSEPDEGSELREGLIKSMTGGEPLPARGLYSKTTVEVAPTWVAFMP 689 Query: 6349 VNHRPVIRDTSHSIWRRIKLIPFTVTIPED---KKDKQLPAKLREELPGILSWAVEGCLL 6179 NHRP+++ H+IWRR+ +PFT +D KD KL E GIL+W V G L Sbjct: 690 TNHRPIVKGDDHAIWRRLLPVPFTRNFDQDLTLTKDPDRAEKLAAEAAGILAWCVRGALA 749 Query: 6178 WQKEGLNMPDEVKKATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRYAYETWCRENGD 5999 +Q++GL P V++A + Y+ +MD + +++ECC V SN + ++E + + G+ Sbjct: 750 YQRQGLRPPGAVRQARDDYKSDMDLLAEWLDECCEVGPAYVESNARLWASWEAFAKARGE 809 Query: 5998 --YPLGQKLFNAKMTERGFA 5945 + K ++ +GF+ Sbjct: 810 LRFIASAKSLGRRLDSKGFS 829 >ref|NP_996639.1|primase Length = 854 Score = 259 bits (661), Expect = 4e-69 Identities = 145/440 (32%), Positives = 236/440 (53%), Gaps = 12/440 (2%) Frame = -3 Query: 7228 PPMKKHYHRTDSGNAERLRDRFGEIIRYCPAFKYWLVYDGCCWRKETG-ELMQFAIKTAR 7052 P K+ T+ GNAER+ D +G+ + Y P W + G WR+ G EL A +T R Sbjct: 390 PFNKQRRQMTEFGNAERMLDHYGDGLMYVPEIDGWFTWTGIYWRRAAGVELEHLAKETIR 449 Query: 7051 DMLAEASRIEDEAARKELVRHAMQSENAGRLKAMIDVASNLEGMVIMPDEIDSDIWKLNC 6872 + EA IE +A R E + S+ A ++ M+ +A + +V+ ++D L Sbjct: 450 ALPDEAKAIESDAERAEFFKFCAVSQRAVMVRNMVSLAQSDPRVVVGVADLDKAPHLLGV 509 Query: 6871 RNGVVDLKTGELLPHKREYYMSKICPVEYKPSSKAPKWMEFLNTITGGSKELVRYLQKAV 6692 NGVVDL TG+LLP + Y ++ I EY ++ P + + + + G +++ + Q+ + Sbjct: 510 GNGVVDLTTGKLLPPDQAYRVTTITATEYDAAATCPLFEQTVADVFFGDADMIGFFQRLI 569 Query: 6691 GSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLGDYARNTPSETFMAK-----RIEAI 6527 G SL +E L + YG+G+NGKST L I D+LG++A+ ++TF++ + Sbjct: 570 GYSLMAQPTEDVLAIPYGSGSNGKSTVLGAIRDVLGEHAKMASADTFLSSGAAGATAGSA 629 Query: 6526 GNDIARLQGARLVTAIEINEGQRLSEALIKSFTGGDRITARFLYGE-YFDFQPQFTPFLV 6350 D+ RL+GAR V E +EG L E LIKS TGG+ + AR LY + + P + F+ Sbjct: 630 REDVLRLRGARFVYVSEPDEGSELREGLIKSMTGGEPLPARGLYSKTTVEVAPTWVAFMP 689 Query: 6349 VNHRPVIRDTSHSIWRRIKLIPFTVTIPED---KKDKQLPAKLREELPGILSWAVEGCLL 6179 NHRP+++ H+IWRR+ +PFT +D KD KL E GIL+W V G L Sbjct: 690 TNHRPIVKGDDHAIWRRLLPVPFTRNFDQDLTLTKDPDRAEKLAAEAAGILAWCVRGALA 749 Query: 6178 WQKEGLNMPDEVKKATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRYAYETWCRENGD 5999 +Q++GL P V++A + Y+ +MD + +++ECC V SN + ++E + + G+ Sbjct: 750 YQRQGLRPPGAVRQARDDYKSDMDLLAEWLDECCEVGPAYVESNARLWASWEAFAKARGE 809 Query: 5998 --YPLGQKLFNAKMTERGFA 5945 + K ++ +GF+ Sbjct: 810 LRFIASAKSLGRRLDSKGFS 829 >ref|YP_024966.1|putative primase Length = 888 Score = 256 bits (655), Expect = 2e-68 Identities = 159/492 (32%), Positives = 250/492 (50%), Gaps = 24/492 (4%) Frame = -3 Query: 7288 PLDEAEVRKI----------AHSVSRYQPNPPMKKHYHRTDSGNAERLRDRFGEIIRYCP 7139 PLD+ EV + A R + P K + RT+ GNAER+ DRFG + Y P Sbjct: 388 PLDDDEVIFVQSDPPAKPPRASKKKRDGDDEPPKGYRARTEFGNAERMLDRFGAGLMYVP 447 Query: 7138 AFKYWLVYDGCCWRKETG-ELMQFAIKTARDMLAEASRIEDEAARKELVRHAMQSENAGR 6962 + W V+ G WR+ EL A T R ++ EA ++ R E + + A Sbjct: 448 ELEAWYVWTGVYWRRAVQVELENMAKDTIRALVDEAEELQTAEERIEFFKFCAACQKAAM 507 Query: 6961 LKAMIDVASNLEGMVIMPDEIDSDIWKLNCRNGVVDLKTGELLPHKREYYMSKICPVEYK 6782 + MI +A++ +V+ E+D L NG VDL+TG LLP +E+ ++ + PVEY Sbjct: 508 VSNMIRLAASDPRVVVPVTELDKHTHLLGVGNGAVDLRTGALLPPGKEHRITVVTPVEYD 567 Query: 6781 PSSKAPKWMEFLNTITGGSKELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNT 6602 P + + + + + E V + Q+ VG +L G E L + +GTG+NGKST L Sbjct: 568 PRAAGKLFEQTVRDVFSDDAEQVEFFQRLVGYALLGTPREDLLIIPHGTGSNGKSTVLGK 627 Query: 6601 ISDLLGDYARNTPSETFMA------KRIEAIGNDIARLQGARLVTAIEINEGQRLSEALI 6440 I + LG +A++ +ETF++ A D+ RL+GAR V E +EG L E LI Sbjct: 628 IREALGAHAKSASAETFLSASGGPGAAAGAAREDLLRLRGARFVYVGEPDEGSELREGLI 687 Query: 6439 KSFTGGDRITARFLYGE-YFDFQPQFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPE 6263 K+ TGGD I AR L+ + + P + F+ NH+P+++ H+IWRR+ L+PF + Sbjct: 688 KAMTGGDPIPARGLWSKTTIEVVPTWVAFMPTNHKPIVKGDDHAIWRRLMLVPFERNFDK 747 Query: 6262 D---KKDKQLPAKLREELPGILSWAVEGCLLWQKEGLNMPDEVKKATEGYREEMDTFSSF 6092 D KKD +L ELPG+L+W V G L +Q+ GL V A + Y+ +MD + + Sbjct: 748 DPTIKKDPARAERLAAELPGVLAWCVRGALAYQQHGLRPTSSVAAARDAYKADMDLLADW 807 Query: 6091 IEECCIVEEGRKVSNRSIRYAYETWCRENGD--YPLGQKLFNAKMTERGFA-VKRSGANG 5921 I+E C V +N + ++ + + G+ + + ++ RGF+ +K + Sbjct: 808 IDERCRVGRDAASTNEDLWRSWRAFAEQRGELRFIANSRALARRIAARGFSQIKNTYGIR 867 Query: 5920 SRDWHGIGLADE 5885 R + GI + DE Sbjct: 868 GRGFAGICVNDE 879 >ref|NP_047955.2|gp9a Length = 805 Score = 243 bits (620), Expect = 2e-64 Identities = 148/436 (33%), Positives = 219/436 (50%), Gaps = 10/436 (2%) Frame = -3 Query: 7210 YHRTDSGNAERLRDRFGEIIRYCPAFKYWLVYDGCCWRKETGELMQFAIKTARDMLAEAS 7031 Y +D+ NA L I+Y Y+ V+DG W K + Q Sbjct: 360 YGESDAMNAHALVAWTDGRIKYASGLGYF-VWDGVTWVKSATRVRQ-------------- 404 Query: 7030 RIEDEAARKELVRHAMQSENAG-----RLKAMIDVASNLEGMVIMPDEIDSDIWKLNCRN 6866 E A LV E+ G R+ A++ ++ + + +E D++ L+ N Sbjct: 405 --EIHAMGAALVLAGCLPESRGFTMTTRIDALMTELRSVPSVHVEAEEFDANAHLLSFAN 462 Query: 6865 GVVDLKTGELLPHKREYYMSKICPVEYKPSSKAPKWMEFLNTITGGSKELVRYLQKAVGS 6686 GVVDL+TG+L H + ++ P+EY P+++AP+W +FL I + +LV Y+++ VG Sbjct: 463 GVVDLRTGKLRAHDKGDMLTVSLPIEYDPNAQAPRWEQFLQEIFPNNADLVGYMRRLVGY 522 Query: 6685 SLSGDISEQALFVLYGTGANGKSTFLNTISDLLGDYARNTPSETFMAK-RIEAIGNDIAR 6509 ++G+ SEQ VL+G GANGKS F T++D+ G + TP TF K I ND+A Sbjct: 523 GITGNTSEQCFAVLWGKGANGKSVFTETLTDVFGRITKTTPFATFEDKGNGGGIPNDLAA 582 Query: 6508 LQGARLVTAIEINEGQRLSEALIKSFTGGDRITARFLYGEYFDFQPQFTPFLVVNHRPVI 6329 L+G+RLV A E G+ +SEA++K TG D++TARFL E+F F P F L NH+P Sbjct: 583 LRGSRLVMASEGESGKPMSEAVLKRVTGKDKVTARFLRQEFFTFAPTFLIMLATNHKPKF 642 Query: 6328 RDTSHSIWRRIKLIPFTVTIPEDKKDKQLPAKLREELPGILSWAVEGCLLWQKEGLNMPD 6149 + +WRR+KLIPF +++D L KLR E GI++WAV G + W GL P+ Sbjct: 643 KSQDEGLWRRVKLIPFVRYFAPEERDYDLDRKLRAESAGIVAWAVRGAVEWYANGLGDPE 702 Query: 6148 EVKKATEGYREEMDTFSSFIEECC-IVEEGRKVSNRSIRYAYETWCRENG---DYPLGQK 5981 + AT YR D + F ++ VS +Y WC G +K Sbjct: 703 SISTATREYRATSDALAGFFPGVLDAADDSAIVSGADAYNSYRDWCEAEGLKSTEVWSRK 762 Query: 5980 LFNAKMTERGFAVKRS 5933 F M ERG K++ Sbjct: 763 AFYGAMEERGIGKKKT 778 >ref|NP_569803.1|hypothetical protein Length = 867 Score = 240 bits (612), Expect = 2e-63 Identities = 143/427 (33%), Positives = 231/427 (54%), Gaps = 4/427 (0%) Frame = -3 Query: 7201 TDSGNAERLRDRFGEIIRYCPAFKYWLVYDGCCWRK--ETGELMQFAIKTARDMLAEASR 7028 TD+GNA+ L + +R+CP WLV+ G W+ + GE + AI+ + + + Sbjct: 410 TDTGNADLLVRACSDRLRWCPESGKWLVWKGTRWQPSPDGGEAIMAAIEVVQSI-----K 464 Query: 7027 IEDEAARKELVRHAMQSENAGRLKAMIDVASNLEGMVIMPDEIDSDIWKLNCRNGVVDLK 6848 +ED K +H M+S L M+ +A GM + ++D+D + LN +GVV+LK Sbjct: 465 VED--GDKAGGQHKMRSLQRRSLDNMVALAKCRPGMRVSLADLDADPYALNTPSGVVNLK 522 Query: 6847 TGELLPHKREYYMSKICPVEYKPSSKAPKWMEFLNTITGGSKELVRYLQKAVGSSLSGDI 6668 TGEL PH+ E + +++ Y+ AP+W FL+ GG K +V Y+Q+ G + G++ Sbjct: 523 TGELTPHRPEGWHTRVTGAGYERDGAAPRWWAFLHRTFGGDKSMVEYVQRLAGYAAIGEV 582 Query: 6667 SEQALFVLYGTGANGKSTFLNTISDLLGDYARNTPSETFMAKRIEAIGNDIARLQGARLV 6488 + L L+G G+NGKS ++ +S +LGDYA P +A R E +IARL GARLV Sbjct: 583 THHVLPFLFGAGSNGKSVLMDVLSAVLGDYAITAPGNFLLAGR-ERHETEIARLHGARLV 641 Query: 6487 TAIEINEGQRLSEALIKSFTGGDRITARFLYGEYFDFQPQFTPFLVVNHRPVIRDTSHSI 6308 E+N + EA +K TGGD ++ RF+ ++FDF P T FL+ NH+P ++ S Sbjct: 642 VCSEVNADSKFDEAKVKLLTGGDVLSGRFMRQDFFDFVPSHTLFLMGNHQPDVKAGGTSF 701 Query: 6307 WRRIKLIPFTVTIPEDKKDKQLPAKL-REELPGILSWAVEGCLLWQKEGLNMPDEVKKAT 6131 +RR +LIPF +PE ++ + L +L EE IL+W +G G+ P V AT Sbjct: 702 FRRFRLIPFEHIVPERERVEGLAHQLVAEEGDAILAWIADGARQVLDGGMREPASVLAAT 761 Query: 6130 EGYREEMDT-FSSFIEECCIVEEGRKVSNRSIRYAYETWCRENGDYPLGQKLFNAKMTER 5954 Y+++ T + F++ECC + EG + ++ Y W +G+ + F +++ Sbjct: 762 AQYQDDTRTGVARFLDECCTIGEG-EAEVGAVHQCYIAWAIAHGEPLVDTAKFGRELSGN 820 Query: 5953 GFAVKRS 5933 A +R+ Sbjct: 821 QVARRRT 827 >ref|NP_813724.1|gp9a Length = 808 Score = 237 bits (604), Expect = 2e-62 Identities = 149/436 (34%), Positives = 213/436 (48%), Gaps = 10/436 (2%) Frame = -3 Query: 7210 YHRTDSGNAERLRDRFGEIIRYCPAFKYWLVYDGCCWRKETGELMQFAIKTARDMLAEAS 7031 Y +D+ NA L I+Y P Y+ V+DG W K + Q Sbjct: 363 YGESDAMNAHALVAWTDGRIKYAPGLGYF-VWDGVTWVKSATRVRQ-------------- 407 Query: 7030 RIEDEAARKELVRHAMQSENAG-----RLKAMIDVASNLEGMVIMPDEIDSDIWKLNCRN 6866 E A LV E+ G R+ A++ ++ + + E D+ L+ RN Sbjct: 408 --EIHAMGAALVLAGCLPESRGFTMTTRIDALMTELRSVPSVHVDAGEFDAKPHLLSFRN 465 Query: 6865 GVVDLKTGELLPHKREYYMSKICPVEYKPSSKAPKWMEFLNTITGGSKELVRYLQKAVGS 6686 GVVDL+TG + H + ++ P +Y P++KAP+W +FL I EL Y+Q+ G Sbjct: 466 GVVDLRTGNIRAHDKNDMLTVSMPSDYDPTAKAPRWEQFLREIFPDHPELAEYMQRLTGY 525 Query: 6685 SLSGDISEQALFVLYGTGANGKSTFLNTISDLLGDYARNTPSETFMAK-RIEAIGNDIAR 6509 ++G+ SEQ VL+G G+NGKS + T +DL + TP TF K I ND+A Sbjct: 526 GITGNTSEQCFAVLWGKGSNGKSVYTETCTDLFAPITKTTPFATFEDKGNGGGIPNDLAA 585 Query: 6508 LQGARLVTAIEINEGQRLSEALIKSFTGGDRITARFLYGEYFDFQPQFTPFLVVNHRPVI 6329 L+ ARLV A E G+ +SEA++K TG D++TARFL E+F F P+F L NH+P Sbjct: 586 LRDARLVMASEGESGKPMSEAVLKRVTGKDKVTARFLRQEFFTFTPKFLILLATNHKPKF 645 Query: 6328 RDTSHSIWRRIKLIPFTVTIPEDKKDKQLPAKLREELPGILSWAVEGCLLWQKEGLNMPD 6149 + +WRR+KLIPFT +++D L KLR E GI++WAV G + W GL P+ Sbjct: 646 KSQDEGLWRRVKLIPFTRYFAPEERDYDLDRKLRAEAAGIIAWAVRGAVDWYANGLRDPE 705 Query: 6148 EVKKATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRY-AYETWCRENG---DYPLGQK 5981 + KAT YR D + F + V + Y AY WC G +K Sbjct: 706 CISKATREYRATSDALAGFFPGVLEAADDTHVLPGADAYTAYTDWCEAEGLQRKEVWSRK 765 Query: 5980 LFNAKMTERGFAVKRS 5933 F M ER K++ Sbjct: 766 AFYGAMEERNVMKKKT 781 >ref|YP_024889.1|putative primase Length = 919 Score = 230 bits (586), Expect = 2e-60 Identities = 136/410 (33%), Positives = 218/410 (53%), Gaps = 16/410 (3%) Frame = -3 Query: 7267 RKIAH-----SVSRYQPNPPMKKHYHRTDSGNAERLRDRFGEIIRYCPAFKYWLVYDGCC 7103 RKI H S + QP P H T+ GN RL D++G+ + Y + W +DG Sbjct: 433 RKITHCRAMLSAASSQPLTP-GAHRECTEFGNVSRLMDKYGDTLMYVSEIEQWYQWDGMR 491 Query: 7102 WRKETGELMQF-AIKTARDMLAEASRIEDEAARKELVRHAMQSENAGRLKAMIDVASNLE 6926 W T E +QF A +T + EA E+E R L + A S+ +K ++ A Sbjct: 492 WNAATPEQLQFLATQTIYSIAQEARDEENEEVRVRLAQWARDSQKTAMVKNIVIGARAEP 551 Query: 6925 GMVIMPDEIDSDIWKLNCRNGVVDLKTGELLPHKREYYMSKICPVEYKPSSKAPKWMEFL 6746 + +D+D+ + N ++DL+TG L R +++ V+Y P++ AP + + + Sbjct: 552 RVFARAANLDADVRYIGAPNCIIDLQTGAALAPDRNARITQYTAVQYNPAADAPCFKQTI 611 Query: 6745 NTITGGSKELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLGDYARNT 6566 + EL+ + ++ +G +L G+ + L + YG GANGKST +N I +LGDY R Sbjct: 612 REAFFDNIELIVFFKRLMGYALLGNPKQSWLVIPYGHGANGKSTIMNAIQRVLGDYCRTA 671 Query: 6565 PSETFM---AKRIEAIG---NDIARLQGARLVTAIEINEGQRLSEALIKSFTGGDRITAR 6404 S+TF A R + G D+ RL+ R++ E+ E L EA++KS TG D I AR Sbjct: 672 SSDTFTSSEASRSSSAGGPREDLVRLRSTRMLLISEVEENSHLREAIVKSLTGDDTIVAR 731 Query: 6403 FLYGE-YFDFQPQFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPED---KKDKQLPA 6236 + + +++P+F P + NH+PVI+ + + IWRRI +IPF ED +D P Sbjct: 732 GVQAKASVEYKPRFVPIMSTNHKPVIKGSDNGIWRRIMMIPFERNFREDPNIPEDVDRPE 791 Query: 6235 KLREELPGILSWAVEGCLLWQKEGLNMPDEVKKATEGYREEMDTFSSFIE 6086 K+ E G+L W VEG + +Q+ G+ +P +++AT+ YR++MD S +IE Sbjct: 792 KIAAESEGVLRWLVEGAVEYQQFGVTVPHIIREATDEYRKDMDLLSGWIE 841 >ref|NP_795676.1|putative DNA primase Length = 794 Score = 103 bits (256), Expect = 4e-22 Identities = 86/343 (25%), Positives = 147/343 (42%), Gaps = 5/343 (1%) Frame = -3 Query: 6898 DSDIWKLNCRNGVVDLKTGEL-LPHKREYYMSKICPVEYKPSSKAPKWMEFLNTITGGSK 6722 +SD+ K+ NGV DL+ E + PV Y P + + FL G Sbjct: 458 ESDLNKIVLANGVYDLRDNSFKTKFDPEVHARSSHPVVYDPEATCETFEGFLRETVGA-- 515 Query: 6721 ELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLG-DYARNTPSETFMA 6545 E + ++ + G + + + Q + +YG+G GKST +N + +++G D + M Sbjct: 516 ENIDFIFEWFGYNFYREYTIQKMLFIYGSGGTGKSTLINILREMIGADNYSAVTLQYLMQ 575 Query: 6544 KRIEAIGNDIARLQGARLVTAIEINEGQRLSEALIKSFTGGDRITARFLYGEYFDFQPQF 6365 +R IG L + A +K TG D I A E +F Sbjct: 576 ERFAKIG-----LYRKTANFDTDAKPQYLADGATLKMLTGEDTIHADRKNKEPINFYNYA 630 Query: 6364 TPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDKQLPAKLREELPGILSWAVEGC 6185 +N P +RD S + RR+ ++ + ++ K K K+ E+PGI + A+EG Sbjct: 631 KLSFAMNELPPMRDFSGGLKRRMMILEMDKVLTQEVKAKYPLDKIMSEVPGIFNRAMEGL 690 Query: 6184 L-LWQKEGLNMPDEVKKATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRYAYETWCRE 6008 K ++ ++ + E + + D + F+E+ C + E KV R + AY+ +C++ Sbjct: 691 RKALSKRDFSISASMRSSVEKWEKGNDVVAMFLEDECDLSEDFKVPVRDVYPAYKFYCQD 750 Query: 6007 NGDYPLGQKLFNAKMTERGFAVKRSGANGS--RDWHGIGLADE 5885 +G PL + F +M E F K + G R W G + E Sbjct: 751 SGYKPLARNSFTQRMNELNFENKNAKMGGKTVRCWIGFRIKGE 793 >ref|NP_818646.1|gp108 Length = 916 Score = 94.0 bits (232), Expect = 2e-19 Identities = 86/314 (27%), Positives = 146/314 (46%), Gaps = 16/314 (5%) Frame = -3 Query: 6907 DEIDSDIWKLNCRNGVVDLK-TG-ELLPHKREYYMSKICPVEYKPSSKAPK-----WMEF 6749 +EID+ L NGVV+L TG L + E Y++ V + + P W E+ Sbjct: 528 NEIDARPDLLAVANGVVELNPTGARLRDAEPEDYLTLNTGVPWLHPKEIPNTGQKLWQEY 587 Query: 6748 LNTITGGSKELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLGDYARN 6569 L+ R +Q +G +L G + L + G GKS + I+++LGDYA+ Sbjct: 588 LDKFLP-DPSYRRDVQIILGHALIGSNPHKKLIIFKGAANTGKSVMITMINEVLGDYAKT 646 Query: 6568 TPSETFMAKRIEAIGNDIARLQGARLVTAIEINEGQR--LSEALIKSFTGGDRITARFLY 6395 T F ++ + +A+ R+V+ +E++ +R L+ +K+ TG D I A L Sbjct: 647 TNRSLFTYHKLNPV---LAQALPKRVVSIVELSRDKRNPLTVDQMKTATGNDYIEAE-LK 702 Query: 6394 GEYFDFQ--PQFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDKQLPAKL-RE 6224 G+ P F P +V N P I ++ R+++I F V E D + A++ RE Sbjct: 703 GKNATINRVPMFLPIMVTNTVPEIEGHDKALRERLRVISFNVV--EQNPDDTIAARMRRE 760 Query: 6223 ELPGILSWAVEGCLLWQKEGLNMP--DEVKKATEGYREEMDTFSSFIEECCIVEEGRKVS 6050 +L+W +EG L+ + P D ++ T+ + +MD S F +EC ++ + Sbjct: 761 SRTAVLNWLIEGYNLYCQSERKFPENDRMRADTDEFASDMDDISLFAKEC--LKPAPNMD 818 Query: 6049 NRSIRYAYE--TWC 6014 SI +A + WC Sbjct: 819 KPSINWARDQVEWC 832 >ref|NP_818445.1|gp145 Length = 219 Score = 82.0 bits (201), Expect = 1e-15 Identities = 61/210 (29%), Positives = 89/210 (42%), Gaps = 4/210 (1%) Frame = -3 Query: 8131 PQREHKTHL*SLADSLKNYLSGSLNFLARQEVRSLEMTMMDAALKYAE----ANIPVIPL 7964 PQ E + L D+++ + + L + R + AAL YA+ A P++P Sbjct: 28 PQTEEELKLREFVDAIQRGDEAAADKLEAELNRPKPAKLGPAALWYAKRAGWAVFPLVPG 87 Query: 7963 HWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQIKKWWTKTPNANIGIPTGEKS 7784 K P +K++T D QI+KWWT+ PN NIG+PTG + Sbjct: 88 E--------------------KRPATKNGFKDATRDEAQIRKWWTENPNYNIGLPTGRAA 127 Query: 7783 DWXXXXXXXXXDETLSALEATHGKLPDTVTAVTGSGGRHYVFIYPKGRSIPNKTKFAPGL 7604 + S E G LPD V G H +Y G N+ PG+ Sbjct: 128 GFDVVDIDGPEG-MKSLAELGEGVLPDVHGKVATPRGFH---LYVAGTDDGNRAGVRPGI 183 Query: 7603 DMRSTGGLIAVAPSIHISGNRYEWLEGHSP 7514 D RSTGG + PS+ ++G +Y W+ SP Sbjct: 184 DYRSTGGFVVAVPSV-VNGKQYSWVVRPSP 212 Score = 77.4 bits (189), Expect = 2e-14 Identities = 45/124 (36%), Positives = 58/124 (46%) Frame = -1 Query: 528 KHPLYTGWYNNSTTDVEQIKKWWTKTPNANIGIPTGAKSGWXXXXXXXXXDETLSALEAT 349 K P + ++T D QI+KWWT+ PN NIG+PTG +G+ S E Sbjct: 89 KRPATKNGFKDATRDEAQIRKWWTENPNYNIGLPTGRAAGFDVVDIDGPEG-MKSLAELG 147 Query: 348 HGKLPDTVTAVTGGGGLHYIFKYSQGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQ 169 G LPD V G H Y G N+ PG D STGG +V PS+ V+ Q Sbjct: 148 EGVLPDVHGKVATPRGFHL---YVAGTDDGNRAGVRPGIDYRSTGGFVVAVPSV-VNGKQ 203 Query: 168 YQWL 157 Y W+ Sbjct: 204 YSWV 207 >ref|NP_050001.1|putative replication protein Length = 271 Score = 68.9 bits (167), Expect = 8e-12 Identities = 70/280 (25%), Positives = 112/280 (40%), Gaps = 21/280 (7%) Frame = -3 Query: 8023 MTMMDAALKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQI 7844 M M+D A+ Y VIP+ GK PL + K T+ I Sbjct: 1 MEMVDYAINYQRMGYSVIPI-----------------SKNGKTPLISFADKPPMTE-NDI 42 Query: 7843 KKWWTKTPNANIGIPTGEKSDWXXXXXXXXXDETLSALEA-THGKL-PDTVTAVTGSGGR 7670 ++ W P+ANI + T + + + L+ L H +L P T+ A+T SGGR Sbjct: 43 RRVWRDNPDANIALKTD--TFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGGR 100 Query: 7669 HYVFIYPKGRSIPNKTKFAPGLDMRSTGGLIAVAPSIHISGNRYEWLEGHSPFERIPAEA 7490 H I G+D+++ + P + S YEW HSP + EA Sbjct: 101 HIYLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITEA 160 Query: 7489 PAWLLKLMERVEVLLTPFEGSSIIAEI------------------KEGNRNSTLTSLAGT 7364 P L+K++++++ +E SS ++ +G RN+ L G Sbjct: 161 PLALIKVLQKMKPEPLSYEVSSFASDCVRSTKTTKLFESILLGFGDKGGRNNALAEFVGG 220 Query: 7363 MRARGMTEESIY-AALLAENNARCNPPLDEAEVRKIAHSV 7247 + RG+ E Y A +A NN + PL + E + S+ Sbjct: 221 LLLRGVDPEITYHLAKMANNNTQ--EPLGDKEFERTFKSM 258 Score = 51.2 bits (121), Expect = 2e-06 Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 2/214 (0%) Frame = -1 Query: 645 MMDAALKYAEANIPVIPLHWICEGGLCSCKAGKNCDSKGKHPLYTGWYNNSTTDVEQIKK 466 M+D A+ Y VIP+ GK PL + T+ I++ Sbjct: 3 MVDYAINYQRMGYSVIPI-----------------SKNGKTPLISFADKPPMTE-NDIRR 44 Query: 465 WWTKTPNANIGIPTGAKSGWXXXXXXXXXDETLSALEA-THGKL-PDTVTAVTGGGGLHY 292 W P+ANI + T + + + L+ L H +L P T+ A+T GG H Sbjct: 45 VWRDNPDANIALKTD--TFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGGRHI 102 Query: 291 IFKYSQGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTLAEAPE 112 K I G D + ++ P + S Y+W HS D ++ EAP Sbjct: 103 YLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITEAPL 162 Query: 111 WLLKLMEREEVLLTPFEGRSIVAGIRKQPKRYRL 10 L+K++++ + +E S + + K +L Sbjct: 163 ALIKVLQKMKPEPLSYEVSSFASDCVRSTKTTKL 196 >ref|NP_042036.1|DNA primase Length = 777 Score = 68.9 bits (167), Expect = 8e-12 Identities = 67/265 (25%), Positives = 114/265 (43%), Gaps = 9/265 (3%) Frame = -3 Query: 6973 NAGRLKAMIDVASNLEGMVIMPDEIDSDIWKLNCRNGVVDLKTGELLPHKREYYMSKICP 6794 ++G++ +++D +I+P + + RNGV+D + G PH ++M +C Sbjct: 388 SSGKVASVVDTLK-----LIIPQQEAPSRRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCD 442 Query: 6793 VEYKP-------SSKAPKWMEFLNTITGGSKELVRYLQKAVGSSLSGDISEQALFVLYGT 6635 V++ P + AP + +L+ GG E + A+ L+ Q + G Sbjct: 443 VDFTPPVDGETLETHAPAFWRWLDRAAGGRAEKRDVILAALFMVLANRYDWQLFLEVTGP 502 Query: 6634 GANGKSTFLNTISDLLG-DYARNTPSETFMAKRIEAIGNDIARLQGARLVTAIEINEGQR 6458 G +GKS + L G D A + ET + R + A L G L+ + E Sbjct: 503 GGSGKSIMAEIATLLAGEDNATSATIETLESPR------ERAALTGFSLI-RLPDQEKWS 555 Query: 6457 LSEALIKSFTGGDRITARFLYGEYFDFQPQFTPFLVVNHRPV-IRDTSHSIWRRIKLIPF 6281 A +K+ TGGD ++ Y + + L VN+ P+ D S + RR +I F Sbjct: 556 GDGAGLKAITGGDAVSVDPKYRDAYSTHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHF 614 Query: 6280 TVTIPEDKKDKQLPAKLREELPGIL 6206 I ++D QL K+ EL I+ Sbjct: 615 PEQIAPQERDPQLKDKITRELAVIV 639 >ref|NP_795618.1|hypothetical protein Length = 267 Score = 68.2 bits (165), Expect = 1e-11 Identities = 70/268 (26%), Positives = 108/268 (40%), Gaps = 21/268 (7%) Frame = -3 Query: 8017 MMDAALKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQIKK 7838 M+D A+ Y + VIP+ GK PL K + T+ E ++ Sbjct: 1 MIDYAIYYQQKGFSVIPI-----------------SKDGKKPLVAFADKPAFTEHE-LRL 42 Query: 7837 WWTKTPNANIGIPTGEKSDWXXXXXXXXXDETLSAL-EATHGKL-PDTVTAVTGSGGRHY 7664 W P+ANI + T + + + L L E H +L P T+ A T SGGRH Sbjct: 43 IWKDNPDANIALKTD--TFFVIDIDVHNDVDGLKNLREWEHARLIPKTLQATTPSGGRHI 100 Query: 7663 VFIYPKGRSIPNKTKFAPGLDMRS-TGGLIAVAPSIHISGNRYEWLEGHSPFERIPAEAP 7487 PKG S+ F G+D+++ + V PS + G YEW HSP EAP Sbjct: 101 YLKKPKGVSMAQNIGFIDGVDLKAHVNNYVLVPPSNNAKG-MYEWDMVHSPTSGEMTEAP 159 Query: 7486 AWLLKLMERVEVLLT---------PFEGSSIIAEIKE---------GNRNSTLTSLAGTM 7361 L+ ++ ++ ++GS+ A++ E G RN+ L G + Sbjct: 160 LELINVLRELKPAYEYDASSFTSGDYQGSNKTAKLFETIVLGFGDTGGRNNALAEFVGGL 219 Query: 7360 RARGMTEESIYAALLAENNARCNPPLDE 7277 R + E Y N+ +P D+ Sbjct: 220 LLRNVDVEIAYTLAKMANHKTADPLSDK 247 Score = 47.8 bits (112), Expect = 2e-05 Identities = 51/204 (25%), Positives = 80/204 (39%), Gaps = 2/204 (0%) Frame = -1 Query: 645 MMDAALKYAEANIPVIPLHWICEGGLCSCKAGKNCDSKGKHPLYTGWYNNSTTDVEQIKK 466 M+D A+ Y + VIP+ GK PL + T+ E ++ Sbjct: 1 MIDYAIYYQQKGFSVIPI-----------------SKDGKKPLVAFADKPAFTEHE-LRL 42 Query: 465 WWTKTPNANIGIPTGAKSGWXXXXXXXXXDETLSAL-EATHGKL-PDTVTAVTGGGGLHY 292 W P+ANI + T + + + L L E H +L P T+ A T GG H Sbjct: 43 IWKDNPDANIALKTD--TFFVIDIDVHNDVDGLKNLREWEHARLIPKTLQATTPSGGRHI 100 Query: 291 IFKYSQGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTLAEAPE 112 K +G S+ F G D + V+ P + + Y+W HS + EAP Sbjct: 101 YLKKPKGVSMAQNIGFIDGVDLKAHVNNYVLVPPSNNAKGMYEWDMVHSPTSGEMTEAPL 160 Query: 111 WLLKLMEREEVLLTPFEGRSIVAG 40 L+ ++ RE ++ S +G Sbjct: 161 ELINVL-RELKPAYEYDASSFTSG 183 >ref|NP_795448.1|hypothetical protein Length = 267 Score = 68.2 bits (165), Expect = 1e-11 Identities = 70/268 (26%), Positives = 108/268 (40%), Gaps = 21/268 (7%) Frame = -3 Query: 8017 MMDAALKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQIKK 7838 M+D A+ Y + VIP+ GK PL K + T+ E ++ Sbjct: 1 MIDYAIYYQQKGFSVIPI-----------------SKDGKKPLVAFADKPAFTEHE-LRL 42 Query: 7837 WWTKTPNANIGIPTGEKSDWXXXXXXXXXDETLSAL-EATHGKL-PDTVTAVTGSGGRHY 7664 W P+ANI + T + + + L L E H +L P T+ A T SGGRH Sbjct: 43 IWKDNPDANIALKTD--TFFVIDIDVHNDVDGLKNLREWEHARLIPKTLQATTPSGGRHI 100 Query: 7663 VFIYPKGRSIPNKTKFAPGLDMRS-TGGLIAVAPSIHISGNRYEWLEGHSPFERIPAEAP 7487 PKG S+ F G+D+++ + V PS + G YEW HSP EAP Sbjct: 101 YLKKPKGVSMAQNIGFIDGVDLKAHVNNYVLVPPSNNAKG-MYEWDMVHSPTSGEMTEAP 159 Query: 7486 AWLLKLMERVEVLLT---------PFEGSSIIAEIKE---------GNRNSTLTSLAGTM 7361 L+ ++ ++ ++GS+ A++ E G RN+ L G + Sbjct: 160 LELINVLRELKPAYEYDASSFTSGDYQGSNKTAKLFETIVLGFGDTGGRNNALAEFVGGL 219 Query: 7360 RARGMTEESIYAALLAENNARCNPPLDE 7277 R + E Y N+ +P D+ Sbjct: 220 LLRNVDVEIAYTLAKMANHKTADPLSDK 247 Score = 47.8 bits (112), Expect = 2e-05 Identities = 51/204 (25%), Positives = 80/204 (39%), Gaps = 2/204 (0%) Frame = -1 Query: 645 MMDAALKYAEANIPVIPLHWICEGGLCSCKAGKNCDSKGKHPLYTGWYNNSTTDVEQIKK 466 M+D A+ Y + VIP+ GK PL + T+ E ++ Sbjct: 1 MIDYAIYYQQKGFSVIPI-----------------SKDGKKPLVAFADKPAFTEHE-LRL 42 Query: 465 WWTKTPNANIGIPTGAKSGWXXXXXXXXXDETLSAL-EATHGKL-PDTVTAVTGGGGLHY 292 W P+ANI + T + + + L L E H +L P T+ A T GG H Sbjct: 43 IWKDNPDANIALKTD--TFFVIDIDVHNDVDGLKNLREWEHARLIPKTLQATTPSGGRHI 100 Query: 291 IFKYSQGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTLAEAPE 112 K +G S+ F G D + V+ P + + Y+W HS + EAP Sbjct: 101 YLKKPKGVSMAQNIGFIDGVDLKAHVNNYVLVPPSNNAKGMYEWDMVHSPTSGEMTEAPL 160 Query: 111 WLLKLMEREEVLLTPFEGRSIVAG 40 L+ ++ RE ++ S +G Sbjct: 161 ELINVL-RELKPAYEYDASSFTSG 183 >ref|NP_695090.1|hypothetical protein Length = 269 Score = 67.4 bits (163), Expect = 2e-11 Identities = 69/278 (24%), Positives = 111/278 (39%), Gaps = 21/278 (7%) Frame = -3 Query: 8017 MMDAALKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQIKK 7838 M+D A+ Y VIP+ GK PL + K T+ I++ Sbjct: 1 MVDYAINYQRMGYSVIPI-----------------SKNGKTPLISFADKPPMTE-NDIRR 42 Query: 7837 WWTKTPNANIGIPTGEKSDWXXXXXXXXXDETLSALEA-THGKL-PDTVTAVTGSGGRHY 7664 W P+ANI + T + + + L+ L H +L P T+ A+T SGGRH Sbjct: 43 VWRDNPDANIALKTD--TFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGGRHI 100 Query: 7663 VFIYPKGRSIPNKTKFAPGLDMRSTGGLIAVAPSIHISGNRYEWLEGHSPFERIPAEAPA 7484 I G+D+++ + P + S YEW HSP + EAP Sbjct: 101 YLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITEAPL 160 Query: 7483 WLLKLMERVEVLLTPFEGSSIIAEI------------------KEGNRNSTLTSLAGTMR 7358 L+K++++++ +E SS ++ +G RN+ L G + Sbjct: 161 ALIKVLQKMKPEPLSYEVSSFASDCVRSTKTTKLFESILLGFGDKGGRNNALAEFVGGLL 220 Query: 7357 ARGMTEESIY-AALLAENNARCNPPLDEAEVRKIAHSV 7247 RG+ E Y A +A NN + PL + E + S+ Sbjct: 221 LRGVDPEITYHLAKMANNNTQ--EPLGDKEFERTFKSM 256 Score = 51.2 bits (121), Expect = 2e-06 Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 2/214 (0%) Frame = -1 Query: 645 MMDAALKYAEANIPVIPLHWICEGGLCSCKAGKNCDSKGKHPLYTGWYNNSTTDVEQIKK 466 M+D A+ Y VIP+ GK PL + T+ I++ Sbjct: 1 MVDYAINYQRMGYSVIPI-----------------SKNGKTPLISFADKPPMTE-NDIRR 42 Query: 465 WWTKTPNANIGIPTGAKSGWXXXXXXXXXDETLSALEA-THGKL-PDTVTAVTGGGGLHY 292 W P+ANI + T + + + L+ L H +L P T+ A+T GG H Sbjct: 43 VWRDNPDANIALKTD--TFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGGRHI 100 Query: 291 IFKYSQGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTLAEAPE 112 K I G D + ++ P + S Y+W HS D ++ EAP Sbjct: 101 YLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITEAPL 160 Query: 111 WLLKLMEREEVLLTPFEGRSIVAGIRKQPKRYRL 10 L+K++++ + +E S + + K +L Sbjct: 161 ALIKVLQKMKPEPLSYEVSSFASDCVRSTKTTKL 194 >ref|NP_049424.1|putative primase Length = 504 Score = 67.4 bits (163), Expect = 2e-11 Identities = 73/315 (23%), Positives = 134/315 (42%), Gaps = 18/315 (5%) Frame = -3 Query: 6871 RNGVVDLKTGELLPHKREYYMSKICPVEYKPSSKAPKWM-------EFLNTITGGSKELV 6713 +NG+ D + +LL ++ +E + APK + +L + G ELV Sbjct: 150 KNGIYDKRKKKLLSFDHKFI--NFSTIETELVENAPKPIINGWDVDSWLLDLMSGDSELV 207 Query: 6712 RYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLG-----DYARNTPSETFM 6548 L + + +SL+G+ S + L G G +GK TF IS+L+G N SE F Sbjct: 208 ELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKNVAPLKINQFSERF- 266 Query: 6547 AKRIEAIGNDIARLQGARLVTAIEINEGQRLSEAL-IKSFTGGDRITARFLYGEYFDFQP 6371 +A ++G ++ ++ G + E+ S G+ ++ + Q Sbjct: 267 ---------GLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYLAQF 317 Query: 6370 QFTPFLVVNHRPVIRDTSHSIWRRIKLIPF--TVTIPEDK---KDKQLPAKLREELPGIL 6206 + T N PV ++ S+ +RRI +IPF T I +D KD + K +L Sbjct: 318 KKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIKDDYINRK------EVL 371 Query: 6205 SWAVEGCLLWQKEGLNMPDEVKKATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRYAY 6026 + + + + N P ++ + ++EE +T F+ E ++ R + Y Sbjct: 372 EYVLWKAINLDFDKFNEPKATQERMQEFKEENNTVYKFLNEYLSDVVSTRIPVRFLWDVY 431 Query: 6025 ETWCRENGDYPLGQK 5981 +WC E G++ + +K Sbjct: 432 RSWCHE-GNHTIPKK 445 >ref|NP_049423.1|Hypothetical protein Length = 271 Score = 67.4 bits (163), Expect = 2e-11 Identities = 70/280 (25%), Positives = 111/280 (39%), Gaps = 21/280 (7%) Frame = -3 Query: 8023 MTMMDAALKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQI 7844 M M+D A+ Y VIP+ GK PL + K T+ I Sbjct: 1 MKMVDYAINYQRMGYSVIPI-----------------SKNGKTPLISFADKPPMTE-NDI 42 Query: 7843 KKWWTKTPNANIGIPTGEKSDWXXXXXXXXXDETLSALEA-THGKL-PDTVTAVTGSGGR 7670 ++ W P+ANI + T + + + L+ L H +L P T+ A+T SGGR Sbjct: 43 RRVWRDNPDANIALKTD--TFFVIDVDMHGDVDGLTNLRNWEHARLIPKTLQAITPSGGR 100 Query: 7669 HYVFIYPKGRSIPNKTKFAPGLDMRSTGGLIAVAPSIHISGNRYEWLEGHSPFERIPAEA 7490 H I G+D+++ + P + S YEW HSP + EA Sbjct: 101 HIYLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITEA 160 Query: 7489 PAWLLKLMERVEVLLTPFEGSSIIAEI------------------KEGNRNSTLTSLAGT 7364 P L+K++++++ +E SS ++ +G RN+ L G Sbjct: 161 PLALIKVLQKMKPEPLNYEVSSFASDSVRSTKTTKLFESILLGFGDKGGRNNALAEFVGG 220 Query: 7363 MRARGMTEESIY-AALLAENNARCNPPLDEAEVRKIAHSV 7247 + RG+ E Y A +A NN + PL E + S+ Sbjct: 221 LLLRGVDPEITYHLAKMANNNTQ--EPLGNKEFERTFKSM 258 Score = 50.4 bits (119), Expect = 3e-06 Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 