BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig72 (507,577 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164695.1|transposase 151 4e-35 ref|NP_047360.1|ORF348; homologous to eryA gene product in L07626 130 1e-28 ref|NP_932589.1|hypothetical protein 114 8e-24 ref|NP_899293.1|topoisomerase II large subunit 113 2e-23 ref|NP_665964.1|putative plasmid partitioning protein Soj 103 1e-20 ref|NP_861694.1|gp60plus39 large subunit topoisomerase II 102 4e-20 ref|NP_891577.1|topoisomerase II large subunit 102 4e-20 ref|NP_943883.1|topoisomerase II large subunit 95 5e-18 ref|NP_049621.1|gp39 topoisomerase II, large subunit, N-terminal... 90 2e-16 ref|NP_932362.1|topoisomerase II large subunit 87 1e-15 ref|NP_046572.1|ABC transporter 86 2e-15 ref|YP_164394.1|DEAD box family helicase 82 6e-14 ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family 81 9e-14 ref|YP_024677.1|gp04 72 6e-11 ref|NP_046923.1|gp28 69 4e-10 ref|NP_943827.1|gp49 67 1e-09 ref|YP_006605.1|Gp25 67 1e-09 ref|NP_695158.1|minor capsid protein 67 2e-09 ref|NP_758949.1|ORF58 65 5e-09 ref|NP_892074.1|partitioning protein SpyA 65 5e-09 ref|NP_612844.1|Gp15 protein 64 9e-09 ref|NP_803812.1|ORF246 61 8e-08 ref|NP_818239.1|gp188 60 2e-07 ref|NP_705641.1|gp15 59 4e-07 ref|NP_958120.1|gp15 59 4e-07 ref|NP_046584.1|putative transglycosylase 56 2e-06 ref|NP_050160.1|hypothetical protein 56 3e-06 ref|NP_803396.1|tail length tape measure protein 55 4e-06 ref|YP_006528.1|ParA 55 7e-06 ref|NP_046877.1|putative non-heme haloperoxidase 54 9e-06 ref|NP_817650.1|gp61 54 1e-05 ref|NP_663686.1|structural protein 54 1e-05 ref|NP_108727.1|minor structural protein 3 54 1e-05 ref|NP_116510.1|unknown 53 2e-05 ref|NP_112710.1|ORF47 53 3e-05 ref|NP_076626.1|endopeptidase 53 3e-05 ref|NP_932523.1|hypothetical protein 53 3e-05 ref|NP_058454.1|orf 16 51 8e-05 ref|NP_061640.1|phi PVL ORF 15 and 16 homologue 50 1e-04 ref|YP_195210.1|virion structural protein 50 2e-04 ref|NP_899291.1|Sir2 50 2e-04 ref|NP_047971.2|gp26 49 5e-04 ref|NP_064745.1|gp7 48 7e-04 ref|NP_818206.1|gp133 47 0.001 ref|YP_195180.1|virion structural protein 47 0.002 ref|NP_690787.1|immunity repressor 47 0.002 ref|YP_164732.1|orf97 46 0.003 ref|NP_203486.1|hypothetical protein 46 0.003 ref|NP_945089.1|gp58 46 0.003 ref|NP_861745.1|RB69ORF055c hypothetical protein 45 0.004 ref|NP_777327.1|hypothetical protein 45 0.004 ref|NP_943831.1|gp53 45 0.006 ref|YP_195256.1|hypothetical protein 45 0.006 ref|NP_835645.1|putative transposase 45 0.006 ref|NP_536415.1|putative chromosome partitioning protein 44 0.010 ref|NP_049403.2|putative tail component protein 44 0.017 ref|NP_818167.1|gp94 44 0.017 ref|NP_049935.1|minor tail protein 43 0.028 ref|NP_835564.1|hypothetical protein 43 0.028 ref|NP_958615.1|77ORF001 43 0.028 ref|YP_164769.1|orf134 42 0.037 ref|YP_003907.1|putative tail tape measure protein 42 0.037 ref|NP_945090.1|gp59 42 0.037 ref|YP_195253.1|hypothetical protein 42 0.049 ref|NP_944303.1|conserved phage mega protein 41 0.11 ref|NP_958267.1|hypothetical protein 41 0.11 ref|NP_612999.1|CI protein 40 0.14 ref|YP_006479.1|DarB 40 0.14 ref|YP_024951.1|putative DNA polymerase III protein 40 0.14 ref|NP_049485.1|repressor protein CI 40 0.14 ref|YP_024814.1|Pas28 40 0.14 ref|YP_024813.1|Pas27 40 0.14 ref|NP_817972.1|gp121 40 0.18 ref|NP_536643.1|hypothetical protein 40 0.18 ref|NP_695088.1|putative helicase 40 0.24 ref|NP_049999.1|putative helicase 40 0.24 ref|NP_049952.1|putative helicase 40 0.24 ref|NP_056709.1|putative helicase 40 0.24 ref|NP_049618.1|gp60 topoisomerase II, large subunit, C-terminal... 40 0.24 ref|NP_046574.1|unknown 40 0.24 ref|NP_039621.1|gene III product 39 0.31 ref|NP_817477.1|gp27 39 0.41 ref|YP_164760.1|orf125 39 0.41 ref|NP_690769.1|ORF36 39 0.41 >ref|YP_164695.1|transposase Length = 387 Score = 151 bits (382), Expect = 4e-35 Identities = 120/390 (30%), Positives = 181/390 (46%), Gaps = 30/390 (7%) Frame = -3 Query: 29324 RAYQYRFYPTPEQAQLLARTFGCVRFVYNAVLRYRTDAFYQRQERIGYVEANA--YLTRM 29151 + + R YP+ Q L + FG RFV+N +L A Y+ +V YL + Sbjct: 3 KGVKIRLYPSKHQQNQLLQMFGNDRFVWNQMLAM-AKARYKNNPSSKFVNEYGMNYLLKQ 61 Query: 29150 KKADETAFLNEVSSVPLQQCLRHQQAAFKHFFEGRARYPAFKNKRHRQAAEFTRSAFKYR 28971 K E +FL E S LQ + AFK F+ + YP FK++ + + +S K Sbjct: 62 LK-QEYSFLKESDSSSLQVSNHNLAQAFKTLFKHQGGYPRFKSRHSAKQSYTGKSTCK-- 118 Query: 28970 NGQLFLAKCKEPL----AIRWSRELPSEPTTI---TISKDSAGRYFVSCLCEFTP-ETLP 28815 +AK + L +IR S+ I T+ + GRY++S E + L Sbjct: 119 ----IVAKRRVKLPKLGSIRTSKTNILNGCKIKRYTLILEPTGRYYLSLTVEDNSIKPLE 174 Query: 28814 VTPRMTGIDLGLKDLFITDQGERIGNPRHT----------AKYAAR--LAKAQRRLSKKK 28671 T + G+DLG+ DL IT G++ + + T +K++ R +A + R Sbjct: 175 KTGAVVGVDLGVADLAITSDGKKYESFKPTYLDKQVRSWQSKFSKRKYIATTEVRQWNHN 234 Query: 28670 LGSXXXXXXXXXXXXXXXKISDC--------RMDRLHKLSRRLINENQVVCVESLKVKNM 28515 +I C R D LHK++ L+ + V+ +E L+ KN+ Sbjct: 235 HNDYKMLVEDYHNWQRAKRIKACYQAKIANKRKDYLHKITTELVEKYDVIAMEDLRTKNL 294 Query: 28514 LRNPSLAKAIADAGWGEFARQLEYKAQWAGRQLVRIDPWYPSSKRCSDCGHIKDALPLSV 28335 L+N LAK+I++ W EF LEYK +W G+QL+ + P Y +S+ CS CG+ PL + Sbjct: 295 LKNHHLAKSISNQSWREFRTILEYKCKWYGKQLIVVKPNY-TSQICSSCGYHSGKKPLEI 353 Query: 28334 RAWDCPACGVTHDRDINAARNIKAAGLAVL 28245 R W C CG HDRD+NAA NI GL L Sbjct: 354 REWTCYKCGTHHDRDVNAAVNILNKGLEKL 383 >ref|NP_047360.1|ORF348; homologous to eryA gene product in L07626 Length = 348 Score = 130 bits (327), Expect = 1e-28 Identities = 101/341 (29%), Positives = 158/341 (46%), Gaps = 27/341 (7%) Frame = -3 Query: 29150 KKADETAFLNEVSSVPLQQCLRHQQAAFKHFFEGR--ARYPAFKNKRHRQAAEFTRSAFK 28977 KK E FL + + LQQ L+ A+K F+ + A+ P +K K R + + Sbjct: 3 KKMPEYIFLQDAYTDNLQQKLKDLHTAWKRCFDKKLAAKAPVWKRKNEG------RDSIR 56 Query: 28976 YRNGQLFLA----KCKEPLAIRW-----SRELPSEPTTITISKDSAGRYFVSCLCEF-TP 28827 + N + + + K P + W S+ + + TIS+ AG++++S E T Sbjct: 57 FVNFEKYCCLENRRVKLPSGLGWVKFRQSQRVNGKIKNATISQ-LAGQWYISFQVEIETA 115 Query: 28826 ETLPVTPRMTGIDLGLKDLFITDQGERIGNPRHTAKYAARLAKAQRRLSKKKLGSXXXXX 28647 E + + G+D G+ L G K +LA+ QR+LS+K S Sbjct: 116 EPNHTSTTIVGLDAGVAKLATLSDGTVFEPVNSFQKNQKKLARLQRQLSRKVKFSNNWQK 175 Query: 28646 XXXXXXXXXXKISDCRMDRLHKLSRRLINENQVVCVESLKVKNMLRNPS----------- 28500 +I++ R D LHK++ + + ++ +E LKV NM ++ + Sbjct: 176 QKRKIQCLHSRIANIRRDYLHKVTTTVSKNHAMIVIEDLKVSNMSKSAAGTVSQPGRNVR 235 Query: 28499 ----LAKAIADAGWGEFARQLEYKAQWAGRQLVRIDPWYPSSKRCSDCGHIKDALPLSVR 28332 L ++I D GW E RQLEYK W G Q++ + P Y +S+RC+ CGH LS Sbjct: 236 AKSGLNRSILDQGWYEMRRQLEYKQLWRGGQVLAVPPAY-TSQRCACCGHTAKENRLSQS 294 Query: 28331 AWDCPACGVTHDRDINAARNIKAAGLAVLALGENVSGMEPV 28209 + C CG T + D+N ARNI AAG AVLA G + P+ Sbjct: 295 QFRCQVCGYTANADVNGARNILAAGHAVLACGGTMQSDRPL 335 >ref|NP_932589.1|hypothetical protein Length = 507 Score = 114 bits (285), Expect = 8e-24 Identities = 106/423 (25%), Positives = 186/423 (43%), Gaps = 14/423 (3%) Frame = +3 Query: 482736 STQDYFLGGRRIPGWAIGLSVMATQASAITFIGAPGWGFEGGLERLVTFLNVPLAMAVLI 482915 +T+ YF+ R +P W +G +++A SA IG G + G+ L LA+ V Sbjct: 30 TTKSYFMADRSLPWWILGCAILAANISAEHLIGTTGSAYAMGIAIGAFELTGALALVVAA 89 Query: 482916 FLLVPVFHRAGIYSIYELLERRFGPATRSVSAGLFLVARGLAT-GVVLYAPALVLSVVTG 483092 +L +P F + I ++ + L ++ RS+ A ++V L V Y AL + + G Sbjct: 90 WLAIPYFVKNQITTMPQFLAMKYDNRVRSMFATFWIVVYTLVNLTAVSYMGALAFTSI-G 148 Query: 483093 WSVNLTIVVMAVLAVSYTVLGGISAVIWTDVIQMFVL--------WLGALVSMGLMVASL 483248 + + + + AV Y+ +GG+S+++WTD IQ+ +L W L + G+ V S Sbjct: 149 IPLEVGVWALIGFAVLYSAVGGLSSLVWTDFIQVGILLTAGIACTWF-TLDAYGVHVGST 207 Query: 483249 PGGWSDVFAFGAAQGMFDTLDLSLDPG-VTYSLWAGLFG--GIFL-HIAYFGTDQSQIQR 483416 S V + F L L+PG Y G+ G G+FL ++YF +Q +Q Sbjct: 208 SIAGSMVSLYKELPNHF---QLVLEPGHPAYENIPGILGVVGVFLGSLSYFAFNQFIVQG 264 Query: 483417 VLTSPDVQQGQRSLLIGGYLLVPQMLLFLFIGVMLATYYDQHGLAAPDNLNELFPRYVVS 483596 L + V++ Q+ ++ +L + L+ + G+M Y +G P ++ +P + + Sbjct: 265 ALAAKSVKEAQKGMVFAAFLKLLMPLVVIIPGIM--AYSMTNGSLTPS--DKAYPWLIDN 320 Query: 483597 AFPPGLAGLVIAGVFXXXXXXXXXXXXXXXXXXVRDFYTRYVRPDASEAHYLKASRWATV 483776 P G GLV+A +F D + +P+ S+ +K +R V Sbjct: 321 FMPAGFHGLVMAALFAAIISTLAAILNSISTMFTLDI-VKVHKPELSDKTLMKVARTVVV 379 Query: 483777 FWGLYATVFAF-FAGNLGPVIEAVNRIGSWFYGALLGTFLLAMLSHRTNARGALSGLVLG 483953 G A F GNL + + A+L F A L +TN+ A++ V Sbjct: 380 VCGAIGASLAIPFLGNLDQAYHFIQEFVGFVTPAMLVIF-FAALYWKTNSNAAIAVTVFS 438 Query: 483954 MVS 483962 + + Sbjct: 439 VAA 441 Score = 62.0 bits (149), Expect = 5e-08 Identities = 85/383 (22%), Positives = 156/383 (40%), Gaps = 27/383 (7%) Frame = -2 Query: 305757 IMNSHVFLGAFVTYVVAMIAFGWWVSRHSRSNGDDFLLGGRSIPIFLTIGTTVATMVGTG 305578 +++ +F G V+A + GW S ++S + + RS+P ++ +A + Sbjct: 3 LLDMVIFAGYIGCIVMAGLVIGWKKSGTTKS----YFMADRSLPWWILGCAILAANISAE 58 Query: 305577 SSMGAVGFGYANGWAGALYGIGGSIGVLLLAAWFAPVR--KLRFMTMSEELSYYVGANRW 305404 +G G YA G A + + G++ L++AAW A K + TM + L+ NR Sbjct: 59 HLIGTTGSAYAMGIAIGAFELTGALA-LVVAAWLAIPYFVKNQITTMPQFLAMKYD-NR- 115 Query: 305403 VRNIVAVLIYIACIGWLGAHILGGGLYLSWMADIDLTT------ARVLVALGFGI-YCVI 305245 VR++ A W+ + L +S+M + T+ V +GF + Y + Sbjct: 116 VRSMFATF-------WIVVYTLVNLTAVSYMGALAFTSIGIPLEVGVWALIGFAVLYSAV 168 Query: 305244 GGYMAVVWTDTVQAVILFVGFIVMAIIALFEVG---GFSGLGANMDVATTSFL------- 305095 GG ++VWTD +Q IL I L G G + + +M V+ L Sbjct: 169 GGLSSLVWTDFIQVGILLTAGIACTWFTLDAYGVHVGSTSIAGSM-VSLYKELPNHFQLV 227 Query: 305094 ---GIDKIGVVPALSLAAVIAVGVLATPSYRQRIYSG----NSVHSVRKSFVITGILYMI 304936 G +P + + +G L+ ++ Q I G SV +K V L ++ Sbjct: 228 LEPGHPAYENIPGILGVVGVFLGSLSYFAFNQFIVQGALAAKSVKEAQKGMVFAAFLKLL 287 Query: 304935 FSIIPAIIGMATHAL-NPGLDNSNFAFPFLATEIXXXXXXXXXXXXXLSATMSSASSDAI 304759 ++ I G+ +++ N L S+ A+P+L M++ + I Sbjct: 288 MPLVVIIPGIMAYSMTNGSLTPSDKAYPWLIDNF--------MPAGFHGLVMAALFAAII 339 Query: 304758 AGVSILLRDVYVLFTGHTPSAHK 304690 + ++ +L + +FT HK Sbjct: 340 STLAAILNSISTMFTLDIVKVHK 362 Score = 41.6 bits (96), Expect = 0.063 Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 7/171 (4%) Frame = -2 Query: 288828 WFGGCVSIGTFAMGSSIVGTLNLLQASLAIAIGCFVIGVALTINGAAGYKYGIPFMV--Q 288655 W GC + ++GT A + IAIG F + AL + AA IP+ V Q Sbjct: 44 WILGCAILAANISAEHLIGTTGSAYA-MGIAIGAFELTGALALVVAAWL--AIPYFVKNQ 100 Query: 288654 ARSAFGFTGTRLPGLIRAVPAIVW---YGFQSWIGAGALNAVSSTLLGF--DNLVFYFIA 288490 + F + +R++ A W Y + + A++ T +G + V+ I Sbjct: 101 ITTMPQFLAMKYDNRVRSMFATFWIVVYTLVNLTAVSYMGALAFTSIGIPLEVGVWALIG 160 Query: 288489 FQLLQIALSVFGFQGIKWLENIGSGFILASLVYMFFSVLDKYGDVIGEQLI 288337 F +L A+ G + W + I G +L + + + LD YG +G I Sbjct: 161 FAVLYSAVG--GLSSLVWTDFIQVGILLTAGIACTWFTLDAYGVHVGSTSI 209 >ref|NP_899293.1|topoisomerase II large subunit Length = 597 Score = 113 bits (282), Expect = 2e-23 Identities = 145/566 (25%), Positives = 228/566 (40%), Gaps = 31/566 (5%) Frame = +1 Query: 195952 SIKVLKGLDAVRKRPGMYIGDTDDGT----------------GLHHMVFELVDNSIDEAL 196083 + ++L V KRPGMYIG D GL ++ E++DNS+DEA+ Sbjct: 6 NFQILSDKQHVLKRPGMYIGSVDREAHERFVLGEYKQIEYVPGLVKIINEVIDNSLDEAI 65 Query: 196084 AGHCSEIRVVIHPDES--ITVSDNGRGIPTDI----HSEEGVSAAEVIMTVLHAGGKFDD 196245 V+ E IT++DNGRGIP D H E + E T AG F+D Sbjct: 66 RTKFKFANVIEVKVEGNRITIADNGRGIPQDKVIDPHGNE-LLRPEAAWTRTKAGSNFED 124 Query: 196246 NSYKXXXXXXXXXXXXXNALSEELKLTVWRAGQVYE--QIYHHGVPDSPLDVVGKTEKSG 196419 + + N S + G+ + ++ + +T K G Sbjct: 125 D--RTTVGMNGVGAALTNYFSHQF------IGKTCDGKNTVTVSCSNNAERIFVRTSKGG 176 Query: 196420 TQ---VNFKPSTETFANIEFH---YDILAKRLRELSFLNSGVAIRLIDERSGAEELFHYE 196581 TQ V F P F +I+ RL LS + E F Y Sbjct: 177 TQGTSVEFIPDFNRFGVFGISPQDEEIIKDRLAALSV-------------AFPEITFKYN 223 Query: 196582 GGLRAFVDHLNTNKTALNQIFHFETQRDDGIAVEVAMQWNDTFSENIFCYTNNIPQHDGG 196761 G A + F F D +A+ +A +D F N F N + +GG Sbjct: 224 GKKHAPTLKQYAKMFGTDVSFEF-----DNVALFIAA--SDEFRHNSFI--NGVHTINGG 274 Query: 196762 THLAGFRAALTRTLNHYIESEGLLKKAKVNTSGDDAREGLTAIVSVK-VPDPKFSSQTKD 196938 TH+ F L L I+ +K K+N + GLT + ++ DPKF SQTK+ Sbjct: 275 THVDYFSNKLADELIPMIK-----RKHKINVPKPQLKNGLTIGLFIRNFVDPKFDSQTKE 329 Query: 196939 KLVSSEVKTAVEQEMGRQFSDYLVERPNEAKAIVNKMLDXXXXXXXXXXXXDMTRRKGAL 197118 +L SS+ V + D + ++ I+ +++ ++ R++ Sbjct: 330 RLTSSQGD--VSPYLKDISYDKIAKKILADDDIIMPIIEALLAKQHAAEARELARKQKKA 387 Query: 197119 DIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARF 197298 A K+ D + L+L EG SA G + RD + +PL+GK+L+ R Sbjct: 388 QNA----KVVDHIKATMPGGTLFLTEGKSAIGYLIKVRDSKKHGGIPLRGKVLSTWGKRP 443 Query: 197299 DKMLSSAEVGTLITALGCGIGREEFNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQM 197478 K++ + E+ +++ L +G ++ + YH I I+ DADVDG LL FF Sbjct: 444 AKIMENKELCDIMSVLNIQLGNDDIR--DMYYHDIGILVDADVDGKGSIFPLLLAFFYNW 501 Query: 197479 PELIERGHVFIAQPPLYKIKRGKQET 197556 PEL ++ + + P+ I K+ET Sbjct: 502 PELYKQKRIKFVRTPVV-IATNKKET 526 >ref|NP_665964.1|putative plasmid partitioning protein Soj Length = 256 Score = 103 bits (257), Expect = 1e-20 Identities = 67/175 (38%), Positives = 93/175 (53%), Gaps = 5/175 (2%) Frame = -1 Query: 165367 IALTNQKGGVGKTTTAVNLAACLAALDKRVLLVDLDPQGHATMGSGI----DKHELDGSV 165200 I +TNQKGG GKTTT +N+A L L VL++DLDPQGHAT G G D E D S+ Sbjct: 3 IGVTNQKGGAGKTTTTLNVAGALNQLGNDVLVIDLDPQGHATEGLGFEDLYDDPERD-SL 61 Query: 165199 LEVLLEGRRASEV-ILDCPDAGYALLPGNGDLTAAEVDLLDRDGRERCLGEALGSVAASY 165023 +VL E R E+ L +P + + AE L + RE L L + Sbjct: 62 FDVLPELERMDELEQLVVEHQEVDCVPSHETMINAEDALANVMKREERLEMLLDDADGRW 121 Query: 165022 DVVIIDCPPSLNMLTVNALTAADGVLIPLQCEFYALEGLSALLDTVEQIQASVNP 164858 D V++DCPP+L +LT NA+ A VLIP Q + ++ + L + I+++ P Sbjct: 122 DYVLVDCPPNLGVLTDNAIVATGNVLIPAQAKSTSIRAIELLFKQLRSIESAFGP 176 >ref|NP_861694.1|gp60plus39 large subunit topoisomerase II Length = 606 Score = 102 bits (253), Expect = 4e-20 Identities = 119/523 (22%), Positives = 222/523 (42%), Gaps = 13/523 (2%) Frame = +1 Query: 196030 GLHHMVFELVDNSIDEALAGH---CSEIRVVIHPDESITVSDNGRGIPTDIHSE---EGV 196191 GL ++ E++DNS+DEA+ ++I V I ++ ++V DNGRGIP + ++ E + Sbjct: 48 GLVKLIDEIIDNSVDEAIRTSFKFANKIDVQIKNNQ-VSVEDNGRGIPQGLVTDQTGEQI 106 Query: 196192 SAAEVIMTVLHAGGKFDDNSYKXXXXXXXXXXXXXNALSEELKLTVWRAGQVYEQIYHHG 196371 T+ AGG F D+S + N S L + G+ + Sbjct: 107 PGPVAAWTIPKAGGNFGDDSERKTGGMNGVGSSLTNIFST-LFTGITSDGENEITVNCSN 165 Query: 196372 VPDSPLDVVGKTEKSGTQVNFKPSTETFAN---IEFHYDILAKRLRELSFLNSGVAIRLI 196542 ++ K++ GT+V F P +F + + DI RL+ L+ + + Sbjct: 166 GMENKSWSSKKSKGKGTKVIFTPDFTSFEEHNLSQIYLDITLDRLQTLAVVYPDIKFTFN 225 Query: 196543 DERSGAEELFHYEGGLRAFVDHLNTNKTALNQIFHFETQRDDGIAVEVAMQWNDTFSENI 196722 ++ +G + F + Q +D +++ D F Sbjct: 226 GKK--------VDGNFKRFAKQFGEDNII---------QENDKVSIAFTTS-PDGFRH-- 265 Query: 196723 FCYTNNIPQHDGGTHLAGFRAALTRTLNHYIESEGLLKKAK-VNTSGDDAREGLTAIVSV 196899 Y NNI +GG H+ + H + G+ KK K + + +E LT ++ + Sbjct: 266 LTYVNNIHTKNGGHHV---ECVMDDICEHLLP--GIKKKYKGIEVTKARVKECLTMLMFI 320 Query: 196900 K-VPDPKFSSQTKDKLVSS--EVKTAVEQEMGRQFSDYLVERPNEAKAIVNKMLDXXXXX 197070 + + + +F SQTK++L S+ +++ ++ + ++ + L++ +A++ +++ Sbjct: 321 RDMSNMRFDSQTKERLTSTYGDIRNHIQLD-AKKIAQALLKN----EALIMPIVEAALAR 375 Query: 197071 XXXXXXXDMTRRKGALDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQA 197250 T+ A + + Q + + L+L EGDSA G RDR Sbjct: 376 KLAAEKAAETKAAKKATKAKVHKHIKANQCGKDADTTLFLTEGDSAIGYLIDVRDRELHG 435 Query: 197251 ILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGREEFNPDKLRYHSIIIMTDADVD 197430 PL+GK++N + M+ + E+ + G +G + N + Y +I IMTDAD D Sbjct: 436 GFPLRGKVMNSWGMSYADMMKNKELFDICAITGLILGEKAENTN---YRNIAIMTDADHD 492 Query: 197431 GSHIRTLLLTFFFRQMPELIERGHVFIAQPPLYKIKRGKQETY 197559 G L FF PEL E+G + + P+ + GK + + Sbjct: 493 GLGSIYPALLAFFSNWPELFEQGRIRFVKTPVIIAQIGKTQKW 535 >ref|NP_891577.1|topoisomerase II large subunit Length = 607 Score = 102 bits (253), Expect = 4e-20 Identities = 137/563 (24%), Positives = 236/563 (41%), Gaps = 37/563 (6%) Frame = +1 Query: 195949 SSIKVLKGLDAVRKRPGMYIGDTDDGT----------------GLHHMVFELVDNSIDEA 196080 S ++L + V KR GMYIG T GL ++ E++DNS+DEA Sbjct: 2 SEFRILSDREHVLKRAGMYIGSTTYEEHQRFLFGKWTKISYVPGLVKIIDEIIDNSVDEA 61 Query: 196081 LAGHCSEIRVVIHPDES--ITVSDNGRGIPTD-IHSEEGVSAAEVIM--TVLHAGGKFDD 196245 + + V+ ++ +TV+DNGRGIP + + EG + + T AG FDD Sbjct: 62 IRTNFEFANVISVDIQNNIVTVTDNGRGIPQHMVTTPEGTQIPQPVAAWTRTKAGSNFDD 121 Query: 196246 NSYKXXXXXXXXXXXXXNALSE---------ELKLTVWRAGQVYEQIYHHGVPDSPLDVV 196398 + + N S+ E ++TV + E I P Sbjct: 122 TN-RLTQGMNGVGSSLSNFFSDWFTGVTCDGETEMTV-QCTNGAENITWSSKP------- 172 Query: 196399 GKTEKSGTQVNFKPSTETFANIEFH---YDILAKRLRELSFLNSGVAIRLIDERSGAEEL 196569 ++ GT V F P + F DI+ RL+ LS + + + +R ++ Sbjct: 173 --SKLKGTNVTFCPDFDHFEGYMMDNSVLDIVHDRLQSLSVIFPKITFKFNGKRIVSK-- 228 Query: 196570 FHYEGGLRAFVDHLNTNKTALNQIFHFETQRDDGIAVEVAMQWNDTFSENIFCYTNNIPQ 196749 F D+ K + F E ++ +A+ A++ S + + N + Sbjct: 229 ---------FKDYA---KLYNDDPFVIE-DKNFSLALVPAVEGEGFKSVS---FANGLFT 272 Query: 196750 HDGGTHLAGFRAALTRTLNHYIESEGLLKKAKVNTSGDDAREGLTAIVSVK-VPDPKFSS 196926 +GGTH+ L + I+ K+ KV+ + + GLT I+ V+ +P+ +F S Sbjct: 273 KNGGTHVDYVTDDLCEEIVKRIK-----KEYKVDVTKAAVKSGLTCILIVRELPNLRFDS 327 Query: 196927 QTKDKLVS--SEVKTAVEQEMGRQFSDYLVERPNEAKAIVNKMLDXXXXXXXXXXXXDMT 197100 QTK++L + ++K ++ + ++ + + ++ N I+ +L Sbjct: 328 QTKERLTNPTGDIKRHIDLDF-KKLAKVIAKKENIIMPIIAVVLARKEAADKAAATKAAK 386 Query: 197101 RRKGALDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILN 197280 K A + L + + L+L EGDSA RD+ PL+GK L Sbjct: 387 AAKRAKVAKHVKANLIGTDAE----TTLFLTEGDSAINYLISVRDQDLHGGFPLRGKTLT 442 Query: 197281 VEKARFDKMLSSAEVGTLITALGCGIGREEFNPDKLRYHSIIIMTDADVDG-SHIRTLLL 197457 + K++ +AE+ ++ G G + D ++Y +I IMTDAD DG I+ L+ Sbjct: 443 TWEQPEAKIVKNAEIFNIMAITGLQFGVDAL--DVMQYKNIAIMTDADTDGIGSIKPSLI 500 Query: 197458 TFFFRQMPELIERGHVFIAQPPL 197526 +FF R PEL E G + + P+ Sbjct: 501 SFFAR-WPELFEDGRIRFIKTPI 522 >ref|NP_943883.1|topoisomerase II large subunit Length = 613 Score = 95.1 bits (235), Expect = 5e-18 Identities = 137/576 (23%), Positives = 228/576 (39%), Gaps = 34/576 (5%) Frame = +1 Query: 195946 SSSIKVLKGLDAVRKRPGMYIGDTDDGT----------------GLHHMVFELVDNSIDE 196077 S KVL + MYIG T T GL + E++DNS+DE Sbjct: 2 SQEFKVLSDKEHCLINTDMYIGSTSTETHDVLVDGKFVQIAYVPGLVKITDEVIDNSVDE 61 Query: 196078 ALAG---HCSEIRVVIHPDESITVSDNGRGIPTD-IHSEEGVSAAEVIMTVLHAGGKFDD 196245 A+ H ++I VVI D ++V DNGRG+P + + EGV + A + Sbjct: 62 AIRTNFEHANQIEVVIK-DNQVSVKDNGRGLPQGMVVTPEGVEVPLPLAAWTRARAGSNF 120 Query: 196246 NSYKXXXXXXXXXXXXXNALSEELKLTVWRAGQVYEQIYHHGVPDSPLDVVGKTEKSG-- 196419 ++ + N S+ V G + ++ D V T K+G Sbjct: 121 SADRKTIGKNGVGSALTNFFSDSF---VGETGNGTNTVTVRCTNNA--DEVSYTTKAGKF 175 Query: 196420 --TQVNFKPSTETFANIEFHYDILAKRLRELSFLNSGVAIRLIDERSGAEELFHYEGGLR 196593 T V F P F + D +++ + L V I + +++ EG Sbjct: 176 KGTNVTFVPDFTRFGVFQLDEDF--EQVIQSRLLTLAVNFPPITFKYNGKKV---EGKFS 230 Query: 196594 AFVDHLNTNKTALNQIFHFETQRDDGIAVEVAMQWNDTFSENIFCYTNNIPQHDGGTHLA 196773 F Q + DD +++ A ++ + + + N + GG H+ Sbjct: 231 KFAA----------QFGDVVSHNDDNVSLFFAT--SEEYRQ--LSFVNGVHTKQGGNHVY 276 Query: 196774 GFRAALTRTLNHYIESEGLLKKAKVNTSGDDAREGLTAIVSVK-VPDPKFSSQTKDKLVS 196950 G +L+ L I+ ++ K+ + +E L + ++ + PK+ QTK++L S Sbjct: 277 GVLDSLSDELIPMIK-----RQHKIEINKARIKECLLIGLFIRNLVAPKYDGQTKERLSS 331 Query: 196951 SEVKTAVEQEMG-RQFSDYLVERPNEAKAIVNKMLDXXXXXXXXXXXXDMTRRKGA---- 197115 + + + + +++ P I+ L + K A Sbjct: 332 PWAQIRDHMNLDYKALARKILKTPEVIDPIIASALAKKEAADKAAATKAQKKAKKANVAK 391 Query: 197116 -LDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKA 197292 + AGL G+L + L+L EGDSA G + R+ TQ PL+GK+LNV Sbjct: 392 HVAAAGL-GRLK---------TMLFLAEGDSAIGPFTRFRNEETQGSYPLRGKMLNVWNL 441 Query: 197293 RFDKMLSSAEVGTLITALGCGIGREEFNPDKLRYHSIIIMTDADVDG-SHIRTLLLTFFF 197469 ++L + E+ L+ L + +E Y I IMTDAD DG I L + FF+ Sbjct: 442 PDHEVLKNKEIADLLGILNVELRSKE----APAYTDIAIMTDADQDGKGSIAMLAIAFFY 497 Query: 197470 RQMPELIERGHVFIAQPPLYKIKRGKQE--TYLKDE 197571 + P E+G + I + P Y GK+ +Y +DE Sbjct: 498 KFWPHWFEQGRIHIVRTPEYISTNGKKTDWSYSRDE 533 >ref|NP_049621.1|gp39 topoisomerase II, large subunit, N-terminal region Length = 516 Score = 90.1 bits (222), Expect = 2e-16 Identities = 121/511 (23%), Positives = 205/511 (40%), Gaps = 36/511 (7%) Frame = +1 Query: 195949 SSIKVLKGLDAVRKRPGMYIGDTDDGT----------------GLHHMVFELVDNSIDEA 196080 + IK+L ++ ++KR GMYIG + + T GL ++ E++DNS+DE Sbjct: 4 NEIKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDEG 63 Query: 196081 LAGH---CSEIRVVIHPDESITVSDNGRGIPTDI---HSEEGVSAAEVIMTVLHAGGKFD 196242 + ++I V I ++ +TV DNGRGIP + + E + T+ AGG F Sbjct: 64 IRTKFKFANKINVTIKNNQ-VTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFG 122 Query: 196243 DNSYKXXXXXXXXXXXXXNALSEELKLTVWRAGQVYEQIY---HHGVPDSPL-DVVGKTE 196410 D+ + N S + V G I +G+ + D+ GK + Sbjct: 123 DDKERVTGGMNGVGSSLTNIFSV---MFVGETGDGQNNIVVRCSNGMENKSWEDIPGKWK 179 Query: 196411 KSGTQVNFKPSTETFANIEF---HYDILAKRLRELSFLNSGVAIRLIDERSGAEELFHYE 196581 GT+V F P +F E + DI RL+ L+ + + ++ Sbjct: 180 --GTRVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTFNGKKVQG------- 230 Query: 196582 GGLRAFVDHLNTNKTALNQIFHFETQRDDGIAVEVAMQWNDTFSENIFCYTNNIPQHDGG 196761 N K A H Q + ++ V D F + Y NNI +GG Sbjct: 231 ----------NFKKYARQYDEHAIVQEQENCSIAVGRS-PDGFRQ--LTYVNNIHTKNGG 277 Query: 196762 THLAGFRAALTRTLNHYIESEGLLKKAKVNTSGDDAREGLTAIVSVK-VPDPKFSSQTKD 196938 H+ + L I+ +K K++ + +E LT ++ V+ + + + QTK+ Sbjct: 278 HHIDCAMDDICEDLIPQIK-----RKFKIDVTKARVKECLTIVMFVRDMKNMRLIRQTKE 332 Query: 196939 KLVS--SEVKTAVEQEMGRQFSDYL----VERPNEAKAIVNKMLDXXXXXXXXXXXXDMT 197100 +L S E+++ ++ + + D L + P A+ K+ Sbjct: 333 RLTSPFGEIRSHIQLDAKKISRDILNNEAILMPIIEAALARKLAAEKAAETKAAKKASKA 392 Query: 197101 RRKGALDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILN 197280 + + A L GK AD + L+L EGDSA G RD+ PL+GK+LN Sbjct: 393 KVHKHIK-ANLCGKDAD--------TTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLN 443 Query: 197281 VEKARFDKMLSSAEVGTLITALGCGIGREEF 197373 + ML + E+ + G +G + F Sbjct: 444 SWGMSYADMLKNKELFDICAITGLVLGEKAF 474 >ref|NP_932362.1|topoisomerase II large subunit Length = 607 Score = 87.0 bits (214), Expect = 1e-15 Identities = 132/568 (23%), Positives = 226/568 (39%), Gaps = 34/568 (5%) Frame = +1 Query: 195946 SSSIKVLKGLDAVRKRPGMYIGDT----------------DDGTGLHHMVFELVDNSIDE 196077 S KVL + V RP MY+G GL ++ E++DNS+DE Sbjct: 2 SDEFKVLTPREHVILRPNMYVGSVAYEPHERFLFGKFQSVSYVPGLVKIIDEIIDNSVDE 61 Query: 196078 ALA-----GHCSEIRVVIHPDESITVSDNGRGIPTD-IHSEEGVSAAEVIM-TVLHAGGK 196236 + + +IR + + S+TV DNGRGIP + + +G V T AG Sbjct: 62 GIRTDFKFANKIDIRFDLL-EGSVTVVDNGRGIPQSMVETPDGEMPKPVAAWTQTMAGSN 120 Query: 196237 FDDNSYKXXXXXXXXXXXXXNALSEELKLTVWRAGQVYEQIYHHGVPDSPLDVVGKTEK- 196413 FDD + + N S++ G S +D K K Sbjct: 121 FDDTN-RVSMGMNGVGSSLTNFFSKKFIGETCDGKNFLTVTCSEGA--SNIDWETKPGKI 177 Query: 196414 SGTQVNFKPSTETFANIEFHY---DILAKRLRELSFLNSGVAIRLIDERSGAEELFHYEG 196584 GT V F P + F DI++ R+ LS + + + + + + Sbjct: 178 KGTSVYFIPDEKHFEGRTIDQQIIDIISDRITALSVVFPQIKFTINGQIASMK------- 230 Query: 196585 GLRAFVDHLNTNKTALNQIFHFETQRDDGIAVEVAMQWNDTFSENIFCYTNNIPQHDGGT 196764 F D+ ++F E+ + +A+ N Y N + +GG+ Sbjct: 231 ----FADYA--------KMFGDESLIVESDRFSIAI-CNSPEGFRQVSYVNGLNIKNGGS 277 Query: 196765 HLAGFRAALTRTLNHYIESEGLLKKAKVNTSGDDAREGLTAIVSVK-VPDPKFSSQTKDK 196941 H+ ++ L I+ KK K+ S +E LT +V V+ + + +F SQTK++ Sbjct: 278 HIDYLVDGISEELMPAIK-----KKHKIEISKARVKECLTMVVVVRGMSNLRFDSQTKER 332 Query: 196942 LVS--SEVKTAVEQEMGRQFSDYLVERPNEAKAIVNKMLDXXXXXXXXXXXXDMTRRKGA 197115 L + EVK+ + + + L ++ AI+ +++ MT+ + A Sbjct: 333 LTNPAGEVKSHFDLDFKK-----LSKQIMNTDAILQPIIEAALARHLAAEKAAMTKAQKA 387 Query: 197116 LDIAGLPGKL-ADCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKA 197292 + A ++ + L+L EG+SA G + +D L+GK++N Sbjct: 388 AAKTNCAKHIKAGEWGRNDIETTLFLTEGESAIGYLLKVKDENLHGGYALRGKVMNTWGM 447 Query: 197293 RFDKMLSSAEVGTLITALGCGIGREEFNPDKL---RYHSIIIMTDADVDGSHIRTLLLTF 197463 + +L + E+ + G + NPD + +Y +I IMTDAD DG L Sbjct: 448 KGSDVLKNNELSDICAITGLDLA----NPDDISQRKYKNIAIMTDADPDGQGSIYPCLLA 503 Query: 197464 FFRQMPELIERGHVFIAQPPLYKIKRGK 197547 FF + P+L + G V + P+ + +GK Sbjct: 504 FFARWPKLFDEGSVRFVKTPVVILNKGK 531 >ref|NP_046572.1|ABC transporter Length = 705 Score = 86.3 bits (212), Expect = 2e-15 Identities = 59/205 (28%), Positives = 106/205 (51%) Frame = -1 Query: 328315 VIDDLSLHIRPGEKIGLIGPSGAGKSTLVNLLLRFFELEGGAIRIDGQDIADVTQESLRA 328136 +++D++L + +K+ +IG SG GKST L + +++ +I ++G DI S+R Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 328135 KIGMVTQDTSLLHRSVRDNLLYGRPDATDDMAWQAAKQAHVAEFIESLRDIHGRRGFEAH 327956 +I + ++ L ++++NL G +++ A + EFI +L + + Sbjct: 558 RIVYIDENPFLFKGTIKENLCMGEIFDQNEIE-NACIMSQCHEFICNL-----DKQYSYK 611 Query: 327955 VGERGVKLSGGQRQRLAIARVMLKDAPILILDEATSALDSDVEAAIQENLDQLMRGKTVI 327776 + E G LS GQ+QRLA+AR +L +LILDE+ S +D D I E L ++ +I Sbjct: 612 LSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM--DCLII 669 Query: 327775 AIAHRLSTIAAMDRLVVMEQGRIVE 327701 I H + ++ +V RI+E Sbjct: 670 LITHNDPSNFKYNKKLVFRNNRIIE 694 Score = 83.6 bits (205), Expect = 1e-14 Identities = 87/475 (18%), Positives = 206/475 (43%), Gaps = 5/475 (1%) Frame = -3 Query: 255434 LRAHLLEVIGKRLDLELSSKLFEQAVRLRLNA-KPASTGAFTSQVREFESVREFFTSATA 255258 +R++L+ + ++D E+S+ F + +L +N + G S+ + +++FF++ Sbjct: 225 VRSYLIIKLSYKVDKEMSNVYFNKVTKLPINFFENREDGEVISRFNDGIYIKDFFSANFV 284 Query: 255257 GAISDLPFVALFVLIIAWIGGPVAWVPVAAIAGMIXXXXXXXXXXXXXXRENLREGAVKN 255078 AI D+ + L + +I + + ++ + ++ + L E K+ Sbjct: 285 TAIIDIILI-LGLGVILYRTNNILFLTIILPILLLSCLAILFFDHLKKKNQKLMEDKAKS 343 Query: 255077 -GVLLESLDQLETVKATRAEGRNLALWESLSAQLSNASIRLRAVTSMLTHSASLLQQLXX 254901 +L+ L + TV + L + + N++ + L+Q Sbjct: 344 TSLLINFLKNMTTVYSLNKTSFFLEKFHLTYDKQLNSTFSVAKAVISNEILKGLIQNSFT 403 Query: 254900 XXXXXXXXYRISAGDMTIGALIACSILGSRAIAPMGQTSALLARWQHVKAAVEGLDELMQ 254721 ++ M++G L+ + L + ++ + + ++ + Q A +++ Sbjct: 404 IIILWVGTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHVASIRFFDVVN 463 Query: 254720 APNESGAGQKVRKPRLHGDYRLEEVVVRHYEEGPAALKIDE--LTIEAGSRIALLGGNGA 254547 P + + + + + + + V + P +++ L ++ ++ ++G +G Sbjct: 464 YPVQQDSNENLTELDFIQNIK---TVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGT 520 Query: 254546 GKSTLLRLLSGFVEPTAGRVMLDDINITQIESADRRRAIGYLPQDIALFYGTLRDNLTLD 254367 GKST + LS + + L+ ++I + + R+ I Y+ ++ LF GT+++NL + Sbjct: 521 GKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCM- 579 Query: 254366 GAAYEDEEIFQALDSVGLGRFVRSHPQGLELPIASSGS-VSGGQRQAIGLARLVLQDPRI 254190 G ++ EI A F+ + + ++ +GS +S GQ+Q + LAR +L P++ Sbjct: 580 GEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQV 639 Query: 254189 VLLDEPTAAFDQNNEKRAVAFLKRWMEGRTLIVSTHKKPLLELTGRAIVLRDGKL 254025 ++LDE + D +N K L R +I+ TH P + +V R+ ++ Sbjct: 640 LILDESLSNIDPDNTKLIYETLHRM--DCLIILITHNDPSNFKYNKKLVFRNNRI 692 Score = 73.2 bits (178), Expect = 2e-11 Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 7/204 (3%) Frame = -1 Query: 135778 NLSLAYDD-KPALSDLTLKVPRHRVTAFIGPSGCGKSTLLRALNRLHDLNDQVTRTGRIR 135602 NL++ D + + D+ L + R IG SG GKST ++L++L+ + D+ I Sbjct: 487 NLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDK-----SIY 541 Query: 135601 LEGQDIHAREVDVAELRRRVGMVFQAPNPFPMSIYENVAYGLRLQGIRRKRELDEIIEWA 135422 L G DI+ D +R+R+ + + P F +I EN+ G + +EI Sbjct: 542 LNGLDIN--RYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEIF-------DQNEIENAC 592 Query: 135421 LLSAA------LWDEVKTNLHASAWTLSGGQQQRLVIARTLAVRPDVLLLDEPASALDPI 135260 ++S L + L + LS GQ+QRL +AR + +P VL+LDE S +DP Sbjct: 593 IMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPD 652 Query: 135259 STLKIEELIRGLKSQLTLVLVTHN 135188 +T I E + + ++L+THN Sbjct: 653 NTKLIYETLH--RMDCLIILITHN 674 Score = 71.6 bits (174), Expect = 6e-11 Identities = 51/187 (27%), Positives = 99/187 (52%), Gaps = 7/187 (3%) Frame = +2 Query: 337787 HVLRDIDLTVARGERIVICGPSGSGKSTLIRCINHLESHQQGEIVVNGVPMTQDVKRIEQ 337966 +++ DI+L + R ++++I G SG+GKST + ++ L I +NG+ D+ R + Sbjct: 497 YIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGL----DINRYDH 552 Query: 337967 --IRRNVGMVFQHFNLFPHLSVLENCCLSQTWVQKKPRAEAEKTAMEYLERVQIADQAHK 338140 IR+ + + ++ LF ++ EN C+ + + Q + E + E + D+ + Sbjct: 553 LSIRKRIVYIDENPFLFKG-TIKENLCMGEIFDQNE--IENACIMSQCHEFICNLDKQYS 609 Query: 338141 YP-----GQLSGGQQQRVAIARSLCMRPEVMLFDEPTSALDPEMIKEVLDVMIELAREGM 338305 Y LS GQ+QR+A+AR++ +P+V++ DE S +DP+ K + + L R Sbjct: 610 YKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYET---LHRMDC 666 Query: 338306 TMLCVTH 338326 ++ +TH Sbjct: 667 LIILITH 673 Score = 67.0 bits (162), Expect = 1e-09 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 8/208 (3%) Frame = +2 Query: 474575 LREVSLAVPRGQVVGLIGPSGAGKSTLIRCINRLVAPSGGRILLGDVDLAAVGRAELRRQ 474754 + +++L + R V +IG SG GKST + +++L I L +D + R + Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLD---INRYDHLSI 555 Query: 474755 RRRIGMIFQEYALVERLTVMENVLSGRLGYVPFWRSFTRRFPGRDIENAYRLLDRVGLLA 474934 R+RI I E + + T+ EN+ G + F +IENA + + Sbjct: 556 RKRIVYI-DENPFLFKGTIKENLCMGEI------------FDQNEIENACIMSQCHEFIC 602 Query: 474935 HADKR--------ADALSGGQRQRVGIARALAQEPALLLVDEPTASLDPKTSRQIMRLIL 475090 + DK+ LS GQ+QR+ +ARA+ +P +L++DE +++DP + +LI Sbjct: 603 NLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNT----KLIY 658 Query: 475091 EVCEERDLPAIVNIHDVPLAQQFMHRLV 475174 E D I+ H+ P ++ +LV Sbjct: 659 ETLHRMDCLIILITHNDPSNFKYNKKLV 686 Score = 63.9 bits (154), Expect = 1e-08 Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 7/213 (3%) Frame = +1 Query: 491659 HIIKDVDLTIGDGEFVVFVGPSGCGKSTLLRLVAGLESISGGELKIGETLVN---DLPPR 491829 +I++D++L + + V+ +G SG GKST + ++ L + + + +N L R Sbjct: 497 YIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIR 556 Query: 491830 ERGVGMVFQSYALYPHMTVFENMAFG--LKLAKTTKQAVRDRVHETARIL--QLEELLDR 491997 +R V + ++ L+ T+ EN+ G + + + HE L Q L Sbjct: 557 KRIV-YIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSE 614 Query: 491998 KPKALSGGQRQRVAMGRAMAREPRILLFDEPLSNLDASLRVQMRNEIARLHHRLGSTVIY 492177 LS GQ+QR+A+ RA+ +P++L+ DE LSN+D I HR+ +I Sbjct: 615 NGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDP----DNTKLIYETLHRMDCLIIL 670 Query: 492178 VTHDQVEAMTLADQIVVLNGGRIEQVGSPQELY 492276 +TH+ ++V N IE S + Y Sbjct: 671 ITHNDPSNFKYNKKLVFRNNRIIESSYSENKEY 703 Score = 62.0 bits (149), Expect = 5e-08 Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 22/183 (12%) Frame = +3 Query: 403311 VLENVHLTLERGEIVTIVGPNGSGKTTLLKSIIGAL-TPQRGC----------------- 403436 ++E+++L L+R + V I+G +G+GK+T KS+ P + Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 403437 ----IDKSPGMVIGYVPQRLHLDATLPMTVSRLMRLPRRRPTHEIETALDRAGVTQQASS 403604 ID++P + G + + L + + + HE LD+ + + S Sbjct: 558 RIVYIDENPFLFKGTIKENLCMGEIFDQ--NEIENACIMSQCHEFICNLDKQ-YSYKLSE 614 Query: 403605 QVSDLSGGQFQRVLLARALLSSPDLLILDEATQGLDQQGMADFYRQIERVRHELGCAVLM 403784 S+LS GQ QR+ LARA+L P +LILDE+ +D Y + H + C +++ Sbjct: 615 NGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETL----HRMDCLIIL 670 Query: 403785 VSH 403793 ++H Sbjct: 671 ITH 673 Score = 46.2 bits (108), Expect = 0.003 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 11/174 (6%) Frame = -1 Query: 89035 VMGPSGVGKSTLLAFIAGFLSPAFQAQGRVL----LEETRIDTLPAEQRHVGLLFQDPLL 88868 ++G SG GKST A LS ++ + + L+ R D L +R V + ++P L Sbjct: 514 IIGESGTGKSTF----AKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIV-YIDENPFL 568 Query: 88867 FPHLDVAGNLAFGMVREGTRRQRR---ARIHDALSSVGLEAF--AGRDPATLSGGQKARV 88703 F + NL G + + + ++ H+ + ++ + + + LS GQK R+ Sbjct: 569 FKGT-IKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRL 627 Query: 88702 ALLRVLLSQPRAILLDEPFSKLDAARRDEIRHWVFARVRDHRLPTL--MVTHDE 88547 AL R +L QP+ ++LDE S +D I + HR+ L ++TH++ Sbjct: 628 ALARAILHQPQVLILDESLSNIDPDNTKLIYETL------HRMDCLIILITHND 675 Score = 45.4 bits (106), Expect = 0.004 Identities = 27/88 (30%), Positives = 46/88 (52%) Frame = -1 Query: 367345 AHKRDSYPNTLSGGQKQRVAIARALAMQPTVMLFDEPTSALDPELVGEVLAVIKDLSAEG 367166 ++K + LS GQKQR+A+ARA+ QP V++ DE S +DP+ + + L Sbjct: 609 SYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPD---NTKLIYETLHRMD 665 Query: 367165 YTMIMVTHEMAFARAVSDQVVFLEKGLI 367082 +I++TH + ++VF +I Sbjct: 666 CLIILITHNDPSNFKYNKKLVFRNNRII 693 Score = 41.6 bits (96), Expect = 0.063 Identities = 38/188 (20%), Positives = 87/188 (46%), Gaps = 5/188 (2%) Frame = -3 Query: 169247 HVMQDIDLEITPGEVVVIIGASGSGKSTFIRCVNGLEEFQSGRIIVDGNELTPYGKGGKS 169068 ++++DI+L + + V+IIG SG+GKSTF + ++ L + I ++G ++ Y Sbjct: 497 YIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDH---- 552 Query: 169067 LQTIRTEVGMVFQQFNLFPHLSVRANVTLAPTRVRGLDDAQASKIADRLLERVGISDQAD 168888 +IR + + + LF +++ N+ + + ++ + + I + E + D+ Sbjct: 553 -LSIRKRIVYIDENPFLFKG-TIKENLCMG--EIFDQNEIENACIMSQCHEFICNLDKQY 608 Query: 168887 KYP-----GQLSGGXXXXXXXXXXXAMEPRLMLFDEPTSALDPEMIGEVLDAMRELASEG 168723 Y LS G +P++++ DE S +DP+ + + + + Sbjct: 609 SYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM---D 665 Query: 168722 MTMMIVTH 168699 ++++TH Sbjct: 666 CLIILITH 673 Score = 41.6 bits (96), Expect = 0.063 Identities = 22/60 (36%), Positives = 35/60 (58%) Frame = -3 Query: 396392 LSGGQQQRVGIARALAVRPRVLFMDEPFSALDALTRQRLQSELTELRQRSDAAIVFVTHD 396213 LS GQ+QR+ +ARA+ +P+VL +DE S +D + + L R D I+ +TH+ Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETL----HRMDCLIILITHN 674 Score = 41.2 bits (95), Expect = 0.083 Identities = 18/59 (30%), Positives = 35/59 (59%) Frame = -1 Query: 441058 LSGGQRQRALLGRTLMQEAELLLLDEPFANVDTHTVEILCDTLRDIANQGATVIVVLHD 440882 LS GQ+QR L R ++ + ++L+LDE +N+D +++ +TL +I++ H+ Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLH---RMDCLIILITHN 674 Score = 40.0 bits (92), Expect = 0.18 Identities = 26/92 (28%), Positives = 44/92 (47%) Frame = +3 Query: 430452 RLKQHPHELSGGMRQRVMIAMAMVCHPKVLIADEPTTALDVTIQAQILELMRELQREFDT 430631 +L ++ LS G +QR+ +A A++ P+VLI DE + +D +L+ E D Sbjct: 611 KLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNID----PDNTKLIYETLHRMDC 666 Query: 430632 ALLMITHDMGXXXXXXXXXXXXNRGIVEESAS 430727 +++ITH+ N I+E S S Sbjct: 667 LIILITHNDPSNFKYNKKLVFRNNRIIESSYS 698 >ref|YP_164394.1|DEAD box family helicase Length = 526 Score = 81.6 bits (200), Expect = 6e-14 Identities = 96/406 (23%), Positives = 167/406 (41%), Gaps = 8/406 (1%) Frame = -3 Query: 302567 LRDCQLHAITNLEQSLGENRPRALIQMATGAGKTFTAITSIYRLLKFSQAKRVLFLVDTK 302388 LRD Q A +++ + + L+ + TG GKT I +K + +RVL L Sbjct: 3 LRDYQQDARESIQAEWDKGNRKTLLVLPTGCGKTIVFSKVIEDRVK--KGERVLVLAHRG 60 Query: 302387 NLGEQAEGEFHQYIPQDDNRKFTELYTV-RRLTSSHIPDDAQVIICTIQRLYSILKGEPL 302211 L EQA D K T L T + + + +V++ ++Q L Sbjct: 61 ELLEQAA---------DKLEKSTGLKTATEKAEQTSLGSWFRVVVGSVQTL--------- 102 Query: 302210 DEATEETVPDGAAILRKPPLPVIYNARIPPEFFEFMVIDECHRSIYNLWRQVLEYFDSF- 302034 +R+ L + P +FF+ ++IDE H + + +++VL+YFDS Sbjct: 103 --------------MREKRL-----MQFPKDFFDTIIIDEAHHCVSDSYQRVLQYFDSAN 143 Query: 302033 LIGLTATPDN---RTYGFFQQNVVSEYTLEQSVADGVNVDHRVWRIDTEITQAGGRLEAE 301863 ++G+TATPD R G + +++ EYTL +++ +G + I E+ +G +A Sbjct: 144 VLGVTATPDRSDMRNLGSYFESLAFEYTLPKAIKEGYLSPIKALTIPLELDLSGVGQQAG 203 Query: 301862 ELVEKRERLSRKKRWEQLDQEIDYQGTQLDRSVVNPSQIRTVIQAFRDGLPQMFPDRVDD 301683 D+ QL S + +++ D + ++ DR Sbjct: 204 ----------------------DFAAGQLG------SALDPYLESIADEMAKVAKDR--- 232 Query: 301682 DGAFQVPKTLIF---AKTDSHADDIIRIVREEFGEGNEFCKKITYRIDEDPKSVLASFRN 301512 KT++F KT +++ + E N K D +L F N Sbjct: 233 -------KTVVFLPLVKTSQKFTELLNKKGFKAAEVNGDSK--------DRAEILEDFDN 277 Query: 301511 DYHPRIAVTVDMIATGTDVKPLECLLFMRDVKSRNYYMQMVGRGTR 301374 D + + ++ G D ++C++ +R K R+ Y QMVGRGTR Sbjct: 278 DKY-NVLCNSMLLTEGWDCPSVDCVVVLRPTKVRSLYSQMVGRGTR 322 Score = 47.4 bits (111), Expect = 0.001 Identities = 69/297 (23%), Positives = 118/297 (39%), Gaps = 31/297 (10%) Frame = -3 Query: 47180 TGSGKTAAFGLGVLAKLEVKAFRVQALVLCPTRELADQVAGEVRRLARGLGNVKVLTLCG 47001 TG GKT F + +++ K RV LVL EL +Q A ++ + + GL Sbjct: 31 TGCGKTIVFSKVIEDRVK-KGERV--LVLAHRGELLEQAADKLEK-STGLKT-------- 78 Query: 47000 GAPLKPQRDSLEHGAHVVVGTPGRIEEHLRKGSLTLGALTTLVLDEADRMLDMGFQAAIE 46821 A K ++ SL VVVG+ + R T+++DEA + +Q ++ Sbjct: 79 -ATEKAEQTSLGSWFRVVVGSVQTLMREKRLMQFPKDFFDTIIIDEAHHCVSDSYQRVLQ 137 Query: 46820 -----TIVGQTPTSR-----------QTLLFSATYGEGIR-----PVAERLMREPLAVEV 46704 ++G T T ++L F T + I+ P+ + + PL +++ Sbjct: 138 YFDSANVLGVTATPDRSDMRNLGSYFESLAFEYTLPKAIKEGYLSPI--KALTIPLELDL 195 Query: 46703 ASTHDD----------TSIRQHFFRVADXXXXXXXXXXXXLSHRPESSVVFCNTKRETQQ 46554 + +++ + +AD + +VVF + +Q+ Sbjct: 196 SGVGQQAGDFAAGQLGSALDPYLESIADEMAKVA---------KDRKTVVFLPLVKTSQK 246 Query: 46553 VAEALNAAGFSALALNGDLEQPDRDRILAMFANKSVSVLVATDVAARGLDIDALDAV 46383 E LN GF A +NGD DR IL F N +VL + + G D ++D V Sbjct: 247 FTELLNKKGFKAAEVNGD--SKDRAEILEDFDNDKYNVLCNSMLLTEGWDCPSVDCV 301 >ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family Length = 92 Score = 80.9 bits (198), Expect = 9e-14 Identities = 39/81 (48%), Positives = 54/81 (66%) Frame = -3 Query: 119066 MRKPELAAAIAERADLSKDKASQVLNVILDEITGTVSKGQDVSLIGFGAFTVRERAARTG 118887 M K EL A +AE+ +SK + + + + D I+ + G+ VS+ GFG F VRERAAR G Sbjct: 1 MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60 Query: 118886 KNPQTGKPLTIPASKTVAFKP 118824 +NPQTG+ + IPA+K AFKP Sbjct: 61 RNPQTGEEIDIPATKAPAFKP 81 >ref|YP_024677.1|gp04 Length = 90 Score = 71.6 bits (174), Expect = 6e-11 Identities = 36/82 (43%), Positives = 50/82 (60%) Frame = -3 Query: 119066 MRKPELAAAIAERADLSKDKASQVLNVILDEITGTVSKGQDVSLIGFGAFTVRERAARTG 118887 M K +L +A ++K + L +L+ IT ++ KG V+L GFG F+V RAARTG Sbjct: 1 MNKSDLINHVAAETGMTKTDSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTG 60 Query: 118886 KNPQTGKPLTIPASKTVAFKPG 118821 +NP TG+ + IPASK FK G Sbjct: 61 RNPATGEEIKIPASKAPKFKAG 82 >ref|NP_046923.1|gp28 Length = 387 Score = 68.9 bits (167), Expect = 4e-10 Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 18/228 (7%) Frame = -1 Query: 165370 IIALTNQKGGVGKTTTAVNLAACLAALDKRVLLVD-LDPQGHATMGSGI--DKH-ELDGS 165203 ++++ + KGGV KT++AV+ A LA RVLLV+ DPQG A+M G D H D + Sbjct: 108 VLSVMSHKGGVYKTSSAVHQAQWLALQGHRVLLVEGNDPQGTASMYHGYVPDLHIHADDT 167 Query: 165202 VLEVLLEGRRASEVILDCPDA--GYALLPGNGDLTAAEVDLLDRDGRERC-------LGE 165050 +L L R +E + P G ++P L E DL+ + L Sbjct: 168 LLPFYLGKRDNAEYAIK-PTCWPGLDIIPSCLALHRIETDLMQYHSEGKLPHPPHLMLRA 226 Query: 165049 ALGSVAASYDVVIIDCPPSLNMLTVNALTAADGVLIPLQCEFY----ALEGLSALLDTVE 164882 A+ SV +YD+++ID P+L T+N + AAD +++ E + L+ + LLD +E Sbjct: 227 AIESVWDNYDIIVIDSAPNLGTGTINVVCAADVIVVATPAELFDYASVLQFFTMLLDLLE 286 Query: 164881 QIQASVNPSLEVFGIVRTMYDARN-SLTRDVSKQLSQYFGDTLLKATI 164741 + + V ++ T Y N + +R + +Q+ +G +L+ + Sbjct: 287 TV--DLGGFEPVVRLLLTKYSLTNGNQSRWMEEQIRNTWGAMVLRQVV 332 >ref|NP_943827.1|gp49 Length = 429 Score = 67.4 bits (163), Expect = 1e-09 Identities = 43/119 (36%), Positives = 58/119 (48%), Gaps = 10/119 (8%) Frame = -1 Query: 245815 TGYGNGDGVDRNGILIGAASGTPVSAVHAGRVVFADWMRGFGNLVIIDH---GDNIMTLY 245645 +G+G G G+ A GTP+ A G V + GFG ++IDH T+Y Sbjct: 10 SGFGPRWGSQHRGLDFAAKDGTPIYAAQGGTVAYIGRADGFGQWIVIDHPAADGGGTTVY 69 Query: 245644 AHL-QRFAVGV--GEQVERGATIAAVGDSGGRDTPALYFEVR----ENGDPIDPGDWIA 245489 H+ FA G+ G++VE G IA VG +G P L+FEV G IDP W+A Sbjct: 70 GHMWDAFATGLRQGQRVEAGQLIAYVGTNGQSTGPHLHFEVHPTVWRQGSQIDPKPWLA 128 >ref|YP_006605.1|Gp25 Length = 387 Score = 67.4 bits (163), Expect = 1e-09 Identities = 67/241 (27%), Positives = 114/241 (47%), Gaps = 18/241 (7%) Frame = -1 Query: 165370 IIALTNQKGGVGKTTTAVNLAACLAALDKRVLLVD-LDPQGHATMGSGI--DKH-ELDGS 165203 ++A+ + KGGV KT++AV+ A LA RVLL++ DPQG A+M G D H D + Sbjct: 108 VLAVMSHKGGVYKTSSAVHEAQWLALQGHRVLLIEGNDPQGTASMYHGYVPDLHIHADDT 167 Query: 165202 VLEVLLEGRRASEVILDCPDA--GYALLPGNGDLTAAEVDLLDRDGRERC-------LGE 165050 +L L R +E + P G ++P L E DL+ + + L Sbjct: 168 LLPFYLGERDNAEYAIK-PTCWPGLDIIPSCLALHRIETDLMQYHAQGKLPHPPHLMLRA 226 Query: 165049 ALGSVAASYDVVIIDCPPSLNMLTVNALTAADGVLIPLQCEFY----ALEGLSALLDTVE 164882 A+ SV +YD+++ID P+L T+N + AAD +++ E + L+ + LLD ++ Sbjct: 227 AIESVWDNYDIIVIDSAPNLGTGTINVVCAADIIVVATPAELFDYSSVLQFFTMLLDLLK 286 Query: 164881 QIQ-ASVNPSLEVFGIVRTMYDARNSLTRDVSKQLSQYFGDTLLKATIPRNVRVAEAPSH 164705 + P +VR + + T + S+ + + +T + + VRV + Sbjct: 287 TVDLGGFEP------VVRLLLTKYSLTTGNQSRWMEEQIRNTWGSMVLRQVVRVTDEVGK 340 Query: 164704 G 164702 G Sbjct: 341 G 341 >ref|NP_695158.1|minor capsid protein Length = 1608 Score = 66.6 bits (161), Expect = 2e-09 Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Frame = -1 Query: 245815 TGYGNGDGVDRNGILIGAASGTPVSAVHAGRVVFADWMRGFGNLVII-DHGDNIMTLYAH 245639 +GYG G GI A GTP+ A + G VV A GFGN V+I G ++ T+Y H Sbjct: 1247 SGYGPRAGGFHKGIDFAAPLGTPIPAQYGGTVVQAGPASGFGNWVVIKPSGASVDTIYGH 1306 Query: 245638 LQRFAVGVGEQVERGATIAAVGDSGGRDTPALYFEVR 245528 ++R V G+ V+ G IA VG G P +++E+R Sbjct: 1307 MKRMKVKTGQHVKAGQIIAWVGSEGQSSGPHVHYELR 1343 >ref|NP_758949.1|ORF58 Length = 210 Score = 65.1 bits (157), Expect = 5e-09 Identities = 68/225 (30%), Positives = 100/225 (44%), Gaps = 1/225 (0%) Frame = -1 Query: 165388 ESIVTKIIALTNQKGGVGKTTTAVNLAACLAALDKRVLLVDLDPQGHATMGSGIDKHELD 165209 E+ + K+IA+ NQKGG GKTT + N+A+ L A +VLLVDLDPQG AT S Sbjct: 16 ENEMAKLIAILNQKGGAGKTTISTNVASQLHADGHKVLLVDLDPQGSATDWS-------- 67 Query: 165208 GSVLEVLLEGRRASEVILDCPDAGYALLPGNGDLTAAEVDLLDRDGRERCLGEALGSVAA 165029 E EG A VI R G+ C + + VA+ Sbjct: 68 ----EQAEEGSEAVPVI--------------------------RMGK-TCTCD-IHKVAS 95 Query: 165028 SYD-VVIIDCPPSLNMLTVNALTAADGVLIPLQCEFYALEGLSALLDTVEQIQASVNPSL 164852 Y+ +V +D P + L A+ AAD VLIP Q Y + L++ V+ Q V + Sbjct: 96 GYEYLVSVDGAPQVADLAATAVRAADMVLIPTQPSPYDCWSAAELVEIVKARQ-EVTDGI 154 Query: 164851 EVFGIVRTMYDARNSLTRDVSKQLSQYFGDTLLKATIPRNVRVAE 164717 + + R L ++ K+ Y+ +LK + VR+ + Sbjct: 155 PKAAFIISRAIKRTKLEAEI-KEALDYYELPILKNGTTQRVRLCK 198 >ref|NP_892074.1|partitioning protein SpyA Length = 389 Score = 65.1 bits (157), Expect = 5e-09 Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 17/227 (7%) Frame = -1 Query: 165370 IIALTNQKGGVGKTTTAVNLAACLAALDKRVLLVDL-DPQGHATMGSGI--DKHELDGSV 165200 ++A+ KGG KT+T+V+ A LA RVLL+D DPQ A++ G D H + Sbjct: 108 VLAIAAHKGGAYKTSTSVHTAQWLALQGLRVLLIDATDPQATASLYHGYVPDLHIHEDET 167 Query: 165199 LEVLLEGRRASEVILDCPDA--GYALLPGNGDLTAAEVDLLDRDGRERC-------LGEA 165047 L G R + P ++P + E +L E+ L A Sbjct: 168 LLPYYLGERDDAMYAIKPTCWPNLDIIPSCLAIHRIESELYPLHDAEKLPVAPHMMLRAA 227 Query: 165046 LGSVAASYDVVIIDCPPSLNMLTVNALTAADGVLIPLQCEFYALEGLSALLDTVEQIQAS 164867 + SV SYDVV++D P+L + T+N + AAD +++P E Y + + A Sbjct: 228 IESVWDSYDVVVLDSAPNLGIGTINVVCAADVIVVPTPAELYDYVSTLQFFTMLRDLMAG 287 Query: 164866 VN-----PSLEVFGIVRTMYDARNSLTRDVSKQLSQYFGDTLLKATI 164741 V+ P + V ++ +A S ++ + + +G +LK + Sbjct: 288 VDLGGFEPDVRV--LITKFSNAVGSQSQWMDDHIRDAWGSMVLKEVV 332 >ref|NP_612844.1|Gp15 protein Length = 983 Score = 64.3 bits (155), Expect = 9e-09 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Frame = -1 Query: 245794 GVDRNGILIGAASGTPVSAVHAGRVVFA-DWMRGFGNLVIIDHGDNIMTLYAHLQRFAVG 245618 G +GI G GTPV G V+ + +G + +DHG ++T+YAH V Sbjct: 875 GGKHDGIDFGTPIGTPVRVSKDGVVIKRRELTTSYGKYLFVDHGGGLITIYAHNSELLVN 934 Query: 245617 VGEQVERGATIAAVGDSGGRDTPALYFEVRENGDP 245513 G++V+RG IA G++G P L++E+R NG P Sbjct: 935 EGDRVKRGQIIAKTGNTGNSTGPHLHWELRVNGIP 969 >ref|NP_803812.1|ORF246 Length = 218 Score = 61.2 bits (147), Expect = 8e-08 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 3/166 (1%) Frame = +2 Query: 99419 YAEQAHD--GQRRR-SGEPYVTHPLAVANILANMHMDHQSLMAAMLHDVIEDTGITKEAL 99589 YA AH GQ R SG+PY H L VA + + H + AA