Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig72 Genome size: 507577 Host's GC content: 63.78 Predicted Codon Position GC: 1st: 66.12 2nd: 43.92 3rd: 75.61 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig71 Genome size: 349669 Host's GC content: 63.38 Predicted Codon Position GC: 1st: 65.88 2nd: 43.81 3rd: 74.93 >PredictedProphage1 Length: 6028 Number of hits = 5 GC Coding First Second Third 55.91 58.81 60.43 44.72 71.27 Left Right Strand Best Blast Hit Score Evalue 3595 3777 1 ref|NP_059606.1|C2 46.6bits(109) 0.001 6550 6687 1 ref|NP_944247.1|hypothetical protein 39.3bits(90) 0.23 8603 8770 -1 ref|NP_720278.1|Int 46.6bits(109) 0.001 8787 9029 -1 ref|NP_852723.1|putative integrase 42.7bits(99) 0.020 9248 9622 -1 ref|NP_061531.1|integrase 47.0bits(110) 0.001 >PredictedProphage2 Length: 17226 Number of hits = 5 GC Coding First Second Third 67.15 66.46 68.75 45.88 84.75 Left Right Strand Best Blast Hit Score Evalue 57690 58238 1 ref|NP_818239.1|gp188 43.1bits(100) 0.016 60271 61479 -1 ref|NP_945090.1|gp59 171bits(433) 4e-41 65891 66046 1 ref|NP_047971.2|gp26 45.8bits(107) 0.002 70066 70422 1 ref|NP_818091.1|gp15 39.7bits(91) 0.17 74787 74915 1 ref|NP_047971.2|gp26 40.0bits(92) 0.13 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig70 Genome size: 180853 Host's GC content: 65.37 Predicted Codon Position GC: 1st: 67.10 2nd: 44.35 3rd: 78.30 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig69 Genome size: 161548 Host's GC content: 62.78 Predicted Codon Position GC: 1st: 65.51 2nd: 43.65 3rd: 73.93 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig68 Genome size: 159246 Host's GC content: 63.89 Predicted Codon Position GC: 1st: 66.19 2nd: 43.95 3rd: 75.81 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig67 Genome size: 154963 Host's GC content: 65.26 Predicted Codon Position GC: 1st: 67.03 2nd: 44.32 3rd: 78.12 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig66 Genome size: 146678 Host's GC content: 63.28 Predicted Codon Position GC: 1st: 65.81 2nd: 43.78 3rd: 74.76 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig65 Genome size: 134735 Host's GC content: 64.68 Predicted Codon Position GC: 1st: 66.68 2nd: 44.16 3rd: 77.14 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig63 Genome size: 123672 Host's GC content: 63.75 Predicted Codon Position GC: 1st: 66.11 2nd: 43.91 3rd: 75.57 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig61 Genome size: 120422 Host's GC content: 65.63 Predicted Codon Position GC: 1st: 67.26 2nd: 44.42 3rd: 78.74 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig64 Genome size: 112665 Host's GC content: 63.91 Predicted Codon Position GC: 1st: 66.21 2nd: 43.96 3rd: 75.84 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig62 Genome size: 110276 Host's GC content: 63.70 Predicted Codon Position GC: 1st: 66.08 2nd: 43.90 3rd: 75.49 >PredictedProphage1 Length: 15606 Number of hits = 5 GC Coding First Second Third 64.04 65.73 73.12 44.17 79.91 Left Right Strand Best Blast Hit Score Evalue 4658 4984 1 ref|YP_024499.1|putative helicase 51.6bits(122) 2e-05 9731 10750 -1 ref|NP_899408.1|NMN adenylyl tranferase 132bits(331) 9e-30 15282 15446 1 ref|NP_861696.1|gp39.2 conserved hypothetical protein 43.9bits(102) 0.003 19661 19840 1 ref|NP_943898.1|gp44 clamp loader subunit 38.5bits(88) 0.13 19925 20263 -1 ref|YP_164321.1|hypothetical protein 38.1bits(87) 0.17 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig58 Genome size: 104303 Host's GC content: 64.63 Predicted