2/188 (1%) Frame = -1 Query: 645 MMDAALKYAEANIPVIPLHWICEGGLCSCKAGKNCDSKGKHPLYTGWYNNSTTDVEQIKK 466 M+D A+ Y VIP+ GK PL + T+ I++ Sbjct: 3 MVDYAINYQRMGYSVIPI-----------------SKNGKTPLISFADKPPMTE-NDIRR 44 Query: 465 WWTKTPNANIGIPTGAKSGWXXXXXXXXXDETLSALEA-THGKL-PDTVTAVTGGGGLHY 292 W P+ANI + T + + + L+ L H +L P T+ A+T GG H Sbjct: 45 VWRDNPDANIALKTD--TFFVIDVDMHGDVDGLTNLRNWEHARLIPKTLQAITPSGGRHI 102 Query: 291 IFKYSQGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTLAEAPE 112 K I G D + ++ P + S Y+W HS D ++ EAP Sbjct: 103 YLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITEAPL 162 Query: 111 WLLKLMER 88 L+K++++ Sbjct: 163 ALIKVLQK 170 >ref|NP_695091.1|putative primase Length = 504 Score = 67.0 bits (162), Expect = 3e-11 Identities = 74/315 (23%), Positives = 134/315 (42%), Gaps = 18/315 (5%) Frame = -3 Query: 6871 RNGVVDLKTGELLPHKREYYMSKICPVEYKPSSKAPK-----WM--EFLNTITGGSKELV 6713 +NG+ D + +LL +Y +E + APK W +L + G ELV Sbjct: 150 KNGIYDKRKKKLLSF--DYKFINFSTIETELVENAPKPTINGWDVDSWLLDLMSGDSELV 207 Query: 6712 RYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLG-----DYARNTPSETFM 6548 L + + +SL+G+ S + L G G +GK TF IS+L+G N SE F Sbjct: 208 ELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKNVAPLKLNQFSERF- 266 Query: 6547 AKRIEAIGNDIARLQGARLVTAIEINEGQRLSEAL-IKSFTGGDRITARFLYGEYFDFQP 6371 +A ++G ++ ++ G + E+ S G+ ++ + Q Sbjct: 267 ---------GLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYLAQF 317 Query: 6370 QFTPFLVVNHRPVIRDTSHSIWRRIKLIPF--TVTIPEDK---KDKQLPAKLREELPGIL 6206 + T N PV ++ S+ +RRI +IPF T I +D KD + K +L Sbjct: 318 KKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIKDDYINRK------EVL 371 Query: 6205 SWAVEGCLLWQKEGLNMPDEVKKATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRYAY 6026 + + + + + P ++ + ++EE +T F+ E ++ R + Y Sbjct: 372 EYVLWKAINLDFDKFSEPKATQERMQEFKEENNTVYKFLNEYLSDVVSTRIPVRFLWDVY 431 Query: 6025 ETWCRENGDYPLGQK 5981 +WC E G++ + +K Sbjct: 432 RSWCHE-GNHTIPKK 445 >ref|NP_050002.1|putative primase Length = 382 Score = 67.0 bits (162), Expect = 3e-11 Identities = 74/315 (23%), Positives = 134/315 (42%), Gaps = 18/315 (5%) Frame = -3 Query: 6871 RNGVVDLKTGELLPHKREYYMSKICPVEYKPSSKAPK-----WM--EFLNTITGGSKELV 6713 +NG+ D + +LL +Y +E + APK W +L + G ELV Sbjct: 28 KNGIYDKRKKKLLSF--DYKFINFSTIETELVENAPKPTINGWDVDSWLLDLMSGDSELV 85 Query: 6712 RYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLG-----DYARNTPSETFM 6548 L + + +SL+G+ S + L G G +GK TF IS+L+G N SE F Sbjct: 86 ELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKNVAPLKLNQFSERF- 144 Query: 6547 AKRIEAIGNDIARLQGARLVTAIEINEGQRLSEAL-IKSFTGGDRITARFLYGEYFDFQP 6371 +A ++G ++ ++ G + E+ S G+ ++ + Q Sbjct: 145 ---------GLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYLAQF 195 Query: 6370 QFTPFLVVNHRPVIRDTSHSIWRRIKLIPF--TVTIPEDK---KDKQLPAKLREELPGIL 6206 + T N PV ++ S+ +RRI +IPF T I +D KD + K +L Sbjct: 196 KKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIKDDYINRK------EVL 249 Query: 6205 SWAVEGCLLWQKEGLNMPDEVKKATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRYAY 6026 + + + + + P ++ + ++EE +T F+ E ++ R + Y Sbjct: 250 EYVLWKAINLDFDKFSEPKATQERMQEFKEENNTVYKFLNEYLSDVVSTRIPVRFLWDVY 309 Query: 6025 ETWCRENGDYPLGQK 5981 +WC E G++ + +K Sbjct: 310 RSWCHE-GNHTIPKK 323 >ref|NP_049955.1|putative primase Length = 506 Score = 67.0 bits (162), Expect = 3e-11 Identities = 74/315 (23%), Positives = 134/315 (42%), Gaps = 18/315 (5%) Frame = -3 Query: 6871 RNGVVDLKTGELLPHKREYYMSKICPVEYKPSSKAPK-----WM--EFLNTITGGSKELV 6713 +NG+ D + +LL +Y +E + APK W +L + G ELV Sbjct: 152 KNGIYDKRKKKLLSF--DYKFINFSTIETELVENAPKPTINGWDVDSWLLDLMSGDSELV 209 Query: 6712 RYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLG-----DYARNTPSETFM 6548 L + + +SL+G+ S + L G G +GK TF IS+L+G N SE F Sbjct: 210 ELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKNVAPLKLNQFSERF- 268 Query: 6547 AKRIEAIGNDIARLQGARLVTAIEINEGQRLSEAL-IKSFTGGDRITARFLYGEYFDFQP 6371 +A ++G ++ ++ G + E+ S G+ ++ + Q Sbjct: 269 ---------GLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYLAQF 319 Query: 6370 QFTPFLVVNHRPVIRDTSHSIWRRIKLIPF--TVTIPEDK---KDKQLPAKLREELPGIL 6206 + T N PV ++ S+ +RRI +IPF T I +D KD + K +L Sbjct: 320 KKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIKDDYINRK------EVL 373 Query: 6205 SWAVEGCLLWQKEGLNMPDEVKKATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRYAY 6026 + + + + + P ++ + ++EE +T F+ E ++ R + Y Sbjct: 374 EYVLWKAINLDFDKFSEPKATQERMQEFKEENNTVYKFLNEYLSDVVSTRIPVRFLWDVY 433 Query: 6025 ETWCRENGDYPLGQK 5981 +WC E G++ + +K Sbjct: 434 RSWCHE-GNHTIPKK 447 >ref|NP_049954.1|putative replication protein Length = 271 Score = 67.0 bits (162), Expect = 3e-11 Identities = 69/280 (24%), Positives = 112/280 (40%), Gaps = 21/280 (7%) Frame = -3 Query: 8023 MTMMDAALKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQI 7844 M M+D A+ Y VIP+ + K PL + K T+ I Sbjct: 1 MEMVDYAINYQRMGYSVIPI-----------------SNNSKTPLISFADKPPMTE-NDI 42 Query: 7843 KKWWTKTPNANIGIPTGEKSDWXXXXXXXXXDETLSALEA-THGKL-PDTVTAVTGSGGR 7670 ++ W P+ANI + T + + + L+ L H +L P T+ A+T SGGR Sbjct: 43 RRVWRDNPDANIALRTD--TFFVIDVDMHGDVDGLTNLRNWEHARLIPQTLQAITPSGGR 100 Query: 7669 HYVFIYPKGRSIPNKTKFAPGLDMRSTGGLIAVAPSIHISGNRYEWLEGHSPFERIPAEA 7490 H I G+D+++ + P + S YEW HSP + EA Sbjct: 101 HIYLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITEA 160 Query: 7489 PAWLLKLMERVEVLLTPFEGSSIIAEI------------------KEGNRNSTLTSLAGT 7364 P L+K++++++ +E SS ++ +G RN+ L G Sbjct: 161 PLALIKVLQKMKPEPLSYEVSSFASDCVRSTKTTKLFESILLGFGDKGGRNNALAEFVGG 220 Query: 7363 MRARGMTEESIY-AALLAENNARCNPPLDEAEVRKIAHSV 7247 + RG+ E Y A +A NN + PL + E + S+ Sbjct: 221 LLLRGVDPEITYHLAKMANNNTQ--EPLGDKEFERTFKSM 258 Score = 49.3 bits (116), Expect = 7e-06 Identities = 49/214 (22%), Positives = 83/214 (38%), Gaps = 2/214 (0%) Frame = -1 Query: 645 MMDAALKYAEANIPVIPLHWICEGGLCSCKAGKNCDSKGKHPLYTGWYNNSTTDVEQIKK 466 M+D A+ Y VIP+ + K PL + T+ I++ Sbjct: 3 MVDYAINYQRMGYSVIPI-----------------SNNSKTPLISFADKPPMTE-NDIRR 44 Query: 465 WWTKTPNANIGIPTGAKSGWXXXXXXXXXDETLSALEA-THGKL-PDTVTAVTGGGGLHY 292 W P+ANI + T + + + L+ L H +L P T+ A+T GG H Sbjct: 45 VWRDNPDANIALRTD--TFFVIDVDMHGDVDGLTNLRNWEHARLIPQTLQAITPSGGRHI 102 Query: 291 IFKYSQGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTLAEAPE 112 K I G D + ++ P + S Y+W HS D ++ EAP Sbjct: 103 YLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITEAPL 162 Query: 111 WLLKLMEREEVLLTPFEGRSIVAGIRKQPKRYRL 10 L+K++++ + +E S + + K +L Sbjct: 163 ALIKVLQKMKPEPLSYEVSSFASDCVRSTKTTKL 196 >ref|NP_056712.1|putative primase Length = 504 Score = 67.0 bits (162), Expect = 3e-11 Identities = 74/315 (23%), Positives = 134/315 (42%), Gaps = 18/315 (5%) Frame = -3 Query: 6871 RNGVVDLKTGELLPHKREYYMSKICPVEYKPSSKAPK-----WM--EFLNTITGGSKELV 6713 +NG+ D + +LL +Y +E + APK W +L + G ELV Sbjct: 150 KNGIYDKRKKKLLSF--DYKFINFSTIETELVENAPKPTINGWDVDSWLLDLMSGDSELV 207 Query: 6712 RYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLG-----DYARNTPSETFM 6548 L + + +SL+G+ S + L G G +GK TF IS+L+G N SE F Sbjct: 208 ELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKNVAPLKLNQFSERF- 266 Query: 6547 AKRIEAIGNDIARLQGARLVTAIEINEGQRLSEAL-IKSFTGGDRITARFLYGEYFDFQP 6371 +A ++G ++ ++ G + E+ S G+ ++ + Q Sbjct: 267 ---------GLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYLAQF 317 Query: 6370 QFTPFLVVNHRPVIRDTSHSIWRRIKLIPF--TVTIPEDK---KDKQLPAKLREELPGIL 6206 + T N PV ++ S+ +RRI +IPF T I +D KD + K +L Sbjct: 318 KKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIKDDYINRK------EVL 371 Query: 6205 SWAVEGCLLWQKEGLNMPDEVKKATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRYAY 6026 + + + + + P ++ + ++EE +T F+ E ++ R + Y Sbjct: 372 EYVLWKAINLDFDKFSEPKATQERMQEFKEENNTVYKFLNEYLSDVVSTRIPVRFLWDVY 431 Query: 6025 ETWCRENGDYPLGQK 5981 +WC E G++ + +K Sbjct: 432 RSWCHE-GNHTIPKK 445 >ref|NP_056711.1|gp271 Length = 271 Score = 66.2 bits (160), Expect = 5e-11 Identities = 69/280 (24%), Positives = 111/280 (39%), Gaps = 21/280 (7%) Frame = -3 Query: 8023 MTMMDAALKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQI 7844 M M+D A+ Y VIP+ K PL + K T+ I Sbjct: 1 MEMVDYAINYQRMGYSVIPI-----------------SKNSKTPLISFADKPPMTE-NDI 42 Query: 7843 KKWWTKTPNANIGIPTGEKSDWXXXXXXXXXDETLSALEA-THGKL-PDTVTAVTGSGGR 7670 ++ W P+ANI + T + + + L+ L H +L P T+ A+T SGGR Sbjct: 43 RRVWRDNPDANIALRTD--TFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGGR 100 Query: 7669 HYVFIYPKGRSIPNKTKFAPGLDMRSTGGLIAVAPSIHISGNRYEWLEGHSPFERIPAEA 7490 H I G+D+++ + P + S YEW HSP + EA Sbjct: 101 HIYLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITEA 160 Query: 7489 PAWLLKLMERVEVLLTPFEGSSIIAEI------------------KEGNRNSTLTSLAGT 7364 P L+K++++++ +E SS ++ +G RN+ L G Sbjct: 161 PLALIKVLQKMKPEPLSYEVSSFASDCVRSTKTTKLFESILLGFGDKGGRNNALAEFVGG 220 Query: 7363 MRARGMTEESIY-AALLAENNARCNPPLDEAEVRKIAHSV 7247 + RG+ E Y A +A NN + PL + E + S+ Sbjct: 221 LLLRGVDPEITYHLAKMANNNTQ--EPLGDKEFERTFKSM 258 Score = 48.5 bits (114), Expect = 1e-05 Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 2/214 (0%) Frame = -1 Query: 645 MMDAALKYAEANIPVIPLHWICEGGLCSCKAGKNCDSKGKHPLYTGWYNNSTTDVEQIKK 466 M+D A+ Y VIP+ K PL + T+ I++ Sbjct: 3 MVDYAINYQRMGYSVIPI-----------------SKNSKTPLISFADKPPMTE-NDIRR 44 Query: 465 WWTKTPNANIGIPTGAKSGWXXXXXXXXXDETLSALEA-THGKL-PDTVTAVTGGGGLHY 292 W P+ANI + T + + + L+ L H +L P T+ A+T GG H Sbjct: 45 VWRDNPDANIALRTD--TFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGGRHI 102 Query: 291 IFKYSQGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFDKTLAEAPE 112 K I G D + ++ P + S Y+W HS D ++ EAP Sbjct: 103 YLKKDPNHPISQNIGMIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITEAPL 162 Query: 111 WLLKLMEREEVLLTPFEGRSIVAGIRKQPKRYRL 10 L+K++++ + +E S + + K +L Sbjct: 163 ALIKVLQKMKPEPLSYEVSSFASDCVRSTKTTKL 196 >ref|NP_076775.1|helicase Length = 542 Score = 66.2 bits (160), Expect = 5e-11 Identities = 72/329 (21%), Positives = 126/329 (38%), Gaps = 25/329 (7%) Frame = -3 Query: 6868 NGVVDLKTGELLPHKREYYMSKICPVEYKPSSKAPK---WME--FLNTITGGSKELVRYL 6704 NG+ + KT +L P +Y + +Y +K P W +L + G KELV L Sbjct: 184 NGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMSGDKELVSLL 243 Query: 6703 QKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLGDYARNTPSETFMAKRIEAIG 6524 + + +S +G+ S + L G G +GK TF + I +L+G Sbjct: 244 WQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGR------------------- 284 Query: 6523 NDIARLQGARLVTAIEINEGQRLSEALIKSFTGGDRITARFL--YGEYFDF--------- 6377 + V A + E LS+ + K+ GD +L G YF Sbjct: 285 ------ENVASVKAEQFAERFALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIE 338 Query: 6376 ----QPQFTPF--LVV---NHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDKQLPAKLRE 6224 QP F LV+ N P R+ S+ +RR+ ++PF + D D ++ + Sbjct: 339 AKGKQPTLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIK 398 Query: 6223 ELPGILSWAVEGCLLWQKEGLNMPDEVKKATEGYREEMDTFSSFIEECCIVEEGRKVSNR 6044 +L + ++ L E + P + + ++ D +F+ + + Sbjct: 399 R-KDVLEYVLKIALSLNFEKFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTA 457 Query: 6043 SIRYAYETWCRENGDYPLGQKLFNAKMTE 5957 I Y WC + G P ++ F K+ + Sbjct: 458 FISALYRAWCEDEGVKPFTKREFENKLPD 486 >ref|NP_795450.1|putative DNA primase Length = 290 Score = 55.8 bits (133), Expect = 7e-08 Identities = 58/267 (21%), Positives = 117/267 (43%), Gaps = 9/267 (3%) Frame = -3 Query: 6694 VGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLGDYARNTPSETFMAKRIEAIGNDI 6515 + +SL+G+ S + G G +GK TF IS+L+G + P + + + E G + Sbjct: 1 MAASLNGNYSYRKSIWFVGDGNDGKGTFQQMISNLVG-FKNVAPLK--LNQFSERFG--L 55 Query: 6514 ARLQGARLVTAIEINEGQRLSEAL-IKSFTGGDRITARFLYGEYFDFQPQFTPFLVVNHR 6338 A ++G ++ ++ G + E+ S G+ ++ + + T N Sbjct: 56 AIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYMAIFKKTVIQSTNGM 115 Query: 6337 PVIRDTSHSIWRRIKLIPF--TVTIPEDK---KDKQLPAKLREELPGILSWAVEGCLLWQ 6173 P ++ S+ +RRI +IPF T + ED KD + K +L + + + Sbjct: 116 PSFKNKSNGTYRRIIIIPFQKTFSSTEDNWAIKDDYINRK------EVLEYVLWKAINLD 169 Query: 6172 KEGLNMPDEVKKATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRYAYETWCRENGDYP 5993 + + P ++ ++ + +T +FI++ + R + + Y+ WC++NG P Sbjct: 170 FDRFSEPKATQERMHAFKRDSNTILAFIDDWFERFTSTVLPTRFLWWLYKEWCKDNGHTP 229 Query: 5992 LGQKLFNAKMTER---GFAVKRSGANG 5921 L Q F +++ G+ K+S G Sbjct: 230 LKQSTFENELSTNIPDGWVKKKSRVAG 256 >ref|NP_795620.1|putative DNA primase Length = 292 Score = 52.4 bits (124), Expect = 8e-07 Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 11/242 (4%) Frame = -3 Query: 6694 VGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLGDYARNTPSETFMAKRIEAIGNDI 6515 + +SL+G+ S + G G +GK TF IS+L+G + P + + + E G + Sbjct: 1 MAASLNGNYSYRKSIWFVGDGNDGKGTFQQMISNLVG-FKNVAPLK--LNQFSERFG--L 55 Query: 6514 ARLQGARLVTAIEINEGQRLSEAL-IKSFTGGDRITARFLYGEYFDFQPQFTPFLVVNHR 6338 A ++G ++ ++ G + E+ S G+ ++ + + T N Sbjct: 56 AIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYMAIFKKTVIQSTNGM 115 Query: 6337 PVIRDTSHSIWRRIKLIPF--TVTIPEDK---KDKQLPAKLREELPGILSWAVEGCLLWQ 6173 PV ++ S+ +RRI +IPF T + ED KD + K V +LW+ Sbjct: 116 PVFKNKSNGTYRRIIIIPFKKTFSSAEDNWAIKDDYINRK-----------EVLEYVLWK 164 Query: 6172 KEGLNM-----PDEVKKATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRYAYETWCRE 6008 L+ P + ++EE +T F+ E E ++ R + Y++WC E Sbjct: 165 SINLDFDKFYEPKVTQDRMREFKEENNTILKFLNEYLEDVESTRLPVRFLWDVYQSWCTE 224 Query: 6007 NG 6002 NG Sbjct: 225 NG 226 >ref|NP_700379.1|Major capsid protein precursor Length = 401 Score = 51.6 bits (122), Expect = 1e-06 Identities = 59/250 (23%), Positives = 109/250 (43%), Gaps = 7/250 (2%) Frame = -1 Query: 5505 LTKEQEQQFNRYKDRITRINDSIDEELSKIRTSEPILNMPHNPMAREDVSKIPVTKAISK 5326 + +E +Q+F+ +K + + ++I++E K+ LN ++ + K + K + + Sbjct: 11 VAQELQQKFDDFKAKNDKRVEAIEQEKGKLAGQVETLN---GKLSELENLKSDLEKELLE 67 Query: 5325 SFRGMFYGNETVSLSNNGFHSMDEFLRTLHSGRADNR--LINASMVEGIPEFGGYSVPEE 5152 R V+ + D F+ L GR D L ++ G E GGY+VPEE Sbjct: 68 LKRPARGAQNKVAAEHK-----DAFVGFLRKGREDGLRDLERKALQVGTDEDGGYAVPEE 122 Query: 5151 YGAFLMDKSLENEIIRPRATVWAM-GSETKKVSAFDGADRTNHLFGGISGEWLEEGQTGT 4975 ++ + ++R ATV + GS+ KK+ GG + W+ G+T T Sbjct: 123 LDRSILSLLKDEVVMRQEATVITVGGSDYKKLVN----------LGGTASGWV--GETDT 170 Query: 4974 RK---TAKLRLIQLKAKKLACFSQASNELIADG-MSFEEMLAGALIKGLGWYMDYAFING 4807 R T++L LI+ ++ QA+ +++ D + E + L + AF G Sbjct: 171 RSQTATSRLGLIEPFMGEIYGNPQATQKMLDDAFFNVEAWINSELATEFAEQEEIAFTTG 230 Query: 4806 TGEGQPLGII 4777 G +P G + Sbjct: 231 DGTKKPKGFL 240 >ref|NP_543092.1|putative major capsid protein Length = 407 Score = 50.1 bits (118), Expect = 4e-06 Identities = 56/250 (22%), Positives = 111/250 (44%), Gaps = 7/250 (2%) Frame = -1 Query: 5505 LTKEQEQQFNRYKDRITRINDSIDEELSKIRTSEPILNMPHNPMAREDVSKIPVTKAISK 5326 + +E +++F+ +K++ + D+I++E K+ LN +A + K + +++ Sbjct: 10 VAQELQRKFDDFKEKNDKRIDAIEQEKGKLAGEVETLN---GKLAELENLKSDLEAELAE 66 Query: 5325 SFRGMFYGNETVSLSNNGFHSMDEFLRTLHSGRADN--RLINASMVEGIPEFGGYSVPEE 5152 R V+ + + F+ + GR D L ++ G E GGY++PEE Sbjct: 67 VKRPAGGTQNKVASEHK-----EAFIGFMRKGREDGLRELERKALQVGNDEDGGYAIPEE 121 Query: 5151 YGAFLMDKSLENEIIRPRATVWAM-GSETKKVSAFDGADRTNHLFGGISGEWLEEGQTGT 4975 ++ + ++R ATV + GS+ KK+ GG + W+ G+T Sbjct: 122 LDRTILTLLKDEVVMRQEATVITLGGSDYKKLVN----------LGGTTSGWV--GETDA 169 Query: 4974 R---KTAKLRLIQLKAKKLACFSQASNELIADG-MSFEEMLAGALIKGLGWYMDYAFING 4807 R T+KL LI+ ++ QA+ +++ D + E+ + L + AF +G Sbjct: 170 RPETATSKLGLIEPFMGEIYGNPQATQKMLDDAFFNVEDWINSELALEFAEQEEIAFTSG 229 Query: 4806 TGEGQPLGII 4777 G +P G + Sbjct: 230 DGSKKPKGFL 239 >ref|NP_892050.1|capsid protein Length = 366 Score = 43.1 bits (100), Expect = 5e-04 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 4/122 (3%) Frame = -1 Query: 5148 GAFLMDKSLENEII---RPRATVWAMGSETKKVSAFDGADRTNHLFGGISGEWLEEGQTG 4978 G L+ ++++NE+I R R V +G+ + + +G L GG + ++ EG+ Sbjct: 73 GGALIPQNMQNEVIELLRDRTVVRILGA--RSIPLPNGNLSMPRLSGGATAGYVGEGKDV 130 Query: 4977 TRKTAKLRLIQLKAKKLACFSQASNELIA-DGMSFEEMLAGALIKGLGWYMDYAFINGTG 4801 A ++L AK + SN+LI G + E++L G ++ + D AF+ G Sbjct: 131 VATGATFDDVKLSAKTMIALVPVSNQLIGRAGFNVEQLLLGDILSAIATREDKAFLRDDG 190 Query: 4800 EG 4795 G Sbjct: 191 TG 192 >ref|NP_813696.1|gp36 Length = 390 Score = 39.7 bits (91), Expect = 0.005 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 8/156 (5%) Frame = -1 Query: 4806 TGEGQPLGIINDPALITVNKEASQEPATITYQNVVNMFSRLAPSCFTNAVWLANPSVIPQ 4627 TG GQP GI+ D + T A+ + ++ ++++F + + NA ++ N Sbjct: 233 TGTGQPRGILTDASPATATFLATDTDSKVS-DALIDLFHEVPSAYRANAKYVVND----- 286 Query: 4626 LLTMXXXXXXXGAQIPVFREESGKFT-----LLGKEVLFTEKCPTL--GAKGDLIL-ADL 4471 AQ+ ++ +G++ +G LF K G D IL ADL Sbjct: 287 ---------LRAAQMRKLKDANGQYLWQSGLTVGAPSLFNGKVVETDDGMPADKILFADL 337 Query: 4470 SQYAIGMRKEIALDRSNVPGWMEDMTDYRVIVRVDG 4363 S+Y + + +DRS + D YR + R DG Sbjct: 338 SKYRVRFAGSLRVDRSVDAKFSTDQIVYRFLQRADG 373 >ref|NP_047927.1|gp36 Length = 392 Score = 39.3 bits (90), Expect = 0.007 Identities = 59/267 (22%), Positives = 98/267 (36%), Gaps = 4/267 (1%) Frame = -1 Query: 5151 YGAFLMDKSLENEIIRPRATVWAMGSETKKVSAFDGADRTNHLFGGISGEWLEEGQTGTR 4972 YG + + I+R A+ + T + D T GI GE E ++ Sbjct: 127 YGQLIAQAVERSAIMRGGASTFT----TSDANPMDFTVITGRATAGIVGETAEIPESYPA 182 Query: 4971 KTAKLRLIQLKAKKLACFSQASNELIADGMSFEEMLAGALIK----GLGWYMDYAFINGT 4804 T + + K S S E D + L G L+ +G M F+ GT Sbjct: 183 TTQR----SMGGFKYGFASVVSYEFATDQVLD---LVGFLVSDAGPAIGDAMGRHFLTGT 235 Query: 4803 GEGQPLGIINDPALITVNKEASQEPATITYQNVVNMFSRLAPSCFTNAVWLANPSVIPQL 4624 G GQP GI+ D + + ++ ++++F + + NA ++ N Q+ Sbjct: 236 GTGQPRGILTDATGANAAFGEADADSKVS-DALIDLFHEVPSAYRKNAKFVVNDLRAAQM 294 Query: 4623 LTMXXXXXXXGAQIPVFREESGKFTLLGKEVLFTEKCPTLGAKGDLILADLSQYAIGMRK 4444 + Q + F GK V + P ++ ADLS+Y + Sbjct: 295 RKLKDANGQYLWQSALTVGAPDTFN--GKVVETDDGMPA----DKVLFADLSKYRVRFAG 348 Query: 4443 EIALDRSNVPGWMEDMTDYRVIVRVDG 4363 + +DRS + D YR + R DG Sbjct: 349 SLRVDRSVDAKFSTDQIVYRFLQRADG 375 >ref|NP_076774.1|hypothetical protein Length = 264 Score = 37.7 bits (86), Expect = 0.021 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 21/229 (9%) Frame = -3 Query: 7870 NSTTDVEQIKKWWTKTPNANIGIPTGEKS----DWXXXXXXXXXDETLSAL--EATHGKL 7709 + + D + W+ + PN NI I D S L E + G++ Sbjct: 36 SGSLDEITVSAWFDEIPNRNIMINLRNSGLICIDLDQHQNGQNGRNVFSRLWNEHSEGEI 95 Query: 7708 PDTVTAVTGSG-GRHYVFIYPKGR-SIPNKTKFAPGLDMRSTGGLIAVAPSIHISGNRYE 7535 T T +G G H F PK + P ++ A G+++++ + PS G+ Sbjct: 96 LSTYVEKTPTGNGLHVFFKVPKTIFNSPLVSELADGVEIKTH--FTPIYPSKRTDGDYIP 153 Query: 7534 W--LEGHSP--FERIPAEAPAWLLKLMERVEVLLTPFEGSSII-AEI--------KEGNR 7394 E + P F+ + + P WLL++++R + T S AE+ ++GNR Sbjct: 154 LNDTETNEPLTFDSL-CDCPDWLLEMIQRPQARATTGTSSRTYGAEMWELFNQGARKGNR 212 Query: 7393 NSTLTSLAGTMRARGMTEESIYAALLAENNARCNPPLDEAEVRKIAHSV 7247 N+ + R G+ S L NN R +PPL + E+ I SV Sbjct: 213 NNDTNRILHYWRKIGIDNNSCMDLLRTFNN-RTSPPLPDDELATIWKSV 260 >ref|NP_899347.1|hypothetical protein Length = 219 Score = 35.4 bits (80), Expect = 0.10 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 12/89 (13%) Frame = -1 Query: 1674 DIVNNFLEKKIDA----DETIEQLITRIDPLEVYKLDNELLITDCY--------FAIKHL 1531 ++V F +KKIDA DE + + ID E YK+ +L Y + Sbjct: 102 ELVEKF-KKKIDAQLEEDERTVERLCNID--EAYKIHPDLTNLHVYAWGGDRRYIPMYDF 158 Query: 1530 TENGYETTIRELQYFRECFAGQRLYDINE 1444 + Y+ TI +L+YFR+C A + ++ E Sbjct: 159 ENSKYDDTIEQLEYFRDCIANATVREVTE 187 >ref|NP_050656.1|Com Length = 62 Score = 33.9 bits (76), Expect = 0.30 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%) Frame = -1 Query: 894 VRCPHCNHGMFDADYAD-VEIKCPVCRK------VFEVKLEKKAG*KVNKSGPEPQRERM 736 +RC +CN +F AD D +EI+CP C++ E EK G +RE++ Sbjct: 4 IRCKNCNKLLFKADSFDHIEIRCPRCKRHIIMLNACEHPTEKHCG----------KREKI 53 Query: 735 TH 730 TH Sbjct: 54 TH 55 >ref|NP_599037.1|capsid Length = 409 Score = 33.5 bits (75), Expect = 0.39 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%) Frame = -1 Query: 5181 EFGGYSVPEEYGAFLMDKSLENEIIRPRATVWAMGSETKKVSAFDGADRTNHLFGGISGE 5002 E GGY+VPE + A +++K I A + + + + + AD T+ + G + GE Sbjct: 123 EKGGYTVPETFLAKVVEKMKSYGGIASVAQI--LTTSDGRTMEWATADGTSEV-GVLLGE 179 Query: 5001 WLEEGQTGTR-KTAKLRLIQLKAKKLACFSQASNELIAD-GMSFEEMLAGALIKGLGWYM 4828 E G+ T L +++ +K + + SNEL+ D + E LA + + +G Sbjct: 180 NEEAGEEDTDFGMGSLGALKMTSKII----RVSNELLQDSAIDMEAYLARRIAERIGRGE 235 Query: 4827 DYAFINGTGEGQP 4789 I GTG G P Sbjct: 236 ARYLIQGTGAGTP 248 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,209,577 Number of Sequences: 14420 Number of extensions: 980481 Number of successful extensions: 2893 Number of sequences better than 0.5: 40 Number of HSP's better than 0.5 without gapping: 2255 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2831 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4266193074 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig163 (8243 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_006884.1|putative acetyltransferase-related protein 86 8e-17 ref|NP_861810.1|Vs.6 conserved hypothetical protein 83 4e-16 ref|NP_891670.1|Vs.6 conserved hypothetical protein 83 5e-16 ref|NP_049730.1|Vs.6 conserved hypothetical protein 82 7e-16 ref|NP_932473.1|Vs.6 79 8e-15 ref|NP_061653.1|transposase 79 1e-14 ref|NP_943917.1|Vs.6 conserved hypothetical protein 68 1e-11 ref|NP_861774.1|NrdG anaerobic NTP reductase, small subunit 57 3e-08 ref|NP_049688.1|NrdG anaerobic NTP reductase, small subunit 55 2e-07 ref|NP_899263.1|anaerobic NTP reductase small subunit 54 3e-07 ref|NP_945003.1|putative nrdG 54 3e-07 ref|NP_943918.1|NrdG anaerobic NTP reductase small subunit 40 0.005 ref|NP_040341.1|putative transposase 35 0.097 ref|NP_861861.1|gp10 baseplate wedge subunit and tail pin 34 0.28 ref|NP_817766.1|gp5 33 0.48 >ref|YP_006884.1|putative acetyltransferase-related protein Length = 122 Score = 85.5 bits (210), Expect = 8e-17 Identities = 40/55 (72%), Positives = 46/55 (83%) Frame = +1 Query: 3760 QGGHHINVNVFEKETLLDAMEHPEKYPQLTIRVSGYAVNFIKLTREQQLDVINRT 3924 +GG H+NVNV ++ LLDA +HPEKYPQLTIRVSGYAV F LTREQQ DVI+RT Sbjct: 63 EGGQHLNVNVLSRDQLLDAQKHPEKYPQLTIRVSGYAVRFNALTREQQNDVISRT 117 >ref|NP_861810.1|Vs.6 conserved hypothetical protein Length = 120 Score = 83.2 bits (204), Expect = 4e-16 Identities = 39/55 (70%), Positives = 45/55 (81%) Frame = +1 Query: 3760 QGGHHINVNVFEKETLLDAMEHPEKYPQLTIRVSGYAVNFIKLTREQQLDVINRT 3924 +GG H+NVN+ +ETL DA++HPEKYPQLTIRVSGYAV F LT EQQ DVI RT Sbjct: 61 EGGQHLNVNILRRETLEDAVKHPEKYPQLTIRVSGYAVRFNSLTPEQQRDVIART 115 >ref|NP_891670.1|Vs.6 conserved hypothetical protein Length = 138 Score = 82.8 bits (203), Expect = 5e-16 Identities = 39/55 (70%), Positives = 45/55 (81%) Frame = +1 Query: 3760 QGGHHINVNVFEKETLLDAMEHPEKYPQLTIRVSGYAVNFIKLTREQQLDVINRT 3924 +GG H+N+NV +E LLDA+EHPEKYPQLTIRVSGYAV F LT +QQ DVI RT Sbjct: 79 EGGQHLNINVLLREMLLDAVEHPEKYPQLTIRVSGYAVRFNSLTPDQQRDVIART 133 >ref|NP_049730.1|Vs.6 conserved hypothetical protein Length = 120 Score = 82.4 bits (202), Expect = 7e-16 Identities = 40/55 (72%), Positives = 44/55 (80%) Frame = +1 Query: 3760 QGGHHINVNVFEKETLLDAMEHPEKYPQLTIRVSGYAVNFIKLTREQQLDVINRT 3924 +GG H+NVNV ETL DA++HPEKYPQLTIRVSGYAV F LT EQQ DVI RT Sbjct: 61 EGGQHLNVNVLRHETLEDAVKHPEKYPQLTIRVSGYAVRFNSLTPEQQRDVIART 115 >ref|NP_932473.1|Vs.6 Length = 122 Score = 79.0 bits (193), Expect = 8e-15 Identities = 38/55 (69%), Positives = 44/55 (80%) Frame = +1 Query: 3760 QGGHHINVNVFEKETLLDAMEHPEKYPQLTIRVSGYAVNFIKLTREQQLDVINRT 3924 +GG H+NVNV ++ TL DA+ +PEKYPQLTIRVSGYAV F LT EQQ DVI RT Sbjct: 63 EGGQHLNVNVLDRNTLEDAIVNPEKYPQLTIRVSGYAVRFNALTPEQQRDVITRT 117 >ref|NP_061653.1|transposase Length = 328 Score = 78.6 bits (192), Expect = 1e-14 Identities = 42/120 (35%), Positives = 62/120 (51%) Frame = -2 Query: 8239 KDSNTVNEALSELKNCYGKDVSNVFRTITADNGSEFSRLSEMLQGLGIEAYFTHPYSSWE 8060 + SN++ A++ L K +TIT D G EFS + I YF PYS+W+ Sbjct: 211 RSSNSMETAINNLIKHLPK---GAVKTITVDRGKEFSCYQNIENQFNINVYFADPYSAWQ 267 Query: 8059 RGTNERHNGLIRRFIPKGKAIKDFSEETIKRIQQWLNSLPRRILGYKTPEECFNEEIHNL 7880 RGTNE NGL+R F PK + ++E + +N PR+ L +K P E +E+ +L Sbjct: 268 RGTNENTNGLLREFFPKKTDLAKVNQEQLNYALDSINYRPRKCLNWKFPYEVLCDELLHL 327 >ref|NP_943917.1|Vs.6 conserved hypothetical protein Length = 125 Score = 68.2 bits (165), Expect = 1e-11 Identities = 33/73 (45%), Positives = 48/73 (65%) Frame = +1 Query: 3706 DEETRINNLKSMLDGYFKQGGHHINVNVFEKETLLDAMEHPEKYPQLTIRVSGYAVNFIK 3885 ++ETR ++S+ + G H+NVNV +E L+ A+E P +YP L +R+SGYAV F Sbjct: 53 EQETRDVEIESV-----QHAGQHLNVNVLSREHLMLAIEDPNRYPNLVVRISGYAVRFNA 107 Query: 3886 LTREQQLDVINRT 3924 LT EQQ D++ RT Sbjct: 108 LTPEQQRDIVTRT 120 >ref|NP_861774.1|NrdG anaerobic NTP reductase, small subunit Length = 156 Score = 57.0 bits (136), Expect = 3e-08 Identities = 39/141 (27%), Positives = 80/141 (56%), Gaps = 8/141 (5%) Frame = +3 Query: 4014 LDGPGIRFVVFMQGCPLRCIYCHNRDTWDVNAGSEYTPRQVIDEMMKYI--DYIKVSGGG 4187 ++GPG R V+F+ GC +C C+N+ TW+ G +T + ++++++ + DYI+ G Sbjct: 12 VNGPGCRVVLFVTGCLHKCEGCYNKSTWNARNGVPFT-GETLEQLIECLNNDYIE----G 66 Query: 4188 ITVTGGEPVL--QADFVAEVFRLAKEQGVHTAL---DTNGFADIEKVERLIKYTDLVLLD 4352 +T+TGG+P+ D + + + K + ++ F DI+++E ++KY D V++D Sbjct: 67 LTITGGDPLYPDNRDVIHCIAQTVKNLYPNKSIWLWTGYKFEDIKQLE-MLKYVD-VIID 124 Query: 4353 IKHARE-DKHKIITGVSNEKI 4412 K+ + K+ G N+++ Sbjct: 125 GKYEKNLPTKKLWRGSDNQRL 145 >ref|NP_049688.1|NrdG anaerobic NTP reductase, small subunit Length = 156 Score = 54.7 bits (130), Expect = 2e-07 Identities = 41/142 (28%), Positives = 76/142 (53%), Gaps = 9/142 (6%) Frame = +3 Query: 4014 LDGPGIRFVVFMQGCPLRCIYCHNRDTWDVNAGSEYTPRQVIDEMMKYI--DYIKVSGGG 4187 ++GPG R V+F+ GC +C C+NR TW+ G +T + E+ ++ YI+ G Sbjct: 12 VNGPGCRVVLFVTGCLHKCEGCYNRSTWNARNGQLFT-MNTVKELASHLSKSYIQ----G 66 Query: 4188 ITVTGGEPVLQ------ADFVAEVFRLAKEQGVHTALDTNGFADIEKVERLIKYTDLVLL 4349 +T+TGG+P+ ++ V+ V E+ + F DI+++E ++KY D V++ Sbjct: 67 LTLTGGDPLYPQNREEISNLVSWVKARFPEKDIWLWTGYK-FEDIKQLE-MLKYVD-VII 123 Query: 4350 DIKHARE-DKHKIITGVSNEKI 4412 D K+ + K+ G N+++ Sbjct: 124 DGKYEKNLPTKKLWRGSDNQRL 145 >ref|NP_899263.1|anaerobic NTP reductase small subunit Length = 158 Score = 53.5 bits (127), Expect = 3e-07 Identities = 26/91 (28%), Positives = 45/91 (49%) Frame = +3 Query: 3984 RIHSFESFGTLDGPGIRFVVFMQGCPLRCIYCHNRDTWDVNAGSEYTPRQVIDEMMKYID 4163 + F +G G+R +F+ GC RC C+N TWD N G ++T + D + Sbjct: 2 KYQKINEFDFANGEGVRLSIFVSGCEHRCAGCYNESTWDPNDGIDFTEETLRDVLTSLEQ 61 Query: 4164 YIKVSGGGITVTGGEPVLQADFVAEVFRLAK 4256 + G+++TGG+P+ + A + R+ K Sbjct: 62 H-----DGLSLTGGDPLYPGNREA-ILRICK 86 >ref|NP_945003.1|putative nrdG Length = 161 Score = 53.5 bits (127), Expect = 3e-07 Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 5/143 (3%) Frame = +3 Query: 4005 FGTLDGPGIRFVVFMQGCPLRCIYCHNRDTWDVNAGSEYTPRQVIDEMMKYIDYIKVSGG 4184 F T +G G+R +F+ GC C C NR++W NAG E+T + +++ ++ +S Sbjct: 9 FDTANGEGVRVSLFVAGCKHHCEGCFNRESWKFNAGKEFTYANLYG-ILRLLEDDSLS-- 65 Query: 4185 GITVTGGEPVLQADFVAEVFRLA-KEQGVHTALDT---NGFADIEKVE-RLIKYTDLVLL 4349 G+++ GGEP L V EV ++ K + ++ GF EK+ ++KY D+V+ Sbjct: 66 GLSILGGEP-LDDRNVEEVTKICQKVKSIYPEKSIWLWTGFQLHEKIHLDVMKYVDVVID 124 Query: 4350 DIKHAREDKHKIITGVSNEKIKR 4418 + + K G N+ + R Sbjct: 125 GKYDSSKPTVKPYRGSDNQNLWR 147 >ref|NP_943918.1|NrdG anaerobic NTP reductase small subunit Length = 159 Score = 39.7 bits (91), Expect = 0.005 Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Frame = +3 Query: 3984 RIHSFESFGTLDGPGIRFVVFMQGCPLRCIYCHNRDT--WDVNAGSEYTPRQVIDEMMKY 4157 +I ++S L+G G R +++ GC +C C ++ T WD E R++++ M Sbjct: 2 KILDYKSLDVLNGTGTRASIWLAGCSHQCKGCFSKSTWKWDGKTEEEIQLRKLVERDM-- 59 Query: 4158 IDYIKVSGGGITVTGGEPV 4214 + ++ GI++ GG+P+ Sbjct: 60 -NDSRIKREGISLLGGDPL 77 >ref|NP_040341.1|putative transposase Length = 322 Score = 35.4 bits (80), Expect = 0.097 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 1/117 (0%) Frame = -2 Query: 8236 DSNTVNEALSELKNCYGKD-VSNVFRTITADNGSEFSRLSEMLQGLGIEAYFTHPYSSWE 8060 +++T E + K+ K+ + + I D EFS+ EM + YF S + Sbjct: 206 ENHTAREVEKKFKDIIIKNNLIGKIKGIITDRRKEFSKWREMEIFAETQVYFCDAGSPQQ 265 Query: 8059 RGTNERHNGLIRRFIPKGKAIKDFSEETIKRIQQWLNSLPRRILGYKTPEECFNEEI 7889 + E N +R + PKG S++ I + +N R L + + +E F + I Sbjct: 266 KPLIEYMNSELRHWFPKGTDFNKVSQKQIDWVVNVINDKLRPCLNWISSKEMFLQNI 322 >ref|NP_861861.1|gp10 baseplate wedge subunit and tail pin Length = 604 Score = 33.9 bits (76), Expect = 0.28 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Frame = +3 Query: 189 VNEKNTGTYENDLDQKKVADAAKDGTVGTVSETV-YSTVQPTATPEKELKIVAVGDILLG 365 +++ N NDLD GTVGT S T+ S + PT T EK L G I++G Sbjct: 496 ISDPNFALNNNDLDSSGNPTHTAGGTVGTTSNTLTNSDLPPTQTDEKVLISDENGTIIIG 555 >ref|NP_817766.1|gp5 Length = 237 Score = 33.1 bits (74), Expect = 0.48 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%) Frame = +3 Query: 3999 ESFG-TLDGPG------IRFVVFMQGCPLRCIYCHNRDTWDVNAGSEYTPRQVIDEMMKY 4157 E FG TL G G ++F+ M GC L C +C TWD + + Sbjct: 12 ELFGPTLQGEGPYAGVTVQFLRLM-GCNLSCSWCDTPYTWDARE-HDLNAETTLLAWPDI 69 Query: 4158 IDYIKVSGGGITVTGGEPVLQADFVA--EVFRLAKEQGVHTALDTNG 4292 +D + + + ++GGEP+L A V + A +G ++TNG Sbjct: 70 VDAL-LPDTPLVISGGEPLLHQKHSAFQAVLQHAWRKGCEVHIETNG 115 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,010,682 Number of Sequences: 14420 Number of extensions: 852456 Number of successful extensions: 2373 Number of sequences better than 0.5: 15 Number of HSP's better than 0.5 without gapping: 2030 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2370 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 4016781183 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig164 (5463 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046798.1|Old 91 2e-18 ref|YP_025041.1|putative transposase B 88 8e-18 ref|NP_859396.1|hypothetical protein 87 2e-17 ref|NP_536395.1|ISBt3 transposase subunit protein 82 5e-16 ref|NP_958229.1|gene 55 protein 75 6e-14 ref|NP_058480.1|orf 41 42 5e-04 ref|YP_164705.1|orf70 41 0.002 ref|NP_620626.1|putative transposase 40 0.003 ref|NP_835534.1|hypothetical protein 33 0.25 >ref|NP_046798.1|Old Length = 586 Score = 90.5 bits (223), Expect = 2e-18 Identities = 111/459 (24%), Positives = 197/459 (42%), Gaps = 24/459 (5%) Frame = -1 Query: 3615 SNDLKNSLITSAILSAVRDINKELRINTWSWYGRLIRDIWENCNPSQKREIDKKLSEIKE 3436 SN + A+ AV D K T G+++ I + + K +SEI + Sbjct: 138 SNIFPEPIHIPAMSDAVEDSTKCKNTTT---IGKILSAIVSEIKQEHEEKFSKNISEIGK 194 Query: 3435 ITD-------DIFTNAASDIEEKIKKAIYHNSISFQLLQNTKDDIYKG--INIFVNDGVE 3283 + S + +K+ + S+ T D+I+K + +F + E Sbjct: 195 YLSHNGENRLESLNKIDSGVNKKVNQFFPDVSVKLHFPTPTLDEIFKSGTLKVFESREDE 254 Query: 3282 GLLEDK---GTGIQSAVVISLFSYYC------SKFHKNSSLLVVEEPEIYLHPQARRVVS 3130 ++ D G G Q ++ ++L Y S+ K+++L+ ++EPE+YLHP A ++ Sbjct: 255 PVMRDISRFGHGTQRSIQMALIQYLAEIKKENSESKKSNTLIFIDEPELYLHPSA---IN 311 Query: 3129 NKFDEFVNLNSTNRNQVIITTHSSEFIRNTDIGNIIVVKKVSGKTKTRRIQMETGKHKEL 2950 + + V L S + QVII+THS+ + N I V K S T R+ E K +EL Sbjct: 312 SVRESLVTL-SESGYQVIISTHSASMLSAKHAANAIQVCKDSNGTIARKTISE--KIEEL 368 Query: 2949 AK-----LQNIISTKNAE-IFFADKVILVEGGEEYLIPLIAEHYYQEKGFLDYNNISVAK 2788 K L + + N+ + F+++V+LVEG E + L A + L+ + I + Sbjct: 369 YKSSSPQLHSAFTLSNSSYLLFSEEVLLVEGKTETNV-LYALYKKINGHELNPSKICIVA 427 Query: 2787 VGGKSFFKPYMEVLSCLGIEYYVIADFDILHNGLEDIDEFINEFSQEELNDIRKSLNEII 2608 V GK ++++ +GI+ ++AD D L N L + E + E +++ +L E I Sbjct: 428 VDGKGSLFKMSQIINAIGIKTRILADCDFLSNIL--LTEH-KDLLSTECDNLLTALIESI 484 Query: 2607 PIDEPWIKSKDIREKLLKPDKSMDAKSLCTVIDEICATEEYNDKLKEIWQYVRPKVTKKV 2428 E + +K + K S D +C E + KLK+ Y+ + Sbjct: 485 NSGELSLNTKVTTFESFKSISSKDFIKICNHEKTQKHIHEIHQKLKDNGIYIWKSGDIEA 544 Query: 2427 NYRILENYEDIKTKVYNYIDKLKTSNIFILKKGELEDYI 2311 Y + + + + D+ K I K E+ED+I Sbjct: 545 VYGFGKKQTEWDSLLDCLCDESKDVRAVIKKYDEMEDFI 583 Score = 35.4 bits (80), Expect = 0.065 Identities = 20/45 (44%), Positives = 28/45 (62%) Frame = -1 Query: 4203 VSKLLIRNFRSIEKESIDFRPGKNVLVGKNNSGKSNIVKALDLVL 4069 ++ + I NFRS + S RP LVG NN+GKSNI+ A+ +L Sbjct: 5 LASVSISNFRSCKSTSAILRPF-TALVGYNNAGKSNIILAIKWLL 48 >ref|YP_025041.1|putative transposase B Length = 280 Score = 88.2 bits (217), Expect = 8e-18 Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 5/152 (3%) Frame = +1 Query: 40 WSIDVTYCRMKR-GFMYMVAIIDWYSRYIVGFELSNTLDKTFVIEAIQKAIKR--YGKPE 210 W+ D+TY + KR G+ Y+ I+D +SR I+G+ S +D V++ ++ A+K Sbjct: 117 WTADMTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDL 176 Query: 211 IMNSDQGSQFTSDDYINLLKNNGIKISMDGKGRALDNQRIERFFRSYKWEKLY-LEECET 387 I+++D GSQ+TSDDY L I+ S KG DN +E F S K E +Y + E Sbjct: 177 IIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFED 236 Query: 388 VQQLRQITKEYVE-HYNHRRPHQSLDYKTPAE 480 + + EYV YN +R H SL Y+TP + Sbjct: 237 YETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQ 268 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 87.0 bits (214), Expect = 2e-17 Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 6/164 (3%) Frame = +1 Query: 40 WSIDVTYCRMKRGFMYMVAIIDWYSRYIVGFELSNTLDKTFVIEAIQKAI-KRYGKPEIM 216 W D TY +GF+Y+ IID ++ YIVG+ +S++++ TFV++A+++A+ R I Sbjct: 133 WVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTIH 192 Query: 217 NSDQGSQFTSDDYINLLKNNGIKISMDGKGRALDNQRIERFFRSYKWEKLYLEECETVQQ 396 +SD+GSQ+ S Y LK G+ S G + DN E YK E ++ + + + Sbjct: 193 HSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAE 252 Query: 397 LRQITKEYVEHYNHRRPHQSLDYKTPAE----YYFG-GYDQLLA 513 + T +V+ YN+RR L + PAE YY G D L A Sbjct: 253 VELATLTWVDWYNNRRLLGRLGHTPPAEAEKAYYASIGNDDLAA 296 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 82.4 bits (202), Expect = 5e-16 Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 5/161 (3%) Frame = +1 Query: 40 WSIDVTYCRMKRGFMYMVAIIDWYSRYIVGFELSNTLDKTFVIEAIQKAIKRYGKPE--- 210 W D TY +G++Y+ +ID ++R IVG+ +S+++ FV++A+++A+ E Sbjct: 114 WVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSSSMTTDFVLDALEQALYARQPGEDGT 173 Query: 211 -IMNSDQGSQFTSDDYINLLKNNGIKISMDGKGRALDNQRIERFFRSYKWEKLYLE-ECE 384 I +SD+GSQ+ S Y L GI+ S+ +G + DN E YK E ++ + Sbjct: 174 LIHHSDRGSQYVSIRYSERLAEAGIEPSVGSRGDSYDNALAETINGLYKTELIHRRAPWK 233 Query: 385 TVQQLRQITKEYVEHYNHRRPHQSLDYKTPAEYYFGGYDQL 507 T + + T E+V YNH R + L Y PAE Y QL Sbjct: 234 TRESVELATLEWVAWYNHHRLMEPLGYIPPAEAEANYYRQL 274 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 75.5 bits (184), Expect = 6e-14 Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 6/144 (4%) Frame = +1 Query: 40 WSIDVTYCRMKRGFMYMVAIIDWYSRYIVGFELSNTLDKTFVIEAIQKAIKRYGKPE--I 213 W DVTY + + Y+ ++D ++R VG+ +S + D ++A++ A + GKP + Sbjct: 141 WCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVM 200 Query: 214 MNSDQGSQFTSDDYINLLKNNGIKISMDGKGRALDNQRIERFFRSYKWEKL----YLEEC 381 +SDQGS +TS + LL I+ SM +G DN +ERFFRS K E + Y+ Sbjct: 201 FHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFS 260 Query: 382 ETVQQLRQITKEYVEHYNHRRPHQ 453 E IT V +Y+ RPH+ Sbjct: 261 EAA---HAITDYIVGYYSALRPHE 281 >ref|NP_058480.1|orf 41 Length = 332 Score = 42.4 bits (98), Expect = 5e-04 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 9/77 (11%) Frame = -1 Query: 4218 RKDMFVSKLLIRNFRSIEKESIDFRPGKNVLVGKNNSGKSNIVKALDLVLGEK------- 4060 RKDM ++KL I NF I++ES +F + G N +GK+ AL +L +K Sbjct: 2 RKDMKINKLTISNFAGIKEESFNFNGKDAKIYGNNATGKTTTATALQWLLFDKGLDGSTK 61 Query: 4059 --NPVYLDINEKDFFTY 4015 NPV +NEK+ Y Sbjct: 62 SFNPV--SLNEKNEENY 76 >ref|YP_164705.1|orf70 Length = 638 Score = 40.8 bits (94), Expect = 0.002 Identities = 61/237 (25%), Positives = 94/237 (39%), Gaps = 50/237 (21%) Frame = -1 Query: 4209 MFVSKLLIRNFRSIEKESIDFR---PGKNVLVGKNNSGKSNIVKALDLVLGEK------- 4060 M + + IRNFRSI S+DF+ G ++ GKN GKS+I A+ L K Sbjct: 1 MKLETIKIRNFRSIR--SLDFKIDSRGLTLISGKNGQGKSSIYAAILYALFNKTQKGQTA 58 Query: 4059 NPVYLDINEKD---FFTY-----------YEDGNEKVKKAFFIAVKLE----GNDINEEL 3934 + + D+ +K+ Y Y E K F ++E N + +EL Sbjct: 59 DAIINDVAKKNTSVILNYENAGVRYRVCRYRKHKENHNKVLFYVNEVEKTSSSNKLTDEL 118 Query: 3933 FKSISGAWLAT------VGD--------------KNLIEDFFNTSKNPELLIKNFDTLSN 3814 ++ G T +GD K +IED N S + K ++++ Sbjct: 119 IEASVGMSFDTMLNSFVLGDSLVTNFSVSTDKQRKEIIEDITNIS-----IYKKASSVAS 173 Query: 3813 RKYCKDTEELFDIFRNAQELYIYF-SVMKNAEIENIDYDMDNQQGNYSK-TYSIFLK 3649 KY + E L + R L I S+ K E+E + NY+K +Y LK Sbjct: 174 DKYKEAKEVLDSVERTKSNLEIKVESLKKQLELEKSQEKQRKENINYAKNSYEASLK 230 >ref|NP_620626.1|putative transposase Length = 362 Score = 40.0 bits (92), Expect = 0.003 Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 17/150 (11%) Frame = +1 Query: 85 YMVAIIDWYSRYIVGFELSNTLDKTFVIEAIQKAIKRYGKP-----EIMNSDQGSQFTSD 249 Y+ ID +R +G+ + + L I+A++KAI + + +D GS+F ++ Sbjct: 206 YVYDFIDEKTRLALGY-VYDKLSTDNAIDAVKKAISDFKNIFGIIITRIRTDNGSEFINN 264 Query: 250 ------------DYINLLKNNGIKISMDGKGRALDNQRIERFFRSYKWEKLYLEECETVQ 393 ++ L + I N +IERF ++Y ++ E+ Sbjct: 265 YRNNQKISVKKTNFTQFLTDKNILHQTTPVRSPQSNGKIERFHQNYTKLFVFEEKILNAV 324 Query: 394 QLRQITKEYVEHYNHRRPHQSLDYKTPAEY 483 L+ +Y YN R H+SL+++TP + Sbjct: 325 SLQNKLNDYYYFYNFERVHKSLNFQTPFNF 354 >ref|NP_835534.1|hypothetical protein Length = 647 Score = 33.5 bits (75), Expect = 0.25 Identities = 21/62 (33%), Positives = 32/62 (51%) Frame = -1 Query: 4209 MFVSKLLIRNFRSIEKESIDFRPGKNVLVGKNNSGKSNIVKALDLVLGEKNPVYLDINEK 4030 M ++KL I NF I++E +F + G N +GK+ AL +L +K LD + K Sbjct: 1 MKINKLTISNFAGIKEEKFNFDGKDAKIYGNNATGKTTTATALQWLLFDKG---LDGSTK 57 Query: 4029 DF 4024 F Sbjct: 58 SF 59 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,471,112 Number of Sequences: 14420 Number of extensions: 470945 Number of successful extensions: 1407 Number of sequences better than 0.5: 9 Number of HSP's better than 0.5 without gapping: 1231 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1397 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2686867479 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig166 (9658 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_006911.1|Hypothetical protein 41 0.003 >ref|YP_006911.1|Hypothetical protein Length = 149 Score = 40.8 bits (94), Expect = 0.003 Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 11/150 (7%) Frame = +1 Query: 2620 SFSAREL--LARLIKCEAGGEGVDGMKAVATVVMNRVHASYGEYLRVCQGDLRKVIFQPR 2793 S A+E+ +A+ I E+ GEG+ GM AVA V NRV++ G++ KV++Q Sbjct: 20 SHDAKEIDCIAKNIYFESRGEGIKGMMAVAQVTKNRVNS--GKF----PDSYCKVVYQSN 73 Query: 2794 QFTCVMGKVYGEVNPQTIWSNPPEQIHYDVADWALAGNKLPGVGECLWYYN-PYSPTCSQ 2970 QF+ V S P+ D A W A N + ++Y + P PT Sbjct: 74 QFSWV--------------SKRPKVDKTDEA-WQTAKN----LARVIYYVDLPQDPTHGA 114 Query: 2971 YF------PPTGTGKF--VTRVNQHCFYRP 3036 + P T KF T++ H FY+P Sbjct: 115 LYFHSGKDKPYWTKKFKKTTKIKGHTFYKP 144 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,481,887 Number of Sequences: 14420 Number of extensions: 932905 Number of successful extensions: 2530 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 2148 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2529 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4686188793 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig167 (9351 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_043538.1|putative 35 0.11 ref|YP_164324.1|hypothetical protein 33 0.42 >ref|NP_043538.1|putative Length = 122 Score = 35.4 bits (80), Expect = 0.11 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 3/62 (4%) Frame = -3 Query: 6409 FKKDMEEFIKVLQQEISRAFE---SEDYERERAAIANEYQGKKAELMEILNRDAEKQGFK 6239 ++KDM ++ + + FE +ED+ + +I E++GKKAE+ E+ R K+ + Sbjct: 59 YEKDMGKYNDYIDMAVKMGFERSEAEDWVALQKSIFEEFKGKKAEIEELEKRKEMKENDE 118 Query: 6238 VR 6233 +R Sbjct: 119 IR 120 >ref|YP_164324.1|hypothetical protein Length = 1649 Score = 33.5 bits (75), Expect = 0.42 Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 2/141 (1%) Frame = -3 Query: 6730 LPAGMLRKECDPNSFKFNDTSELEPLEGIIGQERAVRAMTFGLKINTRGYNIFMSGMTGT 6551 + GM R D +K DT+ LE IG + A A G + + F + Sbjct: 1511 MATGMYR---DAKGYKVLDTNVLEAAMKSIGFQPASVATIQGANMLNQKAKAFYNLKAQE 1567 Query: 6550 GKTSYAVNYIKKIAKNCKTPDDWCYVYNFENPNQPKAINLPAGLGKVFKKDM--EEFIKV 6377 ++ +A +K + +N NP+QP AI +P + +V + + +E I Sbjct: 1568 IRSMWAAGIFEKDQGKVERARQAIADWNRRNPDQPMAIRVPDIMRRVREMSLSKDERIAK 1627 Query: 6376 LQQEISRAFESEDYERERAAI 6314 + R ED ER RA + Sbjct: 1628 TAPKAMRQQMREDLERTRATL 1648 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,500,639 Number of Sequences: 14420 Number of extensions: 1002100 Number of successful extensions: 2778 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 2322 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2777 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4532641971 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig168 (13,756 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_076827.1|Csp 73 7e-13 ref|NP_839934.1|putative tail lysin 35 0.21 ref|NP_510938.1|similar to phage B1 major head protein 34 0.35 ref|NP_076686.1|tail protein 34 0.35 >ref|NP_076827.1|Csp Length = 66 Score = 73.2 bits (178), Expect = 7e-13 Identities = 35/66 (53%), Positives = 41/66 (62%) Frame = -2 Query: 11832 MERGRVKWFNAEKGFGFIEREGGKDVFVHFSAINMDGYKTLXXXXXXXXXXXXXAKGPQA 11653 M G VKWFNA+KGFGFI E GKD+F HFSAI DG+K+L +G QA Sbjct: 1 MANGTVKWFNADKGFGFITSEEGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQA 60 Query: 11652 ANVTKA 11635 N+TKA Sbjct: 61 VNITKA 66 >ref|NP_839934.1|putative tail lysin Length = 1711 Score = 35.0 bits (79), Expect = 0.21 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = -1 Query: 7870 KSKLNLDKIIETVEKLDYKIKGVEDEKNAGYDKRENFAPENGSKT 7736 K KLN ++I+T+EK D + KGV+D+ D+ A E KT Sbjct: 1154 KGKLNQKQLIDTIEKADDEYKGVKDKAQKQKDEAVKAANEKYKKT 1198 >ref|NP_510938.1|similar to phage B1 major head protein Length = 274 Score = 34.3 bits (77), Expect = 0.35 Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 11/105 (10%) Frame = -2 Query: 5649 VQVGDIIVVRPGEKIPVD-----------GRIIEGNSSVDESMLTGESLPVEKKVGDFVT 5503 V GD VV GEKIP D +I +G S DE++L+G P ++V Sbjct: 55 VYSGDAQVVAEGEKIPTDILETKKREAKIRKIAKGTSITDEALLSGYGDPQGEQVRQHGL 114 Query: 5502 GATINKFGTFKFEATKVGKDTVLSQIIKMVEDAQGSKAPIQKIAD 5368 A NK EA K TV + I K+ G ++ I K D Sbjct: 115 -AHANKVDNDVLEALMGAKLTVNADITKL----NGLQSAIDKFND 154 >ref|NP_076686.1|tail protein Length = 1640 Score = 34.3 bits (77), Expect = 0.35 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = -1 Query: 7870 KSKLNLDKIIETVEKLDYKIKGVEDEKNAGYDKRENFAPENGSKT 7736 K KLN ++I+T+EK D + KGV+D+ D+ A E KT Sbjct: 1085 KGKLNQKQLIDTLEKADDEYKGVKDKAQKQKDEAVKAANEKYKKT 1129 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,070,802 Number of Sequences: 14420 Number of extensions: 1510929 Number of successful extensions: 3923 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 3043 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3920 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 6544364076 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig169 (6192 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_025041.1|putative transposase B 77 2e-14 ref|NP_859396.1|hypothetical protein 67 2e-11 ref|NP_536395.1|ISBt3 transposase subunit protein 64 1e-10 ref|NP_958229.1|gene 55 protein 59 5e-09 ref|NP_620626.1|putative transposase 46 4e-05 ref|YP_025040.1|putative transposase A 33 0.28 >ref|YP_025041.1|putative transposase B Length = 280 Score = 77.4 bits (189), Expect = 2e-14 Identities = 69/288 (23%), Positives = 125/288 (43%), Gaps = 15/288 (5%) Frame = -2 Query: 5771 RIVGLNRSTYYYNLSGLKDVKGKSTGRLIAGYSLNKKGYKVPDEQIKEYIIQITENKGAF 5592 RI+G++R+ YY S + + D +K+ I++I Sbjct: 3 RILGVSRAQYYRYRSPKPSKR------------------RAEDADLKQRILRIFAEFKQR 44 Query: 5591 YGYLKLTKSLR---RNFELNINKKKVYRLCKELNI---------LKPQRKTKLKH*KKIA 5448 YG +K+ L + +L + +++ RL KEL+I KTK++ + Sbjct: 45 YGVMKIHHELNLELQPLQLRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLL 104 Query: 5447 RNR-TVKASNQLWETDIKYGYISGENRFFYILSFIDVADRNIISHHIGLSCTGEDVSRTL 5271 + + NQ W D+ Y + N + Y+ + +D+ R II + + V +TL Sbjct: 105 KQDFSTTGLNQKWTADMTY-IQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTL 163 Query: 5270 KIVLLKRQLYEAENKPVIRSDNGPQFISEAFAKACESL*VEHERIPYKTPNMNEHIESYH 5091 + + R + +I +D G Q+ S+ + + L + H P N +ES+H Sbjct: 164 ESAVKNRTI---TGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFH 220 Query: 5090 RILEEECL-SINEFESFAEAYTIVNEFI-KLYNTKRIHSSTKYMPPAE 4953 L++EC+ + FE + A ++ E++ YN KRIHSS Y P + Sbjct: 221 ASLKKECVYPVPVFEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQ 268 Score = 71.6 bits (174), Expect = 9e-13 Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 4/128 (3%) Frame = +1 Query: 31 HSRYIVGFELSNTLDKTFVIEAIQKAIKR--YGKPEIMNSDQGSQFTSDDYINLLKNNGI 204 HSR I+G+ S +D V++ ++ A+K I+++D GSQ+TSDDY L I Sbjct: 141 HSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIHTDLGSQYTSDDYNQRLTELHI 200 Query: 205 KISMDGKGRALDNQRIERFFRSYKWEKLY-LEECETVQQLRQITKEYVE-HYNHRRPHQS 378 + S KG DN +E F S K E +Y + E + + EYV YN +R H S Sbjct: 201 RHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAFYNRKRIHSS 260 Query: 379 LDYKTPAE 402 L Y+TP + Sbjct: 261 LGYQTPLQ 268 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 67.0 bits (162), Expect = 2e-11 Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 6/138 (4%) Frame = +1 Query: 40 YIVGFELSNTLDKTFVIEAIQKAI-KRYGKPEIMNSDQGSQFTSDDYINLLKNNGIKISM 216 YIVG+ +S++++ TFV++A+++A+ R I +SD+GSQ+ S Y LK G+ S Sbjct: 159 YIVGWRVSSSMETTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLAST 218 Query: 217 DGKGRALDNQRIERFFRSYKWEKLYLEECETVQQLRQITKEYVEHYNHRRPHQSLDYKTP 396 G + DN E YK E ++ + + ++ T +V+ YN+RR L + P Sbjct: 219 GSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPP 278 Query: 397 AE----YYFG-GYDQLLA 435 AE YY G D L A Sbjct: 279 AEAEKAYYASIGNDDLAA 296 Score = 45.1 bits (105), Expect = 9e-05 Identities = 50/240 (20%), Positives = 95/240 (39%), Gaps = 9/240 (3%) Frame = -2 Query: 5645 DEQIKEYIIQITENKGAFYGYLKLTKSLRRNFELNINKKKVYRLCKELNILKPQRKTKLK 5466 D+ +K I ++ + YG K+ + L R + + + V RL + + R K++ Sbjct: 48 DDWLKREIQRVYDENHQVYGVRKVWRQLLRE-GIRVARCTVARLMAVMGLAGVLRGKKVR 106 Query: 5465 H*---------KKIARNRTVKASNQLWETDIKYGYISGENRFFYILSFIDVADRNIISHH 5313 ++ R + +QLW D + Y+S F Y+ IDV I+ Sbjct: 107 TTISRKAVAAGDRVNRQFVAERPDQLWVAD--FTYVSTWQGFVYVAFIIDVFAGYIVGWR 164 Query: 5312 IGLSCTGEDVSRTLKIVLLKRQLYEAENKPVIRSDNGPQFISEAFAKACESL*VEHERIP 5133 + S V L+ L R+ + + SD G Q++S A+ + + + Sbjct: 165 VSSSMETTFVLDALEQALWARR----PSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGS 220 Query: 5132 YKTPNMNEHIESYHRILEEECLSINEFESFAEAYTIVNEFIKLYNTKRIHSSTKYMPPAE 4953 N ES + + + E + +++ AE ++ YN +R+ + PPAE Sbjct: 221 TGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAE 280 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 64.3 bits (155), Expect = 1e-10 Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Frame = +1 Query: 34 SRYIVGFELSNTLDKTFVIEAIQKAIKRYGKPE----IMNSDQGSQFTSDDYINLLKNNG 201 +R IVG+ +S+++ FV++A+++A+ E I +SD+GSQ+ S Y L G Sbjct: 138 ARRIVGWRVSSSMTTDFVLDALEQALYARQPGEDGTLIHHSDRGSQYVSIRYSERLAEAG 197 Query: 202 IKISMDGKGRALDNQRIERFFRSYKWEKLYLE-ECETVQQLRQITKEYVEHYNHRRPHQS 378 I+ S+ +G + DN E YK E ++ +T + + T E+V YNH R + Sbjct: 198 IEPSVGSRGDSYDNALAETINGLYKTELIHRRAPWKTRESVELATLEWVAWYNHHRLMEP 257 Query: 379 LDYKTPAEYYFGGYDQL 429 L Y PAE Y QL Sbjct: 258 LGYIPPAEAEANYYRQL 274 Score = 51.6 bits (122), Expect = 1e-06 Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 17/187 (9%) Frame = -2 Query: 5444 NRTVKAS--NQLWETDIKYGYISGENRFFYILSFIDVADRNIISHHIGLSCTGEDVSRTL 5271 NR KA NQLW +D + Y+S + Y+ IDV R I+ + S T + V L Sbjct: 102 NRQFKADRPNQLWVSD--FTYVSTWQGWLYVAFVIDVFARRIVGWRVSSSMTTDFVLDAL 159 Query: 5270 KIVLLKRQLYEAENKPVIRSDNGPQFISEAFAKACESL*VEHERIPYKTPNMNEHIESYH 5091 + L RQ E + + SD G Q++S +++ +E P++ +SY Sbjct: 160 EQALYARQPGE-DGTLIHHSDRGSQYVSIRYSERLAEAGIE--------PSVGSRGDSYD 210 Query: 5090 RILEEECLSINEFE-----------SFAEAYTIVNEFIKLYNTKRIHSSTKYMPPAE--- 4953 L E + + E E T+ E++ YN R+ Y+PPAE Sbjct: 211 NALAETINGLYKTELIHRRAPWKTRESVELATL--EWVAWYNHHRLMEPLGYIPPAEAEA 268 Query: 4952 -FYEHLR 4935 +Y LR Sbjct: 269 NYYRQLR 275 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 59.3 bits (142), Expect = 5e-09 Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 6/120 (5%) Frame = +1 Query: 34 SRYIVGFELSNTLDKTFVIEAIQKAIKRYGKPE--IMNSDQGSQFTSDDYINLLKNNGIK 207 +R VG+ +S + D ++A++ A + GKP + +SDQGS +TS + LL I+ Sbjct: 165 ARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIR 224 Query: 208 ISMDGKGRALDNQRIERFFRSYKWEKL----YLEECETVQQLRQITKEYVEHYNHRRPHQ 375 SM +G DN +ERFFRS K E + Y+ E IT V +Y+ RPH+ Sbjct: 225 QSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAA---HAITDYIVGYYSALRPHE 281 >ref|NP_620626.1|putative transposase Length = 362 Score = 46.2 bits (108), Expect = 4e-05 Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 25/208 (12%) Frame = -2 Query: 5480 KTKLKH*KKIARNRTVKASNQLWETDIKYGYIS--GENRFFYILSFIDVADRNIISHHIG 5307 K K+K KK VK L + D KY S ++ +Y+ FID R + Sbjct: 166 KNKIKEIKKQHSRYEVKEIGLL-QMDAKYFVPSKFSVDKKYYVYDFIDEKTR------LA 218 Query: 5306 LSCTGEDVSRTLKIVLLKRQLYEAENK-----PVIRSDNGPQFISEA------------F 5178 L + +S I +K+ + + +N IR+DNG +FI+ F Sbjct: 219 LGYVYDKLSTDNAIDAVKKAISDFKNIFGIIITRIRTDNGSEFINNYRNNQKISVKKTNF 278 Query: 5177 AKACESL*VEHERIPYKTPNMNEHIESYHR------ILEEECLSINEFESFAEAYTIVNE 5016 + + H+ P ++P N IE +H+ + EE+ L+ ++ +N+ Sbjct: 279 TQFLTDKNILHQTTPVRSPQSNGKIERFHQNYTKLFVFEEKILNAVSLQNK------LND 332 Query: 5015 FIKLYNTKRIHSSTKYMPPAEFYEHLRI 4932 + YN +R+H S + P F L + Sbjct: 333 YYYFYNFERVHKSLNFQTPFNFLNSLSL 360 Score = 36.2 bits (82), Expect = 0.043 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 17/123 (13%) Frame = +1 Query: 88 IEAIQKAIKRYGKP-----EIMNSDQGSQFTSD------------DYINLLKNNGIKISM 216 I+A++KAI + + +D GS+F ++ ++ L + I Sbjct: 232 IDAVKKAISDFKNIFGIIITRIRTDNGSEFINNYRNNQKISVKKTNFTQFLTDKNILHQT 291 Query: 217 DGKGRALDNQRIERFFRSYKWEKLYLEECETVQQLRQITKEYVEHYNHRRPHQSLDYKTP 396 N +IERF ++Y ++ E+ L+ +Y YN R H+SL+++TP Sbjct: 292 TPVRSPQSNGKIERFHQNYTKLFVFEEKILNAVSLQNKLNDYYYFYNFERVHKSLNFQTP 351 Query: 397 AEY 405 + Sbjct: 352 FNF 354 >ref|YP_025040.1|putative transposase A Length = 83 Score = 33.5 bits (75), Expect = 0.28 Identities = 13/39 (33%), Positives = 26/39 (66%) Frame = -2 Query: 6065 KYTQEFKESIVKAAIETGNAALITRQHGISKELVYRWIR 5949 +Y +EFK++I+ + +AA + R++GI V++WI+ Sbjct: 4 RYDKEFKQNIINLYKQGESAAQMAREYGIGYSTVHKWIQ 42 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,650,921 Number of Sequences: 14420 Number of extensions: 616865 Number of successful extensions: 1546 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 1364 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1539 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 3036845781 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig170 (13,280 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_612844.1|Gp15 protein 97 6e-20 ref|NP_046584.1|putative transglycosylase 84 4e-16 ref|NP_112710.1|ORF47 82 1e-15 ref|NP_076626.1|endopeptidase 82 1e-15 ref|NP_695158.1|minor capsid protein 82 2e-15 ref|NP_663686.1|structural protein 81 2e-15 ref|NP_108727.1|minor structural protein 3 79 9e-15 ref|NP_943827.1|gp49 74 5e-13 ref|NP_046572.1|ABC transporter 70 6e-12 ref|NP_058454.1|orf 16 69 2e-11 ref|NP_803396.1|tail length tape measure protein 67 5e-11 ref|NP_061640.1|phi PVL ORF 15 and 16 homologue 67 6e-11 ref|NP_835564.1|hypothetical protein 63 7e-10 ref|NP_958615.1|77ORF001 63 7e-10 ref|YP_195243.1|hypothetical protein 59 1e-08 ref|NP_803346.1|tail fiber protein 52 2e-06 ref|NP_075512.2|hypothetical protein 50 5e-06 ref|NP_777327.1|hypothetical protein 49 1e-05 ref|NP_061643.1|phi PVL ORF 20 and 21 homologue 37 0.053 ref|NP_835566.1|hypothetical protein 36 0.090 ref|NP_803398.1|structural protein 36 0.090 ref|NP_058458.1|orf 20 36 0.090 ref|NP_852592.1|prohead protease 36 0.090 ref|NP_690647.1|morphogenesis protein 36 0.090 ref|NP_958617.1|77ORF002 36 0.12 ref|NP_758934.1|ORF43 35 0.20 ref|NP_049948.1|Hypothetical protein 35 0.20 ref|YP_003919.1|putative tail fiber 34 0.34 ref|NP_944863.1|unknown 34 0.34 >ref|NP_612844.1|Gp15 protein Length = 983 Score = 96.7 bits (239), Expect = 6e-20 Identities = 78/234 (33%), Positives = 110/234 (47%), Gaps = 7/234 (2%) Frame = +3 Query: 1749 IAVNNQQMNLITEREEIIQSYIRKVEEQDKLIKNFTTLYRDMTAKYIDGSMENVTASR-- 1922 I NN N I R ++YIR + E+ + +D ++G A Sbjct: 756 ILANNSLTNAIM-RNPNDEAYIRPIWEK--------FIIKDAAGNILNGLKARRKAECDI 806 Query: 1923 --SGLRDDRAFINDINKLKGILDKLEEINGDDADILSSLSETQSKLKQYIDSIPTLW--P 2090 SG+ + R + IN + E NGD L S++E + + T W P Sbjct: 807 YFSGIYEKRPILT-INSNGSYGSPVTENNGDGW--LPSVTENYKTVN---NDYGTGWVIP 860 Query: 2091 ASGRISSRFGTRSDPFNFSQKVHEGIDIAADYGTTILASATGKVTLS-DWYGNYGKCVII 2267 +G I++ F T S H+GID GT + S G V + +YGK + + Sbjct: 861 TTGTITATFPTYP-----SGGKHDGIDFGTPIGTPVRVSKDGVVIKRRELTTSYGKYLFV 915 Query: 2268 DHGYGLSTLYGHCQTLLVKEGQTVKKGDKIATVGSTGRSTGPHLHFEVRLNGVP 