LHDVIEDT +T L Sbjct: 39 YAIAAHTAVGQLRDGSGKPYWHHLLQVAEMAQLFDLSHAAYKAAWLHDVIEDTAVTASDL 98 Query: 99590 ARQFGDPVAELVDGVSKLTQITFEDKAVAQAENFQKMVLAMSKDIRVIIVKLADRLHNMR 99769 + F PV L V++LT +T+E + + + +S + + KL D + NM Sbjct: 99 TKLFSIPVVNL---VTELTNVTYEGNRKTRISLQHERLSRISWSGQSL--KLLDSISNMW 153 Query: 99770 TLGALRPDKKRRIARETLEIYARIASRLGINTIRVELEDLSFQAIH 99907 ++ +PD E ++ ++ +N ++DL+ ++ Sbjct: 154 SIVNDKPDFAELYLTEKAQLISK------LNNCHPAIKDLAISVLY 193 >ref|NP_818239.1|gp188 Length = 318 Score = 59.7 bits (143), Expect = 2e-07 Identities = 64/243 (26%), Positives = 102/243 (41%), Gaps = 9/243 (3%) Frame = -1 Query: 372622 RVIECEGPEAIAAILLEPIPGTA--------GVLTPPPGYLRGVRELADEFGILLIFDEV 372467 RV+ EG A+ P + G L P L V + A + G ++ DE Sbjct: 86 RVLYAEGGRDAGAVAFTQFPNWSLVSLIDREGRLVAPEVVLDEV-DRATKSGRTVVADES 144 Query: 372466 MAGFGRTGRWFAFEHFDVTPDLIVFAKGVNSGYVPAGGVVVSDAISRHFDAHMFFGGLTY 372287 GFGR GR + + + TPD I+F G G + ++ + F M Sbjct: 145 ATGFGRLGRIWGHQAYGFTPDAIIFGGPAGGGLTLGGVIGPAELLDDAFVGPM------- 197 Query: 372286 SGHPLAMAAIVATLDAMREEGVVENAARIGDGVLGQGLERLAHRHA-IVGETRGLGVFHA 372110 +G PLA A ATL A+ E ++E+ G G+ L L R + +T G G++H Sbjct: 198 AGAPLACATGAATLAAINPE-LLEHVREEG-VTFGERLRALVDRFGDYLADTAGSGLYHT 255 Query: 372109 LELVSDRERRTPLAADAMNEIKHALLAEGMLPFVAGNRIHVVPPCIIGEDEVEQGLATLD 371930 L+ S + R ++ +H LL + G+ + V P I E E+ +G+ + Sbjct: 256 LDFRSPQLAR----KFEVSTRQHGLLTAPPV----GSTVVVTPTLIASERELARGVELIA 307 Query: 371929 KVL 371921 + L Sbjct: 308 ETL 310 Score = 45.1 bits (105), Expect = 0.006 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 5/95 (5%) Frame = -1 Query: 373129 DPLVIAGAEGCRMWDYAGKEYLDFSSQLVNTNIGHQHPKVIAAIKEQAETLATVAPAHAN 372950 DP+ I A+ ++D + LDF++ + IGH HP V+ AI+E + PA + Sbjct: 4 DPIAIQRADLHYVFDQYNTQLLDFTA--LQAPIGHNHPWVLTAIREHLDYYVRTGPASGH 61 Query: 372949 LARG--EAAKRI---LERAPRGFSKVFFTNAGADA 372860 +AR E A+++ LER +V + G DA Sbjct: 62 VARWPVEYARKLIDSLERPDADSLRVLYAEGGRDA 96 >ref|NP_705641.1|gp15 Length = 193 Score = 58.9 bits (141), Expect = 4e-07 Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Frame = +1 Query: 194026 HLIDATSFAMAQQDVRYYLNGMLLEFG-HHLVRTVATDGHRLAVCARSADVEVEPS-QKL 194199 H + A A+QD+RYYLNG+LLE + + VATDGHR + + P L Sbjct: 7 HKLKAALTHAAKQDIRYYLNGILLEAAVNGDLHIVATDGHRAFIGRIAGGATSWPEFTSL 66 Query: 194200 IVPRKGILELARLLDGSDEPVELTIGGTHLRAQTGDFTFTSKLVDGKFPDYDRVIPRG 194373 I+P I A+ D +T+ R G F + +DG+FPD+ R++PRG Sbjct: 67 IIPTDAIKVAAKKGD-------VTVAPAGARYALGSTLFDA--IDGRFPDWRRIVPRG 115 >ref|NP_958120.1|gp15 Length = 193 Score = 58.9 bits (141), Expect = 4e-07 Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Frame = +1 Query: 194026 HLIDATSFAMAQQDVRYYLNGMLLEFG-HHLVRTVATDGHRLAVCARSADVEVEPS-QKL 194199 H + A A+QD+RYYLNG+LLE + + VATDGHR + + P L Sbjct: 7 HKLKAALTHAAKQDIRYYLNGILLEAAVNGDLHIVATDGHRAFIGRIAGGATSWPEFTSL 66 Query: 194200 IVPRKGILELARLLDGSDEPVELTIGGTHLRAQTGDFTFTSKLVDGKFPDYDRVIPRG 194373 I+P I A+ D +T+ R G F + +DG+FPD+ R++PRG Sbjct: 67 IIPTDAIKVAAKKGD-------VTVAPAGARYALGSTLFDA--IDGRFPDWRRIVPRG 115 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 56.2 bits (134), Expect = 2e-06 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Frame = -1 Query: 245779 GILIGAASGTPVSAVHAGRVVFADWMRGFGNLVIIDHGDNIMTLYAH-LQRFAVGVGEQV 245603 G A +GT + ++ +G+V A + + GN V+I D + Y H L +V G+ V Sbjct: 1582 GTDFAAKAGTAIKSLQSGKVQIAGYSKTAGNWVVIKQDDGTVAKYMHMLNTPSVKAGQSV 1641 Query: 245602 ERGATIAAVGDSGGRDTPALYFEVRENGDPIDP 245504 + G TI VG +G L+ ++ +NG IDP Sbjct: 1642 KAGQTIGKVGSTGNSTGNHLHLQIEQNGKTIDP 1674 >ref|NP_050160.1|hypothetical protein Length = 1487 Score = 55.8 bits (133), Expect = 3e-06 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Frame = -3 Query: 399056 LILASAKQALGTPYQWGGNSLESGVDCSGLVQMSYAAAGIQ-VPRTSNQQYQALDHRDRA 398880 L+ A K G PY WG +S DCSGLV+ S ++ P S QY Sbjct: 1092 LLGAVEKYGKGKPYVWGSEGPDS-FDCSGLVKYSLERQSVKSFPHYSGDQYAMSRGVKDP 1150 Query: 398879 RPGDLLFFGAGGRATHVGIYLGDRRM--IHAPGSG 398781 + GDL+FFG GGR HVG+Y G+ ++ +P SG Sbjct: 1151 QIGDLVFFGPGGR-NHVGVYAGNGKVWSARSPRSG 1184 >ref|NP_803396.1|tail length tape measure protein Length = 1550 Score = 55.5 bits (132), Expect = 4e-06 Identities = 35/97 (36%), Positives = 49/97 (50%) Frame = -1 Query: 245698 GFGNLVIIDHGDNIMTLYAHLQRFAVGVGEQVERGATIAAVGDSGGRDTPALYFEVRENG 245519 G+G V I G + +YAHL ++ V G+QV G T+ G++G P L++E+R NG Sbjct: 1218 GYGKWVKIVKGA-LEVIYAHLSKYKVKTGQQVRVGQTVGISGNTGFSTGPHLHYEMRWNG 1276 Query: 245518 DPIDPGDWIARR*DARCVTPAGWIAPTHKGYAGARRA 245408 DP W+ + TP G G A ARRA Sbjct: 1277 RHRDPLPWLRKNNGGGKSTPGG------NGAANARRA 1307 >ref|YP_006528.1|ParA Length = 398 Score = 54.7 bits (130), Expect = 7e-06 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 24/169 (14%) Frame = -1 Query: 165370 IIALTNQKGGVGKTTTAVNLAACLAAL------DKRVLLVDLDPQGHATMGSGIDKHEL- 165212 +I ++N KGGV KT + V+LA + A D R+L++DLDPQ ATM KH + Sbjct: 110 VIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLS-HKHSIG 168 Query: 165211 --DGSVLEVLLEGRRASEVILDCPDAGYALLPGNGDLTAAEVD--LLDRDGRERC----- 165059 + + + +L+ E++ + +++PG D+ A +D + D RE C Sbjct: 169 IVNATSAQAMLQNVSREELLEEF--IVPSVVPG-VDVMPASIDDAFIASDWRELCNEHLP 225 Query: 165058 --------LGEALGSVAASYDVVIIDCPPSLNMLTVNALTAADGVLIPL 164936 + + + YD +++D P L+ NAL +A+ + PL Sbjct: 226 GQNIHAVLKENVIDKLKSDYDFILVDSGPHLDAFLKNALASANILFTPL 274 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 54.3 bits (129), Expect = 9e-06 Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 3/126 (2%) Frame = +3 Query: 352386 VSLASG-RQAFCDMGSGIPVVLLHGISSGARSWAPLMHQAT--GVRWLAWDAPGYGESSA 352556 + LA G R +G+G P+V LHG+S A+++ ++ + G R +A DA +G S + Sbjct: 6 IVLADGFRVGVSTVGTGAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGS 65 Query: 352557 LAEPHPTARDYXXXXXXXXXXXXXXXXXXIGHSLGALIASAYARDFPDRVSGLLLADPAQ 352736 L H T D GHS+G + A P RV+ +L D A Sbjct: 66 LPTGH-TVEDMTRVTLKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDAAA 124 Query: 352737 GYRHAD 352754 G H D Sbjct: 125 GQEHHD 130 Score = 50.8 bits (120), Expect = 1e-04 Identities = 32/111 (28%), Positives = 47/111 (42%) Frame = +3 Query: 321621 GGRLHYVEAGSGPPLVLIHGLGGQLQHFTYAVIEALRDDYRVIAFDRPGSGYSDTTDNER 321800 G R+ G+G PLV +HGL + + + +RVIA D G S + Sbjct: 11 GFRVGVSTVGTGAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTGH 70 Query: 321801 ARLPCQARAVHEAWRALGVERPLLVGHSMGGTLALTLALEFPDDVAGLALL 321953 + R + L + R + GHSMGG + + +A P VA LL Sbjct: 71 T-VEDMTRVTLKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLL 120 Score = 43.5 bits (101), Expect = 0.017 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Frame = +2 Query: 393992 VLLLHGFAASSYMWRDVIEALAD-GYHVIAPDLPAFGYTEAPARGQYDYTFANLTKTIER 394168 ++ LHG + S+ + +++ LA+ G+ VIA D G + + G +T ++T+ + Sbjct: 25 LVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTG---HTVEDMTRVTLK 81 Query: 394169 FTDQLKLTRYAMAVHDYGAPVGWRLALAHPSRITAIISQNGNAYEE 394306 D+L + R A H G + +A HP R+ A + + A +E Sbjct: 82 TLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDAAAGQE 127 >ref|NP_817650.1|gp61 Length = 274 Score = 53.9 bits (128), Expect = 1e-05 Identities = 34/111 (30%), Positives = 53/111 (47%) Frame = +3 Query: 321621 GGRLHYVEAGSGPPLVLIHGLGGQLQHFTYAVIEALRDDYRVIAFDRPGSGYSDTTDNER 321800 G R+ + G+G PLV +HGL + +IE + + V A D G +D+ Sbjct: 13 GFRVGVSQVGTGVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFGH 72 Query: 321801 ARLPCQARAVHEAWRALGVERPLLVGHSMGGTLALTLALEFPDDVAGLALL 321953 + R A ALG+++ + VGHSMGG + +A +P+ V LL Sbjct: 73 T-VEEMTRVTLRALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILL 122 Score = 48.1 bits (113), Expect = 7e-04 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 2/117 (1%) Frame = +3 Query: 352404 RQAFCDMGSGIPVVLLHGISSGARSWAPLMHQAT--GVRWLAWDAPGYGESSALAEPHPT 352577 R +G+G+P+V LHG++ A ++ L+ + G A DA +G + +L H T Sbjct: 15 RVGVSQVGTGVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFGH-T 73 Query: 352578 ARDYXXXXXXXXXXXXXXXXXXIGHSLGALIASAYARDFPDRVSGLLLADPAQGYRH 352748 + +GHS+G + + A +P+RV +L D A G H Sbjct: 74 VEEMTRVTLRALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILLDAAAGKEH 130 >ref|NP_663686.1|structural protein Length = 908 Score = 53.9 bits (128), Expect = 1e-05 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Frame = -1 Query: 245773 LIGAASGTPVSAVHAGRVVFA-----DWMRGFGNLVIIDHGDNIMTLYAHLQRFAVGVGE 245609 L+ TP+ A + G+VV A DW +GN +I H D + T YAH R V VG+ Sbjct: 805 LVNGNPTTPILASNDGQVVQAGSNYYDW---YGNYTVIKHADGLYTGYAHQSRIDVSVGQ 861 Query: 245608 QVERGATIAAVGDSGGRDTPALYFE 245534 V++G I +G +G P L+F+ Sbjct: 862 NVKKGQQIGLMGATGPVTGPHLHFQ 886 >ref|NP_108727.1|minor structural protein 3 Length = 906 Score = 53.9 bits (128), Expect = 1e-05 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Frame = -1 Query: 245773 LIGAASGTPVSAVHAGRVVFA--DWMRGFGNLVIIDHGDNIMTLYAHLQRFAVGVGEQVE 245600 L+ TP+ A + G+VV A ++ +GN +I H D + T YAH R V VG+ V+ Sbjct: 803 LVNGNPTTPILASNDGQVVQAGSNYYNWYGNYTVIKHADGLYTGYAHQSRIDVSVGQNVK 862 Query: 245599 RGATIAAVGDSGGRDTPALYFE 245534 +G I +G +G P L+F+ Sbjct: 863 KGQQIGLMGATGPVTGPHLHFQ 884 >ref|NP_116510.1|unknown Length = 1904 Score = 53.1 bits (126), Expect = 2e-05 Identities = 115/501 (22%), Positives = 173/501 (34%), Gaps = 24/501 (4%) Frame = -1 Query: 267007 TLTLYANGEAIGTTTANGQGEWTFTTDDLDDGDYTFTATATDSAGNVSGVSDGYALTVDT 266828 T T+ G GTT N WT T + +G+Y +T T N S A+ Sbjct: 1104 TTTITYAGSTSGTTPPNNG--WTSTVPTVAEGNYLWTKTVWTYTDNTSETGYSVAMMGVK 1161 Query: 266827 SAPGSPTLDPSDGSILIGTAEPGSAITLTDGDGNAIGQTTTDANGNWSFQPDAPLVDGTE 266648 G P + ++G + G I T A TT G WS P+ G+ Sbjct: 1162 GDKGDPGNNGTNGI----AGKDGKGIKATAITYQASPNGTTAPTGTWSASV-PPVAKGSF 1216 Query: 266647 VNATATDAAGNVSEPGTLTVDGDLNDTTPPATPTITMGSDDTAPQTGDLDSGDSTNDTTP 266468 + T T+ ++TT MG+ +G++ +D P Sbjct: 1217 L--------------WTRTIWTYTDNTTETGYAVAYMGT-----------NGNNGHDGFP 1251 Query: 266467 TLSGQAEARSIVTIYSGETELGTTIANAAGEWSFTPEALDDGDYDFTVTATGSTGNVSDA 266288 G + +T Y+G T GTT N W+ T + +G+Y +T T T N S+ Sbjct: 1252 GKDGTGIKTTTIT-YAGSTS-GTTPPN--NGWTSTVPTVAEGNYLWTKTVWTYTDNTSET 1307 Query: 266287 SDPFTLTVDTQPPLAPEVNPTNGEI-LTGSAEPSSSVTLTDEQGGTITTVETDRNGNWSY 266111 + P N TNG G ++++T GT T G WS Sbjct: 1308 GYSVAMMGVKGDKGDPGNNGTNGIAGKDGKGIKATAITYQASPNGT-----TAPTGTWSA 1362 Query: 266110 APDTPLEDESTFTAVARDAAGNTSEPGNA-----TVDADLEDNLPPSDPVII--TSIDAT 265952 + + +T NT+E G A T + D P D I T+I Sbjct: 1363 SVPPVAKGSFLWTRTIWTYTDNTTETGYAVAYMGTNGNNGHDGFPGKDGTGIKTTTITYA 1422 Query: 265951 EPVTGNI-DNGGTTNDSNPTLQGTAEATNMVQVWADK--------AMLG--ETQADNFGN 265805 +G N G T+ +G T V + D AM+G + D N Sbjct: 1423 GSTSGTTPPNNGWTSTVPTVAEGNYLWTKTVWTYTDNTSETGYSVAMMGVKGDKGDPGNN 1482 Query: 265804 WSFRISARLLDGTTTFRATSTDPEGQISAPSNTYALNVDTTPPDEP-----TATVAEDGT 265640 + I+ + G T +AP+ T++ +V PP T T+ T Sbjct: 1483 GTNGIAGKDGKGIKATAITYQASPNGTTAPTGTWSASV---PPVAKGSFLWTRTI---WT 1536 Query: 265639 AVTGTAEPGSTVTVTDADGND 265577 T E G V +GN+ Sbjct: 1537 YTDNTTETGYAVAYMGTNGNN 1557 Score = 51.6 bits (122), Expect = 6e-05 Identities = 61/254 (24%), Positives = 95/254 (37%), Gaps = 2/254 (0%) Frame = -1 Query: 267007 TLTLYANGEAIGTTTANGQGEWTFTTDDLDDGDYTFTATATDSAGNVSGVSDGYALTVDT 266828 T T+ G GTT N WT T + +G+Y +T T N S A+ Sbjct: 1416 TTTITYAGSTSGTTPPNNG--WTSTVPTVAEGNYLWTKTVWTYTDNTSETGYSVAMMGVK 1473 Query: 266827 SAPGSPTLDPSDGSILIGTAEPGSAITLTDGDGNAIGQTTTDANGNWSFQPDAPLVDGTE 266648 G P + ++G + G I T A TT G WS P+ G+ Sbjct: 1474 GDKGDPGNNGTNGI----AGKDGKGIKATAITYQASPNGTTAPTGTWSASVP-PVAKGSF 1528 Query: 266647 V-NATATDAAGNVSEPG-TLTVDGDLNDTTPPATPTITMGSDDTAPQTGDLDSGDSTNDT 266474 + T N +E G + G + P G D T +T + ST+ T Sbjct: 1529 LWTRTIWTYTDNTTETGYAVAYMGTNGNNGHDGFP----GKDGTGIKTTTITYAGSTSGT 1584 Query: 266473 TPTLSGQAEARSIVTIYSGETELGTTIANAAGEWSFTPEALDDGDYDFTVTATGSTGNVS 266294 TP +G ++ T+ G T+ W++T + + G ++V G+TG Sbjct: 1585 TPPNNGWTS--TVPTVAEGNYLWTKTV------WAYTDNSFETG---YSVGKMGNTGPAG 1633 Query: 266293 DASDPFTLTVDTQP 266252 +P + DT+P Sbjct: 1634 SNGNPGKVVSDTEP 1647 Score = 43.9 bits (102), Expect = 0.013 Identities = 116/522 (22%), Positives = 174/522 (33%), Gaps = 29/522 (5%) Frame = -1 Query: 267055 DPSNGKT-ISGEAEPG--STLTLYANGEAIGTTTANGQGEWTFTTDDLDDGDYTFTATAT 266885 D +NG I+G+ G T YA G + T A+G W ++ G + +T T Sbjct: 930 DGNNGNDGIAGKDGVGIKKTTITYAVGTSGTTAPASG---WNSQVPNVPAGQFLWTKTVW 986 Query: 266884 DSAGNVSGVSDGYALTVDTSAPGSPTLDPSDGSILIGTAEPGSAITLTDGDGNAIGQTTT 266705 N S A+ G P + ++G + G I T A TT Sbjct: 987 TYTDNTSETGYSVAMMGVKGDKGDPGNNGTNGI----AGKDGKGIKATAITYQASPNGTT 1042 Query: 266704 DANGNWSFQPDAPLVDGTEV-NATATDAAGNVSEPG-TLTVDGDLNDTTPPATPTITMGS 266531 G WS P+ G+ + T N +E G + G + P G Sbjct: 1043 APTGTWSASVP-PVAKGSFLWTRTIWTYTDNTTETGYAVAYMGTNGNNGHDGFP----GK 1097 Query: 266530 DDTAPQTGDLDSGDSTNDTTPTLSGQAEARSIVTIYSGETELGTTIANAAGEWSFTPEAL 266351 D T +T + ST+ TTP +G W+ T + Sbjct: 1098 DGTGIKTTTITYAGSTSGTTPPNNG---------------------------WTSTVPTV 1130 Query: 266350 DDGDYDFTVTATGSTGNVSDASDPFTLTVDTQPPLAPEVNPTNGEI-LTGSAEPSSSVTL 266174 +G+Y +T T T N S+ + P N TNG G ++++T Sbjct: 1131 AEGNYLWTKTVWTYTDNTSETGYSVAMMGVKGDKGDPGNNGTNGIAGKDGKGIKATAITY 1190 Query: 266173 TDEQGGTITTVETDRNGNWSYAPDTPLEDESTFTAVARDAAGNTSEPGNA-----TVDAD 266009 GT T G WS + + +T NT+E G A T + Sbjct: 1191 QASPNGT-----TAPTGTWSASVPPVAKGSFLWTRTIWTYTDNTTETGYAVAYMGTNGNN 1245 Query: 266008 LEDNLPPSDPVII--TSIDATEPVTGNI-DNGGTTNDSNPTLQGTAEATNMVQVWADK-- 265844 D P D I T+I +G N G T+ +G T V + D Sbjct: 1246 GHDGFPGKDGTGIKTTTITYAGSTSGTTPPNNGWTSTVPTVAEGNYLWTKTVWTYTDNTS 1305 Query: 265843 ------AMLG--ETQADNFGNWSFRISARLLDGTTTFRATSTDPEGQISAPSNTYALNVD 265688 AM+G + D N + I+ + G T +AP+ T++ +V Sbjct: 1306 ETGYSVAMMGVKGDKGDPGNNGTNGIAGKDGKGIKATAITYQASPNGTTAPTGTWSASV- 1364 Query: 265687 TTPPDEP-----TATVAEDGTAVTGTAEPGSTVTVTDADGND 265577 PP T T+ T T E G V +GN+ Sbjct: 1365 --PPVAKGSFLWTRTI---WTYTDNTTETGYAVAYMGTNGNN 1401 >ref|NP_112710.1|ORF47 Length = 918 Score = 52.8 bits (125), Expect = 3e-05 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Frame = -1 Query: 245773 LIGAASGTPVSAVHAGRVVFA-----DWMRGFGNLVIIDHGDNIMTLYAHLQRFAVGVGE 245609 L+ TP+ A G+VV A DW +GN +I H D + T YAH R V VG+ Sbjct: 815 LVNGNPTTPILASGDGQVVQAGSNYYDW---YGNYTVIKHADGLYTGYAHQSRIDVSVGQ 871 Query: 245608 QVERGATIAAVGDSGGRDTPALYFE 245534 V++G I +G +G P L+F+ Sbjct: 872 NVKKGQQIGLMGATGPVTGPHLHFQ 896 >ref|NP_076626.1|endopeptidase Length = 894 Score = 52.8 bits (125), Expect = 3e-05 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Frame = -1 Query: 245773 LIGAASGTPVSAVHAGRVVFA-----DWMRGFGNLVIIDHGDNIMTLYAHLQRFAVGVGE 245609 L+ TP+ A G+VV A DW +GN +I H D + T YAH R V VG+ Sbjct: 791 LVNGNPTTPILASGDGQVVQAGSNYYDW---YGNYTVIKHADGLYTGYAHQSRIDVSVGQ 847 Query: 245608 QVERGATIAAVGDSGGRDTPALYFE 245534 V++G I +G +G P L+F+ Sbjct: 848 NVKKGQQIGLMGATGPVTGPHLHFQ 872 >ref|NP_932523.1|hypothetical protein Length = 155 Score = 52.8 bits (125), Expect = 3e-05 Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 6/147 (4%) Frame = +2 Query: 99410 AFYYAEQAHDGQRRRSGEPYVTHPLAVANILANMHMDHQSLMAAMLHDVIEDTGITKEAL 99589 A YA H GQ + G PY+ HPL + + + +LHDV+ED +E Sbjct: 11 AIQYATNRHAGQFDKGGAPYILHPLQLMHWARRDREALDVQILCVLHDVVEDCYDDREEG 70 Query: 99590 ARQ----FGDPVAELVDGVSKLTQITFEDKAVAQAENFQKMVLAMSKDIRVIIVKLADRL 99757 R FG +A+LVD V+K E+++ ++ ++ DIR + K D Sbjct: 71 LRDINTLFGSSMAQLVDNVTK-----------RDGESYECYLIRVNSDIRSVKCKRYDLR 119 Query: 99758 HN--MRTLGALRPDKKRRIARETLEIY 99832 +N +R L + P R + Y Sbjct: 120 NNADLRRLKGVTPKDTERAVKYMTAYY 146 >ref|NP_058454.1|orf 16 Length = 539 Score = 51.2 bits (121), Expect = 8e-05 Identities = 29/80 (36%), Positives = 43/80 (53%) Frame = -1 Query: 245698 GFGNLVIIDHGDNIMTLYAHLQRFAVGVGEQVERGATIAAVGDSGGRDTPALYFEVRENG 245519 G+G V I G + +YAHL ++ V G+QV G T+ G++G P L++E+R NG Sbjct: 443 GYGKWVKIVKGA-LEVIYAHLSKYKVKTGQQVRVGQTVGISGNTGFSTGPHLHYEMRWNG 501 Query: 245518 DPIDPGDWIARR*DARCVTP 245459 DP W+ + A V P Sbjct: 502 RHRDPLPWLRKNNGAAKVHP 521 >ref|NP_061640.1|phi PVL ORF 15 and 16 homologue Length = 1313 Score = 50.4 bits (119), Expect = 1e-04 Identities = 29/80 (36%), Positives = 42/80 (52%) Frame = -1 Query: 245698 GFGNLVIIDHGDNIMTLYAHLQRFAVGVGEQVERGATIAAVGDSGGRDTPALYFEVRENG 245519 G+G V I G + +YAHL ++ V G QV G T+ G++G P L++E+R NG Sbjct: 1217 GYGKWVKIVKGA-LEVIYAHLSKYKVKTGHQVRVGQTVGISGNTGFSTGPHLHYEMRWNG 1275 Query: 245518 DPIDPGDWIARR*DARCVTP 245459 DP W+ + A V P Sbjct: 1276 RHRDPLPWLRKNNGAAKVHP 1295 >ref|YP_195210.1|virion structural protein Length = 1177 Score = 50.1 bits (118), Expect = 2e-04 Identities = 145/684 (21%), Positives = 250/684 (36%), Gaps = 78/684 (11%) Frame = -1 Query: 264730 GDPLTIAGESITLNAD-GTFSYTADLTG-------LPDGNLTATLSIADDAGNTGTL--T 264581 GD L + G I L+ D G + G D LT S++D + + T Sbjct: 22 GDNLDLTGNGIALDGDVGLEGQSLHSNGSVVEWRFAGDVFLTGIQSVSDKIFSNCNISGT 81 Query: 264580 DTAILDTIVDAAPLATLTSND-----GDGLVSADEAGTASYT-VSGLXXXXXXXXXXXDI 264419 + A+ + D+ +++T N G + +AD T S+ V G Sbjct: 82 ENALSNIGNDSLENSSITINGTSIPLGGSVTTADTNTTYSFAAVDGTTDVRKTIRLTSGG 141 Query: 264418 NGDTATANVAADGTISVDLSGLA-DGEITSSLAITDTAGNTATVDGESVTLDTIADTAPL 264242 +G + +V +V L+ D +I+SS TDT + G + T I+ Sbjct: 142 SGTSTDQDVTLVAGTNVSLTRAGNDIQISSSFTDTDTITTLRSAVGGNATSGDISIAGSG 201 Query: 264241 ATLTSNDDDGL-ISADEAGMTSYT-VSGLDPDATAVATFTDVNGDSVTATIDTDGDYAVD 264068 +T S DGL I+ D + T + G + FT + GD VT + T D ++ Sbjct: 202 STTVSQSVDGLTITIDSTDTDTITRLRGGTGENFLAGDFTLIAGDEVTLS-QTGRDITIN 260 Query: 264067 -------LSGLADGEITSSLAITDGAGNT--------ATVTGDSVXXXXXXXXXXXXXXT 263933 L G A G S G+G T +T+T DS+ T Sbjct: 261 SVDTITRLKGGATGSFKSGDVTFTGSGATTVSQSQDGSTITIDSIDTNTITRIRGSNGGT 320 Query: 263932 SNDGD------GLVNVDEAGTA-SYTVSGLDDDAT---AVATFIDVNGDTAT----ANVA 263795 GD G+ V+++ + T+S D D T A++ + ++G + + N+ Sbjct: 321 LTSGDVTFLGSGVTTVEQSPDGRTITISSTDQDTTYDAALSGGLFLSGTSFSLKNNENIN 380 Query: 263794 ADGTISVDLSGLADGEITSSLVITDGA----GNTATVTGNSVXXXXXXXXXXXXXXTSND 263627 + D S ++T+S++ DG+ G VTG + Sbjct: 381 DQTIVKWDSSNF---QLTNSIITDDGSTVTIGGDLLVTGTTTTINTQNLVVADNNIELRR 437 Query: 263626 GDGLVNADEAGTTSYTVSGLXXXXXXXXXXXDINGDTATANVAADGTISVDLSGLADGEI 263447 G+ L ++ + T G +G DG++ L + D EI Sbjct: 438 GENLTGSNGGIQLNRTTDGTGLVTSFNAMQWFESGGYWR---TWDGSVPHRL--VTDDEI 492 Query: 263446 TS-------SLTITDTAGNTATVT-------GDSVTLDTLAPATPVINFSNATTISGTGD 263309 + S T+ + AT T G +V+ + I+F+N+ T + T Sbjct: 493 QTLTNKTLDSPTLNFPSLGAATATSINGLSFGSTVSASLSVGNSKAISFNNSVTFN-TAQ 551 Query: 263308 PGSNVTVTDSQGNIIGEPATVDENGNWSVTADDALDDGSEINAVATDAAG------NESD 263147 S +TV S G + + + A A +++ V +D+ G N++ Sbjct: 552 NDSTITVQLSNGGTVAYTS--------NTLAVFASTTSNQLRGVISDSTGVGKAVFNQNP 603 Query: 263146 PALAFVDTDGNGNNAIAFAEGGDGFIDADESTATTLVGQIEDGTTI------DSVTITSS 262985 +F D+ ++ + G I+A + T +G I TTI D + Sbjct: 604 ---SFADSITTSSSTFSVFNTGVTNINAFGAATTITMGAISGTTTIRNSLQVDGSATIGN 660 Query: 262984 GGGEDVVLDGATITVTNGTFTIDG 262913 G+ + ++GAT N T+ G Sbjct: 661 ESGDIITVNGAT-NFNNEDLTLRG 683 >ref|NP_899291.1|Sir2 Length = 246 Score = 49.7 bits (117), Expect = 2e-04 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 4/109 (3%) Frame = +3 Query: 494955 RLFVLTGAGMSTDCGIPDYRDERGDWKRSPPM---THQAFMQS-DLARRRYWARSLVGFQ 495122 R+F+ +GAG+ + GI +RD G W+ M F+ + +L + Y R + Sbjct: 2 RIFIFSGAGLDAESGISTFRDANGLWENHDIMQVCNINTFLNNYELTHKFYNQRRV---- 57 Query: 495123 ALSEARPGRGHYALAELERAGRLERLVTQNVDGLHQRAGSRRVIDLHGQ 495269 L++ P HY +AEL ++ T NV L +RAG + V +HG+ Sbjct: 58 QLADVHPNAAHYKIAELCEKYDVDN-YTANVSDLLERAGCKDVKHIHGE 105 >ref|NP_047971.2|gp26 Length = 174 Score = 48.5 bits (114), Expect = 5e-04 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Frame = -1 Query: 365431 MPVPTLIIAANDAVSLGSPMPDTPFYLQLCDRLVALIESGELGPASRLPAERLLAERFAT 365252 MP P I D ++LG+ P T + +A +G GP +LP+ER + E Sbjct: 1 MPAPAQIFTQRDRLTLGAMGPKTQAAYVIISGWIA---TGRYGPGDKLPSERAMCEDLGI 57 Query: 365251 TRVTLRQALSQLESEG--RIHRRN 365186 R LRQ L++L +EG +H+R+ Sbjct: 58 GRTALRQVLAKLVAEGILEVHQRS 81 Score = 40.4 bits (93), Expect = 0.14 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = -3 Query: 62513 VRIRDMIDAGTLTPGSRVP-EKQLCEQFGVSRTPLREALKVLASEGFVELLPNRGARI 62343 V I I G PG ++P E+ +CE G+ RT LR+ L L +EG +E+ R+ Sbjct: 28 VIISGWIATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGILEVHQRSAYRV 85 >ref|NP_064745.1|gp7 Length = 540 Score = 48.1 bits (113), Expect = 7e-04 Identities = 97/476 (20%), Positives = 173/476 (36%), Gaps = 53/476 (11%) Frame = -1 Query: 264976 TLNEGDNSISAVATDAAGNTSEPVNETIELDTTAPGGVDDD----GNSVVFGDDVYNADE 264809 TL G NS + V + N + + T+ LD + P + D GN+++ Sbjct: 9 TLQSGFNS-TEVLNENFENIRDAFDNTLSLDGSTPNAMQADLDLNGNNLI---------G 58 Query: 264808 ATSATLTGT--VEDGATLVSLTIISDGGGDPLTIAGESITLNADGT-----FSYTADLTG 264650 AT + GT + D + +++ + E+ +NA+ + S TA T Sbjct: 59 ATGLLINGTDYLADVEAAKAAALVAQAAAELAENNAETAEVNAEASETAAGLSATAAATS 118 Query: 264649 LPDGNLTATLSIADDAGNTGTLTDTAILDTIVDAAPLATLTS----NDGDGLVSADEAGT 264482 + + T + A + T + T+ ++ A+ AT S ++G+ S A Sbjct: 119 ATNAGASETAASA-----SATASATSATNSATSASQAATSASAAAVSEGNAATSETNAAN 173 Query: 264481 ASYTVSGLXXXXXXXXXXXDI---NGDTATANVAADGTISVDLSGLADGEITSSLA---- 264323 ++ + SG + N T+ +N A T + A T++ A Sbjct: 174 SATSASGSASTATTQASAASVSATNAATSASNAATSATNAAASQAAAATSETNAAASEST 233 Query: 264322 ITDTAGNTATVDGESVTLDTIADTAPLATLTSNDDDGLISADEAGMTSYTVSGLDPDATA 264143 +T +A N AT + + T + A T TS SA A + + A + Sbjct: 234 VTTSATNAATSEANAATSASTATTQATNAATSASTAST-SATNAATSETNAASSASSAAS 292 Query: 264142 VATFTDVNGDSVTA-----------------TIDTDGDYAVDLSGLADGEITSSLAITDG 264014 AT + D+ A T+D DG+ A+ L + + DG Sbjct: 293 SATSAQASKDAALAALDSFDDRYLGQKVSDPTLDNDGN-ALVAGALYFNTTDGIMKVYDG 351 Query: 264013 A---GNTATVTGDSVXXXXXXXXXXXXXXTSNDGDGLV------NVDEAGTASYTVSGLD 263861 + A+++G + +N G G + A + VS + Sbjct: 352 SVWLAAYASLSGALIATNNLSDVLDVTASRTNLGLGTAATTASTDYATAAQGALAVSAVQ 411 Query: 263860 DDATAVATFIDVNGDTATANVAADGT--ISVDLSGLAD---GEITSSLVITDGAGN 263708 + + + V G NVAADG+ ++ AD EI +S+ DG+G+ Sbjct: 412 PNDSPSFGSVTVTGTVDGRNVAADGSKLDGIEAGATADQTASEILTSIKTVDGSGS 467 Score = 42.4 bits (98), Expect = 0.037 Identities = 91/429 (21%), Positives = 149/429 (34%), Gaps = 25/429 (5%) Frame = -1 Query: 264127 DVNGDSV---TATIDTDGDYAVDLSGLADGEITSSLA--ITDGAGNTATVTGDSVXXXXX 263963 D+NG+++ T + DY D+ + + A + + TA V ++ Sbjct: 50 DLNGNNLIGATGLLINGTDYLADVEAAKAAALVAQAAAELAENNAETAEVNAEASETAAG 109 Query: 263962 XXXXXXXXXTSNDGDGLVNVDEAGTASYTVSGLDDDATAVATFIDVNGDTATANVAADGT 263783 +N G + TAS T AT AT +A+A ++G Sbjct: 110 LSATAAATSATNAGASETAASASATASAT------SATNSATSASQAATSASAAAVSEGN 163 Query: 263782 ISVDLSGLADGEITSSLVITDGAGNTATVTGNSVXXXXXXXXXXXXXXTSNDGDGLVNAD 263603 + + A+ ++S G+ +TAT ++ SN NA Sbjct: 164 AATSETNAANSATSAS-----GSASTATTQASAASVSATNAATSA----SNAATSATNAA 214 Query: 263602 EAGTTSYTVSGLXXXXXXXXXXXDINGDTATANVAADGTISVDLSGLADGEITSSLTITD 263423 + + T N T+ AN A + A + T++ T Sbjct: 215 ASQAAAATSETNAAASESTVTTSATNAATSEANAATSAST-------ATTQATNAATSAS 267 Query: 263422 TAGNTATVTGDSVTLDTLAPATPVINFSNATTISGTGDPGSNVTVTDS-----QGNIIGE 263258 TA +AT ++ T +T A ++ S+AT+ + D + DS G + + Sbjct: 268 TASTSAT---NAATSETNAASSASSAASSATSAQASKDAA--LAALDSFDDRYLGQKVSD 322 Query: 263257 PATVDENGNWSV-------TADDALD--DGSEINAVATDAAG------NESDPALAFVDT 263123 P T+D +GN V T D + DGS A +G N SD Sbjct: 323 P-TLDNDGNALVAGALYFNTTDGIMKVYDGSVWLAAYASLSGALIATNNLSDVLDVTASR 381 Query: 263122 DGNGNNAIAFAEGGDGFIDADESTATTLVGQIEDGTTIDSVTITSSGGGEDVVLDGATIT 262943 G A D A + A + V Q D + SVT+T + G +V DG+ + Sbjct: 382 TNLGLGTAATTASTDYATAAQGALAVSAV-QPNDSPSFGSVTVTGTVDGRNVAADGSKLD 440 Query: 262942 VTNGTFTID 262916 T D Sbjct: 441 GIEAGATAD 449 >ref|NP_818206.1|gp133 Length = 948 Score = 47.4 bits (111), Expect = 0.001 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Frame = -3 Query: 399050 LASAKQALGTPYQWGGNSLESGVDCSGLVQMSYAAAGIQVPRTSNQQYQALDHRDRAR-- 398877 L+ A+ +G PY WG S DCSGL+ +Y + GI++ RT+ + Sbjct: 516 LSFARAQIGRPYVWGATGPAS-YDCSGLMLAAYRSIGIEIGRTTYDEVATCTTIPPTNLV 574 Query: 398876 PGDLLFFGAGGRATHVGIYLGDRRMIHAPGSG 398781 PGDL+ G HV ++ G+ ++HAP +G Sbjct: 575 PGDLIQPHDG----HVVMWTGNGTVVHAPQTG 602 >ref|YP_195180.1|virion structural protein Length = 316 Score = 46.6 bits (109), Expect = 0.002 Identities = 62/226 (27%), Positives = 91/226 (40%), Gaps = 33/226 (14%) Frame = -1 Query: 263515 ATANVA-ADGTISVDLSGLADGEITSSLTITDTAGNTATVT--GDSVTLDTLAPATPVIN 263345 A AN A AD +++ D + S+++I+ N +T T G +T+DT+ A Sbjct: 104 APANTADADDSVAAD--------VASAISISAQPANQSTFTPAGGILTIDTIGAAV---- 151 Query: 263344 FSNATTISGTGDPGSNVTVTDSQGNIIGEPATVDENGNWSVTADDALDDGSEINAV---- 263177 AT +GT G++ TD+ G TVD G ++ + DA G ++ Sbjct: 152 ---ATRPAGTYTIGASDYTTDAAGTGATFTITVDGTGAATIDSIDAAGSGFVVDETFTIL 208 Query: 263176 ------ATDAAGNESDPALAF----VDTDGNGNNAIAFAEGGDGF----IDADESTATTL 263039 TD AG + L F V A A+ G + A T T Sbjct: 209 GSVFDNGTDPAGTDGVDDLTFDAATVAAAAATFTITASADAGSVVYQWQVQAATGTRWTN 268 Query: 263038 VGQIEDG-------TTIDS-----VTITSSGGGEDVVLDGATITVT 262937 V TT D+ V +TSS G E+V+ D AT+TVT Sbjct: 269 VSGANSASLALTGLTTADTGKKYRVKLTSSAGAEEVISDAATLTVT 314 Score = 42.4 bits (98), Expect = 0.037 Identities = 50/181 (27%), Positives = 71/181 (39%), Gaps = 9/181 (4%) Frame = -1 Query: 263434 TITDTAGNTATVTGDSVTLD----TLAPATPVINFSNATTISGTGDPGSNVTVTDSQG-- 263273 T TD +GNT V A A + A+ IS + P + T T + G Sbjct: 83 TYTDASGNTRHKAQHLVAFKDAPANTADADDSVAADVASAISISAQPANQSTFTPAGGIL 142 Query: 263272 --NIIGEPATVDENGNWSVTADDALDDGSEINAVATDAAGNESDPALAFVDTDGNGNNAI 263099 + IG G +++ A D TDAAG A + DG G I Sbjct: 143 TIDTIGAAVATRPAGTYTIGASD----------YTTDAAGTG---ATFTITVDGTGAATI 189 Query: 263098 -AFAEGGDGFIDADESTATTLVGQIEDGTTIDSVTITSSGGGEDVVLDGATITVTNGTFT 262922 + G GF+ DE+ T++G + D T + T G +D+ D AT+ TFT Sbjct: 190 DSIDAAGSGFV-VDETF--TILGSVFDNGTDPAGT----DGVDDLTFDAATVAAAAATFT 242 Query: 262921 I 262919 I Sbjct: 243 I 243 >ref|NP_690787.1|immunity repressor Length = 144 Score = 46.6 bits (109), Expect = 0.002 Identities = 25/60 (41%), Positives = 38/60 (63%) Frame = +2 Query: 410153 VAANVRRLRQGASLSQQALAERAGVSRRMLVNIEKGDVNVSLSTLDRLAEALGVLFYALV 410332 V ++ +R+ L+Q LAE+A +SR L +IE+ N SLSTL+ +A ALG+ A+V Sbjct: 3 VGQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSAIV 62 >ref|YP_164732.1|orf97 Length = 2112 Score = 46.2 bits (108), Expect = 0.003 Identities = 108/509 (21%), Positives = 187/509 (36%), Gaps = 49/509 (9%) Frame = -1 Query: 9691 GRLVSGADVALDAG---GNIVNRGIL--SAGVD---------DSGGQRRAGRLTLTAAEL 9554 G + S D A DAG N + G + SA D +G ++ ++ AA Sbjct: 348 GSISSAVDAAKDAGDKANNAASAGAIAQSAASDAASQALAASQAGEDAKSAAVSAQAAGE 407 Query: 9553 DNRGRIDATSHLDTDLGSLDNQGQL-LADELGITTTGTLANDGVLQ----GDSLRIEADS 9389 D + + T S+ N+ + + + I T T +G ++ GD A Sbjct: 408 DAKAQAKDTRDRIIYYSSISNEKDVAIPGKYIIVNTDTYIKNGTIKTAHIGDGAITNAKI 467 Query: 9388 RLVNRGRIQGSQVRLESEHIDNLGENARLAAADSLLIDTEV----LNNLG-GILQFGSEQ 9224 + G Q + I NL D+ + D +V N+L G + F Sbjct: 468 ANLAVGTAQLEDAAITRAKIGNLAVGTA-QIEDAAITDAKVGNLSANHLNAGTIDFSVIS 526 Query: 9223 DVHLDVAQFDND---AGAVLVDG-GTLEADISSLSNQAGIMQADELTVAADQIDNDNGLL 9056 +H++ ++ D A + V+G G + ++ ++++ G + + D +++ N + Sbjct: 527 GIHINASEIDVGKIVADQIFVNGLGDISKNLGTVTS--GNINGTNVNDDIDDLNDPNSMS 584 Query: 9055 AADSAMRLSVGNELSNRGGRLQVTRGDIRLDAGSLDNTEGILLADGLSLRLDGVMANRRG 8876 + R S N L+++ + D + L L M N Sbjct: 585 VIEKQTRASQFNGLTSQYNVILSRAKDANISTTDLTTAYN---------NLKDFMTNPLA 635 Query: 8875 RLTGRWLNLDAASLDNGDEGLI-----STDDLQISLTDSLNNDSGRMQGRDTVKLDAASI 8711 T ++D AS + LI + D+Q+ L +S NND MQ +V AAS Sbjct: 636 D-TSNSSSIDRASYNK----LIFYYNSALSDVQMELRNSYNNDISNMQSSVSVASQAASS 690 Query: 8710 ------------DNRKGQVTGGLFSLTTAMLDNDNGLLDANGAMSLAVGEELSNRSGQL- 8570 DN L + A D+ AN A A G ++ + + Sbjct: 691 AAIVASQATTTGDNASYAAAQALATANQAQTAGDSATRVANNASQAASGAVIAGSTASVN 750 Query: 8569 VGSAINLVAASLDNGDNGMVAADAAGLSVSLGNTLNNAGGRLQAK--NSVALEAHDIDDR 8396 A+++ + GDN A+ A + S G L + + A ++VA EA D Sbjct: 751 ADKAVSVANQAKSAGDNATRVANNASQAAS-GAILAGSTATVIANKASTVANEAKSAGDN 809 Query: 8395 GGVISGRAISL-EGATLTNDAGTIVANQE 8312 ++ A S+ A T D+ AN E Sbjct: 810 ATSVANNATSVANSAKSTADSTYAYANSE 838 Score = 40.4 bits (93), Expect = 0.14 Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 2/156 (1%) Frame = -1 Query: 263395 GDSVTLDTLAPATPV-INFSN-ATTISGTGDPGSNVTVTDSQGNIIGEPATVDENGNWSV 263222 GD T L+ T + +N SN + T GT G+N DS GN+ GE + W Sbjct: 1840 GDGTTQLILSGVTGIALNGSNQSVTFKGTSSTGTNGISMDSYGNVHGEGTS-----TWWR 1894 Query: 263221 TADDALDDGSEINAVATDAAGNESDPALAFVDTDGNGNNAIAFAEGGDGFIDADESTATT 263042 D A G+++ T N + P F D G N G+ I + + Sbjct: 1895 VLDSA---GNQVANFGTAPGNNTTFPKPIFTDEVGGLN--------GNLLIHNKDGQSQM 1943 Query: 263041 LVGQIEDGTTIDSVTITSSGGGEDVVLDGATITVTN 262934 L DG I++ TI + G G+T+T+T+ Sbjct: 1944 LFWHDSDGIGINAPTIYNRTYG-----SGSTVTITS 1974 >ref|NP_203486.1|hypothetical protein Length = 153 Score = 46.2 bits (108), Expect = 0.003 Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 17/110 (15%) Frame = -3 Query: 399041 AKQALGTPYQWG-------GNSLE-----SGVDCSGLVQMSYAAA-----GIQVPRTSNQ 398913 A+ GTPY W G L+ +DCSG V A + ++ + Sbjct: 13 AQAERGTPYCWPDASNGYLGKGLQRPETPEALDCSGTVTCGLYNATRGRLDWRAMHSAQR 72 Query: 398912 QYQALDHRDRARPGDLLFFGAGGRATHVGIYLGDRRMIHAPGSGREVTVS 398763 + L D +PGDL F+G GR THV +GD R++ A G G T+S Sbjct: 73 LFDDLTPTDTPKPGDLAFYGRPGRVTHVMTVVGDGRVVGASG-GNSHTLS 121 >ref|NP_945089.1|gp58 Length = 297 Score = 45.8 bits (107), Expect = 0.003 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 1/138 (0%) Frame = -2 Query: 378441 FILVAELGSFHEAAQRLHLSQPALSRRIQKXXXXXXXXXXXXXXXXXXXTPIGTDFLPRA 378262 F A G+F AA+ L+++Q A+S+++ K T G + R Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRV 74 Query: 378261 RRMIEE-YESSILGIRELATHQKGTVTIACIPTAAFYFLPSVIRGFSEAWPGIRIRILDV 378085 ++ + E++ L ++E H ++TIAC A FL I FS P + +RIL Sbjct: 75 HAILADCVEATALVMKEQTPH---SLTIACASGTATLFLADRIAEFSAEHPEVSVRIL-- 129 Query: 378084 SAKEGLERVISGEADFGI 378031 +EG+ + + E D G+ Sbjct: 130 -VREGVFNLNAAEFDIGV 146 Score = 42.4 bits (98), Expect = 0.037 Identities = 32/112 (28%), Positives = 48/112 (42%) Frame = +1 Query: 112432 AQERHFGRAAERCYVSQPTLSVAVKKLEEELGIALFERSKSTVQVTPLGEKIVEQSQRVL 112611 A+ +F RAAE V+Q +S V KLE LG LF R + +T G++ ++ +L Sbjct: 19 ARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHAIL 78 Query: 112612 EQASLIREMATEGKDQLASPLRIGAIYTIGPYLFPHLIPELSRHAPQMPLYI 112767 A + A K+Q L I I E S P++ + I Sbjct: 79 --ADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRI 128 >ref|NP_861745.1|RB69ORF055c hypothetical protein Length = 211 Score = 45.4 bits (106), Expect = 0.004 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 7/138 (5%) Frame = -1 Query: 144307 NRVEFYGFGASGAVAFDAQHKFFRLQISTAAYTDPHMQNMSAVTLTPRDVVVAISQTGRT 144128 +RV G G + +A A F L I + H + A + P DV++ IS++G+T Sbjct: 51 SRVIITGVGKNANIATKASETFASLGIPSMYLNTGHYSHGDAGFIAPNDVLIHISRSGKT 110 Query: 144127 RALVA---SVRLARETGATVIGLCPSDSPLASEVTLPLY----IDVHEDTEIYTPMSSRV 143969 ++ +++ R ++ C D P +E I V D P S Sbjct: 111 EEMIGVAKHLKMIRPNVKQILLHCNPDIPQENEALFDYSFCTGIAVEVDENSLAPTMSTT 170 Query: 143968 AHLVIIDVLAVGVAKTRG 143915 L +ID A+ ++ RG Sbjct: 171 LLLALIDTFAINLSSERG 188 >ref|NP_777327.1|hypothetical protein Length = 196 Score = 45.4 bits (106), Expect = 0.004 Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 2/103 (1%) Frame = -1 Query: 245794 GVDRNGILIGAAS-GTPVSAVHAGRVVFADWMRGFGNLVIIDH-GDNIMTLYAHLQRFAV 245621 GVD NG G G PV A+ GRVV A +G +V++ H + T Y HL+ V Sbjct: 52 GVDLNGPGGGDTDCGQPVHAMTDGRVVIAGRFPVWGGMVVLWHPSAGVWTRYGHLRDILV 111 Query: 245620 GVGEQVERGATIAAVGDSGGRDTPALYFEVRENGDPIDPGDWI 245492 G+ V G I +G L+F+V P G W+ Sbjct: 112 HPGDVVVAGQQIGTIGKMTTGGYCHLHFDVFIRVPPASEGGWL 154 >ref|NP_943831.1|gp53 Length = 559 Score = 45.1 bits (105), Expect = 0.006 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 10/133 (7%) Frame = -3 Query: 301532 VLASFRNDYHPRIAVTVDMIATGTDVKPLECLLFMRDVKSRNYYMQMVGRGTRSLDADGL 301353 V ++RN + VTV ++ G D +C++ R +SRN Y QM+GR R D Sbjct: 280 VYEAYRNGT-AKALVTVQVLTEGADFPMCDCVVLARPTRSRNLYSQMIGRALRLYDGKQD 338 Query: 301352 AVVSNAARGPKQEFILVDAI----GVKDSQKKETGSL------EKTPSYSQKDLMNAVTM 301203 A+V + A G + LV+ GV ++ E GS+ ++ P V Sbjct: 339 ALVLDLA-GSSRSMKLVNLTQLVPGVDAAEVTEDGSVIEIEPDDELPGEGSDPTPKLVRQ 397 Query: 301202 GVRDEEVLSSLSG 301164 G + V+ LSG Sbjct: 398 GPVEMVVIDLLSG 410 >ref|YP_195256.1|hypothetical protein Length = 567 Score = 45.1 bits (105), Expect = 0.006 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 9/103 (8%) Frame = -1 Query: 265768 TTTFRATSTDPEGQISAPSNTYALNVDTTPPDEPTATVAEDGTAVTGTAEPGSTVTVTDA 265589 TTT+ T+ P G ++ + +D PPD P+ + + D T+ PGST D Sbjct: 205 TTTYTLTAVGPAG-----TSVREVTIDVAPPDAPSVSFSADPTSY---INPGSTTLRWDV 256 Query: 265588 DG---------NDIGSVTADPGDGSYSVLLDPALTNGESVTAT 265487 G NDIG +T+ G S+++ P++T +++AT Sbjct: 257 TGFQITSISINNDIGELTSASG----SIVVSPSVTTDYTISAT 295 >ref|NP_835645.1|putative transposase Length = 246 Score = 45.1 bits (105), Expect = 0.006 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 6/117 (5%) Frame = -3 Query: 28586 HKLSRRLIN----ENQVVCVESLKV--KNMLRNPSLAKAIADAGWGEFARQLEYKAQWAG 28425 H +SRR+++ E + V +E L K++ S + I + + ++ YK AG Sbjct: 95 HTISRRIVDRAIAEGKGVRLEDLSGIRKSVRVRKSQRRRIHRWAFYDLRIKIAYKCALAG 154 Query: 28424 RQLVRIDPWYPSSKRCSDCGHIKDALPLSVRAWDCPACGVTHDRDINAARNIKAAGL 28254 IDP Y +S+RC CGH + A S + C +CG+ + D+ A NI G+ Sbjct: 155 VPFELIDPRY-TSQRCPVCGHTERANRKSQSKFVCRSCGLEANADVVGAINIALGGV 210 >ref|NP_536415.1|putative chromosome partitioning protein Length = 273 Score = 44.3 bits (103), Expect = 0.010 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 14/160 (8%) Frame = -2 Query: 164328 RAQGVMQPIVVRPVGESRYEIIAGERRWRAAQLAELD-----------VIPAVVREV--- 164191 RAQGV++P++ E+ ++ RR R EL+ IPA+ + V Sbjct: 53 RAQGVLEPVLFYKDPETGENLVIDGRR-RVINARELNRQLIEAGEEPITIPAIPKRVMRD 111 Query: 164190 SDEXXXXXXLIENIQRENLNPVEEAMALKRLLDDFELTQQQVADAVGKSRAQVANLLRLL 164011 SD+ + N RE +P+ A + R+L D T+ +A A G V + L+LL Sbjct: 112 SDKSFVGMMVSTNEIREEDSPINRAEKMARML-DVGHTEDAIAVAFGVEVPTVRSALKLL 170 Query: 164010 SLDEEVQTLLERGDLDMGHARALLTLPAARQRSIAREVVE 163891 V+ +E + + HA L L QR+ + +++ Sbjct: 171 DCCMAVRDAVEAEQITVSHALKLAKLSPDEQRAKVQALID 210 >ref|NP_049403.2|putative tail component protein Length = 1656 Score = 43.5 bits (101), Expect = 0.017 Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 24/203 (11%) Frame = -1 Query: 246520 EALGENIEQTQARLEGTRDARDEAQRELREVETRLAETHQ-------RLTGLQREQDQLD 246362 + LG +I+ Q ++E + + + + EV + + Q RL L+ +Q Q Sbjct: 59 DGLGNSIQNQQQKIEKLKQEQSQLKGNTVEVAEQYLKYQQQIDQATTRLAALENQQRQAK 118 Query: 246361 QEVAELKKRRQTLEIERRRQREALAKQLNALYRLGPTPQLKLLLNQSDPARLDRLQQY-- 246188 Q + K L+ E + Q EA + L G + D AR ++L+QY Sbjct: 119 QSLDYHKSGLAELQKEYKAQNEASDTYIKRLKAEG----------KEDEARQEQLKQYKG 168 Query: 246187 ----LNHLNQARQQRLDALA-----------KLEDQLDETQRALQSHQARLDDLGDELTA 246053 LN + +++ L+ +A K + +LDET +L + D L DE+ Sbjct: 169 SIANLNKQYETQKEMLERIATQAGKTSDEYRKQKQRLDETATSLAHARNAADRLNDEI-- 226 Query: 246052 RRETLSEQRGKRETILAQFKERY 245984 EQ + T + + K+ + Sbjct: 227 ------EQSQRSSTFIGRLKDSF 243 >ref|NP_818167.1|gp94 Length = 1277 Score = 43.5 bits (101), Expect = 0.017 Identities = 89/384 (23%), Positives = 130/384 (33%), Gaps = 5/384 (1%) Frame = -1 Query: 266608 EPGTLTVDGDLNDTTPPATPTITMGSDDTAPQTGDLDSGDSTNDTTPTLSGQAEARSIVT 266429 +PGT D TP A T + G+ + Q+ D T+ T G ++ Sbjct: 661 DPGTSISDWLGVGGTPGAAGTRSNGAGQSMNQSRDSGGVQDTDSTQAKPGGGGFDPNM-- 718 Query: 266428 IYSGETELGTTIANAAGEWSFTPEALDDGDYDFTVTATGSTGNVSDASDPFTLTVDTQPP 266249 ++ G + TP D + G G A++P P Sbjct: 719 ----NDRSNRPVSEGGGATNGTPAGWSAADAASPGSNNGPHGAAGSATNPTPGQPGNNTP 774 Query: 266248 LAPEVNPTNGEILTGSAEPSSSVTLTDEQGGTITTVETDRNGNWSYAPDTPLEDESTFTA 266069 AP P N L G A GT T T G + ++ T + Sbjct: 775 AAPGAAPKNN--LAGPA-------------GTNTPSATPPGGGQIGQGEYQIQSGDTLSD 819 Query: 266068 VARDAAGNTSEPGNATVDADLEDNLPPSDPVIITSIDATEPVTGNIDNGGTTND---SNP 265898 +A+ A A ++N+ +DP I + D G G TT D S Sbjct: 820 IAQRAGYGGDYNSLAQ-----QNNI--ADPDKIFAGDTIN--IGTPGGGATTPDVDLSAA 870 Query: 265897 TLQGTAEATNMVQVWADKAMLGETQADNFGNWSFRISARLLDGTTTFRATSTDPEGQISA 265718 T G A+A N +A + G T A N + + TTT T + +A Sbjct: 871 TPGGGADANNTASDFAGTSTSGATDATGTDNGTSTPADNAAAQTTT-ETNKTGRRRRQAA 929 Query: 265717 PSNTYALNVDTTPPDEPTATVAEDGTAVTGTAEPGSTVTVTDADGNDIGSVTADPGDGSY 265538 PS + A +T PD + D A P S T + ND+G DP Sbjct: 930 PSGSSATPAPSTTPDSEGLVDSMDNPAAPTGGTPASN-TALSSPNNDLG----DP----- 979 Query: 265537 SVLLDPALTNGESVTAT--ATDAA 265472 S +D + G + AT TDA+ Sbjct: 980 SSAIDTGASTGGTPDATGAGTDAS 1003 >ref|NP_049935.1|minor tail protein Length = 1626 Score = 42.7 bits (99), Expect = 0.028 Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 7/163 (4%) Frame = -1 Query: 246508 ENIEQTQARLEGTRDARDEA----QRELREVETRLAETHQRLTGLQREQDQLDQEVAELK 246341 E ++Q Q++L+GT E Q+++ + TRLA + ++ D +AEL+ Sbjct: 73 EKLKQEQSQLKGTTAETAEQFLKYQQQIDQATTRLASLESQQKKAKQSLDYHKSGLAELQ 132 Query: 246340 KRRQTLEIERRRQREALAKQLNALYRLGPTPQLKLLLNQSDPARLDRLQQY---LNHLNQ 246170 K + + E K+L A + D AR ++L+QY +++LN+ Sbjct: 133 KEYK----PKNEASETYVKRLKA-------------EGKEDEARQEQLKQYKGAISNLNK 175 Query: 246169 ARQQRLDALAKLEDQLDETQRALQSHQARLDDLGDELTARRET 246041 +++ + L ++ Q +T + + RLD+ + R T Sbjct: 176 QYEKQKEMLERIAKQSGKTSDEYRKQKQRLDETATSMAHARNT 218 >ref|NP_835564.1|hypothetical protein Length = 1509 Score = 42.7 bits (99), Expect = 0.028 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Frame = -1 Query: 245698 GFGNLVIIDHGDNIMTLYAHLQRFAVGV--GEQVERGATIAAVGDSGGRDTPALYFEVRE 245525 G+GN V I G I L+AHL+ F+ G V+ G + G++G P L+FE+R Sbjct: 1173 GYGNYVKITSGV-IDMLFAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPHLHFEMRR 1231 Query: 245524 NGDPIDPGDWI 245492 NG DP ++ Sbjct: 1232 NGRHFDPEPYL 1242 >ref|NP_958615.1|77ORF001 Length = 1509 Score = 42.7 bits (99), Expect = 0.028 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Frame = -1 Query: 245698 GFGNLVIIDHGDNIMTLYAHLQRFAVGV--GEQVERGATIAAVGDSGGRDTPALYFEVRE 245525 G+GN V I G I L+AHL+ F+ G V+ G + G++G P L+FE+R Sbjct: 1173 GYGNYVKITSGV-IDMLFAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPHLHFEMRR 1231 Query: 245524 NGDPIDPGDWI 245492 NG DP ++ Sbjct: 1232 NGRHFDPEPYL 1242 >ref|YP_164769.1|orf134 Length = 1062 Score = 42.4 bits (98), Expect = 0.037 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 24/130 (18%) Frame = -3 Query: 399041 AKQALGTPYQWGGNSLESGV-------DCSGLVQMSYAAAGIQVPR-------------- 398925 +K+ G+ Y G + S + DCS V Y AG+ + Sbjct: 926 SKRGKGSIYDQGAHGDTSALEKSPARGDCSQFVYYCYKEAGLDISHGGSWTTWDIAKSSN 985 Query: 398924 ---TSNQQYQALDHRDRARPGDLLFFGAGGRATHVGIYLGDRRMIHAPGSGREVTVSSLD 398754 S+ + + + GD++FF G +H+GIY+GD + + ++ +SL Sbjct: 986 LKTISSNGSNKSSAKKKMKNGDIIFFNTEGTDSHMGIYIGDGKFVGFQSEPNMLSQASLS 1045 Query: 398753 IRYWRQHYLG 398724 YW+ + G Sbjct: 1046 NSYWQGAFGG 1055 >ref|YP_003907.1|putative tail tape measure protein Length = 957 Score = 42.4 bits (98), Expect = 0.037 Identities = 52/227 (22%), Positives = 104/227 (45%), Gaps = 19/227 (8%) Frame = -1 Query: 246556 AQDSPEEVHRQLEALGENIEQTQ-ARLEGTRDAR-----------DEAQRELREVETRLA 246413 ++D+ +++ L+A+ +E+ + +E R R + ++E E+E R Sbjct: 521 SRDNYDQLASDLDAINARVEKGEMGYIEAMRQRRTLEKQYSEETKEAIRKEAEEIEKRNR 580 Query: 246412 ETHQRLTGLQREQDQLDQEVAELKKRRQTLEIERRRQREALAKQLNALYRLGPTPQLKLL 246233 E +++ ++ +Q D+E+ L+ + + L+ E + + L+ Q AL+ T + +L Sbjct: 581 ERNKQSKIVRSPTEQFDKELISLRAQLKVLQ-EHKEIGQKLSAQRKALFTTEAT--IAVL 637 Query: 246232 LNQSDPARLDRLQQYLNHLNQARQQRLDALAKLEDQLDETQRALQSHQARLDDLGD---- 246065 S +L ++ L A Q+R+ LAK + ++ + Q +L+DL D Sbjct: 638 REASSKRQLSAEEKAL----LASQERVIELAKQKAEIGDQ----IVKQQQLNDLTDKSLK 689 Query: 246064 ---ELTARRETLSEQRGKRETILAQFKERYTTQRAKLAALTDDRENA 245933 E+TA E L+ RG R ++A+LA +T D N+ Sbjct: 690 FVNEMTAATEQLNASRG--------LSTRDMERQAELAKITTDYINS 728 >ref|NP_945090.1|gp59 Length = 429 Score = 42.4 bits (98), Expect = 0.037 Identities = 73/302 (24%), Positives = 118/302 (39%), Gaps = 32/302 (10%) Frame = +3 Query: 350589 SFFDKISIAVLLSSPAFQGALGVEGETTKLGFLMTGFLLSYGFSSMFLGFLSDIISPKKC 350768 SFF I + S +L + T +GF M + +G ++D + + Sbjct: 41 SFFSVIIAKLFFPSTDDNLSLLLSVSTIGVGFFMRPI------GGIVIGGIADKVGRRAA 94 Query: 350769 LYAMLVLTAVIMTIMGFAESYAQ--------MLTLRIVLGIAEGPMFAIAYTIVKRTFAP 350924 L + L ++GFA +Y ++ R++ G + G A T R P Sbjct: 95 LTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGGEMGGA-TAYLRERVP 153 Query: 350925 REQARATMLWLLGTPIGASIGFP---------FTIYILD-----NFGWRATFFAMALLTI 351062 E+ W I ASIGF F + LD ++GWR F LL + Sbjct: 154 AERHGYYTSW-----IQASIGFAIILASVLAVFIVKCLDEQQIESWGWRIPF----LLGL 204 Query: 351063 PLLMLVVWVFRKVDVSTKSPLQKARGDKHVPLSSHRQSTREL---FGNLSFWAICVFNIA 351233 L + +++ +++ P + G+ + R +RE FG + FW +C + + Sbjct: 205 GLGPVGIYIRSRLN-DPGFPADERLGECAPVVEVVRSFSREALVGFGLVVFWTVCSYVLL 263 Query: 351234 FLAYLWGLNSWLPTYLVEDKGIDLDSAGIFSSLPFIAMLVGEVVGAFV-------SDRFD 351392 F ++PTY K + L SS FIA+LVG + FV SD F Sbjct: 264 F---------YIPTY--ASKVLKLP-----SSTGFIAVLVGASIVLFVTPLIGHLSDLFG 307 Query: 351393 KR 351398 +R Sbjct: 308 RR 309 >ref|YP_195253.1|hypothetical protein Length = 3779 Score = 42.0 bits (97), Expect = 0.049 Identities = 159/771 (20%), Positives = 250/771 (32%), Gaps = 89/771 (11%) Frame = -1 Query: 266695 GNWSFQPDAPLVDGTEVNATATDAAGNVSEPGTLTVDGDLNDTTPPATPTITMGSDDTAP 266516 GN+ + D VDG ++N T+ + L + GD I G++ T Sbjct: 2938 GNFKIEDDIS-VDGGDINTTSEVFNFINNNANILNLIGDAQ--------VINFGNNTTND 2988 Query: 266515 QTGDLDSGDSTNDTTPTLSGQAEARSIVTIYSGETELGTTIANAA------------GEW 266372 Q L G S+N+ + A S+++++ T IA+ A G W Sbjct: 2989 QI--LSVGGSSNNQIVRIGSNA-GTSLLSVHPNSTNANVDIASVADNAANSCKVVIGGAW 3045 Query: 266371 SFTPEALDDGDYDFTVTATGSTGN-VSDASDPFTLTVDTQP------PLAPEVNPTN--- 266222 T L G Y V T G ++ + L T+ EVN Sbjct: 3046 QNTDSTLTIGTYQTIVDGTLEVGGQIAPGTGTARLFAQTKEVRLFDNDRTTEVNAFTSAN 3105 Query: 266221 -------GEILTGSAEPSSSVTLTDE-----QGGTITTVETDRNGNWSYAP--------D 266102 G T + +LT + +GGT + G +S P D Sbjct: 3106 RLNLGSLGGFTTIRNSLNVQASLTSDSNIILKGGTSAGIIEIIRGRFSTTPILHNTGSLD 3165 Query: 266101 TPLEDESTFTAVAR--DAAG------NTSEPGNATVDA-DLEDNLPPSDPVIITSIDATE 265949 TP D +T+ R D AG NT G + D + PSD + + Sbjct: 3166 TPNIDFYKYTSTGRVIDTAGQSLWGNNTFLSGGGQISGFDNVNTSDPSDLRVAGNYTFVF 3225 Query: 265948 PVTGNIDNGGTTNDSNPTLQGTAEAT--NMVQVWADKAMLGETQADNFGNWSFRISARLL 265775 P G+ G D + GT T + + D L + G + I+ + Sbjct: 3226 PTGGS--GSGAAFDVSVAFDGTVTLTIVSSGSGYNDNETLTILDSSVGGGGAPNITLDI- 3282 Query: 265774 DGTTTFRATSTDPEGQISAPSNTYA---------LNVDTTPPDEPTATVAEDGTAVTGTA 265622 +G DP P + A L +D P P G +TG Sbjct: 3283 NGVN-------DPGDVYILPISIPAAADFDIGDLLLIDRGNPASPDEFSVLGGGTITGLR 3335 Query: 265621 EPGSTVTV-----------TDADGNDIGSVTADPGDGSYSVLLDPALT---NGESVTATA 265484 + + V TD G I A G G Y+ D + +S + Sbjct: 3336 DQSKSEIVRVVGLTNLTDPTDPKGFRISVQRAQEGTGEYTDHPDGCIIAKLTKQSAASFI 3395 Query: 265483 TDAADNESXXXXXXXXXXXXXXXXXAILANDTGLNDGDGITSDAIVNVGGIEDGATW--- 265313 T NE TG N G + GGI + Sbjct: 3396 TGVDINEDGILDEPR----------------TGFNAGTTNVRIGVAEFGGILTSQDYLRL 3439 Query: 265312 -EYSIDGGDSWITGTGNSFELPEGDYDNGVVQVRQTDAAGNTSDLVTLGPVAVDQTAPVV 265136 E I G I+ S + +G D +Q + GNT + G + V Sbjct: 3440 SESEIVGIADIISSDIQSLIVNDGG-DPATIQFKVESTTGNT---IIAGDLGVGLGYNKF 3495 Query: 265135 NVDDLDAPINDPSPALSGAVSDPDATVTVTVNGDDYTAANNGDGTWTLAEGTVTLNEGDN 264956 VD N+ + A++G ++ + T+T+NG G+ +T+ G Sbjct: 3496 TVD-----ANNGNTAIAGTLTTEN---TLTINGSTVV----GNQFFTITNG--------- 