Codon Position GC: 1st: 66.65 2nd: 44.15 3rd: 77.06 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig60 Genome size: 101776 Host's GC content: 61.43 Predicted Codon Position GC: 1st: 64.68 2nd: 43.29 3rd: 71.64 >PredictedProphage1 Length: 40676 Number of hits = 36 GC Coding First Second Third 60.10 63.55 65.32 44.11 81.23 Left Right Strand Best Blast Hit Score Evalue 1864 3027 -1 ref|NP_490644.1|integrase 444bits(1142) 1e-124 3406 3672 -1 ref|NP_944247.1|hypothetical protein 37.0bits(84) 0.36 3929 4201 -1 ref|NP_490638.1|hypothetical protein 72.8bits(177) 6e-12 4315 6906 -1 ref|NP_490637.1|hypothetical protein 727bits(1877) 0.0 7455 7691 -1 ref|NP_490634.1|hypothetical protein 53.5bits(127) 4e-06 9118 9738 1 ref|NP_938208.1|c repressor 95.1bits(235) 1e-18 11912 12595 -1 ref|YP_006537.1|Dmt 127bits(318) 3e-28 13979 14317 -1 ref|YP_006603.1|Gp23 76.3bits(186) 5e-13 15572 16537 -1 ref|NP_490627.1|hypothetical protein 288bits(738) 5e-77 16600 17001 -1 ref|NP_490626.1|hypothetical protein 170bits(431) 2e-41 17750 20080 -1 ref|NP_490625.1|hypothetical protein 425bits(1092) 1e-118 20118 20249 -1 ref|NP_958078.1|gp23.5 47.0bits(110) 3e-04 20249 20539 -1 ref|NP_490623.1|hypothetical protein 104bits(260) 1e-21 20731 21240 -1 ref|NP_490622.1|hypothetical protein 167bits(422) 2e-40 21278 22447 -1 ref|NP_490621.1|hypothetical protein 512bits(1318) 1e-144 25325 25486 -1 ref|NP_944215.1|hypothetical protein 46.2bits(108) 6e-04 26111 26764 -1 ref|NP_839867.1|gpH 177bits(449) 2e-43 26876 27406 -1 ref|NP_052266.1|Orf38; P2 I homolog; tail protein 205bits(521) 8e-52 27402 28298 -1 ref|NP_839865.1|gpJ 333bits(854) 2e-90 28310 28648 -1 ref|NP_490616.1|predicted baseplate 103bits(256) 4e-21 28921 29322 -1 ref|NP_490615.1|predicted baseplate 139bits(349) 7e-32 29393 29842 -1 ref|NP_490613.1|predicted tail completion 114bits(286) 1e-24 29853 30326 -1 ref|NP_490612.1|predicted tail completion 82.4bits(202) 7e-15 30319 30486 -1 ref|NP_490611.1|hypothetical protein 53.5bits(127) 4e-06 30452 30637 -1 ref|NP_878209.1|LysB 53.9bits(128) 3e-06 30901 31284 -1 ref|YP_006397.1|gp19 137bits(345) 2e-31 31579 31770 -1 ref|NP_046763.1|gpX 81.3bits(199) 2e-14 31788 32204 -1 ref|NP_490604.1|predicted capsid completion protein 108bits(269) 1e-22 32397 33035 -1 ref|NP_839854.1|gpM 155bits(392) 7e-37 33060 34064 -1 ref|NP_490602.1|predicted major capsid protein 447bits(1149) 1e-124 34083 34892 -1 ref|NP_490601.1|presumed capsid scaffold 210bits(534) 2e-53 35024 36772 1 ref|NP_490600.1|predicted DNA-dependent ATPase terminase subunit 687bits(1774) 0.0 36919 37863 1 ref|NP_052249.1|capsid portal protein 361bits(926) 8e-99 38022 38771 1 ref|YP_164085.1|Dam modification methylase 312bits(800) 3e-84 40720 41355 1 ref|NP_852734.1|hypothetical protein 45.8bits(107) 8e-04 42306 42539 -1 ref|YP_006569.1|HumD 49.3bits(116) 7e-05 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig57 Genome size: 96599 Host's GC content: 63.63 Predicted Codon Position GC: 1st: 66.03 2nd: 43.88 3rd: 75.36 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig59 Genome size: 95906 Host's GC content: 62.22 Predicted Codon Position GC: 1st: 65.17 2nd: 43.50 3rd: 72.98 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig56 Genome size: 85393 Host's GC content: 64.96 Predicted Codon Position GC: 1st: 66.85 2nd: 44.24 3rd: 77.62 >PredictedProphage1 Length: 3671 Number of hits = 5 GC Coding First Second Third 67.20 64.89 71.79 39.10 83.76 Left Right Strand Best Blast Hit Score Evalue 72912 73313 -1 