2429 DHG GL T+Y H LLV EG VK+G IA G+TG STGPHLH+E+R+NG+P Sbjct: 916 DHGGGLITIYAHNSELLVNEGDRVKRGQIIAKTGNTGNSTGPHLHWELRVNGIP 969 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 84.0 bits (206), Expect = 4e-16 Identities = 53/147 (36%), Positives = 75/147 (51%), Gaps = 1/147 (0%) Frame = +3 Query: 2013 ADILSSLSETQSKLKQYIDSIPTLWPASGRISSRFGTRSDPFNFSQKVHEGIDIAADYGT 2192 A+ SLS S + Y + ++ R+SS++G + S H+G D AA GT Sbjct: 1539 ANYSKSLSSATSSIASYYTN-----NSAFRVSSKYGQQESGLRSSP--HKGTDFAAKAGT 1591 Query: 2193 TILASATGKVTLSDWYGNYGKCVIIDHGYGLSTLYGHC-QTLLVKEGQTVKKGDKIATVG 2369 I + +GKV ++ + G V+I G Y H T VK GQ+VK G I VG Sbjct: 1592 AIKSLQSGKVQIAGYSKTAGNWVVIKQDDGTVAKYMHMLNTPSVKAGQSVKAGQTIGKVG 1651 Query: 2370 STGRSTGPHLHFEVRLNGVPVDPLQYL 2450 STG STG HLH ++ NG +DP +Y+ Sbjct: 1652 STGNSTGNHLHLQIEQNGKTIDPEKYM 1678 Score = 33.9 bits (76), Expect = 0.45 Identities = 32/145 (22%), Positives = 71/145 (48%), Gaps = 21/145 (14%) Frame = +3 Query: 1713 ENRV-LNEDRKKVIAVNNQQMNLITEREEIIQSYIRKVEEQDKLIKNFTTLYRDMTA--- 1880 +N++ + E+ + + ++Q+ LI ++++ + YI+++EEQ K K F + +T Sbjct: 1858 DNKISMTEEDEDKVKYYSKQIKLIQQQQKEAKKYIKQLEEQKKAAKGFPDIQEQITEEMQ 1917 Query: 1881 ----KYIDGSMENVTASRSGLRDDRAFIND--INKLKGILDKLEEINGD-----DADILS 2027 K D ++E +S ++D + D ++ K + +K+ +I + D++ Sbjct: 1918 NWKDKQKDFNLELYNTKKS-IKDIYKSLADEVVSIYKEMYEKMRDIELEAHQKATQDLID 1976 Query: 2028 SLSET------QSKLKQYIDSIPTL 2084 + +T Q +LK+ DSI L Sbjct: 1977 EIDKTDDEAKFQKELKERQDSIQKL 2001 >ref|NP_112710.1|ORF47 Length = 918 Score = 82.0 bits (201), Expect = 1e-15 Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Frame = +3 Query: 2103 ISSRFGTRSDPFNFSQKVHEGIDIAADYGTT-ILASATGKVTLS-----DWYGNYGKCVI 2264 ++S G R+ P +Q+ H +D+ TT ILAS G+V + DWYGNY + Sbjct: 792 VTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASGDGQVVQAGSNYYDWYGNY---TV 848 Query: 2265 IDHGYGLSTLYGHCQTLLVKEGQTVKKGDKIATVGSTGRSTGPHLHFE 2408 I H GL T Y H + V GQ VKKG +I +G+TG TGPHLHF+ Sbjct: 849 IKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQ 896 >ref|NP_076626.1|endopeptidase Length = 894 Score = 82.0 bits (201), Expect = 1e-15 Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Frame = +3 Query: 2103 ISSRFGTRSDPFNFSQKVHEGIDIAADYGTT-ILASATGKVTLS-----DWYGNYGKCVI 2264 ++S G R+ P +Q+ H +D+ TT ILAS G+V + DWYGNY + Sbjct: 768 VTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASGDGQVVQAGSNYYDWYGNY---TV 824 Query: 2265 IDHGYGLSTLYGHCQTLLVKEGQTVKKGDKIATVGSTGRSTGPHLHFE 2408 I H GL T Y H + V GQ VKKG +I +G+TG TGPHLHF+ Sbjct: 825 IKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQ 872 >ref|NP_695158.1|minor capsid protein Length = 1608 Score = 81.6 bits (200), Expect = 2e-15 Identities = 68/205 (33%), Positives = 100/205 (48%), Gaps = 16/205 (7%) Frame = +3 Query: 1881 KYIDGSMENVTASRSGLRDDRAFINDINKLKGILDKLEEING------DDADILSSLSET 2042 K +G+ + V+ SG+ + A I KL L+ G D+ I +++ Sbjct: 1158 KGAEGAADLVSEGASGVVNKIANATGIGKLAKTLNDNTTAFGAIASGAKDSLIDNAVKYV 1217 Query: 2043 QSKLKQYIDSIP----TLWPASG---RISSRFGTRSDPFNFSQKVHEGIDIAADYGTTIL 2201 Q Q+ D+ +L P G + SS +G R+ F H+GID AA GT I Sbjct: 1218 QGFFDQFSDTSEDGAGSLAPHFGSPFKESSGYGPRAGGF------HKGIDFAAPLGTPIP 1271 Query: 2202 ASATGKVTLSDWYGNYGKCVIID-HGYGLSTLYGHCQTLLVKEGQTVKKGDKIATVGSTG 2378 A G V + +G V+I G + T+YGH + + VK GQ VK G IA VGS G Sbjct: 1272 AQYGGTVVQAGPASGFGNWVVIKPSGASVDTIYGHMKRMKVKTGQHVKAGQIIAWVGSEG 1331 Query: 2379 RSTGPHLHFEVR--LNGVPVDPLQY 2447 +S+GPH+H+E+R L G +P+ Y Sbjct: 1332 QSSGPHVHYELRAGLGGKSYNPMTY 1356 >ref|NP_663686.1|structural protein Length = 908 Score = 81.3 bits (199), Expect = 2e-15 Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Frame = +3 Query: 2103 ISSRFGTRSDPFNFSQKVHEGIDIAADYGTT-ILASATGKVTLS-----DWYGNYGKCVI 2264 ++S G R+ P +Q+ H +D+ TT ILAS G+V + DWYGNY + Sbjct: 782 VTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASNDGQVVQAGSNYYDWYGNY---TV 838 Query: 2265 IDHGYGLSTLYGHCQTLLVKEGQTVKKGDKIATVGSTGRSTGPHLHFE 2408 I H GL T Y H + V GQ VKKG +I +G+TG TGPHLHF+ Sbjct: 839 IKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQ 886 >ref|NP_108727.1|minor structural protein 3 Length = 906 Score = 79.3 bits (194), Expect = 9e-15 Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Frame = +3 Query: 2103 ISSRFGTRSDPFNFSQKVHEGIDIAADYGTT-ILASATGKVTLS-----DWYGNYGKCVI 2264 ++S G R+ P +Q+ H +D+ TT ILAS G+V + +WYGNY + Sbjct: 780 VTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASNDGQVVQAGSNYYNWYGNY---TV 836 Query: 2265 IDHGYGLSTLYGHCQTLLVKEGQTVKKGDKIATVGSTGRSTGPHLHFE 2408 I H GL T Y H + V GQ VKKG +I +G+TG TGPHLHF+ Sbjct: 837 IKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQ 884 >ref|NP_943827.1|gp49 Length = 429 Score = 73.6 bits (179), Expect = 5e-13 Identities = 49/128 (38%), Positives = 66/128 (51%), Gaps = 10/128 (7%) Frame = +3 Query: 2103 ISSRFGTRSDPFNFSQKVHEGIDIAADYGTTILASATGKVTLSDWYGNYGKCVIIDHGY- 2279 +SS FG R H G+D AA GT I A+ G V +G+ ++IDH Sbjct: 8 LSSGFGPRWG------SQHRGLDFAAKDGTPIYAAQGGTVAYIGRADGFGQWIVIDHPAA 61 Query: 2280 --GLSTLYGHCQTLL---VKEGQTVKKGDKIATVGSTGRSTGPHLHFEVR----LNGVPV 2432 G +T+YGH +++GQ V+ G IA VG+ G+STGPHLHFEV G + Sbjct: 62 DGGGTTVYGHMWDAFATGLRQGQRVEAGQLIAYVGTNGQSTGPHLHFEVHPTVWRQGSQI 121 Query: 2433 DPLQYLDN 2456 DP +L N Sbjct: 122 DPKPWLAN 129 >ref|NP_046572.1|ABC transporter Length = 705 Score = 70.1 bits (170), Expect = 6e-12 Identities = 59/228 (25%), Positives = 119/228 (52%), Gaps = 6/228 (2%) Frame = -1 Query: 9938 DIDMIIEVKDVNKVYKNGKIEVRAL-NKVNLSVERGEFVSIMGPSGSGKSTLMNILGCLD 9762 ++D I +K VN G +R + +NL ++R + V I+G SG+GKST L L Sbjct: 476 ELDFIQNIKTVN--LNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLY 533 Query: 9761 RATSGKYILDGMDVSNLNDVELARIRNLKIGFVFQSFNLLPRMTALRNVELPMIYAKVNA 9582 + L+G+D++ + + + + +I ++ ++ L + T N+ + I+ + Sbjct: 534 KVPDKSIYLNGLDINRYDHLSIRK----RIVYIDEN-PFLFKGTIKENLCMGEIFDQNEI 588 Query: 9581 KERKRRAEMALERVGLKDRMNHKPNE----MSGGQKQRVAIARALVNDPAIILADEPTGN 9414 + ++ L + ++K +E +S GQKQR+A+ARA+++ P +++ DE N Sbjct: 589 ENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSN 648 Query: 9413 LDSYSGEEIMDLFQELNREGVTIILVTH-EPDIAQHTKRIVTFRDGHL 9273 +D + +++ L+R IIL+TH +P ++ K++V FR+ + Sbjct: 649 IDP---DNTKLIYETLHRMDCLIILITHNDPSNFKYNKKLV-FRNNRI 692 >ref|NP_058454.1|orf 16 Length = 539 Score = 68.6 bits (166), Expect = 2e-11 Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 1/99 (1%) Frame = +3 Query: 2157 HEGIDIAADYGTTILASATGKVTLSDWY-GNYGKCVIIDHGYGLSTLYGHCQTLLVKEGQ 2333 HEG+D Y + ++ G+ + ++ G YGK V I G L +Y H VK GQ Sbjct: 414 HEGLDFDYIY-EPVPSTINGRAQVMPFHNGGYGKWVKIVKG-ALEVIYAHLSKYKVKTGQ 471 Query: 2334 TVKKGDKIATVGSTGRSTGPHLHFEVRLNGVPVDPLQYL 2450 V+ G + G+TG STGPHLH+E+R NG DPL +L Sbjct: 472 QVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPLPWL 510 >ref|NP_803396.1|tail length tape measure protein Length = 1550 Score = 67.0 bits (162), Expect = 5e-11 Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Frame = +3 Query: 2157 HEGIDIAADYGTTILASATGKVTLSDWY-GNYGKCVIIDHGYGLSTLYGHCQTLLVKEGQ 2333 HEG+D Y + ++ G+ + + G YGK V I G L +Y H VK GQ Sbjct: 1189 HEGLDFDYIY-EPVPSTINGRAQVMPVHNGGYGKWVKIVKG-ALEVIYAHLSKYKVKTGQ 1246 Query: 2334 TVKKGDKIATVGSTGRSTGPHLHFEVRLNGVPVDPLQYL 2450 V+ G + G+TG STGPHLH+E+R NG DPL +L Sbjct: 1247 QVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPLPWL 1285 >ref|NP_061640.1|phi PVL ORF 15 and 16 homologue Length = 1313 Score = 66.6 bits (161), Expect = 6e-11 Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Frame = +3 Query: 2157 HEGIDIAADYGTTILASATGKVTLSDWY-GNYGKCVIIDHGYGLSTLYGHCQTLLVKEGQ 2333 HEG+D Y + ++ G+ + ++ G YGK V I G L +Y H VK G Sbjct: 1188 HEGLDFDYIY-EPVPSTINGRAQVMPFHNGGYGKWVKIVKG-ALEVIYAHLSKYKVKTGH 1245 Query: 2334 TVKKGDKIATVGSTGRSTGPHLHFEVRLNGVPVDPLQYL 2450 V+ G + G+TG STGPHLH+E+R NG DPL +L Sbjct: 1246 QVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPLPWL 1284 >ref|NP_835564.1|hypothetical protein Length = 1509 Score = 63.2 bits (152), Expect = 7e-10 Identities = 49/138 (35%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Frame = +3 Query: 2097 GRISSRFGTRSDPFNFSQKVHEGIDIAADYGTTILASATGKVTLSDWY-GNYGKCVIIDH 2273 GR ++ PF HEG+D Y + G++T + G YG V I Sbjct: 1130 GRTAAYTAATGRPF------HEGVDFPFVY-QEVRTPMGGRLTRMPFMSGGYGNYVKITS 1182 Query: 2274 GYGLSTLYGHCQTLLVK--EGQTVKKGDKIATVGSTGRSTGPHLHFEVRLNGVPVDPLQY 2447 G + L+ H + G VK GD + G+TG STGPHLHFE+R NG DP Y Sbjct: 1183 GV-IDMLFAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPHLHFEMRRNGRHFDPEPY 1241 Query: 2448 LDNK*GIK*QVVKGRLSM 2501 L N KGRLS+ Sbjct: 1242 LRN------AKKKGRLSI 1253 >ref|NP_958615.1|77ORF001 Length = 1509 Score = 63.2 bits (152), Expect = 7e-10 Identities = 49/138 (35%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Frame = +3 Query: 2097 GRISSRFGTRSDPFNFSQKVHEGIDIAADYGTTILASATGKVTLSDWY-GNYGKCVIIDH 2273 GR ++ PF HEG+D Y + G++T + G YG V I Sbjct: 1130 GRTAAYTAATGRPF------HEGVDFPFVY-QEVRTPMGGRLTRMPFMSGGYGNYVKITS 1182 Query: 2274 GYGLSTLYGHCQTLLVK--EGQTVKKGDKIATVGSTGRSTGPHLHFEVRLNGVPVDPLQY 2447 G + L+ H + G VK GD + G+TG STGPHLHFE+R NG DP Y Sbjct: 1183 GV-IDMLFAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPHLHFEMRRNGRHFDPEPY 1241 Query: 2448 LDNK*GIK*QVVKGRLSM 2501 L N KGRLS+ Sbjct: 1242 LRN------AKKKGRLSI 1253 >ref|YP_195243.1|hypothetical protein Length = 749 Score = 58.9 bits (141), Expect = 1e-08 Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 8/111 (7%) Frame = +3 Query: 2100 RISSRFGTRSDPFNFSQKVHEGIDIAADYGTTILASATGKV--TLSDWYGNYGKCVIIDH 2273 +I+SRFG R+ P H GID GT + G+V + GN G+ I+ H Sbjct: 542 QITSRFGRRASPGGVGSTNHMGIDYGTPQGTKLAIKKPGRVQKIVVPAPGNMGEVHIV-H 600 Query: 2274 GYGLSTLYGHCQTLLVKEGQTVKKGDKIATVG------STGRSTGPHLHFE 2408 G T Y H + V++G V G + G G STGPHLHFE Sbjct: 601 DDGTETRYLHLSKVAVRQGAQVVAGTLLGETGGEPGTPGAGPSTGPHLHFE 651 >ref|NP_803346.1|tail fiber protein Length = 2066 Score = 51.6 bits (122), Expect = 2e-06 Identities = 38/112 (33%), Positives = 49/112 (43%), Gaps = 3/112 (2%) Frame = +3 Query: 2103 ISSRFGTRSDPFNFSQKVHEGIDIAADYGTTILASATGKVTLSDW--YGNYGKCVIIDHG 2276 I RFG+ + NF+ H GID GT I A G + W YG G + I G Sbjct: 1689 IWQRFGSYTGGLNFNGGRHYGIDFGMPTGTNIYA-VKGGIADKVWTDYGG-GNSIQIKTG 1746 Query: 2277 YGLSTLYGHCQTLLVKEGQTVKKGDKIATVGSTGRST-GPHLHFEVRLNGVP 2429 Y H L ++GQ +K G I G+TG G HLHF++ P Sbjct: 1747 ANEWNWYMHLSKQLARQGQRIKAGQLIGKSGATGNFVRGAHLHFQLMQGSHP 1798 >ref|NP_075512.2|hypothetical protein Length = 2067 Score = 50.4 bits (119), Expect = 5e-06 Identities = 37/112 (33%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Frame = +3 Query: 2103 ISSRFGTRSDPFNFSQKVHEGIDIAADYGTTILASATGKVTLSDW--YGNYGKCVIIDHG 2276 I RFG + NF+ H GID GT + A G + W YG G + I G Sbjct: 1690 IWQRFGRYTGGLNFNGGRHYGIDFGMPSGTNVYA-VKGGIADKVWTDYGG-GNSIQIKTG 1747 Query: 2277 YGLSTLYGHCQTLLVKEGQTVKKGDKIATVGSTGRST-GPHLHFEVRLNGVP 2429 Y H L ++GQ +K G I G+TG G HLHF++ P Sbjct: 1748 ANEWNWYMHLSKQLARQGQRIKAGQLIGKSGATGNFVRGAHLHFQLMQGSHP 1799 >ref|NP_777327.1|hypothetical protein Length = 196 Score = 49.3 bits (116), Expect = 1e-05 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 7/98 (7%) Frame = +3 Query: 2157 HEGIDIAA------DYGTTILASATGKVTLSDWYGNYGKCVIIDH-GYGLSTLYGHCQTL 2315 H G+D+ D G + A G+V ++ + +G V++ H G+ T YGH + + Sbjct: 50 HTGVDLNGPGGGDTDCGQPVHAMTDGRVVIAGRFPVWGGMVVLWHPSAGVWTRYGHLRDI 109 Query: 2316 LVKEGQTVKKGDKIATVGSTGRSTGPHLHFEVRLNGVP 2429 LV G V G +I T+G HLHF+V + P Sbjct: 110 LVHPGDVVVAGQQIGTIGKMTTGGYCHLHFDVFIRVPP 147 >ref|NP_061643.1|phi PVL ORF 20 and 21 homologue Length = 1261 Score = 37.0 bits (84), Expect = 0.053 Identities = 50/262 (19%), Positives = 107/262 (40%), Gaps = 40/262 (15%) Frame = -3 Query: 8955 LVEKYQKVSKGQQLVEFDIEDMET--------ELEKLKINKKVQELSQNSPTVDAEIKR- 8803 +VE+ + ++ +I+D T E +K + ++ +LS N+P + A I++ Sbjct: 616 IVERLDTAEAERTTLKGEIKDKVTLNEYRNGLEEQKQYTDDQLSDLS-NNPEIKASIEQA 674 Query: 8802 ---AESAVKS------------------------AEQALSDAEKKYEDSKKLFEAQA--I 8710 A+ A+KS ++A+ DA+ K E++K+ E +A + Sbjct: 675 NQEAQEALKSYIDAQDDLKEKESQAYIDGKISEEEQRAIQDAQAKLEEAKQNAELKARNV 734 Query: 8709 SKSELDMAENAVRDARTALENATVAYNAAV--ESKDVDQKVKKENLNALILSISDLEKKI 8536 K +N V+++ A Y + + K++ + KE NA ++S++ +I Sbjct: 735 EKKAHAYTDNKVKESTDAQRKTLTRYGSQIIQNGKEIKSRTTKEEFNATNRTLSNILAEI 794 Query: 8535 QKTKESMFCPFDGIVTEINIQEGAYTSNMQPAFRIVNLDKLKVKAMVNEYNIKDVKVGQK 8356 + DG + A N+ P +N DK+ D+ ++ Sbjct: 795 VQNVT------DGTTIRYDDNGVAQALNIGPQGIRLNADKI------------DISGNRE 836 Query: 8355 VRITGDAIREDVEVFGVVESIS 8290 + + +R+ V+ +V S++ Sbjct: 837 INLLIQNMRDKVDKTDIVNSLN 858 >ref|NP_835566.1|hypothetical protein Length = 1260 Score = 36.2 bits (82), Expect = 0.090 Identities = 72/317 (22%), Positives = 143/317 (45%), Gaps = 14/317 (4%) Frame = -3 Query: 8955 LVEKYQKVSKGQQLVEFDIEDMET--------ELEKLKINKKVQELSQNSPTVDAEIKRA 8800 +VE+ + ++ +I+D T E +K + ++ +LS N+P + A I++A Sbjct: 616 IVERLDTAEAERTTLKGEIKDKVTLNEYRNGLEEQKQYTDDQLSDLS-NNPEIKASIEQA 674 Query: 8799 ESAVKSAEQALSDAEKKYEDSKKLFEAQAISKSELDMAE-NAVRDARTALENATVAYNAA 8623 + A ++ DA +D K E+QA + ++ E A++DA+ LE A NA Sbjct: 675 NQEAQEALKSYIDA----QDDLKEKESQAYADGKISEEEQRAIQDAQAKLEEA--KQNAE 728 Query: 8622 VESKDVDQKVKKENLNALILSISDLEKKIQKTKESMFCPFDGIVTEINIQEGAYTSNMQP 8443 +++++ ++K N + +D ++K S +G ++ + + ++ + Sbjct: 729 LKARNAEKKANAYTDNK-VKESTDAQRKTLTRYGSQIIQ-NGKEIKLRTTKEEFNASKRT 786 Query: 8442 AFRIVNLDKLKVKAMVNEYNIKDVKVGQKVRITGDAIRED-VEVFGVVESISPVAKTNMT 8266 R+ L + V AM Y ++ + IT I +D V++ G K ++T Sbjct: 787 LSRL--LADITVNAMKGIY----LRYDENGAITSHTIDKDGVKISG--------DKVDIT 832 Query: 8265 ASGEEVVIEVDISIDNTALNLKPGLS--VDCEILTDEKKDVVVVPMGVLKTDKDGNEYVL 8092 A+ E V+ +I N K G + V+ L++E D+ V +G+ + N YV Sbjct: 833 ANREFNVVANNI-------NNKVGKNDIVNSLNLSNEGLDINVNRIGI--KGGNANRYVQ 883 Query: 8091 LVDK--EKGVLMQRNVK 8047 + + E G ++QR K Sbjct: 884 VQNDFIELGGIVQRTWK 900 >ref|NP_803398.1|structural protein Length = 1225 Score = 36.2 bits (82), Expect = 0.090 Identities = 32/129 (24%), Positives = 67/129 (51%), Gaps = 9/129 (6%) Frame = -3 Query: 8955 LVEKYQKVSKGQQLVEFDIEDMET--------ELEKLKINKKVQELSQNSPTVDAEIKRA 8800 +VE+ + ++ +I+D T E +K + ++ +LS N+P + A I++A Sbjct: 580 IVERLDTAEAERTTLKGEIKDKVTLNEYRNGLEEQKQYTDDQLSDLS-NNPEIKASIEQA 638 Query: 8799 ESAVKSAEQALSDAEKKYEDSKKLFEAQAISKSELDMAE-NAVRDARTALENATVAYNAA 8623 + A ++ DA +D+ K E+QA + ++ E A++DA+ LE A NA Sbjct: 639 NQEAQEALKSYIDA----QDNLKEKESQAYADGKISEEEQRAIQDAQAKLEEA--KQNAE 692 Query: 8622 VESKDVDQK 8596 +++++ ++K Sbjct: 693 LKARNAEKK 701 >ref|NP_058458.1|orf 20 Length = 759 Score = 36.2 bits (82), Expect = 0.090 Identities = 32/129 (24%), Positives = 67/129 (51%), Gaps = 9/129 (6%) Frame = -3 Query: 8955 LVEKYQKVSKGQQLVEFDIEDMET--------ELEKLKINKKVQELSQNSPTVDAEIKRA 8800 +VE+ + ++ +I+D T E +K + ++ +LS N+P + A I++A Sbjct: 552 IVERLDTAEAERTTLKGEIKDKVTLNEYRNGLEEQKQYTDDQLSDLS-NNPEIKASIEQA 610 Query: 8799 ESAVKSAEQALSDAEKKYEDSKKLFEAQAISKSELDMAE-NAVRDARTALENATVAYNAA 8623 + A ++ DA +D+ K E+QA + ++ E A++DA+ LE A NA Sbjct: 611 NQEAQEALKSYIDA----QDNLKEKESQAYADGKISEEEQRAIQDAQAKLEEA--KQNAE 664 Query: 8622 VESKDVDQK 8596 +++++ ++K Sbjct: 665 LKARNAEKK 673 >ref|NP_852592.1|prohead protease Length = 434 Score = 36.2 bits (82), Expect = 0.090 Identities = 30/111 (27%), Positives = 48/111 (43%) Frame = -3 Query: 11013 GTKSERYNNDIKKEVSPLEAEANLEYAKRVKEKNIDDLKLDVYKAALDKLLVEKELDTEK 10834 G K+ER NN++ E ++E+ E + + D KLL L E+ Sbjct: 198 GHKNERTNNEMP--------ETDIEF----DEIELSPTEFDALATVTKKLLARTGLPIEQ 245 Query: 10833 AKLDILSEKYSMAEARYKEGKITENDLNDAKYALDAKKIDVQRVEKSLKTA 10681 +D L + Y E +Y N++ND AL K ++ + EK+L A Sbjct: 246 IVMDELKKAYVRKETQYMVNGDEANNINDG--ALAKKAVEFKTDEKNLYDA 294 >ref|NP_690647.1|morphogenesis protein Length = 365 Score = 36.2 bits (82), Expect = 0.090 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = +3 Query: 2301 HCQTLLVKEGQTVKKGDKIATVGSTGRSTGPHLHFEV 2411 H + LL G+ +KKG+ + G GR+TG HLH V Sbjct: 247 HDENLLYNVGKKLKKGELMGHSGKGGRATGDHLHLNV 283 >ref|NP_958617.1|77ORF002 Length = 1261 Score = 35.8 bits (81), Expect = 0.12 Identities = 32/129 (24%), Positives = 66/129 (51%), Gaps = 9/129 (6%) Frame = -3 Query: 8955 LVEKYQKVSKGQQLVEFDIEDMET--------ELEKLKINKKVQELSQNSPTVDAEIKRA 8800 +VE+ + ++ +I+D T E +K + ++ +LS N+P + A I++A Sbjct: 616 IVERLDTAEAERTTLKGEIKDKVTLNEYRNGLEEQKQYTDDQLSDLS-NNPEIKASIEQA 674 Query: 8799 ESAVKSAEQALSDAEKKYEDSKKLFEAQAISKSELDMAE-NAVRDARTALENATVAYNAA 8623 + A ++ DA +D K E+QA + ++ E A++DA+ LE A NA Sbjct: 675 NQEAQEALKSYIDA----QDDLKEKESQAYADGKISEEEQRAIQDAQAKLEEA--KQNAE 728 Query: 8622 VESKDVDQK 8596 +++++ ++K Sbjct: 729 LKARNAEKK 737 >ref|NP_758934.1|ORF43 Length = 1023 Score = 35.0 bits (79), Expect = 0.20 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 23/162 (14%) Frame = -3 Query: 8931 SKGQ-QLVEFDIEDMETELEKLKIN-----KKVQELSQNSPTV----DAEIKRAESAVKS 8782 +KG+ Q + I+D E ++LK+ ++V EL+Q D R + A K Sbjct: 73 AKGEVQRLAIQIKDSEGPTKRLKVELAAAERQVAELAQEMKAAEQPNDLLTYRFKQAQKE 132 Query: 8781 AEQALSDAEKKYEDSKKLFEAQAISKSELDMAENAVRDARTALENATVAYN-AAVESKDV 8605 A + + K D+K L + +KS+++ E A L+ A N A V +KD+ Sbjct: 133 ANKLGQEFRKVERDNKSLNKEFERAKSQVNQLEQAHLQETQKLQEMRQALNRAGVSTKDL 192 Query: 8604 ---DQKVKKE--NLN-------ALILSISDLEKKIQKTKESM 8515 K K+E LN + I+++E ++ K+KE + Sbjct: 193 AGAQSKAKQEASQLNQEFDRQAKKLERIAEIEARVAKSKERL 234 >ref|NP_049948.1|Hypothetical protein Length = 229 Score = 35.0 bits (79), Expect = 0.20 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%) Frame = +3 Query: 2568 EGNIETEGTVRIDG--KIKGNVKVKGDVYIGKDANINGNISA---NNVYMSGRVDGNIEA 2732 EGN+ G + G ++ GN +V GD ++ +A + G+ VY + V GN E Sbjct: 44 EGNLSHYGNAWVYGNARVYGNARVCGDAWVCDNARVYGDAEVCGDARVYGNAWVYGNAEV 103 Query: 2733 KGVLRILSTAQLYG 2774 R+ A++YG Sbjct: 104 CDNARVYGNARVYG 117 >ref|YP_003919.1|putative tail fiber Length = 728 Score = 34.3 bits (77), Expect = 0.34 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 47/223 (21%) Frame = -3 Query: 8916 LVEFDIEDMETELEKLKINKKVQELSQNSPTV---DAEIKRAES-AVKSAEQALSDA--- 8758 + + D++++ ++++K NK E +QN + A R ES ++K+ Q +SD+ Sbjct: 111 IADLDMDNLNNIVQEIKSNKSAAEAAQNQAELARDSANSARDESISIKNQTQQISDSAIG 170 Query: 8757 --------------EKK-----YEDSKKLFEAQAISKSELDMAENAVRDARTALENATVA 8635 +K+ + +S++ QAI+ ++ D++ V DA+TA + AT A Sbjct: 171 SINAAKDKAITNVQQKENSAVTHINSEEAAAIQAINDAKGDLS-GYVNDAQTAAQTATSA 229 Query: 8634 YN-------AAV-----------ESKDVDQKVKKENLNALILSISDLEKKIQKTKESMFC 8509 N AAV E++D V +NL ++S L K Q K Sbjct: 230 KNDAQAARDAAVSAKDAAAVSAQEAQDAANSVNADNLLTKDGNLSGLADKEQSKKNLAVN 289 Query: 8508 PFD---GIVTEINIQEGAYTSNMQPAFRIVNLDKLKVKAMVNE 8389 + G +TEI Y+++ + F+++ D AM ++ Sbjct: 290 RLNQPRGDLTEI------YSNDDRTGFKLIVKDSGDWGAMTHD 326 >ref|NP_944863.1|unknown Length = 164 Score = 34.3 bits (77), Expect = 0.34 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 11/51 (21%) Frame = -1 Query: 122 CNHEISKGAKFCPE-CGEK----------QEVVCNNCGAKLSPGTKFCSEC 3 C +E KG KFC C K QE C++CG K+C EC Sbjct: 11 CGNEAVKGGKFCSRSCSAKVNNKKHPKRSQEGSCHSCGKVTPKARKYCDEC 61 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,386,452 Number of Sequences: 14420 Number of extensions: 1360783 Number of successful extensions: 4283 Number of sequences better than 0.5: 29 Number of HSP's better than 0.5 without gapping: 3209 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4268 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 6377094199 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig171 (5426 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061653.1|transposase 65 6e-11 ref|NP_040341.1|putative transposase 40 0.003 ref|YP_195203.1|putative S-layer protein 34 0.19 >ref|NP_061653.1|transposase Length = 328 Score = 65.5 bits (158), Expect = 6e-11 Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 1/135 (0%) Frame = -3 Query: 405 FKHLSVYERGQIAALLKEGKSQRYIANKLGRSPSTISREIKRGTTMQMRTDLSTYKVYFP 226 + HL++ ER +I L +E S R IA KL RS STISREI R Q Y Sbjct: 16 YNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISRNNLNQS---------YQA 66 Query: 225 ETGQAVYEKNRMNCGAKRKLA-QVEDFLKFAEDKILREKWSPDAVVGLCRRDPKWQNSTI 49 ET Q YE R CG + ++ + +K+ L+ WSP+ +VG ++ Sbjct: 67 ETAQKNYETKRKLCGRPTRFTPELGNIIKY----YLKCHWSPEQIVGRLLQNQ------- 115 Query: 48 VCTKTLYNYIDLGLI 4 +C KT+Y +I+ +I Sbjct: 116 ICFKTIYRWINSNMI 130 >ref|NP_040341.1|putative transposase Length = 322 Score = 40.0 bits (92), Expect = 0.003 Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 8/140 (5%) Frame = -3 Query: 405 FKHLSVYERGQIAALL-------KEGKSQ-RYIANKLGRSPSTISREIKRGTTMQMRTDL 250 + HLS ++ ++ LL K G+ IA L R STI REIKR T+ + Sbjct: 2 YSHLSFMDKVKLEQLLLSKIFLKKNGEQNISAIAKYLNRHRSTILREIKRFKTID---EY 58 Query: 249 STYKVYFPETGQAVYEKNRMNCGAKRKLAQVEDFLKFAEDKILREKWSPDAVVGLCRRDP 70 S YK + + YEK + N ++ E+ L F + SP ++ R Sbjct: 59 SAYK-----SDKMYYEKRKKN---NKRFKFTEEQLNFIHLRFNVYHDSPSELI--YRYFL 108 Query: 69 KWQNSTIVCTKTLYNYIDLG 10 K++ VC KTLY +I LG Sbjct: 109 KFKVKFPVCVKTLYKWIRLG 128 >ref|YP_195203.1|putative S-layer protein Length = 279 Score = 33.9 bits (76), Expect = 0.19 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 2311 DVDKNHWAARYIKAV-TDAGIFKGYEDSTFRPNETISRAELATVIFKCLD 2165 DV WA + I + T G G+ D TFR E +R ++A ++ CLD Sbjct: 26 DVQPTDWAYQAIVNLNTKYGCLVGFPDGTFRGGEPATRNQMAALVNHCLD 75 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,129,215 Number of Sequences: 14420 Number of extensions: 559359 Number of successful extensions: 1432 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 1280 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1430 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2668110987 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig172 (5996 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061653.1|transposase 70 2e-12 ref|NP_040341.1|putative transposase 41 0.001 ref|YP_003764.1|hypothetical protein 35 0.12 >ref|NP_061653.1|transposase Length = 328 Score = 70.5 bits (171), Expect = 2e-12 Identities = 58/172 (33%), Positives = 83/172 (48%), Gaps = 1/172 (0%) Frame = -3 Query: 717 FKHLSVYERGQIAALLKEGKSQRYIANKLGRSPSTISREIKRGTTMQMRTDLSTYKVYFP 538 + HL++ ER +I L +E S R IA KL RS STISREI R Q Y Sbjct: 16 YNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISRNNLNQS---------YQA 66 Query: 537 ETGQAVYEKNRMNCGAKRKLA-QVEDFLKFAEDKILREKWSPDAVVGLCRRDPKWQNSTI 361 ET Q YE R CG + ++ + +K+ L+ WSP+ +VG ++ Sbjct: 67 ETAQKNYETKRKLCGRPTRFTPELGNIIKY----YLKCHWSPEQIVGRLLQNQ------- 115 Query: 360 VCTKTLYNYIDLGLIKVRNIDLNLKLRLKSK*TGYVKQRIVGKLDQGRKVHQ 205 +C KT+Y +I+ +I N +L LR K K + R GK + GR + Q Sbjct: 116 ICFKTIYRWINSNMI---NFELISCLRQKGKRQKPKETR--GKFNIGRPISQ 162 Score = 65.5 bits (158), Expect = 6e-11 Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 1/135 (0%) Frame = +1 Query: 5407 FKHLSVYERGQIAALLKEGKSQRYIANKLGRSPSTISREIKRGTTMQMRTDLSTYKVYFP 5586 + HL++ ER +I L +E S R IA KL RS STISREI R Q Y Sbjct: 16 YNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISRNNLNQS---------YQA 66 Query: 5587 ETGQAVYEKNRMNCGAKRKLA-QVEDFLKFAEDKILREKWSPDAVVGLCRRDPKWQNSTI 5763 ET Q YE R CG + ++ + +K+ L+ WSP+ +VG ++ Sbjct: 67 ETAQKNYETKRKLCGRPTRFTPELGNIIKY----YLKCHWSPEQIVGRLLQNQ------- 115 Query: 5764 VCTKTLYNYIDLGLI 5808 +C KT+Y +I+ +I Sbjct: 116 ICFKTIYRWINSNMI 130 >ref|NP_040341.1|putative transposase Length = 322 Score = 41.2 bits (95), Expect = 0.001 Identities = 53/187 (28%), Positives = 78/187 (41%), Gaps = 8/187 (4%) Frame = -3 Query: 717 FKHLSVYERGQIAALL-------KEGKSQ-RYIANKLGRSPSTISREIKRGTTMQMRTDL 562 + HLS ++ ++ LL K G+ IA L R STI REIKR T+ + Sbjct: 2 YSHLSFMDKVKLEQLLLSKIFLKKNGEQNISAIAKYLNRHRSTILREIKRFKTID---EY 58 Query: 561 STYKVYFPETGQAVYEKNRMNCGAKRKLAQVEDFLKFAEDKILREKWSPDAVVGLCRRDP 382 S YK + + YEK + N ++ E+ L F + SP ++ R Sbjct: 59 SAYK-----SDKMYYEKRKKN---NKRFKFTEEQLNFIHLRFNVYHDSPSELI--YRYFL 108 Query: 381 KWQNSTIVCTKTLYNYIDLGLIKVRNIDLNLKLRLKSK*TGYVKQRIVGKLDQGRKVHQS 202 K++ VC KTLY +I LG L LR K K + GK D K+ Sbjct: 109 KFKVKFPVCVKTLYKWIRLGFYGF----LKQNLRHHGK-----KYKRKGKSDNRGKLTDF 159 Query: 201 TLAWELN 181 W+++ Sbjct: 160 KSIWDID 166 Score = 40.0 bits (92), Expect = 0.003 Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 8/140 (5%) Frame = +1 Query: 5407 FKHLSVYERGQIAALL-------KEGKSQ-RYIANKLGRSPSTISREIKRGTTMQMRTDL 5562 + HLS ++ ++ LL K G+ IA L R STI REIKR T+ + Sbjct: 2 YSHLSFMDKVKLEQLLLSKIFLKKNGEQNISAIAKYLNRHRSTILREIKRFKTID---EY 58 Query: 5563 STYKVYFPETGQAVYEKNRMNCGAKRKLAQVEDFLKFAEDKILREKWSPDAVVGLCRRDP 5742 S YK + + YEK + N ++ E+ L F + SP ++ R Sbjct: 59 SAYK-----SDKMYYEKRKKN---NKRFKFTEEQLNFIHLRFNVYHDSPSELI--YRYFL 108 Query: 5743 KWQNSTIVCTKTLYNYIDLG 5802 K++ VC KTLY +I LG Sbjct: 109 KFKVKFPVCVKTLYKWIRLG 128 >ref|YP_003764.1|hypothetical protein Length = 108 Score = 34.7 bits (78), Expect = 0.12 Identities = 21/70 (30%), Positives = 34/70 (48%) Frame = -2 Query: 1147 ISAIFFSMLIYVIMP*THFSSLFIETLQKIGESF*GSKSFNNLTTLPFTIIHIINFIVKN 968 ++ I F +IY + HF +IET++ I F G L PF II +I ++++ Sbjct: 35 MTVIIFGWIIYETLITVHFCKNYIETVESIMLGFVGFLGVLCLDKFPFGIILLIIYVIEG 94 Query: 967 VKILDKKPTY 938 + I K Y Sbjct: 95 IYINVKTLKY 104 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,690,266 Number of Sequences: 14420 Number of extensions: 645960 Number of successful extensions: 1541 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 1267 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1539 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2936185416 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig173 (11,451 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_006619.1|Gp39 62 1e-09 ref|NP_046685.1|putative DNA polymerase 62 2e-09 ref|NP_818250.1|gp199 55 2e-07 ref|NP_052286.1|hypothetical protein 54 3e-07 ref|NP_818618.1|gp80 53 6e-07 ref|NP_835521.1|probable ATP-dependent helicase 48 3e-05 ref|NP_803310.1|Pol III-like ATP dependent helicase 48 3e-05 ref|NP_958252.1|hypothetical protein 45 2e-04 ref|YP_164280.1|exonuclease 39 0.012 ref|NP_818464.1|gp164 36 0.078 >ref|YP_006619.1|Gp39 Length = 202 Score = 62.0 bits (149), Expect = 1e-09 Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 21/170 (12%) Frame = +1 Query: 6049 EFVVFDIETTGLSADKDKITEIGAVKIKEGKIVDTFSTFVNPEIPIPEFVVKLTGITDDM 6228 + V+ D ETTGL D D+I EI + ++ G+I+ ++ V P PIP K+ IT++M Sbjct: 20 DHVIIDTETTGLM-DFDEIIEITIINMR-GEIL--LNSLVKPSRPIPPEATKINHITNEM 75 Query: 6229 VSDAPTIDKVLPEFLEFVGTSPLVAHNAVFDTGFI--------------RHNARLINRNV 6366 V+DAPT V P L+ + +A N+ FD + H I + Sbjct: 76 