3534 Query: 264955 SISAVATDAAGNTSEPVNETIELDTTAPGGVDDDGNSVVFGDDVYNADEATSATLTGTVE 264776 G+T P+ T ++DT + GN +FG D T + Sbjct: 3535 ----------GSTGVPLRTTFQIDTANGNVTMNGGNISIFGTD----GTTPRLTFNNSSG 3580 Query: 264775 DGATLVSLTIISDGG---GDPLTIAGES------ITLNADGTFSYTADLTG 264650 D T S + + DG G P+ +AG++ + +N+DG ++ G Sbjct: 3581 DFTTYGSFSALGDGTSTFGGPIEVAGDATINGGDLVVNSDGNEIFSVSDNG 3631 >ref|NP_944303.1|conserved phage mega protein Length = 4602 Score = 40.8 bits (94), Expect = 0.11 Identities = 33/79 (41%), Positives = 40/79 (50%), Gaps = 7/79 (8%) Frame = -1 Query: 137104 ERSTGRRHPPWRRGRDSSLLHRQPRSRRAGMALDRGG---QHRRARDAGVP---GLCAAA 136943 E+ GR P GRD+ + QP R AG DRGG ++R++RDAG P G A A Sbjct: 1478 EQGAGRVSPD-EGGRDAGRVPEQPSGRDAGG--DRGGAAKRNRQSRDAGEPAVRGAAAEA 1534 Query: 136942 GLGAVH-RSPGGGDDTGRG 136889 G H R G GD G G Sbjct: 1535 DAGDQHGREVGRGDRAGAG 1553 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 40.8 bits (94), Expect = 0.11 Identities = 59/177 (33%), Positives = 66/177 (37%), Gaps = 16/177 (9%) Frame = -2 Query: 250929 RPAHPPRRTQPDDRGPWH-RPYRGI----HPRIRPTARRSVVDHPTPRHAPHIATLRSLP 250765 R A PP P R H R +R + HP + P RS DHP P H A R Sbjct: 9 RRARPPHTRTPAPRTRAHPRAHRRVRTRPHPHLGPARDRSP-DHPEPDHPCRRAPSRPA- 66 Query: 250764 RLAALERTGHGRDVAEGRFSRPRG-AHACFLAAGRARH-RQPRCHPADAPRPYRFRVWRP 250591 G R R +RPR A C G A H P C PA P RP Sbjct: 67 -------AGPRRHPPVAR-TRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRP 118 Query: 250590 LA---GRQPHH---RA*PFRHQRDGL---SRQRTRRDHARNGSRHTRPDARRRTAER 250447 A R HH RA R + L +R RT + R R RPD RRR R Sbjct: 119 RAPECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPRRRVQPR 175 >ref|NP_612999.1|CI protein Length = 235 Score = 40.4 bits (93), Expect = 0.14 Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 4/146 (2%) Frame = -2 Query: 115875 EDAKTQFAARLREAMQQAGYAP--KPAILEREFNLRNPGRPVTLHGVRRWLRGETLPTQE 115702 E + +FA RL +A ++AG + + R +L + G V +W E+LP QE Sbjct: 5 EKVRKEFAQRLAQACKEAGLDEHGRGMAIARALSLSSKG-------VSKWFNAESLPRQE 57 Query: 115701 KLVVLAEWLKVPPEALRFGTQVRHRIRESEQLWEALSYRERETLEVFASLPPSQRAIARE 115522 K+ LA++L V L+ GT + + +TL L + E Sbjct: 58 KMNALAKFLNVDVVWLQHGTSLN-------------GANDEDTLSFVGKLKKGLVRVVGE 104 Query: 115521 VIMALAKAGKW--ERQAGLQTDDDEP 115450 I+ + A + ER L+ D+P Sbjct: 105 AILGVDGAIEMTEERDGWLKIYSDDP 130 >ref|YP_006479.1|DarB Length = 2255 Score = 40.4 bits (93), Expect = 0.14 Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Frame = -3 Query: 296291 QYFTPRALIQAMVACVQ---PQPGKTIADPSAGTGGFFLAAYDWITEHHGARMDREQKQF 296121 +Y+TP+ + + + ++ G T+ +PSAGTG F T+ G M Sbjct: 90 EYYTPKPIAEGVWEIMKLYGADVGNTL-EPSAGTGVFNE------TKPVGTVMT------ 136 Query: 296120 LKHHAFHGNEIVANTRRLCLMNLFLHNIGEIDDQPNIAPTDALIGPAPA-RYDYVLANPP 295944 EI + + R+ N LH +D I+P + L P +D+V+ N P Sbjct: 137 -------ATEISSVSGRI---NQLLHP----EDSVQISPFEQLAVSTPNDSFDHVVGNVP 182 Query: 295943 FGRKSSMTVTNEEGEQEKEDFVYNRQDFWATTSNKQLNFVQHIRTMLKENGQAAVVVPDN 295764 FG + + ++ +E + Y F+ + +K G V+VP + Sbjct: 183 FGGRDNTRNIDKPYAEETDMGSY---------------FMLRMLDKIKPGGFMCVIVPPS 227 Query: 295763 VLFEGGAGETVRRKLLTTTELHTILRLPTGIFYANGVKANV 295641 ++ G + +R +L E RLPTG F ANG V Sbjct: 228 IV-SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVV 267 >ref|YP_024951.1|putative DNA polymerase III protein Length = 171 Score = 40.4 bits (93), Expect = 0.14 Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 13/150 (8%) Frame = +1 Query: 194089 MLLEFGHHLVRTVATDGHRLAVC--ARSADVEVEPSQKLIVPRKGILELARL-------- 194238 M +E + R VATDGH+ V A DV + ++I+P + I L Sbjct: 1 MFIEATPYETRLVATDGHKAGVFRYAVENDVPAGETAEVIIPHEAIDRLKAAKSDLVHFV 60 Query: 194239 -LDGSDEPVELTIGGTHLRAQTGDFTFTSKLVDGKFPDYDRVIPRGGDKVVIAERGELRQ 194415 L+ D L + R Q F + VDG++PDY R+ P+ V R +L Sbjct: 61 RLEVEDRQCSLCVDAMGARIQ-----FVA--VDGRYPDYRRIFPKTMSGVPGQYRADLLM 113 Query: 194416 VLSRTAILSNEKYRGV--RLNLEENNLRVT 194499 ++ A L +K V RL ++ RV+ Sbjct: 114 DFAKAAKLLIKKSPAVMPRLTYNGDSARVS 143 >ref|NP_049485.1|repressor protein CI Length = 235 Score = 40.4 bits (93), Expect = 0.14 Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 4/146 (2%) Frame = -2 Query: 115875 EDAKTQFAARLREAMQQAGYAP--KPAILEREFNLRNPGRPVTLHGVRRWLRGETLPTQE 115702 E + +FA RL +A ++AG + + R +L + G V +W E+LP QE Sbjct: 5 EKVRKEFAQRLAQACKEAGLDEHGRGMAIARALSLSSKG-------VSKWFNAESLPRQE 57 Query: 115701 KLVVLAEWLKVPPEALRFGTQVRHRIRESEQLWEALSYRERETLEVFASLPPSQRAIARE 115522 K+ LA++L V L+ GT + + +TL L + E Sbjct: 58 KMNALAKFLNVDVVWLQHGTSLN-------------GANDEDTLSFVGKLKKGLVRVVGE 104 Query: 115521 VIMALAKAGKW--ERQAGLQTDDDEP 115450 I+ + A + ER L+ D+P Sbjct: 105 AILGVDGAIEMTEERDGWLKIYSDDP 130 >ref|YP_024814.1|Pas28 Length = 1291 Score = 40.4 bits (93), Expect = 0.14 Identities = 220/963 (22%), Positives = 314/963 (32%), Gaps = 132/963 (13%) Frame = -1 Query: 267079 TPPDAPTIDPSNGKT-ISGEAEPGSTLTLYANGEAIGTTTANGQGEWTFTTDDLDDGDYT 266903 TPPDAP + + + E G +A + G A ++T + + G + Sbjct: 51 TPPDAPPVGERRHQVRLRARGEDGDAW--WAVRLSSGALVAGAAAQFTASPGTVT-GSWG 107 Query: 266902 FTATATDSA---GNVSGVSDGYA---LTVDTSAPGSPTLDPS--DGS-----ILIGTAEP 266762 F A A S V+G S G L +D + +PT P DGS + TA+P Sbjct: 108 FGAPADGSTVLFTYVTGQSAGVRIEELYLDVDSREAPTFTPQTLDGSGAVTATISDTAQP 167 Query: 266761 ---GSAITLTD----------------------GDGNAIG-QTTTDANGN-------WSF 266681 SAI L D G A QTT NG WS Sbjct: 168 TLRASAIDLDDLNARQYRYWVTLNGAIVWDTGVTSGTATARQTTALDNGTYVAHFQVWST 227 Query: 266680 QPDAPLVDGTEVNATATDAAGNVSEPGTLTVDGDLNDTTPPATPTITMGSDDTAPQTGDL 266501 E T G V++PG TVD TP T+ + AP +L Sbjct: 228 LGQNTAYASAEETVVFTVQVGQVAKPGNPTVD------VVDGTPFYTI--EGCAPFVDEL 279 Query: 266500 DSGDSTNDTTPTLSGQAEARSI---VTIYSGETELGTTIANAAGEWSFTPEALDDGDYDF 266330 D G G E + + V Y T G + A+A A GD+D Sbjct: 280 DGG----------VGYIEIQRVDCPVGGYLSLTGSGDSHASAPDPGLAVNAARVSGDFDT 329 Query: 266329 TVTATGSTGNVSDASDPFTLTVDTQPPLAPEVNPTNGEILTGSAEPSSSVTLTDEQGGT- 266153 +V+ TG SD + E +LT + P+ + D G + Sbjct: 330 SVSGWAPTGGTLTHSDLY------------EHEGHGSALLTVAGSPAQTYVRPDGIGNSA 377 Query: 266152 -ITTVETDRNGNWSYAP-------------DTPLEDESTFTAVARDAAGNTS---EPGNA 266024 +T T R W YAP D + S + AAG + G A Sbjct: 378 LVTPGRTYRTTFWLYAPVAIASVTAAIDWFDAGVGYLSGVYESSSIAAGTWTFFEAEGVA 437 Query: 266023 TVDADLEDNLPPS------DPVIITSI---DATEPVTGNI-----DNGGTTNDSNPTLQG 265886 VDA + N P+ V +T + D T PV + + G TL Sbjct: 438 PVDA-VYGNYGPTIIDVDGTEVYVTQVTFDDITAPVDLEVVMKVGRDDGWLPSQEETLAS 496 Query: 265885 TAEATNMVQVWADKAMLGETQADNFGNWSFRISARLLDGTTTFRATSTDPEG------QI 265724 T + W + LGET FG WS ++ L T T + DP G + Sbjct: 497 HYLTTGDQRAW--RLSLGETGYLEFG-WSEDGTSALEFATATDK-VPVDPYGNAWVRLRF 552 Query: 265723 SAPSNTYALNVDTTPPDEPTATVAEDGTAVTGTAEP----------GSTVTVTDAD---G 265583 A S AL T DE + VA V P G+ + T + G Sbjct: 553 LADSGGAALTEFATREDEDSPWVAVGEPIVGSGPRPLFASTADYIVGAYMAATPLNRWTG 612 Query: 265582 NDIGSVTADPGDGSYSVLLDPALTNGESVTATATDAADNESXXXXXXXXXXXXXXXXXAI 265403 + DG ++L+P TN S T D N A+ Sbjct: 613 RVYSAEIRSAPDG--QLMLNPVFTNHLSGTTEFEDGQGNLWTVHSPASIYSPTSTVSVAM 670 Query: 265402 ---LAND--------TGLNDGDGITSDAI---------VNVGGIEDG----ATWEYSIDG 265295 LA+D T G G+T D G EDG + W + D Sbjct: 671 LGPLASDECASYVDFTLPRSGVGLTCDHAPEPCCSYYRARTIGREDGDLRISDWSDTYDP 730 Query: 265294 GDSWITGTGNSFELPEGDYDNGVVQVRQTDAAGNTSDLVTLGPVAVDQTAPVVNVDDLDA 265115 G +P G +V TDA+ P ++T + Sbjct: 731 G------------IPSGI----IVMWPGTDAS---------LPEGWERTTALDGRYPKGV 765 Query: 265114 PINDPSPALSGAVSDPDATVTVTVNGDDYTAANNGDGTWTLAEGTVTLNEGDNSI-SAVA 264938 P + P +G AT + T G + ++ T + T T D ++ + VA Sbjct: 766 PDDTTQPGTTGGA----ATHSHTTPGHTHDTSHLHTVTGATSAATGTFASSDGAVGTTVA 821 Query: 264937 TDAAGNTSEPVNETIELDTTAPGGVDDDGNSVVFGDDVYNADEATSATLTGTVEDGATLV 264758 + +T N + +A G + N + ++ + + L DGA + Sbjct: 822 LNTHTHTRPSTNSATVVSGSASPGTNTASNDPARAEVIFMESDGSPLGL----PDGALAL 877 Query: 264757 SLTIISDGGGDPLTIAGESITLNADGTFSYTADLTGLPDGNLTATLSIA------DDAGN 264596 +L + G D S N G F A G DG TA S+A D G+ Sbjct: 878 TLDVALSGWAD-------SSLGNTGGRFIKGAPAAG--DGGTTAGSSVASHTHDIDAHGH 928 Query: 264595 TGT 264587 TGT Sbjct: 929 TGT 931 >ref|YP_024813.1|Pas27 Length = 978 Score = 40.4 bits (93), Expect = 0.14 Identities = 62/302 (20%), Positives = 118/302 (39%), Gaps = 7/302 (2%) Frame = -1 Query: 8746 GRDTVKLDAASIDNRKGQVTGGLFSLTTAMLDNDNGLLDANGAMSLAVGEELSNRSGQLV 8567 G + + A + + G + + +AML N +L G++ A ++ G ++ Sbjct: 708 GLTIIGMLAVGLAKATPSIIGAILKINSAML---NAVLQVLGSLISAGARLMAGFVGSII 764 Query: 8566 GSAINLVAASLDNGDNGMVAADAAGLSVSLGNTLNNAGGRLQAKNSVALEAHDIDDRGGV 8387 + + +++ + +V+A A+ S L +AG L Sbjct: 765 SNGVGAARGAINAVRSAIVSAAASAAS-----WLTSAGRSL------------------- 800 Query: 8386 ISGRAISLEGATLTNDAGTIVANQEALRLSLTGALDNDAGQLIGKSISLEAGSITNXXXX 8207 I+G ++ GA GT+ + ++R +TGAL AG L+ + G I+ Sbjct: 801 INGLVSAIRGAI-----GTVRSVISSIRGVVTGALAGAAGWLVNAGRQIINGLISGIQAG 855 Query: 8206 XXXXXXXXLVANEALNNRNGQMQTAHGDLHLDAGQLDNTYGVLLADH---LDLRVGDTVT 8036 LN+ G + G LD L+ + +++A L+ R D++ Sbjct: 856 FGR-------VRGLLNSLTGMLPDWKGPAELDRRILEPSGDMVMAGFERGLEGRF-DSIR 907 Query: 8035 NRGGHLTGDALTLGADSLDN----GDDGLIGVADALQITLAGALTNAGGQIQSDGDAALN 7868 G LTGD T A + + G DG ++ + +T+ GQ ++ G+ A Sbjct: 908 KTLGDLTGDLPTFTATAASSGAARGGDGASQLSPNMSVTIMPGAIVVQGQGRAAGEEAAE 967 Query: 7867 AM 7862 A+ Sbjct: 968 AL 969 >ref|NP_817972.1|gp121 Length = 212 Score = 40.0 bits (92), Expect = 0.18 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Frame = +3 Query: 394323 GSPSG----NTGMTRRRKIGKRSATSRHRRPSSGSTWKESATRASWRRMPIRWKVP-RSC 394487 G P+G NT R +IG AT+ HR S W+ + W R PI P R+ Sbjct: 9 GRPAGVRFPNTPTHRGARIGLAGATAPHRTGGPASDWRGQGAASDW-RPPIGLAAPHRTY 67 Query: 394488 ARAWRI 394505 ARAWRI Sbjct: 68 ARAWRI 73 >ref|NP_536643.1|hypothetical protein Length = 112 Score = 40.0 bits (92), Expect = 0.18 Identities = 23/48 (47%), Positives = 34/48 (70%) Frame = +2 Query: 410171 RLRQGASLSQQALAERAGVSRRMLVNIEKGDVNVSLSTLDRLAEALGV 410314 RLR+ L+QQ +AERAGVS RML +E+G+ V ++ + RL+ AL + Sbjct: 19 RLRK--RLTQQQVAERAGVSLRMLQRLEQGERVVDIAQIRRLSAALEI 64 >ref|NP_695088.1|putative helicase Length = 443 Score = 39.7 bits (91), Expect = 0.24 Identities = 15/85 (17%), Positives = 46/85 (54%) Frame = -3 Query: 46598 ESSVVFCNTKRETQQVAEALNAAGFSALALNGDLEQPDRDRILAMFANKSVSVLVATDVA 46419 + ++V+ ++ ++ V+ N G++++A++G RDR + F + ++++V ++ Sbjct: 214 KQAIVYTHSVEASESVSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDGKLTIMVNCELF 273 Query: 46418 ARGLDIDALDAVFNYQIARELEVHV 46344 G+D+ +D + + L +++ Sbjct: 274 TEGIDLPNVDVCIMLRPTQSLSLYL 298 >ref|NP_049999.1|putative helicase Length = 443 Score = 39.7 bits (91), Expect = 0.24 Identities = 15/85 (17%), Positives = 46/85 (54%) Frame = -3 Query: 46598 ESSVVFCNTKRETQQVAEALNAAGFSALALNGDLEQPDRDRILAMFANKSVSVLVATDVA 46419 + ++V+ ++ ++ V+ N G++++A++G RDR + F + ++++V ++ Sbjct: 214 KQAIVYTHSVEASESVSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDGKLTIMVNCELF 273 Query: 46418 ARGLDIDALDAVFNYQIARELEVHV 46344 G+D+ +D + + L +++ Sbjct: 274 TEGIDLPNVDVCIMLRPTQSLSLYL 298 >ref|NP_049952.1|putative helicase Length = 443 Score = 39.7 bits (91), Expect = 0.24 Identities = 15/85 (17%), Positives = 46/85 (54%) Frame = -3 Query: 46598 ESSVVFCNTKRETQQVAEALNAAGFSALALNGDLEQPDRDRILAMFANKSVSVLVATDVA 46419 + ++V+ ++ ++ V+ N G++++A++G RDR + F + ++++V ++ Sbjct: 214 KQAIVYTHSVEASESVSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDGKLTIMVNCELF 273 Query: 46418 ARGLDIDALDAVFNYQIARELEVHV 46344 G+D+ +D + + L +++ Sbjct: 274 TEGIDLPNVDVCIMLRPTQSLSLYL 298 >ref|NP_056709.1|putative helicase Length = 443 Score = 39.7 bits (91), Expect = 0.24 Identities = 15/85 (17%), Positives = 46/85 (54%) Frame = -3 Query: 46598 ESSVVFCNTKRETQQVAEALNAAGFSALALNGDLEQPDRDRILAMFANKSVSVLVATDVA 46419 + ++V+ ++ ++ V+ N G++++A++G RDR + F + ++++V ++ Sbjct: 214 KQAIVYTHSVEASESVSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDGKLTIMVNCELF 273 Query: 46418 ARGLDIDALDAVFNYQIARELEVHV 46344 G+D+ +D + + L +++ Sbjct: 274 TEGIDLPNVDVCIMLRPTQSLSLYL 298 >ref|NP_049618.1|gp60 topoisomerase II, large subunit, C-terminal region Length = 160 Score = 39.7 bits (91), Expect = 0.24 Identities = 21/66 (31%), Positives = 32/66 (48%) Frame = +1 Query: 197362 REEFNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGHVFIAQPPLYKIKR 197541 R + Y ++ IMTDAD DG L FF PEL E+G + + P+ + Sbjct: 23 RRSIKSSSMNYANVAIMTDADHDGLGSIYPSLLGFFSNWPELFEQGRIRFVKTPVIIAQV 82 Query: 197542 GKQETY 197559 GK++ + Sbjct: 83 GKKQEW 88 >ref|NP_046574.1|unknown Length = 422 Score = 39.7 bits (91), Expect = 0.24 Identities = 20/55 (36%), Positives = 32/55 (58%) Frame = -2 Query: 206979 GHRGNAMKPLTGIVITLNEQANIADCVRSLRRVCDEVIVVDSLSTDDTVAIAEAE 206815 G+ + +T +I NE I C+ S++ +E+IV+DS STDDTV I + + Sbjct: 47 GYEKSDTPTITCGIIVYNESKRIKKCLNSVKDDFNEIIVLDSYSTDDTVDIIKCD 101 >ref|NP_039621.1|gene III product Length = 434 Score = 39.3 bits (90), Expect = 0.31 Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 10/188 (5%) Frame = -1 Query: 265381 NDGDGITSDAIVNVGGI-EDGATWEYSIDGGDSWITGTGNSFELPEGDYDNGVVQVRQT- 265208 NDG S A G + E G + + GD+ TG G S GD G T Sbjct: 179 NDGTVCASSAWKPTGYVPESGESSSSPVKDGDTGGTGEGGSDT--GGDTGGGDTGGGSTG 236 Query: 265207 -DAAGNTSDLVTLGPVAVDQTAPVVNVDDLDAPINDPSPALSGAVSDPDATVTVTVNGDD 265031 D G+T T G T + +D+ A I+D SP++ AV D ++T + D Sbjct: 237 GDTGGSTGGGSTGGGSTGGSTGKSLTKEDVTAAIHDASPSIGDAVKD-----SLTEDNDQ 291 Query: 265030 YTAANNGDGTWTLAEGTVT--LNEGDNSISAVATDAAGNTSEPVNETIELD---TTAPG- 264869 D A +V+ +++G + D G +S+ E+D + A G Sbjct: 292 NDNQKKADEQSAKASASVSDAISDGMRGVGNFVDDLGGESSQYGIGNSEMDLSVSLAKGQ 351 Query: 264868 -GVDDDGN 264848 G+D +G+ Sbjct: 352 LGIDLEGH 359 >ref|NP_817477.1|gp27 Length = 946 Score = 38.9 bits (89), Expect = 0.41 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Frame = +1 Query: 407290 VLDPIVASLMEAQQIPGMAVALIGPKGTTIADYGVADRKTGTPVDDDTLFEIGXXXXXXX 407469 V+D IVA M PG+ + + P+G + YG++ TG P+ D F IG Sbjct: 79 VIDEIVAEGMATGAGPGVGLYVTSPQGYYLKTYGIS--TTGVPLTPDMHFRIGSATKPFT 136 Query: 407470 XXXXXXXXVEGELDLEAPVSRY-LPELEGSAFDR 407568 +G + LE + ++ PE + S DR Sbjct: 137 ATAVLMAIQDGLISLEDTIDQFDTPEFKLSDIDR 170 >ref|YP_164760.1|orf125 Length = 259 Score = 38.9 bits (89), Expect = 0.41 Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 1/111 (0%) Frame = -2 Query: 272031 IAGWAILLDYLFLPMVIWLIGAAYLHSAFPAVPTPLWLLAFIAVTT-VINILGLRLASVV 271855 I GW YLF W A + + A TPL LL FI T V+ +L + AS V Sbjct: 30 IKGWPQQNYYLF-----WFAMGAQIMTLVSAPITPLTLLTFIGTTLGVLCVLSINAASSV 84 Query: 271854 NSVMMLVQILVLVAFVGLSMHYVLGDPTQPFWSLTPFLGADSAATLPVLMA 271702 N ++ L+ + + +VG L Q + LT LPVL+A Sbjct: 85 NGILGLISAAIFI-YVGFKAKNYLSIGEQTAYVLT--------LDLPVLLA 126 >ref|NP_690769.1|ORF36 Length = 1018 Score = 38.9 bits (89), Expect = 0.41 Identities = 33/146 (22%), Positives = 58/146 (39%) Frame = +3 Query: 392016 DLATRTEQSVGNLQQSVASIAQLTESIQQTAQAAQRADELATHTAEAAVRGGEAVKDVVT 392195 D A + + + Q + T ++ +T A + EAA R V+ + Sbjct: 78 DAAIKKGKDIKETQTLARRLNNATAAMNKTQNALNSTTQRIKALEEAAKRASSRVRIMGE 137 Query: 392196 RMHAIAEAERRIGDIVGLIDDIAFQTNLLALNASVEXXXXXXXXXXXXXXXSEVRNLAGR 392375 RM +I R +G V + IAF L+L +V+ S+V+ ++G Sbjct: 138 RMDSIGGKMRSVGSSVAMTSGIAFGALALSLRDAVQ------VGIDFEKQMSKVQAISGG 191 Query: 392376 SATAANEIKTLIRDSGETVAAGVSQA 392453 SA +++ ++ G T SQA Sbjct: 192 SAAEIAKLREQAKELGATTVFTASQA 217 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,398,245,192 Number of Sequences: 14420 Number of extensions: 50203089 Number of successful extensions: 184783 Number of sequences better than 0.5: 84 Number of HSP's better than 0.5 without gapping: 13443 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 184291 length of database: 3,019,461 effective HSP length: 132 effective length of database: 1,116,021 effective search space used: 188673394239 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig71 (349,669 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 171 4e-41 ref|NP_944186.1|hypothetical protein 159 1e-37 ref|NP_945089.1|gp58 102 2e-20 ref|NP_899539.1|PhoH domain protein 93 2e-17 ref|NP_612844.1|Gp15 protein 87 7e-16 ref|NP_597931.1|PhoH-like protein 87 9e-16 ref|YP_006926.1|putative PhoH-like protein 87 1e-15 ref|NP_046584.1|putative transglycosylase 83 2e-14 ref|YP_195230.1|PhoH 75 3e-12 ref|NP_943827.1|gp49 72 2e-11 ref|YP_024453.1|putative PhoH-related protein 70 2e-10 ref|NP_112710.1|ORF47 69 2e-10 ref|NP_076626.1|endopeptidase 69 2e-10 ref|NP_663686.1|structural protein 69 3e-10 ref|NP_695158.1|minor capsid protein 68 6e-10 ref|NP_108727.1|minor structural protein 3 67 8e-10 ref|NP_058454.1|orf 16 66 2e-09 ref|NP_061640.1|phi PVL ORF 15 and 16 homologue 66 2e-09 ref|YP_195243.1|hypothetical protein 65 3e-09 ref|NP_803396.1|tail length tape measure protein 65 5e-09 ref|NP_046572.1|ABC transporter 62 3e-08 ref|NP_803346.1|tail fiber protein 61 7e-08 ref|NP_075512.2|hypothetical protein 60 2e-07 ref|NP_835564.1|hypothetical protein 59 2e-07 ref|NP_958615.1|77ORF001 59 2e-07 ref|NP_040602.1|Tail fiber protein 54 7e-06 ref|NP_818239.1|gp188 54 1e-05 ref|NP_064745.1|gp7 49 3e-04 ref|YP_024782.1|p54 49 4e-04 ref|NP_039722.1|predicted 14.5Kd protein 49 4e-04 ref|NP_046874.1|putative DNA primase 48 5e-04 ref|NP_543063.1|putative lambda repressor 47 8e-04 ref|NP_061531.1|integrase 47 0.001 ref|NP_720278.1|Int 47 0.001 ref|YP_006360.1|Int 47 0.001 ref|NP_059606.1|C2 47 0.001 ref|NP_059584.1|Int 47 0.001 ref|NP_047971.2|gp26 46 0.002 ref|NP_803852.1|ORF286 45 0.004 ref|NP_599058.1|integrase 45 0.005 ref|NP_075318.1|gp51 44 0.007 ref|NP_817647.1|gp58 43 0.016 ref|YP_024964.1|putative prophage repressor protein 43 0.020 ref|NP_852723.1|putative integrase 43 0.020 ref|NP_943806.1|gp28 42 0.035 ref|NP_777327.1|hypothetical protein 42 0.045 ref|NP_050128.1|putative DEAH-family helicase 41 0.059 ref|YP_025049.1|putative repressor protein 40 0.10 ref|NP_818340.1|gp39 40 0.13 ref|NP_817477.1|gp27 40 0.13 ref|NP_050999.1|P38 40 0.13 ref|NP_818091.1|gp15 40 0.17 ref|NP_944247.1|hypothetical protein 39 0.23 ref|NP_038317.1|ORF16 39 0.29 ref|NP_445687.1|putative helicase 39 0.38 ref|NP_061653.1|transposase 39 0.38 ref|NP_817947.1|gp96 39 0.38 ref|NP_536371.1|putative tail length tape measure protein 39 0.38 ref|NP_944130.1|UvsW RNA-DNA and DNA-DNA helicase 39 0.38 >ref|NP_945090.1|gp59 Length = 429 Score = 171 bits (433), Expect = 4e-41 Identities = 117/413 (28%), Positives = 205/413 (49%), Gaps = 10/413 (2%) Frame = -2 Query: 61479 SQETDASASRPLNRRDVKVLSLSALGGALEFYDFIIFVYFATVVGQLFFPP--EMPEWLR 61306 ++E SAS +RR V + +G E++DFI + +F+ ++ +LFFP + L Sbjct: 7 AREAAPSASSDTHRRAVIAV---IVGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLL 63 Query: 61305 QIQTFGIFAAGYLARPLGGIIMAHFGDLLGRKKMFTLSIFLMSVPTLLIGVMPTYDTLGY 61126 + T G+ G+ RP+GGI++ D +GR+ T++I LM+ T +IG PTY G Sbjct: 64 SVSTIGV---GFFMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGL 120 Query: 61125 AAPLLLVALRILQGAAVGGEVPGAWVFVTEHVKRHHVGFACGTLSAGLVSGILIGSLMSA 60946 APL++V R+LQG + GGE+ GA ++ E V G+ + A + I++ S+++ Sbjct: 121 GAPLMIVVARLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAV 180 Query: 60945 FIKTTYSDAELAAYAWRIPFLIGGVFGLLAVYLRRWLHETPVFAEMQQKKALAEELPVKS 60766 FI + ++ ++ WRIPFL+G G + +Y+R L++ A+ + L E PV Sbjct: 181 FIVKCLDEQQIESWGWRIPFLLGLGLGPVGIYIRSRLNDPGFPAD----ERLGECAPVVE 236 Query: 60765 VLRNHLPSVVLSMGVTWILTAAIVVVILMTPSLLETRYGLDASLANVYAILGVVVGSLAS 60586 V+R+ ++ G+ T V++ P+ L +S + ++G + + Sbjct: 237 VVRSFSREALVGFGLVVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVT 296 Query: 60585 ---GWCADRLGSGPTIAFWGVLLAISYWVMMTTVSTHPEWLTPLYILSGFAVGIVGVV-P 60418 G +D G +A ++ ++ + + ++ P T L F + I P Sbjct: 297 PLIGHLSDLFGRRWFLAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGP 356 Query: 60417 TIAVKS--FPAVVRFTGLSFSYNVAYAIFGGFTPIVV--SVLMTVHPLFPAVY 60271 +A S FP V TG+S SYN+A FGGF+ ++ ++ T + L PA Y Sbjct: 357 ILAALSDMFPDGVLSTGISISYNLAVITFGGFSAAIITWAIATTHNNLAPAFY 409 >ref|NP_944186.1|hypothetical protein Length = 347 Score = 159 bits (402), Expect = 1e-37 Identities = 87/187 (46%), Positives = 122/187 (65%), Gaps = 1/187 (0%) Frame = -2 Query: 349527 LDVYRVGGAVRDARLGWPVTDEDWVVVGATPEALTARGFVPVGRDFPVFLHPVTHEEYAL 349348 +++Y VGGAVRD + D D+VVVG+T + + A+G+ VG DFPV+L + +EYAL Sbjct: 1 MNIYLVGGAVRDMVMNREPKDRDYVVVGSTHDEMIAKGYKQVGADFPVYLDHLG-QEYAL 59 Query: 349347 ARTERKQGHGYTGFVVHASPEVTLEEDLARRDLTINAMAEDRDGRLVDPFDGRQDLDARV 349168 ARTER G GY FV +P VTLE+DL RRD T+NAMA +G ++DP++G+QD+ RV Sbjct: 60 ARTERSTGKGYNDFVTDFNPNVTLEQDLKRRDFTMNAMALGMNGVVIDPYNGQQDIKERV 119 Query: 349167 LRHVS-EAFVEDPLRVLRTARFWARYRELGFVIADDTKRLMRGLCDNGEIAHLVAERVWQ 348991 + V+ +AF EDP+RVLR RF ARY F ++ T + +G + HL +ER+W Sbjct: 120 VNVVNPQAFHEDPVRVLRACRFAARY---DFRLSTLTMECILRCIKDGRMDHLTSERIWL 176 Query: 348990 ETVKALG 348970 E K+ G Sbjct: 177 EFEKSFG 183 >ref|NP_945089.1|gp58 Length = 297 Score = 102 bits (255), Expect = 2e-20 Identities = 89/300 (29%), Positives = 136/300 (45%), Gaps = 6/300 (2%) Frame = +3 Query: 105870 PLNALRAFVEAAREGSFKTAAARLNVTPGAISRQVKQLETRLGIVLFERHSHGVSVTQAG 106049 PL L F AAR G+F AA LNV GA+S+QV +LET LG LF R + + +T+AG Sbjct: 8 PLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAG 67 Query: 106050 RQLAHDVDAGLERIAAGVSAASERARDVGTLRVSAPPSFAQVWLLPRLADFEARQGQLDI 106229 +Q A V A L +A + + +L ++ A ++L R+A+F A ++ + Sbjct: 68 QQYADRVHAILAD-CVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 106230 TLDANQAIISPSWQHGSARLAIRYGRG-PWAGVDSHRLFDDKLFPVCAPALLERSPIATP 106406 + + + + + + Y R P G+ + + + CAP L + P Sbjct: 127 RILVREGVF--NLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRV-PP 183 Query: 106407 ADLLAHPLLDVVWESRQNVAFPGWRDWF-----DAAGLPDRTLPIQQRFSLYGLALDQAI 106571 DL+ LL + RQ + GWRDWF + P RT+ Y + L A+ Sbjct: 184 QDLMEATLLVAEEQQRQ---WMGWRDWFRLTVGEIGFRPARTISANS----YPVLLQLAL 236 Query: 106572 AGRGVMLANPAVVADRLASGVLVRPFGDRHVIDSPFTYDLILPSTGHAPPAVRGFIDWLL 106751 G G +L ++ + SG LV D H Y +I P+ PAV F +WLL Sbjct: 237 HGHGAILGWKHMITPLVESGKLVLA-SDAHA-SFGGAYQVIWPADRRDTPAVTMFREWLL 294 Score = 83.2 bits (204), Expect = 1e-14 Identities = 67/288 (23%), Positives = 120/288 (41%), Gaps = 2/288 (0%) Frame = +2 Query: 285413 LKVFAISARHLSFTRAAEELHVTTGAVSQQIKQLETRLGFKLFRRLPRRLELTDEGQRLA 285592 L F +ARH +FTRAAEEL+V GAVS+Q+ +LET LG LF R + L LT GQ+ A Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71 Query: 285593 AVVDQAYDAVGQEVRRLRTGVMSGVLRLRCVPSFLAKWLMPRLTRLQARFPDIELHVASE 285772 V + + L + C +L R+ A P++ + + Sbjct: 72 DRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILVR 131 Query: 285773 DSNLSLREGEFELAI-DLNDGRYAGFQITTLMDEEIFAVCSXXXXXXXXXXXXXXXXGYY 285949 + +L EF++ + + D G T ++ E++ A C+ Sbjct: 132 EGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVPPQDLMEATL 191 Query: 285950 PLLHD-VTAWRGSHDYAEWEHYLHALGAASVNVQRGYTFNRNHLTVEAAIAGMGVAIARR 286126 + + W G D+ + +G R + N + ++ A+ G G + + Sbjct: 192 LVAEEQQRQWMGWRDW-----FRLTVGEIGFRPARTISANSYPVLLQLALHGHGAILGWK 246 Query: 286127 TLITNELDTGALIAPFAGTVATGKSYGLVYHPGALDDRRVRAVHDWIV 286270 +IT +++G L+ + G +Y +++ D V +W++ Sbjct: 247 HMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLL 294 Score = 58.5 bits (140), Expect = 4e-07 Identities = 68/289 (23%), Positives = 110/289 (38%), Gaps = 10/289 (3%) Frame = +3 Query: 282090 FIEVARLGTFSAAARHLQVSTSHVSRLIGQLKSQLGXXXXXXXXXXXXXXDAGALYYRHC 282269 F AR G F+ AA L V+ VS+ + +L++ LG AG Y Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRV 74 Query: 282270 RHLFDGFREAEEAIVDFQSRPKGTLRLTCATTFGERYIAPLVNDFQCRHPQLEIDMHFTN 282449 + EA ++ Q+ +L + CA+ ++A + +F HP++ + + Sbjct: 75 HAILADCVEATALVMKEQT--PHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILVRE 132 Query: 282450 RRVELVEEGFDVAIRMGVLRD---SSLIARRLCERREYVVGSPAYFE-RAAPPHSLAELP 282617 L FD+ + +RD + + + +P + R PP L E Sbjct: 133 GVFNLNAAEFDIGVYY--IRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVPPQDLMEAT 190 Query: 282618 ------HHNCLRGSRDSWLFEINGHRREVRVDGRWRANSGPALLDAVLKGLGLAQLPDYY 282779 G RD W F + R ANS P LL L G G + Sbjct: 191 LLVAEEQQRQWMGWRD-W-FRLTVGEIGFRPARTISANSYPVLLQLALHGHGAILGWKHM 248 Query: 282780 VTPHLARGELVPVLTAYQFTDTAVWAIYPRHRHLSPKVRQFVDFLVDHL 282926 +TP + G+LV A+ A I+P R +P V F ++L+ H+ Sbjct: 249 ITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLLTHV 297 Score = 55.5 bits (132), Expect = 3e-06 Identities = 66/289 (22%), Positives = 99/289 (34%), Gaps = 5/289 (1%) Frame = -3 Query: 23852 LPSLTALRTFECXXXXXXXXXXXAELCVTDSAVSHQVRQLEEQLGATLFVRRGRHLQPTP 23673 LP L L F+ EL V AVS QV +LE LG TLFVR + L T Sbjct: 6 LPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTR 65 Query: 23672 QARRLLHSLQQAFERVGEACETIAAPDTQAALQVAVPAELAQKWLVGRLDDFCRRYPHID 23493 ++ + EA + T +L +A + A +L R+ +F +P + Sbjct: 66 AGQQYADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVS 125 Query: 23492 LHLHARAYDVQDVGPDLDLAIIYGAGPADAHELFVRPLPALHFFPVCSPGLFNAGGLTCP 23313 + + R + D+ + Y + + A C+P F AG P Sbjct: 126 VRILVREGVFNLNAAEFDIGVYY-IRDVPPPGIAGTAIVAEDVHAYCAP-TFLAGRRVPP 183 Query: 23312 ADLAGCRLLHDDQDGGTWAAW-----LATHAGDARAGRNLYFEHXXXXXXXXXXXXXXXX 23148 DL LL ++ W W L R R + Sbjct: 184 QDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAIL 243 Query: 23147 GDVLTASEDLTRGRLVRPFAASVGSLGQYALVCDRQRLERPAVAHFIDW 23001 G + + G+LV A G Y ++ R + PAV F +W Sbjct: 244 GWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREW 292 Score = 40.4 bits (93), Expect = 0.10 Identities = 50/199 (25%), Positives = 80/199 (40%), Gaps = 3/199 (1%) Frame = -1 Query: 90808 AVVDHGGFARAAEAVHKSPSTLNHAVHKLEEQLGIRVLEPVGRQVRLTESGAMLLRRARQ 90629 A HG F RAAE ++ + ++ V KLE LG + + + LT +G R Sbjct: 17 AAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHA 76 Query: 90628 LLESAEALEDVAGRLAEGLEAEVVLAVDQIFPPDALAHALDAVSREYPHVRVQLHETVLN 90449 +L A+ +E A + E + +A LA + S E+P V V++ ++ Sbjct: 77 IL--ADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRI---LVR 131 Query: 90448 GGIEMLYDGRADL---VVSGIAAQGFLGEPLVNVTFLAVSHPDHPLQHLGRELDLRDLEQ 90278 G+ L D+ + + G G +V A P GR + +DL Sbjct: 132 EGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTF---LAGRRVPPQDL-M 187 Query: 90277 HRQLVVRDSALRQSMDAGW 90221 L+V + RQ M GW Sbjct: 188 EATLLVAEEQQRQWM--GW 204 >ref|NP_899539.1|PhoH domain protein Length = 235 Score = 92.8 bits (229), Expect = 2e-17 Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 10/189 (5%) Frame = +1 Query: 126805 GNAGTGKTYM--TLAAAFQQTLDSKRFERIVFTRAPIPMGEDIGFLPGTEEEKMSPWMGA 126978 G+AGTGKT++ TL A D F + + + GE++G+LPGT EEKM PW+ Sbjct: 46 GSAGTGKTWLATTLGADMYSAFDYTEF---IILKPTLSCGEELGYLPGTLEEKMEPWIQT 102 Query: 126979 FHDNMDNLLRDEQHGGSSWSDGATRQLIGSRVQIRSPSFMRGRTLSDTFLIIDEAQNFTP 127158 + + L ++ W+ R+ F+RG+T + F+++DEAQN T Sbjct: 103 VTQPLKDRLGADKFK-CDWN---------KRIHAEPIQFVRGKTFDNCFIVVDEAQNLTK 152 Query: 127159 KQLKSLITRAGRNTKLVLLGNVGQIDTPYL----TANTCGMAYAVERFRDWPHAG----H 127314 ++++++TR G NTK+V G++ Q D + G+A+ V R+ +G Sbjct: 153 TEIQTIMTRIGENTKMVFCGDLKQDDHKMIYRTGQKEISGLAWMVNEIRNQQRSGIEIIE 212 Query: 127315 ITLKSVERS 127341 T K V RS Sbjct: 213 FTNKDVVRS 221 >ref|NP_612844.1|Gp15 protein Length = 983 Score = 87.4 bits (215), Expect = 7e-16 Identities = 46/89 (51%), Positives = 53/89 (59%) Frame = +1 Query: 93199 HRGTDFAMRTGTPVDAPAAGRVIKSAYQAGGAGNYLVIRHDNGYKTRYMHLSKRLVSEGD 93378 H G DF GTPV G VIK G YL + H G T Y H S+ LV+EGD Sbjct: 878 HDGIDFGTPIGTPVRVSKDGVVIKRRELTTSYGKYLFVDHGGGLITIYAHNSELLVNEGD 937 Query: 93379 RVEMGQKIALSGNTGGSTGPHLHYEVMVN 93465 RV+ GQ IA +GNTG STGPHLH+E+ VN Sbjct: 938 RVKRGQIIAKTGNTGNSTGPHLHWELRVN 966 >ref|NP_597931.1|PhoH-like protein Length = 384 Score = 87.0 bits (214), Expect = 9e-16 Identities = 52/148 (35%), Positives = 78/148 (52%) Frame = +1 Query: 126793 VTIAGNAGTGKTYMTLAAAFQQTLDSKRFERIVFTRAPIPMGEDIGFLPGTEEEKMSPWM 126972 V I G AGTGKTY+T A +K ++IV TR + +G+++GFL G EK PW Sbjct: 198 VFILGPAGTGKTYVTATYA-SDLYTTKEIDKIVITRPHVAVGKELGFLKGDLTEKTMPWA 256 Query: 126973 GAFHDNMDNLLRDEQHGGSSWSDGATRQLIGSRVQIRSPSFMRGRTLSDTFLIIDEAQNF 127152 D + E+H G + + +++ + MRGR+ + F+I+DE QN Sbjct: 257 LPVLDVL------EKHLGKGAVETGIKN---GNIEMAPLALMRGRSFDNAFIIVDETQNI 307 Query: 127153 TPKQLKSLITRAGRNTKLVLLGNVGQID 127236 + +LK L+TR G T +VL G+ Q D Sbjct: 308 STHELKMLLTRVGEGTTIVLNGDAQQSD 335 >ref|YP_006926.1|putative PhoH-like protein Length = 250 Score = 86.7 bits (213), Expect = 1e-15 Identities = 50/181 (27%), Positives = 94/181 (51%), Gaps = 1/181 (0%) Frame = +1 Query: 126805 GNAGTGKTYMTLAAAFQQTLD-SKRFERIVFTRAPIPMGEDIGFLPGTEEEKMSPWMGAF 126981 G GTGKT++ A Q+ +D E+++ R P+G+ +G LPG EK+ PW+ Sbjct: 66 GEPGTGKTFIPSVLAAQELVDIHSDIEQVILVRPNEPLGKSLGMLPGDLAEKLEPWLEPI 125 Query: 126982 HDNMDNLLRDEQHGGSSWSDGATRQLIGSRVQIRSPSFMRGRTLSDTFLIIDEAQNFTPK 127161 D M + D + G RQ +++ + RGRT +++++I+DEAQN + + Sbjct: 126 ADGMKWAIGDHAYKGY-----VERQ----KIKFLAIEHARGRTFNNSYVIVDEAQNISVE 176 Query: 127162 QLKSLITRAGRNTKLVLLGNVGQIDTPYLTANTCGMAYAVERFRDWPHAGHITLKSVERS 127341 + L+TR G++ +L++ G++ Q D G+A +E + + +A ++ ++ Sbjct: 177 AMVCLLTRVGQDCRLIICGDIAQKD----IKGDSGLALLMEVYEKYENAPFSMIELIDNV 232 Query: 127342 R 127344 R Sbjct: 233 R 233 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 82.8 bits (203), Expect = 2e-14 Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 1/152 (0%) Frame = +1 Query: 93118 YPFEGHYRISSPFNLRRHHPITGRISPHRGTDFAMRTGTPVDAPAAGRVIKSAYQAGGAG 93297 Y +R+SS + + R SPH+GTDFA + GT + + +G+V + Y + AG Sbjct: 1556 YTNNSAFRVSSKYGQQESGL---RSSPHKGTDFAAKAGTAIKSLQSGKVQIAGY-SKTAG 1611 Query: 93298 NYLVIRHDNGYKTRYMH-LSKRLVSEGDRVEMGQKIALSGNTGGSTGPHLHYEVMVNNRA 93474 N++VI+ D+G +YMH L+ V G V+ GQ I G+TG STG HLH ++ N + Sbjct: 1612 NWVVIKQDDGTVAKYMHMLNTPSVKAGQSVKAGQTIGKVGSTGNSTGNHLHLQIEQNGKT 1671 Query: 93475 VDAMRVKLPENQSLEGKALAAFQKQSKPLLAK 93570 +D + S+ + A ++Q AK Sbjct: 1672 IDPEKYMQGIGTSISDASQAEAERQQGIAQAK 1703 >ref|YP_195230.1|PhoH Length = 250 Score = 75.5 bits (184), Expect = 3e-12 Identities = 46/145 (31%), Positives = 78/145 (53%), Gaps = 1/145 (0%) Frame = +1 Query: 126805 GNAGTGKTYMTLAAAFQQTLDSKR-FERIVFTRAPIPMGEDIGFLPGTEEEKMSPWMGAF 126981 G AGTGKT++ L A + LD ++++ R+ + E IGFLPGT E+K S + + Sbjct: 58 GCAGTGKTFVALYLALKDVLDEYTPYDKVYIVRSLVATRE-IGFLPGTHEDKASLYQIPY 116 Query: 126982 HDNMDNLLRDEQHGGSSWSDGATRQLIGSRVQIRSPSFMRGRTLSDTFLIIDEAQNFTPK 127161 + + ++ E S+ + S SF+RG TL ++ +I+DE QN Sbjct: 117 KNMVKSMF--EMPDDPSFEMLYENLKQQETISFWSTSFLRGSTLDNSIIIVDECQNLNFH 174 Query: 127162 QLKSLITRAGRNTKLVLLGNVGQID 127236 +L S++TR G+++K++ G+ Q D Sbjct: 175 ELDSIMTRVGQDSKIIFCGDANQSD 199 >ref|NP_943827.1|gp49 Length = 429 Score = 72.4 bits (176), Expect = 2e-11 Identities = 51/117 (43%), Positives = 61/117 (52%), Gaps = 8/117 (6%) Frame = +1 Query: 93130 GHYRISSPFNLRRHHPITGRISPHRGTDFAMRTGTPVDAPAAGRVIKSAY--QAGGAGNY 93303 G Y +SS F R S HRG DFA + GTP+ A G V AY +A G G + Sbjct: 4 GTYTLSSGFGPRWG-------SQHRGLDFAAKDGTPIYAAQGGTV---AYIGRADGFGQW 53 Query: 93304 LVIRH---DNGYKTRYMHLSKRLVS---EGDRVEMGQKIALSGNTGGSTGPHLHYEV 93456 +VI H D G T Y H+ + +G RVE GQ IA G G STGPHLH+EV Sbjct: 54 IVIDHPAADGGGTTVYGHMWDAFATGLRQGQRVEAGQLIAYVGTNGQSTGPHLHFEV 110 >ref|YP_024453.1|putative PhoH-related protein Length = 246 Score = 69.7 bits (169), Expect = 2e-10 Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 5/156 (3%) Frame = +1 Query: 126784 IDLVTIAGNAGTGKTYMTLAAAFQQTLDSKRFERIVFTRAPIPMGEDIGFLPGTEEEKMS 126963 ++++ AGTGKT ++A A+ L+ R ++VF +P+ ED+G PG + EK Sbjct: 51 VEILWNESQAGTGKTMCSVACAYADYLNKNR--KLVFIISPV--SEDLGSRPGNQTEKEM 106 Query: 126964 PWMGAFHDNMDNLLRDEQHGGSSW---SDGATRQLIGSR-VQIRSPSFMRGRTLSDTFLI 127131 + HD + L + + + D +G V S F+RG L D +I Sbjct: 107 AYFMGLHDALIELNMNPEQQITEMLMMEDNVKEDKLGDCWVSQISHLFLRGGNLRDATII 166 Query: 127132 IDEAQNFTPKQLKSLITRA-GRNTKLVLLGNVGQID 127236 I+EAQNF +LK ++TR +N+ +++ GN QID Sbjct: 167 INEAQNFKRSELKKVLTRVHTKNSTVIVEGNFKQID 202 >ref|NP_112710.1|ORF47 Length = 918 Score = 69.3 bits (168), Expect = 2e-10 Identities = 48/117 (41%), Positives = 59/117 (50%), Gaps = 11/117 (9%) Frame = +1 Query: 93142 ISSPFNLR-----RHHPITGRISPHRGTDFAM-RTGTPVDAPAAGRVIKSAYQAGGA--- 93294 ISSP + R PITG H D TP+ A G+V+ QAG Sbjct: 786 ISSPITVTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASGDGQVV----QAGSNYYD 841 Query: 93295 --GNYLVIRHDNGYKTRYMHLSKRLVSEGDRVEMGQKIALSGNTGGSTGPHLHYEVM 93459 GNY VI+H +G T Y H S+ VS G V+ GQ+I L G TG TGPHLH++ M Sbjct: 842 WYGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFM 898 >ref|NP_076626.1|endopeptidase Length = 894 Score = 69.3 bits (168), Expect = 2e-10 Identities = 48/117 (41%), Positives = 59/117 (50%), Gaps = 11/117 (9%) Frame = +1 Query: 93142 ISSPFNLR-----RHHPITGRISPHRGTDFAM-RTGTPVDAPAAGRVIKSAYQAGGA--- 93294 ISSP + R PITG H D TP+ A G+V+ QAG Sbjct: 762 ISSPITVTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASGDGQVV----QAGSNYYD 817 Query: 93295 --GNYLVIRHDNGYKTRYMHLSKRLVSEGDRVEMGQKIALSGNTGGSTGPHLHYEVM 93459 GNY VI+H +G T Y H S+ VS G V+ GQ+I L G TG TGPHLH++ M Sbjct: 818 WYGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFM 874 >ref|NP_663686.1|structural protein Length = 908 Score = 68.6 bits (166), Expect = 3e-10 Identities = 48/117 (41%), Positives = 59/117 (50%), Gaps = 11/117 (9%) Frame = +1 Query: 93142 ISSPFNLR-----RHHPITGRISPHRGTDFAM-RTGTPVDAPAAGRVIKSAYQAGGA--- 93294 ISSP + R PITG H D TP+ A G+V+ QAG Sbjct: 776 ISSPITVTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASNDGQVV----QAGSNYYD 831 Query: 93295 --GNYLVIRHDNGYKTRYMHLSKRLVSEGDRVEMGQKIALSGNTGGSTGPHLHYEVM 93459 GNY VI+H +G T Y H S+ VS G V+ GQ+I L G TG TGPHLH++ M Sbjct: 832 WYGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFM 888 >ref|NP_695158.1|minor capsid protein Length = 1608 Score = 67.8 bits (164), Expect = 6e-10 Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Frame = +1 Query: 93199 HRGTDFAMRTGTPVDAPAAGRVIKSAYQAGGAGNYLVIRHDNG-YKTRYMHLSKRLVSEG 93375 H+G DFA GTP+ A G V+++ A G GN++VI+ T Y H+ + V G Sbjct: 1257 HKGIDFAAPLGTPIPAQYGGTVVQAG-PASGFGNWVVIKPSGASVDTIYGHMKRMKVKTG 1315 Query: 93376 DRVEMGQKIALSGNTGGSTGPHLHYEV 93456 V+ GQ IA G+ G S+GPH+HYE+ Sbjct: 1316 QHVKAGQIIAWVGSEGQSSGPHVHYEL 1342 >ref|NP_108727.1|minor structural protein 3 Length = 906 Score = 67.4 bits (163), Expect = 8e-10 Identities = 41/100 (41%), Positives = 53/100 (53%), Gaps = 2/100 (2%) Frame = +1 Query: 93166 RHHPITGRISPHRGTDFAM-RTGTPVDAPAAGRVIKSAYQA-GGAGNYLVIRHDNGYKTR 93339 R PITG H D TP+ A G+V+++ GNY VI+H +G T Sbjct: 787 RTSPITGAQEFHNAMDLVNGNPTTPILASNDGQVVQAGSNYYNWYGNYTVIKHADGLYTG 846 Query: 93340 YMHLSKRLVSEGDRVEMGQKIALSGNTGGSTGPHLHYEVM 93459 Y H S+ VS G V+ GQ+I L G TG TGPHLH++ M Sbjct: 847 YAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFM 886 >ref|NP_058454.1|orf 16 Length = 539 Score = 66.2 bits (160), Expect = 2e-09 Identities = 39/96 (40%), Positives = 50/96 (52%) Frame = +1 Query: 93199 HRGTDFAMRTGTPVDAPAAGRVIKSAYQAGGAGNYLVIRHDNGYKTRYMHLSKRLVSEGD 93378 H G DF PV + GR + GG G ++ I + Y HLSK V G Sbjct: 414 HEGLDFDY-IYEPVPSTINGRAQVMPFHNGGYGKWVKIVK-GALEVIYAHLSKYKVKTGQ 471 Query: 93379 RVEMGQKIALSGNTGGSTGPHLHYEVMVNNRAVDAM 93486 +V +GQ + +SGNTG STGPHLHYE+ N R D + Sbjct: 472 QVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPL 507 >ref|NP_061640.1|phi PVL ORF 15 and 16 homologue Length = 1313 Score = 65.9 bits (159), Expect = 2e-09 Identities = 39/96 (40%), Positives = 50/96 (52%) Frame = +1 Query: 93199 HRGTDFAMRTGTPVDAPAAGRVIKSAYQAGGAGNYLVIRHDNGYKTRYMHLSKRLVSEGD 93378 H G DF PV + GR + GG G ++ I + Y HLSK V G Sbjct: 1188 HEGLDFDY-IYEPVPSTINGRAQVMPFHNGGYGKWVKIVK-GALEVIYAHLSKYKVKTGH 1245 Query: 93379 RVEMGQKIALSGNTGGSTGPHLHYEVMVNNRAVDAM 93486 +V +GQ + +SGNTG STGPHLHYE+ N R D + Sbjct: 1246 QVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPL 1281 >ref|YP_195243.1|hypothetical protein Length = 749 Score = 65.5 bits (158), Expect = 3e-09 Identities = 46/115 (40%), Positives = 58/115 (50%), Gaps = 9/115 (7%) Frame = +1 Query: 93136 YRISSPFNLRRHHPITGRISPHRGTDFAMRTGTPVDAPAAGRVIKSAYQAGGAGNYLVIR 93315 Y+I+S F RR P + H G D+ GT + GRV K A G + I Sbjct: 541 YQITSRFG-RRASPGGVGSTNHMGIDYGTPQGTKLAIKKPGRVQKIVVPAPGNMGEVHIV 599 Query: 93316 HDNGYKTRYMHLSKRLVSEGDRVEMGQKIALSGNTGG---------STGPHLHYE 93453 HD+G +TRY+HLSK V +G +V G L G TGG STGPHLH+E Sbjct: 600 HDDGTETRYLHLSKVAVRQGAQVVAG---TLLGETGGEPGTPGAGPSTGPHLHFE 651 >ref|NP_803396.1|tail length tape measure protein Length = 1550 Score = 64.7 bits (156), Expect = 5e-09 Identities = 39/96 (40%), Positives = 49/96 (51%) Frame = +1 Query: 93199 HRGTDFAMRTGTPVDAPAAGRVIKSAYQAGGAGNYLVIRHDNGYKTRYMHLSKRLVSEGD 93378 H G DF PV + GR GG G ++ I + Y HLSK V G Sbjct: 1189 HEGLDFDY-IYEPVPSTINGRAQVMPVHNGGYGKWVKIVK-GALEVIYAHLSKYKVKTGQ 1246 Query: 93379 RVEMGQKIALSGNTGGSTGPHLHYEVMVNNRAVDAM 93486 +V +GQ + +SGNTG STGPHLHYE+ N R D + Sbjct: 1247 QVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPL 1282 >ref|NP_046572.1|ABC transporter Length = 705 Score = 62.0 bits (149), Expect = 3e-08 Identities = 75/307 (24%), Positives = 132/307 (42%), Gaps = 20/307 (6%) Frame = -3 Query: 218081 SDTFHLSAVNWSNIMMLGAIGLVFFLANGLGWANTNVAATYSL---TLLFLRTPLIQAVG 217911 + TF ++ SN ++ G I F + + W T S+ TLLF+ T + Sbjct: 379 NSTFSVAKAVISNEILKGLIQNSFTII--ILWVGTRQVLNDSMSLGTLLFINTLAAFLLS 436 Query: 217910 ALPTLLSAQ-------VAFNKLKDLELAGYRAEFGDSAAHGDW-QTLELRGVTFAYAAGE 217755 +L +LS Q VA + D+ + + ++ D+ Q ++ T G Sbjct: 437 SLDRILSMQSDLQQAHVASIRFFDVVNYPVQQDSNENLTELDFIQNIK----TVNLNIGA 492 Query: 217754 HGRGFEVGPVDLTLSRGELVFLIGGNGSGKSTLARLLTGLYQPASGDILIDGQPVDAEGW 217575 + V ++L L R + V +IG +G+GKST A+ L+ LY+ I ++G ++ Sbjct: 493 DPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDH 552 Query: 217574 HAFRSRFAAVFTDFHLF------DRVMG---PGGETPDTTLAESWIERLGMGEKLHFDGW 217422 + R R + + LF + MG E + + E + +K + Sbjct: 553 LSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKL 612 Query: 217421 RVTNTQLSQGQRKRLALLLAVAEQRDILLLDEWAADQDPQFRRIFYRELLPMLRDSGKTV 217242 + LS GQ++RLAL A+ Q +L+LDE ++ DP ++ Y L M + Sbjct: 613 SENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM----DCLI 668 Query: 217241 FAISHDD 217221 I+H+D Sbjct: 669 ILITHND 675 Score = 59.7 bits (143), Expect = 2e-07 Identities = 51/211 (24%), Positives = 102/211 (48%), Gaps = 7/211 (3%) Frame = +2 Query: 15041 LDGVDLDIRAGEFFTLLGPSGCGKTTLLRILAGLEEPDDGSLVVGGKNVTEVP--PHRRS 15214 ++ ++L + + ++G SG GK+T + L+ L + D S+ + G ++ R+ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 15215 VNTVFQSYALFPHLSVRENLAFGLKMRGMPAAERHVKVDEIADFI-----KLGDLVDRHV 15379 + + ++ LF +++ENL G ++ E + + +FI + + + Sbjct: 559 IVYIDENPFLFKG-TIKENLCMG-EIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG 616 Query: 15380 DQLSGGQRQRIALARALICEPDVLLLDEPLSALDAGLRSQLQVELLRVQKRLGMTFVFVT 15559 LS GQ+QR+ALARA++ +P VL+LDE LS +D ++L E L R+ + +T Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPD-NTKLIYETLH---RMDCLIILIT 672 Query: 15560 HDQQEAMVMSDRIAVLNGGTIQQVGAPREVY 15652 H+ + ++ N I+ + + Y Sbjct: 673 HNDPSNFKYNKKLVFRNNRIIESSYSENKEY 703 Score = 50.8 bits (120), Expect = 7e-05 Identities = 48/195 (24%), Positives = 98/195 (50%), Gaps = 7/195 (3%) Frame = -2 Query: 236028 LMGENGAGKSTLLKVLSGVNRPSSGQLWIDGQAHVFANAREALAHGIAIIYQELTLSPNL 235849 ++GE+G GKST K LS + + ++++G + N + L+ I+Y + +P L Sbjct: 514 IIGESGTGKSTFAKSLSKLYKVPDKSIYLNG---LDINRYDHLSIRKRIVY--IDENPFL 568 Query: 235848 ---SVAENLLLGQLPERRGFIDRRTMKARAREILEELGEGDIDPATKVRE----LSIGQQ 235690 ++ ENL +G++ ++ I+ + ++ E + L D + K+ E LS GQ+ Sbjct: 569 FKGTIKENLCMGEIFDQNE-IENACIMSQCHEFICNL---DKQYSYKLSENGSNLSTGQK 624 Query: 235689 QMIEIGRALLRDARIIAFDEPTSSLSVQETRQLKRIVARLRDEGRVVLYVTHRMEEVFEM 235510 Q + + RA+L +++ DE S++ T+ + + R+ +++ +TH F+ Sbjct: 625 QRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM---DCLIILITHNDPSNFKY 681 Query: 235509 CDAVTVFRDGRHIRT 235465 + VFR+ R I + Sbjct: 682 -NKKLVFRNNRIIES 695 >ref|NP_803346.1|tail fiber protein Length = 2066 Score = 60.8 bits (146), Expect = 7e-08 Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Frame = +1 Query: 93199 HRGTDFAMRTGTPVDAPAAGRVIKSAYQAGGAGNYLVIRHDNGYKTRYMHLSKRLVSEGD 93378 H G DF M TGT + A G + + G GN + I+ YMHLSK+L +G Sbjct: 1707 HYGIDFGMPTGTNIYAVKGG-IADKVWTDYGGGNSIQIKTGANEWNWYMHLSKQLARQGQ 1765 Query: 93379 RVEMGQKIALSGNTGGST-GPHLHYEVM 93459 R++ GQ I SG TG G HLH+++M Sbjct: 1766 RIKAGQLIGKSGATGNFVRGAHLHFQLM 1793 >ref|NP_075512.2|hypothetical protein Length = 2067 Score = 59.7 bits (143), Expect = 2e-07 Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Frame = +1 Query: 93199 HRGTDFAMRTGTPVDAPAAGRVIKSAYQAGGAGNYLVIRHDNGYKTRYMHLSKRLVSEGD 93378 H G DF M +GT V A G + + G GN + I+ YMHLSK+L +G Sbjct: 1708 HYGIDFGMPSGTNVYAVKGG-IADKVWTDYGGGNSIQIKTGANEWNWYMHLSKQLARQGQ 1766 Query: 93379 RVEMGQKIALSGNTGGST-GPHLHYEVM 93459 R++ GQ I SG TG G HLH+++M Sbjct: 1767 RIKAGQLIGKSGATGNFVRGAHLHFQLM 1794 >ref|NP_835564.1|hypothetical protein Length = 1509 Score = 59.3 bits (142), Expect = 2e-07 Identities = 44/133 (33%), Positives = 58/133 (43%), Gaps = 2/133 (1%) Frame = +1 Query: 93088 GQSLDPAFNRYPFEGHYRISSPFNLRRHHPITGRISPHRGTDFAMRTGTPVDAPAAGRVI 93267 G LDP Y HY ++ + P H G DF V P GR+ Sbjct: 1117 GGILDPDKINY----HYGRTAAYTAATGRPF------HEGVDFPF-VYQEVRTPMGGRLT 1165 Query: 93268 KSAYQAGGAGNYLVIRHDNGYKTRYMHLSKRLVS--EGDRVEMGQKIALSGNTGGSTGPH 93441 + + +GG GNY+ I + HL S G V+ G + L+GNTG STGPH Sbjct: 1166 RMPFMSGGYGNYVKIT-SGVIDMLFAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPH 1224 Query: 93442 LHYEVMVNNRAVD 93480 LH+E+ N R D Sbjct: 1225 LHFEMRRNGRHFD 1237 >ref|NP_958615.1|77ORF001 Length = 1509 Score = 59.3 bits (142), Expect = 2e-07 Identities = 44/133 (33%), Positives = 58/133 (43%), Gaps = 2/133 (1%) Frame = +1 Query: 93088 GQSLDPAFNRYPFEGHYRISSPFNLRRHHPITGRISPHRGTDFAMRTGTPVDAPAAGRVI 93267 G LDP Y HY ++ + P H G DF V P GR+ Sbjct: 1117 GGILDPDKINY----HYGRTAAYTAATGRPF------HEGVDFPF-VYQEVRTPMGGRLT 1165 Query: 93268 KSAYQAGGAGNYLVIRHDNGYKTRYMHLSKRLVS--EGDRVEMGQKIALSGNTGGSTGPH 93441 + + +GG GNY+ I + HL S G V+ G + L+GNTG STGPH Sbjct: 1166 RMPFMSGGYGNYVKIT-SGVIDMLFAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPH 1224 Query: 93442 LHYEVMVNNRAVD 93480 LH+E+ N R D Sbjct: 1225 LHFEMRRNGRHFD 1237 >ref|NP_040602.1|Tail fiber protein Length = 401 Score = 54.3 bits (129), Expect = 7e-06 Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 7/250 (2%) Frame = -3 Query: 139874 EIASASQDLAGRTDTTASSLQETSASMEELTGTVSNTADSARQAS---GLATSASQSATR 139704 E+A + +A T S + SAS ++ V++ DSAR AS G A S++Q A+ Sbjct: 112 EVARNASVVAQSTADAKKSAGDASASAAQVAALVTDATDSARAASTSAGQAASSAQEASS 171 Query: 139703 GGQVVGDVVKTMDEIEAASHQVAEIVTTMDGIAFQTNLLALNASVEAARAGEQGRGFAVV 139524 G + ++ AA+ T G A + A + AA + A Sbjct: 172 GAEAASAKATEAEKSAAAAESSKNAAATSAGAAKTSETNAAASQQSAATSASTAATKASE 231 Query: 139523 ASEVRQLATRSAEASREIKSLIDNAADKTQAGAELARSAGTAMDEIVEGVARVSEVLGE- 139347 A+ + A S EA++ ++ ++A + + A A ++ A + E AR SE E Sbjct: 232 AATSARDAVASKEAAKSSETNASSSAGRAASSATAAENSARAA-KTSETNARSSETAAER 290 Query: 139346 -IDAATSEQRDGIGQVNVAVTELDNM--TQQNAAMVEQSATAAAELKAQSHRLAETVGAF 139176 AA + G + A T+ + +A+ + +A AAA S + AE + + Sbjct: 291 SASAAADAKTAAAGSASTASTKATEAAGSAVSASQSKSAAEAAAIRAKNSAKRAEDIASA 350 Query: 139175 TLRERGEGER 139146 E + R Sbjct: 351 VALEDADTTR 360 >ref|NP_818239.1|gp188 Length = 318 Score = 53.5 bits (127), Expect = 1e-05 Identities = 