ref|NP_996677.1|phage repressor 52.4bits(124) 7e-06 73517 73675 1 ref|NP_046798.1|Old 38.1bits(87) 0.14 74393 74599 1 ref|NP_690733.1|DNA helicase 37.7bits(86) 0.18 75815 76018 1 ref|NP_958209.1|gene 33 protein 36.6bits(83) 0.40 76151 76582 1 ref|NP_899322.1|recombination endonuclease subunit 43.5bits(101) 0.003 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig54 Genome size: 77002 Host's GC content: 65.40 Predicted Codon Position GC: 1st: 67.12 2nd: 44.36 3rd: 78.36 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig55 Genome size: 73174 Host's GC content: 63.24 Predicted Codon Position GC: 1st: 65.79 2nd: 43.77 3rd: 74.69 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig53 Genome size: 72184 Host's GC content: 64.87 Predicted Codon Position GC: 1st: 66.80 2nd: 44.22 3rd: 77.46 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig51 Genome size: 64460 Host's GC content: 64.40 Predicted Codon Position GC: 1st: 66.50 2nd: 44.09 3rd: 76.66 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig52 Genome size: 62546 Host's GC content: 62.29 Predicted Codon Position GC: 1st: 65.21 2nd: 43.52 3rd: 73.10 >PredictedProphage1 Length: 6416 Number of hits = 5 GC Coding First Second Third 65.70 65.22 68.70 46.07 80.90 Left Right Strand Best Blast Hit Score Evalue 219 713 -1 ref|NP_944889.1|unknown 66.2bits(160) 3e-10 2813 3085 -1 ref|YP_006619.1|Gp39 53.1bits(126) 3e-06 3124 3549 -1 ref|YP_006919.1|putative RNaseH ribonuclease 112bits(281) 3e-24 5612 5977 1 ref|NP_813780.1|internal virion protein D 55.8bits(133) 5e-07 6326 6634 1 ref|NP_663692.1|putative lysin 50.8bits(120) 2e-05 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig50 Genome size: 54676 Host's GC content: 63.70 Predicted Codon Position GC: 1st: 66.07 2nd: 43.90 3rd: 75.48 >PredictedProphage1 Length: 14389 Number of hits = 8 GC Coding First Second Third 62.83 63.63 66.04 44.55 80.30 Left Right Strand Best Blast Hit Score Evalue 1631 1924 1 ref|NP_038334.1|ORF33 36.2bits(82) 0.34 2396 2806 1 ref|NP_835555.1|hypothetical protein, similar to scaffolding protein 60.5bits(145) 2e-08 3265 3732 1 ref|NP_817947.1|gp96 41.6bits(96) 0.008 6955 7221 1 ref|YP_024677.1|gp04 94.0bits(232) 1e-18 9689 10519 -1 ref|NP_899368.1|conserved domain protein 55.5bits(132) 5e-07 10759 11142 -1 ref|NP_817766.1|gp5 58.9bits(141) 5e-08 11184 11831 -1 ref|NP_817764.1|gp3 159bits(403) 2e-38 15303 16019 1 ref|NP_858969.1|conserved phage protein; central region similar to Gifsy-2 37.4bits(85) 0.15 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig48 Genome size: 51597 Host's GC content: 64.21 Predicted Codon Position GC: 1st: 66.39 2nd: 44.04 3rd: 76.34 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig49 Genome size: 49929 Host's GC content: 65.50 Predicted Codon Position GC: 1st: 67.18 2nd: 44.39 3rd: 78.53 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig47 Genome size: 38699 Host's GC content: 63.74 Predicted Codon Position GC: 1st: 66.10 2nd: 43.91 3rd: 75.55 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig43 Genome size: 37851 Host's GC content: 65.76 Predicted Codon Position GC: 1st: 67.34 2nd: 44.45 3rd: 78.96 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig45 Genome size: 32979 Host's GC content: 64.20 Predicted Codon Position GC: 1st: 66.38 2nd: 44.03 3rd: 76.32 >PredictedProphage1 Length: 13896 Number of hits = 7 GC Coding First Second Third 64.46 63.49 62.77 55.16 72.53 Left Right Strand Best Blast Hit Score Evalue 7211 7369 1 ref|NP_817650.1|gp61 35.4bits(80) 