VADAPTWSDVFPAVLKIIWKYKWLAWNSSFDARLMVQSCLKTWFFDDLKPHRITSIIMAI 135 Query: 6367 DNPVIDTLELSRQMFPE-------LKKHKLDVVAKHLGVSLENHHRALDD 6495 + ID + Q + E K+ L A GVS HRAL D Sbjct: 136 ETRHIDAKAVYDQWYGEFDEKRKNFKRQSLATAAARHGVSTAGAHRALAD 185 >ref|NP_046685.1|putative DNA polymerase Length = 1305 Score = 61.6 bits (148), Expect = 2e-09 Identities = 175/897 (19%), Positives = 322/897 (35%), Gaps = 121/897 (13%) Frame = +1 Query: 6754 LILGSACEAGEL------YRAILENKDEDEISRI-VKFYDYLE--IQPLGNNRFLVESGK 6906 +I +AC E+ +A E D I + +K ++++ I+ G ++F +E Sbjct: 150 IIATTACLGSEVNIHLLKIKAFEETGDSQSIKQHKLKIHEFITWCIEVFGKDKFFIELQP 209 Query: 6907 VNSEEDLKNINRKIVALGEKYNKPVVATCDVHFMDPQDE-VFRRILMAGQGFSDADN-QA 7080 SEE + N+K++ + Y+ ++ T D H++ P+D + + L A G + D+ Sbjct: 210 ALSEEQIY-CNKKLIDIANGYDLQMIVTTDAHYLRPEDRAIHQAFLNAKDGEREVDSFYE 268 Query: 7081 PLYFRTTDEMLEEFEYLGREKCYEVVVTNTNLIADMCEDILPIPEGTFPPKIEGAEEEIR 7260 + + DE+ E +Y+ +E + + NT LI +M ED I PK+E ++R Sbjct: 269 ACFVQNVDEIHERMDYIDKE-VIDQAIKNTMLIGEMIED-YTIEHEPIIPKMELPNFKLR 326 Query: 7261 MLAENKAREI-YGDPLPEIVEKRMEKELNSIIKNGFSVMYIIAQKLVWKSLS-DGYLXXX 7434 L + + Y + E +++ ++ L +I++GF +KL L+ + + Sbjct: 327 HLFKPAYDQYEYIKKMSESADEQ-DRYLLKLIEDGFE------EKLKTSELTREAFHKIL 379 Query: 7435 XXXXXXXXXAYLIGITEVNSLPPHYICENCKYSEFIEDGSYGCGFDMPEKECPRCGKI-- 7608 + I S+ +YI + I D G + G + Sbjct: 380 NRINVELGELWEISQKLNQSMSSYYITVR-EIINIIWDDECGGDSLVGAARGSAAGYLVN 438 Query: 7609 -------LKKDGYDIPFETFLGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGVGHVYRAG 7767 + YD+P + PDID++ G + K E FG V + Sbjct: 439 YLLDNTQINPMQYDLPHWRHIHKSRPDLPDIDIDTEGSKRQKILKALRERFGDKRVLQIA 498 Query: 7768 TIGTIAEKTAY----------GFVKNYLDERGIVATNAEINRLVKGCTGVKRTTGQHPGG 7917 T GT K+A + YL G++ N +K C + TG+ P Sbjct: 499 TFGTEGSKSALQTACRGLGIDNDISQYLS--GMIPFERGSNWPLKHCFYGDKETGRKPIK 556 Query: 7918 VMIVPQDREIYEFCPIQYPA----------DDPDSGTITTHFDYHSISGRL--------- 8040 I RE+ ++ ++ A +G I + +Y + + Sbjct: 557 EFI----REVEQYPNLKETALKIEGLTNKRSSHAAGVIIFNDEYTKSNAMMKTPKGAYIT 612 Query: 8041 ------------LKLDILGHDDPTVIKMLEDLTGVNARTIPIGEKRTMGIFSSTEPLGIR 8184 +K D+L I+ L+ + + I E G T I Sbjct: 613 QFNMGDSEAMGSVKFDLL------TIEALDKIRVTLDQLIENNEIEWQGSLKETYNKYIH 666 Query: 8185 PEDINCP-------VGTFAIP---EFGTKFVRQMLVDTKPKTFSE------LIRI--SGL 8310 P+ I G I +F T+ Q +V KPK E L+R+ G Sbjct: 667 PDVIEYEDDKLWEMAGNGEIMDLFQFSTEVGHQSVVKVKPKNLLEAAVTNSLMRLMSDGE 726 Query: 8311 SHGTDVWLNNAQDL-------------------VRNNIASLSEVICTRDDIMLNLIHYGL 8433 D ++ +L + ++ + V T++ +M ++ + Sbjct: 727 EQPVDTYVKYKNNLNKWYEEMTRYGLSEKEIRVMERHLKDIYGVADTQEVVMQMVMDKDI 786 Query: 8434 PNKTAFKIMEDVRKGKGLKEEYEQIMRE------KKVPD-----------WYIESCKKIK 8562 N F I E K + ++ E +++E KK + W ++ ++ Sbjct: 787 AN---FDIKESNYLRKSIAKKKEDVLKEVEELFFKKGKEIGTSDNLLNYVWNVQFKRQFG 843 Query: 8563 YMFPKAHAAAYVMMAFRIAWFKVYYPEAFYAT-YFTVRADEFDASMMCHGKEKVKNKIKE 8739 Y F H AY ++A + Y ++ T TV + D Sbjct: 844 YSFSLLHTLAYSIIALQELNLNYRYNPLYWNTACLTVNSGGIDTE--------------- 888 Query: 8740 YELKGNNMTQKEKNTLTILEVANEMYARGIKFLPIDIYKSD-AVKFKIEKDGLRPPLNAL 8916 + K N T N + + RGIK DI K+D + I + + L + Sbjct: 889 -DTKDNKKT-AATNYGKVASAIGNIRQRGIKIDLPDINKADFGFRTDINNNSILFGLKGM 946 Query: 8917 QGLGVSAAHSIAQARNQGEFLSVDDLRIRAKVSK--TVIEILQQNGCLDGLPESNQI 9081 G+G H I R +F + ++ + K VI+++ + GC D +I Sbjct: 947 NGIGDDVIHHIVLNRPYSDFNDFIERMFKSGIIKKGQVIQLI-KGGCFDSFGNRQEI 1002 Score = 47.4 bits (111), Expect = 3e-05 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 11/76 (14%) Frame = +1 Query: 5806 HLHTQMS---AMDGVTSVGELIKRAAQWGHKAIAVTDHGVVQAYPEACEAAKKNK----- 5961 H HT S +D SV EL+K A + +K +A+TDH V+ A+ +A ++ K Sbjct: 5 HCHTDRSNIRLLDSTNSVKELLKTAVKMEYKGLAITDHEVLSAHLDAIRTVREMKKKGDM 64 Query: 5962 ---IKVIYGIEAYLLD 6000 K+I G EAYL+D Sbjct: 65 PEDFKLILGNEAYLVD 80 >ref|NP_818250.1|gp199 Length = 1131 Score = 55.1 bits (131), Expect = 2e-07 Identities = 89/410 (21%), Positives = 153/410 (37%), Gaps = 23/410 (5%) Frame = +1 Query: 6610 ANSYHAIILVKNYVGLRNLYKIVSKTHL-EYFHKRPRLPRKLLMMHREGLILGSACEAGE 6786 ++S H ++L +N GLRNL+ + S + E F+K+P+L LLM +R+GL C Sbjct: 86 SDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQLDPGLLMQYRDGLWASDGCMLTR 145 Query: 6787 LYRAILENKDEDEISR--------IVKFYDYLEIQPLG-NNRFLVESGKVNSEEDLKNIN 6939 ++ D+++++R I + Y E+ N E +N+ + IN Sbjct: 146 FADYVV--NDQEDLARQEWGVLLHIFGDHFYSELHTWQFINPVSPEQQALNAR--MSKIN 201 Query: 6940 RKIVALGEKYNKPVVATCDVHFMDPQDEVFRRILMAGQGFSDADNQAPLYFRTTDEMLEE 7119 V L ++ P+V D H+ + R + S +Q D M+ Sbjct: 202 LAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSWKKDQHEERGHAADWMMNA 261 Query: 7120 FE---YLGRE----KCYEVVVTNTNLIADMCE-----DILPIPEGTFPPKIEGAEEEIRM 7263 E Y+G E + N+ IAD C +L +P E A R Sbjct: 262 DEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLAMPR-LHATDAEDAAAFRRA 320 Query: 7264 LAENKAREIYGDPLPE-IVEKRMEKELNSIIKNGFSVMYIIAQKLVWKSLSDGYLXXXXX 7440 + E R + LPE + +R+E E II + + + V + + Y Sbjct: 321 IEEGFKRFVVDKGLPEDVYRQRLEYEAKLIIDKNMAGYFNVVADYVLAARNGTYHQAITG 380 Query: 7441 XXXXXXXAYLIGITEVNSLPPHYICENCKYSEFIEDGSYGCGFDMPEKECPRCGKILKKD 7620 + P +C + S +Y G + Sbjct: 381 ----------------DPKPKPCLCGPGRGSAGGSLVTYVMGITS-----------IDPI 413 Query: 7621 GYDIPFETFLGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGVGHVYRAGT 7770 YD+ FE F+ + PDID++F + + +Y + +G +V GT Sbjct: 414 KYDLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGT 463 Score = 38.5 bits (88), Expect = 0.016 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Frame = +1 Query: 5794 RVELHLHTQMSAMDGVTSVGELIKRAAQWGHKAIAVTDHGVVQA---YPEACEAAKKNKI 5964 + LH H + S +DG + E+ RA + G +++A+TDH V + +AC+AA + Sbjct: 5 KAALHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAA---GV 61 Query: 5965 KVIYGIE 5985 K + G E Sbjct: 62 KPVLGAE 68 >ref|NP_052286.1|hypothetical protein Length = 194 Score = 54.3 bits (129), Expect = 3e-07 Identities = 54/168 (32%), Positives = 70/168 (41%), Gaps = 14/168 (8%) Frame = +1 Query: 6040 VDGEFVVFDIETTGLSADKDKITEIGAVKIKEGKIVDTFSTFVNPEIPIPEFVVKLTGIT 6219 ++ + + D ETTGL D + I EI + G I+ +T V P PIP + GIT Sbjct: 16 LEDDRIFIDTETTGLGDDAE-IVEICLID-SAGFIM--LNTLVKPTKPIPAEATAIHGIT 71 Query: 6220 DDMVSDAPTIDKVLPEFLEFVGTSPLVAHNAVFDTGFIRHNARLINRNVDNPVIDTLELS 6399 D+MV APT + V +NA +DT I A+L D E S Sbjct: 72 DEMVMYAPTWKDIHGAVASLFFEYGFVIYNADYDTRLIYQTAKLYGLENDGFCYFLNERS 131 Query: 6400 R-------------QMFPELKKHKLDVVAKHLGVSLENH-HRALDDAK 6501 F K HKL A H GVS+E HRAL D + Sbjct: 132 ACAMMLYAEYRGEPGRFKGYKWHKLVDAAAHEGVSVEGKAHRALADCR 179 >ref|NP_818618.1|gp80 Length = 1111 Score = 53.1 bits (126), Expect = 6e-07 Identities = 74/350 (21%), Positives = 142/350 (40%), Gaps = 30/350 (8%) Frame = +1 Query: 6544 EKNVKTIDDIQNVFEGCWNYQKAN-SYHAIILVKNYVGLRNLYKIVSKTHLEYFHKRPRL 6720 E+ +K I + F K H I N +G RNL +I+++++++ + + P + Sbjct: 56 ERGIKPIFGCEIYFSPVGEEDKTRRKTHLTIFAMNEIGYRNLNRIITQSYVDAY-QWPTV 114 Query: 6721 PRKLLMMHREGLILGSACEAGELYRAILENK----------DEDEISRIVKFYDYLEIQP 6870 + L + EG+++ S C L +L K D+D + + YL++ Sbjct: 115 SWENLEANHEGILVLSGCADSLLSCTLLGGKYLGEQRSHVTDDDMDNARRQIQRYLDVF- 173 Query: 6871 LGNNRFLVESGKVNSEEDLKNINRKIVALGEKYNKPVVATCDVHFMDPQDEVFRRILMAG 7050 NRF +E + + + +N I L P+VAT DVH+ P+ + +L A Sbjct: 174 --GNRFALEVQRFPHYDRTRALNPAIAELSRDTGVPLVATADVHYPFPEQNKLQALLHAA 231 Query: 7051 QGFSDAD--------NQAPLYFRTTD-EMLEEFEYLGREKCYE-VVVTNTNLIADMCEDI 7200 + S D + A L + +D E+ ++ G + + T+++A+ C Sbjct: 232 RWKSSPDFAAEASWEHSANLTYPLSDKEIHDDLVATGLDSADAWKAIQYTSILAERCTVE 291 Query: 7201 LPIPEG---TFPPKIEGAEEEIRMLAENKAREIYGDP-----LPEIVEKRMEKELNSIIK 7356 LP + + ++ R +A+ + P E V KR++ E I Sbjct: 292 LPKAKPLRFVCDKGLTAKQQLSREIAKGWKYRVAQRPDMARRKAEYV-KRLQYEFKIITD 350 Query: 7357 NGFSVMYIIAQKLVWKSLSDGY-LXXXXXXXXXXXXAYLIGITEVNSLPP 7503 F +++ LV ++ + +YL+ ITE++ L P Sbjct: 351 KDFGDYFLVISDLVRRAKDKSIDVGPARGSAAASLISYLLRITEIDPLHP 400 >ref|NP_835521.1|probable ATP-dependent helicase Length = 310 Score = 47.8 bits (112), Expect = 3e-05 Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 5/163 (3%) Frame = +1 Query: 6049 EFVVFDIETTGLSADKDKITEIGAVKIKEGKIVDTFSTFVNPEIPIPEFVVK---LTGIT 6219 + V D ET ++ + E+ IK+ IV +S+++NP P + +K + I Sbjct: 5 DIAVLDFET--MNEHMNSPCEVAVSLIKDLSIVKVYSSYINP--PNNRYNLKNAKIHKIP 60 Query: 6220 DDMVSDAPTIDKVLPEFLEFVGTSPLV-AHNAVFDTGFIRHNARLINRNVDN-PVIDTLE 6393 +D++ AP + E L + S L+ AHNA+FD +++ + V N +D++ Sbjct: 61 EDVILKAPKYPDIYQEILYLLKESHLIIAHNALFDISVLKNTNNYYDLPVPNFMYVDSIN 120 Query: 6394 LSRQMFPELKKHKLDVVAKHLGVSLENHHRALDDAKACGEIFI 6522 + R F + KL+ + + E H A D A ++ I Sbjct: 121 IFRS-FHAISSFKLENLCSLYDIDKEKLHSAKFDVLALSKMLI 162 >ref|NP_803310.1|Pol III-like ATP dependent helicase Length = 310 Score = 47.8 bits (112), Expect = 3e-05 Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 5/163 (3%) Frame = +1 Query: 6049 EFVVFDIETTGLSADKDKITEIGAVKIKEGKIVDTFSTFVNPEIPIPEFVVK---LTGIT 6219 + V D ET ++ + E+ IK+ IV +S+++NP P + +K + I Sbjct: 5 DIAVLDFET--MNEHMNSPCEVAVSLIKDLSIVKVYSSYINP--PNNRYNLKNAKIHKIP 60 Query: 6220 DDMVSDAPTIDKVLPEFLEFVGTSPLV-AHNAVFDTGFIRHNARLINRNVDN-PVIDTLE 6393 +D++ AP + E L + S L+ AHNA+FD +++ + V N +D++ Sbjct: 61 EDVILKAPKYPDIYQEILYLLKESHLIIAHNALFDISVLKNTNNYYDLPVPNFMYVDSIN 120 Query: 6394 LSRQMFPELKKHKLDVVAKHLGVSLENHHRALDDAKACGEIFI 6522 + R F + KL+ + + E H A D A ++ I Sbjct: 121 IFRS-FHAISSFKLENLCSLYDIDKEKLHSAKFDVLALSKMLI 162 >ref|NP_958252.1|hypothetical protein Length = 263 Score = 45.1 bits (105), Expect = 2e-04 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 14/138 (10%) Frame = +1 Query: 6055 VVFDIETTGLSADKDKITEIGAVKIKEGKIVDTFSTFVNPEIPIPEFVVKLTGITDDMVS 6234 V FD+ETTG+ ++D+I A+ + K + T +P I IPE + GIT + Sbjct: 8 VAFDLETTGVDVEQDRIVTAAAIDLGAEKPL-TLEWLADPGIEIPEGATAVHGITTEHAR 66 Query: 6235 D-----APTIDKVLPEF-LEFVGTSPLVAHNAVFDTGFI-----RHNARLINRNVDNP-- 6375 + +D+V L P+V HN +D + R+ L+ +D Sbjct: 67 EHGERAHDVVDQVAETLALRVRDGVPVVGHNVPYDLTLLDRECRRYELPLLQDRLDGTPL 126 Query: 6376 -VIDTLELSRQMFPELKK 6426 VIDT L + P K+ Sbjct: 127 HVIDTRVLDQHCLPYRKR 144 >ref|YP_164280.1|exonuclease Length = 201 Score = 38.9 bits (89), Expect = 0.012 Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 25/179 (13%) Frame = +1 Query: 6058 VFDIETTGLSADK--------DKITEIGAVKIKE-GKIVDTFSTFVNPE-IPIPEFVVKL 6207 +FD ETTG+ K I E+ A+ G +D F V P I + + Sbjct: 5 IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEAIVRPNGWEITPEMTAI 64 Query: 6208 TGITDDMVSDAPTID-KVLPEFLEFVGTSPL-VAHNAVFDTGFIRHNARLINRNVDNPVI 6381 GI+ + D + + L FL G + AHN FD R + R D Sbjct: 65 HGISHEQAMDVGISEAEALEGFLAINGRAARRAAHNISFDDRITRI---ALMRYQDEDAA 121 Query: 6382 DTLELSRQMF---------PELKKHKLDVVA---KHL-GVSLENHHRALDDAKACGEIF 6519 + + S + F L ++KL +A KH G L HRA+ DA+AC I+ Sbjct: 122 NAFKESGEKFCTCYRSRAQVALPRNKLPTLAEAYKHFTGEDLVEAHRAMPDAQACARIY 180 >ref|NP_818464.1|gp164 Length = 178 Score = 36.2 bits (82), Expect = 0.078 Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 16/184 (8%) Frame = +1 Query: 6049 EFVVFDIETTGLSADKDKITEIGAVKIKEGK-------IVDTFSTFVNPE-IPIPEFVVK 6204 + +V D ET GL + + EI AV ++ G+ + + PE + I F + Sbjct: 4 QIIVVDTETGGLGPNAP-VLEIAAVNVETGEEFRVVPFVTAAQLSSCEPEALAINRFYER 62 Query: 6205 LTGITDDMVSDAPTIDKVLPEFLEFVGTSPLVAHNAVFDTGFIRHNARLINRN------- 6363 + DM+ DA + + N FD I A+L+N Sbjct: 63 R--VFADMLEDAEGNKNAFDWLRSMLDGNVFAGSNPAFDAPLI---AKLLNGEPWHHRKL 117 Query: 6364 -VDNPVIDTLELSRQMFPELKKHKLDVVAKHLGVSLENHHRALDDAKACGEIFIKCLEIL 6540 +++ L L P L K V + LGV E+ H AL DA+A E F + L + Sbjct: 118 ALESYAAGVLGLPLDELPGLNK-----VCEILGVENEDPHSALGDARATAECF-RILRGM 171 Query: 6541 AEKN 6552 AE+N Sbjct: 172 AEQN 175 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,240,398 Number of Sequences: 14420 Number of extensions: 1233791 Number of successful extensions: 3448 Number of sequences better than 0.5: 10 Number of HSP's better than 0.5 without gapping: 2745 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3443 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 5531391110 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig175 (16,855 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 45 2e-04 ref|YP_077256.1|group I glycosyltransferase 41 0.005 ref|NP_835600.1|putative glycosyltransferases 35 0.33 >ref|NP_046572.1|ABC transporter Length = 705 Score = 45.1 bits (105), Expect = 2e-04 Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Frame = -2 Query: 1632 KRRIGYLPENPPLYTDMTVDEYLNF--VSELKKVEKSKRKQQISDIMEMLKITDVRKRLI 1459 ++RI Y+ ENP L+ T+ E L + + ++E + Q + + L K Sbjct: 556 RKRIVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSE 614 Query: 1458 R--NLSKGYKQRVGFAQALIGNPEVLILDEPTVGLDPNQILEVRNVIKELRKDHTIIFST 1285 NLS G KQR+ A+A++ P+VLILDE +DP+ + + R D II T Sbjct: 615 NGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLH--RMDCLIILIT 672 Query: 1284 H 1282 H Sbjct: 673 H 673 >ref|YP_077256.1|group I glycosyltransferase Length = 329 Score = 40.8 bits (94), Expect = 0.005 Identities = 47/215 (21%), Positives = 97/215 (45%), Gaps = 2/215 (0%) Frame = -1 Query: 16666 GINPKKIKVIFNG--VDVKYWSEPVESTVREEFQIDDDVFVMLCASRFAHDKGHKFLINA 16493 G++ I+VI++G ++V Y E VRE + I + ++L + + K Sbjct: 143 GLDLPPIRVIYHGNYLNVAYTREEAVQKVREMYGIPPNKKIILNVTNYHPRK-------- 194 Query: 16492 LYELKKMTNRKFKCILSNDGPLLEECKKQVEDMGLSDVVIFAGFRKDIKNLIYGCDLYIN 16313 +L ++ R+ + L +D L+ K + D I ++ L G D+Y++ Sbjct: 195 --DLPRL--RRIREKLGDDYYLITVGKGNI----YGDKSIGTISDTELSLLYAGSDVYLS 246 Query: 16312 SSEHEALSFLIIEVLACGVPLIATDMGGNRDIINKETNCGILVQYNDHKGLAEAIIKVME 16133 +S+ E ++E A G+P + TD+ ++++ G ++ + EAI K+ E Sbjct: 247 ASQDEGFELPLVEAAAHGLPAVVTDIPVHKEL-------GKHLKLFFYSSDEEAIEKIKE 299 Query: 16132 DGELRKTLSKNALKTVREKFNLDKVAEETYNLYEE 16028 E+R TL + F +++V +E ++ + Sbjct: 300 AQEIRVTLP--------DYFKVERVIKEHEEVFRK 326 >ref|NP_835600.1|putative glycosyltransferases Length = 484 Score = 34.7 bits (78), Expect = 0.33 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 1/95 (1%) Frame = -1 Query: 16501 INALYELKKMTNRKFKCILSNDGPLLEECKKQVEDMGLSDVVIFAGF-RKDIKNLIYGCD 16325 IN+ + + + R+ +SND +V GF R++I L G D Sbjct: 262 INSFFHYRDIDLREHIVFISND-----------------EVFHNGGFSREEIALLYNGAD 304 Query: 16324 LYINSSEHEALSFLIIEVLACGVPLIATDMGGNRD 16220 + + S +E +E CG P++AT GG D Sbjct: 305 VVLQLSSNEGFGIASLEASLCGAPVVATMTGGIAD 339 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,244,271 Number of Sequences: 14420 Number of extensions: 1839373 Number of successful extensions: 5115 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 3695 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5111 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 7973826948 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig176 (14,231 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164437.1|lysin 98 2e-20 ref|NP_690702.1|amidase 98 3e-20 ref|NP_073698.1|peptidoglycan hydrolase 92 1e-18 ref|NP_511002.1|Ply protein 43 8e-04 ref|NP_612849.1|endolysin 43 0.001 ref|NP_958622.1|77ORF005 39 0.011 ref|NP_612861.1|putative sigma factor 39 0.015 ref|NP_075522.1|amidase 39 0.019 ref|NP_058463.1|amidase (peptidoglycan hydrolase) 37 0.056 ref|NP_861740.1|RB69ORF050c hypothetical protein 36 0.096 ref|NP_803355.1|peptidoglycan hydrolase 36 0.13 ref|NP_932589.1|hypothetical protein 35 0.21 ref|NP_945242.1|hypothetical protein 34 0.48 >ref|YP_164437.1|lysin Length = 355 Score = 98.2 bits (243), Expect = 2e-20 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 6/180 (3%) Frame = -3 Query: 12210 NRTYKVVIDAGHGGSQSGAVYGGVKEKDLNLDIAKRLNTLL--KAEGIKTYMTREKDITV 12037 NR KV IDAGHGGS GAV G++EKDL L +A + T+L + E ++ ++RE D+ + Sbjct: 9 NRPVKVFIDAGHGGSDPGAVANGLREKDLCLQVALAVKTILENEYENVEVRLSRETDVFL 68 Query: 12036 GLYTRSDLANKEKADLFVSIHNNAGNSKTSGSMTLYHPDSGKKKGN----LTAYEFAQIV 11869 L R LAN AD+F+SIH NA +G T + ++ + + + FAQ Sbjct: 69 TLGERCRLANNWGADIFISIHFNAFTPAATGFETFRYRNAPNRTRDAHVEIHRVMFAQAF 128 Query: 11868 QKNLNKTLGSKNMGVIQRPNLAVLRTTNMPAVIAEIGYMSNSAELAKLKTDSYRQKAAEA 11689 + + GSK G V++ TNM AV+ E G+++NS + LK+ ++ ++ AEA Sbjct: 129 RGKM-PDRGSKTAG------FYVVKNTNMTAVLTEGGFLTNSNDARHLKSGAFLREVAEA 181 >ref|NP_690702.1|amidase Length = 271 Score = 97.8 bits (242), Expect = 3e-20 Identities = 70/198 (35%), Positives = 99/198 (50%), Gaps = 1/198 (0%) Frame = -3 Query: 12195 VVIDAGHGGSQSGAVYGGVKEKDLNLDIAKRLNTLLKAE-GIKTYMTREKDITVGLYTRS 12019 V +DAGHGG SGA G+KEKD+ L I K++ ++L + + +TR+ D+ L R+ Sbjct: 5 VWLDAGHGGKDSGAAANGIKEKDIVLKIVKKVKSILTSRYEVAVKLTRDSDVFYELIDRA 64 Query: 12018 DLANKEKADLFVSIHNNAGNSKTSGSMTLYHPDSGKKKGNLTAYEFAQIVQKNLNKTLGS 11839 AN KADLFVS+H NA Y S + K + K G Sbjct: 65 RKANAAKADLFVSVHINATPGGKGFETYRYVKTSASSSTGQQQKVLHDAIYKRIKK-YGI 123 Query: 11838 KNMGVIQRPNLAVLRTTNMPAVIAEIGYMSNSAELAKLKTDSYRQKAAEALRDAVIESLE 11659 K+ G + +L+VLR T+MPAV+ E ++ N E A LK DS+ AE + + E L Sbjct: 124 KDRGE-KAADLSVLRNTSMPAVLTENLFIDNKDEAALLKKDSFLNDVAEGHAEGIAEIL- 181 Query: 11658 KMYK*KSFYAVKFKDKIS 11605 + K A K +DK S Sbjct: 182 NLKKKSGGSAPKKEDKPS 199 >ref|NP_073698.1|peptidoglycan hydrolase Length = 239 Score = 92.0 bits (227), Expect = 1e-18 Identities = 68/202 (33%), Positives = 102/202 (50%), Gaps = 4/202 (1%) Frame = -3 Query: 12195 VVIDAGHGGSQSGAVYGGVKEKDLNLDIAKRLNTLLKAE--GIKTYMTREKDITVGLYTR 12022 +V+D GHGG +GAV G V EK+L + + + L++ G K +TR D V L R Sbjct: 5 IVLDGGHGGKDAGAVNGKVYEKNLVMKLVNKTKHYLESAYVGHKVLLTRSDDTFVSLSDR 64 Query: 12021 SDLANKEKADLFVSIHNNAGNSKTSGSMTLYHPDSGKKKGNLTAYEFAQIVQKNLNKTLG 11842 + ANK+KA+ FVS H NAG +G T +P + + E Q+++K K G Sbjct: 65 ASYANKQKANAFVSFHINAGGG--TGFETFKYPSAEGRLQKYVHDEIKQVLKKYNVKDRG 122 Query: 11841 SKNMGVIQRPNLAVLRTTNMPAVIAEIGYMSNSAELAKLKTDSYRQK--AAEALRDAVIE 11668 K+ NLAV+R T M AV+ E ++ + +L LK D + + A A+ A Sbjct: 123 RKS------ANLAVVRETKMEAVLTETLFIDKATDLELLKNDKFMDEIAIAHAVGVAKFL 176 Query: 11667 SLEKMYK*KSFYAVKFKDKISD 11602 L+K K K+ + +K K D Sbjct: 177 GLKKKAKPKT-KTINYKIKKGD 197 >ref|NP_511002.1|Ply protein Length = 314 Score = 43.1 bits (100), Expect = 8e-04 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 5/174 (2%) Frame = -3 Query: 12180 GHGGSQSGA--VYGGVKEKDLNLDIAKRLNTLLKAEG--IKTYMTREKDI-TVGLYTRSD 12016 GH GA + +KE + L+ A + LK EG +KT++ R + L + Sbjct: 9 GHSDKCVGAEDILSEIKEAEKVLNAA---SDELKREGHNVKTFIDRTSTTQSANLNKIVN 65 Query: 12015 LANKEKADLFVSIHNNAGNSKTSGSMTLYHPDSGKKKGNLTAYEFAQIVQKNLNKTLGSK 11836 N AD+ +S+H NAG K +G Y+ +G +KG A E + + K LG Sbjct: 66 WHNANPADVHISVHLNAG--KGTGVEVWYY--AGDEKGRKLAVE----ISAKMAKALGLP 117 Query: 11835 NMGVIQRPNLAVLRTTNMPAVIAEIGYMSNSAELAKLKTDSYRQKAAEALRDAV 11674 N G +L L +T AV+ E+ ++ + + K A+ + + Sbjct: 118 NRGAKATKDLRFLNSTKGTAVLLEVCFVDRKEDANAIHKSGMYDKLGIAIAEGL 171 >ref|NP_612849.1|endolysin Length = 347 Score = 42.7 bits (99), Expect = 0.001 Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 4/186 (2%) Frame = -3 Query: 12198 KVVIDAGHGGSQSGAVYGGVKEKDLNLDIAKRLNTLLKAEG--IKTYMTREKDITVGLYT 12025 K+ GH +GAV G + E + + KA G + D L Sbjct: 2 KIAERGGHNFQATGAV-GLINETVEDRKVLAAAYKYTKAAGYDVLDVTPGNCDSNTDLIL 60 Query: 12024 RSDLANKEKADLFVSIHNNAGNSKTSGSMTL--YHPDSGKKKGNLTAYEFAQIVQKNLNK 11851 + A + A+LF+S H + + +G++ + + +G K A E+A+ + + Sbjct: 61 GVNKAERFGAELFLSYHFDKCYDEYNGALGVACWICATGGK-----AEEYAKSIVDTIAA 115 Query: 11850 TLGSKNMGVIQRPNLAVLRTTNMPAVIAEIGYMSNSAELAKLKTDSYRQKAAEALRDAVI 11671 G KN GV P L LR T+MPAVI E+ + + ++ Y++K A+ + + Sbjct: 116 GTGLKNRGVKVNPKLYELRKTSMPAVIVEVCFCEATEDVR-----IYKEKGADLIGKLIA 170 Query: 11670 ESLEKM 11653 E + K+ Sbjct: 171 EGVCKV 176 >ref|NP_958622.1|77ORF005 Length = 484 Score = 39.3 bits (90), Expect = 0.011 Identities = 52/242 (21%), Positives = 94/242 (38%), Gaps = 20/242 (8%) Frame = -3 Query: 12327 PMRFVAETFGENVGWDAKNEMAYIGNKPAEIPSRSGLKSN---RTYKVVIDAGHGGSQSG 12157 PM F+ F N+ +GNK I ++ K + K+++ AGHG + G Sbjct: 143 PMYFIRLNFPNNLS---------VGNKAKGIIKQATTKKEAVIKPKKIMLVAGHGYNDPG 193 Query: 12156 AVYGGVKEKD-----LNLDIAKRLN------TLLKAEGIKTYMTREKDITVGLYTRSDL- 12013 AV G E+D + +IAK L L M ++ V + + D Sbjct: 194 AVGNGTNERDFIRKYITPNIAKYLRHAGHEVALYGGSSQSQDMYQDTAYGVNVGNKKDYG 253 Query: 12012 ---ANKEKADLFVSIHNNAGNSKTSGSMTLYHPDSGKKKGNLTAYEFAQIVQKNLNKTLG 11842 + D+ + IH +A SG + S + + +++ NL + G Sbjct: 254 LYWVKSQGYDIVLEIHLDAAGESASGGHVII---SSQFNADTIDKSIQDVIKNNLGQIRG 310 Query: 11841 SKNMGVIQRPNLAVLRTTNMPAVIAEIGYMSNSAELAKLKT--DSYRQKAAEALRDAVIE 11668 + N+ V N+ ++E+G+++N ++ +K D Y + A A+ I Sbjct: 311 VTPRNDLL--NVNVSAEININYRLSELGFITNKNDMDWIKKNYDLYSKLIAGAIHGKPIG 368 Query: 11667 SL 11662 L Sbjct: 369 GL 370 >ref|NP_612861.1|putative sigma factor Length = 181 Score = 38.9 bits (89), Expect = 0.015 Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 13/152 (8%) Frame = +2 Query: 6017 DDLISIGTIGLIKAISTFNHEKGTRLATYAARCIENEI---LMHIRSN--KKTQSEVSLQ 6181 D++ SI +GL+KA F + KG TYA + IE EI L RS +K + + Sbjct: 28 DEINSIAFLGLLKAKKRFEY-KGVEFVTYAMKTIEYEIKNSLYRDRSKFRRKNIAGKDVY 86 Query: 6182 DPIGVDRDGNEI------ALIDVI--GNXXXXXXXXXXLKMQVKRLYNKMKDVLKAREKM 6337 + I D EI LID + + LK+ + +L + +LK Sbjct: 87 ERIYTDSLDKEINSAEGVKLIDCLVEESNTDEYVENIDLKIAINKLNTYQRKILK----- 141 Query: 6338 VLELRYGLLNGTGKTQREIAKMLGISRSYVSR 6433 +L KTQRE AK+L + +SR Sbjct: 142 -------MLYFDEKTQRETAKILSVHEKTISR 166 >ref|NP_075522.1|amidase Length = 484 Score = 38.5 bits (88), Expect = 0.019 Identities = 50/234 (21%), Positives = 92/234 (39%), Gaps = 20/234 (8%) Frame = -3 Query: 12327 PMRFVAETFGENVGWDAKNEMAYIGNKPAEIPSRSGLKSN---RTYKVVIDAGHGGSQSG 12157 PM F+ F N+ +GNK I ++ K + K+++ AGHG + G Sbjct: 143 PMYFIRLNFPNNLS---------VGNKAKGIIKQATTKKEAVIKPKKIMLVAGHGYNDPG 193 Query: 12156 AVYGGVKEKD-----LNLDIAKRLN------TLLKAEGIKTYMTREKDITVGLYTRSDL- 12013 AV G E+D + +IAK L L M ++ V + + D Sbjct: 194 AVGNGTNERDFIRKYITPNIAKYLRHAGHEVALYGGSSQSQDMYQDTAYGVNVGNKKDYG 253 Query: 12012 ---ANKEKADLFVSIHNNAGNSKTSGSMTLYHPDSGKKKGNLTAYEFAQIVQKNLNKTLG 11842 + D+ + IH +A SG + S + + +++ NL + G Sbjct: 254 LYWVKSQGYDIVLEIHLDAAGESASGGHVII---SSQFNADTIDKSIQDVIKNNLGQIRG 310 Query: 11841 SKNMGVIQRPNLAVLRTTNMPAVIAEIGYMSNSAELAKLKT--DSYRQKAAEAL 11686 + N+ V N+ ++E+G+++N ++ +K D Y + A A+ Sbjct: 311 VTPRNDLL--NVNVSAEININYRLSELGFITNKNDMDWIKKNYDLYSKLIAGAI 362 >ref|NP_058463.1|amidase (peptidoglycan hydrolase) Length = 484 Score = 37.0 bits (84), Expect = 0.056 Identities = 50/242 (20%), Positives = 93/242 (38%), Gaps = 20/242 (8%) Frame = -3 Query: 12327 PMRFVAETFGENVGWDAKNEMAYIGNKPAEIPSRSGLKSN---RTYKVVIDAGHGGSQSG 12157 PM F+ F + V +G+K + ++ K + K+++ AGHG + G Sbjct: 143 PMYFIRLNFPDKVS---------VGDKAKSVIKQATAKKQAVIKPKKIMLVAGHGYNDPG 193 Query: 12156 AVYGGVKEKD-----LNLDIAKRLN------TLLKAEGIKTYMTREKDITVGLYTRSDL- 12013 AV G E+D + +IAK L L M ++ V + D Sbjct: 194 AVGNGTNERDFIRKYITPNIAKYLRHAGHEVALYGGSSQSQDMYQDTAYGVNVGNNKDYG 253 Query: 12012 ---ANKEKADLFVSIHNNAGNSKTSGSMTLYHPDSGKKKGNLTAYEFAQIVQKNLNKTLG 11842 + D+ + IH +A SG + S + + +++ NL + G Sbjct: 254 LYWVKSQGYDIVLEIHLDAAGESASGGHVII---SSQFNADTIDKSIQDVIKNNLGQIRG 310 Query: 11841 SKNMGVIQRPNLAVLRTTNMPAVIAEIGYMSNSAELAKLKT--DSYRQKAAEALRDAVIE 11668 + N+ V N+ ++E+G+++N ++ +K D Y + A A+ I Sbjct: 311 VTPRNDLL--NVNVSAEININYRLSELGFITNKKDMDWIKKNYDLYSKLIAGAIHGKPIG 368 Query: 11667 SL 11662 L Sbjct: 369 GL 370 >ref|NP_861740.1|RB69ORF050c hypothetical protein Length = 389 Score = 36.2 bits (82), Expect = 0.096 Identities = 16/42 (38%), Positives = 29/42 (69%) Frame = +2 Query: 2741 KKIPEYIKEVAGIGVDAIILSDPGILSIVKEIAPDMEIHLST 2866 K I +Y++ + IGV I +++P ++ IV+E+ D+EI +ST Sbjct: 97 KAIQDYVQYLWSIGVWRITIANPVVMEIVREVNKDIEIEVST 138 >ref|NP_803355.1|peptidoglycan hydrolase Length = 484 Score = 35.8 bits (81), Expect = 0.13 Identities = 50/242 (20%), Positives = 92/242 (38%), Gaps = 20/242 (8%) Frame = -3 Query: 12327 PMRFVAETFGENVGWDAKNEMAYIGNKPAEIPSRSGLKSN---RTYKVVIDAGHGGSQSG 12157 PM F+ F + V +G+K + ++ K + K+++ AGHG + G Sbjct: 143 PMYFIRLNFPDKVS---------VGDKAKSVIKQATAKKQAVIKPKKIMLVAGHGYNDPG 193 Query: 12156 AVYGGVKEKD-----LNLDIAKRLN------TLLKAEGIKTYMTREKDITVGLYTRSDL- 12013 AV G E+D + +IAK L L M ++ V + D Sbjct: 194 AVGNGTNERDFIRKYITPNIAKYLRHAGHEVALYGGSSQSQDMYQDTAYGVNVGNNKDYG 253 Query: 12012 ---ANKEKADLFVSIHNNAGNSKTSGSMTLYHPDSGKKKGNLTAYEFAQIVQKNLNKTLG 11842 D+ + IH +A SG + S + + +++ NL + G Sbjct: 254 LYWVKSHGYDIVLEIHLDAAGESASGGHVII---SSQFNADTIDKSIQDVIKNNLGQIRG 310 Query: 11841 SKNMGVIQRPNLAVLRTTNMPAVIAEIGYMSNSAELAKLKT--DSYRQKAAEALRDAVIE 11668 + N+ V N+ ++E+G+++N ++ +K D Y + A A+ I Sbjct: 311 VTPRNDLL--NVNVSAEININYRLSELGFITNKNDMDWIKKNYDLYSKLIAGAIHGKPIG 368 Query: 11667 SL 11662 L Sbjct: 369 GL 370 >ref|NP_932589.1|hypothetical protein Length = 507 Score = 35.0 bits (79), Expect = 0.21 Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 13/207 (6%) Frame = -1 Query: 14081 FISETVLLYVQLLCFWRSLLQRLQVTLLAKYKFPGSGFFGILILATQLLPGMMFLLPLYL 13902 FI +LL + C W +L +G+ + +T + M+ L Sbjct: 179 FIQVGILLTAGIACTWFTL-----------------DAYGVHVGSTSIAGSMVSLYKELP 221 Query: 13901 DFVKIKQATGIQLINSIPGLVIVYSAF-----FVPFSIWIIRGFFASIPGELEEAARIDG 13737 + ++ G +IPG++ V F + F+ +I++G A+ + + + Sbjct: 222 NHFQLVLEPGHPAYENIPGILGVVGVFLGSLSYFAFNQFIVQGALAAKSVKEAQKGMV-- 279 Query: 13736 CNKFTAFLRVMLPLAV--PGIVATAIYIFLTAWDELIFAWVLLKDTKVTTIPAGIRG--- 13572 F AFL++++PL V PGI+A ++ + + W++ +PAG G Sbjct: 280 ---FAAFLKLLMPLVVIIPGIMAYSMTNGSLTPSDKAYPWLI-----DNFMPAGFHGLVM 331 Query: 13571 ---FIAYTTARYDLLMAAGTIVTIPVL 13500 F A + +L + T+ T+ ++ Sbjct: 332 AALFAAIISTLAAILNSISTMFTLDIV 358 >ref|NP_945242.1|hypothetical protein Length = 513 Score = 33.9 bits (76), Expect = 0.48 Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 2/65 (3%) Frame = -2 Query: 8662 NRERLIQEARAEARKILLEARKEAEEIISKMRRLEQEV-HNAQRQKEAEELRLK-LKRKV 8489 N+E + E +A IL+EA+ +AEEI+ ++ +E+ NA ++K + + LK L RKV Sbjct: 97 NKEIDLFENIDKADDILIEAQNQAEEILENAKQEAEEIKENALQEKYSLKASLKELSRKV 156 Query: 8488 DSIEE 8474 + +++ Sbjct: 157 EKLKQ 161 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,945,858 Number of Sequences: 14420 Number of extensions: 1480966 Number of successful extensions: 4182 Number of sequences better than 0.5: 13 Number of HSP's better than 0.5 without gapping: 3218 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4176 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 6776838135 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig177 (13,636 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 82 1e-15 ref|NP_536395.1|ISBt3 transposase subunit protein 38 0.024 ref|YP_025041.1|putative transposase B 37 0.070 ref|NP_620626.1|putative transposase 36 0.12 ref|NP_859396.1|hypothetical protein 34 0.35 ref|NP_958229.1|gene 55 protein 34 0.35 >ref|NP_046572.1|ABC transporter Length = 705 Score = 82.0 bits (201), Expect = 1e-15 Identities = 85/368 (23%), Positives = 161/368 (43%), Gaps = 19/368 (5%) Frame = -3 Query: 2138 TNAAFTFVVAIPALFIVVFAIMLLSIPLYRKVQQRLDRVLKSTR------ENLTGVRVIR 1977 TN + +P L + AI+ L +K Q+ ++ KST +N+T V + Sbjct: 303 TNNILFLTIILPILLLSCLAILFFD-HLKKKNQKLMEDKAKSTSLLINFLKNMTTVYSLN 361 Query: 1976 --AFRLEEKEIAEFDKR-------NEELTSTQIFVGRISALMNPLTYVXXXXXXXXXXXI 1824 +F LE+ + +DK+ + + S +I G I N T + Sbjct: 362 KTSFFLEKFHLT-YDKQLNSTFSVAKAVISNEILKGLIQ---NSFTIIILWV-------- 409 Query: 1823 GAIRVSKGLLTQGAVLALYNYMSQILTELIKFANLIISITKAVASANRISAVLDVESSLV 1644 G +V ++ G +L + + +L+ L + ++ + +A ++ R DV + V Sbjct: 410 GTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHVASIRF---FDVVNYPV 466 Query: 1643 EKESEPQGDRSEFIVEFHNVGLTYKNAGAEALT----NINFSVXXXXXXXXXXXXXXXXX 1476 +++S +FI V L N GA+ + +IN + Sbjct: 467 QQDSNENLTELDFIQNIKTVNL---NIGADPMRYIVEDINLILDRKDKVLIIGESGTGKS 523 Query: 1475 SLVNLIPRFYDATVGEVIVDGINVKDYPLKKLRDKIGVVPQKAVLFKGSIRENMRWGNKN 1296 + + + Y + ++G+++ Y +R +I + + LFKG+I+EN+ G + Sbjct: 524 TFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMG-EI 582 Query: 1295 ATDEEIMEAINIAQAGEIVAQKKEGLDFLIEQGGKNLSGGQRQRFTIARAIVKKPEILIL 1116 EI A ++Q E + + + + + G NLS GQ+QR +ARAI+ +P++LIL Sbjct: 583 FDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLIL 642 Query: 1115 DDSASALD 1092 D+S S +D Sbjct: 643 DESLSNID 650 Score = 50.8 bits (120), Expect = 4e-06 Identities = 46/209 (22%), Positives = 95/209 (45%), Gaps = 1/209 (0%) Frame = -1 Query: 802 VLLFISILLAASTVALTLYVPILIGNAIDYIVGPGNVNFEVVAKILVQIAFAVGITAIFE 623 V+L S+ + VA + Y+ L+ D I+ P ++ ++ L+ I+ + I IF+ Sbjct: 170 VILLTSLFVVGLAVAGSFYIKFLV----DLII-PRSLRESLITITLIFISMVL-IRCIFD 223 Query: 622 WFMYTINNNITYQVVRDIREKAFRKIEILPLSYIDSHPHGEIVSRVIADVEQFAEGLLMG 443 + + ++Y+V +++ F K+ LP+++ ++ GE++SR D + Sbjct: 224 FVRSYLIIKLSYKVDKEMSNVYFNKVTKLPINFFENREDGEVISR-FNDGIYIKDFFSAN 282 Query: 442 FTQLFTGVVTIIATLIFMLTINIKITFIVVILTPLSL-FVANFIAKHTYSMFKLQSETRG 266 F ++ I+ + + N I F+ +IL L L +A H + E + Sbjct: 283 FVTAIIDIILILGLGVILYRTN-NILFLTIILPILLLSCLAILFFDHLKKKNQKLMEDKA 341 Query: 265 EQTSLIEEMIGNVKVVQAFSYQLEALKKF 179 + TSL+ + N+ V + + L+KF Sbjct: 342 KSTSLLINFLKNMTTVYSLNKTSFFLEKF 370 Score = 41.6 bits (96), Expect = 0.002 Identities = 63/271 (23%), Positives = 117/271 (43%), Gaps = 10/271 (3%) Frame = -1 Query: 7726 QVVRDLKKKGISILFISHRMKEVFEICDRVTVLKDGSYVCCMNISEITHEDVIRAMVGRD 7547 QV+ D G ++LFI+ + DR+ ++ S + +++ I DV+ V +D Sbjct: 413 QVLNDSMSLG-TLLFINTLAAFLLSSLDRILSMQ--SDLQQAHVASIRFFDVVNYPVQQD 469 Query: 7546 LGELYPPKSSKIEEDNYILKVENLSGNG--------FENVSFTLKKGEILGFAGLVGAGR 7391 E + E ++I ++ ++ N E+++ L + + + G G G+ Sbjct: 470 SNE-------NLTELDFIQNIKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGK 522 Query: 7390 SEVMRGLCAIDPVKRGEVYLNGEKQKFKRYKD-AVKKGICYLTEDRKNSGLFLHMSIAQN 7214 S + L + V +YLNG RY +++K I Y+ E N LF +I +N Sbjct: 523 STFAKSLSKLYKVPDKSIYLNG--LDINRYDHLSIRKRIVYIDE---NPFLFKG-TIKEN 576 Query: 7213 ISSANLEAVSK-RGWIIKKREYSLSEKYVKALSIKIPGLSYPISNLSGGNQQKCLIGKWL 7037 + + ++ I + + K S K LS SNLS G +Q+ + + + Sbjct: 577 LCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYK---LSENGSNLSTGQKQRLALARAI 633 Query: 7036 STNPKVIIMDEPTRGIDVGAKREIHNLLRSL 6944 P+V+I+DE ID + I+ L + Sbjct: 634 LHQPQVLILDESLSNIDPDNTKLIYETLHRM 664 Score = 35.8 bits (81), Expect = 0.12 Identities = 36/166 (21%), Positives = 76/166 (45%), Gaps = 2/166 (1%) Frame = -1 Query: 8164 LCGENGAGKSTLMNIVGGVFPATEGIMKFDGKIFNPKNPKDSQDAGIGFVHQELCLCPHL 7985 + GE+G GKST + ++ + + +G N + + I ++ + L Sbjct: 514 IIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR-IVYIDENPFLFKG- 571 Query: 7984 SAAENIFIGRLPSKGDKIDFKKLYEDADAILKTLDANFSSKTLV--SNLTVSEQQLVEIA 7811 + EN+ +G + + + I+ + + LD +S K SNL+ ++Q + +A Sbjct: 572 TIKENLCMGEIFDQNE-IENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALA 630 Query: 7810 KSISLNCKLLILDEPTSSLTDKETARLFQVVRDLKKKGISILFISH 7673 ++I ++LILDE S++ T +++ L + I+ I+H Sbjct: 631 RAILHQPQVLILDESLSNIDPDNTKLIYET---LHRMDCLIILITH 673 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 38.1 bits (87), Expect = 0.024 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Frame = -2 Query: 13557 LKNNGIKISMDGKGRALDNQRIERFFRSYKWEKLYLEE-CETVQQLRQITKEYVEHYNHR 13381 L GI+ S+ +G + DN E YK E ++ +T + + T E+V YNH Sbjct: 193 LAEAGIEPSVGSRGDSYDNALAETINGLYKTELIHRRAPWKTRESVELATLEWVAWYNHH 252 Query: 13380 RPHQSLDYKTPAEYYFGGYDQL 13315 R + L Y PAE Y QL Sbjct: 253 RLMEPLGYIPPAEAEANYYRQL 274 >ref|YP_025041.1|putative transposase B Length = 280 Score = 36.6 bits (83), Expect = 0.070 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Frame = -2 Query: 13542 IKISMDGKGRALDNQRIERFFRSYKWEKLY-LEECETVQQLRQITKEYVE-HYNHRRPHQ 13369 I+ S KG DN +E F S K E +Y + E + + EYV YN +R H Sbjct: 200 IRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAFYNRKRIHS 259 Query: 13368 SLDYKTPAE 13342 SL Y+TP + Sbjct: 260 SLGYQTPLQ 268 >ref|NP_620626.1|putative transposase Length = 362 Score = 35.8 bits (81), Expect = 0.12 Identities = 17/55 (30%), Positives = 30/55 (54%) Frame = -2 Query: 13503 NQRIERFFRSYKWEKLYLEECETVQQLRQITKEYVEHYNHRRPHQSLDYKTPAEY 13339 N +IERF ++Y ++ E+ L+ +Y YN R H+SL+++TP + Sbjct: 300 NGKIERFHQNYTKLFVFEEKILNAVSLQNKLNDYYYFYNFERVHKSLNFQTPFNF 354 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 34.3 bits (77), Expect = 0.35 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 5/88 (5%) Frame = -2 Query: 13557 LKNNGIKISMDGKGRALDNQRIERFFRSYKWEKLYLEECETVQQLRQITKEYVEHYNHRR 13378 LK G+ S G + DN E YK E ++ + + ++ T +V+ YN+RR Sbjct: 209 LKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRR 268 Query: 13377 PHQSLDYKTPAE----YYFG-GYDQLLA 13309 L + PAE YY G D L A Sbjct: 269 LLGRLGHTPPAEAEKAYYASIGNDDLAA 296 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 34.3 bits (77), Expect = 0.35 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Frame = -2 Query: 13560 LLKNNGIKISMDGKGRALDNQRIERFFRSYKWEKL----YLEECETVQQLRQITKEYVEH 13393 LL I+ SM +G DN +ERFFRS K E + Y+ E IT V + Sbjct: 217 LLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAA---HAITDYIVGY 273 Query: 13392 YNHRRPHQ 13369 Y+ RPH+ Sbjct: 274 YSALRPHE 281 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,901,379 Number of Sequences: 14420 Number of extensions: 1355398 Number of successful extensions: 3845 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 3024 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3842 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 6485880036 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig178 (14,007 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,946,771 Number of Sequences: 14420 Number of extensions: 1443506 Number of successful extensions: 3958 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 2981 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3954 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 6667180560 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig179 (13,767 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_803332.1|helicase 37 0.054 ref|NP_861894.1|gp27 baseplate hub subunit 35 0.16 ref|NP_524566.1|membrane protein 34 0.35 >ref|NP_803332.1|helicase Length = 423 Score = 37.0 bits (84), Expect = 0.054 Identities = 32/114 (28%), Positives = 51/114 (44%) Frame = -3 Query: 11320 TKTVTENFAVFNLTLENFSGNEISASVKDVAGNDSARDGLTKPTDVKTNAFSNFVGLRNE 11141 T V+E+ VFN L + S +I ++D+ + A+D L P V T Sbjct: 168 THQVSEH--VFNWELRDGSEEKIYERIEDICLSMKAKDYLDMPDRVDT------------ 213 Query: 11140 KPTVVITPMNRSVYREGEKEWHNDSVAFSVYAATDSAGIYSVEIKVNGKTVATD 10979 K TVV++ R VY E EK + +S A + A + ++++ V TD Sbjct: 214 KQTVVLSEKERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTD 267 >ref|NP_861894.1|gp27 baseplate hub subunit Length = 390 Score = 35.4 bits (80), Expect = 0.16 Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 19/203 (9%) Frame = -3 Query: 9940 KTEFNVVVSVSDNKPSSGLDKINYRLVSYDNGKKSEEKKGTQIIADGTAVISVPKGFK-G 9764 K + +V +S + ++ L ++ R+ + S + KG IIA I + K G Sbjct: 63 KMDGRQIVQISVSNSNTPL-QVRTRIYGCRHYSVSVDSKGDNIIAIELGTIHSIENLKFG 121 Query: 9763 QIFVEAFDNAGNKSREVTPGGFVSDD---VAPEISIXXXXXXNYSDAEGNKLYVTDMSFT 9593 + F F +AG RE+ G + D + P I+ YV D+ +T Sbjct: 122 RPF---FPDAGESIREML--GVIYKDRTLITPPINTI-------------NAYVPDIPWT 163 Query: 9592 VTISDYDSGIKEIGFSLSSEKESFERK----------STLIANKGYK--VGDVLENGWIV 9449 T DY + ++E+G + +S+K F + TLI +G K VG+ G + Sbjct: 164 STFDDYLAYVRELGLATASDKFVFVWQDILGVNMIDYDTLIGQEGIKMVVGEPNTVGQYI 223 Query: 9448 SEMDQNLV---RKVTKVFTFSSD 9389 E++ LV +TK F+ D Sbjct: 224 QELEYPLVWDFTWMTKANQFTRD 246 >ref|NP_524566.1|membrane protein Length = 535 Score = 34.3 bits (77), Expect = 0.35 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 9/84 (10%) Frame = -2 Query: 1535 FGRNLASYLTGRKFEVKHVNPV-YTSAIRLSN---PIIYKDDSYDA---YCVARVLRDMV 1377 F + S TG F+ K+V+ V Y A++L+ P ++ DS DA Y VAR D + Sbjct: 295 FTNYMQSAYTGMLFDAKNVSGVMYDLAMKLTRLGFPNEFETDSQDASVSYVVARAFADKL 354 Query: 1376 DTLQDAKHE--DIYWAIRQLVKRR 1311 T+ KHE D + A+ + RR Sbjct: 355 ATMGSKKHEILDHFEALMDVRLRR 378 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,315,201 Number of Sequences: 14420 Number of extensions: 1407890 Number of successful extensions: 4290 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 3212 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4288 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 6550212480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig180 (11,867 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_943898.1|gp44 clamp loader subunit 60 7e-09 ref|NP_899326.1|gp44 54 4e-07 ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase access... 52 1e-06 ref|NP_049665.1|gp44 clamp loader subunit, DNA polymerase access... 47 3e-05 ref|YP_195157.1|sliding clamp loader gp44 45 2e-04 ref|NP_932394.1|DNA polymerase accessory protein 43 9e-04 ref|NP_891600.1|Gp44 40 0.007 >ref|NP_943898.1|gp44 clamp loader subunit Length = 321 Score = 59.7 bits (143), Expect = 7e-09 Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 12/279 (4%) Frame = +1 Query: 9349 RKWRPLVFEDVVEQEHVVRTLRNSICSGRIAHAYLFCGTRGTGKTTMAKIFSRAVNCLNP 9528 +K+RP + + + + + + +GRI H LF + GTGKTTMA++ Sbjct: 15 QKYRPALISECILPSADIERFKGIVTTGRIPHILLFSKSPGTGKTTMARVL--------- 65 Query: 9529 KDGDPCNQCEICQGILNGSLLDVIEIDAASNNSVDDIRVLRDEVIYTPSKARY---KVYI 9699 CN+ + ++G L +DD+R D + + R KV I Sbjct: 66 -----CNEIDAEVMFISGGKL-----------RIDDLR--NDLTAFASTMTRKPGGKVII 107 Query: 9700 IDEVHMLSTGAFNALLKT-LEEPPAHVIFILATTEPHKLPATILSRCQRFDFRRIPVD-- 9870 IDE A + L++ +E ++ I+ +P + SR ++ +F D Sbjct: 108 IDEGDNKGMKAVHEELRSWMEAFSSNCSVIMTCNNVEAIPGPLKSRFRQIEFGNPTQDDK 167 Query: 9871 -----SIVKRIEYIAKESGVEIR-REASKLIAKLSDGALRDAISILDQCISLGSKELTYE 10032 ++ R E I + GV + R+A + K + LR I++LD G + E Sbjct: 168 LRMMKEMIVRCETICEMEGVVVESRKAIAALVKQNFPDLRGTITMLDSYAKSGKID---E 224 Query: 10033 DVLSVVGLVTDTFIAEVVDAIKNKEVGRVLNAVDELVME 10149 VL+ T+ + +VV +K+K++G V + V + ++ Sbjct: 225 GVLTKATQATED-MNDVVAMLKSKKLGDVRSLVPKFTVD 262 >ref|NP_899326.1|gp44 Length = 318 Score = 53.9 bits (128), Expect = 4e-07 Identities = 65/272 (23%), Positives = 115/272 (42%), Gaps = 11/272 (4%) Frame = +1 Query: 9349 RKWRPLVFEDVVEQEHVVRTLRNSICSGRIAHAYLFCGTRGTGKTTMAKIFSRAVNCLNP 9528 +K+RP +D V E V + + + +I + L + GTGKTT+A+ Sbjct: 14 QKYRPQSIKDCVLPERVRKLFQKMVDDNQIPNMLLCSSSPGTGKTTVAR----------- 62 Query: 9529 KDGDPCNQCEICQGILNGSLLDVIEIDAASNNSV----DDIRVLRDEVIYTPSKARYKVY 9696 +L +V+ ++A+S+ + +D+ V ++ + K Sbjct: 63 -------------AVLADMGYEVLFVNASSSRGIGLVQNDLPAFCSTVSFSGNP---KAV 106 Query: 9697 IIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKLPATILSRCQRFDF------RR 9858 I+DE L+ A AL +E+ +V F+L K+ I SR Q F+F + Sbjct: 107 ILDEADNLTPDAQKALRGLIEQYSKNVRFVLTCNYAQKILTPIRSRLQEFEFVYNKEEQL 166 Query: 9859 IPVDSIVKRIEYIAKESGVEIRREA-SKLIAKLSDGALRDAISILDQCISLGSKELTYED 10035 V ++ R I K+ GV + A K + K + R I L G + E Sbjct: 167 SCVKQMIVRSMQICKQEGVSVTNAAVLKELVKRNYPDNRKTIVSLQNYARNG---VIDEG 223 Query: 10036 VLSVVGLVTDTFIAEVVDAIKNKEVGRVLNAV 10131 +LS + D I+E++DA+K+K+ V + + Sbjct: 224 ILSEITANDD--ISEMLDALKSKDFKTVRSLI 253 >ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase accessory protein Length = 320 Score = 52.0 bits (123), Expect = 1e-06 Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 9/265 (3%) Frame = +1 Query: 9343 LYRKWRPLVFEDVVEQEHVVRTLRNSICSGRIAHAYLFCGTRGTGKTTMAKIFSRAVNCL 9522 L +K+RP ++ + + T ++ + G++ H L + GTGKTT+AK Sbjct: 11 LEQKYRPSSIDECILPAYDHETFKSLVSKGKLPHIILHSPSPGTGKTTVAKAL------- 63 Query: 9523 NPKDGDPCNQCEICQGILNGSLLDVIEIDAASNNSVDDIR-VLRDEVIYTPSKARYKVYI 9699 CN +NG S+ +D +R L + + KV + Sbjct: 64 -------CNDINAEMMFVNG-----------SDCKIDFVRGPLTAFARSVSMEGKPKVIV 105 Query: 9700 IDEVHMLSTGAFNALLKT-LEEPPAHVIFILATTEPHKLPATILSRCQRFDFRR------ 9858 IDE L+T +EE ++ I+ + + SRC+ +F R Sbjct: 106 IDEFDRSGLAESQRHLRTFMEEFSSNCSIIITANNIDGIIEPLRSRCRVIEFGRPTEEDK 165 Query: 9859 -IPVDSIVKRIEYIAKESGVEIRREASKLIAKLSDGALRDAISILDQCISLGSKELTYED 10035 + ++ R+ I K +EI K++A L D + Q SK + Sbjct: 166 ISMMKKMIHRMVEICKNENIEI--ADMKVVAALVKKNFPDFRRTIGQLDQYSSKGVLDAG 223 Query: 10036 VLSVVGLVTDTFIAEVVDAIKNKEV 10110 +LS+V T +++V++A+KNK++ Sbjct: 224 ILSIVTNDRGT-VSDVIEAMKNKDI 247 >ref|NP_049665.1|gp44 clamp loader subunit, DNA polymerase accessory protein Length = 319 Score = 47.4 bits (111), Expect = 3e-05 Identities = 65/268 (24%), Positives = 110/268 (41%), Gaps = 12/268 (4%) Frame = +1 Query: 9343 LYRKWRPLVFEDVVEQEHVVRTLRNSICSGRIAHAYLFCGTRGTGKTTMAKIFSRAVNC- 9519 L +K+RP ++ + T ++ G+I H L + GTGKTT+AK VN Sbjct: 11 LEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNAD 70 Query: 9520 LNPKDGDPCNQCEICQGILNGSLLDVIEIDAASNNSVDDIRVLRDEVIYTPSKARYKVYI 9699 + +G C + + +G L + AS S D R KV + Sbjct: 71 MMFVNGSDC-KIDFVRGPLT---------NFASAASFD---------------GRQKVIV 105 Query: 9700 IDEVHMLSTGAFNALLKT-LEEPPAHVIFILATTEPHKLPATILSRCQRFDFRRIPVD-- 9870 IDE L++ +E ++ I+ + + SRC+ F + P D Sbjct: 106 IDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQ-PTDED 164 Query: 9871 ------SIVKRIEYIAKESGVEIRREASKLIAKLSDGALRDAISILDQCISLGSKELTYE 10032 +++R+ I K G+ I K++A L D + + S SK + Sbjct: 165 KIEMMKQMIRRLTEICKHEGIAI--ADMKVVAALVKKNFPDFRKTIGELDSYSSKGVLDA 222 Query: 10033 DVLSVVGLVTDT--FIAEVVDAIKNKEV 10110 +LS LVT+ I +V++++KNK+V Sbjct: 223 GILS---LVTNDRGAIDDVLESLKNKDV 247 >ref|YP_195157.1|sliding clamp loader gp44 Length = 315 Score = 44.7 bits (104), Expect = 2e-04 Identities = 64/277 (23%), Positives = 109/277 (39%), Gaps = 7/277 (2%) Frame = +1 Query: 9352 KWRPLVFEDVVEQEHVVRTLRNSICSGRIAHAYLFCGTRGTGKTTMAKIFSRAVNCLNPK 9531 ++RP +D + + + + + G I + L G+ G GKTT+AK Sbjct: 11 QYRPKSVDDCILPTSIKNSFKAFVEQGEIPNL-LLTGSAGVGKTTIAKAV---------- 59 Query: 9532 DGDPCNQCEICQGILNGS----LLDVIEIDAASNNSVDDIRVLRDEVIYTPSKARYKVYI 9699 C Q ++NGS LD + + +R V T S A +KV I Sbjct: 60 ----CEQIGASYIVINGSDEGRFLDTVR---------NRVRQFATTVSLT-SGAPHKVVI 105 Query: 9700 IDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKLPATILSRCQRFDFRRIPVDSIV 9879 IDE + +L +EE + FI +K+ + SRC DFR + Sbjct: 106 IDEADNTTHDVQLSLRTAVEEFHGNCRFIFTCNFQNKIIEPLHSRCTVIDFRIKKEQEQI 165 Query: 9880 KRIEYIAKESGVEIRREA---SKLIAKLSDGALRDAISILDQCISLGSKELTYEDVLSVV 10050 + ++ + G+ + K+IAKL D ++++ T + V+ Sbjct: 166 LQGQFFVRLKGILDDNKIVYDDKIIAKLIKRYYPDWRRLINEA---QRHAATGKIDTGVL 222 Query: 10051 GLVTDTFIAEVVDAIKNKEVGRVLNAVDELVMEGKNI 10161 + D + +++ A+KNKE V V E + NI Sbjct: 223 VDIADINLDQLLSALKNKEFTTVRKWVVENIDNDPNI 259 >ref|NP_932394.1|DNA polymerase accessory protein Length = 319 Score = 42.7 bits (99), Expect = 9e-04 Identities = 62/268 (23%), Positives = 105/268 (39%), Gaps = 15/268 (5%) Frame = +1 Query: 9352 KWRPLVFEDVVEQEHVVRTLRNSICSGRIAHAYLFCGTRGTGKTTMAKIFSRAVNCLNPK 9531 K+RP ++ + EH + + + SGRI + L + GTGKTT+A+ Sbjct: 14 KYRPGNIDECILPEHDKKIFKAIVKSGRIPNIILHSPSPGTGKTTVARAL---------- 63 Query: 9532 DGDPCNQCEICQGILNGSLLDVIEIDAA---SNNSVDDIRVLRDEVIYTPSKARY----K 9690 V EIDA N + I +RD + S + K Sbjct: 64 ---------------------VAEIDAEFLFVNGADAKIDFVRDVMTPFASSKTFCKGGK 102 Query: 9691 VYIIDEVHMLSTGAFNALLKT-LEEPPAHVIFILATTEPHKLPATILSRCQRFDFRRIP- 9864 V I+DE L++ +E + FI+ + + + SRC+ F + Sbjct: 103 VIIVDEFDRAGLADSQRHLRSFMEAHSKNCTFIITANDLGGIIPALQSRCRVIQFGKADQ 162 Query: 9865 ------VDSIVKRIEYIAKESGVEIRREASKLIAKLSDGALRDAISILDQCISLGSKELT 10026 + ++ R E I +E+ E K+IA L D +++ S+ Sbjct: 163 SDKINMMKQMIVRAEEICAAENIEV--EDRKVIAALVKKNFPDFRKTVNEMDFYASEGKI 220 Query: 10027 YEDVLSVVGLVTDTFIAEVVDAIKNKEV 10110 +LS+V L T I +VV+AIK +++ Sbjct: 221 DSGILSLV-LNTRNDIDQVVEAIKARDI 247 >ref|NP_891600.1|Gp44 Length = 324 Score = 39.7 bits (91), Expect = 0.007 Identities = 60/269 (22%), Positives = 107/269 (39%), Gaps = 12/269 (4%) Frame = +1 Query: 9349 RKWRPLVFEDVVEQEHVVRTLRNSICSGRIAHAYLFCGTRGTGKTTMAKIFSRAVNCLNP 9528 +K+RP + + E + + GRI L + GTGKTT+AK Sbjct: 13 QKYRPKSISECILPEADKKIFAQIVKQGRIPSMILHSPSPGTGKTTVAKAL--------- 63 Query: 9529 KDGDPCNQCEICQGILNGSLLDVIEIDAASNNSVDDI-RVLRDEVIYTPSKARYKVYIID 9705 C + +NG+ D + D+I R + + + + KV IID Sbjct: 64 -----CEDVGVDYLFVNGA-------DCKIDFIRDEITRFAQSVSLDEEKREKGKVVIID 111 Query: 9706 EVHMLSTGAFNALLKTLEEPPA-HVIFILATTEPHKLPATILSRCQRFDFRRIPVD---- 9870 E L++ E + +V FI+ + + + SR F D Sbjct: 112 EYDRAGLADAQRHLRSFSEAYSNNVTFIITANDLEGIIPALRSRFDPITFGSPTKDDQLR 171 Query: 9871 ---SIVKRIEYIAKESGVEIRREASKLIAKL---SDGALRDAISILDQCISLGSKELTYE 10032 ++ R + I + GV + E +++A+L + R + +LD+ G + Sbjct: 172 MMKEMIVRCKAILDKEGVPV--EEMRVLAELVKQNFPDFRRVMKLLDRYAKHGKID---A 226 Query: 10033 DVLSVVGLVTDTFIAEVVDAIKNKEVGRV 10119 VLS+V ++T + +VV+A+K K+ V Sbjct: 227 GVLSMVIESSNTEVTDVVEALKTKQFANV 255 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,026,537 Number of Sequences: 14420 Number of extensions: 1336921 Number of successful extensions: 3812 Number of sequences better than 0.5: 7 Number of HSP's better than 0.5 without gapping: 2948 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3808 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 5681652808 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig181 (20,080 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046860.1|DNA polymerase 38 0.046 ref|YP_195120.1|virion structural protein 37 0.078 ref|YP_164726.1|orf91 36 0.17 >ref|NP_046860.1|DNA polymerase Length = 607 Score = 37.7 bits (86), Expect = 0.046 Identities = 21/64 (32%), Positives = 35/64 (54%) Frame = -3 Query: 13817 GKAVINNSVLMNDFGLDEVSSTHQVGDAFDSADHAAMAWGFMYNGKSITDNIEYASAIYE 13638 G+ + +VL+N++G+++V++T V +AF+ H A F +GK D YA I Sbjct: 253 GEQQVWEAVLLNEYGIEKVNATEDVAEAFEELGHKFTA--FTDSGKRKVDKGFYADMIAA 310 Query: 13637 DGGK 13626 G K Sbjct: 311 GGEK 314 >ref|YP_195120.1|virion structural protein Length = 1251 Score = 37.0 bits (84), Expect = 0.078 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 19/158 (12%) Frame = -3 Query: 18380 TYILKVQKGITYKYDQAGNLISISDSNSNEIQFKYNREGLLSSVMSPGGKLLMFS----- 18216 T ++ V GI Y Q G+++S++ ++ G ++ S G + FS Sbjct: 222 TTVIIVNDGIDY---QNGDILSVNSADVGG-----TGSGFQYTITSNPGTPIDFSIASYG 273 Query: 18215 --YEGGRIVSITDHTGRNLKYKYDEKGNLTQVVYPDGGK--------ITYAYDNIGLISI 18066 Y G I+S+TD+ NL+Y+ + G + + +GG + D G+IS Sbjct: 274 DGYSAGDILSVTDYGTTNLQYQISQIGQVKNFQFQNGGSGYIQGDILTVDSQDLAGVISY 333 Query: 18065 TDQNGN----TYVQNTYDEKGRVVRQLDHENNELIIEY 17964 + +N T+V N V + + NN I+Y Sbjct: 334 SVENKELHKITFVNNISPSVVPVGATVKYNNNIGFIQY 371 >ref|YP_164726.1|orf91 Length = 171 Score = 35.8 bits (81), Expect = 0.17 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 12/96 (12%) Frame = -3 Query: 18002 QLDHENNELIIEY---DEENRENTF-----KWIKSGITRVYKYNTDMLLTEIRYDDGSVQ 17847 Q+ ++N LI+ Y D ++ +N +WI SG+ YK N +L + D G+ Sbjct: 52 QIFVKSNSLILLYPAKDTDSDDNVIIYKNSRWIPSGVDDAYKNNATFVLLSYKIDAGTTD 111 Query: 17846 KYTYDENLNRNSET--DRNGNTTYK--KYDDKGNLI 17751 +T+ + R T + T K + DKG L+ Sbjct: 112 NFTWRQTGIRKGTTPVEAGSKTLLKPSEVSDKGKLL 147 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,475,942 Number of Sequences: 14420 Number of extensions: 2286660 Number of successful extensions: 7107 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 4438 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7092 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 9433723902 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig182 (12,901 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_025041.1|putative transposase B 69 1e-11 ref|NP_859396.1|hypothetical protein 67 5e-11 ref|NP_536395.1|ISBt3 transposase subunit protein 64 3e-10 ref|NP_958229.1|gene 55 protein 60 4e-09 ref|NP_620626.1|putative transposase 36 0.087 >ref|YP_025041.1|putative transposase B Length = 280 Score = 68.9 bits (167), Expect = 1e-11 Identities = 46/129 (35%), Positives = 67/129 (51%), Gaps = 4/129 (3%) Frame = +3 Query: 57 LVSRYIVGFELSNTLDKTFVIEAIQKAIKR--YGKPEIMNSDQGSQFTSDDYINLLKNNG 230 L SR I+G+ S +D V++ ++ A+K I+++D GSQ+TSDDY L Sbjct: 140 LHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIHTDLGSQYTSDDYNQRLTELH 199 Query: 231 IKISMDGKGRALDNQRIERFFRSYKWEKLY-LEECETVQQLRQITKEYVE-HYNHRRPHQ 404 I+ S KG DN +E F S K E +Y + E + + EYV YN +R H Sbjct: 200 IRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAFYNRKRIHS 259 Query: 405 SLDYKTPAE 431 SL Y+TP + Sbjct: 260 SLGYQTPLQ 268 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 67.0 bits (162), Expect = 5e-11 Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 6/138 (4%) Frame = +3 Query: 69 YIVGFELSNTLDKTFVIEAIQKAI-KRYGKPEIMNSDQGSQFTSDDYINLLKNNGIKISM 245 YIVG+ +S++++ TFV++A+++A+ R I +SD+GSQ+ S Y LK G+ S Sbjct: 159 YIVGWRVSSSMETTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLAST 218 Query: 246 DGKGRALDNQRIERFFRSYKWEKLYLEECETVQQLRQITKEYVEHYNHRRPHQSLDYKTP 425 G + DN E YK E ++ + + ++ T +V+ YN+RR L + P Sbjct: 219 GSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPP 278 Query: 426 AE----YYFG-GYDQLLA 464 AE YY G D L A Sbjct: 279 AEAEKAYYASIGNDDLAA 296 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 64.3 bits (155), Expect = 3e-10 Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Frame = +3 Query: 63 SRYIVGFELSNTLDKTFVIEAIQKAIKRYGKPE----IMNSDQGSQFTSDDYINLLKNNG 230 +R IVG+ +S+++ FV++A+++A+ E I +SD+GSQ+ S Y L G Sbjct: 138 ARRIVGWRVSSSMTTDFVLDALEQALYARQPGEDGTLIHHSDRGSQYVSIRYSERLAEAG 197 Query: 231 IKISMDGKGRALDNQRIERFFRSYKWEKLYLE-ECETVQQLRQITKEYVEHYNHRRPHQS 407 I+ S+ +G + DN E YK E ++ +T + + T E+V YNH R + Sbjct: 198 IEPSVGSRGDSYDNALAETINGLYKTELIHRRAPWKTRESVELATLEWVAWYNHHRLMEP 257 Query: 408 LDYKTPAEYYFGGYDQL 458 L Y PAE Y QL Sbjct: 258 LGYIPPAEAEANYYRQL 274 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 60.5 bits (145), Expect = 4e-09 Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 6/122 (4%) Frame = +3 Query: 57 LVSRYIVGFELSNTLDKTFVIEAIQKAIKRYGKPE--IMNSDQGSQFTSDDYINLLKNNG 230 L +R VG+ +S + D ++A++ A + GKP + +SDQGS +TS + LL Sbjct: 163 LFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQ 222 Query: 231 IKISMDGKGRALDNQRIERFFRSYKWEKL----YLEECETVQQLRQITKEYVEHYNHRRP 398 I+ SM +G DN +ERFFRS K E + Y+ E IT V +Y+ RP Sbjct: 223 IRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAA---HAITDYIVGYYSALRP 279 Query: 399 HQ 404 H+ Sbjct: 280 HE 281 >ref|NP_620626.1|putative transposase Length = 362 Score = 36.2 bits (82), Expect = 0.087 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 17/123 (13%) Frame = +3 Query: 117 IEAIQKAIKRYGKP-----EIMNSDQGSQFTSD------------DYINLLKNNGIKISM 245 I+A++KAI + + +D GS+F ++ ++ L + I Sbjct: 232 IDAVKKAISDFKNIFGIIITRIRTDNGSEFINNYRNNQKISVKKTNFTQFLTDKNILHQT 291 Query: 246 DGKGRALDNQRIERFFRSYKWEKLYLEECETVQQLRQITKEYVEHYNHRRPHQSLDYKTP 425 N +IERF ++Y ++ E+ L+ +Y YN R H+SL+++TP Sbjct: 292 TPVRSPQSNGKIERFHQNYTKLFVFEEKILNAVSLQNKLNDYYYFYNFERVHKSLNFQTP 351 Query: 426 AEY 434 + Sbjct: 352 FNF 354 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,628,190 Number of Sequences: 14420 Number of extensions: 1323705 Number of successful extensions: 3806 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 2982 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3798 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 6189576032 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig183 (6074 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_038305.1|ORF5 47 2e-05 ref|NP_075485.1|hypothetical protein 46 5e-05 ref|NP_803371.1|dnaC 46 5e-05 ref|NP_061611.1|orf 21 45 9e-05 ref|NP_862860.1|gp21 42 6e-04 ref|NP_958645.1|77ORF013 40 0.003 ref|YP_025058.1|DnaC 38 0.011 ref|NP_510917.1|similar to Escherichia coli DnaC 38 0.014 ref|NP_839903.1|putative DnaC protein 36 0.042 ref|NP_076710.1|DnaC 36 0.042 ref|NP_945251.1|DnaC protein 34 0.16 ref|NP_944257.1|putative DnaC 33 0.27 >ref|NP_038305.1|ORF5 Length = 260 Score = 47.4 bits (111), Expect = 2e-05 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 4/150 (2%) Frame = -1 Query: 2045 NVILIGNSGVGKTHIA----TALGYEACRQGMKVKFYTAAGLINELLAAQQEYRLNKLEK 1878 N++LIGN+GVGK+H+A AL + G+ + I E + EY E Sbjct: 121 NIVLIGNTGVGKSHLAYSALKALSDHTKKMGVFINVVDLLAKIKEDFNLEAEYIRRISEA 180 Query: 1877 QWLAPHLVILDELGYVPFSKIGAELLFQFCSSRYERGSLIITTNLEFPRWTEVLGDEQMT 1698 +WL +LD+LG ++ + +L+ + +R IITTNL P+ ++LG Sbjct: 181 EWL-----VLDDLGTEKVTEWSSGILYSILN---KRTKTIITTNLS-PQ--DILG--TYG 227 Query: 1697 AALLDRLTHNAHILNINGESYRFKQALSKQ 1608 + R+ + N Y+FK K+ Sbjct: 228 KRVYSRIFKKTGLGTTNEHVYQFKTQQDKR 257 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 45.8 bits (107), Expect = 5e-05 Identities = 45/218 (20%), Positives = 103/218 (47%), Gaps = 7/218 (3%) Frame = -1 Query: 2252 NNLDYEEYLLCVLEQEVHQRENNRIQRGIRQAGF-PVIK--TIESFDFLAIPSLN-KPRV 2085 N +Y++ C + +E + + +I Q+ P ++ T++++ ++ K Sbjct: 47 NGYEYKDGCKCEIYEEYKRNKQRKINNIFNQSNVNPSLRDATVKNYKPQNEKQVHAKQTA 106 Query: 2084 LKLMQGEYIRRRENVILIGNSGVGKTHIATALGYEACRQGMKVKFYTAAGLINELLAAQQ 1905 ++ +QG + +++IL G+ G GK+H+A A+ +G V F L++ + A Sbjct: 107 IEYVQGFSTKEPKSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYN 166 Query: 1904 EYRL---NKLEKQWLAPHLVILDELGYVPFSKIGAELLFQFCSSRYERGSLIITTNLEFP 1734 + + ++L + L++LD++G V ++ LF +R + + I TTN Sbjct: 167 KNAVETTDELVRLLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTNFSDK 224 Query: 1733 RWTEVLGDEQMTAALLDRLTHNAHILNINGESYRFKQA 1620 + + +++ + R+ HNA + + G+ +R + A Sbjct: 225 ELNQNMNWQRINS----RMKHNARKVRVIGDDFRERDA 258 >ref|NP_803371.1|dnaC Length = 259 Score = 45.8 bits (107), Expect = 5e-05 Identities = 45/218 (20%), Positives = 103/218 (47%), Gaps = 7/218 (3%) Frame = -1 Query: 2252 NNLDYEEYLLCVLEQEVHQRENNRIQRGIRQAGF-PVIK--TIESFDFLAIPSLN-KPRV 2085 N +Y++ C + +E + + +I Q+ P ++ T++++ ++ K Sbjct: 47 NGYEYKDGCKCEIYEEYKRNKQRKINNIFNQSNVNPSLRDATVKNYKPQNEKQVHAKQTA 106 Query: 2084 LKLMQGEYIRRRENVILIGNSGVGKTHIATALGYEACRQGMKVKFYTAAGLINELLAAQQ 1905 ++ +QG + +++IL G+ G GK+H+A A+ +G V F L++ + A Sbjct: 107 IEYVQGFSTKEPKSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYN 166 Query: 1904 EYRL---NKLEKQWLAPHLVILDELGYVPFSKIGAELLFQFCSSRYERGSLIITTNLEFP 1734 + + ++L + L++LD++G V ++ LF +R + + I TTN Sbjct: 167 KNAVETTDELVRLLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTNFSDK 224 Query: 1733 RWTEVLGDEQMTAALLDRLTHNAHILNINGESYRFKQA 1620 + + +++ + R+ HNA + + G+ +R + A Sbjct: 225 ELNQNMNWQRINS----RMKHNARKVRVIGDDFRERDA 258 >ref|NP_061611.1|orf 21 Length = 257 Score = 45.1 bits (105), Expect = 9e-05 Identities = 38/162 (23%), Positives = 79/162 (48%), Gaps = 3/162 (1%) Frame = -1 Query: 2096 KPRVLKLMQGEYIRRRENVILIGNSGVGKTHIATALGYEACRQGMKVKFYTAAGLINELL 1917 K ++ +QG + +++IL G+ G GK+H+A A+ +G V F L++ + Sbjct: 101 KQTAIEYVQGFSTKEPKSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIQMLMDRIK 160 Query: 1916 AAQQEYRL---NKLEKQWLAPHLVILDELGYVPFSKIGAELLFQFCSSRYERGSLIITTN 1746 AA + + ++L + L++LD++G V ++ LF +R + + I TTN Sbjct: 161 AAYNKNAVETTDELVRLLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTN 218 Query: 1745 LEFPRWTEVLGDEQMTAALLDRLTHNAHILNINGESYRFKQA 1620 + + +++ + R+ HNA + + G+ +R + A Sbjct: 219 FSDKELNQNMNWQRINS----RMKHNARKVRVIGDDFRERDA 256 >ref|NP_862860.1|gp21 Length = 256 Score = 42.4 bits (98), Expect = 6e-04 Identities = 40/168 (23%), Positives = 79/168 (47%), Gaps = 4/168 (2%) Frame = -1 Query: 2138 TIESFDFLAIPSLNKPRVLKLMQGEYIR-RRENVILIGNSGVGKTHIATALGYEACRQGM 1962 T+++FD K +K + E+ R N++ G +G GK+H+A A+ Sbjct: 88 TLDNFDTPTEKEAEKLAFVKRICREWSEGARNNIVFQGEAGTGKSHLAFAMMKYLSETTK 147 Query: 1961 KVK-FYTAAGLINELLA--AQQEYRLNKLEKQWLAPHLVILDELGYVPFSKIGAELLFQF 1791 ++ F L+ ++ A +Q+E+ +NK+ + ++LD+LG S+ +L+ Sbjct: 148 EIAIFINVTDLLMKIKADFSQEEFLVNKI----ASAKFLVLDDLGMEKDSEWSFSILYNI 203 Query: 1790 CSSRYERGSLIITTNLEFPRWTEVLGDEQMTAALLDRLTHNAHILNIN 1647 + +R + +ITTNL + G M+ L + N+H++ N Sbjct: 204 LN---KRANTVITTNLTAQEIQKRYGRPFMSR--LMKGVDNSHLMVFN 246 >ref|NP_958645.1|77ORF013 Length = 259 Score = 40.0 bits (92), Expect = 0.003 Identities = 43/218 (19%), Positives = 101/218 (46%), Gaps = 7/218 (3%) Frame = -1 Query: 2252 NNLDYEEYLLCVLEQEVHQRENNRIQRGIRQAGF-PVIK--TIESFDFLAIPSLN-KPRV 2085 N +Y++ C + +E + + +I Q+ P ++ T++++ ++ K Sbjct: 47 NGYEYKDGCKCEIYEEYKRNKQRKINNIFNQSNVNPSLRDATVKNYKPQNEKQVHAKQTA 106 Query: 2084 LKLMQGEYIRRRENVILIGNSGVGKTHIATALGYEACRQGMKVKFYTAAGLINELLAAQQ 1905 ++ +QG + +++IL G+ G GK+H+A A+ +G V F L++ + A Sbjct: 107 IEYVQGFSTKEPKSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYN 166 Query: 1904 EYRL---NKLEKQWLAPHLVILDELGYVPFSKIGAELLFQFCSSRYERGSLIITTNLEFP 1734 + + ++L + L++LD++G V ++ LF +R + + I TTN Sbjct: 167 KNAVETTDELVRLLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTNFSDK 224 Query: 1733 RWTEVLGDEQMTAALLDRLTHNAHILNINGESYRFKQA 1620 + + +++ + R+ A + + G+ +R + A Sbjct: 225 ELNQNMNWQRINS----RMKKRARKVRVIGDDFRERDA 258 >ref|YP_025058.1|DnaC Length = 260 Score = 38.1 bits (87), Expect = 0.011 Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 18/121 (14%) Frame = -1 Query: 2048 ENVILIGNSGVGKTHIATALGYEACRQGMKVKFYTAAGLIN----ELLAAQQEYRLNKLE 1881 ENVIL G G GKT +A A+ +G F + A L N + A RL +E Sbjct: 102 ENVILFGPRGAGKTSLALAMLTSLRDEGQSGLFISTAELSNLMGLQYDAPDVRLRLVGIE 161 Query: 1880 KQWLAPHLVILDELG--------YVPFSKIGAELLFQFCSSRYE------RGSLIITTNL 1743 + +++LD+ G P + EL+++ ++R + R S IITTN Sbjct: 162 RAMKEAGVLLLDDFGTEGGMKLDIKPVRRDMQELIYRVANARLDFESNRPRLSTIITTNN 221 Query: 1742 E 1740 E Sbjct: 222 E 222 >ref|NP_510917.1|similar to Escherichia coli DnaC Length = 259 Score = 37.7 bits (86), Expect = 0.014 Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 3/162 (1%) Frame = -1 Query: 2096 KPRVLKLMQGEYIRRRENVILIGNSGVGKTHIATALGYEACRQGMKVKFYTAAGLINELL 1917 K ++ +QG + +++I G+ G GK+H+A A+ +G V F L++ + Sbjct: 103 KQSAIEYVQGFSTKEPKSLIFQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIK 162 Query: 1916 AAQQEYRL---NKLEKQWLAPHLVILDELGYVPFSKIGAELLFQFCSSRYERGSLIITTN 1746 A + + ++L K L++LD++G V ++ LF +R + + I TTN Sbjct: 163 ATYNKNAVETTDELVKLLSEIDLLVLDDMG-VENTEHTINKLFSIVDNRVGKNN-IFTTN 220 Query: 1745 LEFPRWTEVLGDEQMTAALLDRLTHNAHILNINGESYRFKQA 1620 + + +++ + R+ A + + G+ +R + A Sbjct: 221 FSDKELNQNMNWQRINS----RMKKRARKVRVIGDDFRERDA 258 >ref|NP_839903.1|putative DnaC protein Length = 294 Score = 36.2 bits (82), Expect = 0.042 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 16/144 (11%) Frame = -1 Query: 2126 FDFLAIPSLNKPRVLKLMQG---EYIR-RRENVILIGNSGVGKTHIATALGYEACRQGMK 1959 F+ SL + VL Q EY + +R N + +G +G GK+H+A A+ E Sbjct: 115 FNTFKANSLEEQNVLNQAQRIAREYTQGQRFNTVFVGGAGRGKSHLAMAILQEVNENLKD 174 Query: 1958 VKFYTAAGLINELLAA---QQEYRLNKLEKQWLAP-----HLVILDELG-YVPFSKIGA- 1809 KF T I+EL+ Y K E++ L L+++D+LG FSK + Sbjct: 175 NKFSTLFINISELIREIKNSWNYSDTKAEEERLTTLMRTVDLLVIDDLGTESTFSKDNSW 234 Query: 1808 --ELLFQFCSSRYERGSLIITTNL 1743 +++ ++R G+ IIT+NL Sbjct: 235 VQGVIYNIYNAR--EGNTIITSNL 256 >ref|NP_076710.1|DnaC Length = 294 Score = 36.2 bits (82), Expect = 0.042 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 16/144 (11%) Frame = -1 Query: 2126 FDFLAIPSLNKPRVLKLMQG---EYIR-RRENVILIGNSGVGKTHIATALGYEACRQGMK 1959 F+ + L + VL Q EY + +R N + +G +G GK+H+A A+ E Sbjct: 115 FNTFKVNGLEEQNVLNQAQRIAREYTQGQRFNTVFVGGAGRGKSHLAMAILQEVNENLKD 174 Query: 1958 VKFYTAAGLINELLAA---QQEYRLNKLEKQWLAP-----HLVILDELG-YVPFSKIGA- 1809 KF T I+EL+ Y K E++ L L+++D+LG FSK + Sbjct: 175 DKFSTLFINISELIREIKNSWNYSDTKAEEERLTTLMRTVDLLVIDDLGTESTFSKDNSW 234 Query: 1808 --ELLFQFCSSRYERGSLIITTNL 1743 +++ ++R G+ IIT+NL Sbjct: 235 VQGVIYNIYNAR--EGNTIITSNL 256 >ref|NP_945251.1|DnaC protein Length = 270 Score = 34.3 bits (77), Expect = 0.16 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 10/124 (8%) Frame = -1 Query: 2084 LKLMQGEYIRRRENVILIGNSGVGKTHIATALG------YEACRQGMKVKFYTAAGLINE 1923 L++++ + R N +++G +G GKTH+A A+ ++A V F + + Sbjct: 111 LRVVRHYFNDGRGNAVIVGQAGRGKTHLAIAIAKKLNIDFKANNNPKSVLFMNVPAMFQK 170 Query: 1922 LLAAQQEYRLNKLEKQWL----APHLVILDELGYVPFSKIGAELLFQFCSSRYERGSLII 1755 + + + + + +WL +ILD+ G S+ + L+ S R I+ Sbjct: 171 IQSGFNK-KDARTTDEWLDLLKKVDYLILDDFGKGDQSQWKQDFLYNLLDS---RDKTIV 226 Query: 1754 TTNL 1743 TTNL Sbjct: 227 TTNL 230 >ref|NP_944257.1|putative DnaC Length = 265 Score = 33.5 bits (75), Expect = 0.27 Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 12/218 (5%) Frame = -1 Query: 2243 DYEEYLLCVLEQEVHQRENNRIQRGIRQAGFPVIKTIESFDFLAIPSLNKPRVLKLMQG- 2067 + EE E+ V Q RI+ + +G P+ +F+ + + L + + Sbjct: 57 EQEELEARAREERVRQE---RIEARLNASGIPLAFRDRTFENFVAETDEQRYALDVARSF 113 Query: 2066 ------EYIRRRENVILIGNSGVGKTHIATALGYEACRQGMKVKFYTAAGLINELLAAQQ 1905 +++ + +I GN G GK+H+A A+ R + + A LI + A + Sbjct: 114 AENFWTKHLPAGDFLIFGGNPGTGKSHLALAIQQYVMRHSTAM-YLDAMALIRRVRATWR 172 Query: 1904 ----EYRLNKLEKQWLAPHLVILDELGYVPFSKIGAELLFQFCSSRY-ERGSLIITTNLE 1740 + L L+ +DE+G + ++F+ + RY + I+ TNL Sbjct: 173 RDAPQSEEEVLHTLGFTVDLLAIDEIGVQRGTDDEQAIVFEIINRRYRDLRPTILMTNLN 232 Query: 1739 FPRWTEVLGDEQMTAALLDRLTHNAHILNINGESYRFK 1626 + LG A +DRL +L S+R K Sbjct: 233 GAGLKDFLG-----ARTMDRLYERGTMLPFMWPSHRRK 265 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,988,893 Number of Sequences: 14420 Number of extensions: 572996 Number of successful extensions: 1618 Number of sequences better than 0.5: 12 Number of HSP's better than 0.5 without gapping: 1440 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1617 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2976449562 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig184 (10,276 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061653.1|transposase 65 1e-10 ref|NP_040341.1|putative transposase 40 0.005 ref|NP_046615.1|unknown 38 0.018 ref|NP_700399.1|hypothetical protein 36 0.091 >ref|NP_061653.1|transposase Length = 328 Score = 65.5 bits (158), Expect = 1e-10 Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 1/135 (0%) Frame = +3 Query: 9807 FKHLSVYERGQIAALLKEGKSQRYIANKLGRSPSTISREIKRGTTMQMRTDLSTYKVYFP 9986 + HL++ ER +I L +E S R IA KL RS STISREI R Q Y Sbjct: 16 YNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISRNNLNQS---------YQA 66 Query: 9987 ETGQAVYEKNRMNCGAKRKLA-QVEDFLKFAEDKILREKWSPDAVVGLCRRDPKWQNSTI 10163 ET Q YE R CG + ++ + +K+ L+ WSP+ +VG ++ Sbjct: 67 ETAQKNYETKRKLCGRPTRFTPELGNIIKY----YLKCHWSPEQIVGRLLQNQ------- 115 Query: 10164 VCTKTLYNYIDLGLI 10208 +C KT+Y +I+ +I Sbjct: 116 ICFKTIYRWINSNMI 130 >ref|NP_040341.1|putative transposase Length = 322 Score = 40.0 bits (92), Expect = 0.005 Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 8/140 (5%) Frame = +3 Query: 9807 FKHLSVYERGQIAALL-------KEGKSQ-RYIANKLGRSPSTISREIKRGTTMQMRTDL 9962 + HLS ++ ++ LL K G+ IA L R STI REIKR T+ + Sbjct: 2 YSHLSFMDKVKLEQLLLSKIFLKKNGEQNISAIAKYLNRHRSTILREIKRFKTID---EY 58 Query: 9963 STYKVYFPETGQAVYEKNRMNCGAKRKLAQVEDFLKFAEDKILREKWSPDAVVGLCRRDP 10142 S YK + + YEK + N ++ E+ L F + SP ++ R Sbjct: 59 SAYK-----SDKMYYEKRKKN---NKRFKFTEEQLNFIHLRFNVYHDSPSELI--YRYFL 108 Query: 10143 KWQNSTIVCTKTLYNYIDLG 10202 K++ VC KTLY +I LG Sbjct: 109 KFKVKFPVCVKTLYKWIRLG 128 >ref|NP_046615.1|unknown Length = 839 Score = 38.1 bits (87), Expect = 0.018 Identities = 59/322 (18%), Positives = 134/322 (41%), Gaps = 60/322 (18%) Frame = -2 Query: 9450 QFALNIKDLGVSKNEKSYIAITHIDGNRMGKRISNLRESFRSKYNSE-----NIKEINEQ 9286 Q +I D G N + Y+ T G K+ +++S KY + +++ IN Q Sbjct: 124 QILRDIIDKGFIHNNEKYVYFTSSAGQIRTKKSCFIKQSTLDKYQNALTCGLSVEHINAQ 183 Query: 9285 YINALNQFS--------------IDIDKA-----FKTAFNKMVETVEKNRENLEKEGMEL 9163 +++N+++ IDIDKA +T + +V+ ++++ + ++ M+ Sbjct: 184 GGSSINKWNSYMALSNSASSSWEIDIDKAIVVNDLETNVSSLVDYIDRDTYEITRKIMD- 242 Query: 9162 KSSVIPIRKVVLAGDDVCYITDARIALECAYI--------FLRELEKHS------VMGEK 9025 IPI G + ++ + ++ F + EKHS V G++ Sbjct: 243 ----IPIEHTDGCGMMLPSLSQKSFMVRLPWVKGLLVPFDFRKFAEKHSSFIVKDVYGKE 298 Query: 9024 ---ITACAGIAIVKEKYPFFKTYELSEEL--------CKNAKSSIEEGKIESRIDWHIVQ 8878 I I K ++ +K Y+ ++ C AK + E+ +E ++ + ++Q Sbjct: 299 WDIIKDDIQIIFTKSQFKMWKYYDSWDDYRYKFKKYGCLGAKLNEEDPSVEGKLTYQMLQ 358 Query: 8877 GEYNNNLDEIRNTVYKTLD-------GKDLSMRPLVVSKESDSPNHYS----LFRKDIEV 8731 + +E++ KT+ K+ M+ L ++++ ++ + + Sbjct: 359 TLTDITDEELKQISSKTVSEITQLGTDKETMMKVLGATEKNKHKTSLQEALLIYPELLND 418 Query: 8730 IRSRKLPRGKIKGMLKEMKKGE 8665 ++++ + K K M+K+ K G+ Sbjct: 419 DHTKEIIKNKKKSMIKDAKSGK 440 >ref|NP_700399.1|hypothetical protein Length = 335 Score = 35.8 bits (81), Expect = 0.091 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 10/122 (8%) Frame = -2 Query: 6921 INPDRIKKLASEGVGLRREDGYGQIAVLGKIQDDMVVSRYRKNDIVEKSDIELTDEDKRV 6742 IN I+K + GV + GQ L K++ +Y ++ SD++ + DK++ Sbjct: 80 INAAIIEKERTIGVLVDGNFSAGQKKALAKLE-----KQYENIKVIYNSDLDYSMYDKKL 134 Query: 6741 VNMILCNIFKTRSKL----------QIEKMVIELLKDVNRPQESLQSQIGKLLNIFQNGF 6592 ++ L NI K ++ +I+K + E+LK N P+ESL S K L + F Sbjct: 135 SDIYLENIAKIEAQPANVRDEYLLGEIKKSLNEVLK--NNPEESLVSSHDKRLGHVRFDF 192 Query: 6591 YQ 6586 Y+ Sbjct: 193 YR 194 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,343,085 Number of Sequences: 14420 Number of extensions: 977071 Number of successful extensions: 2924 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 2352 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2921 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 4946942238 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig185 (11,791 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164705.1|orf70 71 3e-12 ref|NP_835534.1|hypothetical protein 67 4e-11 ref|YP_024504.1|putative exonuclease 67 4e-11 ref|NP_945242.1|hypothetical protein 57 3e-08 ref|NP_852486.1|Exonuclease SbcC 55 2e-07 ref|NP_817330.1|minor tail protein 52 1e-06 ref|NP_795416.1|putative tail fiber protein 51 3e-06 ref|NP_150175.1|putative minor tail protein 50 7e-06 ref|NP_046584.1|putative transglycosylase 49 9e-06 ref|NP_058480.1|orf 41 49 1e-05 ref|YP_195153.1|recombination protein gp46 49 1e-05 ref|YP_164391.1|13 45 1e-04 ref|NP_463477.1|putative tape-measure protein 45 2e-04 ref|NP_438154.1|tail protein 43 7e-04 ref|NP_795590.1|putative minor tail protein 43 7e-04 ref|NP_861753.1|gp46 recombination endonuclease subunit 40 0.006 ref|YP_024488.1|putative glycerophosphoryl diester phosphodieste... 39 0.009 ref|NP_061549.1|Orf53 39 0.009 ref|NP_612842.1|putative tape-measure protein 39 0.016 ref|YP_164427.1|tail tape measure protein 39 0.016 ref|NP_958593.1|putative putative minor tail protein 38 0.021 ref|NP_835703.1|hypothetical protein 37 0.036 ref|YP_077227.1|Hypothetical protein 37 0.047 ref|NP_945306.1|hypothetical protein 37 0.047 ref|NP_061643.1|phi PVL ORF 20 and 21 homologue 37 0.061 ref|NP_058458.1|orf 20 37 0.061 ref|YP_024473.1|hypothetical protein 36 0.080 ref|YP_003907.1|putative tail tape measure protein 36 0.080 ref|NP_438145.1|hypothetical protein 35 0.14 ref|NP_795581.1|hypothetical protein 35 0.14 ref|NP_835566.1|hypothetical protein 35 0.14 ref|NP_064643.1|P46 35 0.14 ref|YP_006601.1|Gp21 35 0.18 ref|NP_700379.1|Major capsid protein precursor 35 0.23 ref|NP_958550.1|putative protein 35 0.23 ref|NP_958617.1|77ORF002 35 0.23 ref|NP_803398.1|structural protein 34 0.30 ref|NP_958615.1|77ORF001 34 0.30 ref|NP_795685.1|hypothetical protein 34 0.40 ref|NP_795475.1|hypothetical protein 34 0.40 ref|NP_835564.1|hypothetical protein 34 0.40 ref|YP_024544.1|hypothetical protein 34 0.40 ref|NP_058481.1|orf 42 34 0.40 ref|NP_835687.1|hypothetical protein 34 0.40 ref|NP_695166.1|minor capsid protein 34 0.40 >ref|YP_164705.1|orf70 Length = 638 Score = 70.9 bits (172), Expect = 3e-12 Identities = 109/508 (21%), Positives = 218/508 (42%), Gaps = 30/508 (5%) Frame = +1 Query: 1408 LHLKRLEIQGFKSFADRIQLEFNSGITAVVGPNGSGKSNISDAIRWVLGEQSAKTLRGGK 1587 + L+ ++I+ F+S + G+T + G NG GKS+I AI + L ++ K G+ Sbjct: 1 MKLETIKIRNFRSIRSLDFKIDSRGLTLISGKNGQGKSSIYAAILYALFNKTQK----GQ 56 Query: 1588 MEDVIFAGTEHRKPMGFAEVSLTFDNSDGVLPIDFSEVTVTR-RVYRSGESEYM-----I 1749 D I + V L ++N+ GV V R R ++ ++ + + Sbjct: 57 TADAIINDVAKKN----TSVILNYENA-GV------RYRVCRYRKHKENHNKVLFYVNEV 105 Query: 1750 NKTPCRLKDIYELFLDTGIGKD-----GYSIIGQGRVDEILSSKSEDRRAIFEEASGIMK 1914 KT K EL ++ +G ++G V S + R+ I E+ + I Sbjct: 106 EKTSSSNKLTDEL-IEASVGMSFDTMLNSFVLGDSLVTNFSVSTDKQRKEIIEDITNISI 164 Query: 1915 YKVRKQEAEKKLEMTRQNLLRINDIIAELENQLEPLREQSEVAKRYLGLRETLKVLEVNV 2094 YK A K + ++ L + + LE ++E L++Q E+ K +E + +N Sbjct: 165 YKKASSVASDKYKEAKEVLDSVERTKSNLEIKVESLKKQLELEKS----QEKQRKENIN- 219 Query: 2095 YIENIARYKEKIKELEENYASVKDNIDSENKRLEEITSLNQTNLSILKDMEGRLEAAKQE 2274 Y +N Y+ +KE EE S + + + ++I SL T L+ LK+ + LE+ K+ Sbjct: 220 YAKN--SYEASLKEYEELDKSFEKSKQETSDVPDKIASLKVT-LNSLKEEQYNLESPKET 276 Query: 2275 ---YYAIDGNLEKSNSEIRLNQEKINNLFSNIERLDGEIAEI----------------DE 2397 ++ ++K N+ + E+ +++ + + EI +E Sbjct: 277 NSIQRKLNAEMQKKNTAV----ERAKRSKADLNKFGSQYKEIKNAKQATCLYCGSPLNEE 332 Query: 2398 KIKTILEEEASKNSKIVYLQERYNEYSAKLEEAEKKLQAIIATLNENERHIENLKTEIME 2577 KT L A + K + + + + A KL++ + +NE + L+ + +E Sbjct: 333 HKKTELARLADEGRKCLDVINTEKQVYKEANAAYSKLESELDRINE---YNSQLQPKTIE 389 Query: 2578 MLDIQSDKKTQINNIKNHIEGIKKRQANIDKEVYQLTLEKDKECMKKEELSESIYKTNEL 2757 + + + ++IN+++ I+ ++N++ T+ K +++ E SE T Sbjct: 390 LNNKINQTMSEINSLEKSIDATNMVKSNVESSA--RTVNTYKANLERLE-SEPSIDTEGT 446 Query: 2758 IKNIKDLLQELTEKRKDLGIKLEEEKKK 2841 +K+ L+E T K+ K +E+ +K Sbjct: 447 LKS----LEEATSSLKEYQSKFDEDTRK 470 Score = 43.5 bits (101), Expect = 5e-04 Identities = 63/292 (21%), Positives = 115/292 (39%), Gaps = 12/292 (4%) Frame = +1 Query: 2098 IENIARYKEKIKELEENYASVKDNIDSENKRLEEITSLNQTNLSILKDMEGRLEAAKQEY 2277 I NI+ YK+ + Y K+ +DS + ++NL I ++E+ K++ Sbjct: 159 ITNISIYKKASSVASDKYKEAKEVLDSVER--------TKSNLEI------KVESLKKQ- 203 Query: 2278 YAIDGNLEKSNSEIRLNQEKINNLFSNIERLDGEIAEIDEKIKTILEEEASKNSKIVYL- 2454 LE S+ + +E IN ++ E E E+D+ + +E + KI L Sbjct: 204 ------LELEKSQEKQRKENINYAKNSYEASLKEYEELDKSFEKSKQETSDVPDKIASLK 257 Query: 2455 -------QERYNEYSAKLEEAEKKLQAIIATLNENERHIENLKTEIMEMLDIQSDKKTQI 2613 +E+YN S K E + + A + + +E K ++ S K +I Sbjct: 258 VTLNSLKEEQYNLESPK--ETNSIQRKLNAEMQKKNTAVERAKRSKADLNKFGSQYK-EI 314 Query: 2614 NNIKNHIE---GIKKRQANIDKEVYQLTLEKDKECMKKEELSESIYK-TNELIKNIKDLL 2781 N K G + + E+ +L ++ ++C+ + +YK N ++ L Sbjct: 315 KNAKQATCLYCGSPLNEEHKKTELARLA-DEGRKCLDVINTEKQVYKEANAAYSKLESEL 373 Query: 2782 QELTEKRKDLGIKLEEEKKKQNNVRSQIQIMTSRQKMLIDMERNLEGYNRTV 2937 + E L K E K N S+I + ++ N+E RTV Sbjct: 374 DRINEYNSQLQPKTIELNNKINQTMSEINSLEKSIDATNMVKSNVESSARTV 425 >ref|NP_835534.1|hypothetical protein Length = 647 Score = 67.0 bits (162), Expect = 4e-11 Identities = 119/574 (20%), Positives = 235/574 (40%), Gaps = 72/574 (12%) Frame = +1 Query: 1408 LHLKRLEIQGFKSFADRIQLEFNSGITAVVGPNGSGKSNISDAIRWVLGEQ----SAKTL 1575 + + +L I F + + F+ + G N +GK+ + A++W+L ++ S K+ Sbjct: 1 MKINKLTISNFAGIKEE-KFNFDGKDAKIYGNNATGKTTTATALQWLLFDKGLDGSTKSF 59 Query: 1576 RGGKMEDVIFAGTEHRKPMGFAEV----SLTFDNSDGVLPIDFSEVTVTRRVYRSGESEY 1743 + + E P FAE +T + ++ T + RS + Sbjct: 60 NPVPLNEKNEENYE-LIPTVFAEFEIDGKITTFKKESHPKYTINQKTNRKEYSRSRTKKQ 118 Query: 1744 MINKTPCRLKDIYELFLDTGIGKDGYSIIGQGRVDEILSSKSEDRRAIFEEASGIMKYKV 1923 IN ++KD Y+ +D I +D + +I + +L K R +FE A I V Sbjct: 119 YINDESIKVKD-YKARIDELIDEDVFKLITNPQAFNLLDWKKR-RSLLFEIAKPINDEDV 176 Query: 1924 RK--------------QEAEKKLEMTRQNLLRINDIIAELENQLEPLREQSEVAKRYLGL 2061 K E E K ++ + +IN I ++ ++ ++ + + Sbjct: 177 IKTNDDFKELNNILGDHEIETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVPEFDND 236 Query: 2062 RETLKVLEV------NVYIEN----------IARYKEKIKELEENYASVKDN-------- 2169 R T+ E+ + I+N +A + ++K +E N ++ +N Sbjct: 237 RHTIIKQEIEQLENERIDIQNGAEEINLRNQLADKQSELKRIEANNSASNENKIHALTNE 296 Query: 2170 IDSENKRLEEITSLNQTNLSILKDMEGRLEAAKQEYYAIDGNLEKSNSEIRLNQEKINNL 2349 + EN + + + + N + E R + + + +LEK+ + +K L Sbjct: 297 LHVENGTVANLKTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKN------QKFEYL 350 Query: 2350 FSNI-----ERLDGE-IAEIDEKIKTILEEEASKNSKIVYLQERYNEYSA---------- 2481 N+ ++L E ++E+ E K + + A+K+ ++ +Q N + Sbjct: 351 DDNVCSCCGQQLPAEQVSEVRE--KALQKFNANKSKELETIQTSINHIISEGKKIKPIIE 408 Query: 2482 KLEEAEKKLQAIIATLNENERHIENL--KTEIMEMLDIQSDK----KTQINNIKNHIEGI 2643 KLE+ LQ I E I+N K +I + Q+D+ +IN I I Sbjct: 409 KLEDDNNNLQIKINEAEERSARIQNKINKLKITHVDVTQTDEYKAVMLEINEINQKRSNI 468 Query: 2644 KK----RQANIDKEVYQLTLEKDKECMKKEELSESIYKTNELIKNIKDLLQELTEKRKDL 2811 +K + + ID ++ +LT EK + E+S SI K+N K++ D++ EL + L Sbjct: 469 RKTIQDKVSGIDDKISELTQEK-----SEIEVSISIEKSN---KHLDDVISELRNEEDRL 520 Query: 2812 GIKLEEEKKKQNNVRSQIQIMTSRQKMLIDMERN 2913 L+E++K +++ + T++ KML + N Sbjct: 521 ---LDEKEKYSHDLYILKEFTTTKVKMLTENINN 551 Score = 43.5 bits (101), Expect = 5e-04 Identities = 81/380 (21%), Positives = 155/380 (40%), Gaps = 41/380 (10%) Frame = +1 Query: 3556 ITDKISFEERSLKDNELVKIRDESHLAQIEENIKRSLARID-----MLKQEKEQLIRQEK 3720 +TDKI + +KD + IR + Q ++N K+ + D ++KQE EQL + Sbjct: 202 LTDKIKQINKDIKD---IPIR----INQTQQN-KQDVPEFDNDRHTIIKQEIEQLENERI 253 Query: 3721 DTCL---------ELSKYEDELSEIERDIAEKKE--VVARYQEKNKEEQSVRDAL----- 3852 D +L+ + EL IE + + E + A E + E +V + Sbjct: 254 DIQNGAEEINLRNQLADKQSELKRIEANNSASNENKIHALTNELHVENGTVANLKTRLKQ 313 Query: 3853 -HNDITDYRISVNSILESMEGVKETLERLVNEKNSLVXXXXXXXXXXXXXXXXIKALQEK 4029 IT N +LE+ +G+K LE+ N+K + + ++E Sbjct: 314 NKQQITHEENRRNQLLENHKGLKSDLEKAKNQKFEYLDDNVCSCCGQQLPAEQVSEVRE- 372 Query: 4030 NEGLDKLIKKYEEEKSGKTFXXXXXXXXXXXXXXXSAGIIDQITEINKNILLLQEEYSRI 4209 K ++K+ KS + II + +I I L+++ + + Sbjct: 373 -----KALQKFNANKSKELETIQTSINH----------IISEGKKIKPIIEKLEDDNNNL 417 Query: 4210 EVKKAKLESEMESIQNRMWDEYELTYTNALELKKDIGSMAQAQKRIAEIRNEIKELGPVN 4389 ++K + E IQN++ ++ ++T+ + + + M + + I + R+ I++ Sbjct: 418 QIKINEAEERSARIQNKI-NKLKITHVDVTQTDEYKAVMLEINE-INQKRSNIRKTIQDK 475 Query: 4390 VAAIDEYIK--TKERFEFMSAQKSDMEQAEKKLQKVINEM-----------------MTI 4512 V+ ID+ I T+E+ E +E++ K L VI+E+ + I Sbjct: 476 VSGIDDKISELTQEKSEI--EVSISIEKSNKHLDDVISELRNEEDRLLDEKEKYSHDLYI 533 Query: 4513 MKRQFMEKFKLINENFNLVF 4572 +K K K++ EN N F Sbjct: 534 LKEFTTTKVKMLTENINNEF 553 >ref|YP_024504.1|putative exonuclease Length = 639 Score = 67.0 bits (162), Expect = 4e-11 Identities = 111/502 (22%), Positives = 208/502 (41%), Gaps = 34/502 (6%) Frame = +1 Query: 1417 KRLEIQGFKSFADRIQLEFNSGITAVVGPN---------GSGKSNISDAIRWVLGEQSAK 1569 K++E+ F + + N G+ + G N GSGKS + AI + L K Sbjct: 5 KQVEVNNFLAIKEATLELDNRGLILIEGENKSNESFHSNGSGKSTLISAITYAL---YGK 61 Query: 1570 TLRGGKMEDVIFAGTEHRKPMGFAEVSLTFD-NSDGVLPIDFSEVTVTRRVYRSGESEYM 1746 T +G K +DV+ E + V L FD D L + + + + +E Sbjct: 62 TEKGLKADDVV-NNIEKKN----TSVKLKFDIGEDSYLIERYRKDKENKNKVKLFVNEKE 116 Query: 1747 I-----NKTPCRLKDIYELFLDTGIGKDGYSIIGQGRVDEILSSKSEDRRAIFEEASGIM 1911 I + T +++D++ + +T + Y GQG + + + ++ I E + Sbjct: 117 ITGSTNDVTDKQIQDLFGIEFNTYVNAIMY---GQGDIPMFSQATDKGKKEILESITKTD 173 Query: 1912 KYKVRKQEAEKKLEMTRQNLLRINDIIAELENQLEPLRE--QSEVAKRYLGLRETLKVLE 2085 YK + A++K++ + I I +L QL E Q E+ ++Y +E L Sbjct: 174 VYKQAQDVAKEKVKEVEEQQNNIRQEIYKLGYQLSTKDEYFQREI-EQYNQYKEQL---- 228 Query: 2086 VNVYIENIARYKEKIKELEENY---------ASVKDNIDSENKRLEEITSLNQTNLSILK 2238 V IEN + K++++E EE + + + E K EE +Q+ L Sbjct: 229 --VQIENSNKEKDRLREQEEKQIEAQIEQLASQIPTIPEDEFKHSEEYNKASQS----LD 282 Query: 2239 DMEGRLEAAKQEYYAIDGNLEKSNSEIRLNQEKINNLFSNIE-RLDGEIAEIDEKIK--- 2406 + +L Q Y + + SEI +N L +N + G + K+K Sbjct: 283 LLSNKLTELNQVYSEYNTKEQVLKSEIATLSNSLNQLDTNDHCPVCGSPIDNSHKLKEQE 342 Query: 2407 TILEEEASKNSKIVYLQERYNEYSAKLEEAEKKLQAIIATLNENERHIENLKTEIMEMLD 2586 I + +K +I + E + Y +++ + K Q I +++ ++ +I ++ Sbjct: 343 NINNQIENKKQEITSVLEMKDTYKEAIDKVKDKSQEIKDKMSQEDQQEREHNNKINSIIQ 402 Query: 2587 IQSDKKTQINNIKNHIEGIK-KRQANIDKEVYQLTLEKDKECMKKEELSESIYKTNELIK 2763 S K+ I++++N+ +K K Q + + + K+K K+EL ESI K E I Sbjct: 403 EASRIKSDISSLENNKTYLKVKYQHQSVQGLEREEPSKEKHEEDKKELQESIDKHEENIV 462 Query: 2764 NI---KDLLQELTEKRKDLGIK 2820 + K Q+ + + GI+ Sbjct: 463 QLETKKGKYQQAVDAFSNKGIR 484 Score = 49.7 bits (117), Expect = 7e-06 Identities = 72/296 (24%), Positives = 129/296 (43%), Gaps = 10/296 (3%) Frame = +1 Query: 2056 GLRETLK-VLEVNVYIENIARYKEKIKELEENYASVKDNIDSENKRLEEITSLNQTNLSI 2232 G +E L+ + + +VY + KEK+KE+EE +++ I +L Q + Sbjct: 161 GKKEILESITKTDVYKQAQDVAKEKVKEVEEQQNNIRQEIYKLGYQLSTKDEYFQREIEQ 220 Query: 2233 LKDMEGRLEAAKQEYYAIDGNLEKSNSEI-RLNQEKINNLFSNIERLDGEIAEIDEKIKT 2409 + +L +E SN E RL +++ + + IE+L +I I E Sbjct: 221 YNQYKEQLV-----------QIENSNKEKDRLREQEEKQIEAQIEQLASQIPTIPEDEFK 269 Query: 2410 ILEE--EASKN-----SKIVYLQERYNEYSAKLEEAEKKLQAIIATLNENERHIE-NLKT 2565 EE +AS++ +K+ L + Y+EY+ K E+ L++ IATL+ + ++ N Sbjct: 270 HSEEYNKASQSLDLLSNKLTELNQVYSEYNTK----EQVLKSEIATLSNSLNQLDTNDHC 325 Query: 2566 EIMEMLDIQSDKKTQINNIKNHIEGIKKRQANIDKEVYQLTLEKDKECMKKEELSESIYK 2745 + S K + NI N IE K+ E+ + KD YK Sbjct: 326 PVCGSPIDNSHKLKEQENINNQIENKKQ-------EITSVLEMKDT------------YK 366 Query: 2746 TNELIKNIKDLLQELTEKRKDLGIKLEEEKKKQNNVRSQIQIMTSRQKMLIDMERN 2913 E I +KD QE+ +K + + ++E++ N + S IQ + + + +E N Sbjct: 367 --EAIDKVKDKSQEIKDK---MSQEDQQEREHNNKINSIIQEASRIKSDISSLENN 417 Score = 46.6 bits (109), Expect = 6e-05 Identities = 128/634 (20%), Positives = 254/634 (40%), Gaps = 26/634 (4%) Frame = +1 Query: 2131 KELE-ENYASVKD-NIDSENKRLEEITSLNQTNLSILKDMEGRLEAAKQEYYAIDGNLEK 2304 K++E N+ ++K+ ++ +N+ L I N++N S + G+ YA+ G EK Sbjct: 5 KQVEVNNFLAIKEATLELDNRGLILIEGENKSNESFHSNGSGKSTLISAITYALYGKTEK 64 Query: 2305 SNSEIRLNQEKINNLFSNIERLDGEIAEIDEKIKTILEEEASKNSKIVYLQERYNEYSAK 2484 K +++ +NIE+ + + K+K + E++ YL ERY K Sbjct: 65 GL--------KADDVVNNIEKKNTSV-----KLKFDIGEDS-------YLIERYR----K 100 Query: 2485 LEEAEKKLQAIIATLNENERHIENLKTEIMEMLDIQSDKKTQINNIKNHIEGIKKRQANI 2664 +E + K++ + NE+ I ++ + IQ + N ++ I Q +I Sbjct: 101 DKENKNKVKLFV-----NEKEITGSTNDVTDK-QIQDLFGIEFNT---YVNAIMYGQGDI 151 Query: 2665 DKEVYQLTLEKDKECMKKEELSESIYKTNELIKNIKDLLQELTEKRKDLGIKLEEEKKKQ 2844 ++ +K K+ E+ ESI KT ++ K +D+ +E K++E +++Q Sbjct: 152 P--MFSQATDKGKK-----EILESITKT-DVYKQAQDVAKE----------KVKEVEEQQ 193 Query: 2845 NNVRSQI-----QIMTSRQKMLIDMERNLEGYNRTVRVILQACRESHEFGKGIHGALAQL 3009 NN+R +I Q+ T + +R +E YN+ ++Q + E + Sbjct: 194 NNIRQEIYKLGYQLSTKDEY----FQREIEQYNQYKEQLVQIENSNKEKDR--------- 240 Query: 3010 FTVDKRYETAIEMALGGALQNIVTTSEEDAKRVIEYLKKN---NLGRATFLPISSVKGKY 3180 + ++ E IE + I T E++ K EY K + +L ++ V +Y Sbjct: 241 --LREQEEKQIEAQIEQLASQIPTIPEDEFKHSEEYNKASQSLDLLSNKLTELNQVYSEY 298 Query: 3181 -------------LDDSILNQL--KDHEGFVGVASDLIEYDEQYRGIILSLLGKVVVVES 3315 L +S LNQL DH G D ++ I + K + S Sbjct: 299 NTKEQVLKSEIATLSNS-LNQLDTNDHCPVCGSPIDNSHKLKEQENINNQIENKKQEITS 357 Query: 3316 LDAGIRMARKFGYGFRIVSLDXXXXXXXXXXXXXXKEKRESGILSRNREISELGESIARL 3495 + + K Y I + +++RE N +I+ + + +R+ Sbjct: 358 V-----LEMKDTYKEAIDKVKDKSQEIKDKMSQEDQQERE-----HNNKINSIIQEASRI 407 Query: 3496 KEDDEAIEKNVEGLIRELEEITDKISFEERSLKDNELVKIRDESHLAQIEENIKRSLARI 3675 K D ++E N L K+ ++ +S++ E + E H Sbjct: 408 KSDISSLENNKTYL---------KVKYQHQSVQGLEREEPSKEKH--------------- 443 Query: 3676 DMLKQEKEQLIRQEKDTCLELSKYEDELSEIERDIAEKKEVVARYQEKNKEEQSVRDALH 3855 +++K++L QE + K+E+ + ++E + ++ V + K +R + Sbjct: 444 ---EEDKKEL--QE-----SIDKHEENIVQLETKKGKYQQAVDAFSNK-----GIRSVVL 488 Query: 3856 NDITDY-RISVNSILESMEGVKETLERLVNEKNS 3954 + IT + N L+++ G +E KN+ Sbjct: 489 DFITPFLNEKANEYLQTLSGSDIEIEFQTQVKNA 522 Score = 41.6 bits (96), Expect = 0.002 Identities = 59/311 (18%), Positives = 136/311 (43%), Gaps = 26/311 (8%) Frame = +1 Query: 1849 EILSSKSEDRRAIFEEASGIMKYKVRKQEAEKKLEMTRQNL--LRIND---IIAELENQL 2013 ++LS+K + ++ E Y ++Q + ++ +L L ND + + Sbjct: 282 DLLSNKLTELNQVYSE------YNTKEQVLKSEIATLSNSLNQLDTNDHCPVCGSPIDNS 335 Query: 2014 EPLREQSEVAKRYLGLRETLKVLEVNVYIENIARYKEKIKELEENYASVKDNIDSENKRL 2193 L+EQ + + ++ E+ +E YKE I ++++ +KD + E+++ Sbjct: 336 HKLKEQENINNQIENKKQ-----EITSVLEMKDTYKEAIDKVKDKSQEIKDKMSQEDQQE 390 Query: 2194 EE----ITSLNQ------TNLSILKDMEGRLEAAKQEYYAIDGNLEKSNSEIRLNQEKIN 2343 E I S+ Q +++S L++ + L+ K ++ ++ G LE+ ++E Sbjct: 391 REHNNKINSIIQEASRIKSDISSLENNKTYLK-VKYQHQSVQG-LEREEPSKEKHEEDKK 448 Query: 2344 NLFSNIERLDGEIAEIDE---KIKTILEEEASKNSKIV-------YLQERYNEYSAKLEE 