75/263 (28%), Positives = 105/263 (39%), Gaps = 23/263 (8%) Frame = +1 Query: 27631 REFEDTVAEIGADNIAAFIAEPIMGAGGV---------LVAPTDYHKRMQA-------VC 27762 R+ D++ AD++ AE AG V LV+ D R+ A V Sbjct: 71 RKLIDSLERPDADSLRVLYAEGGRDAGAVAFTQFPNWSLVSLIDREGRLVAPEVVLDEVD 130 Query: 27763 RANDI--LYIADEVVTGFGRLGHFFASEAVYETQPDIINCAKGLSSGYAPLGATLISDTL 27936 RA +ADE TGFGRLG + +A Y PD I G + G LG + Sbjct: 131 RATKSGRTVVADESATGFGRLGRIWGHQA-YGFTPDAI-IFGGPAGGGLTLGGVI----- 183 Query: 27937 YDVLSTPQGPGGVLSTGFT--YSGHPVSCAAALKNIEIIEREGICENVREVGPYLEERLA 28110 GP +L F +G P++CA + I E + E+VRE G ERL Sbjct: 184 --------GPAELLDDAFVGPMAGAPLACATGAATLAAINPE-LLEHVREEGVTFGERLR 234 Query: 28111 SLSHH--ATVGDVRGSHFMMCLENVADKQTKALFPVEARVGDRVAFEAQQRGLIIR-PVG 28281 +L + D GS L+ Q F V R Q GL+ PVG Sbjct: 235 ALVDRFGDYLADTAGSGLYHTLD-FRSPQLARKFEVSTR----------QHGLLTAPPVG 283 Query: 28282 HLNIVSPPLIWTRETVDRVVDIL 28350 +V+P LI + + R V+++ Sbjct: 284 STVVVTPTLIASERELARGVELI 306 Score = 43.1 bits (100), Expect = 0.016 Identities = 51/193 (26%), Positives = 72/193 (37%), Gaps = 10/193 (5%) Frame = +3 Query: 57690 LVFDEVATGFGRTGRMFAADHADVTPDIMVL----SKGLT-GGYLGHAATLATDRVHSAF 57854 +V DE ATGFGR GR++ TPD ++ GLT GG +G A L AF Sbjct: 139 VVADESATGFGRLGRIWGHQAYGFTPDAIIFGGPAGGGLTLGGVIGPAELL-----DDAF 193 Query: 57855 IGDSPEHAFMHGPTFMGNPLACRVALESLAVFEEDDYLGRIQTLNGVLREELRDDAALRA 58034 +G G PLAC +LA + L ++ E LR R Sbjct: 194 VG-----------PMAGAPLACATGAATLAAI-NPELLEHVREEGVTFGERLR-ALVDRF 240 Query: 58035 HPAVADVRVLGATAVIEVHDXXXXXXXXXXXRERGVWLR-PFGRWLYTMPAYVTSTHDLR 58211 +AD G ++ R+ G+ P G + P + S +L Sbjct: 241 GDYLADTAGSGLYHTLDFRSPQLARKFEVSTRQHGLLTAPPVGSTVVVTPTLIASERELA 300 Query: 58212 R----ITEVMKHW 58238 R I E ++ W Sbjct: 301 RGVELIAETLEGW 313 >ref|NP_064745.1|gp7 Length = 540 Score = 48.9 bits (115), Expect = 3e-04 Identities = 59/231 (25%), Positives = 83/231 (35%), Gaps = 7/231 (3%) Frame = -3 Query: 139829 TASSLQETSASMEELTGTVSNTADSARQASGLATSASQSATRGGQVVGDV-VKTMDEIEA 139653 TA+ L T+A+ S TA SA A+ ATSA+ SAT Q + E A Sbjct: 106 TAAGLSATAAATSATNAGASETAASA-SATASATSATNSATSASQAATSASAAAVSEGNA 164 Query: 139652 ASHQ--VAEIVTTMDGIAFQTNLLALNASVEAARAGEQGRGFAV----VASEVRQLATRS 139491 A+ + A T+ G A A ASV A A A A+ AT Sbjct: 165 ATSETNAANSATSASGSASTATTQASAASVSATNAATSASNAATSATNAAASQAAAATSE 224 Query: 139490 AEASREIKSLIDNAADKTQAGAELARSAGTAMDEIVEGVARVSEVLGEIDAATSEQRDGI 139311 A+ ++ +A + + A A SA TA + S A+TS Sbjct: 225 TNAAASESTVTTSATNAATSEANAATSASTATTQATNAATSAS------TASTSATNAAT 278 Query: 139310 GQVNVAVTELDNMTQQNAAMVEQSATAAAELKAQSHRLAETVGAFTLRERG 139158 + N A + + +A + A AA L + V TL G Sbjct: 279 SETNAASSASSAASSATSAQASKDAALAALDSFDDRYLGQKVSDPTLDNDG 329 Score = 40.8 bits (94), Expect = 0.077 Identities = 45/203 (22%), Positives = 72/203 (35%), Gaps = 5/203 (2%) Frame = -3 Query: 139868 ASASQDLAGRTDTTASSLQETSASMEELTGTVSNTADSARQASGL-----ATSASQSATR 139704 A+ S AG ++T AS+ SA+ + T ++ A ++ A+ + ATS + +A Sbjct: 115 AATSATNAGASETAASASATASATSATNSATSASQAATSASAAAVSEGNAATSETNAANS 174 Query: 139703 GGQVVGDVVKTMDEIEAASHQVAEIVTTMDGIAFQTNLLALNASVEAARAGEQGRGFAVV 139524 G + AAS T+ A A NA+ A A A Sbjct: 175 ATSASGSASTATTQASAASVSATNAATSASNAATS----ATNAAASQAAAATSETNAAAS 230 Query: 139523 ASEVRQLATRSAEASREIKSLIDNAADKTQAGAELARSAGTAMDEIVEGVARVSEVLGEI 139344 S V AT +A + + +A+ T A SA TA + Sbjct: 231 ESTVTTSATNAATSEANAAT---SASTATTQATNAATSASTASTSATNAATSETNAASSA 287 Query: 139343 DAATSEQRDGIGQVNVAVTELDN 139275 +A S + A+ LD+ Sbjct: 288 SSAASSATSAQASKDAALAALDS 310 >ref|YP_024782.1|p54 Length = 683 Score = 48.5 bits (114), Expect = 4e-04 Identities = 24/73 (32%), Positives = 43/73 (58%) Frame = -3 Query: 42995 FAMTVHKSQGSEFTHVMFVLPERANPILTRELVYTGITRARQRLTLAGGGASVVESALTR 42816 + +TVHKSQGSE+ V + + +L+REL+YT +TRA++ + G ++E A R Sbjct: 561 YCLTVHKSQGSEWRKVFLITHYDHSSMLSRELIYTALTRAKEEFS-CFGKEDLIEKACAR 619 Query: 42815 RVVRDSGFAEWVA 42777 ++ + + +A Sbjct: 620 AEIKGNTLEDKIA 632 >ref|NP_039722.1|predicted 14.5Kd protein Length = 130 Score = 48.5 bits (114), Expect = 4e-04 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Frame = -1 Query: 295594 LCPFHQEKSPSFTVSAEKQFYHCFGCGVHGNALRFLMEFDHLRFPEA---VEQLASRLGL 295424 LCPFH +++PS VS + Q Y+C CGV G+ + + + + F EA E L+ + Sbjct: 30 LCPFHGDETPSAAVSYDLQGYNCMACGVRGDVISIIRHEEEVTFAEAKRIAENLSVGGNV 89 Query: 295423 DVPREGADDP 295394 V R+ A P Sbjct: 90 PVQRKPARKP 99 >ref|NP_046874.1|putative DNA primase Length = 129 Score = 48.1 bits (113), Expect = 5e-04 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Frame = -1 Query: 295594 LCPFHQEKSPSFTVSAEKQFYHCFGCGVHGNALRFLMEFDHLRFPEAV---EQLASRLGL 295424 LCPFH +++PS VS + Q ++C CGV G+ + + + + F EAV E L+ + Sbjct: 30 LCPFHGDETPSAAVSYDLQGFNCLACGVRGDVISIIRHEEEVSFAEAVRIAEGLSVGGNI 89 Query: 295423 DVPREGADDP 295394 V R+ A P Sbjct: 90 PVQRKPARKP 99 >ref|NP_543063.1|putative lambda repressor Length = 218 Score = 47.4 bits (111), Expect = 8e-04 Identities = 26/72 (36%), Positives = 39/72 (54%) Frame = +1 Query: 3586 MDTLGPRIKQLRMEAGLSKAALARRVGVSDVTISYWESGTIKQIGHERLLSLAEALECPL 3765 M +LG R+ R +AGL++ ALA++ GV+ V IS E G K + L +A AL+C Sbjct: 1 MKSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60 Query: 3766 ERLLDNNTPTHH 3801 + L + H Sbjct: 61 QWLQSGDEKDKH 72 >ref|NP_061531.1|integrase Length = 369 Score = 47.0 bits (110), Expect = 0.001 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 8/133 (6%) Frame = -1 Query: 9622 RRKDGSFSYL----AQIRIARR--GQPDHSESRTFPRKAMAEEWAKRRELGLHSPRGVLS 9461 +R D ++ ++ A ++ RR G D+S ++ ++ A+ W K +E+G++ PR Sbjct: 4 KRNDSAYWWISFKSATGKLVRRSSGTADYSAAKALEQQERAKAW-KEKEMGVNPPR---- 58 Query: 9460 AKWKGVTLDDAIERYLHEFAQDAERSKRATIQQLQ--RFPIARVQVTELTSEQIIGHAVM 9287 T ++ I YL + A+ +RS T+ +++ R A V +L + I G+ Sbjct: 59 ------TFEEVIIPYL-QHARQHQRSYETTVHRIKPLREYFAGRVVNDLGGQDIRGYGAH 111 Query: 9286 RRDSGIKPSTINR 9248 R D+G P+TINR Sbjct: 112 RLDAGASPATINR 124 >ref|NP_720278.1|Int Length = 387 Score = 46.6 bits (109), Expect = 0.001 Identities = 25/56 (44%), Positives = 30/56 (53%) Frame = -1 Query: 8770 ATAACGIEDLNFHDLRHEATSRLFEAGYEIVEVQQFTLHESWEVLTRYTHFRPETL 8603 A GIED FHDLRH S L +AG I +Q+ ES E++ RY H P L Sbjct: 302 ALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHL 357 >ref|YP_006360.1|Int Length = 387 Score = 46.6 bits (109), Expect = 0.001 Identities = 25/56 (44%), Positives = 30/56 (53%) Frame = -1 Query: 8770 ATAACGIEDLNFHDLRHEATSRLFEAGYEIVEVQQFTLHESWEVLTRYTHFRPETL 8603 A GIED FHDLRH S L +AG I +Q+ ES E++ RY H P L Sbjct: 302 ALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHL 357 >ref|NP_059606.1|C2 Length = 216 Score = 46.6 bits (109), Expect = 0.001 Identities = 26/61 (42%), Positives = 39/61 (63%) Frame = +1 Query: 3595 LGPRIKQLRMEAGLSKAALARRVGVSDVTISYWESGTIKQIGHERLLSLAEALECPLERL 3774 +G RI+ R + + +AAL + VGVS+V IS WE + G E LL+L++AL+C + L Sbjct: 6 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNG-ENLLALSKALQCSPDYL 64 Query: 3775 L 3777 L Sbjct: 65 L 65 >ref|NP_059584.1|Int Length = 387 Score = 46.6 bits (109), Expect = 0.001 Identities = 25/56 (44%), Positives = 30/56 (53%) Frame = -1 Query: 8770 ATAACGIEDLNFHDLRHEATSRLFEAGYEIVEVQQFTLHESWEVLTRYTHFRPETL 8603 A GIED FHDLRH S L +AG I +Q+ ES E++ RY H P L Sbjct: 302 ALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHL 357 >ref|NP_047971.2|gp26 Length = 174 Score = 45.8 bits (107), Expect = 0.002 Identities = 23/52 (44%), Positives = 29/52 (55%) Frame = +2 Query: 65891 QRLYDALRGGIQQGRLPPGSALPSSRQLATELGIGRNTVLSAVDRLVAEGFL 66046 Q Y + G I GR PG LPS R + +LGIGR + + +LVAEG L Sbjct: 24 QAAYVIISGWIATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGIL 75 Score = 40.0 bits (92), Expect = 0.13 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 74787 IFSGEYQPGDFVPREVDLCERFALNRSAVRSDLRQLVDAGIIE 74915 I +G Y PGD +P E +CE + R+A+R L +LV GI+E Sbjct: 34 IATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGILE 76 >ref|NP_803852.1|ORF286 Length = 508 Score = 45.1 bits (105), Expect = 0.004 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 17/115 (14%) Frame = -1 Query: 165283 WDNKIEA---ELQEVILEKE-KAEDLRRL-------------GVGPTRTMLFTGPPGVGK 165155 W N+IE ++ VIL KE K E L ++ G+ T + TGPPG GK Sbjct: 180 WGNEIEVTKRDINTVILRKEIKEEFLNKIEEFYSDRKWYDDRGLPYKFTCVLTGPPGTGK 239 Query: 165154 TLAANWLAERVGKSIIVLDLAAVMSSYLGQTGNNLKKVIEEAGNSGSVLFLDEFD 164990 T + +A K++ L LA++ + L + L K G++L +++FD Sbjct: 240 TSISKAIASHFNKNVSALSLASMTNDSLRRAFTTLPK--------GNILLIEDFD 286 >ref|NP_599058.1|integrase Length = 387 Score = 44.7 bits (104), Expect = 0.005 Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Frame = -1 Query: 8806 PTVESR*YTLACATAAC----GIEDLNFHDLRHEATSRLFEAGYEIVEVQQFTLHESWEV 8639 PTV Y A A GI+D FHDLRH S L +AG + +Q+ ES E+ Sbjct: 286 PTVREMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLGQAGVPLSVLQEMGGWESIEM 345 Query: 8638 LTRYTHFRPETL 8603 + RY H P L Sbjct: 346 VRRYAHLAPNHL 357 >ref|NP_075318.1|gp51 Length = 171 Score = 44.3 bits (103), Expect = 0.007 Identities = 18/50 (36%), Positives = 28/50 (56%) Frame = -1 Query: 295594 LCPFHQEKSPSFTVSAEKQFYHCFGCGVHGNALRFLMEFDHLRFPEAVEQ 295445 LC H+E PS VS + ++C C GNA+ LM ++ + + AVE+ Sbjct: 33 LCWHHEESRPSAAVSYQLNAFNCLACSARGNAITLLMTYEEVNYQTAVER 82 >ref|NP_817647.1|gp58 Length = 135 Score = 43.1 bits (100), Expect = 0.016 Identities = 16/46 (34%), Positives = 29/46 (63%) Frame = -1 Query: 295591 CPFHQEKSPSFTVSAEKQFYHCFGCGVHGNALRFLMEFDHLRFPEA 295454 CPFH +++PS ++S + + CF C V G+A+ + E + + + EA Sbjct: 33 CPFHGDETPSASISFKHNAFRCFACPVKGSAVAIIKEQEEVSYAEA 78 >ref|YP_024964.1|putative prophage repressor protein Length = 244 Score = 42.7 bits (99), Expect = 0.020 Identities = 25/65 (38%), Positives = 39/65 (60%) Frame = +1 Query: 3595 LGPRIKQLRMEAGLSKAALARRVGVSDVTISYWESGTIKQIGHERLLSLAEALECPLERL 3774 +G RI++LR GL+ LA G+S ++S WESG K + +L+ LA+ L +E L Sbjct: 7 IGTRIRELRKAKGLTLQQLADVFGISRASVSEWESGRSKPDAN-KLVLLAKELHTAVEYL 65 Query: 3775 LDNNT 3789 L+ +T Sbjct: 66 LNGDT 70 >ref|NP_852723.1|putative integrase Length = 348 Score = 42.7 bits (99), Expect = 0.020 Identities = 24/81 (29%), Positives = 41/81 (50%) Frame = -3 Query: 9029 MEDIMEFAIASSRRQEEITRLTWADLDEQAMTCWVRDAKHPCLKWGSHKGFKLTHEAMAI 8850 ++ I++FAI + R IT+L W+ +D W+ + K G+ G L +A+ + Sbjct: 180 LKPIVQFAILTGLRMSNITQLKWSQIDLSKRQAWINSEQS---KTGNSIGVPLNDKAIEV 236 Query: 8849 IQRQPKAQKESRIFPYSGKSI 8787 I Q KE+ +F Y GK + Sbjct: 237 IVSQFGKHKEN-VFTYKGKPV 256 >ref|NP_943806.1|gp28 Length = 1932 Score = 42.0 bits (97), Expect = 0.035 Identities = 63/242 (26%), Positives = 102/242 (42%), Gaps = 14/242 (5%) Frame = -3 Query: 139874 EIASASQDLAGRTDTTASSLQETSASMEELTGTVSNTADSARQASGLATSASQSATRGGQ 139695 E A AS+D A A +L + +ME LT + TA+ A ASG A A AT G Sbjct: 602 ENARASRDAAAAQAELAENLNRSRVAME-LTSQATKTANDALLASGGAVDA---ATIG-- 655 Query: 139694 VVGDVVKTMDEIEAASHQVAEIVTTMDGIAFQTNLLALNASVEAARAGEQGRGFAVVASE 139515 VGD + + + A S+ T+ G+A L+L A GF + + Sbjct: 656 AVGDQISAIPDRLAGSYD----EDTIKGVATALKDLSLTEQQLATIVTGAQPGFDALTAR 711 Query: 139514 VRQLATRSAEASREIKSLID-------NAADKTQAGAELARSAGT----AMDEIVEGVAR 139368 +R++ A A++ ++++ D NAA LA++ G A E+ + Sbjct: 712 LREMGPGGAIAAQNLQAVRDATLGAANNAATAAPLLQNLAQTLGVDVPQAAAELTNAFSA 771 Query: 139367 V-SEVLGEIDAATSEQRDGIGQVNVAVTELDNMTQQNAAMVEQSATAAA--ELKAQSHRL 139197 V EV IDA + + + VA+ E ++ +VE A +LKA + + Sbjct: 772 VPKEVPINIDAPGGQ---AVFDMLVAIGEKVSVDNNKNIVVEAPLAPAVLEQLKAIGYEV 828 Query: 139196 AE 139191 + Sbjct: 829 TQ 830 >ref|NP_777327.1|hypothetical protein Length = 196 Score = 41.6 bits (96), Expect = 0.045 Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Frame = +1 Query: 93229 GTPVDAPAAGRVIKSAYQAGGAGNYLVIRHDNGYKTRYMHLSKRLVSEGDRVEMGQKIAL 93408 G PV A GRV+ + G ++ G TRY HL LV GD V GQ+I Sbjct: 66 GQPVHAMTDGRVVIAGRFPVWGGMVVLWHPSAGVWTRYGHLRDILVHPGDVVVAGQQIGT 125 Query: 93409 SG--NTGGSTGPHLHYEVMV 93462 G TGG HLH++V + Sbjct: 126 IGKMTTGGYC--HLHFDVFI 143 >ref|NP_050128.1|putative DEAH-family helicase Length = 455 Score = 41.2 bits (95), Expect = 0.059 Identities = 56/278 (20%), Positives = 113/278 (40%), Gaps = 9/278 (3%) Frame = -1 Query: 87778 RDVLGQAQTGTGKTAAFALPLLSRLDLQRREPQVLVLAPTRELAQQVAASFVQYGRGVKG 87599 ++VL Q+ G+GK+ A L R+ +VL + REL +Q+ +F +G + Sbjct: 25 KNVLIQSPAGSGKSITMA-ELAKRITSNGE--RVLFVVHRRELVKQIKNTFSSWGVNMNL 81 Query: 87598 LEVLSLCGGQEYREQLSGLRRGAQVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLR 87419 E+ + E+L TP ++ +D L + + Sbjct: 82 CEIYMVQTASRRLEKLM-----------TPNYIL--VDEAHHSLAKTYKKINNHFKNAHI 128 Query: 87418 MGFIDDVKRVVSDTPKDAQRVFFSATLPDEISRIV-NHYLVD----PLRIAIETKTKTAE 87254 +GF R+ KD ++ L +IS ++ NHYL + + +TK K + Sbjct: 129 LGFTATPVRLSGKGFKD---IYDDLVLGPKISWLIENHYLAPYTYYSVNLIDQTKLKKSS 185 Query: 87253 GIEQRLVRIEGGAKLEALSRLLEVEPVDA----AIVFVRTRAACTTLVEQLLLRGVNAAA 87086 + IE K +++ A AI++ + +C + ++ + A Sbjct: 186 TGDYTHKSIENAGKNIVYGDVIQSYHKFANNTKAIIYSYSVHSCQQIAKEFNKNNIPAKE 245 Query: 87085 LSGDLDQSLRERTVERLKRGKVDVLIATDVAARGLDVP 86972 + G + R++ ++ + GK+ +L+ ++ G+DVP Sbjct: 246 VDGKTKKEDRDKAMQDFRDGKIKILVNAELYGEGVDVP 283 >ref|YP_025049.1|putative repressor protein Length = 257 Score = 40.4 bits (93), Expect = 0.10 Identities = 21/61 (34%), Positives = 37/61 (60%) Frame = +1 Query: 3595 LGPRIKQLRMEAGLSKAALARRVGVSDVTISYWESGTIKQIGHERLLSLAEALECPLERL 3774 +G R+K +R + G+S +LA ++GVS T+ +E G I+++ E + +A AL E L Sbjct: 3 VGERMKTIRKQKGISADSLAAKIGVSRSTVFRYEKGDIEKVPIEVVAKVANALNIKPEVL 62 Query: 3775 L 3777 + Sbjct: 63 M 63 >ref|NP_818340.1|gp39 Length = 628 Score = 40.0 bits (92), Expect = 0.13 Identities = 55/222 (24%), Positives = 86/222 (38%), Gaps = 28/222 (12%) Frame = +2 Query: 99431 QGVDQPITEL---LDGRVPRDADPRVQDIEVGHLLSMQAGL-ERTSGAN--------YGG 99574 Q VD+ + L L+ VP P I +GH+LSM++G+ E T+G N Sbjct: 147 QAVDKGLITLDDTLEQYVP--GIPNGTAITMGHMLSMRSGIAEYTAGINALWITLFPTWP 204 Query: 99575 WVASDDWVGNALSRPFVADPGGRMLYSTGNSHLLSAAL--TDASGRDTLSLMREWLGSPL 99748 W + D++G ++ P PG LY+ N L+ L D + R + +E + PL Sbjct: 205 WTGAKDFLG-SMKGPSNFYPGTDYLYTNSNFALIGMVLEIVDPAHRPIKQIFKEDIIDPL 263 Query: 99749 GIEIPPW--------------TRDPQGIYFGGNEMGLTPRALLKIGELYRQQGMHDGQRV 99886 G+ W T +P + G + K E R M Sbjct: 264 GLTETSWPPIGPVPPPASIADTFNPNFLDAAG-ALATNINDYTKFAEALRDNAMGLSPES 322 Query: 99887 LPASWIERSWQPRTRSHFNQDDYGYGWFMTDLAETPVYYGWG 100012 A W+ W+ T D Y G+++ + YYG+G Sbjct: 323 YDA-WLSTFWKHPT----GWDPYANGFYI----PSEYYYGYG 355 >ref|NP_817477.1|gp27 Length = 946 Score = 40.0 bits (92), Expect = 0.13 Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 15/157 (9%) Frame = +2 Query: 99344 SPDDIANIKSLSKTLISALVGAAIA------RDVIQGVDQPITELLDGRVPRDADPRVQD 99505 +PD I S +K + V AI D I D P +L D R + Sbjct: 121 TPDMHFRIGSATKPFTATAVLMAIQDGLISLEDTIDQFDTPEFKLSD-------IDRANE 173 Query: 99506 IEVGHLLSMQAGL-----ERTSGANYGGWVAS----DDWVGNALSRPFVADPGGRMLYST 99658 I++ HL+ M++G+ + T N+ + S W S V DPG Y Sbjct: 174 IKIRHLMMMRSGVFNEQRDLTFMLNFALFPKSGFSDQSWFNVLKSHKLVRDPGTEFEYVN 233 Query: 99659 GNSHLLSAALTDASGRDTLSLMREWLGSPLGIEIPPW 99769 GN L+S L G+ ++ + + +PLG+ W Sbjct: 234 GNWFLISLILKAVRGKHIRQILYDDIINPLGLTETSW 270 >ref|NP_050999.1|P38 Length = 390 Score = 40.0 bits (92), Expect = 0.13 Identities = 20/50 (40%), Positives = 28/50 (56%) Frame = -1 Query: 8770 ATAACGIEDLNFHDLRHEATSRLFEAGYEIVEVQQFTLHESWEVLTRYTH 8621 A GIE+ FHDLRH S L ++G + +Q+ ES E++ RY H Sbjct: 302 ALKRAGIENFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESVEMVRRYAH 351 >ref|NP_818091.1|gp15 Length = 202 Score = 39.7 bits (91), Expect = 0.17 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 5/124 (4%) Frame = +1 Query: 70066 LERHAQQTQAELDAVQRQARHLEAQAQWHATDAKLRDARDHGQREHRDA-----EAHWQT 70230 L R A Q Q +++ R AR + Q+ + KL++A Q DA EA+ Q Sbjct: 64 LIRRAHQAQVVKESLNRVAR-TQPQSGDTSLQRKLKEAVTQAQAPRDDADLASYEAYAQD 122 Query: 70231 LAPQRADREWRRLIAPQRHRLTRQAELPHEIARLEKTHAATREDLARAETAQHGATRARD 70410 +A QRA+R R+ A ++ + ++ I RLE AA + D A + Sbjct: 123 MANQRAERSARKAAAEEQWKTDVSQQIRGVIERLETLQAARQVDNANNRAVTGSMSNLLA 182 Query: 70411 EAEQ 70422 EA++ Sbjct: 183 EAKK 186 >ref|NP_944247.1|hypothetical protein Length = 153 Score = 39.3 bits (90), Expect = 0.23 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = +1 Query: 6550 NEQDARDWLCAACGIGSRVELDHHQRAAGIFQ-HIRKRYNRWKQQQG 6687 N DA + A C I SR ELD RAA +FQ HIR + W++++G Sbjct: 106 NADDAAVIVRATCKIESRAELDSDDRAAHLFQEHIRSPFMLWRRREG 152 >ref|NP_038317.1|ORF16 Length = 183 Score = 38.9 bits (89), Expect = 0.29 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Frame = +1 Query: 3604 RIKQLRMEAGLSKAALARRVGVSDVTISYWESGTIKQIGHERLLSLAEALECPLERLLD- 3780 RIKQLR L++A LA +GV+ TI +WE ++L LA+ E + LLD Sbjct: 3 RIKQLRKSRKLTQAELADLIGVTKRTIIHWEKYGFSSA--DKLQELADCFEVSISYLLDY 60 Query: 3781 --NNT 3789 NNT Sbjct: 61 DINNT 65 >ref|NP_445687.1|putative helicase Length = 559 Score = 38.5 bits (88), Expect = 0.38 Identities = 23/66 (34%), Positives = 33/66 (50%) Frame = -1 Query: 87163 IVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKRGKVDVLIATDVAARG 86984 +V VR A L E + G+ A +S R +E LK K+ VLI+T +A G Sbjct: 427 LVIVRRIAIAKKLAEIMRENGIIADWVSSKTKLEERMEKIEALKNEKLQVLISTSLADEG 486 Query: 86983 LDVPRI 86966 LD+P + Sbjct: 487 LDIPNL 492 >ref|NP_061653.1|transposase Length = 328 Score = 38.5 bits (88), Expect = 0.38 Identities = 20/58 (34%), Positives = 31/58 (53%) Frame = -1 Query: 188101 GINASTWISNGLVRQYFPKDTDFRNVTDAEL*RVVEKVNSHPRK*PEYWTPAKIFLGE 187928 G N +T NGL+R++FPK TD V +L ++ +N PRK + P ++ E Sbjct: 269 GTNENT---NGLLREFFPKKTDLAKVNQEQLNYALDSINYRPRKCLNWKFPYEVLCDE 323 >ref|NP_817947.1|gp96 Length = 566 Score = 38.5 bits (88), Expect = 0.38 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 4/131 (3%) Frame = -1 Query: 165184 LFTGPPGVGKTLAANWLAERVGKSIIVLDLAAVMSSYLGQTGNNLKKVIEEAGNSGSVL- 165008 + G G GKTL+ L ++ LD+ A+ Y+G++ + L+ + + G V+ Sbjct: 317 MLIGVSGCGKTLSCQALGAEWNWPVVRLDINALKGKYVGESESRLRGIFSKIDALGQVIV 376 Query: 165007 FLDEFD-AIAKRRGDDGDIGELKRLVNVLLQSLDSWSKDGLLIAATNHPEMLDRAVWR-- 164837 ++DE + A+ D G + +L + + ++ N P L R Sbjct: 377 YIDEVEKALEGAVSGSADGGVSADALGAILTWMQDRAGQAFVMMTANDPSKLPPEFLRKG 436 Query: 164836 RFDRVVEFDNP 164804 RFD V D P Sbjct: 437 RFDEVWWIDLP 447 >ref|NP_536371.1|putative tail length tape measure protein Length = 1354 Score = 38.5 bits (88), Expect = 0.38 Identities = 55/244 (22%), Positives = 100/244 (40%), Gaps = 16/244 (6%) Frame = -3 Query: 139874 EIASASQDLAGRTDTTASSLQETSASMEELTG----TVSNTADSARQASG--------LA 139731 ++ S ++L G D A + ++SA ++ + TV N ++ +A+G + Sbjct: 192 DLNSVLEELPGVADAIARGMGKSSAQLKSMAEEGKLTVGNLVEALTRAAGGTDTLFEKMQ 251 Query: 139730 TSASQSATRGGQVVGDVVKTMDEIEAASHQVAEIVTT----MDGIAFQTNLLALNASVEA 139563 T+ Q+ TR + + D+ AS ++A+ +T +DGI + L S+ A Sbjct: 252 TTVGQTMTRLQTEIVKYIGESDQATGASARLAQGITYVAEHLDGI------VKLGVSLAA 305 Query: 139562 ARAGEQGRGFAVVASEVRQLATRSAEASREIKSLIDNAADKTQAGAELARSAGTAMDEIV 139383 R AV A+ Q AT A R + ++T E A++A Sbjct: 306 GRIAVYFGQSAVAAT---QAATAWVGARRAL-------VEETIKQHEAAQAA-------- 347 Query: 139382 EGVARVSEVLGEIDAATSEQRDGIGQVNVAVTELDNMTQQNAAMVEQSATAAAELKAQSH 139203 +++ G+ AA ++ ++ A EL M ++ QSA A +K Sbjct: 348 -----LAKAQGDRAAAAAKLQNAQAAEAAAQAELAGMRAMRESLAMQSALTAGSIKYTEA 402 Query: 139202 RLAE 139191 +LAE Sbjct: 403 KLAE 406 >ref|NP_944130.1|UvsW RNA-DNA and DNA-DNA helicase Length = 503 Score = 38.5 bits (88), Expect = 0.38 Identities = 25/70 (35%), Positives = 33/70 (47%) Frame = -1 Query: 87826 TPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPLLSRLDLQRREPQVLVLAPTRELA 87647 TP QA T+ + ++G T GK+ L L+ LQR E +VLVL PT L Sbjct: 113 TPHWYQADTVFNAINKNRMIGNLPTSAGKSLIACL--LTYWYLQRYEGKVLVLVPTTALV 170 Query: 87646 QQVAASFVQY 87617 Q+ F Y Sbjct: 171 DQMIGDFADY 180 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,659,536,133 Number of Sequences: 14420 Number of extensions: 34755077 Number of successful extensions: 125859 Number of sequences better than 0.5: 59 Number of HSP's better than 0.5 without gapping: 12827 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 125570 length of database: 3,019,461 effective HSP length: 129 effective length of database: 1,159,281 effective search space used: 134970449706 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig70 (180,853 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945089.1|gp58 125 1e-27 ref|NP_862850.1|gp11 76 1e-12 ref|NP_795433.1|hypothetical protein 68 3e-10 ref|NP_046572.1|ABC transporter 64 6e-09 ref|NP_818239.1|gp188 63 1e-08 ref|NP_061573.1|Orf77 50 7e-05 ref|NP_932485.1|hypothetical protein 50 7e-05 ref|NP_490639.1|hypothetical protein 48 3e-04 ref|NP_958091.1|gp34 43 0.011 ref|NP_052285.1|Orf80 42 0.025 ref|NP_958267.1|hypothetical protein 42 0.025 ref|NP_046793.1|Orf82 41 0.042 ref|NP_878235.1|gp82 41 0.042 ref|YP_164321.1|hypothetical protein 40 0.055 ref|NP_817472.1|gp22 40 0.055 ref|NP_861745.1|RB69ORF055c hypothetical protein 39 0.16 ref|YP_024941.1|gp21 39 0.16 ref|NP_851946.1|hypothetical protein 39 0.21 ref|NP_859323.1|hypothetical protein 38 0.27 ref|NP_612955.1|hypothetical protein 38 0.27 ref|NP_859157.1|hypothetical protein 38 0.27 ref|NP_050578.1|hypothetical protein 38 0.27 ref|NP_049539.1|hypothetical protein 38 0.27 ref|NP_839885.1|hypothetical protein 38 0.36 ref|NP_859343.1|hypothetical protein 37 0.46 ref|NP_859271.1|hypothetical protein 37 0.46 ref|NP_612975.1|hypothetical protein 37 0.46 ref|NP_612905.1|hypothetical protein 37 0.46 ref|NP_859177.1|hypothetical protein 37 0.46 ref|NP_859105.1|hypothetical protein 37 0.46 ref|YP_089649.1|hypothetical protein 37 0.46 ref|NP_536658.1|C4-type zinc-finger 37 0.46 >ref|NP_945089.1|gp58 Length = 297 Score = 125 bits (315), Expect = 1e-27 Identities = 84/257 (32%), Positives = 126/257 (49%), Gaps = 3/257 (1%) Frame = -1 Query: 143539 LPPLASLMPFEAAARLESFSRAADELHLTQAAISRQIRALEDDLGVALFERRNRGVFLTA 143360 LPPL L+ F+AAAR +F+RAA+EL++ Q A+S+Q+ LE LG LF R + + LT Sbjct: 6 LPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTR 65 Query: 143359 AGREFGRTVSAALEGIAAQANALRQEVHDGVVVLFCQLCEAFYWVMPRLASLNRRHPELE 143180 AG+++ V A L + +E + + C A ++ R+A + HPE+ Sbjct: 66 AGQQYADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVS 125 Query: 143179 VRLVTSTRPVVEHHDYFDVALQ--TSGRPSGSHALAFTASDEIFPICSPGYLAAQPRPIT 143006 VR++ + FD+ + P G A A D + C+P +LA R + Sbjct: 126 VRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAED-VHAYCAPTFLAG--RRVP 182 Query: 143005 LASLPEHCLLHHEADPPDWFEWDSWLR-AMGNFAPALGNGMVFDSYPLVLQAALAGHGIA 142829 L E LL E W W W R +G + +SYP++LQ AL GHG Sbjct: 183 PQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAI 242 Query: 142828 LGWRRSAEHLIQSGQLV 142778 LGW+ L++SG+LV Sbjct: 243 LGWKHMITPLVESGKLV 259 Score = 84.0 bits (206), Expect = 4e-15 Identities = 64/205 (31%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Frame = +2 Query: 88691 LPPILWMQAFEAAARTLSFTQAGRELGVTQSAVSQRIRLLEDRLGQALFVRHPRSLSLTP 88870 LPP+ + F+AAAR +FT+A EL V Q AVS+++ LE LG LFVR ++L LT Sbjct: 6 LPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTR 65 Query: 88871 AGQAWLPSIQEAFTRIAEGTAEVFGPHPDAPVTLRATPAVQAGWLATELTHFHRRHCDVT 89050 AGQ + + E TA V +T+ +LA + F H +V+ Sbjct: 66 AGQQYADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVS 125 Query: 89051 VRLVSAVWPGDFSAEGVDMEIRYGQG-DWPDMEAVLLNEEVMLPVCAPG-VARQLHKPED 89224 VR++ + +A D+ + Y + P + + E + CAP +A + P+D Sbjct: 126 VRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVPPQD 185 Query: 89225 LAGHTLLHAAGFA---LGWPSWLSL 89290 L TLL A +GW W L Sbjct: 186 LMEATLLVAEEQQRQWMGWRDWFRL 210 Score = 72.4 bits (176), Expect = 1e-11 Identities = 70/300 (23%), Positives = 121/300 (40%), Gaps = 3/300 (1%) Frame = +1 Query: 83230 PMSAVDDLAFFQRVAQAGSLTGAARELGLSLSAVSKRLQQLEARLGVSXXXXXXXXXXXX 83409 P+ + L FF A+ G+ T AA EL ++ AVSK++ +LE LG + Sbjct: 5 PLPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLT 64 Query: 83410 XEGERYLTRGAMILGDLSDLESSLRDQDALLSGRLRINATFGFGRRHVAPLISRFAALHP 83589 G++Y R IL D + + + + S L I G +A I+ F+A HP Sbjct: 65 RAGQQYADRVHAILADCVEATALVMKEQTPHS--LTIACASGTATLFLADRIAEFSAEHP 122 Query: 83590 QXXXXXXXTSFPLGLDEQGFDINI-RVGEPPDSRWIARRLLSNRRILCAAPAYLANAPKL 83766 + L+ FDI + + + P +++ AP +LA + Sbjct: 123 EVSVRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAG--RR 180 Query: 83767 ETLEDLAHHRCLIVRENDTDYSLWR--FEATEGTRSQRAIRVNGRLASNDAEAMTRMALD 83940 +DL L+ E + WR F T G R R +++N + ++AL Sbjct: 181 VPPQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPART---ISANSYPVLLQLALH 237 Query: 83941 GHGILLRSWWDVHEYLASGDLVPLLPQWQGVRADFYLLYSERMRENARVRKFVDFMITEM 84120 GHG +L + + SG LV + +++ R+ V F ++++T + Sbjct: 238 GHGAILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLLTHV 297 Score = 38.1 bits (87), Expect = 0.27 Identities = 30/127 (23%), Positives = 49/127 (38%) Frame = -3 Query: 60260 GGFTAAAERLGTSTARLSRAVSRLERQLDTTLVQRTTRRLDVTEEGASFIAQARQXXXXX 60081 G FT AAE L + +S+ V +LE L TTL R + L +T G + + Sbjct: 22 GNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHAILADC 81 Query: 60080 XXXXXXXXXXXXEPAGRLRVDAATPFLLHQIVPHLAAFHAAYPKVRLELTTHETNIDLIE 59901 + + + T L + +A F A +P+V + + E +L Sbjct: 82 VEATALVMKEQTPHSLTIACASGTATLF--LADRIAEFSAEHPEVSVRILVREGVFNLNA 139 Query: 59900 QRTDIAI 59880 DI + Sbjct: 140 AEFDIGV 146 >ref|NP_862850.1|gp11 Length = 219 Score = 75.9 bits (185), Expect = 1e-12 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 19/171 (11%) Frame = -1 Query: 69808 KKCFVLM-------PFSEQYKEVYSEIYKPVCSGLGMECWRVDEISRTGSITKDIVEGII 69650 K CF++ P E+ VY + PVC LG + RVD ++ +I I+ + Sbjct: 4 KICFIVTAIGESGTPTRERADNVYKYLIAPVCEELGYKPVRVDHVNAVDNINATIINYLK 63 Query: 69649 DADVIIADLTTKNPNVFYELGIAHSVGNKTIMVAQSISDVPFDIANYRVLIYEQSISGSK 69470 A ++IAD+T NPN FYELG ++ + + + +PFD+ R + Y+ +S + Sbjct: 64 TAPMVIADMTDHNPNAFYELGFRQALELPLVPIIRVGERLPFDVMTTRTVFYDTDVSKIE 123 Query: 69469 KFKSDLTAAIQELQK------------ALDQTNNPLQEALSSRSTLGKRKQ 69353 + K +L + IQ + LD N+ L + L+ L +++Q Sbjct: 124 ESKENLKSKIQSFENFKMPESRIERNLTLDDLNDNLTKKLNKILNLLEKQQ 174 >ref|NP_795433.1|hypothetical protein Length = 259 Score = 67.8 bits (164), Expect = 3e-10 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 7/160 (4%) Frame = -1 Query: 69808 KKCFVLMPFSE-------QYKEVYSEIYKPVCSGLGMECWRVDEISRTGSITKDIVEGII 69650 K CFV+ + Q +V + +PVC G + RVD+ S G I + I+ + Sbjct: 13 KTCFVVTAIGQNGSPERIQADKVLKYLIEPVCREFGYKVVRVDKESTNGDINESIINHLK 72 Query: 69649 DADVIIADLTTKNPNVFYELGIAHSVGNKTIMVAQSISDVPFDIANYRVLIYEQSISGSK 69470 +++IAD+T N N FYE G ++G I + + +PFD+ R + Y+ ++ + Sbjct: 73 SDELVIADMTGHNANAFYEFGFRQALGLPLIPIIKHTEKLPFDVIARRTVFYDTDVAEIE 132 Query: 69469 KFKSDLTAAIQELQKALDQTNNPLQEALSSRSTLGKRKQV 69350 K L + ++ A + Q L+ +S K +V Sbjct: 133 NSKERLRNMVHDVD-AFVMPSQRSQSELNLQSIDSKLNEV 171 >ref|NP_046572.1|ABC transporter Length = 705 Score = 63.5 bits (153), Expect = 6e-09 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 6/199 (3%) Frame = -1 Query: 160138 VIENLDLRLPPGRVTAIVGPNGCGKSTLLAGLSRLLKPRDGTVLLDGADIQRLPSRQLAK 159959 ++E+++L L I+G +G GKST LS+L K D ++ L+G DI R + K Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 159958 RLALLPQQPHAPEALTVAELVRFGRHPHQSWLRQWSPEDKRIVDAA------LDMTGLTP 159797 R+ + + P + T+ E + G Q+ + E+ I+ LD Sbjct: 558 RIVYIDENPFLFKG-TIKENLCMGEIFDQNEI-----ENACIMSQCHEFICNLDKQYSYK 611 Query: 159796 LAQRPVDALSGGQRQRAWIAMAIAQQTATLLLDEPTSALDLGHQVEVYELIQSLATSGKT 159617 L++ + LS GQ+QR +A AI Q L+LDE S +D + +YE + + Sbjct: 612 LSENGSN-LSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDC---L 667 Query: 159616 IVMVIHDLASACRYADHLI 159560 I+++ H+ S +Y L+ Sbjct: 668 IILITHNDPSNFKYNKKLV 686 Score = 62.0 bits (149), Expect = 2e-08 Identities = 52/217 (23%), Positives = 93/217 (42%), Gaps = 22/217 (10%) Frame = +3 Query: 121164 LHSIDLSVADGELIVVVGPSGCGKSTLLRILAGLEPITAGELAINGRRVNELEPAARDIA 121343 + I+L + + ++++G SG GKST + L+ L + + +NG +N Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINR--------- 549 Query: 121344 MVFQNYALYPHMSVAGNMAYALKN----RGTPKDEI-------RRRVANTAALLGLDDLL 121490 Y H+S+ + Y +N +GT K+ + + + N + + + Sbjct: 550 --------YDHLSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFI 601 Query: 121491 ERRPRQ-----------LSGGQRQRVAMGRAIIREPQVFLFDEPLSNLDAKLRVQMRLEI 121637 +Q LS GQ+QR+A+ RAI+ +PQV + DE LSN+D +L Sbjct: 602 CNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPD---NTKLIY 658 Query: 121638 RRLQKRLGITSVYVTHDQVEAMTLADRLVVMNGGHVE 121748 L R+ + +TH+ +LV N +E Sbjct: 659 ETLH-RMDCLIILITHNDPSNFKYNKKLVFRNNRIIE 694 Score = 49.7 bits (117), Expect = 9e-05 Identities = 45/218 (20%), Positives = 101/218 (46%), Gaps = 6/218 (2%) Frame = -3 Query: 75884 VLKGLSLTAHKGDVITLIGASGSGKSTFLRCMNLLEQPNEGELIVHGENIAFKTTRHGRE 75705 +++ ++L + D + +IG SG+GKSTF + ++ L + + + ++G +I Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDI---------- 547 Query: 75704 PADWKQVERIRAKLSMVFQSFNLWAHM-TLLENVIEAPIHVLGKTRKAATEHARELLDRV 75528 + + + + +V+ N + T+ EN+ I + A + + + Sbjct: 548 ----NRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACI--MSQCHEFI 601 Query: 75527 GLLDHADYYP-----AQMSGGQQQRGAIARALAMDPEVMLFDEPTSALDPELVGDVLKVM 75363 LD Y + +S GQ+QR A+ARA+ P+V++ DE S +DP+ + + Sbjct: 602 CNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPD---NTKLIY 658 Query: 75362 RDLAKEGRTMIVVTHEMSFARDVSTQVIYLHQGMVEEA 75249 L + +I++TH + ++++ + ++E + Sbjct: 659 ETLHRMDCLIILITHNDPSNFKYNKKLVFRNNRIIESS 696 Score = 40.0 bits (92), Expect = 0.072 Identities = 18/57 (31%), Positives = 32/57 (56%) Frame = -3 Query: 112526 SRLSGGQRQRVAIARALYQAREVFLGDEPLASVDPHQAERLLAMIQARHATCVIALH 112356 S LS GQ+QR+A+ARA+ +V + DE L+++DP + + + ++ H Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCLIILITH 673 >ref|NP_818239.1|gp188 Length = 318 Score = 62.8 bits (151), Expect = 1e-08 Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 1/172 (0%) Frame = +1 Query: 51274 LVFDEVQSGVGRSGYLYAYMHYGVTPDILTTAKALGGGFPVGAMLTTDRVAPSLAVGTHG 51453 +V DE +G GR G ++ + YG TPD + GGG +G ++ + VG Sbjct: 139 VVADESATGFGRLGRIWGHQAYGFTPDAIIFGGPAGGGLTLGGVIGPAELLDDAFVG--- 195 Query: 51454 STYGGNPLACAVALAAVETIDTPEVLSGVMRRHALFKEHLEAINRRHGVF-KEVRGLGLL 51630 G PLACA A + I+ PE+L V F E L A+ R G + + G GL Sbjct: 196 -PMAGAPLACATGAATLAAIN-PELLEHVREEGVTFGERLRALVDRFGDYLADTAGSGLY 253 Query: 51631 LGAEMAPAYEGRAKEILPLAMEEGLMALVAGPNVLRMAPSLVISDTDVNEGM 51786 + R E+ + GL+ + + + P+L+ S+ ++ G+ Sbjct: 254 HTLDFRSPQLARKFEV--STRQHGLLTAPPVGSTVVVTPTLIASERELARGV 303 >ref|NP_061573.1|Orf77 Length = 67 Score = 50.1 bits (118), Expect = 7e-05 Identities = 21/32 (65%), Positives = 25/32 (78%) Frame = -1 Query: 158395 GESLAYCEECGEAIPQARREAIKGVRLCIACQ 158300 GESL CE+CGE IP ARRE + GVR C++CQ Sbjct: 27 GESLYECEDCGEEIPVARRELVPGVRKCLSCQ 58 >ref|NP_932485.1|hypothetical protein Length = 84 Score = 50.1 bits (118), Expect = 7e-05 Identities = 25/68 (36%), Positives = 40/68 (58%) Frame = -1 Query: 158491 MAGGWSKDGAVQEQIDSTIEDALERARSELPSGESLAYCEECGEAIPQARREAIKGVRLC 158312 MA G+ + + I++ +++AL+ RS G++ +CEEC E IP+ARR AI C Sbjct: 1 MAVGFGPENGLHMTINAGLDNALDFIRSTQYKGDTPEFCEECDEPIPEARRMAI-STAYC 59 Query: 158311 IACQSERD 158288 + CQ+ D Sbjct: 60 VQCQTVHD 67 >ref|NP_490639.1|hypothetical protein Length = 68 Score = 47.8 bits (112), Expect = 3e-04 Identities = 22/56 (39%), Positives = 35/56 (62%) Frame = -1 Query: 158455 EQIDSTIEDALERARSELPSGESLAYCEECGEAIPQARREAIKGVRLCIACQSERD 158288 E+ ++ ++ AL + R+ S +CE+CGE IP+ARR+A G CI+CQ R+ Sbjct: 9 ERAENMVQAALAQ-RTNTRLAPSALWCEDCGEQIPEARRQAAPGCECCISCQELRE 63 >ref|NP_958091.1|gp34 Length = 74 Score = 42.7 bits (99), Expect = 0.011 Identities = 22/53 (41%), Positives = 29/53 (54%) Frame = -1 Query: 158458 QEQIDSTIEDALERARSELPSGESLAYCEECGEAIPQARREAIKGVRLCIACQ 158300 Q++ E + ARS + + S CEEC IP+ARR AI GV C+ CQ Sbjct: 9 QQREQEDRERHISNARSRI-AAPSRFLCEECDAPIPEARRAAIPGVAFCVTCQ 60 >ref|NP_052285.1|Orf80 Length = 75 Score = 41.6 bits (96), Expect = 0.025 Identities = 24/53 (45%), Positives = 30/53 (56%) Frame = -1 Query: 158458 QEQIDSTIEDALERARSELPSGESLAYCEECGEAIPQARREAIKGVRLCIACQ 158300 QE + I +A R R E+ S CEEC IP+ARR AI GV+ C+ CQ Sbjct: 13 QEDRERHISNARSR-RHEV----SAFICEECDAPIPEARRRAIPGVQCCVTCQ 60 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 41.6 bits (96), Expect = 0.025 Identities = 69/221 (31%), Positives = 86/221 (38%), Gaps = 20/221 (9%) Frame = -3 Query: 113936 ADDLAHDPPGPD---RRAGDRGHAASRRGFPAA-------SQEDQGQPAGHALPGARGLK 113787 A D + D P PD RRA R A RR P A + E P P A G Sbjct: 44 ARDRSPDHPEPDHPCRRAPSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCA 103 Query: 113786 RVPINAGSIKEYAHALARRLPVVRR--QHGRPG------RHLPFHGHSR-RRPVAARGTL 113634 A + EYA AL R P R H R R +P +R R PV R Sbjct: 104 PA---APAAPEYAPALRPRAPECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRT 160 Query: 113633 RQGRRL-PRERTGRGSRVRAGEILRCGRVGVPQRSGTTGLVRRTDRRAGTPPGSRLPGHC 113457 R+ RR PR R + R G VGV +R G + RR RA PG+ Sbjct: 161 RRRRRPDPRRRV----QPRLG-------VGVHRRRGARRVGRRVRVRARPGPGA------ 203 Query: 113456 PGQGGRRVPHLLHRQP*QRDRRAGRRPAQERAGQGVHLRRQ 113334 + RR PH H + + RR GRR + + + H R + Sbjct: 204 -ARRPRRRPHPEHPRAVRPRRRTGRRHRRRASLRPRHRRHR 243 Score = 38.1 bits (87), Expect = 0.27 Identities = 32/84 (38%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Frame = -2 Query: 48852 PARHDTPTLPIGPGAPC*AER-GESARRHARPSP--LHRDASHGVPGHPPAPDWPRCAGR 48682 P R P L +G A R G R ARP P R P HP A R GR Sbjct: 168 PRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGR 227 Query: 48681 SHRAGAS-RPRHTRADFCPRLDAP 48613 HR AS RPRH R P ++ P Sbjct: 228 RHRRRASLRPRHRRHRSTPPMNTP 251 >ref|NP_046793.1|Orf82 Length = 74 Score = 40.8 bits (94), Expect = 0.042 Identities = 22/55 (40%), Positives = 28/55 (50%) Frame = -1 Query: 158461 VQEQIDSTIEDALERARSELPSGESLAYCEECGEAIPQARREAIKGVRLCIACQS 158297 +QEQ +E + AR + G S CEEC IP ARR A C++CQS Sbjct: 8 IQEQQAELLERQINAARVK-HCGASALVCEECDAPIPAARRAAYPSATRCVSCQS 61 >ref|NP_878235.1|gp82 Length = 74 Score = 40.8 bits (94), Expect = 0.042 Identities = 22/55 (40%), Positives = 28/55 (50%) Frame = -1 Query: 158461 VQEQIDSTIEDALERARSELPSGESLAYCEECGEAIPQARREAIKGVRLCIACQS 158297 +QEQ +E + AR + G S CEEC IP ARR A C++CQS Sbjct: 8 IQEQQAELLERQINAARVK-HCGASALVCEECDAPIPAARRAAYPSATRCVSCQS 61 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 40.4 bits (93), Expect = 0.055 Identities = 47/136 (34%), Positives = 54/136 (39%), Gaps = 18/136 (13%) Frame = +1 Query: 16729 ATQHDEDHHGLAEDGHQGQVGVAGGRLDG-----VVETHAGEQGLDPAPGDQYPH----- 16878 A + + H G + GH G A R G V HA E G P G P Sbjct: 272 AAESEPRHPGAS--GHLGNREPALRRAAGPGPRAVDREHAPEHGAAPVRGRPLPRGKPDQ 329 Query: 16879 -VDQRDQPA--AERAIRAPGQRHGRQAGALAHQPD--QQERDG-ADQRADQHAAHGGREG 17040 V + DQP AER +R G QAG Q D Q R G ADQ AA G +G Sbjct: 330 RVQRADQPVQRAERGLRDAGAGLPHQAGCGYLQADCLQDRRGGPGGAGADQPAARRGVQG 389 Query: 17041 QIGHQ--EHAGEDGGD 17082 Q G + E G G D Sbjct: 390 QAGRRTVERRGLQGAD 405 >ref|NP_817472.1|gp22 Length = 1576 Score = 40.4 bits (93), Expect = 0.055 Identities = 37/112 (33%), Positives = 44/112 (39%) Frame = +1 Query: 88672 RRGHDVVAPDSMDAGVRGRGAHPELHPGRPRTGRHAVGRQSADSLARGPARPGLVRAPSP 88851 RRG +V P M G+ G GA P PG+ VG + GP PG AP Sbjct: 1327 RRGLPIVPPAGMGIGIPGIGA-PGQAPGQ-------VGPFPTPNGINGPTLPGGPGAP-- 1376 Query: 88852 QSVADAGRPGLVAEHPGGLHAHRRGYRRSLRPPPGCPGDATGHACRPGRMAG 89007 PG PGG ++ +PPPG G AT A RP G Sbjct: 1377 --------PGAPPGVPGG---------QTPKPPPGASGAATPGAARPQSSTG 1411 >ref|NP_861745.1|RB69ORF055c hypothetical protein Length = 211 Score = 38.9 bits (89), Expect = 0.16 Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 13/142 (9%) Frame = -1 Query: 114238 GLGASGPVAQDAQHKFFRFNLPVTAYEDVLMQRMVAAATHTGDVIVIVSYTGRTRELVEI 114059 G+G + +A A F +P A DV++ +S +G+T E++ + Sbjct: 57 GVGKNANIATKASETFASLGIPSMYLNTGHYSHGDAGFIAPNDVLIHISRSGKTEEMIGV 116 Query: 114058 A---RVARDNGAIVLGITAPDSPLAHE-------CTETLEVITPEDTDVYMPMTSRMIHL 113909 A ++ R N +L PD P +E CT + D + P S + L Sbjct: 117 AKHLKMIRPNVKQILLHCNPDIPQENEALFDYSFCT---GIAVEVDENSLAPTMSTTLLL 173 Query: 113908 ALIDVLATGVTLRRG---EDFL 113852 ALID A ++ RG DFL Sbjct: 174 ALIDTFAINLSSERGFTSNDFL 195 >ref|YP_024941.1|gp21 Length = 92 Score = 38.9 bits (89), Expect = 0.16 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%) Frame = +1 Query: 143968 MAAVALYTSPLFIALFAAWLAGERLTTAGWWGI----VLGFAGVVLILR----PGTMHFT 144123 M Y + L + LF W+A + GWWG ++G + V + + P + Sbjct: 1 MMVTIFYLANLVVLLFCMWIAVTNVFVTGWWGTLGFSIIGLSSAVNLFKPLRMPSAIDMP 60 Query: 144124 PTVALPLLAAVCYALASVVTRIH 144192 T+ L LA VC +A+ V H Sbjct: 61 ETLMLVGLAIVCVWIAARVAYWH 83 >ref|NP_851946.1|hypothetical protein Length = 73 Score = 38.5 bits (88), Expect = 0.21 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%) Frame = -1 Query: 158389 SLAYCEECGEAIPQARREAIKGVRLCIACQSERD---KQR 158279 S +C ECG+ I + RR A++G R C +CQ E + KQR Sbjct: 31 SATHCCECGDPIDERRRLAVQGCRTCASCQEELELISKQR 70 >ref|NP_859323.1|hypothetical protein Length = 73 Score = 38.1 bits (87), Expect = 0.27 Identities = 16/45 (35%), Positives = 29/45 (64%) Frame = -1 Query: 158428 ALERARSELPSGESLAYCEECGEAIPQARREAIKGVRLCIACQSE 158294 +L++ +S+ + S +C ECG+ I + RR A++G R C +CQ + Sbjct: 19 SLQKYKSD-SNAPSATHCCECGDPIDERRRLAVRGCRACASCQQD 62 >ref|NP_612955.1|hypothetical protein Length = 73 Score = 38.1 bits (87), Expect = 0.27 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Frame = -1 Query: 158428 ALERARSELPSGESLAYCEECGEAIPQARREAIKGVRLCIACQSERD---KQR 158279 +L++ +S+ + S +C ECG+ I + RR A++G R C +CQ + + KQR Sbjct: 19 SLQKYKSD-SNAPSATHCCECGDPIDERRRLAVQGCRTCASCQEDLELISKQR 70 >ref|NP_859157.1|hypothetical protein Length = 73 Score = 38.1 bits (87), Expect = 0.27 Identities = 16/45 (35%), Positives = 29/45 (64%) Frame = -1 Query: 158428 ALERARSELPSGESLAYCEECGEAIPQARREAIKGVRLCIACQSE 158294 +L++ +S+ + S +C ECG+ I + RR A++G R C +CQ + Sbjct: 19 SLQKYKSD-SNAPSATHCCECGDPIDERRRLAVRGCRACASCQQD 62 >ref|NP_050578.1|hypothetical protein Length = 73 Score = 38.1 bits (87), Expect = 0.27 Identities = 16/45 (35%), Positives = 29/45 (64%) Frame = -1 Query: 158428 ALERARSELPSGESLAYCEECGEAIPQARREAIKGVRLCIACQSE 158294 +L++ +S+ + S +C ECG+ I + RR A++G R C +CQ + Sbjct: 19 SLQKYKSD-SNAPSATHCCECGDPIDERRRLAVRGCRACASCQQD 62 >ref|NP_049539.1|hypothetical protein Length = 73 Score = 38.1 bits (87), Expect = 0.27 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Frame = -1 Query: 158428 ALERARSELPSGESLAYCEECGEAIPQARREAIKGVRLCIACQSERD---KQR 158279 +L++ +S+ + S +C ECG+ I + RR A++G R C +CQ + + KQR Sbjct: 19 SLQKYKSD-SNAPSATHCCECGDPIDERRRLAVQGCRTCASCQEDLELISKQR 70 >ref|NP_839885.1|hypothetical protein Length = 74 Score = 37.7 bits (86), Expect = 0.36 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = -1 Query: 158461 VQEQIDSTIEDALERARSELPSGESLAYCEECGEAIPQARREAIKGVRLCIACQS 158297 +QEQ +E + AR + +L CEEC +P ARR A C++CQS Sbjct: 8 IQEQQAELLERQINAARVKHCCASALV-CEECDTPMPAARRAAYPSATRCVSCQS 61 >ref|NP_859343.1|hypothetical protein Length = 73 Score = 37.4 bits (85), Expect = 0.46 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%) Frame = -1 Query: 158389 SLAYCEECGEAIPQARREAIKGVRLCIACQSERD---KQR 158279 S +C ECG+ I + RR A++G R C +CQ + + KQR Sbjct: 31 SATHCCECGDPIDERRRLAVQGCRTCASCQEDLELISKQR 70 >ref|NP_859271.1|hypothetical protein Length = 284 Score = 37.4 bits (85), Expect = 0.46 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Frame = +3 Query: 53253 APTIPATPRSARCTCVPSIVAIAMAPCCPRRAGCSSPSFATASPTR-CWPRCAAASMKTA 53429 +P P T R R C SI + CP RAG ++ S T P+R CWPR S +T Sbjct: 185 SPLSPVTFRPLRA-CRTSITCRSPFAGCPDRAGVTALSLITLRPSRTCWPRVPFISFRTG 243 Query: 53430 PVRS 53441 S Sbjct: 244 NTTS 247 >ref|NP_612975.1|hypothetical protein Length = 73 Score = 37.4 bits (85), Expect = 0.46 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%) Frame = -1 Query: 158389 SLAYCEECGEAIPQARREAIKGVRLCIACQSERD---KQR 158279 S +C ECG+ I + RR A++G R C +CQ + + KQR Sbjct: 31 SATHCCECGDPIDERRRLAVQGCRTCASCQEDLELISKQR 70 >ref|NP_612905.1|hypothetical protein Length = 284 Score = 37.4 bits (85), Expect = 0.46 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Frame = +3 Query: 53253 APTIPATPRSARCTCVPSIVAIAMAPCCPRRAGCSSPSFATASPTR-CWPRCAAASMKTA 53429 +P P T R R C SI + CP RAG ++ S T P+R CWPR S +T Sbjct: 185 SPLSPVTFRPLRA-CRTSITCRSPFAGCPDRAGVTALSLITLRPSRTCWPRVPFISFRTG 243 Query: 53430 PVRS 53441 S Sbjct: 244 NTTS 247 >ref|NP_859177.1|hypothetical protein Length = 73 Score = 37.4 bits (85), Expect = 0.46 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%) Frame = -1 Query: 158389 SLAYCEECGEAIPQARREAIKGVRLCIACQSERD---KQR 158279 S +C ECG+ I + RR A++G R C +CQ + + KQR Sbjct: 31 SATHCCECGDPIDERRRLAVQGCRTCASCQEDLELISKQR 70 >ref|NP_859105.1|hypothetical protein Length = 284 Score = 37.4 bits (85), Expect = 0.46 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Frame = +3 Query: 53253 APTIPATPRSARCTCVPSIVAIAMAPCCPRRAGCSSPSFATASPTR-CWPRCAAASMKTA 53429 +P P T R R C SI + CP RAG ++ S T P+R CWPR S +T Sbjct: 185 SPLSPVTFRPLRA-CRTSITCRSPFAGCPDRAGVTALSLITLRPSRTCWPRVPFISFRTG 243 Query: 53430 PVRS 53441 S Sbjct: 244 NTTS 247 >ref|YP_089649.1|hypothetical protein Length = 73 Score = 37.4 bits (85), Expect = 0.46 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%) Frame = -1 Query: 158389 SLAYCEECGEAIPQARREAIKGVRLCIACQSERD---KQR 158279 S +C ECG+ I + RR A++G R C +CQ + + KQR Sbjct: 31 SATHCCECGDPIDERRRLAVQGCRTCASCQEDLELISKQR 70 >ref|NP_536658.1|C4-type zinc-finger Length = 69 Score = 37.4 bits (85), Expect = 0.46 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = -1 Query: 158389 SLAYCEECGEAIPQARREAIKGVRLCIACQSERDKQ 158282 S +C EC + IP+ R+E +KG + C CQ+ ++++ Sbjct: 34 SRTHCLECDDPIPKERQEKVKGCQYCTPCQAAKEQR 69 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 829,014,971 Number of Sequences: 14420 Number of extensions: 17040704 Number of successful extensions: 63609 Number of sequences better than 0.5: 32 Number of HSP's better than 0.5 without gapping: 11145 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 63501 length of database: 3,019,461 effective HSP length: 125 effective length of database: 1,216,961 effective search space used: 73209939838 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig69 (161,548 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164277.1|nucleoid-associated protein 317 2e-85 ref|NP_945089.1|gp58 179 5e-44 ref|YP_003923.1|putative ATP-dependent helicase 137 4e-31 ref|NP_958163.1|gp57 131 2e-29 ref|NP_944368.1|gp60 131 2e-29 ref|NP_705681.1|gp58 130 3e-29 ref|YP_164394.1|DEAD box family helicase 118 1e-25 ref|NP_817811.1|gp50 118 2e-25 ref|NP_943831.1|gp53 118 2e-25 ref|YP_195087.1|hypothetical protein 113 5e-24 ref|YP_024839.1|Pas53 113 6e-24 ref|NP_076827.1|Csp 89 1e-16 ref|NP_049999.1|putative helicase 87 4e-16 ref|NP_049952.1|putative helicase 87 4e-16 ref|NP_056709.1|putative helicase 87 4e-16 ref|NP_795616.1|putative helicase 85 2e-15 ref|NP_511031.1|helicase 84 3e-15 ref|NP_049421.1|putative helicase 84 4e-15 ref|NP_695088.1|putative helicase 84 5e-15 ref|NP_795446.1|putative DEAD box family helicase 82 1e-14 ref|NP_680515.1|putative helicase 79 1e-13 ref|NP_050128.1|putative DEAH-family helicase 78 3e-13 ref|NP_046877.1|putative