0.36 9817 10062 1 ref|NP_958091.1|gp34 36.2bits(82) 0.21 13747 14238 1 ref|NP_944186.1|hypothetical protein 77.0bits(188) 1e-13 18206 18424 -1 ref|NP_958285.1|ORF7 38.1bits(87) 0.056 18615 18953 1 ref|YP_164321.1|hypothetical protein 38.9bits(89) 0.033 19236 20081 1 ref|NP_061524.1|Orf28 47.8bits(112) 7e-05 20765 21106 -1 ref|NP_542287.1|unknown 35.4bits(80) 0.36 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig46 Genome size: 32082 Host's GC content: 64.12 Predicted Codon Position GC: 1st: 66.34 2nd: 44.01 3rd: 76.20 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig42 Genome size: 31145 Host's GC content: 65.87 Predicted Codon Position GC: 1st: 67.41 2nd: 44.49 3rd: 79.16 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig44 Genome size: 27619 Host's GC content: 63.17 Predicted Codon Position GC: 1st: 65.75 2nd: 43.76 3rd: 74.59 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig41 Genome size: 26802 Host's GC content: 61.50 Predicted Codon Position GC: 1st: 64.72 2nd: 43.30 3rd: 71.75 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig37 Genome size: 26412 Host's GC content: 66.60 Predicted Codon Position GC: 1st: 67.86 2nd: 44.68 3rd: 80.38 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig39 Genome size: 26077 Host's GC content: 62.37 Predicted Codon Position GC: 1st: 65.25 2nd: 43.54 3rd: 73.22 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig38 Genome size: 24145 Host's GC content: 64.61 Predicted Codon Position GC: 1st: 66.63 2nd: 44.14 3rd: 77.01 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig40 Genome size: 23170 Host's GC content: 61.72 Predicted Codon Position GC: 1st: 64.86 2nd: 43.36 3rd: 72.13 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig36 Genome size: 21759 Host's GC content: 64.27 Predicted Codon Position GC: 1st: 66.43 2nd: 44.05 3rd: 76.45 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig35 Genome size: 18551 Host's GC content: 64.40 Predicted Codon Position GC: 1st: 66.51 2nd: 44.09 3rd: 76.67 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig33 Genome size: 12628 Host's GC content: 67.90 Predicted Codon Position GC: 1st: 68.66 2nd: 45.03 3rd: 82.59 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig30 Genome size: 7652 Host's GC content: 61.50 Predicted Codon Position GC: 1st: 64.72 2nd: 43.31 3rd: 71.76 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig32 Genome size: 7194 Host's GC content: 64.21 Predicted Codon Position GC: 1st: 66.39 2nd: 44.04 3rd: 76.34 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig34 Genome size: 6941 Host's GC content: 56.74 Predicted Codon Position GC: 1st: 61.79 2nd: 42.02 3rd: 63.70 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig29 Genome size: 6511 Host's GC content: 62.40 Predicted Codon Position GC: 1st: 65.28 2nd: 43.55 3rd: 73.28 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig28 Genome size: 3857 Host's GC content: 69.38 Predicted Codon Position GC: 1st: 69.57 2nd: 45.43 3rd: 85.09 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig25 Genome size: 2686 Host's GC content: 65.34 Predicted Codon Position GC: 1st: 67.08 2nd: 44.34 3rd: 78.25 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig27 Genome size: 2210 Host's GC content: 55.16 Predicted Codon Position GC: 1st: 60.82 2nd: 41.59 3rd: 61.03 Prophage Finder Output Genome file: temp/chromohalobacterlc.txt Sequence Header: >Contig26 Genome size: 2205 Host's GC content: 59.68 Predicted Codon Position GC: 1st: 63.60 2nd: 42.81 3rd: 68.68