2493 L +I++ + I +++ K + ++ ++K + V +L E+ NEY L Sbjct: 449 ELQESIDKHEENIVQLETKKGKYQQAVDAFSNKGIRSVVLDFITPFLNEKANEYLQTLSG 508 Query: 2494 AEKKLQAIIATLNENERHIENLKTEIMEMLDIQSDKKTQINNIKNHIEGIKKR-QANIDK 2670 ++ ++ E + ++N K E+ + D+ + K++ G +KR I Sbjct: 509 SDIEI--------EFQTQVKNAKGELKDKFDVIVKNSKGGGSYKSNSAGEQKRIDLAISF 560 Query: 2671 EVYQLTLEKDK 2703 + L + KD+ Sbjct: 561 AIQDLIMSKDE 571 >ref|NP_945242.1|hypothetical protein Length = 513 Score = 57.4 bits (137), Expect = 3e-08 Identities = 88/446 (19%), Positives = 182/446 (40%), Gaps = 41/446 (9%) Frame = +1 Query: 1717 VYRSGESEYMINKTPCRLKDIYELFLDTGIGKDGYSIIGQGRVDEILSSKSEDRRAIF-- 1890 +Y+ + +I+K YE+ LD+ + D IL+ + + I Sbjct: 36 IYKRSKKYNLISKEKFNELSQYEVILDS-----------KKEADSILTKANNEAEIILKL 84 Query: 1891 --EEASGIMKYKVRKQEAEKKLEMTRQNLLRINDIIAELENQLEPLREQSEVAKRYLGLR 2064 E+A I+ +A K++++ +N+ + +DI+ E +NQ E + E ++ + Sbjct: 85 AKEKADDIIS------QANKEIDLF-ENIDKADDILIEAQNQAEEILENAKQEAEEIKEN 137 Query: 2065 ETLKVLEVNVYIENIARYKEKIKELEENYASV---KDNIDSENKRLEEITSLNQTN---- 2223 + + ++ ++R EK+K+ E++Y ++ K NI + + T +N Sbjct: 138 ALQEKYSLKASLKELSRKVEKLKQEEKDYEAILKEKSNIVIAQETTVDFTDNITSNELKN 197 Query: 2224 -LSILK-------------------DMEGRLEAAKQEYYAIDGNLEKSNSEIRLN----- 2328 LSIL+ D + R + +K+ A + + + +R+N Sbjct: 198 TLSILQIKEKELIADGKACRSTSYDDYKKREKQSKKLLRAFNAETDYYLTNVRMNNVDTY 257 Query: 2329 QEKINNLFSNIERLDGEIAEIDEKIKTILEEEASKNSKIVYLQERYNEYSAKLEEAEKKL 2508 + KI N FS + RL I + + N K+ L Y Y LE+ + L Sbjct: 258 RNKITNTFSTLNRL--------FSIDNVQVTKELLNIKLEKLDATYKYYYV-LEQERELL 308 Query: 2509 QAIIATLNENERHIENLKTEIMEMLDIQSDKKTQINNIKNHIEGIKKRQANIDKEVYQLT 2688 +A L E +R + L+T+ +++ ++ + ++ + ++E +I+KE+Y Sbjct: 309 KAKKEELREQQRVEKELQTQKDKIIKEENQFRKEVAKLMKYLE---SSNTDIEKELYA-- 363 Query: 2689 LEKDKECMKKEELSESIYKTNELIKNIKDLLQELTEKRKDLGIKLEEEKKKQNNVRSQIQ 2868 + IK ++D ++EL + +KD+ E ++ N + Sbjct: 364 ---------------------DKIKELEDKIKELEKDKKDV------ENRETNTRAGFVY 396 Query: 2869 IMTS-----RQKMLIDMERNLEGYNR 2931 I+++ I M R LE +R Sbjct: 397 IISNIGSFGENVYKIGMTRRLEPMDR 422 >ref|NP_852486.1|Exonuclease SbcC Length = 518 Score = 55.1 bits (131), Expect = 2e-07 Identities = 103/536 (19%), Positives = 220/536 (41%), Gaps = 68/536 (12%) Frame = +1 Query: 1411 HLKRLEIQGFKSFADRIQLEFNSGITAVVGPNGSGKSNISDAIRWV----------LGEQ 1560 ++ + ++GF+S + +G+ + GP+ SGK++I A+RW+ + E Sbjct: 4 NINEIFVEGFQSHTNS-HFNLGNGLNVITGPSDSGKTSIIRAVRWIAFNEPQGEAFVNES 62 Query: 1561 SAKTLRGGKMEDVIFAG-------TEHRKPMGFAEVSLTFDNSD---------GVLPIDF 1692 +++ I T +R +V F+ S+ G+ F Sbjct: 63 VGYATVAIHLDNGIIISKHRRKGKTSYRIQTDPGDVGSVFEKSEVPEEVKQLLGITKQTF 122 Query: 1693 SEVTVTRRVYRSGESEYMINKTPCRLKDIYELFLDT--------GIGKDGYSIIGQGRVD 1848 + E+ ++I++TP + T + KD Y+ R + Sbjct: 123 GDFVTALNFAFQLEAPFLISETPSSGAKVLGKLAGTEAVDLAVKSVSKDTYA----ARQE 178 Query: 1849 EILSSKSEDRRAIFEEASGIMKY-----KVRKQEAEKKLEMTRQNLLRINDIIAELENQL 2013 +L+ K +R A +++Y KV++ + + L + L + D++ +L+ Q Sbjct: 179 RLLAEKEIERL-----AGNLLEYLDVDDKVQQLKTAESLMEHVEELHKKKDVLQQLQTQQ 233 Query: 2014 EPLREQSEVAKRYLGLRETLKVLEVNVYIENIARYKEKIKELEENYASVKDNIDSENKRL 2193 + E+ VA E ++ +V V I + ++E E++ ++ +D + KR Sbjct: 234 QIAFEKFRVA-----FVEDERLSKVPVLI-------QILEETEKDQQCLQTLLDLQ-KRY 280 Query: 2194 EEITSLNQTNLSILKDMEGRLEAA--------KQEYYA----IDGNLEKSNSEIRLNQEK 2337 E +++ +T LK +G +E + +E Y+ + N +K + ++ Q + Sbjct: 281 ESLSTAKKTLTDTLKQFDGLVEVSNLLQDSTTSEERYSLLSILSQNCKKYSQVLQEAQLQ 340 Query: 2338 INNLF----SNIERLDGEIAEIDEKIK-----TILEEEASKNSKIVYLQERYNEYSAKLE 2490 + L N+ ++ E+ + DE K +++++ K SK V S +L+ Sbjct: 341 VERLTVIENINVAVIEEEVKKTDELKKLYVQHSVVKQGYEKTSKDVERLSVPGNASDQLQ 400 Query: 2491 EAEKKLQAI--IATLNENERHIENLK---TEIMEMLDIQSDKKTQINNIKN---HIEGIK 2646 E E + + ++ L + ++I+N T +E L++ + QI N +N H+ +K Sbjct: 401 ECETSITQLSQMSALLQKYQNIQNYYMSWTSRVERLNVPREVVIQIVNAENNVTHLAELK 460 Query: 2647 KRQANIDKEVYQLTLEKDKECMKKEELSESIYKTNELIKNIKDLLQELTEKRKDLG 2814 + N Y + ++ + EL E K+I++ +EL E + G Sbjct: 461 ELLRN-----YMIWHQRVRHSTSTLELYE---------KHIENYTKELEETWNEAG 502 >ref|NP_817330.1|minor tail protein Length = 481 Score = 52.0 bits (123), Expect = 1e-06 Identities = 76/295 (25%), Positives = 132/295 (44%), Gaps = 24/295 (8%) Frame = +1 Query: 2080 LEVNVYIENIARYKEKIKELEENYASVKDNIDS-------ENKRLEE-ITSLNQTNLSIL 2235 + +N E I+ + EKIK+ + S K+ IDS N+ LE+ T LN+ S+L Sbjct: 69 IAINNNKEKISTFLEKIKKFQPMIDSNKNEIDSLKEKDVILNESLEQHQTQLNEFEKSML 128 Query: 2236 KDMEGRLEAAKQEYYAIDGNLEKSNSEIRLNQEKINNLFSNIERLDGEIAEID-----EK 2400 + + + E KQ A ++ ++ +I N K N NIE L E+AE+ +K Sbjct: 129 Q-YDDKYETLKQSLNATKDSVGRNTDDI--NLIKSNTGVENIEALKRELAEVKKSVNLDK 185 Query: 2401 IKTILEEEASKNSK------IVYLQE-----RYNEYSAKLEEAEKKLQAIIATLNENERH 2547 I+ I ++ S N+K I +Q+ + N + KLE E+ + I N N Sbjct: 186 IREIEQQIESLNAKPTNEKTIQEMQQDINQLKQNTSAGKLEALEQSINDI--KTNANLDK 243 Query: 2548 IENLKTEIMEMLDIQSDKKTQINNIKNHIEGIKKRQANIDKEVYQLTLEKDKECMKKEEL 2727 I L+++I + D I++IK+ I +K I K +E D + +K+ + Sbjct: 244 IRELESKINSI--NPKDYTEDIDSIKSDITTLKSNNDKITK------IESDIKELKERPV 295 Query: 2728 SESIYKTNELIKNIKDLLQELTEKRKDLGIKLEEEKKKQNNVRSQIQIMTSRQKM 2892 +S +L K D + EL +K + K +N+ +I S+ ++ Sbjct: 296 VDSNGHV-DLSKYDND-ITELKQKTSTNESSISGLSTKVDNLNIDTKIAQSKSEI 348 Score = 37.0 bits (84), Expect = 0.047 Identities = 35/202 (17%), Positives = 90/202 (44%), Gaps = 16/202 (7%) Frame = +1 Query: 2359 IERLDGEIAEIDEKIKTILEEEASKNSKIVYLQERYNEYSAKLEEAEKKLQAIIATLNEN 2538 IERL + E ++ I T + Y YN+ +++ +++ +N N Sbjct: 15 IERLADFLTEENDLISTSDGHIYVRTDTGYYKLTFYNDLKTLIDKYSGQIENHDIAINNN 74 Query: 2539 ERHIENLKTEIMEMLDIQSDKKTQINNIKNH----IEGIKKRQANIDK------------ 2670 + I +I + + K +I+++K E +++ Q +++ Sbjct: 75 KEKISTFLEKIKKFQPMIDSNKNEIDSLKEKDVILNESLEQHQTQLNEFEKSMLQYDDKY 134 Query: 2671 EVYQLTLEKDKECMKKEELSESIYKTNELIKNIKDLLQELTEKRKDLGIKLEEEKKKQNN 2850 E + +L K+ + + ++ K+N ++NI+ L +EL E +K + L++ ++ + Sbjct: 135 ETLKQSLNATKDSVGRNTDDINLIKSNTGVENIEALKRELAEVKK--SVNLDKIREIEQQ 192 Query: 2851 VRSQIQIMTSRQKMLIDMERNL 2916 + S + + +K + +M++++ Sbjct: 193 IES-LNAKPTNEKTIQEMQQDI 213 Score = 35.0 bits (79), Expect = 0.18 Identities = 33/174 (18%), Positives = 75/174 (43%), Gaps = 11/174 (6%) Frame = +1 Query: 1921 VRKQEAEKKLEMTRQNLLRIN-----DIIAELENQLEPLREQSEVAKRYLGLRETLKVLE 2085 ++ + +E ++ L + D I E+E Q+E L + K +++ + L+ Sbjct: 158 IKSNTGVENIEALKRELAEVKKSVNLDKIREIEQQIESLNAKPTNEKTIQEMQQDINQLK 217 Query: 2086 VNVYIENIARYKEKIKELEENYASVKDNIDSENKRLEEITSLNQTNLSILKDMEGRLEAA 2265 N + ++ I +++ N N+D + +I S+N KD +++ Sbjct: 218 QNTSAGKLEALEQSINDIKTN-----ANLDKIRELESKINSINP------KDYTEDIDSI 266 Query: 2266 KQEYYAIDGN---LEKSNSEIRLNQEK---INNLFSNIERLDGEIAEIDEKIKT 2409 K + + N + K S+I+ +E+ +N ++ + D +I E+ +K T Sbjct: 267 KSDITTLKSNNDKITKIESDIKELKERPVVDSNGHVDLSKYDNDITELKQKTST 320 >ref|NP_795416.1|putative tail fiber protein Length = 683 Score = 50.8 bits (120), Expect = 3e-06 Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 8/222 (3%) Frame = +1 Query: 2182 NKRLEEITSLNQTNLSILKDMEGRLEAAKQEYYAIDGNLEKSNSEIRLNQEKINNLFSNI 2361 N+ LE IT L T L+D+E R+E K+E ++ N K N E ++K+ Sbjct: 393 NESLETITGLGMTFQEFLQDIEKRIETGKKE---MEDNWRKVNLEFDNFKKKVELEGLQF 449 Query: 2362 ERLDGEIAEIDEKIKTILEEEASKNSKIVYLQERYNEYSAKLEEAEKKLQAIIATLNENE 2541 + L +I E+DE+ L EE K K + L E E K+ +A K + + + Sbjct: 450 KTLKEQIKEVDERTDKEL-EEFRKTLKNLALPE---EAIKKITDAIK-----VEDIPSIK 500 Query: 2542 RHIENLKTEIMEMLD--------IQSDKKTQINNIKNHIEGIKKRQANIDKEVYQLTLEK 2697 + ++LK ++ E + + ++ KT+ N KN + G R D++ ++ Sbjct: 501 QSFDDLKNKVSETSETSRLNAEILGNNGKTRYN--KNLLVGDPNRTKTYDEDYIEVE-AN 557 Query: 2698 DKECMKKEELSESIYKTNELIKNIKDLLQELTEKRKDLGIKL 2823 D + E + S +T EL+K + L ++ K G+KL Sbjct: 558 DGGFKRGETYTISFSQTCELLKKVAITLTQINNK----GVKL 595 >ref|NP_150175.1|putative minor tail protein Length = 1093 Score = 49.7 bits (117), Expect = 7e-06 Identities = 61/308 (19%), Positives = 134/308 (43%), Gaps = 20/308 (6%) Frame = +1 Query: 2020 LREQSEVAKRYLGLRETLKVLEVNVYIENIARYKEKIKELEENYASVKDNIDSENKRLEE 2199 L +SE KR +E L V + +++ K+ KE ++N SVK N +S K +E Sbjct: 453 LTAESEETKRLKSEQEEL-VKSTDQLTDSV---KQSAKERQKNLESVKGNTESYQKLADE 508 Query: 2200 ITSLNQ-TNLSIL--KDMEGRLEAAKQEYYAIDGNLEKSNSEIRLNQEKINNLFSNIER- 2367 I L+Q TN + K+++ +++A ++ +K+ + N ++I S +E Sbjct: 509 IVQLSQKTNKTAADKKNLKKKIDALNASVSGLNLVYDKNTDSLSHNNDQIKARISAMEAE 568 Query: 2368 ------------LDGEIAEIDEKIKTILEEEASKNSKIVYLQERYNEYSAKLEEAEKKLQ 2511 ++ + AEI E++K I E+ ++++NE S + K+ Sbjct: 569 STWETSQKNLLDIEQKRAEIGEQLKQIAEQ-----------RKKWNEESNVSDSVRKER- 616 Query: 2512 AIIATLNENERHIENLKTEIMEMLDIQSDKKTQINNIKNHIEGIKKRQANIDKEVYQLTL 2691 + LN+ E ++N +TE L + +K +Q+ + + + + + Sbjct: 617 --LQELNDKETELKNTQTE----LQTEYEKTSQVQQAASEAMAAAAENGSNRQVISYEGM 670 Query: 2692 EKDKECMKKEELSESIYKTNELIKNIKDLLQELTEKR----KDLGIKLEEEKKKQNNVRS 2859 K +++ + + K NEL++ ++ ++ K ++ L++ ++ NN + Sbjct: 671 SK----AQQKAVDDMRSKYNELLETTTNMFDQIQMKSAISVDEMIANLQKNQEAVNNWAT 726 Query: 2860 QIQIMTSR 2883 + + R Sbjct: 727 NLNTLAER 734 Score = 36.2 bits (82), Expect = 0.080 Identities = 48/231 (20%), Positives = 93/231 (40%), Gaps = 22/231 (9%) Frame = +1 Query: 1909 MKYKVRKQEAEKKLEMTRQNLLRINDIIAELENQLEPLREQSEVAKRYLGLRETLKVLEV 2088 +K ++ EAE E +++NLL I AE+ QL+ + EQ + + ++++ + Sbjct: 558 IKARISAMEAESTWETSQKNLLDIEQKRAEIGEQLKQIAEQRKKWNEESNVSDSVRKERL 617 Query: 2089 NVYIENIARYKEKIKELEENY--------------ASVKDNIDSENKRLEEITSLNQTNL 2226 + K EL+ Y A+ +N N+++ +++ Sbjct: 618 QELNDKETELKNTQTELQTEYEKTSQVQQAASEAMAAAAEN--GSNRQVISYEGMSKAQQ 675 Query: 2227 SILKDMEGR----LEAAKQEYYAIDG----NLEKSNSEIRLNQEKINNLFSNIERLDGEI 2382 + DM + LE + I ++++ + ++ NQE +NN +N+ L Sbjct: 676 KAVDDMRSKYNELLETTTNMFDQIQMKSAISVDEMIANLQKNQEAVNNWATNLNTLAER- 734 Query: 2383 AEIDEKIKTILEEEASKNSKIVYLQERYNEYSAKLEEAEKKLQAIIATLNE 2535 ++E I L+ + +Y+QE N KL ATLNE Sbjct: 735 -GVNEGILAKLQAMGPQGG--LYVQELVNASDEKL-----------ATLNE 771 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 49.3 bits (116), Expect = 9e-06 Identities = 69/335 (20%), Positives = 157/335 (46%), Gaps = 26/335 (7%) Frame = +1 Query: 1924 RKQEAEKKLEMTRQNLLRINDIIAELENQLEPLREQSEVAKRYLGLRETLKVLEVNVYIE 2103 ++ + +++L+ + +L+ + D + EL+ QL QS+V ETLK +E + Sbjct: 1802 QRAQLQEELKQAKLDLISVQDQVRELQKQLV----QSKVD-------ETLKSIE-----K 1845 Query: 2104 NIARYKEKIKELEENYASVKDNIDSE---NKRLEEITSLNQTNLSILKDMEGRLEAAK-- 2268 + ++ + KIK+++ + +++ D +K+++ I + +K +E + +AAK Sbjct: 1846 SSSKTQGKIKDVDNKISMTEEDEDKVKYYSKQIKLIQQQQKEAKKYIKQLEEQKKAAKGF 1905 Query: 2269 --------QEYYAIDGNLEKSNSEIRLNQEKINNLFSNI-ERLDGEIAEIDEKIKTILEE 2421 +E + N E+ ++ I +++ ++ + + E+ EK++ I E Sbjct: 1906 PDIQEQITEEMQNWKDKQKDFNLELYNTKKSIKDIYKSLADEVVSIYKEMYEKMRDIELE 1965 Query: 2422 EASKNSKIVYLQERYNEYSAKLEEAEKKLQAIIATLNE--NERHIENL---KTEIMEMLD 2586 K ++ + + + AK ++ K+ Q I L + N+ +++ K+++ E+ + Sbjct: 1966 AHQKATQDLIDEIDKTDDEAKFQKELKERQDSIQKLTDQINQYSLDDSEFGKSKVKELTE 2025 Query: 2587 IQSDKKTQINNIKNHIEGIKKRQANIDKEVYQLTLEKDKECM--KKEEL---SESIYKTN 2751 ++ +++ +K R++N KE Q LEKD+E + K + L + K Sbjct: 2026 QLQKEQLDLDDF------LKDRESNKRKEALQDQLEKDEESINNKYDNLVNDERAFKKLE 2079 Query: 2752 ELIKN--IKDLLQELTEKRKDLGIKLEEEKKKQNN 2850 + I N I D+ ++L E K + +E K +N Sbjct: 2080 DKIMNGKITDIAKQLNEFSKFINTNMESIGKSISN 2114 Score = 42.4 bits (98), Expect = 0.001 Identities = 32/139 (23%), Positives = 68/139 (48%), Gaps = 3/139 (2%) Frame = +1 Query: 3460 EISELGESIARLKEDDEAIEKNVEGLIRELEEITDKISFEERSLKDNELVKIRDESHLAQ 3639 ++ E +SI + + K+V+ I EE DK+ + + +K + + + ++ Q Sbjct: 1835 KVDETLKSIEKSSSKTQGKIKDVDNKISMTEEDEDKVKYYSKQIKLIQQQQKEAKKYIKQ 1894 Query: 3640 IEENIKRSLARIDMLKQEKEQLIR---QEKDTCLELSKYEDELSEIERDIAEKKEVVARY 3810 +EE K + D+ +Q E++ ++KD LEL + + +I + +A+ EVV+ Y Sbjct: 1895 LEEQKKAAKGFPDIQEQITEEMQNWKDKQKDFNLELYNTKKSIKDIYKSLAD--EVVSIY 1952 Query: 3811 QEKNKEEQSVRDALHNDIT 3867 +E ++ + + H T Sbjct: 1953 KEMYEKMRDIELEAHQKAT 1971 Score = 38.1 bits (87), Expect = 0.021 Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 2/198 (1%) Frame = +1 Query: 1918 KVRKQEAEKKLEMTRQNLLRINDIIAELENQLEPLREQSEVAKRYLGLRET-LKVLEVNV 2094 K+ K E ++ + LRI+ L+ LR++ R L + E L LEV Sbjct: 1196 KLMKTEVNNAIKTLNADTLRIDS--------LKKLRKE-----RKLDMSEAELSDLEVKS 1242 Query: 2095 YIENIARYKEKIKELEENYASVKDNIDSENKRLEEITSLNQTNLSILKDMEGRLEAAKQE 2274 I N+A K+++K+LEE +S+ + ++ + S ++ +S ++ E KQ Sbjct: 1243 -INNVADAKKELKKLEEKMLQPGGYSNSQIEAMQSVKSALESYISASEEATSTQEMNKQA 1301 Query: 2275 YYAIDGNLEK-SNSEIRLNQEKINNLFSNIERLDGEIAEIDEKIKTILEEEASKNSKIVY 2451 +LE ++ + + N+E +++ + +K K LE+ ++ K Sbjct: 1302 LVEAGTSLENWTDQQEKANEETKTSMY------------VVDKYKEALEKVNAEIDKYNK 1349 Query: 2452 LQERYNEYSAKLEEAEKK 2505 Y +YS K +A KK Sbjct: 1350 QVNDYPKYSQKYRDAIKK 1367 >ref|NP_058480.1|orf 41 Length = 332 Score = 48.9 bits (115), Expect = 1e-05 Identities = 78/365 (21%), Positives = 150/365 (41%), Gaps = 18/365 (4%) Frame = +1 Query: 1408 LHLKRLEIQGFKSFADRIQLEFNSGITAVVGPNGSGKSNISDAIRWVLGEQ----SAKTL 1575 + + +L I F + FN + G N +GK+ + A++W+L ++ S K+ Sbjct: 5 MKINKLTISNFAGIKEE-SFNFNGKDAKIYGNNATGKTTTATALQWLLFDKGLDGSTKSF 63 Query: 1576 RGGKMEDVIFAGTEHRKPMGFAEV----SLTFDNSDGVLPIDFSEVTVTRRVYRSGESEY 1743 + + E P FAE +T + ++ T + RS + Sbjct: 64 NPVSLNEKNEENYE-LIPTVFAEFEIDGKITTFKKESHPKYTINQKTNRKEYSRSRTKKQ 122 Query: 1744 MINKTPCRLKDIYELFLDTGIGKDGYSIIGQGRVDEILSSKSEDRRAIFEEASGIMKYKV 1923 IN ++KD Y+ +D I +D + +I + +L K R +FE A I Sbjct: 123 YINDESIKVKD-YKARIDELIDEDVFKLITNPQAFNLLDWKKR-RSLLFEIAKPI----- 175 Query: 1924 RKQEAEKKLEMTRQNLLRINDIIAELENQLEPLREQSEVAKRYLGLRETLKVLEVNVYIE 2103 +++++ ND EL N L + E K+ L T K+ ++N I+ Sbjct: 176 -----------NDEDVIKTNDDFKELNNILGD--HEIETKKKIL----TDKIKQINKDIK 218 Query: 2104 NI-------ARYKEKIKELE-ENYASVKDNIDS-ENKRLEEITSLNQTNL-SILKDMEGR 2253 +I + K+ + E + + YA +K I+ EN+R++ + NL + L D + Sbjct: 219 DIPIRINQTQQNKQDVPEFDNDRYAIIKQEIEQLENERIDIQNGKEEINLRNQLADKQSE 278 Query: 2254 LEAAKQEYYAIDGNLEKSNSEIRLNQEKINNLFSNIERLDGEIAEIDEKIKTILEEEASK 2433 L+ +E +NS N+ KI+ L + + +G A + ++K ++ K Sbjct: 279 LK-----------RIEDNNS--ASNENKIHALTNELHVENGTAANLKTRLKQNKQQIRMK 325 Query: 2434 NSKIV 2448 ++ Sbjct: 326 KIDVI 330 >ref|YP_195153.1|recombination protein gp46 Length = 576 Score = 48.9 bits (115), Expect = 1e-05 Identities = 101/473 (21%), Positives = 192/473 (40%), Gaps = 15/473 (3%) Frame = +1 Query: 1492 VVGPNGSGKSNISDAIRWVLGEQSAKTLRGGKMEDVIFAGTEHRKPMGFAEVSLTFDNSD 1671 +VG NG+GKS I DA+ + L + + + KPM + + + D Sbjct: 32 IVGDNGAGKSTILDALTFSLFGKPFRKIN---------------KPM----LVNSINEKD 72 Query: 1672 GVLPIDFS----EVTVTRRVYRSGESEYMINKT---PCRLKDIYELFLDTGIGKDGYS-- 1824 + I+FS E V R + S Y K L D + F + + K Y Sbjct: 73 CITEIEFSIGKNEFKVIRGIKPSIFEIYCNEKLWNQESTLVDQQKNF-EQNVLKMNYKSF 131 Query: 1825 ----IIGQGRVDEILSSKSEDRRAIFEEASGIMKYKVRKQEAEKKLEMTRQNLLRINDII 1992 ++G + RR I E+ I + V + K+ R+N N+ I Sbjct: 132 TQIVVLGSSTFVPFMRLPVAQRREIIEDILDIQVFSVMNILLKDKI---REN----NEEI 184 Query: 1993 AELENQLEPLREQSEVAKRYLGLRETLKVLEVNVYIE-NIARYKEKIKELEENYASVKDN 2169 ++ QL+ L+E+ ++ K YL LE++ + +I + EKI EL Sbjct: 185 KGIDYQLDLLKEKIDLQKNYL--------LEIDKKQKADIDKKNEKITELL--------- 227 Query: 2170 IDSENKRLEEITSLNQTNLSILKDMEGRLEAAKQEYYAIDGNLEKSNSEIRLNQEKINNL 2349 N+ L +N+TN+ I + L ++Y + L+K N+ + K+ Sbjct: 228 ----NEELNHHNLINETNVKIEE-----LNEEIKKYSSSSDKLKKLNTFLIKLSSKMQTC 278 Query: 2350 FSNIERLDGEIAEIDEKIKTILEEEASKNSKIVYLQERYNEYSAKLEEAEKKLQAIIATL 2529 + + E E ++ T ++ + + + +++ + +KL+E ++ + Sbjct: 279 -----QKEHEFFEKNQVCPTCTQDLSDQ-----FREDKISSGKSKLDEMTLGYNDLMEAI 328 Query: 2530 NENERHIENLKTEIMEMLDIQSDKKTQINNIKNHIEGIKKRQANIDKEVYQLTLEKDKEC 2709 E E+ EI + ++K +Q N I+ I+K +++KE+ +L + Sbjct: 329 GEEEKRFCKWD-EISSSITENNNKISQCNYA---IKSIRKSIDDVEKEIKELESGGGDK- 383 Query: 2710 MKKEELSESIYKTNELIKNIKDLLQELTEKRKDLG-IKLEEEKKKQNNVRSQI 2865 E+ K L+ N KDL +L+E +KD + + K N ++++I Sbjct: 384 ------KEAYTKLETLVANKKDLSFQLSESKKDKDMLSVASGLLKDNGIKTRI 430 >ref|YP_164391.1|13 Length = 434 Score = 45.4 bits (106), Expect = 1e-04 Identities = 77/378 (20%), Positives = 161/378 (42%), Gaps = 12/378 (3%) Frame = +1 Query: 1408 LHLKRLEIQGFKSF-ADRIQLEFNSGITAVVGPNGSGKSNISDAIRWVLGEQSAKTLRGG 1584 + + +LEI+ K A +I+ N G+T + G NG GK++ DAI W LG Sbjct: 2 IKINKLEIENIKRVKAVKIEPSPN-GLTVIGGGNGQGKTSTLDAIAWALG---------- 50 Query: 1585 KMEDVIFAGTEHRKPMGFAEVS-----LTFDNSDGVLPIDFSEVTVTRRVYRSGE--SEY 1743 G ++R M E S L S+G++ + + + + +GE + Sbjct: 51 --------GNKYRPSMAEREGSTIPPYLNVTLSNGLVVERKGKNSDLKVIDPNGEKGGQQ 102 Query: 1744 MINKTPCRLKDIYELFLDTGIGKDGYSIIGQGRVDEILSSKSEDRRAIFEEASGIMKYKV 1923 ++N + EL +D + + ++S S+++ I G+ Sbjct: 103 LLNSF------VEELAID---------------LPKFMNSTSKEKANILLRIIGVGDKLF 141 Query: 1924 RKQEAEKKLEMTRQNLLRINDIIAELENQLEPLREQ---SEVAKRYLGLRETLKVLEVNV 2094 ++ EK++ R+ + +I D +++ +EQ + K + + +N Sbjct: 142 ELEKNEKEIYNQRRTIGQIAD------QKMKFAKEQPYYPDAPKEPISASDL-----INQ 190 Query: 2095 YIENIARYKEKIKELEENYASVKDNIDSENKRLEEITSLNQTNLSILKDMEGRLEAAKQE 2274 E +AR E ++ + A ++ ++ + +E + +L+ A+Q Sbjct: 191 QQEILARNGENQRK-RQQLAQIQHQYTAKGQEVERLRQ--------------QLQEAEQA 235 Query: 2275 YYAIDGNLEKSNSE-IRLNQEKINNLFSNIERLDGEIAEIDEKIKTILEEEASKNSKIVY 2451 Y A+ +LE + + + L E L +NI+++D EI+ K++ L+++ ++ Y Sbjct: 236 YAALGEDLEIAQKDTLDLVDESTEELQANIQQID----EINRKVRANLDKDKAETDANDY 291 Query: 2452 LQERYNEYSAKLEEAEKK 2505 + +Y + S ++EE KK Sbjct: 292 -RAQYEKLSKQIEEVRKK 308 >ref|NP_463477.1|putative tape-measure protein Length = 1794 Score = 45.1 bits (105), Expect = 2e-04 Identities = 74/355 (20%), Positives = 146/355 (41%), Gaps = 14/355 (3%) Frame = +1 Query: 2281 AIDGNLEKSN-SEIRLNQEK-INNLFSNIERLDGEIAEIDEKIKTILEEEASKNSKIVYL 2454 AID L N S +L Q K +N++ I + +A +K ++ + + N+K+ L Sbjct: 1444 AIDAGLHSKNKSRGQLKQAKALNSIEGYIAQQTNRLAATAKKRDKVVAQLKAANTKMADL 1503 Query: 2455 QERYNEYSAKLEEAEKKLQAIIATLNENERHIENLKTEIMEMLDIQSDKKTQINNIKNHI 2634 ++ EY+A + E K+Q+ + N + + ++++ E+ + L +I + ++ Sbjct: 1504 TKQSKEYAASITE---KMQSYGSISNVDAENPQSIQQEMQKRL-------KEIKAFQANV 1553 Query: 2635 EGIKKRQANIDKEVYQLTLEKDKE--CMKKEELSESIYKTNELIKNIKDLLQELTEKRKD 2808 E ++K+ + K++ LE E + L++S KT IK I ++ K Sbjct: 1554 EKLRKK--GVSKDIISDILESGVENGSSYAQALAKSDAKT---IKAINSTQNQINSASKS 1608 Query: 2809 LGIKLEEEKKKQ--NNVRSQIQIMTSRQKMLIDMERNLEGYNRTVRVILQACRESHEFGK 2982 +G N + I + S++K L +T + I S + Sbjct: 1609 MGNTAANAMYSAGINAAKGLINGLNSQKKQL----------EKTAKSIASTITNSVKKAL 1658 Query: 2983 GIHGALAQLFTVDKRYETAIEMALGGALQNIVTTSEEDAKRVIEYLKKNNLGRATFLPIS 3162 IH + K + + + + V ++ + +V+ + T +S Sbjct: 1659 KIHSPSRVAIELGKFFTGGLGNGVLAGAKGAVQSTNKMVDKVVNAASNMTVPTITLPKVS 1718 Query: 3163 SVKGKYLDDSILNQ------LKDHEGFVGVASDLIEYDEQYRG--IILSLLGKVV 3303 + K L S LN+ + ++E SDLI E+ G IIL++ GKV+ Sbjct: 1719 AEKALGLKSSDLNRTITVKAIVENESKNNSNSDLINAIEKSGGRPIILNVDGKVI 1773 >ref|NP_438154.1|tail protein Length = 1086 Score = 43.1 bits (100), Expect = 7e-04 Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 19/242 (7%) Frame = +1 Query: 1918 KVRKQEAEKKLEMTRQNLLRINDIIAELENQLEPLREQSEVAKRYLGLRETLKVL-EVNV 2094 K K+E E +E +Q + + + E + LE ++E + ++ E +K+ + N Sbjct: 462 KKLKKEQEGLVESNKQLRDSVREGVQERKKGLESVKESTAAHQKLAD--EIIKLAAKENK 519 Query: 2095 YIENIARYKEKIKELEENYASVKDNIDSENKRLEEITSLNQTNLSILKDMEGRLEAAKQE 2274 K KI EL + + D + L ++ +S + + E + A+Q Sbjct: 520 TAGEKRNLKNKIDELNGSIDGLNLAYDKNSNSLSHNADQIKSRISAM-EAESTWQTAQQN 578 Query: 2275 YYAIDGNLEK------SNSEIRLNQEKINNLFSNIERLDGEIAEIDEKIKTILEEEASKN 2436 I+ + N+E+R + N+ ++ + EKI + EEEA Sbjct: 579 LLNIEQKRSEVSKKLAENAELRKKWNEEANVSDSVRK---------EKIAELTEEEAKLK 629 Query: 2437 SKIVYLQERYNEYSAKLEEAEKKLQA---------IIATLNENERH---IENLKTEIMEM 2580 + LQE YN+ SA + A + A +IA N +E I+N++T+ E+ Sbjct: 630 NMQTQLQEEYNKTSATQQAAADAMAAAEESGSARQVIAYENMSEAQRTAIDNMRTKYSEL 689 Query: 2581 LD 2586 L+ Sbjct: 690 LE 691 Score = 37.7 bits (86), Expect = 0.027 Identities = 37/171 (21%), Positives = 83/171 (48%), Gaps = 8/171 (4%) Frame = +1 Query: 2380 IAEIDEKIKTILEEEASKNSKIVYLQERYNEYSAKLEEAEKKLQAIIATLNENERHIENL 2559 + E +++++ + E + K + E E +A ++ ++ + A N+ NL Sbjct: 471 LVESNKQLRDSVREGVQERKKGL---ESVKESTAAHQKLADEIIKLAAKENKTAGEKRNL 527 Query: 2560 KTEIMEM------LDIQSDKKTQINNIKNHIEGIKKRQANIDKEVYQLTLEKDKECM--K 2715 K +I E+ L++ DK + N++ ++ + IK R + ++ E T +++ + K Sbjct: 528 KNKIDELNGSIDGLNLAYDKNS--NSLSHNADQIKSRISAMEAESTWQTAQQNLLNIEQK 585 Query: 2716 KEELSESIYKTNELIKNIKDLLQELTEKRKDLGIKLEEEKKKQNNVRSQIQ 2868 + E+S+ + + EL K + RK+ +L EE+ K N+++Q+Q Sbjct: 586 RSEVSKKLAENAELRKKWNEEANVSDSVRKEKIAELTEEEAKLKNMQTQLQ 636 Score = 35.8 bits (81), Expect = 0.10 Identities = 37/178 (20%), Positives = 80/178 (44%), Gaps = 16/178 (8%) Frame = +1 Query: 3424 EKRESGILSRNRE--------ISELGESIARLKEDDEAIEKNVEGLIRELEEITDKISFE 3579 +K + G++ N++ + E + + +KE A +K + +I+ L +K + E Sbjct: 465 KKEQEGLVESNKQLRDSVREGVQERKKGLESVKESTAAHQKLADEIIK-LAAKENKTAGE 523 Query: 3580 ERSLKD--NELVKIRDESHLA------QIEENIKRSLARIDMLKQEKEQLIRQEKDTCLE 3735 +R+LK+ +EL D +LA + N + +RI ++ E Q+ Sbjct: 524 KRNLKNKIDELNGSIDGLNLAYDKNSNSLSHNADQIKSRISAMEAESTWQTAQQN----- 578 Query: 3736 LSKYEDELSEIERDIAEKKEVVARYQEKNKEEQSVRDALHNDITDYRISVNSILESME 3909 L E + SE+ + +AE E+ ++ E+ SVR ++T+ + ++ ++ Sbjct: 579 LLNIEQKRSEVSKKLAENAELRKKWNEEANVSDSVRKEKIAELTEEEAKLKNMQTQLQ 636 >ref|NP_795590.1|putative minor tail protein Length = 1086 Score = 43.1 bits (100), Expect = 7e-04 Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 19/242 (7%) Frame = +1 Query: 1918 KVRKQEAEKKLEMTRQNLLRINDIIAELENQLEPLREQSEVAKRYLGLRETLKVL-EVNV 2094 K K+E E +E +Q + + + E + LE ++E + ++ E +K+ + N Sbjct: 462 KKLKKEQEGLVESNKQLRDSVREGVQERKKGLESVKESTAAHQKLAD--EIIKLAAKENK 519 Query: 2095 YIENIARYKEKIKELEENYASVKDNIDSENKRLEEITSLNQTNLSILKDMEGRLEAAKQE 2274 K KI EL + + D + L ++ +S + + E + A+Q Sbjct: 520 TAGEKRNLKNKIDELNGSIDGLNLAYDKNSNSLSHNADQIKSRISAM-EAESTWQTAQQN 578 Query: 2275 YYAIDGNLEK------SNSEIRLNQEKINNLFSNIERLDGEIAEIDEKIKTILEEEASKN 2436 I+ + N+E+R + N+ ++ + EKI + EEEA Sbjct: 579 LLNIEQKRSEVSKKLAENAELRKKWNEEANVSDSVRK---------EKIAELTEEEAKLK 629 Query: 2437 SKIVYLQERYNEYSAKLEEAEKKLQA---------IIATLNENERH---IENLKTEIMEM 2580 + LQE YN+ SA + A + A +IA N +E I+N++T+ E+ Sbjct: 630 NMQTQLQEEYNKTSATQQAAADAMAAAEESGSARQVIAYENMSEAQRTAIDNMRTKYSEL 689 Query: 2581 LD 2586 L+ Sbjct: 690 LE 691 Score = 37.7 bits (86), Expect = 0.027 Identities = 37/171 (21%), Positives = 83/171 (48%), Gaps = 8/171 (4%) Frame = +1 Query: 2380 IAEIDEKIKTILEEEASKNSKIVYLQERYNEYSAKLEEAEKKLQAIIATLNENERHIENL 2559 + E +++++ + E + K + E E +A ++ ++ + A N+ NL Sbjct: 471 LVESNKQLRDSVREGVQERKKGL---ESVKESTAAHQKLADEIIKLAAKENKTAGEKRNL 527 Query: 2560 KTEIMEM------LDIQSDKKTQINNIKNHIEGIKKRQANIDKEVYQLTLEKDKECM--K 2715 K +I E+ L++ DK + N++ ++ + IK R + ++ E T +++ + K Sbjct: 528 KNKIDELNGSIDGLNLAYDKNS--NSLSHNADQIKSRISAMEAESTWQTAQQNLLNIEQK 585 Query: 2716 KEELSESIYKTNELIKNIKDLLQELTEKRKDLGIKLEEEKKKQNNVRSQIQ 2868 + E+S+ + + EL K + RK+ +L EE+ K N+++Q+Q Sbjct: 586 RSEVSKKLAENAELRKKWNEEANVSDSVRKEKIAELTEEEAKLKNMQTQLQ 636 Score = 35.8 bits (81), Expect = 0.10 Identities = 37/178 (20%), Positives = 80/178 (44%), Gaps = 16/178 (8%) Frame = +1 Query: 3424 EKRESGILSRNRE--------ISELGESIARLKEDDEAIEKNVEGLIRELEEITDKISFE 3579 +K + G++ N++ + E + + +KE A +K + +I+ L +K + E Sbjct: 465 KKEQEGLVESNKQLRDSVREGVQERKKGLESVKESTAAHQKLADEIIK-LAAKENKTAGE 523 Query: 3580 ERSLKD--NELVKIRDESHLA------QIEENIKRSLARIDMLKQEKEQLIRQEKDTCLE 3735 +R+LK+ +EL D +LA + N + +RI ++ E Q+ Sbjct: 524 KRNLKNKIDELNGSIDGLNLAYDKNSNSLSHNADQIKSRISAMEAESTWQTAQQN----- 578 Query: 3736 LSKYEDELSEIERDIAEKKEVVARYQEKNKEEQSVRDALHNDITDYRISVNSILESME 3909 L E + SE+ + +AE E+ ++ E+ SVR ++T+ + ++ ++ Sbjct: 579 LLNIEQKRSEVSKKLAENAELRKKWNEEANVSDSVRKEKIAELTEEEAKLKNMQTQLQ 636 >ref|NP_861753.1|gp46 recombination endonuclease subunit Length = 562 Score = 40.0 bits (92), Expect = 0.006 Identities = 104/511 (20%), Positives = 199/511 (38%), Gaps = 35/511 (6%) Frame = +1 Query: 1486 TAVVGPNGSGKSNISDAIRWVLGEQSAKTLRGGKMEDVIFAGTEHRKPMGFAEVSLTFDN 1665 T + G NG GKS + +AI + L + + ++ G++ + ++K + E+ + FD Sbjct: 32 TLITGKNGGGKSTMLEAITFGLFGKPFRDVKKGQI-----INSTNKKEL-LVELWMEFD- 84 Query: 1666 SDGVLPIDFSEVTVTRRVYRSGESEYMINKTPCRLKDIYELFLDTGIGKDGYSIIGQGRV 1845 + +Y I + + +I+E+ +D G+ R+ Sbjct: 85 ----------------------DKKYFIKRG--QKPNIFEISVD-GV-----------RL 108 Query: 1846 DEILSSKSEDRRAIFEEASGIMKYKVRKQ-----------------EAEKKLEMTRQNLL 1974 DE S+ S D + FE + G M Y KQ A +KL ++LL Sbjct: 109 DE--SASSRDFQEEFERSIG-MSYASFKQIVVLGTAGYTPFMALSTPARRKLV---EDLL 162 Query: 1975 RINDIIAELE----NQLEPLREQSEV--AKRYLGLRETLKVLEVNVYIE------NIARY 2118 + + AE++ +Q+ L Q +V AK+ G+ + +K+ N+ + N+AR Sbjct: 163 EVGTL-AEMDKINKSQVRELNSQGQVLDAKKD-GVIQQIKIYNENIERQKKLSGDNVARL 220 Query: 2119 KEKIKELEENYASVKDNIDSENKRLEEITSLNQTNLSILKDMEGRLEAAKQEYYAIDGNL 2298 + +L + S+K I+ N+RL N+ + +D QE + I + Sbjct: 221 QNMYDDLAKEARSLKAEIEEANERL--------LNIVLDEDPTEAFNKIGQEAFLIKSKI 272 Query: 2299 EKSNSEIRLNQE--KINNLFSNIERLDGEIAEIDEKIKTILEEEASKNSKIVYLQERYNE 2472 + N I++ + S + + D +++I + Sbjct: 273 DSYNKVIKMYHDGGTCPTCASQLHQGDPIVSKITD------------------------- 307 Query: 2473 YSAKLEEAEKKLQAIIATLNENERHIENLKTEIMEMLDIQSDKKTQINNIKNHIEGIKKR 2652 KL E + + + ++ + + D+ SD +T+ + I+ KK Sbjct: 308 ---KLHECNHSFEQLTCHRDNLSVLVDEYRANVKTKQDLASDIRTKKQAMIATIDKAKKV 364 Query: 2653 QANIDKEVYQLTLEKDKECMKKEELSESIYKTNELIKNIKDLLQELTEKRKDLGIKLEEE 2832 +A I++ + D+ + ++EL + I KT I K +T+ KD GIK Sbjct: 365 KAAIEQASAEFIDHADEIALLQKEL-DKIIKTKSDIVLEKYHRGIITDMLKDSGIKGAII 423 Query: 2833 KKK----QNNVRSQIQIMTSRQKMLIDMERN 2913 KK + ++IM + ID E N Sbjct: 424 KKYVPLFNKQINHYLKIMEADYVFSIDEEFN 454 >ref|YP_024488.1|putative glycerophosphoryl diester phosphodiesterase Length = 848 Score = 39.3 bits (90), Expect = 0.009 Identities = 74/363 (20%), Positives = 142/363 (39%), Gaps = 9/363 (2%) Frame = +1 Query: 1609 GTEHRKPMGFAEVSLTFDNSDGVLPIDFSEVTVTRRVYRSGES-----EYMINKTPCRLK 1773 GT R G + S+T + DF T + ++ S E I K P L Sbjct: 155 GTSIRTYNGKSFFSMTSGEEEKPQATDFYTGTEYQDLFTSYYGNKTLIEPRIQKAPNMLF 214 Query: 1774 DIYELFLDTGIGKDGYSIIGQGRVDEILSS--KSEDRRAIFEEASGIMKYKVRKQEAEKK 1947 +F D G + + + +I +S +E ++ +E S Y+V KQ+ + Sbjct: 215 KHQGVFYDDGTPDNHITTLFISERGDIRASVLNTETQKRTTQEMSSDGSYRVIKQDDDLM 274 Query: 1948 LEMTRQNLLRINDIIAELENQLEPLREQSEVAKRYL-GLRETLKVLEVNVYIENIARYKE 2124 L+ E Q+ SE K Y+ + + + +YI++ K Sbjct: 275 LD----------------EAQVWIEYGISEDNKFYIKNDKHKFEFTDEGIYIDD----KP 314 Query: 2125 KIKELEENYASVKDNIDSENKRLEEITSLNQTNLSILKDMEGRLEAAKQEYYAIDGNLEK 2304 ++ L+E+ A N++ K L++I L + + KD NLE+ Sbjct: 315 MLENLDESIAEAMKNLNEIQKELDDINYLLK---GVGKD-----------------NLEE 354 Query: 2305 SNSEIRLNQEKINNLFSNIERLDGEIAEIDEKIKTILEEEASKNSKIVYLQERYNEYSAK 2484 + + E S++ RL +IAE+ + + I+ + + E +