non-heme haloperoxidase 72 2e-11 ref|NP_817650.1|gp61 71 3e-11 ref|NP_891789.1|dCMP deaminase 69 1e-10 ref|YP_024899.1|putative helicase 66 8e-10 ref|NP_861914.1|Cd dCMP deaminase 66 1e-09 ref|NP_944156.1|Cd dCMP deaminase 64 4e-09 ref|NP_046584.1|putative transglycosylase 59 2e-07 ref|NP_932553.1|dCMP deaminase 57 5e-07 ref|NP_049828.1|Cd dCMP deaminase 57 7e-07 ref|NP_052116.1|internal virion protein D 56 1e-06 ref|YP_024695.1|gp22 55 3e-06 ref|NP_040700.1|hypothetical protein 52 2e-05 ref|YP_164061.1|endolysin 49 2e-04 ref|NP_813780.1|internal virion protein D 48 2e-04 ref|NP_899367.1|dCMP deaminase 46 0.001 ref|NP_047971.2|gp26 45 0.002 ref|NP_046572.1|ABC transporter 43 0.008 ref|NP_817627.1|gp38 42 0.013 ref|NP_075289.1|gp22 42 0.013 ref|YP_024895.1|putative membrane protein 40 0.085 ref|NP_046853.1|putative deoxycytidinylate deaminase 39 0.14 ref|YP_024936.1|gp16 39 0.14 ref|NP_445687.1|putative helicase 39 0.19 >ref|YP_164277.1|nucleoid-associated protein Length = 351 Score = 317 bits (813), Expect = 2e-85 Identities = 163/331 (49%), Positives = 228/331 (68%), Gaps = 3/331 (0%) Frame = -3 Query: 112580 MPILTSIIHRLDKPDAETPATLTCAERALASTPELEALLAGVNDSFHAKPKAWGHF-GDT 112404 MPI SIIH +DK TP L + L ++ +E LLA +N+S++AK KAWG F G++ Sbjct: 1 MPIRHSIIHLIDKKPDGTPTVLHARDAELGNSQVIENLLADLNESYNAKNKAWGFFQGES 60 Query: 112403 GSSAFAAGLSEYLAETADFVTWSTRMAERIRDLVD-AHLSVGGHLLFVHYQHGERQYVSV 112227 G+ F+ L EYL DFV +S E ++ L++ ++LS GG++LF HYQ G Y+++ Sbjct: 61 GAYPFSGWLGEYLEGDRDFVGFSREAVEHLQKLMEESNLSTGGYVLFAHYQQGMTDYLAI 120 Query: 112226 ALLHHRQGFAIDGALEVVETPQLNLGQLMLAARIDLAQWQGGT-SRQYVSLIKDRGGKKF 112050 ALLHH +G A++ +L+V + L+LGQL LAARI+L++W+ S+QY+S IK +GG+K Sbjct: 121 ALLHHSEGAAVNESLDVTPSSHLDLGQLHLAARINLSEWRNNKQSKQYISFIKGKGGRKL 180 Query: 112049 AXXXXXXXXXXXXVDASGETRALLKAFSDYVEHEDLPDDASREKTDAVIDYASTQAKRGE 111870 + VD LLKAFSD+VE E + ++ +REKT +++DYA+ QA+ GE Sbjct: 181 SDYFRDFIGCQEGVDRRARRAPLLKAFSDFVESEGMAEEQAREKTVSLVDYATAQARLGE 240 Query: 111869 PVTLDELSELVDEQQPKAFYDYIRQQDYGLSEEIPPDKRTLNQFRRFTGRASGVSISFDS 111690 P+TLD LSEL+DEQQP+AFYD+I+ +DYGLS EIP DKRT NQFRRFTGRA G+SISF++ Sbjct: 241 PMTLDALSELIDEQQPRAFYDFIQHKDYGLSPEIPADKRTFNQFRRFTGRAEGLSISFEA 300 Query: 111689 HLLGNSIEFDAERDRLIIKQVPGSLKEQLKQ 111597 HLLG +EFD+ D L+I +P L QLK+ Sbjct: 301 HLLGTKVEFDSGSDTLLIHGLPAHLASQLKK 331 >ref|NP_945089.1|gp58 Length = 297 Score = 179 bits (455), Expect = 5e-44 Identities = 106/296 (35%), Positives = 159/296 (53%), Gaps = 2/296 (0%) Frame = -1 Query: 122116 LPPLACLRAFEAAARHASFTQAGSELHLTQSAVSRQIKRLEDDLGRPLFERHYEGLRLTP 121937 LPPL CL F+AAARH +FT+A EL++ Q AVS+Q+ +LE LG LF R + L LT Sbjct: 6 LPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTR 65 Query: 121936 AGERYFGVVQRLLRDLRDETARLRRRGDDRQLTLASSPTIASIWLARQLPDFQRAHPHIE 121757 AG++Y V +L D + TA + + LT+A + A+++LA ++ +F HP + Sbjct: 66 AGQQYADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVS 125 Query: 121756 IRILTVEDPHRLDLAEFDLGIYYHVPHEVDPPGLDAEAIFSHEEVAAVCSPAYLARHGDI 121577 +RIL E L+ AEFD+G+YY +V PPG+ AI + E+V A C+P +LA Sbjct: 126 VRILVREGVFNLNAAEFDIGVYY--IRDVPPPGIAGTAIVA-EDVHAYCAPTFLAGR--- 179 Query: 121576 RDADDLLARHTLMVVEDHYHDWLTWEGWYQ--AQNLAWRTPEHSLRANSFQLLMNAILAG 121403 R L TL+V E+ W+ W W++ + +R P ++ ANS+ +L+ L G Sbjct: 180 RVPPQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFR-PARTISANSYPVLLQLALHG 238 Query: 121402 QGVTLGWTRLLAADLAQHNLVQALPHTLPSRGRLSLLTPQHRHLTEPMRAFRAWVL 121235 G LGW ++ + LV A G ++ P R T + FR W+L Sbjct: 239 HGAILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLL 294 Score = 73.6 bits (179), Expect = 5e-12 Identities = 75/292 (25%), Positives = 120/292 (41%), Gaps = 12/292 (4%) Frame = -3 Query: 50021 QKMKEIVHLQSFLAVARTGSLTLAAEELHVTPSAVSHRLRQLEQRLGAKLLRRTPHGMAL 49842 Q + + L F A AR G+ T AAEEL+V AVS ++ +LE LG L R + L Sbjct: 4 QPLPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHL 63 Query: 49841 TGEGQRFKDRI----SDPIEAIEMALRPETGQEGPLTVSVMPWFASSWLMPRLKRFQLRC 49674 T GQ++ DR+ +D +EA + ++ +T LT++ A+ +L R+ F Sbjct: 64 TRAGQQYADRVHAILADCVEATALVMKEQTPHS--LTIACASGTATLFLADRIAEFSAEH 121 Query: 49673 PDARIRIETSSQLSDLAHGHVTAALRFGRG-DWPDIEVEPLFDEWVIPVASPDVVAQMGS 49497 P+ +RI + +L + + R P I + E V +P +A Sbjct: 122 PEVSVRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRV 181 Query: 49496 NAQDPARWPRLPDPDDL-----WSSWFGDEV--MGEAMRSSIELHDTSSLTEAAVNGMGV 49338 QD L + W WF V +G +I + L + A++G G Sbjct: 182 PPQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGA 241 Query: 49337 VLGRYTHVAPWLERGDLVTLASQWIRMPKRHYLVRSRHRPMHSCFPHFRRWL 49182 +LG + P +E G LV + + ++ R FR WL Sbjct: 242 ILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWL 293 Score = 68.2 bits (165), Expect = 2e-10 Identities = 71/294 (24%), Positives = 120/294 (40%), Gaps = 5/294 (1%) Frame = +3 Query: 127188 LVALRLFVRVAATGSFAGAARQQGLPASSVSRHIAALEKALGQRLLYRHTRAVRLTEVGE 127367 L L F A G+F AA + + +VS+ + LE LG L R +A+ LT G+ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 127368 RYYQQVREILDTLDIATEQAAGTASQPQGLLRINAPVAFGRRHIAPRLASFQARYPRIET 127547 +Y +V IL D A Q L I +A R+A F A +P + Sbjct: 69 QYADRVHAIL--ADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 127548 ELTLSDAFIDPXXXXXXXXXXXXA-LNDSSLVARRLAEQHFVVCAAPDYLAQWGIPATPE 127724 + + + + + + + + AP +LA +P P+ Sbjct: 127 RILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVP--PQ 184 Query: 127725 SLVEHNCLIYKGTR----GVQQWYFRSEGARRYQVREVRGNLRSNNAESLLEAALQGQGI 127892 L+E L+ + + G + W+ + G ++ + +N+ LL+ AL G G Sbjct: 185 DLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPART---ISANSYPVLLQLALHGHGA 241 Query: 127893 VLFPTWLIHAELEAGRLIPVLSDWEASGEPAPQGIHAIFPENRLRSSKVAAFLE 128054 +L +I +E+G+L+ + SD AS A Q I+P +R + V F E Sbjct: 242 ILGWKHMITPLVESGKLV-LASDAHASFGGAYQ---VIWPADRRDTPAVTMFRE 291 >ref|YP_003923.1|putative ATP-dependent helicase Length = 672 Score = 137 bits (344), Expect = 4e-31 Identities = 142/556 (25%), Positives = 222/556 (39%), Gaps = 83/556 (14%) Frame = +1 Query: 152047 PYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLV---IXXXXXXXXXXXXXXXXXXELVE 152217 PYQ A + + P V +GK+++ + E+V+ Sbjct: 33 PYQVVAYAEIAKRLSNYEHPFFVKASVSAGKTIIFAMVAKQCQKMGLKMLVLARQGEIVD 92 Query: 152218 QNHAKYRAYGLEADLFSAGLGRKESERQVVFGSVQSVVRSLER----FEAHEAWGAFTLL 152385 Q+ + +G+ +FSA LG K +V GS +V L+ F H ++ Sbjct: 93 QDSEEIDNFGVTNSIFSASLGIKSCYFPIVVGSEGTVANGLDNELADFVPH-------VI 145 Query: 152386 VIDECHRIP----PGASAGK-----VRDDKGA----------------------SSYHQV 152472 IDECH++ A GK +R +KG S Y V Sbjct: 146 GIDECHQVDWEDLAQAIEGKETMEQMRGEKGKIIMDGDIPLIGNDGKPLLGTKRSQYTIV 205 Query: 152473 IAHLRR-----HNPRLKVLGLTATPYRLGQGFIYHRHHHGMVRGDADCFFQDCVFEQPLR 152637 I + R H L++ G+T + +R G + + G F+++ V + Sbjct: 206 IMEMMRRCKKVHGHDLRIFGMTGSEFR---GVVPILVENPKALG----FWRERVTDIDTN 258 Query: 152638 LMVKQGYLAPPRRVDAALYAEDGEQTRYDFSRLSPGRGGGFEE-------AELNRVVQGH 152796 +++ G + P + DG YD + G ++ A + ++ Sbjct: 259 YLIEFGSVVP-----TIFGSTDG--VHYDLDKFKASSEDGVQDFTEKDMKAMEDEILHDK 311 Query: 152797 RATPGIIAEVVEQARERRGVMIFAATVAHAREIMGYLPAQQA-ALIVGATPGREREALIE 152973 T I+ V ++A ER V+I A V H +E LP A+I G T + R+ +++ Sbjct: 312 SLTQRIMQMVAKKAEERNAVLITCAGVRHCKEAAAALPPGSTYAIITGDTDNKARKKILD 371 Query: 152974 DFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG------- 153132 D +A ++KY V LTTG + P+ D ILR S++L Q++GRG+RL Sbjct: 372 DVRAGKIKYTFQVMALTTGVNVPNWDFSVILRKIGSLTLLIQLLGRGMRLLKSWQVAEGM 431 Query: 153133 -KQDCLILDYAGNPWDLYAPEVGEPRPDSDAEPVQVE-----------CPACGHANLFWG 153276 KQD L+ D+AG E+G+ D E Q + CP CG N F Sbjct: 432 VKQDHLVWDFAGT-----MDELGQLYFDPILEQAQFQKRFENGKDPKTCPKCGCVNSF-- 484 Query: 153277 KRDGELVIEHYGRRCQGLLEDTDGRRRQCDFRFRFKVCDQ-------------CGAENDI 153417 Y RRC ++ DG R CD + ++C+ CGAEND+ Sbjct: 485 ----------YARRCVNVI---DGER--CDHFWTSQICEDQVDERTGKILVKGCGAENDV 529 Query: 153418 AARACHQCDERLVDPD 153465 AR C CD LVDP+ Sbjct: 530 VARVCRCCDASLVDPN 545 >ref|NP_958163.1|gp57 Length = 614 Score = 131 bits (330), Expect = 2e-29 Identities = 110/394 (27%), Positives = 180/394 (45%), Gaps = 13/394 (3%) Frame = +1 Query: 152026 MSAPSLRPYQHQAVDNVIAHFRRGDDP-AVVVLPTGSGKSL-----VIXXXXXXXXXXXX 152187 M+ + R YQ +A D + + + + TG GKSL + Sbjct: 1 MTRKTPRWYQAEAADELFGALATAKNTNPIAAIVTGGGKSLLNAMLIERIAQTWPQARVM 60 Query: 152188 XXXXXXELVEQNHAKYRAYGLEA-----DLFSAGLGRKESERQVVFGSVQSVVRSLERFE 152352 EL++QN + RA+ A ++ AGL K+ Q +F + QSV R +RF Sbjct: 61 SLAPSMELIKQNVEEARAFWSPAMVARLGIYCAGLRMKDRMHQYIFATPQSVARQAKRF- 119 Query: 152353 AHEAWGAFTLLVIDECHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATP 152532 G F +++DE H + ++ R NP ++ +G+TAT Sbjct: 120 -----GPFDFVLVDEAHLFNIDMKTART-----------IVDTFRAANPHVRFVGMTATD 163 Query: 152533 YRLGQGFIYHRHHHGMVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQ 152712 + + G+ D D + +V++GYL+P D E Sbjct: 164 FIMKGLKAVPLTQCGLF----DAKVYDLTSGRNFNRLVREGYLSPVVSPSLRFPQIDTEG 219 Query: 152713 TRYDFSRLSPGRGGGFEEAELNRVVQGHRATPGIIAEVVEQARERRGVMIFAATVAHARE 152892 + +GG F+EAEL R + T + +E A +R+ M FA + HA Sbjct: 220 VKT--------KGGDFDEAELAR--RAMDVTRECVRVALEHAPDRKHFMWFAVNIEHAHM 269 Query: 152893 I-MGYLPAQQAALIV-GATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAIL 153066 I L A ++A+++ G ER + ++++ ++ +++V+VA+LTTGF+AP VD + L Sbjct: 270 IEQALLDAGESAVVIHGELEKSERVSGVDEYLKKQHRHIVSVAMLTTGFNAPFVDCLVAL 329 Query: 153067 RPTESVSLYQQIVGRGLRLAPGKQDCLILDYAGN 153168 RPT S+ L++QIVGRGLR GK++ L+LD GN Sbjct: 330 RPTRSLVLWRQIVGRGLRPYAGKENILVLDAGGN 363 >ref|NP_944368.1|gp60 Length = 614 Score = 131 bits (330), Expect = 2e-29 Identities = 110/394 (27%), Positives = 180/394 (45%), Gaps = 13/394 (3%) Frame = +1 Query: 152026 MSAPSLRPYQHQAVDNVIAHFRRGDDP-AVVVLPTGSGKSL-----VIXXXXXXXXXXXX 152187 M+ + R YQ +A D + + + + TG GKSL + Sbjct: 1 MTRKTPRWYQAEAADELFGALATAKNTNPIAAIVTGGGKSLLNAMLIERIAQTWPQARVM 60 Query: 152188 XXXXXXELVEQNHAKYRAYGLEA-----DLFSAGLGRKESERQVVFGSVQSVVRSLERFE 152352 EL++QN + RA+ A ++ AGL K+ Q +F + QSV R +RF Sbjct: 61 SLAPSMELIKQNVEEARAFWSPAMVARLGIYCAGLRMKDRMHQYIFATPQSVARQAKRF- 119 Query: 152353 AHEAWGAFTLLVIDECHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATP 152532 G F +++DE H + ++ R NP ++ +G+TAT Sbjct: 120 -----GPFDFVLVDEAHLFNIDMKTART-----------IVDTFRAANPHVRFVGMTATD 163 Query: 152533 YRLGQGFIYHRHHHGMVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQ 152712 + + G+ D D + +V++GYL+P D E Sbjct: 164 FIMKGLKAVPLTQCGLF----DAKVYDLTSGRNFNRLVREGYLSPVVSPSLRFPQIDTEG 219 Query: 152713 TRYDFSRLSPGRGGGFEEAELNRVVQGHRATPGIIAEVVEQARERRGVMIFAATVAHARE 152892 + +GG F+EAEL R + T + +E A +R+ M FA + HA Sbjct: 220 VKT--------KGGDFDEAELAR--RAMDVTRECVRVALEHAPDRKHFMWFAVNIEHAHM 269 Query: 152893 I-MGYLPAQQAALIV-GATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAIL 153066 I L A ++A+++ G ER + ++++ ++ +++V+VA+LTTGF+AP VD + L Sbjct: 270 IEQALLDAGESAVVIHGELEKSERVSGVDEYLKKQHRHIVSVAMLTTGFNAPFVDCLVAL 329 Query: 153067 RPTESVSLYQQIVGRGLRLAPGKQDCLILDYAGN 153168 RPT S+ L++QIVGRGLR GK++ L+LD GN Sbjct: 330 RPTRSLVLWRQIVGRGLRPYAGKENILVLDAGGN 363 >ref|NP_705681.1|gp58 Length = 614 Score = 130 bits (328), Expect = 3e-29 Identities = 110/394 (27%), Positives = 179/394 (45%), Gaps = 13/394 (3%) Frame = +1 Query: 152026 MSAPSLRPYQHQAVDNVIAHFRRGDDP-AVVVLPTGSGKSL-----VIXXXXXXXXXXXX 152187 M+ + R YQ +A D + + + + TG GKSL + Sbjct: 1 MTRKTPRWYQAEAADELFGALATAKNTNPIAAIVTGGGKSLLNAMLIERIAQTWPQARVM 60 Query: 152188 XXXXXXELVEQNHAKYRAYGLEA-----DLFSAGLGRKESERQVVFGSVQSVVRSLERFE 152352 EL++QN + RA+ A ++ AGL K+ Q +F + QSV R +RF Sbjct: 61 SLAPSMELIKQNVEEARAFWSPAMVARLGIYCAGLRMKDRMHQYIFATPQSVARQAKRF- 119 Query: 152353 AHEAWGAFTLLVIDECHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATP 152532 G F +++DE H + ++ R NP ++ +G+TAT Sbjct: 120 -----GPFDFVLVDEAHLFNIDMKTART-----------IVDTFRAANPHVRFVGMTATD 163 Query: 152533 YRLGQGFIYHRHHHGMVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQ 152712 + + G+ D D + +V++GYL+P D E Sbjct: 164 FIMKGLKAVPLTQCGLF----DAKVYDLTSGRNFNRLVREGYLSPVVSPSLRFPQIDTEG 219 Query: 152713 TRYDFSRLSPGRGGGFEEAELNRVVQGHRATPGIIAEVVEQARERRGVMIFAATVAHARE 152892 + +GG F+EAEL R + T + +E A +R+ M FA + HA Sbjct: 220 VKT--------KGGDFDEAELAR--RAMDVTRECVRVALEHAPDRKHFMWFAVNIEHAHM 269 Query: 152893 I-MGYLPAQQAALIV-GATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAIL 153066 I L A ++A+++ G ER ++++ ++ +++V+VA+LTTGF+AP VD + L Sbjct: 270 IEQALLDAGESAVVIHGELEKSERVLGVDEYLKKQHRHIVSVAMLTTGFNAPFVDCLVAL 329 Query: 153067 RPTESVSLYQQIVGRGLRLAPGKQDCLILDYAGN 153168 RPT S+ L++QIVGRGLR GK++ L+LD GN Sbjct: 330 RPTRSLVLWRQIVGRGLRPYAGKENILVLDAGGN 363 >ref|YP_164394.1|DEAD box family helicase Length = 526 Score = 118 bits (296), Expect = 1e-25 Identities = 107/379 (28%), Positives = 177/379 (46%), Gaps = 6/379 (1%) Frame = +1 Query: 152041 LRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLV---IXXXXXXXXXXXXXXXXXXEL 152211 LR YQ A +++ A + +G+ ++VLPTG GK++V + EL Sbjct: 3 LRDYQQDARESIQAEWDKGNRKTLLVLPTGCGKTIVFSKVIEDRVKKGERVLVLAHRGEL 62 Query: 152212 VEQNHAKY-RAYGLEADLFSAGLGRKESERQVVFGSVQSVVRSLERFEAHEAWGAFTLLV 152388 +EQ K ++ GL+ A S +VV GSVQ+++R + + + F ++ Sbjct: 63 LEQAADKLEKSTGLKTATEKAEQTSLGSWFRVVVGSVQTLMREKRLMQFPKDF--FDTII 120 Query: 152389 IDECHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATPYRLGQGFIYHRH 152568 IDE H + SY +V+ + N VLG+TATP R Sbjct: 121 IDEAHHCV-------------SDSYQRVLQYFDSAN----VLGVTATPDRSDMR------ 157 Query: 152569 HHGMVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQTRYDFSRLSPGR 152748 + +F+ FE L +K+GYL+P + + L D S + + Sbjct: 158 -------NLGSYFESLAFEYTLPKAIKEGYLSPIKALTIPL--------ELDLSGVGQ-Q 201 Query: 152749 GGGFEEAELNRVVQGHRATPGIIAEVVEQARERRGVMIFAATVAHAREIMGYLPAQ--QA 152922 G F +L + + + I E+ + A++R+ V +F V +++ L + +A Sbjct: 202 AGDFAAGQLGSALDPYLES--IADEMAKVAKDRKTV-VFLPLVKTSQKFTELLNKKGFKA 258 Query: 152923 ALIVGATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQI 153102 A + G + ++R ++EDF + L N +LT G+D P VD + +LRPT+ SLY Q+ Sbjct: 259 AEVNGDS--KDRAEILEDFDNDKYNVLCNSMLLTEGWDCPSVDCVVVLRPTKVRSLYSQM 316 Query: 153103 VGRGLRLAPGKQDCLILDY 153159 VGRG RL PGK + L+LD+ Sbjct: 317 VGRGTRLHPGKTELLLLDF 335 >ref|NP_817811.1|gp50 Length = 571 Score = 118 bits (295), Expect = 2e-25 Identities = 123/421 (29%), Positives = 177/421 (42%), Gaps = 17/421 (4%) Frame = +1 Query: 152041 LRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLVIXXXXXXXXXXXXXXXXXX---EL 152211 LR YQ AV V + G VVLPTG+GKS VI EL Sbjct: 12 LRSYQTAAVAAVERDWESGTKRTGVVLPTGAGKSTVIGKLASNAYRSGKRVVALAHRAEL 71 Query: 152212 VEQNHAKYRAYGLEADLFSAGLGRKESERQ---VVFGSVQSVVRSLERFEAHEAWGAFTL 152382 + Q A G+ E + +VF S+Q++ + R A G + Sbjct: 72 LFQMRRDMLAVDPTIPASDIGIVMAEHDDHHAPIVFASLQTLAHAKRR----NALGRRDV 127 Query: 152383 LVIDECHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATPYRLGQGFIYH 152562 ++ DE H GA +H L + + G TAT YR +G I Sbjct: 128 ILWDEFHHA-------------GAEGFHATFEELGGYT-HAYLCGFTATMYRNEKGTI-- 171 Query: 152563 RHHHGMVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQTRY-DFSRLS 152739 G+ GD Q +E+ LR +K G+L PR G+ R + +L Sbjct: 172 ----GL--GDV---IQKVSYEKDLRWAIKHGFLVQPR----------GKTVRIKNLDKLD 212 Query: 152740 PGR--GGGFEEAELNRVVQGHRATPGIIAEVVEQARERRGVMIFAATVAHAREIMGYLPA 152913 R G F+ EL V++ A ++ + ARER + +FAA+V A I + Sbjct: 213 DVRTVAGDFKNDELAEVMEA--AVEYVVDAIELHARERTNI-VFAASVDGAHMIADAINE 269 Query: 152914 Q--QAALIVGATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVS 153087 + A + G+ P ERE + + ++ K LV V VLT G D P D + + RPT S + Sbjct: 270 RGMTAEAVTGSMPHAEREQVYDRYRTGVTKNLVTVMVLTEGADFPMCDTVVMARPTRSKN 329 Query: 153088 LYQQIVGRGLRLAPGKQDCLILDYAGNPWDLYAPEVGEPRPDSDAEPVQVE------CPA 153249 LY Q+VGR LRL PGK D L+LD +G+ + + + P + E V + CP Sbjct: 330 LYAQMVGRALRLFPGKTDALVLDLSGSTRAMKLVNLTDLSPGAPVEEVDEQGQAIAVCPT 389 Query: 153250 C 153252 C Sbjct: 390 C 390 >ref|NP_943831.1|gp53 Length = 559 Score = 118 bits (295), Expect = 2e-25 Identities = 118/408 (28%), Positives = 178/408 (43%), Gaps = 11/408 (2%) Frame = +1 Query: 152041 LRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLVI---XXXXXXXXXXXXXXXXXXEL 152211 +RPYQ +AV+ + +H+ +G VVLPTG+GKS VI EL Sbjct: 1 MRPYQREAVEAIESHWSQGVTRVGVVLPTGTGKSTVIGRTAVNGYQNREPVLMVAHRGEL 60 Query: 152212 VEQNHAKYRAYGLEADLFSAGLGRKESE---RQVVFGSVQSVVRSLERFEAHEAWGAFTL 152382 ++Q G+ R E + +V ++Q++ + R EA G Sbjct: 61 IDQMAGTIFEVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRR----EAVGFRRR 116 Query: 152383 LVIDECHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATPYRLGQGFIYH 152562 ++ DE H GA +H L + L G TAT R +G Sbjct: 117 ILWDEVHH-------------AGAEGFHTTFTELGGYTDAL-FAGFTATMRRDDKG---- 158 Query: 152563 RHHHGMVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAA---LYAEDGEQTRYDFSR 152733 + G+ GD + V+E+ + + GYL PR + L A D +T Sbjct: 159 KSPVGL--GDV---IEKVVYEKDILWAIDSGYLVRPRGLTVRINNLNALDDVRT------ 207 Query: 152734 LSPGRGGGFEEAELNRVVQGHRATPGIIAEVVEQARERRGVMIFAATVAHAREIMGYLPA 152913 G F++++L V++ AT ++ + A +RR + IFAA+V A I L A Sbjct: 208 ----VAGDFQQSDLAEVMEA--ATEYVVDAIKLHAADRRPI-IFAASVDAAHHIADALTA 260 Query: 152914 QQ--AALIVGATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVS 153087 A + G+ ER+ + E ++ K LV V VLT G D P D + + RPT S + Sbjct: 261 ADFPAVAVTGSMSYAERQPVYEAYRNGTAKALVTVQVLTEGADFPMCDCVVLARPTRSRN 320 Query: 153088 LYQQIVGRGLRLAPGKQDCLILDYAGNPWDLYAPEVGEPRPDSDAEPV 153231 LY Q++GR LRL GKQD L+LD AG+ + + + P DA V Sbjct: 321 LYSQMIGRALRLYDGKQDALVLDLAGSSRSMKLVNLTQLVPGVDAAEV 368 >ref|YP_195087.1|hypothetical protein Length = 170 Score = 113 bits (283), Expect = 5e-24 Identities = 51/81 (62%), Positives = 62/81 (76%) Frame = +3 Query: 119301 YRIGRGEQGVLNVEPYKSELLPHWRFKTPDVAQASADALLEKFAAYRADDDFVGMDMARK 119480 YRIGRGEQGVL V+PY +++ HWRFKTP AQ SA + +F Y + DF+GMDM RK Sbjct: 24 YRIGRGEQGVLLVQPYSAQICLHWRFKTPQEAQVSAATIFARFWEYMNEGDFIGMDMCRK 83 Query: 119481 FLQMGYTRARRYANHRSGRKY 119543 FL+MG+TR+RRYANH SG KY Sbjct: 84 FLEMGFTRSRRYANHHSGCKY 104 >ref|YP_024839.1|Pas53 Length = 567 Score = 113 bits (282), Expect = 6e-24 Identities = 121/424 (28%), Positives = 184/424 (43%), Gaps = 20/424 (4%) Frame = +1 Query: 152041 LRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLVIXXXXXXXXXXXXXXXXXX--ELV 152214 LRPYQ +A++ + R G +VVLPTG+GK++V ELV Sbjct: 4 LRPYQEKALEGIEKAEREGVRRPLVVLPTGTGKTVVFSHGIKNRADRGRSLVLVHRDELV 63 Query: 152215 EQNHAKYRAYGLEADLFSAGLGRKES---ERQVVFGSVQS--VVRSLERFEAHEAWGAFT 152379 Q K G+ A + G+ + + + VV SVQ+ V R L + F Sbjct: 64 RQTIEKI---GMVAPELTTGVVKADENGLDADVVVASVQTAQVDRRLAQLVEAAKRSPFG 120 Query: 152380 LLVIDECHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKV-LGLTATPYRLGQGFI 152556 + +DE H P A S+ +V+ L NP + +G TATP R Sbjct: 121 TVWVDEAHHAP-------------APSWTKVLTGLGSFNPYGPLTVGFTATPER------ 161 Query: 152557 YHRHHHGM-VRGDADCFFQDCVFEQPLRLMV--KQGYLAPPRRVDAALYAEDGEQTRYDF 152727 + G+ R A ++ ++ R + GYL P + A+ E T D Sbjct: 162 -DKKTLGVWERLAAFMSIREAIYGNGKRGKDGHEGGYLVP---ILPAVVVE----TEMDL 213 Query: 152728 SRLSPGRGGGFEEAELNRVVQGHRATPGIIAEVVEQARERRGVMIFAATVAHAREIMGYL 152907 +R+ GG F E +L R ++ A I + A +R+GV F TVA A + L Sbjct: 214 TRVRK-TGGDFSEGDLGREMEESGAIAQIADAYLINAHDRKGVA-FTPTVATAHALAAAL 271 Query: 152908 PAQ--QAALIVGATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTES 153081 A+ + + G T ER A++ K + + N VLT GFD P + + + RPT+ Sbjct: 272 CARGIRTEALDGTTHKDERRAILRRLKTGETQVVTNCGVLTEGFDEPSISCVVVARPTKF 331 Query: 153082 VSLYQQIVGRGLRLAPGKQDCLILDYAG----NPWDLYAP---EVGEPRPDSDAEPVQVE 153240 LY Q++GRG RL PGK+D +ILD + + Y ++ E + + EP + Sbjct: 332 HGLYVQMIGRGTRLYPGKKDLMILDLVAASRRHEFVGYVDLGLDLDEGKKPKEGEPERQA 391 Query: 153241 CPAC 153252 CP C Sbjct: 392 CPTC 395 >ref|NP_076827.1|Csp Length = 66 Score = 89.0 bits (219), Expect = 1e-16 Identities = 42/64 (65%), Positives = 52/64 (81%) Frame = +1 Query: 53695 MATGTVKWFNDAKGFGFISPAEGGDDLFVHFSEIQAEGFKSLQDGQEVSFDVTQGKKGLQ 53874 MA GTVKWFN KGFGFI+ +E G DLF HFS IQ++GFKSL +GQ+V FDV +G++GLQ Sbjct: 1 MANGTVKWFNADKGFGFIT-SEEGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQ 59 Query: 53875 ASNV 53886 A N+ Sbjct: 60 AVNI 63 >ref|NP_049999.1|putative helicase Length = 443 Score = 87.4 bits (215), Expect = 4e-16 Identities = 105/438 (23%), Positives = 174/438 (39%), Gaps = 30/438 (6%) Frame = +1 Query: 152041 LRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLV---IXXXXXXXXXXXXXXXXXXEL 152211 LR YQ V+++ RG+ +V P SGK++V I E+ Sbjct: 3 LRNYQSDLVNDIKQSILRGNKRIMVQSPPRSGKTVVMAHIAKGATDKGNTILFFSHRKEI 62 Query: 152212 VEQNHAKYRAYGLEADLFSAGLGRKESERQVVFGSVQSVVRSLERFEAHEAWGAFTLLVI 152391 EQ ++ G++ +L V SV + R+L+R + ++++I Sbjct: 63 NEQVVNTFKRNGVDMNL-------------VTIDSVTKIARNLDRIQEP------SIILI 103 Query: 152392 DECHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATPYRL-GQGFIYHRH 152568 DE H + A +Y ++I + VL T TP RL G GF Sbjct: 104 DEAHHVK-------------AKTYLKIIEYYSNSI----VLMFTGTPARLDGSGF----- 141 Query: 152569 HHGMVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQTRYDFSRLSPGR 152748 D D V +P++ + G +AP + +L D + L R Sbjct: 142 ---------DDIADDIVLGKPVKWLQDNGNIAPFKYYAPSLI---------DTTNLKK-R 182 Query: 152749 GGGFEEAELNRVVQGHRATPGIIAEVVEQARERRGVMIFAATVAHAREIMGYLPAQ--QA 152922 GG F + ++ ++ R G + E+ + + +++ +V + + Q + Sbjct: 183 GGEFTKKSVDDTMK--RVIYGDVIRHYEKLAKGKQAIVYTHSVEASESVSNTFNEQGYTS 240 Query: 152923 ALIVGATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQI 153102 I G TP R+ ++ F+ +L +VN + T G D P+VD+ +LRPT+S+SLY Q Sbjct: 241 IAISGKTPPEVRDRAMQAFRDGKLTIMVNCELFTEGIDLPNVDVCIMLRPTQSLSLYLQF 300 Query: 153103 VGRGLRLAPGKQDCLILDYAGN-----------PWDLYAP-------EVGEPRPDSDAE- 153225 R L GK +I+D+ GN W L ++GEP + E Sbjct: 301 AMRALNPREGK-TAIIIDHVGNVDRHGLPNADREWSLKGVNKTKKKLKLGEPTTRTCDEC 359 Query: 153226 -----PVQVECPACGHAN 153264 + CP CGH N Sbjct: 360 YATFWSAERICPMCGHEN 377 >ref|NP_049952.1|putative helicase Length = 443 Score = 87.4 bits (215), Expect = 4e-16 Identities = 105/438 (23%), Positives = 174/438 (39%), Gaps = 30/438 (6%) Frame = +1 Query: 152041 LRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLV---IXXXXXXXXXXXXXXXXXXEL 152211 LR YQ V+++ RG+ +V P SGK++V I E+ Sbjct: 3 LRNYQSDLVNDIKQSILRGNKRIMVQSPPRSGKTVVMAHIAKGATDKGNTILFFSHRKEI 62 Query: 152212 VEQNHAKYRAYGLEADLFSAGLGRKESERQVVFGSVQSVVRSLERFEAHEAWGAFTLLVI 152391 EQ ++ G++ +L V SV + R+L+R + ++++I Sbjct: 63 NEQVVNTFKRNGVDMNL-------------VTIDSVTKIARNLDRIQEP------SIILI 103 Query: 152392 DECHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATPYRL-GQGFIYHRH 152568 DE H + A +Y ++I + VL T TP RL G GF Sbjct: 104 DEAHHVK-------------AKTYLKIIEYYSNSI----VLMFTGTPARLDGSGF----- 141 Query: 152569 HHGMVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQTRYDFSRLSPGR 152748 D D V +P++ + G +AP + +L D + L R Sbjct: 142 ---------DDIADDIVLGKPVKWLQDNGNIAPFKYYAPSLI---------DTTNLKK-R 182 Query: 152749 GGGFEEAELNRVVQGHRATPGIIAEVVEQARERRGVMIFAATVAHAREIMGYLPAQ--QA 152922 GG F + ++ ++ R G + E+ + + +++ +V + + Q + Sbjct: 183 GGEFTKKSVDDTMK--RVIYGDVIRHYEKLAKGKQAIVYTHSVEASESVSNTFNEQGYTS 240 Query: 152923 ALIVGATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQI 153102 I G TP R+ ++ F+ +L +VN + T G D P+VD+ +LRPT+S+SLY Q Sbjct: 241 IAISGKTPPEVRDRAMQAFRDGKLTIMVNCELFTEGIDLPNVDVCIMLRPTQSLSLYLQF 300 Query: 153103 VGRGLRLAPGKQDCLILDYAGN-----------PWDLYAP-------EVGEPRPDSDAE- 153225 R L GK +I+D+ GN W L ++GEP + E Sbjct: 301 AMRALNPREGK-TAIIIDHVGNVDRHGLPNADREWSLKGVNKTKKKLKLGEPTTRTCDEC 359 Query: 153226 -----PVQVECPACGHAN 153264 + CP CGH N Sbjct: 360 YATFWSAERICPMCGHEN 377 >ref|NP_056709.1|putative helicase Length = 443 Score = 87.4 bits (215), Expect = 4e-16 Identities = 105/438 (23%), Positives = 174/438 (39%), Gaps = 30/438 (6%) Frame = +1 Query: 152041 LRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLV---IXXXXXXXXXXXXXXXXXXEL 152211 LR YQ V+++ RG+ +V P SGK++V I E+ Sbjct: 3 LRNYQSDLVNDIKQSILRGNKRIMVQSPPRSGKTVVMAHIAKGATDKGNTILFFSHRKEI 62 Query: 152212 VEQNHAKYRAYGLEADLFSAGLGRKESERQVVFGSVQSVVRSLERFEAHEAWGAFTLLVI 152391 EQ ++ G++ +L V SV + R+L+R + ++++I Sbjct: 63 NEQVVNTFKRNGVDMNL-------------VTIDSVTKIARNLDRIQEP------SIILI 103 Query: 152392 DECHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATPYRL-GQGFIYHRH 152568 DE H + A +Y ++I + VL T TP RL G GF Sbjct: 104 DEAHHVK-------------AKTYLKIIEYYSNSI----VLMFTGTPARLDGSGF----- 141 Query: 152569 HHGMVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQTRYDFSRLSPGR 152748 D D V +P++ + G +AP + +L D + L R Sbjct: 142 ---------DDIADDIVLGKPVKWLQDNGNIAPFKYYAPSLI---------DTTNLKK-R 182 Query: 152749 GGGFEEAELNRVVQGHRATPGIIAEVVEQARERRGVMIFAATVAHAREIMGYLPAQ--QA 152922 GG F + ++ ++ R G + E+ + + +++ +V + + Q + Sbjct: 183 GGEFTKKSVDDTMK--RVIYGDVIRHYEKLAKGKQAIVYTHSVEASESVSNTFNEQGYTS 240 Query: 152923 ALIVGATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQI 153102 I G TP R+ ++ F+ +L +VN + T G D P+VD+ +LRPT+S+SLY Q Sbjct: 241 IAISGKTPPEVRDRAMQAFRDGKLTIMVNCELFTEGIDLPNVDVCIMLRPTQSLSLYLQF 300 Query: 153103 VGRGLRLAPGKQDCLILDYAGN-----------PWDLYAP-------EVGEPRPDSDAE- 153225 R L GK +I+D+ GN W L ++GEP + E Sbjct: 301 AMRALNPREGK-TAIIIDHVGNVDRHGLPNADREWSLKGVNKTKKKLKLGEPTTRTCDEC 359 Query: 153226 -----PVQVECPACGHAN 153264 + CP CGH N Sbjct: 360 YATFWSAERICPMCGHEN 377 >ref|NP_795616.1|putative helicase Length = 409 Score = 85.1 bits (209), Expect = 2e-15 Identities = 101/380 (26%), Positives = 157/380 (41%), Gaps = 27/380 (7%) Frame = +1 Query: 152206 ELVEQNHAKYRAYGLEADLFSAGLGRKESERQVVFGSVQSVVRSLERFEAHEAWGAFTLL 152385 E+ EQ + A G+ ++L + G VQS+VR L+ E ++ Sbjct: 23 EINEQVERTFAANGVNSNLLT-------------IGGVQSLVRKLDSLSQPE------VI 63 Query: 152386 VIDECHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATPYRL-GQGFIYH 152562 +IDE H A SY ++I H + VL T TP RL G GF Sbjct: 64 LIDEAHH-------------SKAKSYLKIIDHFKN----AYVLMFTGTPVRLNGDGF--- 103 Query: 152563 RHHHGMVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQTRYDFSRLSP 152742 D D V + ++ + + G +A + YA + D S L Sbjct: 104 -----------DDIADDLVAGKSVKWLQEHGNIA-----NFKYYAP----SMIDNSALKK 143 Query: 152743 GRGGGFEEAELNRVVQGHRATPGIIAEVVEQARERRGVMIFAATV--AHAREIMGYLPAQ 152916 RGG F + +N+ ++ G + + E+ + + +++ +V +H M Sbjct: 144 -RGGEFTKDSVNQSMKS--VIYGDVIKHYEKLAKGKQAIVYTHSVEASHLVSDMFNQAGY 200 Query: 152917 QAALIVGATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQ 153096 Q+ + G TP ERE ++ F+ +L+ LVN + T G D P+VD+ +LRPT+S+SLY Sbjct: 201 QSQSVSGKTPKSEREEAMQAFRDGKLRILVNCELFTEGIDLPNVDVCIMLRPTQSLSLYL 260 Query: 153097 QIVGRGLRLAPGKQDCLILDYAGN-----------PWDL-------YAPEVGEP--RPDS 153216 Q R L GK +I+D+ GN W L + ++GEP R Sbjct: 261 QFAMRPLNPRDGK-IAIIIDHVGNVERFGLPNMDREWRLDGKTKQKQSTKIGEPTTRVCD 319 Query: 153217 DAEPVQVE----CPACGHAN 153264 D CP CGH N Sbjct: 320 DCYATYWSDTRICPECGHEN 339 >ref|NP_511031.1|helicase Length = 418 Score = 84.3 bits (207), Expect = 3e-15 Identities = 85/325 (26%), Positives = 147/325 (45%), Gaps = 8/325 (2%) Frame = +1 Query: 152302 VVFGSVQSVVRSLERFEAHEAWGAFTLLVIDECHRIPPGASAGKVRDDKGASSYHQVIAH 152481 V G VQ++VR L + +L++IDE H + A+SY ++I H Sbjct: 57 VKLGMVQTIVRRLNKTSEP------SLIIIDESHHVL-------------ANSYKKIIHH 97 Query: 152482 LRRHNPRLKVLGLTATPYRLGQGFIYHRHHHGMVRGDADCFFQDCVFEQP-LRLMVKQGY 152658 + KV+G TATP R+ G + GD + D + E+ ++ +++ + Sbjct: 98 FSK----AKVVGFTATPVRINGGGL----------GDIN----DTLIEKVNVKWLIENQF 139 Query: 152659 LAPPRRVDAALYAEDGEQTRYDFSRLSPGRGGGFEEAELNRVVQGHRATPGIIAEVVEQA 152838 LA + YA + QT L+ R G F+ L+ R G + + ++ Sbjct: 140 LAHYK-----YYAPETVQTE----TLNVKRTGEFDMTSLDDQFN-KRMIWGDVIKHYQKL 189 Query: 152839 RERRGVMIFAATVAHAREIMGYLPAQ--QAALIVGATPGREREALIEDFKAQRLKYLVNV 153012 + +++A+++ + ++ A +A I G TP R+ +I+ F+ LK L N+ Sbjct: 190 ADGEQAILYASSIYQSEKMAASFNAAGISSAHIDGKTPKPIRDDIIKQFREGELKVLCNL 249 Query: 153013 AVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKQDCLILDYAGNPWDLYAPE 153192 ++ GFD P + +LRPT+S+SLY Q RG+R GK I+D+ GN P+ Sbjct: 250 DLIGEGFDVPDCSTVIMLRPTQSLSLYIQQSMRGMRYKQGK-TATIIDHVGNVKRFGLPD 308 Query: 153193 VG-----EPRPDSDAEPVQVECPAC 153252 + EPR S++ + C Sbjct: 309 MERTWSLEPRKGSNSTKAEAPVKIC 333 >ref|NP_049421.1|putative helicase Length = 443 Score = 84.0 bits (206), Expect = 4e-15 Identities = 105/438 (23%), Positives = 172/438 (39%), Gaps = 30/438 (6%) Frame = +1 Query: 152041 LRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLV---IXXXXXXXXXXXXXXXXXXEL 152211 LR YQ+ V+ + RG+ +V P SGK++V I E+ Sbjct: 3 LRNYQNDLVNGIKQSILRGNKRIMVQSPPRSGKTVVMAHIAKGATDKGNTVLFFSHRKEI 62 Query: 152212 VEQNHAKYRAYGLEADLFSAGLGRKESERQVVFGSVQSVVRSLERFEAHEAWGAFTLLVI 152391 EQ ++ G++ +L V SV V R+L+R ++++I Sbjct: 63 NEQVVNTFKRNGVDMNL-------------VTIDSVTKVARNLDRISEP------SIILI 103 Query: 152392 DECHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATPYRL-GQGFIYHRH 152568 DE H + A +Y ++I + VL T TP RL G GF Sbjct: 104 DEAHHVK-------------AKTYLKIIEYYINSI----VLMFTGTPARLDGSGF----- 141 Query: 152569 HHGMVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQTRYDFSRLSPGR 152748 D D V + ++ + + G +AP + +L D + L R Sbjct: 142 ---------DDIADDIVLGKSVKWLQENGNIAPFKYYAPSLI---------DTTNLKK-R 182 Query: 152749 GGGFEEAELNRVVQGHRATPGIIAEVVEQARERRGVMIFAATVAHAREIMGYLPAQ--QA 152922 GG F + ++ ++ R G + E+ + + +++ +V + + + Sbjct: 183 GGEFTKKSVDDTMK--RVIYGDVIRHYEKLAKGKQAIVYTHSVEASESVSNTFKKNGYTS 240 Query: 152923 ALIVGATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQI 153102 I G TP RE ++ F+ + L +VN + T G D P+VD+ +LRPT+S+SLY Q Sbjct: 241 IAISGKTPPEVRERAMQAFRDRELTIMVNCELFTEGIDLPNVDVCIMLRPTQSLSLYLQF 300 Query: 153103 VGRGLRLAPGKQDCLILDYAGN-----------PWDLYA-------PEVGEPRPDSDAE- 153225 R L GK +I+D+ GN W L ++GEP + E Sbjct: 301 AMRALNPREGK-TAIIIDHVGNVDRHGLPNADREWSLKGINKTKKKLKLGEPTTRTCDEC 359 Query: 153226 -----PVQVECPACGHAN 153264 + CP CGH N Sbjct: 360 YATFWSAERICPLCGHEN 377 >ref|NP_695088.1|putative helicase Length = 443 Score = 83.6 bits (205), Expect = 5e-15 Identities = 103/438 (23%), Positives = 173/438 (39%), Gaps = 30/438 (6%) Frame = +1 Query: 152041 LRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLV---IXXXXXXXXXXXXXXXXXXEL 152211 LR YQ V+++ RG+ +V P SGK++V I E+ Sbjct: 3 LRNYQSDLVNDIKQSILRGNKRIMVQSPPRSGKTVVMAHIAKGATDKGNTILFFSHRKEI 62 Query: 152212 VEQNHAKYRAYGLEADLFSAGLGRKESERQVVFGSVQSVVRSLERFEAHEAWGAFTLLVI 152391 EQ ++ G++ +L V SV + R+L+R + ++++I Sbjct: 63 NEQVVNTFKRNGVDMNL-------------VTIDSVTKIARNLDRIQEP------SIILI 103 Query: 152392 DECHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATPYRL-GQGFIYHRH 152568 DE H + A +Y ++I + VL T TP RL G GF Sbjct: 104 DEAHHVK-------------AKTYLKIIEYYSNSI----VLMFTGTPARLDGSGF----- 141 Query: 152569 HHGMVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQTRYDFSRLSPGR 152748 D D V + ++ + G +AP + +L D + L R Sbjct: 142 ---------DDIADDIVLGKSVKWLQDNGNIAPFKYYAPSLI---------DTTNLKK-R 182 Query: 152749 GGGFEEAELNRVVQGHRATPGIIAEVVEQARERRGVMIFAATVAHAREIMGYLPAQ--QA 152922 GG F + ++ ++ R G + E+ + + +++ +V + + Q + Sbjct: 183 GGEFTKKSVDDTMK--RVIYGDVIRHYEKLAKGKQAIVYTHSVEASESVSNTFNEQGYTS 240 Query: 152923 ALIVGATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQI 153102 I G TP R+ ++ F+ +L +VN + T G D P+VD+ +LRPT+S+SLY Q Sbjct: 241 IAISGKTPPEVRDRAMQAFRDGKLTIMVNCELFTEGIDLPNVDVCIMLRPTQSLSLYLQF 300 Query: 153103 VGRGLRLAPGKQDCLILDYAGN-----------PWDLYAP-------EVGEPRPDSDAE- 153225 R L GK +I+D+ GN W + ++GEP + E Sbjct: 301 AMRALNPREGK-TAIIIDHVGNVDRHGLPNADREWSIKGVNKTKKKLKLGEPTTRTCDEC 359 Query: 153226 -----PVQVECPACGHAN 153264 + CP CGH N Sbjct: 360 YATFWSAERICPMCGHEN 377 >ref|NP_795446.1|putative DEAD box family helicase Length = 409 Score = 82.4 bits (202), Expect = 1e-14 Identities = 100/380 (26%), Positives = 156/380 (41%), Gaps = 27/380 (7%) Frame = +1 Query: 152206 ELVEQNHAKYRAYGLEADLFSAGLGRKESERQVVFGSVQSVVRSLERFEAHEAWGAFTLL 152385 E+ EQ + A G+ ++L + G VQS+VR L+ E ++ Sbjct: 23 EINEQVERTFAANGVNSNLLT-------------IGGVQSLVRKLDSLSQPE------VI 63 Query: 152386 VIDECHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATPYRL-GQGFIYH 152562 +I E H A SY ++I H + VL T TP RL G GF Sbjct: 64 LIGEAHH-------------SKAKSYLKIIDHFKN----AYVLMFTGTPVRLNGDGF--- 103 Query: 152563 RHHHGMVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQTRYDFSRLSP 152742 D D V + ++ + + G +A + YA + D S L Sbjct: 104 -----------DDIADDLVAGKSVKWLQEHGNIA-----NFKYYAP----SMIDNSALKK 143 Query: 152743 GRGGGFEEAELNRVVQGHRATPGIIAEVVEQARERRGVMIFAATV--AHAREIMGYLPAQ 152916 RGG F + +N+ ++ G + + E+ + + +++ +V +H M Sbjct: 144 -RGGEFTKDSVNQSMKS--VIYGDVIKHYEKLAKGKQAIVYTHSVEASHLVSDMFNQAGY 200 Query: 152917 QAALIVGATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQ 153096 Q+ + G TP ERE ++ F+ +L+ LVN + T G D P+VD+ +LRPT+S+SLY Sbjct: 201 QSQSVSGKTPKSEREEAMQAFRDGKLRILVNCELFTEGIDLPNVDVCIMLRPTQSLSLYL 260 Query: 153097 QIVGRGLRLAPGKQDCLILDYAGN-----------PWDL-------YAPEVGEP--RPDS 153216 Q R L GK +I+D+ GN W L + ++GEP R Sbjct: 261 QFAMRPLNPRDGK-IAIIIDHVGNVERFGLLNMDREWRLDGKTKQKQSTKIGEPTTRVCD 319 Query: 153217 DAEPVQVE----CPACGHAN 153264 D CP CGH N Sbjct: 320 DCYATYWSDTRICPECGHEN 339 >ref|NP_680515.1|putative helicase Length = 455 Score = 79.3 bits (194), Expect = 1e-13 Identities = 107/438 (24%), Positives = 178/438 (40%), Gaps = 32/438 (7%) Frame = +1 Query: 152041 LRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLVIXXXXXXXXXXXXXXXXXX---EL 152211 L PYQ + V+ G+ ++V P GSGKS++I EL Sbjct: 4 LHPYQKELVNQAREKLAAGNKSVLLVSPAGSGKSVIIAEIARLAVERSGHVMFMVHRQEL 63 Query: 152212 VEQNHAKYRAYGLEADLFSAGLGRKESERQVVFGSVQSVVRSLERFEAHEAWGAFTLLVI 152391 V Q ++A E DL + + + G + + + L R +L++ Sbjct: 64 VNQIVQTFQAD--EIDLQATTI--------MTVGKIANRLNRLPRP---------SLIIT 104 Query: 152392 DECHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATPYRL-GQGFIYHRH 152568 DE H A +Y ++ + PRL G +A+P+R+ GQG Sbjct: 105 DESHH-------------SLAKTYRKIYSFYA-DVPRL---GFSASPWRMNGQGL--GNV 145 Query: 152569 HHGMVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQTRYDFSRLSPGR 152748 + MV G + ++ ++ YLAP YA T D +L Sbjct: 146 YESMVEGPS------------VKWLIDHQYLAP-----YDYYAP----TLIDVQKLQTSS 184 Query: 152749 GGGFEEAELNRVVQGHRATPGIIAEVVEQARERRGVMIFAATVAHAREIMGYLPAQQAAL 152928 G + ++ V +A G + + R +++A ++ +++++ A Q+A Sbjct: 185 TGDYTNKSMDAAVP--KAIFGDVVSHYQHLAGGRQAIVYAHSIEASKQVV---EAFQSAG 239 Query: 152929 IVGA-----TPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY 153093 I TP +R+ ++ DFKA ++ L NV +++ GF+ P V +I +LRPT S+ L Sbjct: 240 ITAVHADAKTPKGQRDRIMADFKAGKITILSNVDLISEGFNVPDVGVIIMLRPTASLVLD 299 Query: 153094 QQIVGRGLRLAPGKQDCLILDYAGNPWDLYAPE------------------VGEPRPDSD 153219 Q RG+R PGK+ +I+D+ N + P+ G P D Sbjct: 300 IQQSMRGMRYKPGKRS-IIIDHVANAYRFGLPDTEHEWTLNDRPKKKKRDNTGPPIKTCD 358 Query: 153220 A----EPVQVE-CPACGH 153258 A PVQ + CP CGH Sbjct: 359 ACYAVIPVQCKICPICGH 376 >ref|NP_050128.1|putative DEAH-family helicase Length = 455 Score = 77.8 bits (190), Expect = 3e-13 Identities = 89/424 (20%), Positives = 166/424 (39%), Gaps = 20/424 (4%) Frame = +1 Query: 152041 LRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLV---IXXXXXXXXXXXXXXXXXXEL 152211 +R YQ + +D++ + G ++ P GSGKS+ + EL Sbjct: 5 IRSYQKKLIDDLRLSLKHGHKNVLIQSPAGSGKSITMAELAKRITSNGERVLFVVHRREL 64 Query: 152212 VEQNHAKYRAYGLEADLFSAGLGRKESERQVVFGSVQSVVRSLERFEAHEAWGAFTLLVI 152391 V+Q + ++G+ +L + VQ+ R LE+ +++ Sbjct: 65 VKQIKNTFSSWGVNMNLCEIYM-------------VQTASRRLEKLMTPN------YILV 105 Query: 152392 DECHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATPYRL-GQGFIYHRH 152568 DE H A +Y ++ H + + +LG TATP RL G+GF Sbjct: 106 DEAHH-------------SLAKTYKKINNHFKNAH----ILGFTATPVRLSGKGF----- 143 Query: 152569 HHGMVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQTRYDFSRLSPGR 152748 + D V + +++ YLAP L D ++L Sbjct: 144 ---------KDIYDDLVLGPKISWLIENHYLAPYTYYSVNLI---------DQTKLKKSS 185 Query: 152749 GGGFEEAELNRVVQGHRATPGIIAEVVEQARERRGVMIFAATVAHAREIM-----GYLPA 152913 G + + G G + + + +I++ +V ++I +PA Sbjct: 186 TGDYTHKSIENA--GKNIVYGDVIQSYHKFANNTKAIIYSYSVHSCQQIAKEFNKNNIPA 243 Query: 152914 QQAALIVGATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY 153093 ++ + G T +R+ ++DF+ ++K LVN + G D P + + +LRPT+S+SL+ Sbjct: 244 KE---VDGKTKKEDRDKAMQDFRDGKIKILVNAELYGEGVDVPDCETVIMLRPTQSLSLF 300 Query: 153094 QQIVGRGLRLAPGKQDCLILDYAGNPWDLYAPEVG----------EPRPDSDAEPVQVE- 153240 Q R +R P KQ +I+D N P++ P+ + ++ + ++ Sbjct: 301 IQQSMRCMRYQPDKQ-AIIIDQVANYTRFGLPDMDRVWTLEDRAKHPQREGGSDGIAIKT 359 Query: 153241 CPAC 153252 CP C Sbjct: 360 CPNC 363 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 71.6 bits (174), Expect = 2e-11 Identities = 67/234 (28%), Positives = 97/234 (41%), Gaps = 18/234 (7%) Frame = -1 Query: 63967 PIVFHHGWPLSADDWDSQMLFFLSQGYRVIAFDRRGHGRSDQTDTGNDMDTYASDTAELV 63788 P+VF HG +SA ++ + G+RVIA D HGRS TG+ ++ T + + Sbjct: 24 PLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTGHTVEDMTRVTLKTL 83 Query: 63787 NALDLKDAVHIGHSTGGGVVARYVARAESGRVAKAVLIGAVTPLMLQTSANPEGTPKEVF 63608 + LD+ A+ GHS GGG+V AR RVA AVL+ A +E Sbjct: 84 DELDIHRAIFAGHSMGGGMVVEIAAR-HPHRVAAAVLLDA-------------AAGQEHH 129 Query: 63607 DGFRSALTANRAQFFKDIPAGPFYGFNRDGAVVSQGLIDNWWRQGM-EGGAKAQY----- 63446 D + A A F + G V+ + D + + + G K + Sbjct: 130 DNIKVGHYATLA----------FRAAKKLGEAVTDIVGDGYEAMHLRDTGEKLSFLGMLR 179 Query: 63445 DSIE---------AFSETDFTDDLQAI---TIPVLVMHGEDDQIVPIAASAHKA 63320 DS+ A + D T L A+ +P V+HG DQIVP A A Sbjct: 180 DSVSGLRFVRAAFALMKADTTPLLHAMYRHGVPTAVLHGLHDQIVPYEAGLSTA 233 >ref|NP_817650.1|gp61 Length = 274 Score = 71.2 bits (173), Expect = 3e-11 Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 4/220 (1%) Frame = -1 Query: 63967 PIVFHHGWPLSADDWDSQMLFFLSQGYRVIAFDRRGHGRSDQTDTGNDMDTYASDTAELV 63788 P+VF HG +SA ++ ++ +G+ V A D HGR+D G+ ++ T + Sbjct: 26 PLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFGHTVEEMTRVTLRAL 85 Query: 63787 NALDLKDAVHIGHSTGGGVVARYVARAESGRVAKAVLIGAVTPLMLQTSANPEGTPKEVF 63608 +AL + AV +GHS GGG+VA R RV A+L+ A KE Sbjct: 86 DALGIDQAVFVGHSMGGGMVAEIAPRYPE-RVLAAILLDA-------------AAGKEHH 131 Query: 63607 DGFRSALTANR--AQFFKDIPAGPFYGFNRDGAVVSQGLIDNWWRQGMEG--GAKAQYDS 63440 + L A + + D+ + A GL R G +A Y Sbjct: 132 ANLKDPLRATQRLSGAVVDVLGDTYQAIKLRSATEGLGLAQT-LRSSFAGFRFVRAAYAL 190 Query: 63439 IEAFSETDFTDDLQAITIPVLVMHGEDDQIVPIAASAHKA 63320 ++A +E ++A+ + V+HG DQIVP AA A Sbjct: 191 LKADTE-PLLKAMKALDVQTAVIHGLSDQIVPFAAGKSAA 229 >ref|NP_891789.1|dCMP deaminase Length = 168 Score = 68.9 bits (167), Expect = 1e-10 Identities = 53/166 (31%), Positives = 76/166 (45%) Frame = +3 Query: 30972 MQIAYTAKTNSGCISRQVGAVVTDSDSSIKAVGWNDVPHGQVPCALRSVEGVIRSFDDEV 31151 MQIAY NS C+S +VGA++ + D I + G+N P GQV C+ + + DD+ Sbjct: 7 MQIAYLIAKNSKCVSWKVGALI-EKDGRIISTGFNGTPAGQVNCSCHAHKS--GWLDDD- 62 Query: 31152 YSEYERNNKEFREKIIEVSGWYEGADLKGRNLSYCFKDVKNSVDGKGNQVHTRSLHAEEN 31331 K EK E S W + KN + HAE N Sbjct: 63 -------GKMIPEKRPEHSAWSQ----------------KNEI------------HAELN 87 Query: 31332 AFLQISKYGGMSVQGGSLFTTASPCELCAKKAFQLGVERIVYIDPY 31469 A L ++ G+S++G S++ TASPC CAK G++ + Y D Y Sbjct: 88 AILFAAR-NGVSIEGASMWCTASPCPDCAKAIANSGIKHLYYCDTY 132 >ref|YP_024899.1|putative helicase Length = 614 Score = 66.2 bits (160), Expect = 8e-10 Identities = 109/486 (22%), Positives = 190/486 (39%), Gaps = 10/486 (2%) Frame = +1 Query: 152038 SLRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLVIXXXXXXXXXXXXXXXXXXELVE 152217 +LR YQ Q D V + RG + V TGSGK++ ELV Sbjct: 48 ALRSYQQQIKDAVFDAWSRGARTVMAVSATGSGKTVTAEAIASEVQGEGVAMAHRRELVG 107 Query: 152218 QNHAKYRAYGLEADLFSAGLGRKESERQVVFGSVQSVVRSLERFEAHEAWGAFTLLVIDE 152397 Q ++ G+ ++ + K++ +V ++ + ++ + H W ++ + Sbjct: 108 QLSLQWARAGIPHNIIAP----KKTRDIIVRRHMKKLGKTT--YTPHAQWSIASVDTL-- 159 Query: 152398 CHRIPPGASAGKVRDDKGASSYHQVIAH-----LRRHNPRLKVLGLTATPYRL-GQGFIY 152559 R +V++ G +H + ++ + R + + TATP R G+G Sbjct: 160 AVRADADGYLKRVKNLIGDEGHHFLRSNKWGKAIARLTSLERGVLFTATPERPDGKGL-- 217 Query: 152560 HRHHHGMVRGDADCFFQDCVFE-QPLRLMVKQGYLAPPRRVDAALYAEDGEQTRYDFSRL 152736 D C D + E P+R ++ QGYL +D L + + Sbjct: 218 ------STWTDGIC---DAMIEGPPMRWLIDQGYL-----LDYWLETVKPSDLNLEGVEI 263 Query: 152737 SPGRGGGFEEAELNRVVQGHRATPG-IIAEVVEQARERRGVMIFAATVAHAREIMGYLPA 152913 S G + +L V+ ++ G ++ V +A +R V FA + HA I L A Sbjct: 264 SAATGD-YNARQLAEAVKKSKSIVGDVVNTYVSKAWGQRWVT-FAVDIEHATRICEALRA 321 Query: 152914 QQAALIVGATPG--REREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVS 153087 +V ++ ERE+ ++ + + LVNV + GFD P++ I++ RPTES Sbjct: 322 AGVPSMVVSSDSTDEERESALQGLEDGTIWNLVNVDLFGEGFDLPNIAGISMARPTESFI 381 Query: 153088 LYQQIVGRGLRLAPGKQDCLILDYAGNPWDLYAPEVGEPRPDSDAEPVQVECPACGHANL 153267 +Y Q GR LRL LI D+ + W+ +P + +P G+ + Sbjct: 382 VYAQQWGRVLRL-------LISDFHQSIWETLSPAMRLEIIAKSPKPRGRIFDHAGNFHR 434 Query: 153268 FWGKRDGELVIEHYGRRCQGLLEDTDGRRRQCDFRFRFKVCDQCGAENDIAARACHQCDE 153447 G D + V + GR + R+ + C +C + C C E Sbjct: 435 HEGPPDKQRVWKFDGR---------GSKSRKAGDEIPLRGCTKCFKPFERFHNVCPYCGE 485 Query: 153448 RLVDPD 153465 + PD Sbjct: 486 PVPAPD 491 >ref|NP_861914.1|Cd dCMP deaminase Length = 169 Score = 65.9 bits (159), Expect = 1e-09 Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 2/168 (1%) Frame = +3 Query: 30972 MQIAYTAKTNSGCISRQVGAVVTDSDSSIKAVGWNDVPHGQVPCALRSVEGVIRSFDDEV 31151 +QIAY S C S +VGAV+ + D I + G+N P G V C Sbjct: 7 LQIAYLISQESKCCSWKVGAVI-EKDGRIISTGYNGSPAGGVNCC--------------- 50 Query: 31152 YSEYERNNKEFREKIIE--VSGWYEGADLKGRNLSYCFKDVKNSVDGKGNQVHTRSLHAE 31325 E+ N + K V+G EG GR ++ + + +HAE Sbjct: 51 --EHASENGWLKNKSSPAIVAGHKEGTTAFGRADNFVLAKEHRAAHSAWSA--NNEIHAE 106 Query: 31326 ENAFLQISKYGGMSVQGGSLFTTASPCELCAKKAFQLGVERIVYIDPY 31469 NA L ++ G S++G +L+TT SPC C K Q G++++VY + Y Sbjct: 107 LNAILFAARKGN-SIEGATLYTTLSPCPDCTKAITQSGIKKVVYAELY 153 >ref|NP_944156.1|Cd dCMP deaminase Length = 182 Score = 63.9 bits (154), Expect = 4e-09 Identities = 43/168 (25%), Positives = 74/168 (44%) Frame = +3 Query: 30972 MQIAYTAKTNSGCISRQVGAVVTDSDSSIKAVGWNDVPHGQVPCALRSVEGVIRSFDDEV 31151 +Q A+ S C+S +VGA+++ D I + G+N GQ C Sbjct: 7 LQNAFLVAQESKCVSYRVGAIISKDDRPISS-GYNGTISGQPNC---------------- 49 Query: 31152 YSEYERNNKEFREKIIEVSGWYEGADLKGRNLSYCFKDVKNSVDGKGNQVHTRSLHAEEN 31331 +++ E +GW E D+ G + ++ D + +HAE N Sbjct: 50 ------------DEVAEENGWAEYVDVPGVGKELRLRQDRS--DEYSAWAKSNVIHAEMN 95 Query: 31332 AFLQISKYGGMSVQGGSLFTTASPCELCAKKAFQLGVERIVYIDPYPG 31475 A L + +GG S++G +++ T +PC CAK Q ++ +VY + Y G Sbjct: 96 AIL-FAAHGGKSIEGATMYCTMAPCPECAKTIAQAKIKTLVYCEDYNG 142 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 58.5 bits (140), Expect = 2e-07 Identities = 37/104 (35%), Positives = 51/104 (49%) Frame = -1 Query: 146104 RYEAAFKEAARDTGFDWKLLAALGYQESHWKPRATSPTGVRGLMMLTNDTAAEVGVTNRL 145925 +Y + AA D L+AA+ QES + +A S G GLM L TA +GV N Sbjct: 1421 KYSSYINSAASKYNVDPALIAAVIQQESGFNAKARSGVGAMGLMQLMPATAKSLGVNNAY 1480 Query: 145924 DPEQSIEGGATYLLHVKGRLQEEITEPDRTWMALAAYNVGLGHL 145793 DP Q++ GG YL + + + ALAAYN G G++ Sbjct: 1481 DPYQNVMGGTKYLAQQLEKFGGNVEK------ALAAYNAGPGNV 1518 >ref|NP_932553.1|dCMP deaminase Length = 172 Score = 57.0 bits (136), Expect = 5e-07 Identities = 45/167 (26%), Positives = 68/167 (40%) Frame = +3 Query: 30969 VMQIAYTAKTNSGCISRQVGAVVTDSDSSIKAVGWNDVPHGQVPCALRSVEGVIRSFDDE 31148 V+Q AY S C+S +VGA++T D I + G+N P G + DD Sbjct: 6 VLQHAYIVAQESHCVSWKVGAIIT-KDGRIISTGYNGTPAGGH-----------ENCDDH 53 Query: 31149 VYSEYERNNKEFREKIIEVSGWYEGADLKGRNLSYCFKDVKNSVDGKGNQVHTRSLHAEE 31328 + +GW D + L ++ N +HAE Sbjct: 54 A----------------KAAGWL---DPETGKLKAMYRQAHNEWSS------CNEIHAEL 88 Query: 31329 NAFLQISKYGGMSVQGGSLFTTASPCELCAKKAFQLGVERIVYIDPY 31469 NA L +K G S+ G ++ T SPC CAK Q G++++ Y + Y Sbjct: 89 NAILYAAK-SGQSIDGAEMYVTVSPCRECAKAIAQSGIKKVFYNELY 134 >ref|NP_049828.1|Cd dCMP deaminase Length = 193 Score = 56.6 bits (135), Expect = 7e-07 Identities = 48/178 (26%), Positives = 74/178 (41%), Gaps = 11/178 (6%) Frame = +3 Query: 30969 VMQIAYTAKTNSGCISRQVGAVVTDSDSSIKAVGWNDVPHGQVPCALRSVEGVIRSFDDE 31148 V+QIAY S C S +VGAV+ + + I + G+N P G V C + E Sbjct: 6 VLQIAYLVSQESKCCSWKVGAVI-EKNGRIISTGYNGSPAGGVNCCDYAAE--------- 55 Query: 31149 VYSEYERNNKEFREKIIEVSGWY----EGADLKGRN---LSYCFKD----VKNSVDGKGN 31295 GW + A ++G +S+ D K Sbjct: 56 -------------------QGWLLNKPKHAIIQGHKPECVSFGSTDRFVLAKEHRSAHSE 96 Query: 31296 QVHTRSLHAEENAFLQISKYGGMSVQGGSLFTTASPCELCAKKAFQLGVERIVYIDPY 31469 +HAE NA L ++ G S++G +++ T SPC CAK Q G++++VY + Y Sbjct: 97 WSSKNEIHAELNAILFAAR-NGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETY 153 >ref|NP_052116.1|internal virion protein D Length = 1320 Score = 55.8 bits (133), Expect = 1e-06 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 7/130 (5%) Frame = -1 Query: 146101 YEAAFKEAARDTGFDWKLLAALGYQESHWKPRATSPTGVRGLMMLTNDTAAEVGV----- 145937 ++ F++AA G + LL L + ES + P+A SPTG +GLM T TA +G+ Sbjct: 11 FDGLFQKAADKHGVSYDLLRKLAFNESSFNPKAKSPTGPKGLMQFTKGTATALGLKVTDA 70 Query: 145936 --TNRLDPEQSIEGGATYLLHVKGRLQEEITEPDRTWMALAAYNVGLGHLYDAQKITEMQ 145763 +R +PE +++ A +L + + + + A AYN G G +MQ Sbjct: 71 DDDDRYNPELAVDAAARHLSDLIRKYDGDELK------AALAYNQGEGR----NGAPQMQ 120 Query: 145762 GGDPYKWADV 145733 D WA + Sbjct: 121 AYDKGDWASI 130 >ref|YP_024695.1|gp22 Length = 203 Score = 54.7 bits (130), Expect = 3e-06 Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 18/143 (12%) Frame = -1 Query: 146116 ARLPRYEAAFK-EAARDTGFDWKL------LAALGYQESHWKPRATSPTGVRGLMMLTND 145958 A++P A++ E R+ W + AA +QES W+ A S G RG+ Sbjct: 20 AQVPAEALAYRAELTRNARAVWGMDAPVSSFAAQIHQESRWRADAVSVVGARGMSQFMPS 79 Query: 145957 TA--------AEVGVTNRLDPEQSIEGGATYLLHVKGRLQEEITEP---DRTWMALAAYN 145811 T AE+G +P SI Y H L E IT +R M L+AYN Sbjct: 80 TVDWIAGAYPAELGEAQPFNPSWSIRALVRYDRH----LWERITAAGACERMAMTLSAYN 135 Query: 145810 VGLGHLYDAQKITEMQGGDPYKW 145742 GLG +Y Q++T G D +W Sbjct: 136 GGLGWVYRDQRVTAAGGADRQRW 158 >ref|NP_040700.1|hypothetical protein Length = 265 Score = 51.6 bits (122), Expect = 2e-05 Identities = 29/65 (44%), Positives = 35/65 (53%) Frame = -1 Query: 146080 AARDTGFDWKLLAALGYQESHWKPRATSPTGVRGLMMLTNDTAAEVGVTNRLDPEQSIEG 145901 A+ D +L+A + ES PR TS G GLM L TA +GVTN DP Q+I G Sbjct: 14 ASAQYNLDPRLVAGVVQTESSGNPRTTSGVGAMGLMQLMPATAKSLGVTNAYDPTQNIYG 73 Query: 145900 GATYL 145886 GA L Sbjct: 74 GAALL 78 >ref|YP_164061.1|endolysin Length = 264 Score = 48.5 bits (114), Expect = 2e-04 Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 16/149 (10%) Frame = -1 Query: 146134 FIRHAQA-RLPRYEAAFKEA-ARDTGFDWKLLAALG------YQESHWKPRATSPTGVRG 145979 F A+A +PR ++ R +W L A + +QES W+ A SP G +G Sbjct: 71 FFSSAKADEIPRAAEQYRRVLVRAAHAEWGLSAPIATFGAQVHQESRWRADARSPVGAQG 130 Query: 145978 LMMLTNDTA--------AEVGVTNRLDPEQSIEGGATYLLHVKGRLQEEITEPDRTWMAL 145823 L TA A +G +P ++ TY + R Q +E DR L Sbjct: 131 LAQFMPGTAEWIAGLYPAALGTNQPFNPGWALRALVTYDRWLYDRNQAS-SECDRWAFVL 189 Query: 145822 AAYNVGLGHLYDAQKITEMQGGDPYKWAD 145736 +AYN G G + +K+ G D W D Sbjct: 190 SAYNGGQGWVNRDRKLASASGADQLAWFD 218 >ref|NP_813780.1|internal virion protein D Length = 1392 Score = 48.1 bits (113), Expect = 2e-04 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 3/119 (2%) Frame = -1 Query: 146101 YEAAFKEAARDTGFDWKLLAALGYQESHWKPRATSPTGVRGLMMLTNDTAAEVGVT---N 145931 Y+ A ++AA G ++ L + ES + P A SPTG GL T T G+ + Sbjct: 17 YDDAIRQAADANGVPYEYLHKKIFIESSFNPDAKSPTGPLGLGQFTKATGKAYGLMTDED 76 Query: 145930 RLDPEQSIEGGATYLLHVKGRLQEEITEPDRTWMALAAYNVGLGHLYDAQKITEMQGGD 145754 RLDP +SI A Y + G + ++ + AYN G G L A ++ + GD Sbjct: 77 RLDPIKSINASAQYTRDLMGTYKGDMLK------VALAYNQGNGRL-GAPQLAALDRGD 128 >ref|NP_899367.1|dCMP deaminase Length = 150 Score = 45.8 bits (107), Expect = 0.001 Identities = 41/168 (24%), Positives = 66/168 (39%) Frame = +3 Query: 30972 MQIAYTAKTNSGCISRQVGAVVTDSDSSIKAVGWNDVPHGQVPCALRSVEGVIRSFDDEV 31151 + IA + S C +QVGAV+ +D I G+N P G + C Sbjct: 14 LDIAKSFAKKSTCKQKQVGAVIVKNDRIISH-GYNGTPSGMLHC---------------- 56 Query: 31152 YSEYERNNKEFREKIIEVSGWYEGADLKGRNLSYCFKDVKNSVDGKGNQVHTRSLHAEEN 31331 ++ +F DL R S ++H +HAE+N Sbjct: 57 -----KDTADF-------------GDLTHRQWS---------------EIH--EIHAEQN 81 Query: 31332 AFLQISKYGGMSVQGGSLFTTASPCELCAKKAFQLGVERIVYIDPYPG 31475 A ++ G+S +G +++ TASPC CAK G++ ++ Y G Sbjct: 82 AICYAAR-AGISTEGATMYVTASPCHNCAKLIVAAGIKILIVGSIYSG 128 >ref|NP_047971.2|gp26 Length = 174 Score = 45.1 bits (105), Expect = 0.002 Identities = 21/51 (41%), Positives = 33/51 (64%) Frame = +3 Query: 55545 VLSGALSPGDRLPSERELSLTLGVGRPLLREVMRSLNMLGVLDIRHGKGAF 55697 + +G PGD+LPSER + LG+GR LR+V+ L G+L++ H + A+ Sbjct: 34 IATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGILEV-HQRSAY 83 >ref|NP_046572.1|ABC transporter Length = 705 Score = 43.1 bits (100), Expect = 0.008 Identities = 42/184 (22%), Positives = 81/184 (44%), Gaps = 12/184 (6%) Frame = -1 Query: 114292 LKGVDLEIRRGEIFALLGPNGAGKTTLISIICGLVNASAGRVLVDGHDIVE-DYRAARRQ 114116 ++ ++L + R + ++G +G GK+T + L + ++G DI D+ + R++ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 114115 IGLVPQELTSDAFATVWNTVSFSRGLFGKRSDPAHIERVL------RSLSLWDKRRSKMI 113954 I + D ++ G+ D IE + DK+ S + Sbjct: 559 IVYI------DENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKL 612 Query: 113953 T-----LSGGMKRRVLIAKALAHEPQILFLDEPTAGVDVALRRDMWNVVRDLRASGVTVI 113789 + LS G K+R+ +A+A+ H+PQ+L LDE + +D + ++ L +I Sbjct: 613 SENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYET---LHRMDCLII 669 Query: 113788 LTTH 113777 L TH Sbjct: 670 LITH 673 >ref|NP_817627.1|gp38 Length = 127 Score = 42.4 bits (98), Expect = 0.013 Identities = 43/171 (25%), Positives = 64/171 (37%), Gaps = 2/171 (1%) Frame = +3 Query: 30951 PSSMERVMQIAYTAKTNSGCISRQVGAVVTDSDSSIKAVGWNDVPHGQVPCAL--RSVEG 31124 P+ E ++IA T S C QVGAVV D ++A G+N P G+ C+ R G Sbjct: 3 PTWDEYFLEIAKTVAIRSDCERSQVGAVVV-KDRRVRATGYNGAPAGRPGCSTCPRRTSG 61 Query: 31125 VIRSFDDEVYSEYERNNKEFREKIIEVSGWYEGADLKGRNLSYCFKDVKNSVDGKGNQVH 31304 I S+Y+ G G V Sbjct: 62 AIPG-----VSDYD--------------------------------------SGVGRCV- 77 Query: 31305 TRSLHAEENAFLQISKYGGMSVQGGSLFTTASPCELCAKKAFQLGVERIVY 31457 ++HAE NA L + + G +L+ T +PC+ C K G+ ++Y Sbjct: 78 --AVHAEANALLYCDR---EDLIGATLYITRAPCDGCRKLIDAAGIVNVIY 123 >ref|NP_075289.1|gp22 Length = 823 Score = 42.4 bits (98), Expect = 0.013 Identities = 48/166 (28%), Positives = 73/166 (43%) Frame = -1 Query: 143293 ELADAKDYLPYGLGYVDTTRLATLLTGSQDLMIQAFRAFAEQTQGQAPEPVSQSCREDAT 143114 EL A + L GLG L +L ++++ Q F AF E T G AP + A Sbjct: 562 ELIPAGEALMEGLGTGIENGLDPVLDRAREIAKQIFSAFKE-TFGTAPTSL-------AF 613 Query: 143113 RLASRMPRLSAGYTTLDAARTEQRFDVSLAEDITAPLASLTSTLPGLGNDSLESPFDLAI 142934 L S LS T+L++ T R L +TAP A L S LG+D + +L + Sbjct: 614 NLGSMQGDLSGLQTSLESTATASR---DLTSSLTAPTAELASGSSLLGDDVKDQLDELKL 670 Query: 142933 ALPMNDLRDLLTQQIQHVRTAPFSCSALAELNNDLDELGRQANMLA 142796 A D +L +Q++ + S A + + +D L + + LA Sbjct: 671 AY---DQLELQRKQLKVQKNEAGSKEDKAAIQDKIDALQAEKDKLA 713 >ref|YP_024895.1|putative membrane protein Length = 93 Score = 39.7 bits (91), Expect = 0.085 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Frame = +3 Query: 72042 PERRNQL-LDTALQIVREEGADRLTLGHLAVRAGVSKPVAYDHFGTRSQLLIALYKL-ID 72215 PE R L LD A ++V+++G + T +A AGV+ + +FG R++L L+KL +D Sbjct: 3 PEARKALILDAAYKLVKKQGFKKATRTAIAEAAGVTAGLVGVYFGKRAELRTTLFKLAVD 62 Query: 72216 RRQSEALRETL 72248 + + +R+ L Sbjct: 63 NKDVKLIRDGL 73 >ref|NP_046853.1|putative deoxycytidinylate deaminase Length = 128 Score = 38.9 bits (89), Expect = 0.14 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 4/85 (4%) Frame = +3 Query: 31215 YEGADLKGRNLSYCFKDVKNSVDG----KGNQVHTRSLHAEENAFLQISKYGGMSVQGGS 31382 Y GA S C + + +V G ++HAE NA L + + G + Sbjct: 43 YNGAPAGAAGCSTCPRRLSGAVPGVSDYSSGATRCVAVHAEANALLYCDRE---DLIGAT 99 Query: 31383 LFTTASPCELCAKKAFQLGVERIVY 31457 L+ T PC C+ G+ER+VY Sbjct: 100 LYVTREPCYACSNLIAASGIERVVY 124 >ref|YP_024936.1|gp16 Length = 763 Score = 38.9 bits (89), Expect = 0.14 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%) Frame = -1 Query: 146107 PRYEAAFKEAARDTGFDWKLLAALGYQESHWKPRATSPTGVRGLMMLTNDTAAEVGVTNR 145928 P+ +A +AA+ G +L+ AL SP G G+ + + + GVT+ Sbjct: 296 PQLDAYAAQAAQAAGVPPELMLALKNAGEKSNSGQVSPKGAAGVSQMMPENLRKYGVTDP 355 Query: 145927 LDPEQSIEGGATYLLHVK----GRLQEEITE 145847 DP Q+++G A YL + G LQ I + Sbjct: 356 TDPMQALDGMAKYLADTQKQYGGNLQAMIAD 386 >ref|NP_445687.1|putative helicase Length = 559 Score = 38.5 bits (88), Expect = 0.19 Identities = 22/72 (30%), Positives = 39/72 (54%) Frame = +1 Query: 152953 EREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 153132 ER IE K ++L+ L++ ++ G D P++ L+ +L +S Q +GR +R++ Sbjct: 461 ERMEKIEALKNEKLQVLISTSLADEGLDIPNLRLVVLLTQGKSRIKLIQRIGRVMRVSQN 520 Query: 153133 KQDCLILDYAGN 153168 K+ ILD N Sbjct: 521 KRKGYILDVIYN 532 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 764,867,528 Number of Sequences: 14420 Number of extensions: 15984297 Number of successful extensions: 57842 Number of sequences better than 0.5: 45 Number of HSP's better than 0.5 without gapping: 11113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 57698 length of database: 3,019,461 effective HSP length: 124 effective length of database: 1,231,381 effective search space used: 66154712844 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig68 (159,246 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818503.1|gp203 333 2e-90 ref|NP_932362.1|topoisomerase II large subunit 141 2e-32 ref|NP_943883.1|topoisomerase II large subunit 129 8e-29 ref|NP_861694.1|gp60plus39 large subunit topoisomerase II 126 5e-28 ref|NP_899293.1|topoisomerase II large subunit 126 5e-28 ref|NP_891577.1|topoisomerase II large subunit 118 2e-25 ref|NP_861955.1|gp52 topoisomerase II, medium subunit 112 8e-24 ref|NP_049875.1|gp52 topoisomerase II, medium subunit 109 7e-23 ref|NP_049621.1|gp39 topoisomerase II, large subunit, N-terminal... 98 2e-19 ref|NP_944225.1|gp52 topoisomerase II medium subunit 95 2e-18 ref|NP_891840.1|topoisomerase medium subunit 94 5e-18 ref|NP_076827.1|Csp 90 7e-17 ref|NP_932596.1|topoisomerase II medium subunit 89 1e-16 ref|NP_899529.1|topoisomerase II small subunit 86 1e-15 ref|NP_932439.1|hypothetical protein 69 1e-10 ref|NP_852553.1|hypothetical protein 64 3e-09 ref|NP_046584.1|putative transglycosylase 58 2e-07 ref|NP_945089.1|gp58 57 4e-07 ref|NP_046573.1|putative thioredoxin 49 2e-04 ref|NP_040700.1|hypothetical protein 48 3e-04 ref|YP_024695.1|gp22 45 0.002 ref|NP_046716.1|thioredoxin 45 0.003 ref|NP_046877.1|putative non-heme haloperoxidase 44 0.006 ref|NP_817815.1|gp54 43 0.008 ref|NP_891714.1|hypothetical protein 43 0.010 ref|NP_047971.2|gp26 43 0.010 ref|NP_861914.1|Cd dCMP deaminase 42 0.017 ref|NP_049618.1|gp60 topoisomerase II, large subunit, C-terminal... 41 0.029 ref|NP_052116.1|internal virion protein D 41 0.029 ref|NP_046572.1|ABC transporter 41 0.037 ref|NP_958267.1|hypothetical protein 40 0.064 ref|NP_899367.1|dCMP deaminase 40 0.064 ref|NP_817947.1|gp96 39 0.11 ref|NP_795475.1|hypothetical protein 39 0.14 ref|NP_049828.1|Cd dCMP deaminase 39 0.14 ref|NP_859265.1|hypothetical protein 38 0.24 ref|NP_612899.1|hypothetical protein 38 0.24 ref|NP_859099.1|hypothetical protein 38 0.24 ref|NP_050557.1|hypothetical protein 38 0.24 ref|NP_049519.1|putative tail fiber protein 38 0.24 ref|YP_164061.1|endolysin 38 0.32 ref|YP_024716.1|gp43 37 0.41 >ref|NP_818503.1|gp203 Length = 442 Score = 333 bits (855), Expect = 2e-90 Identities = 181/373 (48%), Positives = 241/373 (64%), Gaps = 1/373 (0%) Frame = +3 Query: 140172 DMAELLETRLREYGVKAEVVDTWPGPVITRFEIKPAAGVKVSKISNLSKDLARSLMVKSV 140351 D++ + + LRE+ ++A+V GP +TR+EI GV++ K++ L LA +L +SV Sbjct: 8 DISAQIISALREFDIEAKVTGRTDGPSVTRYEITLGPGVRIQKVAQLQSQLAYALATESV 67 Query: 140352 RVVEIIPGRPTVGIEIPNPNRAMIRLREVLDSDVYQQAESPLTMGLGQDIGGNPVVANLN 140531 RVV IPG+ VGIE+P P R +RL+ ++ D + PLT+ +G+D+ G + NL Sbjct: 68 RVVAPIPGKTAVGIELPRPERQTVRLQHIVPED-----DHPLTVAVGKDVEGKDISLNLA 122 Query: 140532 KMPHLLVAGTTGSGKSVGVNAMLISMLLKATPDEVRMIMVDPKMLELSVYDGIPHLLAPV 140711 KMPHLLVAG TGSGKS +N+ML+S+L +ATPD V++IM+DPK +EL+ Y+GIPHLL PV Sbjct: 123 KMPHLLVAGATGSGKSSFINSMLVSLLYRATPDRVKLIMIDPKCVELTPYNGIPHLLQPV 182 Query: 140712 VTDMKEAANALRWCVAEMERRYKLMAAMGVRNLAGFNAKLDEAERHGAQVADPLWEPQPW 140891 VT+ EA LRW EM+ RY+ M GVR+ AE+ G Sbjct: 183 VTEADEAVKTLRWLTVEMDDRYRQMQEAGVRH----------AEKLG------------- 219 Query: 140892 EMHEQPPVLEKLPYIVVVIDEFADMFMIVGKK-VEELIARLAQKARAAGIHLILATQRPS 141068 LPYIVVV+DE AD+ M KK VE I R+AQKARAAGIHL+LATQRPS Sbjct: 220 -----------LPYIVVVVDELADLMMGGYKKEVEANIVRIAQKARAAGIHLVLATQRPS 268 Query: 141069 VDVVTGLIKANIPTRMAFQVSSKVDSRTILDQGGAENLLGHGDMLYLPAGAGMPTRVHGA 141248 VDVVTGLIK+N+P+R++F +S DSR ILD+GGAE L+G GD L+LP GA R+ GA Sbjct: 269 VDVVTGLIKSNVPSRLSFATASLTDSRVILDEGGAEQLMGMGDGLFLPVGARSAIRIQGA 328 Query: 141249 FVDDDEVHRIVED 141287 FV D E+ V + Sbjct: 329 FVSDGEIEAAVNN 341 >ref|NP_932362.1|topoisomerase II large subunit Length = 607 Score = 141 bits (355), Expect = 2e-32 Identities = 165/603 (27%), Positives = 265/603 (43%), Gaps = 21/603 (3%) Frame = +3 Query: 24660 LAQEVIDNSVDEALAGH---ASHIRVRLHD-DGGIEVSDDGRGMPIDM--HPEHGVSGVE 24821 + E+IDNSVDE + A+ I +R +G + V D+GRG+P M P+ + Sbjct: 50 IIDEIIDNSVDEGIRTDFKFANKIDIRFDLLEGSVTVVDNGRGIPQSMVETPDGEMPKPV 109 Query: 24822 LILTRLHAGGKFSQSSYRFXXXXXXXXXXXXNALSRRLEIEVCRDGDRHGMAFAHGDKVE 25001 T+ AG F ++ R N S++ E C + + + G Sbjct: 110 AAWTQTMAGSNFDDTN-RVSMGMNGVGSSLTNFFSKKFIGETCDGKNFLTVTCSEGASNI 168 Query: 25002 DLTVIGTCSKKAKGTVVRFWPDESYFDSPRL---ALPRLKHLLRAKAVLCPGLEVTLIEA 25172 D T K KGT V F PDE +F+ + + + + A +V+ P ++ T+ Sbjct: 169 DWE---TKPGKIKGTSVYFIPDEKHFEGRTIDQQIIDIISDRITALSVVFPQIKFTI--- 222 Query: 25173 DGTESVWQYADGLRDYLAQATDDVETLPASPFLGHFEDEDQGVDWAIQWLPEGGELLQES 25352 +G + ++AD Y D+ + + F AI PEG Q S Sbjct: 223 NGQIASMKFAD----YAKMFGDESLIVESDRF-----------SIAICNSPEG--FRQVS 265 Query: 25353 YVNLIPTPLGGTHVNGLRSGLLDALREFCEYRSLLPRGVKLTGDDLWERVSFVLSVK-LL 25529 YVN + GG+H++ L G+ + L + + ++++ + E ++ V+ V+ + Sbjct: 266 YVNGLNIKNGGSHIDYLVDGISEELMPAIKKK----HKIEISKARVKECLTMVVVVRGMS 321 Query: 25530 DPQFAGQTKERLSSRVVAGFVSGVVKDAFSL---WLNHHVDQAEALAELVINAAQRRQKS 25700 + +F QTKERL++ +G VK F L L+ + +A+ + +I AA R + Sbjct: 322 NLRFDSQTKERLTNP------AGEVKSHFDLDFKKLSKQIMNTDAILQPIIEAALARHLA 375 Query: 25701 AKKVARKKVTSGPALPGKLADCS----GQDPAASELFLVEGDSAGGSAKQARDRETQAIL 25868 A+K A K A G++ + LFL EG+SA G + +D Sbjct: 376 AEKAAMTKAQKAAAKTNCAKHIKAGEWGRNDIETTLFLTEGESAIGYLLKVKDENLHGGY 435 Query: 25869 PLRGKILNTWEVEAHDIYGSQEVHDIAVAIGMD-PGSDDLSKLRYHKICILADADSDGL- 26042 LRGK++NTW ++ D+ + E+ DI G+D DD+S+ +Y I I+ DAD DG Sbjct: 436 ALRGKVMNTWGMKGSDVLKNNELSDICAITGLDLANPDDISQRKYKNIAIMTDADPDGQG 495 Query: 26043 HIATLLCALFVRHFPALVDAGHVFVAMPPLYRIDLGKEV--HYALDESEKTAILKRLEGK 26216 I L A F R +P L D G V P+ ++ GK Y L E EK K +G Sbjct: 496 SIYPCLLAFFAR-WPKLFDEGSVRFVKTPVVILNKGKNTKWFYTLTEFEKEK--KDYKGW 552 Query: 26217 RGTPNVQRFKGLGEMSPLQLRETTMAADTRRLVQLTLTVGDGTREMMDMLLAKKRAGDRK 26396 +++ KGLG LRE + + +GD E+ +MLL A RK Sbjct: 553 ----DLRYIKGLG-----SLREHEYSDVVNNPNYDIVDLGDDWEELFEMLLGDD-AALRK 602 Query: 26397 NWL 26405 W+ Sbjct: 603 EWM 605 >ref|NP_943883.1|topoisomerase II large subunit Length = 613 Score = 129 bits (324), Expect = 8e-29 Identities = 161/599 (26%), Positives = 255/599 (42%), Gaps = 17/599 (2%) Frame = +3 Query: 24660 LAQEVIDNSVDEALAG---HASHIRVRLHDDGGIEVSDDGRGMPIDM--HPEHGVSGVEL 24824 + EVIDNSVDEA+ HA+ I V + D+ + V D+GRG+P M PE GVE+ Sbjct: 50 ITDEVIDNSVDEAIRTNFEHANQIEVVIKDNQ-VSVKDNGRGLPQGMVVTPE----GVEV 104 Query: 24825 IL-----TRLHAGGKFSQSSYRFXXXXXXXXXXXXNALSRRLEIEVCRDGDRHGMAFAHG 24989 L TR AG FS R N S V G+ Sbjct: 105 PLPLAAWTRARAGSNFSAD--RKTIGKNGVGSALTNFFSDSF---VGETGNGTNTVTVRC 159 Query: 24990 DKVEDLTVIGTCSKKAKGTVVRFWPDESYFDSPRLALPRLKHLLRAKAVLCPGLEVTLIE 25169 D T + K KGT V F PD + F +L + + L + Sbjct: 160 TNNADEVSYTTKAGKFKGTNVTFVPDFTRFGVFQLDEDFEQVIQSRLLTLAVNFPPITFK 219 Query: 25170 ADGTESVWQYADGLRDYLAQATDDVETLPASPFLGHFEDEDQGVDWAIQWLPEGGELLQE 25349 +G + +++ + AQ D V D++ + +A E Q Sbjct: 220 YNGKKVEGKFSK----FAAQFGDVVS----------HNDDNVSLFFATS-----EEYRQL 260 Query: 25350 SYVNLIPTPLGGTHVNGLRSGLLDALREFCEYRSLLPRGVKLTGDDLWERVSFVLSVK-L 25526 S+VN + T GG HV G+ L D L + + +++ + E + L ++ L Sbjct: 261 SFVNGVHTKQGGNHVYGVLDSLSDELIPMIKRQ----HKIEINKARIKECLLIGLFIRNL 316 Query: 25527 LDPQFAGQTKERLSSRVVAGFVSGVVKDAFSL---WLNHHVDQAEALAELVINAAQRRQK 25697 + P++ GQTKERLSS ++D +L L + + + + +I +A +++ Sbjct: 317 VAPKYDGQTKERLSSPWAQ------IRDHMNLDYKALARKILKTPEVIDPIIASALAKKE 370 Query: 25698 SAKKVARKKVT--SGPALPGKLADCSGQDPAASELFLVEGDSAGGSAKQARDRETQAILP 25871 +A K A K + A K +G + LFL EGDSA G + R+ ETQ P Sbjct: 371 AADKAAATKAQKKAKKANVAKHVAAAGLGRLKTMLFLAEGDSAIGPFTRFRNEETQGSYP 430 Query: 25872 LRGKILNTWEVEAHDIYGSQEVHDIAVAIGMDPGSDDLSKLRYHKICILADADSDGL-HI 26048 LRGK+LN W + H++ ++E+ D+ + ++ S + Y I I+ DAD DG I Sbjct: 431 LRGKMLNVWNLPDHEVLKNKEIADLLGILNVELRSKEAP--AYTDIAIMTDADQDGKGSI 488 Query: 26049 ATLLCALFVRHFPALVDAGHVFVAMPPLYRIDLGKEVHYALDESEKTAILKRLEGKRGTP 26228 A L A F + +P + G + + P Y GK+ ++ E + K+ +GK Sbjct: 489 AMLAIAFFYKFWPHWFEQGRIHIVRTPEYISTNGKKTDWSYSRDEFRS--KKFDGKW--- 543 Query: 26229 NVQRFKGLGEMSPLQLRETTMAADTRRLVQLTLTVGDGTREMMDMLLAKKRAGDRKNWL 26405 + KGLG ++ ++ + LV + + D T E+++ML RK WL Sbjct: 544 THRHIKGLGSLT-VEGDDCEYKQCIENLVLEQVVIDDQTPELLEMLFGDDE-HKRKQWL 600 >ref|NP_861694.1|gp60plus39 large subunit topoisomerase II Length = 606 Score = 126 bits (317), Expect = 5e-28 Identities = 165/612 (26%), Positives = 266/612 (43%), Gaps = 30/612 (4%) Frame = +3 Query: 24660 LAQEVIDNSVDEALAGH---ASHIRVRLHDDGGIEVSDDGRGMPIDMHPEHG---VSGVE 24821 L E+IDNSVDEA+ A+ I V++ ++ + V D+GRG+P + + + G Sbjct: 52 LIDEIIDNSVDEAIRTSFKFANKIDVQIKNNQ-VSVEDNGRGIPQGLVTDQTGEQIPGPV 110 Query: 24822 LILTRLHAGGKFSQSSYRFXXXXXXXXXXXXNALSRRLEIEVCRDGDRHGMAFAHGDKVE 25001 T AGG F S R N S L + DG+ + + +E Sbjct: 111 AAWTIPKAGGNFGDDSERKTGGMNGVGSSLTNIFST-LFTGITSDGENE-ITVNCSNGME 168 Query: 25002 DLTVIGTCSKKAKGTVVRFWPDESYFDSPRLA---LPRLKHLLRAKAVLCPGLEVTLI-- 25166 + + SK KGT V F PD + F+ L+ L L+ AV+ P ++ T Sbjct: 169 NKSWSSKKSK-GKGTKVIFTPDFTSFEEHNLSQIYLDITLDRLQTLAVVYPDIKFTFNGK 227 Query: 25167 EADGTESVWQYADGLRDYLAQATDDVETLPASPFLGHFEDEDQGVDWAIQWLPEGGELLQ 25346 + DG + + Q +D + E+ V A P+G L Sbjct: 228 KVDGN---------FKRFAKQFGED-----------NIIQENDKVSIAFTTSPDGFRHL- 266 Query: 25347 ESYVNLIPTPLGGTHVNGLRSGLLDALREFCEYRSLLP------RGVKLTGDDLWERVSF 25508 +YVN I T GG HV + + + CE+ LLP +G+++T + E ++ Sbjct: 267 -TYVNNIHTKNGGHHVECV-------MDDICEH--LLPGIKKKYKGIEVTKARVKECLTM 316 Query: 25509 VLSVK-LLDPQFAGQTKERLSSRVVAGFVSGVVKDAFSLWLNHHVDQA----EALAELVI 25673 ++ ++ + + +F QTKERL+S G +++ L + QA EAL ++ Sbjct: 317 LMFIRDMSNMRFDSQTKERLTSTY------GDIRNHIQLDAKK-IAQALLKNEALIMPIV 369 Query: 25674 NAAQRRQKSAKKVAR----KKVTSGPALPGKLADCSGQDPAASELFLVEGDSAGGSAKQA 25841 AA R+ +A+K A KK T A+ G+D A + LFL EGDSA G Sbjct: 370 EAALARKLAAEKAAETKAAKKATKAKVHKHIKANQCGKD-ADTTLFLTEGDSAIGYLIDV 428 Query: 25842 RDRETQAILPLRGKILNTWEVEAHDIYGSQEVHDIAVAIGMDPGSDDLSKLRYHKICILA 26021 RDRE PLRGK++N+W + D+ ++E+ DI G+ G + Y I I+ Sbjct: 429 RDRELHGGFPLRGKVMNSWGMSYADMMKNKELFDICAITGLILG-EKAENTNYRNIAIMT 487 Query: 26022 DADSDGLHIATLLCALFVRHFPALVDAGHVFVAMPPLYRIDLGK--EVHYALDESEKTAI 26195 DAD DGL F ++P L + G + P+ +GK + Y + E E Sbjct: 488 DADHDGLGSIYPALLAFFSNWPELFEQGRIRFVKTPVIIAQIGKTQKWFYTVAEYE---- 543 Query: 26196 LKRLEGKRGTP--NVQRFKGLGEMSPLQLRETTMAADTRRLVQLTLTVGDGTREMMDMLL 26369 E K P +++ KGLG + + R+ + V + + + +E+ +ML+ Sbjct: 544 ----EAKDTLPKHSIRYIKGLGSLEKSEYRKM-----IQNPVYDVVKLPENWKELFEMLM 594 Query: 26370 AKKRAGDRKNWL 26405 + RK W+ Sbjct: 595 GDD-SELRKEWM 605 >ref|NP_899293.1|topoisomerase II large subunit Length = 597 Score = 126 bits (317), Expect = 5e-28 Identities = 156/598 (26%), Positives = 257/598 (42%), Gaps = 31/598 (5%) Frame = +3 Query: 24582 SIEVLSGLDPVRKRPGMYTDT-SRPNH-------------------LAQEVIDNSVDEAL 24701 + ++LS V KRPGMY + R H + EVIDNS+DEA+ Sbjct: 6 NFQILSDKQHVLKRPGMYIGSVDREAHERFVLGEYKQIEYVPGLVKIINEVIDNSLDEAI 65 Query: 24702 AGH---ASHIRVRLHDDGGIEVSDDGRGMPID-MHPEHG--VSGVELILTRLHAGGKFSQ 24863 A+ I V++ + I ++D+GRG+P D + HG + E TR AG F Sbjct: 66 RTKFKFANVIEVKV-EGNRITIADNGRGIPQDKVIDPHGNELLRPEAAWTRTKAGSNFED 124 Query: 24864 SSYRFXXXXXXXXXXXXNALSRRLEIEVCRDGDRHGMAFAHGDKVEDLTVIGTCSKKAKG 25043 R N S + + C DG ++ + + + E + V T +G Sbjct: 125 D--RTTVGMNGVGAALTNYFSHQFIGKTC-DG-KNTVTVSCSNNAERIFV-RTSKGGTQG 179 Query: 25044 TVVRFWPDESYFDSPRLALPRLKHLLRAKAVLCPGLEVTLIEADGTESVWQYADGLRDYL 25223 T V F PD + F ++ P+ + +++ + L V E + ++A L+ Y Sbjct: 180 TSVEFIPDFNRFGVFGIS-PQDEEIIKDRLA---ALSVAFPEITFKYNGKKHAPTLKQYA 235 Query: 25224 AQATDDVETLPASPFLGHFEDEDQGVDWAIQWLPEGGELLQESYVNLIPTPLGGTHVNGL 25403 DV FE ++ + ++ E S++N + T GGTHV+ Sbjct: 236 KMFGTDVS----------FEFDNVAL-----FIAASDEFRHNSFINGVHTINGGTHVDYF 280 Query: 25404 RSGLLDALREFCEYRSLLPRGVKLTGDDLWERVSFVLSVK-LLDPQFAGQTKERLSSRVV 25580 + L D L + + + + L ++ L ++ +DP+F QTKERL+S Sbjct: 281 SNKLADELIPMIKRK----HKINVPKPQLKNGLTIGLFIRNFVDPKFDSQTKERLTSS-- 334 Query: 25581 AGFVSGVVKDAFSLWLNHHVDQAEALAELVINA--AQRRQKSAKKVARKKVTSGPALPGK 25754 G VS +KD + + + + +I A A++ A+++ARK+ + A K Sbjct: 335 QGDVSPYLKDISYDKIAKKILADDDIIMPIIEALLAKQHAAEARELARKQKKAQNA---K 391 Query: 25755 LADCSGQDPAASELFLVEGDSAGGSAKQARDRETQAILPLRGKILNTWEVEAHDIYGSQE 25934 + D LFL EG SA G + RD + +PLRGK+L+TW I ++E Sbjct: 392 VVDHIKATMPGGTLFLTEGKSAIGYLIKVRDSKKHGGIPLRGKVLSTWGKRPAKIMENKE 451 Query: 25935 VHDIAVAIGMDPGSDDLSKLRYHKICILADADSDGLHIATLLCALFVRHFPALVDAGHVF 26114 + DI + + G+DD+ + YH I IL DAD DG L F ++P L + Sbjct: 452 LCDIMSVLNIQLGNDDIRDMYYHDIGILVDADVDGKGSIFPLLLAFFYNWPELYKQKRIK 511 Query: 26115 VAMPPLYRIDLGKEV--HYALDESEKTAILKRLEGKRGTPNVQRFKGLGEMSPLQLRE 26282 P+ KE Y++DE K + K T ++ KGLG ++ + ++ Sbjct: 512 FVRTPVVIATNKKETKWFYSIDEYRKAKLSK-------TWKIRYIKGLGSLTEKEYKK 562 >ref|NP_891577.1|topoisomerase II large subunit Length = 607 Score = 118 bits (295), Expect = 2e-25 Identities = 172/654 (26%), Positives = 274/654 (41%), Gaps = 44/654 (6%) Frame = +3 Query: 24579 SSIEVLSGLDPVRKRPGMYT-DTSRPNH-------------------LAQEVIDNSVDEA 24698 S +LS + V KR GMY T+ H + E+IDNSVDEA Sbjct: 2 SEFRILSDREHVLKRAGMYIGSTTYEEHQRFLFGKWTKISYVPGLVKIIDEIIDNSVDEA 61 Query: 24699 LAGHASHIRVRLHD--DGGIEVSDDGRGMPIDMHPEHGVSGVEL-----ILTRLHAGGKF 24857 + + V D + + V+D+GRG+P H G ++ TR AG F Sbjct: 62 IRTNFEFANVISVDIQNNIVTVTDNGRGIP--QHMVTTPEGTQIPQPVAAWTRTKAGSNF 119 Query: 24858 SQSSYRFXXXXXXXXXXXXNALSRRLEIEVCRDGDRHGMAFAHGDKVEDLTVIGTCSKKA 25037 ++ R N S C DG+ M + E++T SK Sbjct: 120 DDTN-RLTQGMNGVGSSLSNFFSDWFTGVTC-DGETE-MTVQCTNGAENITWSSKPSK-L 175 Query: 25038 KGTVVRFWPDESYFDSPRL---ALPRLKHLLRAKAVLCPGLEVTLIEADGTESVWQYADG 25208 KGT V F PD +F+ + L + L++ +V+ P + + +G V ++ Sbjct: 176 KGTNVTFCPDFDHFEGYMMDNSVLDIVHDRLQSLSVIFPKIT---FKFNGKRIVSKF--- 229 Query: 25209 LRDYLAQATDDVETLPASPFLGHFEDEDQGVDWAIQWLPEGGELLQESYVNLIPTPLGGT 25388 +DY DD PF+ ED+ A+ EG S+ N + T GGT Sbjct: 230 -KDYAKLYNDD-------PFV----IEDKNFSLALVPAVEGEGFKSVSFANGLFTKNGGT 277 Query: 25389 HVNGLRSGLLDAL--REFCEYRSLLPRGVKLTGDDLWERVSFVLSVKLL-DPQFAGQTKE 25559 HV+ + L + + R EY+ + + +G ++ +L V+ L + +F QTKE Sbjct: 278 HVDYVTDDLCEEIVKRIKKEYKVDVTKAAVKSG------LTCILIVRELPNLRFDSQTKE 331 Query: 25560 RLSSRVVAGFVSGVVKDAFSL---WLNHHVDQAEALAELVINAAQRRQKSAKKVARKKVT 25730 RL++ +G +K L L + + E + +I R+++A K A K Sbjct: 332 RLTNP------TGDIKRHIDLDFKKLAKVIAKKENIIMPIIAVVLARKEAADKAAATKAA 385 Query: 25731 SGPALPGKLA-----DCSGQDPAASELFLVEGDSAGGSAKQARDRETQAILPLRGKILNT 25895 A K+A + G D A + LFL EGDSA RD++ PLRGK L T Sbjct: 386 KA-AKRAKVAKHVKANLIGTD-AETTLFLTEGDSAINYLISVRDQDLHGGFPLRGKTLTT 443 Query: 25896 WEVEAHDIYGSQEVHDIAVAIGMDPGSDDLSKLRYHKICILADADSDGL-HIATLLCALF 26072 WE I + E+ +I G+ G D L ++Y I I+ DAD+DG+ I L + F Sbjct: 444 WEQPEAKIVKNAEIFNIMAITGLQFGVDALDVMQYKNIAIMTDADTDGIGSIKPSLISFF 503 Query: 26073 VRHFPALVDAGHVFVAMPPLYRID--LGKEVHYALDESEKTAILKRLEGKRGTPNVQRFK 26246 R +P L + G + P+ + G +V + D + ++G N++ K Sbjct: 504 AR-WPELFEDGRIRFIKTPIIIAEPKKGDDVRWYYDLEDFENDRDNIKGY----NIRYIK 558 Query: 26247 GLGEMSPLQLRETTMAADTRRLVQLTLTVGDGTREMMDMLLAKKRAGDRKNWLE 26408 GL L E+ V +T+ + +E+ D+L ++ A RK W++ Sbjct: 559 GLA-----SLTESDYHRVINDPVMEIITLPENYKELFDLLYSED-ADQRKIWMQ 606 >ref|NP_861955.1|gp52 topoisomerase II, medium subunit Length = 441 Score = 112 bits (281), Expect = 8e-24 Identities = 86/274 (31%), Positives = 134/274 (48%), Gaps = 3/274 (1%) Frame = +2 Query: 26663 SLKEYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELSLTASAKYKKSARTVG 26842 +LK + L Y+MY + +RA+P++ DG KPVQR +V+ +L+ K+ K A G Sbjct: 7 NLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVHRALDLARGNKEKFHKLASIAG 66 Query: 26843 DVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSPDDPKSFAAMRYTEARLSK- 27019 V + HG+S+ +A LMA +++ YPL+DGQGN+GS K+ AA RY AR+SK Sbjct: 67 GVADLGYHHGESSAQDAGALMANTWNNNYPLLDGQGNFGSRTVQKA-AASRYIFARVSKN 125 Query: 27020 FSEVLLSELGQGTVDWTPNFDGTLDEPA--VLPARLPHVLLNGATGIAVGMATDIPPHNV 27193 F V ++ P + P LP +P VLLNG +GIA G AT+I PH+ Sbjct: 126 FYNVYKD------TEYAPAHEDKEHIPPKFYLPI-IPTVLLNGVSGIATGYATNILPHSF 178 Query: 27194 REVVDATCHLLRHPQATVSDLMAYVPAPDFPTEAEIISPSSDLAKLYESGRGSVKLRGRY 27373 + V A L+ T V P+F E + ++ G+ K R Sbjct: 179 KSVKKAVLQALQGKNVT----KPKVEFPEFRGEVHEVDGRYEI-------HGTYKFTSRT 227 Query: 27374 TLEEGNVVVTALPYQVSGAKVLEQIAAQMQAKKL 27475 ++ +T +PY+ + ++ ++ K L Sbjct: 228 QMQ-----ITEIPYKFDRETYVSKVLDPLEDKGL 256 >ref|NP_049875.1|gp52 topoisomerase II, medium subunit Length = 442 Score = 109 bits (273), Expect = 7e-23 Identities = 84/268 (31%), Positives = 129/268 (48%) Frame = +2 Query: 26666 LKEYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELSLTASAKYKKSARTVGD 26845 LK + L Y+MY + +RA+P++ DG KPVQR ++ +L+ K+ K A G Sbjct: 8 LKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGG 67 Query: 26846 VLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSPDDPKSFAAMRYTEARLSKFS 27025 V + HG+++ +A LMA +++ +PL+DGQGN+GS K+ AA RY AR+SK Sbjct: 68 VADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKA-AASRYIFARVSKNF 126 Query: 27026 EVLLSELGQGTVDWTPNFDGTLDEPAVLPARLPHVLLNGATGIAVGMATDIPPHNVREVV 27205 + + V + D PA +P VLLNG +GIA G AT I PH+V V Sbjct: 127 YNVYKDTEYAPV----HQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSVK 182 Query: 27206 DATCHLLRHPQATVSDLMAYVPAPDFPTEAEIISPSSDLAKLYESGRGSVKLRGRYTLEE 27385 A L+ + T V P+F E I ++ RG+ K R + Sbjct: 183 KAVLQALQGKKVT----KPKVEFPEFRGEVVEIDGQYEI-------RGTYKFTSRTQMH- 230 Query: 27386 GNVVVTALPYQVSGAKVLEQIAAQMQAK 27469 +T +PY+ + +I ++ K Sbjct: 231 ----ITEIPYKYDRETYVSKILDPLENK 254 >ref|NP_049621.1|gp39 topoisomerase II, large subunit, N-terminal region Length = 516 Score = 98.2 bits (243), Expect = 2e-19 Identities = 131/501 (26%), Positives = 204/501 (40%), Gaps = 39/501 (7%) Frame = +3 Query: 24579 SSIEVLSGLDPVRKRPGMYTDTSRPN--------------------HLAQEVIDNSVDEA 24698 + I++LS ++ ++KR GMY +S L E+IDNSVDE Sbjct: 4 NEIKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDEG 63 Query: 24699 LAGH---ASHIRVRLHDDGGIEVSDDGRGMP---IDMHPEHGVSGVELILTRLHAGGKFS 24860 + A+ I V + ++ + V D+GRG+P + + G T AGG F Sbjct: 64 IRTKFKFANKINVTIKNNQ-VTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFG 122 Query: 24861 QSSYRFXXXXXXXXXXXXNALSRRLEIEVCRDGDRHGMAFAHGDKVEDLTVIGTCSKKAK 25040 R N S V GD + K K Sbjct: 123 DDKERVTGGMNGVGSSLTNIFSVMF---VGETGDGQNNIVVRCSNGMENKSWEDIPGKWK 179 Query: 25041 GTVVRFWPDESYFDSPRLALPRLK---HLLRAKAVLCPGLEVTLIEADGTESVWQYADGL 25211 GT V F PD F++ L+ L L+ AV+ P ++ T +G + + Sbjct: 180 GTRVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTF---NGKKVQGNFKKYA 236 Query: 25212 RDYLAQATDDVETLPASPFLGHFEDEDQGVDWAIQWLPEGGELLQESYVNLIPTPLGGTH 25391 R Y A E + A+ P+G Q +YVN I T GG H Sbjct: 237 RQYDEHA---------------IVQEQENCSIAVGRSPDG--FRQLTYVNNIHTKNGGHH 279 Query: 25392 VNGLRSGLLDALREFCEYRSLLPR-----GVKLTGDDLWERVSFVLSVK-LLDPQFAGQT 25553 ++ A+ + CE L+P+ + +T + E ++ V+ V+ + + + QT Sbjct: 280 IDC-------AMDDICE--DLIPQIKRKFKIDVTKARVKECLTIVMFVRDMKNMRLIRQT 330 Query: 25554 KERLSSRVVAGFVSGVVKDAFSLWLNHHVDQAEALAELVINAAQRRQKSAKKVAR----K 25721 KERL+S S + DA + + + EA+ +I AA R+ +A+K A K Sbjct: 331 KERLTSPF-GEIRSHIQLDAKKI--SRDILNNEAILMPIIEAALARKLAAEKAAETKAAK 387 Query: 25722 KVTSGPALPGKLADCSGQDPAASELFLVEGDSAGGSAKQARDRETQAILPLRGKILNTWE 25901 K + A+ G+D A + LFL EGDSA G RD+E PLRGK+LN+W Sbjct: 388 KASKAKVHKHIKANLCGKD-ADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNSWG 446 Query: 25902 VEAHDIYGSQEVHDIAVAIGM 25964 + D+ ++E+ DI G+ Sbjct: 447 MSYADMLKNKELFDICAITGL 467 >ref|NP_944225.1|gp52 topoisomerase II medium subunit Length = 438 Score = 95.1 bits (235), Expect = 2e-18 Identities = 61/180 (33%), Positives = 100/180 (55%), Gaps = 2/180 (1%) Frame = +2 Query: 26696 DYSMYVILDRALPHIGDGMKPVQRRIVYAMRELSLTASAKYKKSARTVGDVLGKFHPHGD 26875 +++MY I +RALP + DG+KPVQR I++++ + A ++KK+A G + + HG+ Sbjct: 18 EFAMYTIEERALPSMVDGLKPVQRYILFSVLK---NAGREFKKNAAVAGVISEYGYNHGE 74 Query: 26876 SACYEAMVLMAQSFSYRYPLIDGQGNWGSPDDPKSFAAMRYTEARLSKFSEVL--LSELG 27049 A +A LMA +++ +P+I G+GN+G + AA ++ +F + + L Sbjct: 75 MAAMDAACLMASTWNNNFPVIQGRGNFGCRAVQEGAAARYIFCSKHERFESMFKDMELLE 134 Query: 27050 QGTVDWTPNFDGTLDEPAVLPARLPHVLLNGATGIAVGMATDIPPHNVREVVDATCHLLR 27229 + T DG++ LP LP VLLNG +GIA G AT I PH+V+ V +L+ Sbjct: 135 ESTA------DGSILPRYYLPI-LPTVLLNGVSGIATGFATKIMPHSVQSVAKCVEQVLK 187 >ref|NP_891840.1|topoisomerase medium subunit Length = 454 Score = 93.6 bits (231), Expect = 5e-18 Identities = 94/377 (24%), Positives = 160/377 (42%), Gaps = 2/377 (0%) Frame = +2 Query: 26663 SLKEYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELSLTASAKYKKSARTVG 26842 SL+ +Y++Y +R +P + DG+KPVQR ++ + S K++K A Sbjct: 15 SLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKFRKMADIGS 74 Query: 26843 DVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSPDDPKSFAAMRYTEARLSKF 27022 V + HG++ EA LMA ++S PL+DGQGN+GS K+ AA RY AR+ + Sbjct: 75 GVAELGYHHGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAA-RYIFARVHEN 133 Query: 27023 SEVLLSELGQGTVDWTPNFDGTLDEPAVLPARLPHVLLNGATGIAVGMATDIPPHNVREV 27202 + ++ + D PA +P VL NG +GIA G TDI PH++ + Sbjct: 134 FFKIYKDMNCA----PKHEDLEHIPPAFYLPVVPMVLANGISGIATGYKTDILPHSLESL 189 Query: 27203 VDATCHLLRHPQATVSDLMAYVPAPDFPTEAEIISPSSDLAKLYESGRGSVKLRGRYTLE 27382 ++ T + ++ + P+ FP + P D R V L G Y L Sbjct: 190 IECT-------ELALAGKLDKEPSVQFPKFTGKVIPRDD--------RDGVILEGTYELN 234 Query: 27383 -EGNVVVTALPYQVSGAKVLEQIAAQMQAKKLPMVADLRDESTHETPTRLVIVPRSNRVD 27559 + + ++ +PY+ E +A ++ ++ D + + V + R Sbjct: 235 GKTKLTISEVPYKFDRE---EYVAVLDALEEKDLIVSYNDRCSKDGFRFEVTLKRDYFKS 291 Query: 27560 VEALMAHLFATTDLEKNVRVNLNVIGLDGRPRVMALNAILDEWLXXXXXXXXXXLEHRLG 27739 + H D + V N++ ++ R V D +E RLG Sbjct: 292 EDESARHEQIMKDFKLTQLVAQNIVVVNERGLVEVFEKASD--------LIRRFVEIRLG 343 Query: 27740 KVEDRLHILEG-LLTAY 27787 V+ R+ +++ L AY Sbjct: 344 YVDKRIELMQAETLEAY 360 >ref|NP_076827.1|Csp Length = 66 Score = 89.7 bits (221), Expect = 7e-17 Identities = 42/64 (65%), Positives = 53/64 (82%) Frame = -2 Query: 68879 MATGTVKWFNDTKGYGFISPDDGGDDLFAHFSEIQAEGFKSLQDGQKVSFEVTQGKKGLQ 68700 MA GTVKWFN KG+GFI+ ++G DLFAHFS IQ++GFKSL +GQKV F+V +G++GLQ Sbjct: 1 MANGTVKWFNADKGFGFITSEEG-KDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQ 59 Query: 68699 ASNI 68688 A NI Sbjct: 60 AVNI 63 >ref|NP_932596.1|topoisomerase II medium subunit Length = 555 Score = 89.0 bits (219), Expect = 1e-16 Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 5/194 (2%) Frame = +2 Query: 26648 DVERLSLKEYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELSLTASAKYKKS 26827 ++ SL+ L+++MY + +RA+P + DG+KPVQR +Y E + +K+ K Sbjct: 109 ELHNRSLQSIINHEALEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQNRSKFNKV 168 Query: 26828 ARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSPDDPKSFAAMRYTEA 27007 A G V + HG+ + A L+A +++ P+++G GN+GS ++ AA RY Sbjct: 169 AALAGGVSEAGYHHGEGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQA-AAPRYVFC 227 Query: 27008 RLSKFSEVLLSELGQGTVDWTPNFDGTLDEPAVLPAR-----LPHVLLNGATGIAVGMAT 27172 R+ + + ++ V EP LP R +P VL NG GIA G AT Sbjct: 228 RVHQNFWDIYRDIELAPVH---------PEPEHLPPRYYLPVIPMVLANGVKGIATGYAT 278 Query: 27173 DIPPHNVREVVDAT 27214 +I PH+ + ++ T Sbjct: 279 NIFPHSYKSLIKCT 292 >ref|NP_899529.1|topoisomerase II small subunit Length = 428 Score = 85.9 bits (211), Expect = 1e-15 Identities = 89/319 (27%), Positives = 140/319 (43%), Gaps = 5/319 (1%) Frame = +2 Query: 26693 LDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELSLTASAKYKKSARTVGDVLGKFHPHG 26872 L+Y+MY I +RAL + DG+KPVQR ++Y + + AS + K A V + HG Sbjct: 14 LEYAMYTIENRALANGIDGLKPVQRFVLYNVIK---DASTSFDKVAALGSSVSKIGYNHG 70 Query: 26873 DSACYEAMVLMAQSFSYRYPLIDGQGNWGSPDDPKSFAAMRYTEARLSK-----FSEVLL 27037 +++ +A+ LMA + P++ G+GN+GS K A+ RY A+L F ++ L Sbjct: 71 ETSAQDALALMAAEWQNNVPIVQGRGNFGS-RMVKESASARYVYAKLHDNFDLYFKDIHL 129 Query: 27038 SELGQGTVDWTPNFDGTLDEPAVLPARLPHVLLNGATGIAVGMATDIPPHNVREVVDATC 27217 S + P F +P LP +L+NG GIA G A +I PH+ V A Sbjct: 130 SPEHKDLEHVPPQF--------YVPV-LPMILMNGVQGIATGFACNILPHDPEWVKKAVL 180 Query: 27218 HLLRHPQATVSDLMAYVPAPDFPTEAEIISPSSDLAKLYESGRGSVKLRGRYTLEEGNVV 27397 L + + P FP E L + G+V++ G V Sbjct: 181 EYLAGKEIS-------EPVVKFP---EFYGKIEKLEHNKYAQIGTVEISGL------TAV 224 Query: 27398 VTALPYQVSGAKVLEQIAAQMQAKKLPMVADLRDESTHETPTRLVIVPRSNRVDVEALMA 27577 VT +P AK + ++ ++ K+ D T ET V R ++ E+++ Sbjct: 225 VTEIPTGFDHAKYIIELDKLVEKGKISSYVD----ETSETFQFRVRFKRGAKMTEESVI- 279 Query: 27578 HLFATTDLEKNVRVNLNVI 27634 T L+ N+NVI Sbjct: 280 ---KTLKLQSTFTQNINVI 295 >ref|NP_932439.1|hypothetical protein Length = 80 Score = 68.9 bits (167), Expect = 1e-10 Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 1/61 (1%) Frame = +3 Query: 69300 SKVVGYLLWIF-GFTGAHRFYYGKPITGTIWFFTFGLLGIGWLIDLFLIPLMDRQADLRF 69476 S + Y+LW F GF G HRFY G TG IW FT GL GIGW IDLFL + + +++R+ Sbjct: 3 STAIAYVLWFFLGFLGIHRFYTGNIATGIIWLFTGGLFGIGWFIDLFLTAGLVQSSNVRW 62 Query: 69477 R 69479 R Sbjct: 63 R 63 >ref|NP_852553.1|hypothetical protein Length = 264 Score = 64.3 bits (155), Expect = 3e-09 Identities = 54/231 (23%), Positives = 107/231 (46%), Gaps = 11/231 (4%) Frame = +3 Query: 140523 NLNKMPHLLVAGTTGSGKSVGVNAMLISMLLKATPDEVRMIMVD--PKMLELSVYDGIPH 140696 + +K PH+++ G T GK+V + +L++ L++A P+ + ++D K LE S + G+ Sbjct: 12 DFDKTPHMVLGGLTRMGKTVFMK-VLLTTLIEANPENAHVYLIDLKEKGLEFSEFSGLKQ 70 Query: 140697 LLAPVVTDMKEAANALRWCVAEMERRYKLMAAMGVRNLAGFNAKLDEAERHGAQVADPLW 140876 ++ V +++A + L+ + ++E R K M G +N+ + E +R+ Sbjct: 71 VV-EVSDSVEKAHHVLKQIMKKIEERGKFMKENGYKNI----VETKEKDRY--------- 116 Query: 140877 EPQPWEMHEQPPVLEKLPYIVVVIDEFADMFMIVG-----KKVEE----LIARLAQKARA 141029 V++DE A + G K+ E +++ +A + Sbjct: 117 --------------------FVIVDEGAVLAPAKGLPRHINKIREECQYMLSYIATVSGG 156 Query: 141030 AGIHLILATQRPSVDVVTGLIKANIPTRMAFQVSSKVDSRTILDQGGAENL 141182 G LILATQ P+V + ++K ++ F++ + S +LD+ G E L Sbjct: 157 LGFRLILATQYPTVTSIPSVVKQMSDAKLGFRLPTYKASEVVLDESGLETL 207 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 58.2 bits (139), Expect = 2e-07 Identities = 39/137 (28%), Positives = 63/137 (45%) Frame = -3 Query: 71620 YRDAFSAWGQRNGVDPYLLMAISRRESAFNREAVSPVGARGLMQLMPGTADHVSRDLNID 71441 Y ++ + VDP L+ A+ ++ES FN +A S VGA GLMQLMP TA + Sbjct: 1422 YSSYINSAASKYNVDPALIAAVIQQESGFNAKARSGVGAMGLMQLMPATAKSLG------ 1475 Query: 71440 APTLGELFEPTTNIRLGSAYIRDMMERXXXXXXXXXXXXXXGPGRVDRWLRDSPDAFDLF 71261 + ++P N+ G+ Y+ +E+ GPG V + + Sbjct: 1476 ---VNNAYDPYQNVMGGTKYLAQQLEKFGGNVEKALAAYNAGPGNVIK-----------Y 1521 Query: 71260 VESIPFRETRAYVQAVL 71210 PF+ET+ YV+ ++ Sbjct: 1522 GGIPPFKETQNYVKKIM 1538 >ref|NP_945089.1|gp58 Length = 297 Score = 57.4 bits (137), Expect = 4e-07 Identities = 50/176 (28%), Positives = 80/176 (45%) Frame = -3 Query: 120505 QSLQAFLAVADHGSFSLAAEQLHLTQPAVSKRIAGLEGQVGAQLFDRLNRRVTLTEAGRT 120326 Q L F A A HG+F+ AAE+L++ Q AVSK++ LE +G LF R + + LT AG+ Sbjct: 10 QCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQ 69 Query: 120325 LLPRARQILVMFDDSRRALSNLSGDISGSLTMATSHHVGLHRLPPLLKAYTQAYPDVRMD 120146 R IL D + SLT+A + L + ++ +P+V Sbjct: 70 YADRVHAILA--DCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEV--S 125 Query: 120145 MRFLDSEQAYQGVLDGDLELAVVTLAPVPDPALTVVPVWIDQLRFVCGREHALAGR 119978 +R L E + + + ++ V + VP P + + + + C LAGR Sbjct: 126 VRILVREGVF-NLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTF-LAGR 179 >ref|NP_046573.1|putative thioredoxin Length = 137 Score = 48.5 bits (114), Expect = 2e-04 Identities = 27/105 (25%), Positives = 58/105 (55%), Gaps = 4/105 (3%) Frame = -2 Query: 148076 DVTSANFEQEVINAEQPVLLKFWAPWCGPCKMMAPVVDEVADEKAGGLKVVSVNVDDAP- 147900 D+ +++EV ++++P + + C PC+ + P ++EV ++ LKV ++N+++ Sbjct: 33 DINLTQYQKEV-DSKKPKFIYVYETSCPPCQEIKPELNEVIKKEK--LKVQALNIEEKEN 89 Query: 147899 ---EIAAEQGVRGVPTVMLFKSGAKVASLVGAQSKSQLTQFIDQN 147774 E + + PT++ +K G + L G +S SQ+ +F D+N Sbjct: 90 YNTEFLDKYNLNKTPTILYYKDGKEKDRLEGYRSASQIEKFFDKN 134 >ref|NP_040700.1|hypothetical protein Length = 265 Score = 47.8 bits (112), Expect = 3e-04 Identities = 28/85 (32%), Positives = 44/85 (51%) Frame = -3 Query: 71614 DAFSAWGQRNGVDPYLLMAISRRESAFNREAVSPVGARGLMQLMPGTADHVSRDLNIDAP 71435 + A + +DP L+ + + ES+ N S VGA GLMQLMP TA + Sbjct: 9 ETIGAASAQYNLDPRLVAGVVQTESSGNPRTTSGVGAMGLMQLMPATAKSLG-------- 60 Query: 71434 TLGELFEPTTNIRLGSAYIRDMMER 71360 + ++PT NI G+A +R+ ++R Sbjct: 61 -VTNAYDPTQNIYGGAALLRENLDR 84 >ref|YP_024695.1|gp22 Length = 203 Score = 45.1 bits (105), Expect = 0.002 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Frame = -3 Query: 71650 DALAWRFPPAYRDAFSAWGQRNGVDPYLLMAISRRESAFNREAVSPVGARGLMQLMPGTA 71471 +ALA+R R+A + WG V + A +ES + +AVS VGARG+ Q MP T Sbjct: 25 EALAYR-AELTRNARAVWGMDAPVSSFA--AQIHQESRWRADAVSVVGARGMSQFMPSTV 81 Query: 71470 DHVSRDLNIDAPTLGEL--FEPTTNIRLGSAYIRDMMER 71360 D ++ + LGE F P+ +IR Y R + ER Sbjct: 82 DWIAGAYPAE---LGEAQPFNPSWSIRALVRYDRHLWER 117 >ref|NP_046716.1|thioredoxin Length = 80 Score = 44.7 bits (104), Expect = 0.003 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Frame = -2 Query: 148022 LLKFWAPWCGPCKMMAPVVDEVADEKAGGLKVVSVNVDDAPEIAAEQGVRGVP-TVMLFK 147846 L+K P C PCKM++ +++V ++ +V+V PE+AA GV GVP T++L Sbjct: 3 LIKLEQPNCNPCKMVSNYLEQV------NIQFETVDVTQEPEVAARFGVMGVPVTILLSD 56 Query: 147845 SGAKVASLVG 147816 G +V VG Sbjct: 57 QGEEVNRSVG 66 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 43.5 bits (101), Expect = 0.006 Identities = 35/122 (28%), Positives = 54/122 (44%) Frame = +3 Query: 102669 ESLTLAHGRLAALAWGDPEAPTWLALHGWLDNAESFSRLAPLLVEALGIRIVAIDFPGHG 102848 E++ LA G ++ AP + LHG +A+++ + L E G R++A+D HG Sbjct: 4 ETIVLADGFRVGVSTVGTGAPL-VFLHGLSVSAKAYEEMLTRLAEH-GFRVIALDAANHG 61 Query: 102849 HSQPRAEGGDYPIWEYTXXXXXXXXXXXXECAPLLAHSMGAAVSCLVAAAMPERVAHLVL 103028 S G + + + T A HSMG + +AA P RVA VL Sbjct: 62 RSGSLPTG--HTVEDMTRVTLKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVL 119 Query: 103029 ID 103034 +D Sbjct: 120 LD 121 >ref|NP_817815.1|gp54 Length = 920 Score = 43.1 bits (100), Expect = 0.008 Identities = 71/295 (24%), Positives = 108/295 (36%), Gaps = 19/295 (6%) Frame = -2 Query: 61082 HITSRSSHWLAALVAMGLATP--ALAAYPEKPITLIVPWAAGGGTDATARIIAKALEEEL 60909 H + +S+ A +G TP L + + P W A GT +++ AL E Sbjct: 325 HASPKSATAHTAGCTLGRYTPDAPLHIWTDNPGEPFDSWIAANGTKTMSKLQVVALTEYG 384 Query: 60908 GETINVVNRTG----GSGVVGHTAIARAKPDGYTLGLGTVEINMMHWQGLTDLTYEDFTP 60741 G ++ G + +I K G+ T ++ W D+ P Sbjct: 385 GNIGKAMDSLGLIPSAPTMAADGSILDGKATEREAGVDTANMDAPLWG---DVPTPGPAP 441 Query: 60740 IGQINFDAASLSVAEDADYQDLDDLMSAVREAPAGTFNASGTGLGGIWHVALGGLLMD-- 60567 AA+ + AE A Y V E GTF A G +WH+ +GG + D Sbjct: 442 TDWPTEQAAAAAAAETAPY-------CPVCETGDGTFQADADG--DLWHLPVGGDVGDEH 492 Query: 60566 LDMPADKVNWVPSQGAAPAMTELAAG--GVDMAATSLPEARSMI--DAGRV-------RS 60420 L PA++ P A + + G G D A + P A +AG + Sbjct: 493 LAEPAEEEEPAP---VADLFSGVGPGQQGTDAPAPATPPADVPFGDEAGPADPHVLNSAT 549 Query: 60419 LGVMAEEPLESFPDVPTVASQVDSDFTTGAWRGVIGPQGMDDAIVETLESALHDA 60255 GV P + D+P +D G +IGP G+ + V L+ A H A Sbjct: 550 FGVPVIAPFAHWRDMPPPEYIIDGLLENGGLSCIIGPPGVGKSSV-ALDMACHIA 603 >ref|NP_891714.1|hypothetical protein Length = 279 Score = 42.7 bits (99), Expect = 0.010 Identities = 21/76 (27%), Positives = 41/76 (53%) Frame = +2 Query: 105785 RVLDLCAGSGCIGIATALYLPTAEVDLVDISPDALAVAKANIVRHDVGHRVRAVTSDLFA 105964 +VLDLCAG G + ++ V+++P+ + K + + +TSD+F Sbjct: 67 KVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEW------ITSDVFE 120 Query: 105965 GVAGQRYDVIVSNPPY 106012 + +++DV++SNPP+ Sbjct: 121 FESNEKFDVVISNPPF 136 >ref|NP_047971.2|gp26 Length = 174 Score = 42.7 bits (99), Expect = 0.010 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +1 Query: 100165 ISRGEIAVGDKLPPENGLCEMFGVSRTVIREAITHLKSLGLVETRRGIGTRV 100320 I+ G GDKLP E +CE G+ RT +R+ + L + G++E + RV Sbjct: 34 IATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGILEVHQRSAYRV 85 >ref|NP_861914.1|Cd dCMP deaminase Length = 169 Score = 42.0 bits (97), Expect = 0.017 Identities = 23/50 (46%), Positives = 30/50 (60%) Frame = +1 Query: 67237 LHGEMDALENAGRLPAHVYREAVLYTTLSPCPMCSGAIVLYGIPEVVIGE 67386 +H E++A+ A R + A LYTTLSPCP C+ AI GI +VV E Sbjct: 103 IHAELNAILFAAR-KGNSIEGATLYTTLSPCPDCTKAITQSGIKKVVYAE 151 >ref|NP_049618.1|gp60 topoisomerase II, large subunit, C-terminal region Length = 160 Score = 41.2 bits (95), Expect = 0.029 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 4/144 (2%) Frame = +3 Query: 25986 SKLRYHKICILADADSDGLHIATLLCALFVRHFPALVDAGHVFVAMPPLYRIDLGKEVHY 26165 S + Y + I+ DAD DGL F ++P L + G + P+ +GK+ + Sbjct: 29 SSMNYANVAIMTDADHDGLGSIYPSLLGFFSNWPELFEQGRIRFVKTPVIIAQVGKKQEW 88 Query: 26166 ----ALDESEKTAILKRLEGKRGTPNVQRFKGLGEMSPLQLRETTMAADTRRLVQLTLTV 26333 A ES K A+ K +++ KGLG + + RE + V + + Sbjct: 89 FYTVAEYESAKDALPKH--------SIRYIKGLGSLEKSEYREM-----IQNPVYDVVKL 135 Query: 26334 GDGTREMMDMLLAKKRAGDRKNWL 26405 + +E+ +ML+ A RK W+ Sbjct: 136 PENWKELFEMLMG-DNADLRKEWM 158 >ref|NP_052116.1|internal virion protein D Length = 1320 Score = 41.2 bits (95), Expect = 0.029 Identities = 24/90 (26%), Positives = 43/90 (47%) Frame = -3 Query: 71629 PPAYRDAFSAWGQRNGVDPYLLMAISRRESAFNREAVSPVGARGLMQLMPGTADHVSRDL 71450 P + F ++GV LL ++ ES+FN +A SP G +GLMQ GTA + L Sbjct: 8 PSEFDGLFQKAADKHGVSYDLLRKLAFNESSFNPKAKSPTGPKGLMQFTKGTA--TALGL 65 Query: 71449 NIDAPTLGELFEPTTNIRLGSAYIRDMMER 71360 + + + P + + ++ D++ + Sbjct: 66 KVTDADDDDRYNPELAVDAAARHLSDLIRK 95 >ref|NP_046572.1|ABC transporter Length = 705 Score = 40.8 bits (94), Expect = 0.037 Identities = 46/217 (21%), Positives = 93/217 (42%), Gaps = 12/217 (5%) Frame = +3 Query: 91752 ITMQFGAKPL---FENVSVKFGEGNRYGLIGANGCGKSTFMKILGGDLEPTSGQVMKDAT 91922 + + GA P+ E++++ ++ +IG +G GKSTF K L + + D + Sbjct: 486 VNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYK------VPDKS 539 Query: 91923 TRLGKLSQDQFAFESERVIDTVIMGNTELWEVAAERE----RIYSQTEMSEEDGMK---- 92078 L L +++ S R I N L++ + I+ Q E+ M Sbjct: 540 IYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHE 599 Query: 92079 -VADLEVRYAELDGYTXXXXXXXXXXXXXIPLVQHTQPMSVVAPGWKLRVLLAQALFSDP 92255 + +L+ +Y+ + ++ S ++ G K R+ LA+A+ P Sbjct: 600 FICNLDKQYS----------------------YKLSENGSNLSTGQKQRLALARAILHQP 637 Query: 92256 DVLLLDEPTNHLDINTIRWLEEILRSRSSTMLIISHD 92366 VL+LDE +++D + + + E L +++I+H+ Sbjct: 638 QVLILDESLSNIDPDNTKLIYETLHRMDCLIILITHN 674 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 40.0 bits (92), Expect = 0.064 Identities = 38/105 (36%), Positives = 44/105 (41%), Gaps = 10/105 (9%) Frame = -1 Query: 18867 RESRSRMPATRPGHRQDARHPAARDR-NARESGKAGDW*SRA----SPASPFRRWPRLPA 18703 R R+R P TR + HP A R R G R+ P P RR P PA Sbjct: 7 RLRRARPPHTRTPAPRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRAPSRPA 66 Query: 18702 ATPRH----SGTSTRHRAPRCCPGPRGSVREWRFHP-APHRSPGA 18583 A PR + T R RAP C P P +V HP AP +P A Sbjct: 67 AGPRRHPPVARTRPRTRAPECAPDPGPAV-----HPAAPGCAPAA 106 >ref|NP_899367.1|dCMP deaminase Length = 150 Score = 40.0 bits (92), Expect = 0.064 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 24/123 (19%) Frame = +1 Query: 67159 IGSVLVHRGEIIGRGHN-------------------QRQQRGSAILHGEMDALENAGRLP 67281 +G+V+V II G+N RQ +H E +A+ A R Sbjct: 31 VGAVIVKNDRIISHGYNGTPSGMLHCKDTADFGDLTHRQWSEIHEIHAEQNAICYAAR-- 88 Query: 67282 AHVYRE-AVLYTTLSPCPMCSGAIVLYGIPEVVIGENTTFKGDEA----LLRERGVTLTI 67446 A + E A +Y T SPC C+ IV GI +++G + + G + LR+RGV + + Sbjct: 89 AGISTEGATMYVTASPCHNCAKLIVAAGIKILIVG--SIYSGSQPDWWHWLRDRGVKVIM 146 Query: 67447 HDD 67455 +D Sbjct: 147 FED 149 >ref|NP_817947.1|gp96 Length = 566 Score = 39.3 bits (90), Expect = 0.11 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Frame = +3 Query: 134343 LLVGEAGVGKTAIAEGLAKRIVEEDVPDVISDGVVYSLDMGTLLAGTKYRGDFEKRLKGL 134522 +L+G +G GKT + L E + P V LD+ L KY G+ E RL+G+ Sbjct: 317 MLIGVSGCGKTLSCQALG---AEWNWP-------VVRLDINALKG--KYVGESESRLRGI 364 Query: 134523 LAELRKQPNAILFIDEIHTVIG---AGAASGGV 134612 +++ I++IDE+ + +G+A GGV Sbjct: 365 FSKIDALGQVIVYIDEVEKALEGAVSGSADGGV 397 >ref|NP_795475.1|hypothetical protein Length = 1307 Score = 38.9 bits (89), Expect = 0.14 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%) Frame = +1 Query: 60307 WGPITPRQAPVV----KSLSTCEATVGTSGKLSRGSSAMTPRLRTRPASIIERASGSEVA 60474 WG I P + K + T+ GK+S+G A++ LRT A + ++G+E A Sbjct: 517 WGLIAAAAGPALSILGKGIGVIGGTIQAIGKMSKGIGALSGWLRTFKAGAVAASAGAEAA 576 Query: 60475 AMSTPPAASSVMAGAAPWLGTQLT 60546 A S S MAGA L +T Sbjct: 577 ATS-----MSGMAGAVTLLSNPVT 595 >ref|NP_049828.1|Cd dCMP deaminase Length = 193 Score = 38.9 bits (89), Expect = 0.14 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Frame = +1 Query: 67237 LHGEMDALENAGRLPAHVYREAVLYTTLSPCPMCSGAIVLYGIPEVVIGE--NTTFKGDE 67410 +H E++A+ A R + + A +Y TLSPCP C+ AI GI ++V E + G + Sbjct: 103 IHAELNAILFAARNGSSI-EGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKPGWD 161 Query: 67411 ALLRERGV 67434 +LR G+ Sbjct: 162 DILRNAGI 169 >ref|NP_859265.1|hypothetical protein Length = 645 Score = 38.1 bits (87), Expect = 0.24 Identities = 48/167 (28%), Positives = 62/167 (37%), Gaps = 6/167 (3%) Frame = +2 Query: 30845 EGPGGLRIHRPDAG-HGAPAVVLRDGDRARERTQ--RDA*GTAPGAFIIV--STAWRGAP 31009 +GP G R R + G G P G+R Q R G A A + +TA +G Sbjct: 355 QGPMGARGERGETGPRGEPGPAGPRGERGETGPQGPRGEPGPAGSAANVADATTAQKGIV 414 Query: 31010 GYFASAASEVAAGRRDGGQVAEGCRLSECATGAAEEWRAGGGVPAVAQYRYAVDPVG-AG 31186 ++ S+ V ++ A AEE AGGGVP P G G Sbjct: 415 QLSSATDSDDETKAATPKAVKAAMDVANEAKTKAEEAAAGGGVPG---------PKGDKG 465 Query: 31187 SSGPAVCRGVSAGRVEPGSAQPGGGRAHARSGTVASSGPRASQGRGG 31327 +GPA G + E G P G A G +GP QG G Sbjct: 466 DTGPAGPAGPKGDKGERGDTGPVG--ATGERGPAGDAGPAGPQGPKG 510 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 38.1 bits (87), Expect = 0.24 Identities = 48/167 (28%), Positives = 62/167 (37%), Gaps = 6/167 (3%) Frame = +2 Query: 30845 EGPGGLRIHRPDAG-HGAPAVVLRDGDRARERTQ--RDA*GTAPGAFIIV--STAWRGAP 31009 +GP G R R + G G P G+R Q R G A A + +TA +G Sbjct: 388 QGPMGARGERGETGPRGEPGPAGPRGERGETGPQGPRGEPGPAGSAANVADATTAQKGIV 447 Query: 31010 GYFASAASEVAAGRRDGGQVAEGCRLSECATGAAEEWRAGGGVPAVAQYRYAVDPVG-AG 31186 ++ S+ V ++ A AEE AGGGVP P G G Sbjct: 448 QLSSATDSDDETKAATPKAVKAAMDVANEAKTKAEEAAAGGGVPG---------PKGDKG 498 Query: 31187 SSGPAVCRGVSAGRVEPGSAQPGGGRAHARSGTVASSGPRASQGRGG 31327 +GPA G + E G P G A G +GP QG G Sbjct: 499 DTGPAGPAGPKGDKGERGDTGPVG--ATGERGPAGDAGPAGPQGPKG 543 >ref|NP_859099.1|hypothetical protein Length = 645 Score = 38.1 bits (87), Expect = 0.24 Identities = 48/167 (28%), Positives = 62/167 (37%), Gaps = 6/167 (3%) Frame = +2 Query: 30845 EGPGGLRIHRPDAG-HGAPAVVLRDGDRARERTQ--RDA*GTAPGAFIIV--STAWRGAP 31009 +GP G R R + G G P G+R Q R G A A + +TA +G Sbjct: 355 QGPMGARGERGETGPRGEPGPAGPRGERGETGPQGPRGEPGPAGSAANVADATTAQKGIV 414 Query: 31010 GYFASAASEVAAGRRDGGQVAEGCRLSECATGAAEEWRAGGGVPAVAQYRYAVDPVG-AG 31186 ++ S+ V ++ A AEE AGGGVP P G G Sbjct: 415 QLSSATDSDDETKAATPKAVKAAMDVANEAKTKAEEAAAGGGVPG---------PKGDKG 465 Query: 31187 SSGPAVCRGVSAGRVEPGSAQPGGGRAHARSGTVASSGPRASQGRGG 31327 +GPA G + E G P G A G +GP QG G Sbjct: 466 DTGPAGPAGPKGDKGERGDTGPVG--ATGERGPAGDAGPAGPQGPKG 510 >ref|NP_050557.1|hypothetical protein Length = 645 Score = 38.1 bits (87), Expect = 0.24 Identities = 48/167 (28%), Positives = 62/167 (37%), Gaps = 6/167 (3%) Frame = +2 Query: 30845 EGPGGLRIHRPDAG-HGAPAVVLRDGDRARERTQ--RDA*GTAPGAFIIV--STAWRGAP 31009 +GP G R R + G G P G+R Q R G A A + +TA +G Sbjct: 355 QGPMGARGERGETGPRGEPGPAGPRGERGETGPQGPRGEPGPAGSAANVADATTAQKGIV 414 Query: 31010 GYFASAASEVAAGRRDGGQVAEGCRLSECATGAAEEWRAGGGVPAVAQYRYAVDPVG-AG 31186 ++ S+ V ++ A AEE AGGGVP P G G Sbjct: 415 QLSSATDSDDETKAATPKAVKAAMDVANEAKTKAEEAAAGGGVPG---------PKGDKG 465 Query: 31187 SSGPAVCRGVSAGRVEPGSAQPGGGRAHARSGTVASSGPRASQGRGG 31327 +GPA G + E G P G A G +GP QG G Sbjct: 466 DTGPAGPAGPKGDKGERGDTGPVG--ATGERGPAGDAGPAGPQGPKG 510 >ref|NP_049519.1|putative tail fiber protein Length = 645 Score = 38.1 bits (87), Expect = 0.24 Identities = 48/167 (28%), Positives = 62/167 (37%), Gaps = 6/167 (3%) Frame = +2 Query: 30845 EGPGGLRIHRPDAG-HGAPAVVLRDGDRARERTQ--RDA*GTAPGAFIIV--STAWRGAP 31009 +GP G R R + G G P G+R Q R G A A + +TA +G Sbjct: 355 QGPMGARGERGETGPRGEPGPAGPRGERGETGPQGPRGEPGPAGSAANVADATTAQKGIV 414 Query: 31010 GYFASAASEVAAGRRDGGQVAEGCRLSECATGAAEEWRAGGGVPAVAQYRYAVDPVG-AG 31186 ++ S+ V ++ A AEE AGGGVP P G G Sbjct: 415 QLSSATDSDDETKAATPKAVKAAMDVANEAKTKAEEAAAGGGVPG---------PKGDKG 465 Query: 31187 SSGPAVCRGVSAGRVEPGSAQPGGGRAHARSGTVASSGPRASQGRGG 31327 +GPA G + E G P G A G +GP QG G Sbjct: 466 DTGPAGPAGPKGDKGERGDTGPVG--ATGERGPAGDAGPAGPQGPKG 510 >ref|YP_164061.1|endolysin Length = 264 Score = 37.7 bits (86), Expect = 0.32 Identities = 29/86 (33%), Positives = 43/86 (50%) Frame = -3 Query: 71617 RDAFSAWGQRNGVDPYLLMAISRRESAFNREAVSPVGARGLMQLMPGTADHVSRDLNIDA 71438 R A + WG + + A +ES + +A SPVGA+GL Q MPGTA+ ++ L A Sbjct: 93 RAAHAEWGLSAPIATF--GAQVHQESRWRADARSPVGAQGLAQFMPGTAEWIA-GLYPAA 149 Query: 71437 PTLGELFEPTTNIRLGSAYIRDMMER 71360 + F P +R Y R + +R Sbjct: 150 LGTNQPFNPGWALRALVTYDRWLYDR 175 >ref|YP_024716.1|gp43 Length = 128 Score = 37.4 bits (85), Expect = 0.41 Identities = 22/65 (33%), Positives = 31/65 (47%) Frame = -1 Query: 83361 AGHDEVAHAGQTDERQRVGAKRHRESAHLRQRPRHQHAARVLAHAERRCHARGDGIDVLQ 83182 AGHD G+ ++R RH L ++P +H A H +A GDG+DV + Sbjct: 54 AGHDGRPEEGEAEKRHDAEHDRHGPPGQLDEQPDGEHDAGNRDHGVG--NAFGDGLDVHE 111 Query: 83181 RPAEF 83167 RP F Sbjct: 112 RPRHF 116 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 761,676,153 Number of Sequences: 14420 Number of extensions: 16023602 Number of successful extensions: 59672 Number of sequences better than 0.5: 42 Number of HSP's better than 0.5 without gapping: 11203 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 59520 length of database: 3,019,461 effective HSP length: 124 effective length of database: 1,231,381 effective search space used: 65210243617 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig67 (154,963 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 151 1e-35 ref|YP_195193.1|hypothetical protein 79 1e-13 ref|YP_006528.1|ParA 65 2e-09 ref|NP_046923.1|gp28 64 5e-09 ref|YP_006605.1|Gp25 63 7e-09 ref|NP_665964.1|putative plasmid partitioning protein Soj 62 2e-08 ref|NP_892074.1|partitioning protein SpyA 58 2e-07 ref|NP_945016.1|unknown 58 3e-07 ref|NP_945015.1|unknown 58 3e-07 ref|NP_945089.1|gp58 54 5e-06 ref|NP_818251.1|gp200 53 9e-06 ref|YP_006944.1|NAD-dependent DNA ligase, subunit A 48 2e-04 ref|NP_758949.1|ORF58 46 9e-04 ref|NP_891714.1|hypothetical protein 44 0.004 ref|YP_164321.1|hypothetical protein 40 0.048 ref|YP_024488.1|putative glycerophosphoryl diester phosphodieste... 40 0.062 ref|NP_958267.1|hypothetical protein 38 0.24 ref|NP_056689.1|putative minor tail protein 38 0.31 >ref|NP_046572.1|ABC transporter Length = 705 Score = 151 bits (382), Expect = 1e-35 Identities = 119/496 (23%), Positives = 225/496 (45%), Gaps = 2/496 (0%) Frame = -2 Query: 2289 LMLPLFVIGMFAARGVGTFLGTYYMSDVARNVVHALRCEVFNHMLRLPGRFFDMHSSGHL 2110 + + L I M R + F+ +Y + ++ V + FN + +LP FF+ G + Sbjct: 206 ITITLIFISMVLIRCIFDFVRSYLIIKLSYKVDKEMSNVYFNKVTKLPINFFENREDGEV 265 Query: 2109 LSRVTYHVEQVTGAATNAITIILREGLFVIGLVSYLLWTNWMLTLIFMAVTPLIGLVVNY 1930 +SR + + N +T I+ + + ++GL L TN +L L + L+ + Sbjct: 266 ISRFNDGIYIKDFFSANFVTAII-DIILILGLGVILYRTNNILFLTIILPILLLSCLAIL 324 Query: 1929 TSKRFRRLSRRIQNSMGDVTHVASEALSGYRVVRTHGAEAYEKARFAEASDYNREQSMKV 1750 ++ ++++ T + L V + ++ +F D + V Sbjct: 325 FFDHLKKKNQKLMEDKAKSTSLLINFLKNMTTVYSLNKTSFFLEKFHLTYDKQLNSTFSV 384 Query: 1749 ALTKAVSTPVIQLLVALSLAGLV-WLAMSPALMASMTPGEFVAFITAASLMAKPVRQLTE 1573 A +S +++ L+ S ++ W+ L SM+ G + T A+ + + ++ Sbjct: 385 AKA-VISNEILKGLIQNSFTIIILWVGTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILS 443 Query: 1572 VNSTIQKGLSASQELFGLLEQPPEVDEGSYVPARIDGRVRFEGVRFRYGEDQAE-VLKGI 1396 + S +Q+ AS F ++ P + D + +D + V G D +++ I Sbjct: 444 MQSDLQQAHVASIRFFDVVNYPVQQDSNENL-TELDFIQNIKTVNLNIGADPMRYIVEDI 502 Query: 1395 DLDVPQGEMIAIVGRSGSGKSTLVSLMPRFYRPTEGRVLLDDVDIQEYALSPLRQRIALV 1216 +L + + + + I+G SG+GKST + + Y+ + + L+ +DI Y +R+RI + Sbjct: 503 NLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYI 562 Query: 1215 SQQVTLFNTTIAANIAYGHPDADREAVESAARSAYAHEFIERLPNGYDTVVGDNGVMLSG 1036 + LF TI N+ G D+ +E+A + HEFI L Y + +NG LS Sbjct: 563 DENPFLFKGTIKENLCMGEI-FDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLST 621 Query: 1035 GQRQRLAIARAIFKDAPLLVLDEATSALDTESERYIQQALERVCRGRTTFVIAHRLSTIE 856 GQ+QRLA+ARAI +L+LDE+ S +D ++ + I + L R+ +I H + Sbjct: 622 GQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM--DCLIILITHNDPSNF 679 Query: 855 RADRILVMEQGEIIES 808 + ++ LV IIES Sbjct: 680 KYNKKLVFRNNRIIES 695 Score = 83.6 bits (205), Expect = 5e-15 Identities = 63/221 (28%), Positives = 114/221 (51%), Gaps = 10/221 (4%) Frame = -1 Query: 129238 NENVEE-NLSVRVRDLNLWYGD---HQALKDISIDIFANTVTALIGPSGCGKSTFLRCLN 129071 NEN+ E + ++ +NL G ++DI++ + +IG SG GKSTF + L+ Sbjct: 471 NENLTELDFIQNIKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLS 530 Query: 129070 RMNDLINSVSIKGLVEMDGHDVNARGMDEVALRRRVGMVFQKPNPFPKSIYENVAYAPRM 128891 ++ + + + ++G D+N D +++R+R+ + + P F +I EN+ Sbjct: 531 KLYKVPDKS-----IYLNGLDINR--YDHLSIRKRIVYIDENPFLFKGTIKENLC----- 578 Query: 128890 HDMVSRKADQDELVERALRD------AGLWNEVKDKLHEPGTSLSGGQQQRLCIARAIAV 128729 + DQ+E+ + L + KL E G++LS GQ+QRL +ARAI Sbjct: 579 ---MGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILH 635 Query: 128728 RPDVILMDEPTSALDPISTATIEDLMDKLKKDFTIVTVTHN 128606 +P V+++DE S +DP +T I + + ++ D I+ +THN Sbjct: 636 QPQVLILDESLSNIDPDNTKLIYETLHRM--DCLIILITHN 674 Score = 40.0 bits (92), Expect = 0.062 Identities = 19/60 (31%), Positives = 35/60 (58%) Frame = -3 Query: 5831 LSGGERQRVAIARALVTDPSLVLMDEPTGNLDQTTAGHILALMDGLAAQSACAFIIVTHD 5652 LS G++QR+A+ARA++ P ++++DE N+D I + + C I++TH+ Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLH----RMDCLIILITHN 674 >ref|YP_195193.1|hypothetical protein Length = 120 Score = 79.0 bits (193), Expect = 1e-13 Identities = 44/89 (49%), Positives = 54/89 (60%), Gaps = 2/89 (2%) Frame = -1 Query: 97555 ASYYH--DRYQGQRTASGEPYDAQALTAAHRRLPFDTRVRVTNLDNGRQVTVRINDRGPF 97382 AS+Y D Y GQRTA+GE Y+A + AHR LPF TR+RVTN G+ V VR+NDRGP+ Sbjct: 30 ASHYGIGDGYHGQRTANGERYNAYGKSVAHRYLPFGTRLRVTNQRTGKSVIVRVNDRGPY 89 Query: 97381 TEGRVIDLSRRAAERLGMIKAGTAPVRVT 97295 R +DLS A + G A V T Sbjct: 90 VYDRDLDLSYGAFSTIAPPSQGVARVCYT 118 Score = 72.0 bits (175), Expect = 1e-11 Identities = 38/80 (47%), Positives = 47/80 (58%) Frame = -1 Query: 47566 GTKFQGYDTASGEPYDMYKMSAAHRTLPLPTYARVTNLDNGRDVIVRINDRGPFHGDRLI 47387 G + G TA+GE Y+ Y S AHR LP T RVTN G+ VIVR+NDRGP+ DR + Sbjct: 36 GDGYHGQRTANGERYNAYGKSVAHRYLPFGTRLRVTNQRTGKSVIVRVNDRGPYVYDRDL 95 Query: 47386 DLSYAAAARLKILGGGTGHV 47327 DLSY A + + G V Sbjct: 96 DLSYGAFSTIAPPSQGVARV 115 >ref|YP_006528.1|ParA Length = 398 Score = 65.1 bits (157), Expect = 2e-09 Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 25/195 (12%) Frame = +3 Query: 114198 HTSLPRCPTRHLPGDASMKMLAIYSIKGGVGKTASAVNLAALASQAGY------RVLLWD 114359 H +P+ R+ + ++ I ++KGGV KT S V+LA + R+L+ D Sbjct: 95 HRGVPKYRDRY----SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVID 150 Query: 114360 LDPQAATTFYLRAKPKVRGGVDKLVKGKASFDKVIRT---------SETPGLDLLPASFG 114512 LDPQ++ T +L K + G+ +A V R S PG+D++PAS Sbjct: 151 LDPQSSATMFLSHKHSI--GIVNATSAQAMLQNVSREELLEEFIVPSVVPGVDVMPASID 208 Query: 114513 S-------REL--DHLLEDRKLSRLRK-ILKPVHDDYDLVILDCPPSISTLSEHVFSSAD 114662 REL +HL + L++ ++ + DYD +++D P + ++ +SA+ Sbjct: 209 DAFIASDWRELCNEHLPGQNIHAVLKENVIDKLKSDYDFILVDSGPHLDAFLKNALASAN 268 Query: 114663 ALLVPVIPTTLSLRT 114707 L P+ P T+ + Sbjct: 269 ILFTPLPPATVDFHS 283 >ref|NP_046923.1|gp28 Length = 387 Score = 63.5 bits (153), Expect = 5e-09 Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 15/162 (9%) Frame = +3 Query: 114234 PGDASMKMLAIYSIKGGVGKTASAVNLAALASQAGYRVLLWD-LDPQAATTFYLRAKPKV 114410 P D + +L++ S KGGV KT+SAV+ A + G+RVLL + DPQ + Y P + Sbjct: 101 PDDKNPVVLSVMSHKGGVYKTSSAVHQAQWLALQGHRVLLVEGNDPQGTASMYHGYVPDL 160 Query: 114411 RGGVDKLV----KGKA-SFDKVIRTSETPGLDLLPASFGSRELDHLL----EDRKLSR-- 114557 D + GK + + I+ + PGLD++P+ ++ L + KL Sbjct: 161 HIHADDTLLPFYLGKRDNAEYAIKPTCWPGLDIIPSCLALHRIETDLMQYHSEGKLPHPP 220 Query: 114558 ---LRKILKPVHDDYDLVILDCPPSISTLSEHVFSSADALLV 114674 LR ++ V D+YD++++D P++ T + +V +AD ++V Sbjct: 221 HLMLRAAIESVWDNYDIIVIDSAPNLGTGTINVVCAADVIVV 262 >ref|YP_006605.1|Gp25 Length = 387 Score = 63.2 bits (152), Expect = 7e-09 Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 15/162 (9%) Frame = +3 Query: 114234 PGDASMKMLAIYSIKGGVGKTASAVNLAALASQAGYRVLLWD-LDPQAATTFYLRAKPKV 114410 P D + +LA+ S KGGV KT+SAV+ A + G+RVLL + DPQ + Y P + Sbjct: 101 PADKNPAVLAVMSHKGGVYKTSSAVHEAQWLALQGHRVLLIEGNDPQGTASMYHGYVPDL 160 Query: 114411 RGGVDK-----LVKGKASFDKVIRTSETPGLDLLPASFGSRELD-HLLEDRKLSR----- 114557 D + + + + I+ + PGLD++P+ ++ L++ + Sbjct: 161 HIHADDTLLPFYLGERDNAEYAIKPTCWPGLDIIPSCLALHRIETDLMQYHAQGKLPHPP 220 Query: 114558 ---LRKILKPVHDDYDLVILDCPPSISTLSEHVFSSADALLV 114674 LR ++ V D+YD++++D P++ T + +V +AD ++V Sbjct: 221 HLMLRAAIESVWDNYDIIVIDSAPNLGTGTINVVCAADIIVV 262 >ref|NP_665964.1|putative plasmid partitioning protein Soj Length = 256 Score = 61.6 bits (148), Expect = 2e-08 Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 7/171 (4%) Frame = +3 Query: 114258 LAIYSIKGGVGKTASAVNLAALASQAGYRVLLWDLDPQAATTFYLRAK-----PKVRGGV 114422 + + + KGG GKT + +N+A +Q G VL+ DLDPQ T L + P+ Sbjct: 3 IGVTNQKGGAGKTTTTLNVAGALNQLGNDVLVIDLDPQGHATEGLGFEDLYDDPERDSLF 62 Query: 114423 DKLVKGKASFDKVIRTSETPGLDLLPASFGSRELDHLLED--RKLSRLRKILKPVHDDYD 114596 D L + + + E +D +P+ + L + ++ RL +L +D Sbjct: 63 DVLPELERMDELEQLVVEHQEVDCVPSHETMINAEDALANVMKREERLEMLLDDADGRWD 122 Query: 114597 LVILDCPPSISTLSEHVFSSADALLVPVIPTTLSLRTLEQLREHLDDVDHA 114749 V++DCPP++ L+++ + +L+P + S+R +E L + L ++ A Sbjct: 123 YVLVDCPPNLGVLTDNAIVATGNVLIPAQAKSTSIRAIELLFKQLRSIESA 173 >ref|NP_892074.1|partitioning protein SpyA Length = 389 Score = 58.2 bits (139), Expect = 2e-07 Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 20/183 (10%) Frame = +3 Query: 114255 MLAIYSIKGGVGKTASAVNLAALASQAGYRVLLWDL-DPQAATTFYLRAKPKVRGGVDKL 114431 +LAI + KGG KT+++V+ A + G RVLL D DPQA + Y P + D+ Sbjct: 108 VLAIAAHKGGAYKTSTSVHTAQWLALQGLRVLLIDATDPQATASLYHGYVPDLHIHEDET 167 Query: 114432 VKGKASFDK-----VIRTSETPGLDLLPASFG----SRELDHLLEDRKLS-----RLRKI 114569 + ++ I+ + P LD++P+ EL L + KL LR Sbjct: 168 LLPYYLGERDDAMYAIKPTCWPNLDIIPSCLAIHRIESELYPLHDAEKLPVAPHMMLRAA 227 Query: 114570 LKPVHDDYDLVILDCPPSISTLSEHVFSSADALLVPVIPTTL-----SLRTLEQLREHLD 114734 ++ V D YD+V+LD P++ + +V +AD ++VP P L +L+ LR+ + Sbjct: 228 IESVWDSYDVVVLDSAPNLGIGTINVVCAADVIVVPT-PAELYDYVSTLQFFTMLRDLMA 286 Query: 114735 DVD 114743 VD Sbjct: 287 GVD 289 >ref|NP_945016.1|unknown Length = 293 Score = 57.8 bits (138), Expect = 3e-07 Identities = 72/284 (25%), Positives = 120/284 (42%), Gaps = 23/284 (8%) Frame = +1 Query: 71752 QFSDGEIA-------VEINENVRGKDVFVLQSTCAPTNDNLMELILM---VDALRRASAT 71901 QF GEI V+ E GK V+ + D L L L VD+L + Sbjct: 25 QFPSGEIGGNFSEDFVKFTERNAGKIDNVIITVQGYDKDTLFALALAKDAVDSLVPQKSA 84 Query: 71902 RITAVVPYFGYARQDRRVRSARVPISAKLVADMMVKAGVDRVMTMDLHADQIQGFF---- 72069 T V + AR DR + + K+ A+++ G D V +D H++ + F Sbjct: 85 MKTVVFGFLPNARYDRHMFKGDAA-ALKVFANLVNAMGFDAVCALDPHSNVAENLFKCFQ 143 Query: 72070 -----DVPVDNVYGSPILLDDIERQNYXXXXXXXXXXXXXXRARAIAKQLNADLAIIDK- 72231 DV V Y + L+D + + + AK+++ + K Sbjct: 144 SMKQKDVAVH--YANDPLIDYLVAPD----------AGASKKIAETAKEVDKPYITMSKV 191 Query: 72232 RRPQANQAQVMHIIGDIQ--DRTCVVVDDMVDTAGTLCKAAEALKGHGARRVVAYATHPI 72405 R + + M I+ D+ D+T +++DD+ D T +AA+ L+ GA+RV Y TH I Sbjct: 192 RNLKTGEITGMRILDDVDLTDKTVMILDDICDGGRTFVEAAKHLREAGAKRVELYVTHGI 251 Query: 72406 LSGPAVDNIVGSVLDELVVADTIPLSETASRS-GRIRQLSVAGL 72534 S V+N++ + +D + ++ L E R Q++VA L Sbjct: 252 FS-KDVENLLDNGIDHIYTTNS--LGEAKDRGLTHYSQVTVANL 292 >ref|NP_945015.1|unknown Length = 298 Score = 57.8 bits (138), Expect = 3e-07 Identities = 72/284 (25%), Positives = 120/284 (42%), Gaps = 23/284 (8%) Frame = +1 Query: 71752 QFSDGEIA-------VEINENVRGKDVFVLQSTCAPTNDNLMELILM---VDALRRASAT 71901 QF GEI V+ E GK V+ + D L L L VD+L + Sbjct: 30 QFPSGEIGGNFSEDFVKFTERNAGKIDNVIITVQGYDKDTLFALALAKDAVDSLVPQKSA 89 Query: 71902 RITAVVPYFGYARQDRRVRSARVPISAKLVADMMVKAGVDRVMTMDLHADQIQGFF---- 72069 T V + AR DR + + K+ A+++ G D V +D H++ + F Sbjct: 90 MKTVVFGFLPNARYDRHMFKGDAA-ALKVFANLVNAMGFDAVCALDPHSNVAENLFKCFQ 148 Query: 72070 -----DVPVDNVYGSPILLDDIERQNYXXXXXXXXXXXXXXRARAIAKQLNADLAIIDK- 72231 DV V Y + L+D + + + AK+++ + K Sbjct: 149 SMKQKDVAVH--YANDPLIDYLVAPD----------AGASKKIAETAKEVDKPYITMSKV 196 Query: 72232 RRPQANQAQVMHIIGDIQ--DRTCVVVDDMVDTAGTLCKAAEALKGHGARRVVAYATHPI 72405 R + + M I+ D+ D+T +++DD+ D T +AA+ L+ GA+RV Y TH I Sbjct: 197 RNLKTGEITGMRILDDVDLTDKTVMILDDICDGGRTFVEAAKHLREAGAKRVELYVTHGI 256 Query: 72406 LSGPAVDNIVGSVLDELVVADTIPLSETASRS-GRIRQLSVAGL 72534 S V+N++ + +D + ++ L E R Q++VA L Sbjct: 257 FS-KDVENLLDNGIDHIYTTNS--LGEAKDRGLTHYSQVTVANL 297 >ref|NP_945089.1|gp58 Length = 297 Score = 53.5 bits (127), Expect = 5e-06 Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Frame = +1 Query: 41278 LQVFQAVHRQQSYSRAAEQLGLTQPAVSAQIRQLEQALEQPLFKYAGKTLHVLPAADALA 41457 L F A R +++RAAE+L + Q AVS Q+ +LE L LF K LH+ A A Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71 Query: 41458 ASVQSIFGQ-VSSLQMELSELAGTIRGELNLAAVS-TAQYVVPHILARFRARYPEVQVRL 41631 V +I V + + + E L +A S TA + +A F A +PEV VR+ Sbjct: 72 DRVHAILADCVEATALVMKE---QTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRI 128 Query: 41632 RV 41637 V Sbjct: 129 LV 130 >ref|NP_818251.1|gp200 Length = 113 Score = 52.8 bits (125), Expect = 9e-06 Identities = 27/46 (58%), Positives = 32/46 (69%) Frame = -3 Query: 65969 DLRVDTFRSSGAGGQHVNTTDSAIRITHLPSGLVVECQEERSQHKN 65832 D V+T R G GGQ+ NT D+A+RI H PSG V E QEERSQ +N Sbjct: 8 DCVVETKRGHGNGGQNRNTRDTAVRIVHPPSGAVGESQEERSQLQN 53 >ref|YP_006944.1|NAD-dependent DNA ligase, subunit A Length = 323 Score = 48.1 bits (113), Expect = 2e-04 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 2/108 (1%) Frame = +3 Query: 80268 TDGVVVKRGDRPP--GSDWQASPPDWAMAWKYPAREALARVDALEFSVGRTGRIAVVAEL 80441 TDG VV+ D W P A A K + + +E+ VG +G++ V Sbjct: 214 TDGKVVRINDNNKFFREGWTNKFPRGAFAIKEDEEGEITTLTKVEWQVGASGKVTPVGYF 273 Query: 80442 EPVLLGDKRVTRVSLGSLAHWRRTDVRPGDQVRLRLAGLTIPQLQEVV 80585 EPV++ D + + +L ++ + D+ G Q+R+ AG IP + E V Sbjct: 274 EPVIIDDATIVKATLNNVDYINSLDLEIGCQIRVIRAGGVIPCIVERV 321 Score = 41.2 bits (95), Expect = 0.028 Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 6/142 (4%) Frame = +2 Query: 79550 IARWDRAYYRQGQRLVDDGTYDSAKRRLAHWAECFPLLAKPSVNTHEPTGAKHHPVAQTG 79729 I R AYY QG L+ D YD +R FPL + P G H Sbjct: 8 IKRCQEAYY-QGMSLISDEEYDRLVKR-------FPLEEEIG-----PKGDIPHLYRMYS 54 Query: 79730 IAKLPDRDAVAGWVARQGDHPLW------VQPKVDGVAVTLVYRHGRLAAAISRGDGVSG 79891 + K+ +GD P + K+DG A++L+Y +G A++RG+G+ G Sbjct: 55 LQKV---------YYNRGDKPPFNPLGQVETDKLDGCAISLLYINGEFVQALTRGNGILG 105 Query: 79892 QDWYTKALHIAAIPSHLPADAP 79957 D T + + IP + P Sbjct: 106 ND-VTSNVRLLNIPKKISQKVP 126 >ref|NP_758949.1|ORF58 Length = 210 Score = 46.2 bits (108), Expect = 9e-04 Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 4/194 (2%) Frame = +3 Query: 114252 KMLAIYSIKGGVGKTASAVNLAALASQAGYRVLLWDLDPQAATTFYLRAKPKVRGGVDKL 114431 K++AI + KGG GKT + N+A+ G++VLL DLDPQ + T + + V Sbjct: 21 KLIAILNQKGGAGKTTISTNVASQLHADGHKVLLVDLDPQGSATDWSEQAEEGSEAV--- 77 Query: 114432 VKGKASFDKVIRTSETPGLDLLPASFGSRELDHLLEDRKLSRLRKILKPVHDDYDLVILD 114611 VIR +T D+ + G LV +D Sbjct: 78 --------PVIRMGKTCTCDIHKVASGYEY-------------------------LVSVD 104 Query: 114612 CPPSISTLSEHVFSSADALLVPVIPTTL---SLRTLEQLREHLDDVDHACPVWPF-FTLA 114779 P ++ L+ +AD +L+P P+ S L ++ + +V P F + A Sbjct: 105 GAPQVADLAATAVRAADMVLIPTQPSPYDCWSAAELVEIVKARQEVTDGIPKAAFIISRA 164 Query: 114780 DRRKKLHLDVMATL 114821 +R KL ++ L Sbjct: 165 IKRTKLEAEIKEAL 178 >ref|NP_891714.1|hypothetical protein Length = 279 Score = 43.9 bits (102), Expect = 0.004 Identities = 25/79 (31%), Positives = 38/79 (48%) Frame = -2 Query: 65223 HATGRALDLGTGSGAIALALASERPAWHVVGVDKVPGAVRLATANAERLALSNATFLVSD 65044 H TG+ LDL G G ++ + +V V+ P R+ + L A ++ SD Sbjct: 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIG-----KRLLPEAEWITSD 117 Query: 65043 WFSALGNETFDVIAANPPY 64987 F NE FDV+ +NPP+ Sbjct: 118 VFEFESNEKFDVVISNPPF 136 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 40.4 bits (93), Expect = 0.048 Identities = 70/275 (25%), Positives = 93/275 (33%), Gaps = 7/275 (2%) Frame = +3 Query: 135447 RRGQPGPGLADRATSRRPGRDRREHGTADRD--RGAQRRACRTCRDPGRDRLALCRAGAG 135620 RRG PG AD+ +RR + + T +R +GA R RD L R AG Sbjct: 369 RRGGPGGAGADQPAARRGVQGQAGRRTVERRGLQGADAGGIRARRDDQEPVRRLPRRRAG 428 Query: 135621 SRLAGHHDHGEHSRRLAPGRGYRRHDRFTGVPDQPAGAQCLGRGGSCRAAWTRLLGGGQ* 135800 A G+ R P +G +G+GG R A RL Sbjct: 429 VCRADRRREGQVRRLRGPRQGR------------------VGQGGRARCAGPRL------ 464 Query: 135801 SEAPRQPERRGRARYPHPHRQRPAGCRGRQPARQGNGNHHRRTGRLGGADGPAHA*HRRR 135980 R+ H C+G+ A Q G H+ LGG R R Sbjct: 465 -------------RFDHSGVGEQGRCQGQGRADQDGGGAHQGVEVLGG---------RGR 502 Query: 135981 QPGTASRHRTDRSGDRAAGTTHPGQ--RRHGHAGDTRRHYAG*GNHTAACLGARV---RP 136145 G + + +R + G PG+ R G RR N + C + R Sbjct: 503 LQGHPA-GQPERGAVQHVGVPGPGRSLARSGQRQRGRRR-----NAISLCRHEQPDQHRL 556 Query: 136146 RRGQRIRTARTGVRRDGNGLSVAGRGDTGPSAGHR 136250 RR R R R G +G G+ GP A HR Sbjct: 557 RRNADQRVHREDAERRTAGADRSGGGE-GPGAVHR 590 >ref|YP_024488.1|putative glycerophosphoryl diester phosphodiesterase Length = 848 Score = 40.0 bits (92), Expect = 0.062 Identities = 19/59 (32%), Positives = 30/59 (50%) Frame = +1 Query: 99796 IAHRGLSARAPENTLXXXXXXXXXGCRWVELDVQLLGDGTPVIWHDAGVRRCSNGRGKL 99972 I HRG + E+T+ G ++ELD+QL D + HD+ + R + G GK+ Sbjct: 619 IGHRGATGYTDEHTIKGYQMALDKGADYIELDLQLTKDNKLLCMHDSTIDRTTTGTGKV 677 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 38.1 bits (87), Expect = 0.24 Identities = 72/252 (28%), Positives = 81/252 (32%), Gaps = 15/252 (5%) Frame = +3 Query: 135354 RGPRRHATASCRQRRRGARQQPDDPSRYPAHRRG--QPGPGLADRATSRRPGRDRREHGT 135527 R P A R RR R +P P PA R P P R RP R H Sbjct: 17 RTPAPRTRAHPRAHRR-VRTRPH-PHLGPARDRSPDHPEPDHPCRRAPSRPAAGPRRHPP 74 Query: 135528 ADRDRGAQRRACRTCRDPGRDRLALCRAGAGSRLAGHHDHGEHSRRLAPGRGYRRHDRFT 135707 R R + RA DPG + G ++ R AP H T Sbjct: 75 VARTR-PRTRAPECAPDPG-PAVHPAAPGCAPAAPAAPEYAPALRPRAPECDRGAHHLRT 132 Query: 135708 GVPDQPAGAQCLGRGGSCRAAWTRLLGGGQ*SEAPRQPERRGRARYPHPHRQRPAGCRGR 135887 P A LG G R P + RR R R+RP R Sbjct: 133 RAPRTRTRAVPLGPGARVRT--------------PVEDRRRTR------RRRRPDPRRRV 172 Query: 135888 QPARQGNGNHHRRTGRLGG-------ADGPAHA*HRRRQP------GTASRHRTDRSGDR 136028 QP R G G H RR R G GP A RR+P R RT R R Sbjct: 173 QP-RLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRRHRR 231 Query: 136029 AAGTTHPGQRRH 136064 A + P RRH Sbjct: 232 RA-SLRPRHRRH 242 >ref|NP_056689.1|putative minor tail protein Length = 1510 Score = 37.7 bits (86), Expect = 0.31 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 2/103 (1%) Frame = -1 Query: 15652 IGVIAALVQILEMFLDKFVPALYNALGVFLPLITVNCAILGASLFMVERSYDFGESVIYG 15473 I I A+VQ L + + + A+ A+ +P+I ++ A+L + I Sbjct: 791 ISAIVAVVQTLAPIISQIISAIVTAITQIVPIINSIGGVISAALSGIASIVSAAGMAIAT 850 Query: 15472 AGAGVGWALAITALAGIREKLKY--SDVPASLQGLGITFITVG 15350 A G+G A++ TAL+G+ + S + ++LQG+ +VG Sbjct: 851 AAMGIGTAIS-TALSGVASIISATGSAIGSALQGIASVVQSVG 892 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 714,034,371 Number of Sequences: 14420 Number of extensions: 14751759 Number of successful extensions: 56497 Number of sequences better than 0.5: 18 Number of HSP's better than 0.5 without gapping: 10860 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 56315 length of database: 3,019,461 effective HSP length: 124 effective length of database: 1,231,381 effective search space used: 63451831549 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig66 (146,678 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_076827.1|Csp 69 1e-10 ref|NP_665964.1|putative plasmid partitioning protein Soj 57 4e-07 ref|NP_945090.1|gp59 56 1e-06 ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase 49 2e-04 ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase 44 0.003 ref|NP_958267.1|hypothetical protein 42 0.016 ref|NP_047971.2|gp26 40 0.078 ref|NP_817695.1|gp17 39 0.17 ref|NP_859265.1|hypothetical protein 38 0.23 ref|NP_612899.1|hypothetical protein 38 0.23 ref|NP_859099.1|hypothetical protein 38 0.23 ref|NP_038301.1|ORF1 38 0.23 ref|NP_050557.1|hypothetical protein 38 0.23 ref|NP_049519.1|putative tail fiber protein 38 0.23 ref|YP_024895.1|putative membrane protein 37 0.39 >ref|NP_076827.1|Csp Length = 66 Score = 68.9 bits (167), Expect = 1e-10 Identities = 34/52 (65%), Positives = 42/52 (80%) Frame = +1 Query: 1 GFISPEDGGDDLFAHFSEIQAEGFKSLQDGQKVSFDVTQGKKGLQASNIKPA 156 GFI+ E+G DLFAHFS IQ++GFKSL +GQKV FDV +G++GLQA NI A Sbjct: 16 GFITSEEG-KDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQAVNITKA 66 >ref|NP_665964.1|putative plasmid partitioning protein Soj Length = 256 Score = 57.4 bits (137), Expect = 4e-07 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 11/168 (6%) Frame = +2 Query: 52811 RLMITGPSPAVGKSFITANLAAVCAQNGQRVLVID----GDMRKGQ-MHKIFKGPSEDGL 52975 R+ +T GK+ T N+A Q G VLVID G +G ++ P D L Sbjct: 2 RIGVTNQKGGAGKTTTTLNVAGALNQLGNDVLVIDLDPQGHATEGLGFEDLYDDPERDSL 61 Query: 52976 SEILAGRHTLEEMVRPVESIEGLEYLARGVVPPNASELLAS-----ERFTELLAKASERY 53140 ++L ++E+ + V + ++ + NA + LA+ ER LL A R+ Sbjct: 62 FDVLPELERMDELEQLVVEHQEVDCVPSHETMINAEDALANVMKREERLEMLLDDADGRW 121 Query: 53141 DLVIVDSPPVLAV-TDATVIGKRVGTTLMVARFQLNPPKEIELAMRRL 53281 D V+VD PP L V TD ++ G L+ A+ + + IEL ++L Sbjct: 122 DYVLVDCPPNLGVLTDNAIVA--TGNVLIPAQAKSTSIRAIELLFKQL 167 >ref|NP_945090.1|gp59 Length = 429 Score = 55.8 bits (133), Expect = 1e-06 Identities = 95/422 (22%), Positives = 149/422 (35%), Gaps = 13/422 (3%) Frame = -3 Query: 73389 TVDGLQSSFNSDSVGTGFNVASMLLGCAVGAFFAGRLADKYGRRTLLLVAAVFFIVSAWG 73210 T D L + ++G GF + +G G +ADK GRR L V Sbjct: 55 TDDNLSLLLSVSTIGVGFFMRP------IGGIVIGGIADKVGRRAALTVTIALMTAGTAM 108 Query: 73209 SGIA--------GGSLEFVIYRILGGLAVGAASVMAPAYISEIAPAHLRGRLATIQQVAI 73054 G A G L V+ R+L G + G A AY+ E PA G + Q +I Sbjct: 109 IGFAPTYKDAGLGAPLMIVVARLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASI 168 Query: 73053 ISGLFFSFLNNYILANLAGGSTSELWFGVTAWR--WMFWMELIPAGIFLIALLFIPESPR 72880 + + + + E W WR ++ + L P GI++ + L P P Sbjct: 169 GFAIILASVLAVFIVKCLDEQQIESW----GWRIPFLLGLGLGPVGIYIRSRLNDPGFP- 223 Query: 72879 YLVSARRDERAERVLHMIYNESDAKERLAQIRDSLSEQRKPRFSDLINPKTGKVLSLVWV 72700 A ERL + + R L V Sbjct: 224 -----------------------ADERLGECAPVVEVVRSFSREAL-------------V 247 Query: 72699 GIGLAVFQQLVGINVVFYYGAVLWQAVGFSEGDALLINVISGAVSIAACLGAIALIDRIG 72520 G GL VF + ++FY + + + ++ ++ + L D G Sbjct: 248 GFGLVVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLFG 307 Query: 72519 RKPLLWGGSLGMAVTLAILVYAFSTAEMVDGSLQLSDSNGVLALIAANAYVFFFNSSWGP 72340 R+ L G+L +A+ A ++A A G L V L+ A S GP Sbjct: 308 RRWFL-AGALLVAIVAAYPLFAMLNA--APGLKTLLVFQVVFGLVIA--------SYEGP 356 Query: 72339 VMWVMLGEMFPNQVRGSGLAIA---GLFQWVANFAITMTFPIMLASIGLTGAYGFYAICA 72169 ++ L +MFP+ V +G++I+ + + A +T+ I L A FY I A Sbjct: 357 IL-AALSDMFPDGVLSTGISISYNLAVITFGGFSAAIITWAIATTHNNLAPA--FYVIAA 413 Query: 72168 VI 72163 I Sbjct: 414 AI 415 >ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase Length = 327 Score = 48.5 bits (114), Expect = 2e-04 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 3/148 (2%) Frame = -1 Query: 34997 VSVIIPMHGRSHFIEAALRSVIAQTHPRV--ETILVDDNGEGSANQLATHEQVAPFLGPS 34824 VSVI+P + + SV+ QT E I++DD+ + L ++ Sbjct: 4 VSVIMPTFNNGEKLHRTISSVLNQTMKSTDYELIIIDDHSNDNGETLNVIKKYKGL---- 59 Query: 34823 IRYSANPANVG-VSATRNRGVELARGEYVTFLDDDDLYYEHKVAHQLQHMLDHKLDISIC 34647 +R+ N G S RN G+++++ EYV FLD DDL +E + + ++ D+ I Sbjct: 60 VRFKQLKKNSGNASVPRNTGLKMSKAEYVFFLDSDDLLHERALEDLYNYGKENNSDLIIG 119 Query: 34646 SFDRFDTDGETQPPSAIQPPLTCAQDVL 34563 + + G + P + + D++ Sbjct: 120 KYG-VEGKGRSVPKAIFEKGNVAKADII 146 Score = 40.4 bits (93), Expect = 0.046 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%) Frame = +1 Query: 23065 VSVILPFYKAGKWAGSIAKSI--DIQKEVEVEIFVIDDGLGEGLDSL--VKELRKLEIPY 23232 VSVI+P + G+ S+ K + E+ +IDD + ++L +K+ + L Sbjct: 4 VSVIMPTFNNGEKLHRTISSVLNQTMKSTDYELIIIDDHSNDNGETLNVIKKYKGLVRFK 63 Query: 23233 NVISTSGHCGPGYSRNLGLEKSQGRYVAFLDADD 23334 + SG+ RN GL+ S+ YV FLD+DD Sbjct: 64 QLKKNSGNAS--VPRNTGLKMSKAEYVFFLDSDD 95 >ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase Length = 320 Score = 44.3 bits (103), Expect = 0.003 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 1/161 (0%) Frame = +3 Query: 106923 ILITGMAGFIGHAVAKRLAAEGHDIVGIDNLNDYYDVSLKQARLDDLAAWPNVRFERLDL 107102 ILITG GFIG + KRL +V + N + + + + D AA + +DL Sbjct: 2 ILITGCTGFIGSQLLKRL--NNDKVVCVANKDHFSN------NIVDSAA----EYVFVDL 49 Query: 107103 ADRAGMERLFADTRFERVIHLAAQAGVRYSLDNPHVYAQSNLVGHLNVLEGCRHQQVPHL 107282 DR + L + + VI+LA++ VR S Y ++ + + + + P L Sbjct: 50 TDREKVRDLLRKVKPDLVINLASKTPVRLS------YEDTSFMNNAIIAYNIAMAEAP-L 102 Query: 107283 IYASSSSVYGQNAQVPFSTADAVDH-PISLYAATKKANELM 107402 I+AS++ VY + + V P S YA +K A+E++ Sbjct: 103 IHASTAEVYPYTPYPHYYKEEEVYRTPTSPYAVSKIASEML 143 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 42.0 bits (97), Expect = 0.016 Identities = 34/100 (34%), Positives = 42/100 (42%), Gaps = 11/100 (11%) Frame = +3 Query: 108765 QGRAGTGAHRRRD------RLPCRATRS-GRRRQPASEGHPVRQALASLRRRSGRQDHRA 108923 Q R G G HRRR R+ RA G R+P HP RRR+GR+ R Sbjct: 173 QPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRRHRRR 232 Query: 108924 LGAGLQAQHRRHARGPESRLDGSAVGMRRPG----AGLRP 109031 A L+ +HRRH P + G+ A LRP Sbjct: 233 --ASLRPRHRRHRSTPPMNTPLTLAGLALTAVILWANLRP 270 >ref|NP_047971.2|gp26 Length = 174 Score = 39.7 bits (91), Expect = 0.078 Identities = 18/44 (40%), Positives = 26/44 (59%) Frame = +3 Query: 84690 IRDGEFPPGSLLPPERDLAQQLGVSRASVREALIALEVVGIVEV 84821 I G + PG LP ER + + LG+ R ++R+ L L GI+EV Sbjct: 34 IATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGILEV 77 >ref|NP_817695.1|gp17 Length = 553 Score = 38.5 bits (88), Expect = 0.17 Identities = 36/100 (36%), Positives = 44/100 (44%) Frame = -3 Query: 91071 RAVHLHRPPDRRGAAVAGLRQRAGVAAHRQPGAPADRGHARRALAEQVRHPGRADAIPAH 90892 R +HL + D+R VA R + HR P + ARR +V A A+PA Sbjct: 400 RGLHLTQRSDQRDTVVA---DRLHLHRHRLYWHPVEP--ARRVPQRRVFRVPDAAALPAP 454 Query: 90891 RRLLHGPDAGHGHSGALDDPGGGQARHRPGLLRRHDVVHP 90772 R HGPDA H G DPG R + RH V HP Sbjct: 455 LR--HGPDAPQ-HRGHGADPGAPVQRRGHLHIPRHPVRHP 491 >ref|NP_859265.1|hypothetical protein Length = 645 Score = 38.1 bits (87), Expect = 0.23 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 3/100 (3%) Frame = +1 Query: 70318 ATVKQTADYAHQARDMSQQVGQRARDAGDVGERTQRAMQEIRESSDKISTIVEAIDAIAF 70497 A+ K +D A A + + GQ+A DA + R A ESS + +A A A Sbjct: 143 ASAKSASDSAKTATSRAAEAGQKATDATEAATRAVTAAGNAEESSTRAGESEKAAGADAE 202 Query: 70498 QTNLLALNASVEAARAGE---HGRGFAVVADEVRRLASRS 70608 + A A + AGE V A+E RR+A + Sbjct: 203 KARQHAEKARLAQESAGEILKRAEAATVSAEEARRMAENA 242 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 38.1 bits (87), Expect = 0.23 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 3/100 (3%) Frame = +1 Query: 70318 ATVKQTADYAHQARDMSQQVGQRARDAGDVGERTQRAMQEIRESSDKISTIVEAIDAIAF 70497 A+ K +D A A + + GQ+A DA + R A ESS + +A A A Sbjct: 143 ASAKSASDSAKTATSRAAEAGQKATDATEAATRAVTAAGNAEESSTRAGESEKAAGADAE 202 Query: 70498 QTNLLALNASVEAARAGE---HGRGFAVVADEVRRLASRS 70608 + A A + AGE V A+E RR+A + Sbjct: 203 KARQHAEKARLAQESAGEILKRAEAATVSAEEARRMAENA 242 >ref|NP_859099.1|hypothetical protein Length = 645 Score = 38.1 bits (87), Expect = 0.23 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 3/100 (3%) Frame = +1 Query: 70318 ATVKQTADYAHQARDMSQQVGQRARDAGDVGERTQRAMQEIRESSDKISTIVEAIDAIAF 70497 A+ K +D A A + + GQ+A DA + R A ESS + +A A A Sbjct: 143 ASAKSASDSAKTATSRAAEAGQKATDATEAATRAVTAAGNAEESSTRAGESEKAAGADAE 202 Query: 70498 QTNLLALNASVEAARAGE---HGRGFAVVADEVRRLASRS 70608 + A A + AGE V A+E RR+A + Sbjct: 203 KARQHAEKARLAQESAGEILKRAEAATVSAEEARRMAENA 242 >ref|NP_038301.1|ORF1 Length = 67 Score = 38.1 bits (87), Expect = 0.23 Identities = 17/47 (36%), Positives = 32/47 (68%) Frame = +3 Query: 7707 VKAIRAQLNVSQTEFAKAMGTSVDTIKSWESRRRNPTGLAAKVLTTI 7847 +K +RA+ N++Q EFAK++GT+ T+ +WE +N ++ K ++ I Sbjct: 10 IKELRARHNLTQEEFAKSVGTTPQTVSAWE---KNVLSISPKNMSNI 53 >ref|NP_050557.1|hypothetical protein Length = 645 Score = 38.1 bits (87), Expect = 0.23 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 3/100 (3%) Frame = +1 Query: 70318 ATVKQTADYAHQARDMSQQVGQRARDAGDVGERTQRAMQEIRESSDKISTIVEAIDAIAF 70497 A+ K +D A A + + GQ+A DA + R A ESS + +A A A Sbjct: 143 ASAKSASDSAKTATSRAAEAGQKATDATEAATRAVTAAGNAEESSTRAGESEKAAGADAE 202 Query: 70498 QTNLLALNASVEAARAGE---HGRGFAVVADEVRRLASRS 70608 + A A + AGE V A+E RR+A + Sbjct: 203 KARQHAEKARLAQESAGEILKRAEAATVSAEEARRMAENA 242 >ref|NP_049519.1|putative tail fiber protein Length = 645 Score = 38.1 bits (87), Expect = 0.23 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 3/100 (3%) Frame = +1 Query: 70318 ATVKQTADYAHQARDMSQQVGQRARDAGDVGERTQRAMQEIRESSDKISTIVEAIDAIAF 70497 A+ K +D A A + + GQ+A DA + R A ESS + +A A A Sbjct: 143 ASAKSASDSAKTATSRAAEAGQKATDATEAATRAVTAAGNAEESSTRAGESEKAAGADAE 202 Query: 70498 QTNLLALNASVEAARAGE---HGRGFAVVADEVRRLASRS 70608 + A A + AGE V A+E RR+A + Sbjct: 203 KARQHAEKARLAQESAGEILKRAEAATVSAEEARRMAENA 242 >ref|YP_024895.1|putative membrane protein Length = 93 Score = 37.4 bits (85), Expect = 0.39 Identities = 19/52 (36%), Positives = 33/52 (63%) Frame = +1 Query: 139939 ESVILEAAERIFARHGYRGASVQAIAEAAGLPKSNVLYYVGSKRELYVSLLE 140094 +++IL+AA ++ + G++ A+ AIAEAAG+ V Y G + EL +L + Sbjct: 7 KALILDAAYKLVKKQGFKKATRTAIAEAAGVTAGLVGVYFGKRAELRTTLFK 58 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 676,306,093 Number of Sequences: 14420 Number of extensions: 13966787 Number of successful extensions: 50556 Number of sequences better than 0.5: 15 Number of HSP's better than 0.5 without gapping: 10722 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 50424 length of database: 3,019,461 effective HSP length: 123 effective length of database: 1,245,801 effective search space used: 60756468969 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig65 (134,735 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_899291.1|Sir2 115 1e-24 ref|NP_899269.1|deoxyuridine 5'-triphosphate nucleotidohydrolase 97 4e-19 ref|NP_943888.1|hypothetical protein 94 2e-18 ref|YP_006930.1|putative Sir2-like protein 93 5e-18 ref|YP_006959.1|putative deoxyUTP pyrophosphatase 84 4e-15 ref|NP_076719.1|dUTPase 63 6e-09 ref|NP_108702.1|dUTPase 62 1e-08 ref|NP_996693.1|dUTPase 62 1e-08 ref|NP_076600.1|dUTPase 62 1e-08 ref|NP_112684.1|DUT 62 2e-08 ref|NP_695048.1|dUTPase 62 2e-08 ref|NP_663658.1|putative dUTPase 60 4e-08 ref|NP_046572.1|ABC transporter 60 4e-08 ref|NP_058491.1|dUTPase 60 7e-08 ref|NP_076663.1|dUTPase 60 7e-08 ref|NP_075491.1|phi PVL ORF 53 analogue 58 2e-07 ref|NP_803278.1|dUTPase 57 4e-07 ref|NP_803328.1|dUTPase 55 2e-06 ref|NP_958659.1|77ORF021 55 2e-06 ref|NP_945089.1|gp58 53 8e-06 ref|NP_046564.1|unknown 51 3e-05 ref|NP_817472.1|gp22 42 0.011 ref|NP_958267.1|hypothetical protein 42 0.014 ref|YP_164066.1|small terminase subunit 41 0.032 ref|NP_046717.1|putative dUTPase 40 0.042 ref|NP_665986.1|unknown 39 0.16 ref|NP_116545.1|putative dUTPase 38 0.21 ref|NP_705685.1|gp62 38 0.27 ref|NP_777319.1|replication protein 38 0.27 ref|NP_064745.1|gp7 37 0.35 ref|NP_665928.1|unknown 37 0.46 >ref|NP_899291.1|Sir2 Length = 246 Score = 115 bits (287), Expect = 1e-24 Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 6/200 (3%) Frame = -3 Query: 35502 LVVLTGAGISAESGLKTFRDGDGLWENHRVQDVATPEAFARDPETVLRFYDARREQTRQA 35323 + + +GAG+ AESG+ TFRD +GLWENH + V F + E +FY+ RR Q Sbjct: 3 IFIFSGAGLDAESGISTFRDANGLWENHDIMQVCNINTFLNNYELTHKFYNQRRVQLADV 62 Query: 35322 TPNAAHRALAELEQAGFQVSVITQNIDDLHERAGSRDVLHLHGE---ILMSRSSADPNLR 35152 PNAAH +AEL + + V T N+ DL ERAG +DV H+HGE I+ +S D + Sbjct: 63 HPNAAHYKIAELCEK-YDVDNYTANVSDLLERAGCKDVKHIHGELTKIVQDYTSKDSTV- 120 Query: 35151 YPVGRKGIRLGDLCDKGSQLRPDVVWFGEPVPRYAQ---ACEIVAEADLVLVVGTSLAVM 34981 +G L G + +P VV+F E P Y Q + + +D+ +VVG++L + Sbjct: 121 IDIGYNEYEL----RTGRRDKPGVVFFNEGAPMYTQFWGDIDTLLPSDIAIVVGSTLEIN 176 Query: 34980 PAAMLLDQAPIEAPCLLVDP 34921 P + D A +L++P Sbjct: 177 P--IHWDLAKTGCKFILINP 194 >ref|NP_899269.1|deoxyuridine 5'-triphosphate nucleotidohydrolase Length = 165 Score = 97.1 bits (240), Expect = 4e-19 Identities = 53/133 (39%), Positives = 80/133 (60%), Gaps = 11/133 (8%) Frame = +3 Query: 131613 AGLDLRALLDGPLTLAPGDCELVRTGLAVHIG---------DPGLAGMILPRSGLGHKHG 131765 AG+DLRA ++ + L PGD ++ +G+ +HIG D G+ G I PRSGLG KH Sbjct: 31 AGIDLRAAIEESIELQPGDSVVIPSGVKIHIGSHPLHQQYTDLGVYGAIAPRSGLGFKHF 90 Query: 131766 IVLGNLVGLIDSDYQGELMVSVWNRGRDAFVLEPGERLAQYVLVPVVQ-ATLDIVEDF-A 131939 + L N +G+ID++YQGE+M+ + N G D +E G+R+ Q + V+ + V+ F Sbjct: 91 LRLANTIGIIDANYQGEIMIKIRNEGDDVLHIERGDRICQLIFHTYVKNVQFEEVDTFDE 150 Query: 131940 VSERAAGGFGHSG 131978 ++R A GFG SG Sbjct: 151 ETDRGARGFGGSG 163 >ref|NP_943888.1|hypothetical protein Length = 161 Score = 94.4 bits (233), Expect = 2e-18 Identities = 57/145 (39%), Positives = 82/145 (56%), Gaps = 11/145 (7%) Frame = +3 Query: 131577 DFPLPSYATAGSAGLDLRALLDGPLTLAPGDCELVRTGLAVHIG---------DPGLAGM 131729 ++ LP++ +A +AG+DLRA + + L PG+ ++ +GL + IG D G+ G Sbjct: 15 EWELPAFKSAEAAGIDLRAAIAETVVLKPGEDIVIPSGLKMDIGALQLASVFLDIGVYGC 74 Query: 131730 ILPRSGLGHKHGIVLGNLVGLIDSDYQGELMVSVWNRGRDAFVLEPGERLAQYVLVPVVQ 131909 ILPRSGLG KH + L N G+IDSDY GE+M+ + N G + PG+R+ Q V V+ Sbjct: 75 ILPRSGLGFKHYVRLANTAGVIDSDYHGEIMIKLRNEGTGDLTIVPGDRVVQMVFHLYVK 134 Query: 131910 A-TLDIVEDF-AVSERAAGGFGHSG 131978 VE F +ER G G SG Sbjct: 135 GFGFKEVESFDRNTERGESGIGSSG 159 >ref|YP_006930.1|putative Sir2-like protein Length = 272 Score = 93.2 bits (230), Expect = 5e-18 Identities = 64/189 (33%), Positives = 103/189 (54%), Gaps = 15/189 (7%) Frame = -3 Query: 35502 LVVLTGAGISAESGLKTFR----DGDGLWENHRVQDVATPEAFARD-PETVLRFYDARRE 35338 L++++GAG+S ESG++ FR G LW+++ +++V AF + FY+ RRE Sbjct: 4 LIIISGAGLSVESGVRAFRTDTASGKALWDDYDLEEVCNIHAFRGNFYHKTHMFYNKRRE 63 Query: 35337 QTRQATPNAAHRALAE-LEQAGFQVSVITQNIDDLHERAG--SRDVLHLHG---EILMSR 35176 + + PN AH + E ++ QV +T N+DDL ERAG D+LH+HG E++++ Sbjct: 64 ELKTVEPNLAHLRIGEWYKKYPGQVVNLTTNVDDLIERAGVPHSDILHIHGYLKEVVVAD 123 Query: 35175 SSADPNLR-YPVGRKGIRLGDLCDKGSQLRPDVVWFGEPVPRYAQACEI---VAEADLVL 35008 S N R VG I D ++P+V++FGE P Y + I + D+++ Sbjct: 124 SYNSSNKRVIDVGYNSIDPDDY----KWVKPNVIFFGEHAPAYTEMYNIFDGITSQDMIV 179 Query: 35007 VVGTSLAVM 34981 VVG S V+ Sbjct: 180 VVGCSNQVI 188 >ref|YP_006959.1|putative deoxyUTP pyrophosphatase Length = 148 Score = 83.6 bits (205), Expect = 4e-15 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 6/137 (4%) Frame = +3 Query: 131586 LPSYATAGSAGLDLRALLD-GPLT----LAPGDCELVRTGLAVHIGDPGLAGMILPRSGL 131750 +P + +AG+DLRA P +APG ++ TG+AV I G G+++PRS L Sbjct: 12 MPKIGSEDAAGMDLRAFFGTNPAADLRAIAPGKSLMIDTGVAVEI-PRGWFGLVVPRSSL 70 Query: 131751 GHKHGIVLGNLVGLIDSDYQGELMVSVWNRGRDAFVLEPGERLAQYVLVPVVQA-TLDIV 131927 G +H +++ N G+IDSDY+G + ++++N G + LE ERL Q V++P IV Sbjct: 71 GKRH-LMIANTAGVIDSDYRGTIKMNLYNYGSEMQTLENFERLCQLVVLPHYSTHNFKIV 129 Query: 131928 EDFAVSERAAGGFGHSG 131978 ++ + R GGFG SG Sbjct: 130 DELEETIRGEGGFGSSG 146 >ref|NP_076719.1|dUTPase Length = 139 Score = 63.2 bits (152), Expect = 6e-09 Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 1/143 (0%) Frame = +3 Query: 131553 KILDERVRDFPLPSYATAGSAGLDLRALLDGPLTLAPGDCELVRTGLAVHIGDPGLAGMI 131732 K LDE +P AT SAG D+ A +T+ P + ++V TGLAV +GD + + Sbjct: 6 KKLDENAT---IPERATEHSAGYDISA--SETVTIQPDEIKMVSTGLAVQLGDDEVL-KL 59 Query: 131733 LPRSGLGHKHGIVLGNLVGLIDSDYQGELMVSVW-NRGRDAFVLEPGERLAQYVLVPVVQ 131909 RS K GI L N VG+IDSDY + ++ N ++ + G+R+ Q V V + Sbjct: 60 YDRSSNPVKRGIALINSVGIIDSDYYPQEFKGLFMNISKEPVTISKGQRIMQGVFVKYL- 118 Query: 131910 ATLDIVEDFAVSERAAGGFGHSG 131978 +D + + GGFG +G Sbjct: 119 ----TTDDDNANGKRTGGFGSTG 137 >ref|NP_108702.1|dUTPase Length = 139 Score = 62.4 bits (150), Expect = 1e-08 Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Frame = +3 Query: 131586 LPSYATAGSAGLDLRALLDGPLTLAPGDCELVRTGLAVHIGDPGLAGMILPRSGLGHKHG 131765 +P AT SAG D+ A +T+ P + ++V TGLAV +GD + + RS K G Sbjct: 14 IPERATKHSAGYDISA--SETVTIQPDEIKMVSTGLAVQLGDDEVL-KLYDRSSNPVKRG 70 Query: 131766 IVLGNLVGLIDSDYQGELMVSVW-NRGRDAFVLEPGERLAQYVLVPVVQATLDIVEDFAV 131942 I L N VG+IDSDY + ++ N ++ + G+R+ Q V V + +D Sbjct: 71 IALINSVGIIDSDYYPQEFKGLFMNISKEPVTISKGQRIMQGVFVKYL-----TTDDDNA 125 Query: 131943 SERAAGGFGHSG 131978 + + GGFG +G Sbjct: 126 NGKRTGGFGSTG 137 >ref|NP_996693.1|dUTPase Length = 141 Score = 62.4 bits (150), Expect = 1e-08 Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Frame = +3 Query: 131586 LPSYATAGSAGLDLRALLDGPLTLAPGDCELVRTGLAVHIGDPGLAGMILPRSGLGHKHG 131765 +P AT SAG D+ A +T+ P + ++V TGLAV +GD + + RS K G Sbjct: 14 IPERATEHSAGYDISA--SETVTIQPDEIKMVSTGLAVQLGDDEVL-KLYDRSSNPVKRG 70 Query: 131766 IVLGNLVGLIDSDYQGELMVSVW-NRGRDAFVLEPGERLAQYVLVPVVQATLDIVEDFAV 131942 I L N VG+IDSDY + ++ N ++ + G+R+ Q V V + +D Sbjct: 71 IALINSVGIIDSDYYPQEFKGLFMNISKEPVTISKGQRIMQGVFVKYL-----TTDDDNA 125 Query: 131943 SERAAGGFGHSG 131978 + + GGFG +G Sbjct: 126 NGKRTGGFGSTG 137 >ref|NP_076600.1|dUTPase Length = 139 Score = 62.4 bits (150), Expect = 1e-08 Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 1/143 (0%) Frame = +3 Query: 131553 KILDERVRDFPLPSYATAGSAGLDLRALLDGPLTLAPGDCELVRTGLAVHIGDPGLAGMI 131732 K LDE +P AT SAG D+ A +T+ P + ++V TGLAV +GD + + Sbjct: 6 KKLDENAT---IPERATEHSAGYDISA--SETVTIQPDEIKMVSTGLAVQLGDDEVL-KL 59 Query: 131733 LPRSGLGHKHGIVLGNLVGLIDSDYQGELMVSVW-NRGRDAFVLEPGERLAQYVLVPVVQ 131909 RS K GI L N VG+IDSDY + ++ N ++ + G+R+ Q V V + Sbjct: 60 YDRSSNPVKRGIALINSVGIIDSDYYPQEFKGLFMNISKEPVTISKGQRIMQGVFVKYL- 118 Query: 131910 ATLDIVEDFAVSERAAGGFGHSG 131978 D + + GGFG +G Sbjct: 119 ----TTNDDNANGKRTGGFGSTG 137 >ref|NP_112684.1|DUT Length = 139 Score = 61.6 bits (148), Expect = 2e-08 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 1/132 (0%) Frame = +3 Query: 131586 LPSYATAGSAGLDLRALLDGPLTLAPGDCELVRTGLAVHIGDPGLAGMILPRSGLGHKHG 131765 +P AT SAG D+ A +T+ P + ++V TGLAV +GD + + RS K G Sbjct: 14 IPERATEHSAGYDISA--SETVTIQPDEIKMVSTGLAVQLGDDEVL-KLYDRSSNPVKRG 70 Query: 131766 IVLGNLVGLIDSDYQGELMVSVW-NRGRDAFVLEPGERLAQYVLVPVVQATLDIVEDFAV 131942 I L N VG+IDSDY + ++ N ++ + G+R+ Q V V + D Sbjct: 71 IALINSVGIIDSDYYPQEFKGLFMNISKEPVTISKGQRIMQGVFVKYL-----TTNDDNA 125 Query: 131943 SERAAGGFGHSG 131978 + + GGFG +G Sbjct: 126 NGKRTGGFGSTG 137 >ref|NP_695048.1|dUTPase Length = 139 Score = 61.6 bits (148), Expect = 2e-08 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 1/132 (0%) Frame = +3 Query: 131586 LPSYATAGSAGLDLRALLDGPLTLAPGDCELVRTGLAVHIGDPGLAGMILPRSGLGHKHG 131765 +P AT SAG D+ A +T+ P + ++V TGLAV +GD + + RS K G Sbjct: 14 IPERATEHSAGYDISA--SETVTIQPDEIKMVSTGLAVQLGDDEVL-KLYDRSSNPVKRG 70 Query: 131766 IVLGNLVGLIDSDYQGELMVSVW-NRGRDAFVLEPGERLAQYVLVPVVQATLDIVEDFAV 131942 I L N VG+IDSDY + ++ N ++ + G+R+ Q V V + D Sbjct: 71 IALINSVGIIDSDYYPQEFKGLFMNISKEPVTISKGQRIMQGVFVKYL-----TTNDDNA 125 Query: 131943 SERAAGGFGHSG 131978 + + GGFG +G Sbjct: 126 NGKRTGGFGSTG 137 >ref|NP_663658.1|putative dUTPase Length = 139 Score = 60.5 bits (145), Expect = 4e-08 Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Frame = +3 Query: 131589 PSYATAGSAGLDLRALLDGPLTLAPGDCELVRTGLAVHIGDPGLAGMILPRSGLGHKHGI 131768 P AT SAG D+ + +T+ P + ++V TGLAV +GD + + RS K GI Sbjct: 15 PERATKHSAGYDISS--SETVTIQPDEIKMVSTGLAVQLGDDEVL-KLYDRSSNPVKRGI 71 Query: 131769 VLGNLVGLIDSDYQGELMVSVW-NRGRDAFVLEPGERLAQYVLVPVVQATLDIVEDFAVS 131945 L N VG+IDSDY + ++ N ++ + G+R+ Q V V + +D + Sbjct: 72 ALINSVGIIDSDYYPQEFKGLFMNISKEPVTISKGQRIMQGVFVKYL-----TTDDDNAN 126 Query: 131946 ERAAGGFGHSG 131978 + GGFG +G Sbjct: 127 GKRTGGFGSTG 137 >ref|NP_046572.1|ABC transporter Length = 705 Score = 60.5 bits (145), Expect = 4e-08 Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 2/182 (1%) Frame = +2 Query: 93317 VVDDISLTVEQGEFCVLIGPSGCGKSTTLKMINRLITHSEGRILVGGEDVTTLPPELLRR 93496 +V+DI+L +++ + ++IG SG GKST K +++L + I + G D+ +R+ Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 93497 RIGYAIQSTGLFPHWRVAENI--ATVPRLLKWSTSRINARVXXXXXXXXXXXXXXXXKYP 93670 RI Y ++ LF + EN+ + + + I ++ + Sbjct: 558 RIVYIDENPFLF-KGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG 616 Query: 93671 HQLSGGQAQRVGVARALAADPDVLLMDEPFGAVDPLTRDALQVELARVHRQTGKTIVFVT 93850 LS GQ QR+ +ARA+ P VL++DE +DP D ++ +HR I+ +T Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDP---DNTKLIYETLHRM-DCLIILIT 672 Query: 93851 HD 93856 H+ Sbjct: 673 HN 674 >ref|NP_058491.1|dUTPase Length = 175 Score = 59.7 bits (143), Expect = 7e-08 Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 27/172 (15%) Frame = +3 Query: 131544 LSVKILDERVRDFPLPSYATAGSAGLDLRALLDGPLTLAPGDCELVRTGLAVHIGDPGLA 131723 L VK+L E R +P AG D+ + + L P + +++T +AV I + G Sbjct: 11 LQVKLLSENAR---MPERNHKTDAGYDIFSA--ETVVLEPQEKAVIKTDVAVSIPE-GYV 64 Query: 131724 GMILPRSGLGHKHGIVLGNLVGLIDSDYQGELMVSVWN---------------------- 131837 G++ RSG+ K +V+ G ID+ Y G L +++ N Sbjct: 65 GLLTSRSGVSSKTHLVIET--GKIDAGYHGNLGINIKNDAIASNGYITPGVFDIKGEIDL 122 Query: 131838 ----RGRDAFVLEPGERLAQYVLVPVVQATLDIVEDF-AVSERAAGGFGHSG 131978 R + + G++LAQ V+VP+ L VE+F VSER A GFG SG Sbjct: 123 SDAIRQYGTYQINEGDKLAQLVIVPIWTPELKQVEEFECVSERGAKGFGSSG 174 >ref|NP_076663.1|dUTPase Length = 139 Score = 59.7 bits (143), Expect = 7e-08 Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 1/132 (0%) Frame = +3 Query: 131586 LPSYATAGSAGLDLRALLDGPLTLAPGDCELVRTGLAVHIGDPGLAGMILPRSGLGHKHG 131765 +P AT SAG D+ A +T+ P + ++V TGLAV +G + + RS K G Sbjct: 14 IPERATEHSAGYDISA--SETVTIQPDEIKMVSTGLAVQLGHDEVL-KLYDRSSNPVKRG 70 Query: 131766 IVLGNLVGLIDSDYQGELMVSVW-NRGRDAFVLEPGERLAQYVLVPVVQATLDIVEDFAV 131942 I L N VG+IDSDY + ++ N ++ + G+R+ Q V V + +D Sbjct: 71 IALINSVGIIDSDYYPQEFKGLFMNISKEPVTISKGQRIMQGVFVKYL-----TTDDDNA 125 Query: 131943 SERAAGGFGHSG 131978 + + GGFG +G Sbjct: 126 NGKRTGGFGSTG 137 >ref|NP_075491.1|phi PVL ORF 53 analogue Length = 175 Score = 58.2 bits (139), Expect = 2e-07 Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 33/178 (18%) Frame = +3 Query: 131544 LSVKILDERVRDFPLPSYATAGSAGLDLRALLDGPLTLAPGDCELVRTGLAVHIGDPGLA 131723 L VK+L E R +P AG D+ + + L P + +++T +AV I + G Sbjct: 5 LQVKLLSENAR---MPERNHKTDAGYDIFSA--ETVVLEPQEKAVIKTDVAVSIPE-GYV 58 Query: 131724 GMILPRSGLGHKHGIVLGNLVGLIDSDYQGELMVSVWNRGR------------------- 131846 G++ RSG+ K +V+ G ID+ Y G L +++ N + Sbjct: 59 GLLTSRSGVSSKTHLVIET--GKIDAGYHGNLGINIKNDAQVYLTTNEQCFDIQGEMENS 116 Query: 131847 -------------DAFVLEPGERLAQYVLVPVVQATLDIVEDF-AVSERAAGGFGHSG 131978 D + + G++LAQ V+VP+ L VE+F +VSER A GFG SG Sbjct: 117 FVNNAKKKPFTINDYYEIYKGDKLAQLVIVPIWTPELKQVEEFESVSERGAKGFGSSG 174 >ref|NP_803278.1|dUTPase Length = 169 Score = 57.0 bits (136), Expect = 4e-07 Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 27/172 (15%) Frame = +3 Query: 131544 LSVKILDERVRDFPLPSYATAGSAGLDLRALLDGPLTLAPGDCELVRTGLAVHIGDPGLA 131723 L V++L E R +P AG D+ + + L P + +++T +AV I + G Sbjct: 5 LQVRLLSENAR---MPERNHKTDAGYDIFSA--ETVVLEPQEKAVIKTDVAVSIPE-GYV 58 Query: 131724 GMILPRSGLGHKHGIVLGNLVGLIDSDYQGELMVSVWN---------------------- 131837 G++ RSG+ K +V+ G ID+ Y G L +++ N Sbjct: 59 GLLTSRSGVSSKTHLVIET--GKIDAGYHGNLGINIKNDAIASNGYITPGVFDIKGEIDL 116 Query: 131838 ----RGRDAFVLEPGERLAQYVLVPVVQATLDIVEDF-AVSERAAGGFGHSG 131978 R + + G++LAQ V+VP+ L VE+F +VSER GFG SG Sbjct: 117 SDAIRQYGTYQINEGDKLAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSG 168 >ref|NP_803328.1|dUTPase Length = 186 Score = 55.1 bits (131), Expect = 2e-06 Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 38/183 (20%) Frame = +3 Query: 131544 LSVKILDERVRDFPLPSYATAGSAGLDLRALLDGPLTLAPGDCELVRTGLAVHIGDPGLA 131723 L VK+L + R +P AG D+ + + L P + +++T +AV I + G Sbjct: 11 LQVKLLSKNAR---MPERNHKTDAGYDIFSA--ETVVLEPQEKAVIKTDVAVSIPE-GYV 64 Query: 131724 GMILPRSGLGHKHGIVLGNLVGLIDSDYQGELMVSVWN---------------------- 131837 G++ RSG+ K +V+ G ID+ Y G L +++ N Sbjct: 65 GLLTSRSGVSSKTYLVIET--GKIDAGYHGNLGINIKNDEERDGIPFLYDDIDAELEDGL 122 Query: 131838 --------------RG-RDAFVLEPGERLAQYVLVPVVQATLDIVEDF-AVSERAAGGFG 131969 RG R + + G++LAQ V+VP+ L VE+F +VSER A GFG Sbjct: 123 ISILDIKGNYVQDGRGIRRVYQINKGDKLAQLVIVPIWTPELKQVEEFESVSERGAKGFG 182 Query: 131970 HSG 131978 SG Sbjct: 183 SSG 185 >ref|NP_958659.1|77ORF021 Length = 180 Score = 55.1 bits (131), Expect = 2e-06 Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 38/183 (20%) Frame = +3 Query: 131544 LSVKILDERVRDFPLPSYATAGSAGLDLRALLDGPLTLAPGDCELVRTGLAVHIGDPGLA 131723 L VK+L + R +P AG D+ + + L P + +++T +AV I + G Sbjct: 5 LQVKLLSKNAR---MPERNHKTDAGYDIFSA--ETVVLEPQEKAVIKTDVAVSIPE-GYV 58 Query: 131724 GMILPRSGLGHKHGIVLGNLVGLIDSDYQGELMVSVWN---------------------- 131837 G++ RSG+ K +V+ G ID+ Y G L +++ N Sbjct: 59 GLLTSRSGVSSKTYLVIET--GKIDAGYHGNLGINIKNDEERDGIPFLYDDIDAELEDGL 116 Query: 131838 --------------RG-RDAFVLEPGERLAQYVLVPVVQATLDIVEDF-AVSERAAGGFG 131969 RG R + + G++LAQ V+VP+ L VE+F +VSER A GFG Sbjct: 117 ISILDIKGNYVQDGRGIRRVYQINKGDKLAQLVIVPIWTPELKQVEEFESVSERGAKGFG 176 Query: 131970 HSG 131978 SG Sbjct: 177 SSG 179 >ref|NP_945089.1|gp58 Length = 297 Score = 52.8 bits (125), Expect = 8e-06 Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 4/156 (2%) Frame = -1 Query: 23858 FVTVADSGGFTAAARYLHKTQSTISLRISTLESRLGTLLIERGSRRLTLTGDGETFLVYA 23679 F A G FT AA L+ Q +S ++ LE+ LGT L R ++ L LT G+ + Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRV 74 Query: 23678 RRLLQLQREAIAALGRSQ-PVTLRFGIPEDYADTWLPALLERFGARHPDVHVHIHCRMST 23502 +L EA A + + Q P +L A +L + F A HP+V V I R Sbjct: 75 HAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILVR--- 131 Query: 23501 ELLEQLEKGSLDI-VLAVQHAADSG--GRPVATEDV 23403 E + L DI V ++ G G + EDV Sbjct: 132 EGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDV 167 >ref|NP_046564.1|unknown Length = 177 Score = 50.8 bits (120), Expect = 3e-05 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 2/98 (2%) Frame = -2 Query: 41779 FDVTNKIGGIGYWLS--QAYTGKGIMTSSVKALIGTGFQEYGLNRIEVACATDNGSSRAI 41606 FD K G GY+L+ + Y GKG + ++ F E ++ + N S + Sbjct: 78 FDCDRKNGTFGYYLAVFEPYRGKGFAKEMILMVLRFFFLELAYQKVNTTVYSFNNPSIRL 137 Query: 41605 PERLGFTLEGVLREREYLYGRYVDHAIYSMLASEFSLD 41492 E+LGF EG LR+ + G Y D + M EF L+ Sbjct: 138 HEKLGFMKEGQLRKIIFTKGAYYDGICFGMTREEFELN 175 >ref|NP_817472.1|gp22 Length = 1576 Score = 42.4 bits (98), Expect = 0.011 Identities = 44/142 (30%), Positives = 52/142 (36%), Gaps = 8/142 (5%) Frame = +3 Query: 94347 DATSGAAQRAADRSRR---IAGDAGRGHGAVGALVP-----RLVSRPEPGHVRARELPQP 94502 DAT A R RR I AG G G G P ++ P P + LP Sbjct: 1313 DATGQYGSGNASRQRRGLPIVPPAGMGIGIPGIGAPGQAPGQVGPFPTPNGINGPTLPGG 1372 Query: 94503 DAGPCGAGPGVLAHFGERGRRRGSVRHAPGGARVRSAGLDAGGHRPDVSPGSGTRHRRAP 94682 P GA PGV + S PG AR +S+ GG +P S G G P Sbjct: 1373 PGAPPGAPPGVPGGQTPKPPPGASGAATPGAARPQSS---TGGQQPSGSSGGGGGLGFTP 1429 Query: 94683 GGFRLRAHAGGAGPLRAVARGA 94748 GG A A A A G+ Sbjct: 1430 GGAIDMAGQAAAAAANAFAPGS 1451 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 42.0 bits (97), Expect = 0.014 Identities = 58/194 (29%), Positives = 66/194 (34%), Gaps = 11/194 (5%) Frame = +3 Query: 57834 QRAHARGTAAQRAGTPHRVLGLHARPARCRQRP--AHRSAVDGQACPGALSPRTGPALVS 58007 +RA +R A R P R C P A A G A +P PAL Sbjct: 59 RRAPSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRP 118 Query: 58008 HAAR--------QLRAPGGRLAGLALDPSAADPGPGHRQRGCLRQARTSRPRRASGTRPA 58163 A + RAP R + L P A P +R R+ R RR Sbjct: 119 RAPECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPRRRVQPRLGV 178 Query: 58164 GLHPLSTWRVPGRHGAGDHSPAPPPGCPRDARRRPGDASRPGGERAGTARPRAR-GLSAF 58340 G+H R GR P PG R RRRP P RA RPR R G Sbjct: 179 GVHRRRGARRVGRRVR--VRARPGPGAARRPRRRP----HPEHPRA--VRPRRRTGRRHR 230 Query: 58341 RRAPSETSQARHTS 58382 RRA RH S Sbjct: 231 RRASLRPRHRRHRS 244 Score = 37.7 bits (86), Expect = 0.27 Identities = 48/177 (27%), Positives = 57/177 (32%), Gaps = 20/177 (11%) Frame = +3 Query: 94341 PHDATSGAAQRAADRSRRIAGDAGRGHGAVGALVPRLVSRPEPGHVRARELPQPDAGP-- 94514 PH T RA R+ R R H +G R PEP H R +P AGP Sbjct: 14 PHTRTPAPRTRAHPRAHRRVRT--RPHPHLGPARDRSPDHPEPDHPCRRAPSRPAAGPRR 71 Query: 94515 ---------------CGAGPGVLAHFGERG---RRRGSVRHAPGGARVRSAGLDAGGHRP 94640 C PG H G + +AP R R+ D G H Sbjct: 72 HPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAP-ALRPRAPECDRGAHH- 129 Query: 94641 DVSPGSGTRHRRAPGGFRLRAHAGGAGPLRAVARGAEHRCRSGHGAAPNPRSGTRQR 94811 RAP R R A GP V E R R+ P+PR + R Sbjct: 130 --------LRTRAP---RTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPRRRVQPR 175 >ref|YP_164066.1|small terminase subunit Length = 193 Score = 40.8 bits (94), Expect = 0.032 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 10/102 (9%) Frame = -1 Query: 55253 YFEDVLSHGEAFAEKCIEGLLMTFFNQGEVCTCPSRALVHESIYDEFMARAI-------E 55095 Y E L+ G ++ I L F +Q E PSRA VH Y + + R + E Sbjct: 20 YIEGRLADGRMTLDELIADLQAQFPSQAEAGELPSRAAVHR--YGQKLERRLAAIRASTE 77 Query: 55094 RAKTIR--QGNPLDTETQ-IGAQVSKEQFDKILSYMDIGREE 54978 AK IR G+ LD ++ + A + E F+ I+S + G EE Sbjct: 78 AAKLIRAQAGDDLDARSEALTAMIQSELFESIISLQEAGDEE 119 >ref|NP_046717.1|putative dUTPase Length = 142 Score = 40.4 bits (93), Expect = 0.042 Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Frame = +3 Query: 131619 LDLRALLDGPLTLAPGDCELVRTGLAVHIGDPGLAGMILPRSGLGHKHGIVLGNLVGLID 131798 +DLRA D + + + +LV G+A+ + + G ++PRS G++ N +G+ID Sbjct: 24 IDLRAAED--VAIKKDEFKLVPLGVAMELPE-GYEAHVVPRSSTYKNFGVIQTNSMGVID 80 Query: 131799 SDYQGELMVSVWNRGRDAF---VLEPGERLAQYVLVPVVQATLDIVEDFAVSERAAGGFG 131969 Y+G+ W A ++ G+R+ Q+ ++ + A +D++E + GG G Sbjct: 81 ESYKGD--NDFWFFPAYALRDTKIKKGDRICQFRIMKKMPA-VDLIEVDRLGNGDRGGHG 137 Query: 131970 HSG 131978 +G Sbjct: 138 STG 140 >ref|NP_665986.1|unknown Length = 213 Score = 38.5 bits (88), Expect = 0.16 Identities = 29/92 (31%), Positives = 43/92 (46%) Frame = +2 Query: 7799 TTRSQRRCHDVNASRSGVLTTSPTSSGREASVTSA*LTRAKLSTTIASPAGALVRRRVAS 7978 TT RR ++ + S SPT+S R +S S TR + + IAS RR Sbjct: 9 TTTRSRRSSALSTTGSSSRRRSPTTSSRASSSRSRTTTRRRSPSPIASRRRTSARRWSGR 68 Query: 7979 SSGSLTRAGAACRASSVPGVTSSERPRSSATR 8074 S+G +G++ R + V +TS E R + R Sbjct: 69 SAGITVTSGSSTRWTPVIPMTSEELNRLAFER 100 >ref|NP_116545.1|putative dUTPase Length = 115 Score = 38.1 bits (87), Expect = 0.21 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Frame = +3 Query: 131757 KHGIVLGNLVGLIDSDYQGELMVSVW-NRGRDAFVLEPGERLAQYVLVPVVQATLDIVED 131933 K GI L N VG+IDSDY + ++ N ++ + G+R+ Q V V + +D Sbjct: 44 KRGIALINSVGIIDSDYYPQEFKGLFMNISKEPVTISKGQRIMQGVFVKYL-----TTDD 98 Query: 131934 FAVSERAAGGFGHSG 131978 + + GGFG +G Sbjct: 99 DNANGKRTGGFGSTG 113 >ref|NP_705685.1|gp62 Length = 655 Score = 37.7 bits (86), Expect = 0.27 Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 2/147 (1%) Frame = -2 Query: 61975 RGTGQGGDVHHAGGLETLDIAQRVAQHHPSFGVGVEDLDVEPLECL-DDVAGLDGAAVGH 61799 R T +G AGG +TL+ A+ P G D + CL D A L VG Sbjct: 316 RSTARG-----AGGAQTLNTAR------PRPGKKTADCEAILDACLRGDRAYLSSPEVGP 364 Query: 61798 VLGTCYHAD-DIDPGLEPEHRLHGAEDAGGAAHVELHLVHAGPRLERDAAGVEGDALADQ 61622 +L A + +P H L GA+ +G A V L + P+LE G++G LA Sbjct: 365 ILAALADAQRQLFRATKPGHVLVGADLSGIEARVAPWLANDVPKLEAFEKGIDGYKLAAM 424 Query: 61621 DVRRFFRVLGAAIFHDDQPRGLRAALA 61541 D+ + + A+ D + G A LA Sbjct: 425 DI---YSIEYDAVTKDQRQVGKAADLA 448 >ref|NP_777319.1|replication protein Length = 202 Score = 37.7 bits (86), Expect = 0.27 Identities = 20/49 (40%), Positives = 24/49 (48%) Frame = -2 Query: 4894 PSWRPVGAEPMSPCRSRRTPSGWRTCSASALAARAPSTRWCGGGTVAPM 4748 P+W P+G +PM C S R P WR+ PS RW GG T M Sbjct: 137 PAWTPLG-KPMCFCPSGRWPRPWRS----------PSARWSGGSTTPAM 174 >ref|NP_064745.1|gp7 Length = 540 Score = 37.4 bits (85), Expect = 0.35 Identities = 38/184 (20%), Positives = 71/184 (38%), Gaps = 1/184 (0%) Frame = +1 Query: 105514 NARRGKASSQRARSGVGMAAASSTNRVGGARRSTSGALKASIT-ASGARKRTSHARDASV 105690 +A AS A + +A S+TN A ++ + A A+++ + A T+ A A+ Sbjct: 118 SATNAGASETAASASATASATSATNSATSASQAATSASAAAVSEGNAATSETNAANSATS 177 Query: 105691 T*KRPSARCPCGNKAANRANSGSTEARRGAVTHSSVSPACKRRAAAMPSAADLPRPRSAL 105870 S + A+ A + +T A A +S + A +AAA S + S + Sbjct: 178 ASGSASTATTQASAASVSATNAATSASNAA---TSATNAAASQAAAATSETNAAASESTV 234 Query: 105871 NTTGXXXXXXXXXCTAAAWSAVTQAVSSGRGGDASLEGNRPGRGIRRSAGQHQTPASRCS 106050 T+ +A +A TQA ++ + +A + A+ + Sbjct: 235 TTSATNAATSEANAATSASTATTQATNAATSASTASTSATNAATSETNAASSASSAASSA 294 Query: 106051 TRAR 106062 T A+ Sbjct: 295 TSAQ 298 >ref|NP_665928.1|unknown Length = 99 Score = 37.0 bits (84), Expect = 0.46 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = -2 Query: 89713 RPSWCARCRATPWSSSTRRRAWRCWTASGSSWPTTTTATCRWGASTNATSVMPARRPTRC 89534 RPS C+R R + R WR A+ SSW TT R + + T+ RR + C Sbjct: 31 RPSGCSRSRTASRRTPRISRRWRRHRATASSWTTTAKLAPRRTLTKSRTTAKSRRRSSGC 90 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 603,283,652 Number of Sequences: 14420 Number of extensions: 12280663 Number of successful extensions: 46610 Number of sequences better than 0.5: 31 Number of HSP's better than 0.5 without gapping: 10506 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 46425 length of database: 3,019,461 effective HSP length: 123 effective length of database: 1,245,801 effective search space used: 55796935188 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig63 (123,672 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_803780.1|ORF214 196 3e-49 ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family 74 2e-12 ref|YP_024488.1|putative glycerophosphoryl diester phosphodieste... 73 7e-12 ref|NP_599074.1|unknown 72 2e-11 ref|YP_024677.1|gp04 67 3e-10 ref|NP_046572.1|ABC transporter 66 7e-10 ref|NP_046569.1|IMPB 64 3e-09 ref|NP_542557.1|deaminase protein deoxycytidine triphosphate-lik... 62 1e-08 ref|YP_077226.1|dUTPase 58 2e-07 ref|NP_690787.1|immunity repressor 52 2e-05 ref|NP_108682.1|cI2009 46 7e-04 ref|NP_996677.1|phage repressor 46 7e-04 ref|NP_899505.1|hypothetical protein 44 0.005 ref|NP_038317.1|ORF16 40 0.039 ref|NP_958298.1|hypothetical protein 40 0.039 ref|NP_958300.1|hypothetical protein 40 0.066 ref|YP_006603.1|Gp23 40 0.066 ref|NP_510904.1|hypothetical protein 40 0.066 ref|NP_049417.1|putative cro-like regulatory protein 39 0.086 ref|NP_835522.1|similar to repressor 39 0.086 ref|NP_803311.1|cI-like repressor 39 0.086 ref|NP_046921.1|gp26 39 0.11 ref|NP_049430.1|Hypothetical protein 37 0.33 ref|NP_569803.1|hypothetical protein 37 0.33 ref|NP_050113.1|Rad protein 37 0.33 ref|YP_024716.1|gp43 37 0.33 ref|NP_076698.1|repressor 37 0.33 ref|NP_700411.1|regulatory protein 37 0.43 >ref|NP_803780.1|ORF214 Length = 189 Score = 196 bits (499), Expect = 3e-49 Identities = 100/188 (53%), Positives = 126/188 (67%), Gaps = 1/188 (0%) Frame = -2 Query: 72290 MSIKSDKWIRRMAE-REGMIEPFEEDQVRYVNERRVISYGTSSYGYDVRCADEFKVFTNI 72114 M+I SDK I +++ RE MI F QVR + +++ISYG SSYGYDVR A FK+F+N+ Sbjct: 1 MAILSDKTITDLSKGREPMITDFIGHQVREKDGKKIISYGLSSYGYDVRLARNFKIFSNV 60 Query: 72113 HSAVVDPKGFDEKSFVDVKGDVCVIPPNSFALARTVEYFRIPRSVLTICLGKSTYARCGI 71934 SAV+DP + VD GD C+IPPNS+ L TVE F IP VL IC GKSTYAR G Sbjct: 61 TSAVIDPLDPSDGFLVDWTGDYCIIPPNSYILGHTVESFNIPDDVLAICTGKSTYARLGA 120 Query: 71933 IVNVTPLEPEWEGHVTLEFSNTTNLPARIYANEGVAQMLFLESDEVCDVSYKDRGGKYMG 71754 IVNVTP+EP ++G V +E +N T LP +IYA+ G+AQ +F D C+VSY R GKY Sbjct: 121 IVNVTPIEPGFKGQVVIEIANCTTLPLKIYADMGIAQFMFFRGDAPCEVSYAKRNGKYQN 180 Query: 71753 QRGVTLPR 71730 Q G+T R Sbjct: 181 QIGITTAR 188 >ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family Length = 92 Score = 74.3 bits (181), Expect = 2e-12 Identities = 38/92 (41%), Positives = 59/92 (64%) Frame = +3 Query: 110823 MTKSELIEQIAIRQPELSAKEVEAAVKIILEDITQSLSSGGRVEIRGFGSFSLHFREPRT 111002 M K+ELI ++A +Q +S KE +V+ + + I+++L SG +V I GFG+F + R R Sbjct: 1 MNKTELIAKVAEKQG-VSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARK 59 Query: 111003 GRNPKTGDPVDLQGKYVPHFKPGKELREQVNA 111098 GRNP+TG+ +D+ P FKP K L++ V A Sbjct: 60 GRNPQTGEEIDIPATKAPAFKPAKALKDAVKA 91 >ref|YP_024488.1|putative glycerophosphoryl diester phosphodiesterase Length = 848 Score = 72.8 bits (177), Expect = 7e-12 Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 17/245 (6%) Frame = +3 Query: 17586 LRDDVRVTAHRGSSIAAPENTLAAMRRAIQEGADYLEIDVRQLRDGNVVLSHDRNLKRLT 17765 + D + HRG++ E+T+ + A+ +GADY+E+D++ +D ++ HD + R T Sbjct: 612 MEKDFMLIGHRGATGYTDEHTIKGYQMALDKGADYIELDLQLTKDNKLLCMHDSTIDRTT 671 Query: 17766 GRDLDITDLTLAETRDIDIGSWFDDAFAD---ERLATLDQVIGLAHGKARLYVELKPAPG 17936 + D+TL S+ F E + +LD V+ K + Y+E K Sbjct: 672 TGTGKVGDMTL---------SYIQTNFTSLNGEPIPSLDDVLNHFGTKVKYYIETKRP-- 720 Query: 17937 NETDLIEAVVERLRHHGIADSAVVASLSPTIIRDVEAYAPDIDTTLFVQF------LLPG 18098 + ++ ++ +L+ G+ + S +I ++++A + + QF L Sbjct: 721 FDANMDRELLTQLKAKGLIG---IGSERFQVI--IQSFARESLINIHNQFSNIPLAYLTS 775 Query: 18099 ALAATPADN--------IGLRHTQANTDVVRLVQNSGRELHVWTVNDPREMSRYIDMGVD 18254 + + D+ I ++T ++V L + G ++H WTVN EM I MGVD Sbjct: 776 TFSESEMDDCLSYGFYAIAPKYTTITKELVDLAHSKGLKVHAWTVNTKEEMQSLIQMGVD 835 Query: 18255 NIITD 18269 T+ Sbjct: 836 GFFTN 840 >ref|NP_599074.1|unknown Length = 108 Score = 71.6 bits (174), Expect = 2e-11 Identities = 34/66 (51%), Positives = 45/66 (68%) Frame = +2 Query: 27488 SLTSRQQHVFDFIVKTMNELGYPPTRAEIARALGFRSPNAAEEHLRALDRKGVIRMIPGT 27667 +LT QQ V D ++ E G+PPT E+A LG+RS NAA EHLRAL++KG+I + G Sbjct: 3 TLTQCQQQVLDMLISYQKERGFPPTNQEVATMLGYRSVNAAVEHLRALEKKGIITIKRGV 62 Query: 27668 SRGIRL 27685 +RGI L Sbjct: 63 ARGITL 68 >ref|YP_024677.1|gp04 Length = 90 Score = 67.4 bits (163), Expect = 3e-10 Identities = 36/90 (40%), Positives = 53/90 (58%) Frame = +3 Query: 110823 MTKSELIEQIAIRQPELSAKEVEAAVKIILEDITQSLSSGGRVEIRGFGSFSLHFREPRT 111002 M KS+LI +A + ++ + A++ +LE IT+SL G V + GFG FS+ R RT Sbjct: 1 MNKSDLINHVAA-ETGMTKTDSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAART 59 Query: 111003 GRNPKTGDPVDLQGKYVPHFKPGKELREQV 111092 GRNP TG+ + + P FK GK L++ V Sbjct: 60 GRNPATGEEIKIPASKAPKFKAGKGLKDAV 89 >ref|NP_046572.1|ABC transporter Length = 705 Score = 66.2 bits (160), Expect = 7e-10 Identities = 60/220 (27%), Positives = 110/220 (50%), Gaps = 7/220 (3%) Frame = +1 Query: 56611 PTAKTSNASTRTKTMIK-LEGVSKTYGAGPTAVHALKNIDLDVPQGAIHGVIGLSGAGKS 56787 P + SN + I+ ++ V+ GA P + +++I+L + + +IG SG GKS Sbjct: 465 PVQQDSNENLTELDFIQNIKTVNLNIGADPMR-YIVEDINLILDRKDKVLIIGESGTGKS 523 Query: 56788 TLIRCVNLLERPTSGRVIVDGQDLTRQDAEALRQSRHQLGMIFQHFN-LLASRTVFDNVA 56964 T + ++ L + + ++G D+ R D ++R+ +++ N L T+ +N+ Sbjct: 524 TFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR-----IVYIDENPFLFKGTIKENLC 578 Query: 56965 LPLELMGVSKSDIRERVEPLLDLTGLTDKARQYP-----AQLSGGQKQRVAIARALASRP 57129 + E+ ++ + + + DK Y + LS GQKQR+A+ARA+ +P Sbjct: 579 MG-EIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQP 637 Query: 57130 KVLLCDEATSALDPQTTASILELLQDINRKLGLTILLITH 57249 +VL+ DE+ S +DP T I E L ++ I+LITH Sbjct: 638 QVLILDESLSNIDPDNTKLIYETL----HRMDCLIILITH 673 Score = 43.1 bits (100), Expect = 0.006 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 14/161 (8%) Frame = -1 Query: 52449 IADMNLTLEPGSFNVLLGRTLAGKTTLMRLMAGLDMPTRGRVLMNGEDVTGR---SVRHR 52279 + D+NL L+ +++G + GK+T + ++ L + +NG D+ S+R R Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 52278 NVSMVYQQFINYPGLTVYENIASPLRLARVGRAELDRRVRSIAEMLHMEPFLDRLPLE-- 52105 V + F+ + G T+ EN+ +G + + M F+ L + Sbjct: 559 IVYIDENPFL-FKG-TIKENLC-------MGEIFDQNEIENACIMSQCHEFICNLDKQYS 609 Query: 52104 ---------LSGGQQQRTAMGRALVKDADVVLFDEPLVNLD 52009 LS GQ+QR A+ RA++ V++ DE L N+D Sbjct: 610 YKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNID 650 Score = 42.4 bits (98), Expect = 0.010 Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 7/163 (4%) Frame = -3 Query: 38770 GDNGSGKTTLMRLLAGL-EVPRQGTVRWSLDDAPAQPPPCPGRLLYLHQQPYLFDTTVAG 38594 G++G+GK+T + L+ L +VP + LD R++Y+ + P+LF T+ Sbjct: 516 GESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKE 575 Query: 38593 NLHY--IARWNGWRGEAMRRRIDEMLERCGLAEH----ARQRARSLSGGEXXXXXXXXXX 38432 NL I N + + E + C L + + +LS G+ Sbjct: 576 NLCMGEIFDQNEIENACIMSQCHEFI--CNLDKQYSYKLSENGSNLSTGQKQRLALARAI 633 Query: 38431 XLSPRVLLLDEPTASLDRQAVRDVAALVGALHASGCAVVLSAH 38303 P+VL+LDE +++D + + LH C ++L H Sbjct: 634 LHQPQVLILDESLSNIDPD---NTKLIYETLHRMDCLIILITH 673 >ref|NP_046569.1|IMPB Length = 416 Score = 64.3 bits (155), Expect = 3e-09 Identities = 66/240 (27%), Positives = 102/240 (42%), Gaps = 11/240 (4%) Frame = +3 Query: 28140 RKILHADCDCFYA---AVEMRDDPALRDVPLAIGGSPEQRGVVATCNYPA--RAFGIHSA 28304 + IL D FYA AV M +P LA+ G+ E++G V PA + FGI + Sbjct: 10 KNILCVDMKSFYASVSAVTMGLNPLT--CYLAVVGNTERQGSVVLAASPALKKDFGIKTG 67 Query: 28305 MPMARAMRLCPHLTRLAPDFPKYREVSARIQALFHELTP--LVEPLSLDEAYLDVSEVTQ 28478 + P + + P + VS I LF+ P V S+DE++LD + Sbjct: 68 SRLFEIPE-DPRIHIVNPQMKLFIRVSTEITKLFYRFVPEKCVHTYSIDESFLDAGKEDP 126 Query: 28479 CQGSATWMARWLKQEALTRTGIVISVGAAPSKFLAKLASDWDKPDGLYVIAXXXXXXXXX 28658 + MA+ ++ G++ +VG + L+KLA D + IA Sbjct: 127 EE-----MAKAIQSSMWREFGLMCTVGIGDNMLLSKLALDLESKKTKSGIARWRYEDVPN 181 Query: 28659 XXXXKR----LHGVGPATAAKLEGLGIVTCRDLRDWPLDTLLERFGKFGRRLFELARGID 28826 R + G+G L +GI T L +PL+ L ++FG G +L+ A GID Sbjct: 182 KLWKVRPLSKMWGIGGRMERNLNRMGISTIGQLAKFPLELLEKKFGIMGNQLYYHAHGID 241 >ref|NP_542557.1|deaminase protein deoxycytidine triphosphate-like protein Length = 182 Score = 62.0 bits (149), Expect = 1e-08 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 4/146 (2%) Frame = -2 Query: 72155 DVRCADEFKVFTNIHSAVVDPKGFDEKSFVDV--KGDVCVIPPNSFALARTVEYFRIPRS 71982 D+ DE K+ + + VVD +E+++ D + + P FALA T E IP Sbjct: 35 DLHIGDELKIPSATGTVVVD----EEETYPDYYERSIEYSLKPGDFALAHTEEMVTIPPD 90 Query: 71981 VLTICLGKSTYARCGIIV-NVTPLEPEWEGHVTLEFSNTTNLPARIYANEGVAQMLFLES 71805 ++ + G+S+ R G+ + N ++P + G +TLE N +N P ++ Q+ E Sbjct: 91 MVGVLHGRSSVGRLGLFIHNAGFIDPGFRGQITLELFNASNHPIQLKEGMRACQLAIHEL 150 Query: 71804 DEVCDVSYKD-RGGKYMGQRGVTLPR 71730 + D +Y D G KY Q G T R Sbjct: 151 KTMPDSAYSDENGNKYSDQTGATPSR 176 >ref|YP_077226.1|dUTPase Length = 172 Score = 57.8 bits (138), Expect = 2e-07 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 2/184 (1%) Frame = -2 Query: 72284 IKSDKWIRRMAEREGM-IEPFEEDQVRYVNERRVISYGTSSYGYDVRCADEFKVFTNIHS 72108 I SD+ ++ E+ + IEP ED +R G D+R +E F + Sbjct: 2 IFSDRDLKYYLEKGWIKIEPLREDTIR-------------ENGVDLRIGNEIVRFKK--N 46 Query: 72107 AVVDPKGFDEKSFVDVK-GDVCVIPPNSFALARTVEYFRIPRSVLTICLGKSTYARCGII 71931 + DP F++ + G+ +I P+ L T EY ++P V+ +ST+AR G+ Sbjct: 47 RIFDPDKDSIDDFIEKEVGNEFIINPHEHVLLVTEEYVKLPNDVMAFVNLRSTFARLGLF 106 Query: 71930 VNVTPLEPEWEGHVTLEFSNTTNLPARIYANEGVAQMLFLESDEVCDVSYKDRGGKYMGQ 71751 + T ++ +EG +T+E + P ++ ++F ++ + Y GKY Q Sbjct: 107 IPPTIVDAGFEGQLTIELVG-SEFPIKLKYGMRFIHLIFAKTLTPVEKPY---NGKYQKQ 162 Query: 71750 RGVT 71739 RGVT Sbjct: 163 RGVT 166 >ref|NP_690787.1|immunity repressor Length = 144 Score = 51.6 bits (122), Expect = 2e-05 Identities = 26/81 (32%), Positives = 51/81 (62%) Frame = +1 Query: 44263 VGARLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSPSVSSLKKILDAMPVSISEFF 44442 VG R+K +RK R L+Q +LA++A ++ S ++ IE++ +PS+S+L+ + A+ + +S Sbjct: 3 VGQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSAIV 62 Query: 44443 AGEETSPQEKFFYRAEELTEI 44505 E +E+ Y ++E +I Sbjct: 63 GEETLIKEEQAEYNSKEEKDI 83 >ref|NP_108682.1|cI2009 Length = 286 Score = 46.2 bits (108), Expect = 7e-04 Identities = 26/60 (43%), Positives = 35/60 (58%) Frame = +1 Query: 44263 VGARLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSPSVSSLKKILDAMPVSISEFF 44442 VG+++K RK LSQ ELAK+ GV +TIS E SP L K+ + V+I +FF Sbjct: 10 VGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAIDDFF 69 >ref|NP_996677.1|phage repressor Length = 286 Score = 46.2 bits (108), Expect = 7e-04 Identities = 26/60 (43%), Positives = 35/60 (58%) Frame = +1 Query: 44263 VGARLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSPSVSSLKKILDAMPVSISEFF 44442 VG+++K RK LSQ ELAK+ GV +TIS E SP L K+ + V+I +FF Sbjct: 10 VGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAIDDFF 69 >ref|NP_899505.1|hypothetical protein Length = 297 Score = 43.5 bits (101), Expect = 0.005 Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 4/196 (2%) Frame = -1 Query: 56085 IQGLQTGASVAHNGCCLSVTHIDGNRVAFDLMRETLRLTNLGALEVGDRVNLERAARVGD 55906 I+ +Q G V ++VT D +R+A+ M ETL L + L R V Sbjct: 53 IKHVQEGTLVKRGEAAVTVTITDHSRIAYGNMIETLLYNELWYSSTVGTI-LHRCLDVLH 111 Query: 55905 EIGGHAMSGHILCQAVLDELDEAPNNRRLWFAVPEVHARFLFEKGYIGVDGISLTIGAVD 55726 E G A S + ++ A + +V AR ++ + + ++ Sbjct: 112 ENGYDARSAY-------PQIGRASSTPEQSAKARDVFARIFYQSSNEKIPVAMHSDILIN 164 Query: 55725 GARFCVD----LIPETLSRTTLGERVLGERVNVEVDPQTQAIVETVERVLASRRSE*TNA 55558 G +C++ ++ +T + + + + V +Q I+ET+ERVLA + A Sbjct: 165 GEEYCMEHYNGIMIDTFDKQACIDLINKKDFRGTVMVDSQPIIETIERVLAETKCFVAQA 224 Query: 55557 RSCALDSWPGIGYHLR 55510 S LD W I H + Sbjct: 225 ESVTLDEWIEIVRHFK 240 >ref|NP_038317.1|ORF16 Length = 183 Score = 40.4 bits (93), Expect = 0.039 Identities = 26/54 (48%), Positives = 32/54 (59%) Frame = +1 Query: 44272 RLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSPSVSSLKKILDAMPVSIS 44433 R+KQLRK R L+Q ELA GVT TI E+ S S L+++ D VSIS Sbjct: 3 RIKQLRKSRKLTQAELADLIGVTKRTIIHWEKYGFS-SADKLQELADCFEVSIS 55 >ref|NP_958298.1|hypothetical protein Length = 393 Score = 40.4 bits (93), Expect = 0.039 Identities = 24/63 (38%), Positives = 38/63 (60%) Frame = +1 Query: 44260 DVGARLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSPSVSSLKKILDAMPVSISEF 44439 ++GAR+ R+ R LSQ ELA A V+ S + IE+ SPS ++L+ + DA+ V ++ Sbjct: 7 ELGARIAARRRARRLSQPELAAVAHVSLSMLRAIERGARSPSDATLEALADALDVDGTQL 66 Query: 44440 FAG 44448 G Sbjct: 67 RTG 69 >ref|NP_958300.1|hypothetical protein Length = 76 Score = 39.7 bits (91), Expect = 0.066 Identities = 22/57 (38%), Positives = 33/57 (57%) Frame = +1 Query: 44263 VGARLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSPSVSSLKKILDAMPVSIS 44433 +GAR++ R L +LSQ ELA AGV + TI +E P + L +I A+ V ++ Sbjct: 16 IGARIRDARILTNLSQLELATLAGVDHKTIHRVEYGLSDPGLGLLLQIAHAVDVPLA 72 >ref|YP_006603.1|Gp23 Length = 127 Score = 39.7 bits (91), Expect = 0.066 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +2 Query: 27752 GSPILAAAHIDRHCPLAPDYFT-PRADYLLRVRGLSMKDAGILDGDLLAVHRTQQIRDGQ 27928 G P AA ++++ L + P A Y +R + AGIL G LL + + DG Sbjct: 2 GFPSPAADYVEKQLSLDEKFIKHPAATYFMRAANTCYR-AGILQGALLVIDASLNPCDGS 60 Query: 27929 IVVARLDDEVTVKRFK 27976 ++V LD E VKR++ Sbjct: 61 LLVCALDGEFRVKRYR 76 >ref|NP_510904.1|hypothetical protein Length = 61 Score = 39.7 bits (91), Expect = 0.066 Identities = 21/53 (39%), Positives = 34/53 (64%) Frame = +1 Query: 44275 LKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSPSVSSLKKILDAMPVSIS 44433 LK+LR+ + +++ +LAK + NSTI IE +P ++KKI DA+ V I+ Sbjct: 4 LKELREEKGITRYQLAKLTELQNSTIRSIETEVKNPGFLTVKKICDALQVDIA 56 >ref|NP_049417.1|putative cro-like regulatory protein Length = 67 Score = 39.3 bits (90), Expect = 0.086 Identities = 20/56 (35%), Positives = 32/56 (57%) Frame = +1 Query: 44275 LKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSPSVSSLKKILDAMPVSISEFF 44442 +K+LR DL+Q E AK G T T+S E+N +S S ++ KI + + S+ + Sbjct: 10 IKELRARHDLTQEEFAKSVGTTPQTVSAWEKNVLSISPKNMAKICNKYHIHSSDLY 65 >ref|NP_835522.1|similar to repressor Length = 237 Score = 39.3 bits (90), Expect = 0.086 Identities = 22/68 (32%), Positives = 39/68 (57%) Frame = +2 Query: 27818 PRADYLLRVRGLSMKDAGILDGDLLAVHRTQQIRDGQIVVARLDDEVTVKRFKRQGHHVW 27997 P D L+V G SM+ DG+++ V +T I++GQI + +++E VK+ + + Sbjct: 152 PTHDLALKVNGDSMEPM-FKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLT 210 Query: 27998 LVAENADF 28021 LV+ N D+ Sbjct: 211 LVSLNKDY 218 >ref|NP_803311.1|cI-like repressor Length = 237 Score = 39.3 bits (90), Expect = 0.086 Identities = 22/68 (32%), Positives = 39/68 (57%) Frame = +2 Query: 27818 PRADYLLRVRGLSMKDAGILDGDLLAVHRTQQIRDGQIVVARLDDEVTVKRFKRQGHHVW 27997 P D L+V G SM+ DG+++ V +T I++GQI + +++E VK+ + + Sbjct: 152 PTHDLALKVNGDSMEPM-FKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLT 210 Query: 27998 LVAENADF 28021 LV+ N D+ Sbjct: 211 LVSLNKDY 218 >ref|NP_046921.1|gp26 Length = 128 Score = 38.9 bits (89), Expect = 0.11 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = +2 Query: 27752 GSPILAAAHIDRHCPLAPDYFT-PRADYLLRVRGLSMKDAGILDGDLLAVHRTQQIRDGQ 27928 G P A +++ L T P A Y +R G + GIL G LL V ++ DG Sbjct: 2 GFPSPAQDYVEERISLDKLLLTRPSATYFMRA-GATHYQEGILYGALLVVDASRTPCDGS 60 Query: 27929 IVVARLDDEVTVKRFKR 27979 ++V R+D E+ +KR+++ Sbjct: 61 LLVCRMDGELRIKRYRK 77 >ref|NP_049430.1|Hypothetical protein Length = 165 Score = 37.4 bits (85), Expect = 0.33 Identities = 22/53 (41%), Positives = 32/53 (60%) Frame = +1 Query: 44272 RLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSPSVSSLKKILDAMPVSI 44430 RLK+LR+LR +++ ELA++ GVT TI E S+ KK+ + VSI Sbjct: 3 RLKELRELRKITRVELAEKIGVTKLTILNWEHGTHEIKGSNAKKLAEYFNVSI 55 >ref|NP_569803.1|hypothetical protein Length = 867 Score = 37.4 bits (85), Expect = 0.33 Identities = 44/170 (25%), Positives = 63/170 (37%), Gaps = 2/170 (1%) Frame = +3 Query: 80064 QATDVGVNKATARLFPVANTPQGI-LDLGLEGLKDKIKTIGLYNSKADNLMKTCHLLLER 80240 +A V K RL + QG +D G+ L ++ G YN K + ++ TC ER Sbjct: 166 RAEAAAVLKRWGRLAVMVAERQGAKIDRGVYDLARVLRVPGSYNRKGEPVLVTC----ER 221 Query: 80241 HGGEVPNTREALEALPGVGRKTANVILNTAFGQPTMAVDTHIFRVANRTRIAPGKNVLEV 80420 GG + E E L G + + TA G+ DT A AP Sbjct: 222 GGGGPLSIEELTERLNEAGVREQDGDRRTAMGEVVSKPDTWEHAAATCDYFAPTIKAWRD 281 Query: 80421 EQKLMRHVPREFLHDAHHWLILHG-RYTCVARKPRCGSCVIEDLCEYKDK 80567 EQ + + H+WL+ R C R C+ E+ E K Sbjct: 282 EQ----------ITERHNWLVTQAVRIMCGLR----NGCLTEEQFEQARK 317 >ref|NP_050113.1|Rad protein Length = 108 Score = 37.4 bits (85), Expect = 0.33 Identities = 18/64 (28%), Positives = 41/64 (64%) Frame = +1 Query: 44260 DVGARLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSPSVSSLKKILDAMPVSISEF 44439 +V +K++ K R LS +++A++AG+ + S+ + + PS+S ++K+ D + V +++ Sbjct: 2 NVYENVKRIAKQRGLSLQKVAEQAGLGIN--SIYDWRKIDPSISKVQKVADVLNVDLNDL 59 Query: 44440 FAGE 44451 +GE Sbjct: 60 ASGE 63 >ref|YP_024716.1|gp43 Length = 128 Score = 37.4 bits (85), Expect = 0.33 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 5/87 (5%) Frame = +1 Query: 44998 HDQVAWRRQ*LPAAYQGIHPHYGDGAEQQRHDASHHRRGDGLQQHAQLGDEGQHDGRASR 45177 HD + RR + A + G P G+ ++RHDA H R G Q Q +G+HD Sbjct: 42 HDGLDRRRDEVGAGHDG-RPEEGEA--EKRHDAEHDRHGPPGQLDEQ--PDGEHDA---- 92 Query: 45178 DDHDHGIEVA-----GQRHRPGHFRVR 45243 + DHG+ A RP HF VR Sbjct: 93 GNRDHGVGNAFGDGLDVHERPRHFPVR 119 >ref|NP_076698.1|repressor Length = 278 Score = 37.4 bits (85), Expect = 0.33 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 3/102 (2%) Frame = +2 Query: 27725 LPVVGEVAAGSPILAAAHIDRHCPLAPDYFTPRADYL-LRVRGLSMKDAGILDGDLLAVH 27901 +P++G +AAG P+ A + D P+ + + DY L V G SM + I G + + Sbjct: 154 VPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSM-EPKIPFGSYVLIE 212 Query: 27902 RTQQIRDGQI--VVARLDDEVTVKRFKRQGHHVWLVAENADF 28021 + DG I V+ + D + T+K+ + + LV+ N +F Sbjct: 213 AVPDVTDGTIGAVLFQDDCQATLKKVYHEIDCLRLVSINKEF 254 >ref|NP_700411.1|regulatory protein Length = 231 Score = 37.0 bits (84), Expect = 0.43 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Frame = +1 Query: 44260 DVGARLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSP-SVSSLKKILDAMPVSISE 44436 ++G R++QLR+ +++ ELA+ GV + IS +E + +L ++ D + V I+E Sbjct: 2 NIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIAE 61 Query: 44437 FFAGE 44451 F + Sbjct: 62 LFTSD 66 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 590,626,025 Number of Sequences: 14420 Number of extensions: 12393350 Number of successful extensions: 45697 Number of sequences better than 0.5: 28 Number of HSP's better than 0.5 without gapping: 10304 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 45577 length of database: 3,019,461 effective HSP length: 122 effective length of database: 1,260,221 effective search space used: 51796343321 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig61 (120,422 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818250.1|gp199 361 1e-98 ref|NP_817564.1|gp117 358 6e-98 ref|NP_818618.1|gp80 259 4e-68 ref|NP_040655.1|unknown protein 217 2e-55 ref|YP_006950.1|DNA polymerase 203 3e-51 ref|NP_046685.1|putative DNA polymerase 197 1e-49 ref|NP_852498.1|DNA polymerase I 171 1e-41 ref|YP_024516.1|putative DNA polymerase 152 5e-36 ref|NP_817633.1|gp44 134 3e-30 ref|YP_024986.1|DNA polymerase I 124 2e-27 ref|YP_024429.1|DNA polymerase I 124 3e-27 ref|NP_039708.1|predicted 66.2Kd protein 122 8e-27 ref|NP_046860.1|DNA polymerase 122 1e-26 ref|NP_075308.1|gp41 119 6e-26 ref|YP_164694.1|orf59 113 4e-24 ref|NP_818252.1|gp201 108 9e-23 ref|NP_047372.1|putative maturation protein 107 2e-22 ref|NP_039614.1|gene IV product 103 3e-21 ref|NP_640280.1|DNA polymerase 98 2e-19 ref|NP_047359.1|maturation protein 98 2e-19 ref|YP_024521.1|putative DNA repair protein 92 1e-17 ref|NP_510894.1|phage assembly protein 89 7e-17 ref|NP_064753.1|RP DNA pol 87 5e-16 ref|NP_047956.2|gp11 86 6e-16 ref|NP_813726.1|gp11 86 8e-16 ref|NP_040579.1|G IV protein 81 2e-14 ref|YP_024841.1|Pas55 80 6e-14 ref|NP_858986.1|DNA polymerase lacking N-terminal exonuclease do... 79 1e-13 ref|YP_164688.1|recombinase A 79 1e-13 ref|NP_076827.1|Csp 78 2e-13 ref|NP_817817.1|gp56 77 4e-13 ref|YP_164288.1|regulatory protein 75 1e-12 ref|NP_775225.1|DNA polymerase1 72 2e-11 ref|NP_943839.1|gp61 70 6e-11 ref|NP_570330.1|DNA polymerase 69 1e-10 ref|NP_848283.1|DNA polymerase 68 2e-10 ref|NP_523322.1|gene 5B protein 68 2e-10 ref|NP_523320.1|DNA polymerase 68 2e-10 ref|NP_041982.1|DNA polymerase 66 8e-10 ref|NP_052094.1|5B protein 65 1e-09 ref|NP_052093.1|DNA polymerase 65 1e-09 ref|NP_877458.1|putative DNA directed DNA polymerase 64 4e-09 ref|YP_195169.1|RecA-like recombination protein 58 2e-07 ref|NP_853574.1|gp14 55 1e-06 ref|NP_705685.1|gp62 54 3e-06 ref|NP_861734.1|UvsX RecA-like recombination protein 53 6e-06 ref|NP_919002.1|putative DNA polymerase I 53 6e-06 ref|NP_795675.1|putative DNA polymerase A domain 53 7e-06 ref|NP_958166.1|gp61 53 7e-06 ref|NP_049656.2|UvsX RecA-like recombination protein 52 1e-05 ref|NP_803318.1|DNA polymerase A domain 52 1e-05 ref|NP_944374.1|gp66 51 2e-05 ref|YP_006958.1|flap endonuclease 46 7e-04 ref|NP_046572.1|ABC transporter 44 0.003 ref|NP_932573.1|RNaseH ribonuclease 42 0.010 ref|NP_891595.1|UvsX 42 0.013 ref|NP_813764.1|putative DNA polymerase 42 0.017 ref|NP_891817.1|RnaseH ribonuclease 42 0.017 ref|NP_899249.1|RNaseH ribonuclease 42 0.017 ref|NP_858984.1|5'-exonuclease similar to N-terminal domains of ... 41 0.029 ref|YP_195220.1|RNase H 41 0.029 ref|NP_944975.1|putative exodeoxyribonuclease 41 0.029 ref|NP_813767.1|putative exonuclease 40 0.038 ref|NP_944210.1|RNaseH ribonuclease 38 0.24 ref|NP_817695.1|gp17 37 0.32 ref|NP_542296.1|unknown 37 0.42 >ref|NP_818250.1|gp199 Length = 1131 Score = 361 bits (926), Expect = 1e-98 Identities = 302/1105 (27%), Positives = 494/1105 (44%), Gaps = 87/1105 (7%) Frame = +1 Query: 54952 LRVHTEYSLVDGLVRLKPLIEATVEGGMPAVAVTDDSNLFGLVKTYKAAQGAGLKPVIGA 55131 L H E S++DG R + + E G +VA+TD ++ G + KA Q AG+KPV+GA Sbjct: 8 LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 67 Query: 55132 DL-WMENPHDEEH-------PYRVTLLAMDNDGYRHLTELISQGWSEGQQRGQGILKKEW 55287 + WM N D + LLA +N G R+L L S + Q + L Sbjct: 68 EQRWMLNIADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQLDPGL 127 Query: 55288 IFARSAGLIALSGARDGEIGRYLLSEHGQAARELCEGWKAAFPGRFYLEVQR----TGRE 55455 + GL A G Y++++ AR+ F FY E+ Sbjct: 128 LMQYRDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTWQFINPVS 187 Query: 55456 HDEECLHL--------SVALAAETETPVVATNDVRFLTREDYWAHETRVAIGEGKALDDP 55611 +++ L+ V LA E P+V ND + + H + G D Sbjct: 188 PEQQALNARMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSWKKDQ 247 Query: 55612 RRERRYSEEQYLKSPQEMAELF-------SDLPEALENSVMIAARCNVDVPLGEIFLPEY 55770 ER ++ + ++ + E+ S + EA+ NS IA +CN ++ + +P Sbjct: 248 HEERGHAAD-WMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLAMPRL 306 Query: 55771 PVPDGMSMDGFFRKISHDGLTERLDKLFSGENPIYPGRDLAEYEPAYRERLDFELNIILE 55950 D F R I +DK E YR+RL++E +I++ Sbjct: 307 HATDAEDAAAFRRAIEEGFKRFVVDKGLP--------------EDVYRQRLEYEAKLIID 352 Query: 55951 MGFPGYFLIVMDFIQWAKDNDIP-------------VGPGRGSGAGSLVAYALKITDLDP 56091 GYF +V D++ A++ GPGRGS GSLV Y + IT +DP Sbjct: 353 KNMAGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDP 412 Query: 56092 LEYDLLFERFLNPERVSMPDFDVDFCMEKRDRVIEYVASRYGRDAVSQIVTFGTMXXXXX 56271 ++YDL+FERF+NP+R PD DVDF K+ V +Y+ RYG + V I T Sbjct: 413 IKYDLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQM 472 Query: 56272 XXXXXXXQGKPY-------SMGDKLSKLIPFEVGMTLAKAIEQEPALKEYLDS------- 56409 QG P+ + +++ ++ PFE GM L + E P E L Sbjct: 473 LQDLCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPED-EDPPTWGEVLQEIGGELAP 531 Query: 56410 -DEESQEIWDMALKLEGITRGTGKHAGGVVIAPTKLTDFSPLLCDEDGSGL---VVQYDK 56577 ++ +++++ ++ + RG G H GV++ + F L+ G Q+D Sbjct: 532 YAKKYPDLFNLMEQMVNMVRGVGVHPAGVLVNTDPV--FPGLIPTRRKGGADIRATQFDM 589 Query: 56578 NDIEEAGLVKFDFLGLRTLTIIDWALEMV----------DTVRAREGQGPLDIASIP--- 56718 ++EE G VK D L + L ++D A +++ D +G + ++ Sbjct: 590 YELEELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVITLNEER 649 Query: 56719 -LDDVPTFDMLKKAETTAVFQLESRGMKELIKRLQPDSLEDMIALVALFRPGPLQ-SGMV 56892 L+D +D + + +T +FQ+ + +L R +P S+ DM L ++ RPG + G++ Sbjct: 650 YLNDPAIYDQIDRGQTAGLFQVNTPAGTKLAMRFRPRSVVDMADLASINRPGVTRVPGLL 709 Query: 56893 DDFINRKHGRAEVAYPHPDYQHELLKPVLEP-----TYGIILYQEQVMQIAQVLAGYSLG 57057 D +I R+HGR +V Y HP L++ + P TYGI++YQEQ+++ A+ LAG++ G Sbjct: 710 DKYIERRHGREQVTYDHP-----LMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPG 764 Query: 57058 QADMLRRAMGKKKPEEMAKQRAGFMEGCAAN------GIDKDLAGNLFDLVEKFAGYGFN 57219 +A+ LR+ +GKKK E + + F++GC AN G + +A ++ ++ Y FN Sbjct: 765 EAERLRKGIGKKKMEIINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGAYAFN 824 Query: 57220 KSHSAAYGLVSYQTAWLKAHYPAPFMAAVLSTEMDNLDKVVPLIEECRNQGLTVTPPDVN 57399 KSH Y L Q AW+K +Y F+ L + + DK + + ECR + V PPDVN Sbjct: 825 KSHGVGYALQPCQEAWVKHYYFDEFITGCL---VIHTDKTIRFLRECRQRKRAVLPPDVN 881 Query: 57400 MGSYKFTVDEQGRVVYGLGAIRGVGEGPIGAIVEAREADGAFSDLFDFCRRVD-AKRLNK 57576 FT+ ++G + +GL I G+G+ + I+ A+ F DL DF R + K Sbjct: 882 QSGAGFTLTDEG-IRFGLTDISGIGDAAMPDIL----ANRPFKDLDDFLARASKSGGAKK 936 Query: 57577 RTLEALIRSGALDNLGPTRAVXXXXXXXXXXXXXQSTTNANLGMMDMFGEAFSEPEAGDA 57756 ++ALI+ GA D G R V A + + + E ++ Sbjct: 937 GVVDALIKVGAFDFTGEHRQVMLEKVYRHRRGLSAPVKWAKMSLDEQVAEIAAKRRVKP- 995 Query: 57757 YADYRGVREWTDKERLAG-EKDTLGLYLTGHPIDEYESELKRFVSTRIVDLKP-QRGESQ 57930 DY V + D + + E + LG +++ P+ +Y + +D + G+ Sbjct: 996 -EDY-PVYNFEDPQFIHDLEVEMLGTFVSYDPMAKYARMIDGECIRHPMDYDDFEPGDRF 1053 Query: 57931 RVAGLVVAMRTMKSKRGDTMAFITL 58005 V G +V RT + K G MAF+ + Sbjct: 1054 CVGGKLVKARTHRQKNGKQMAFLAV 1078 >ref|NP_817564.1|gp117 Length = 320 Score = 358 bits (919), Expect = 6e-98 Identities = 179/317 (56%), Positives = 233/317 (73%), Gaps = 1/317 (0%) Frame = +1 Query: 113704 ALNAALSQIERQFGKGAVMRLGDTPRVATPAISTGSLGLDIALGVGGLPMGRVVEIFGPE 113883 +L AL++++++FG G+ M+LGD P+ I TGS+ LD ALG+GG P GRVVEI+GPE Sbjct: 2 SLKEALAEVDKRFGAGSAMKLGDKPQTVD-VIPTGSIALDGALGIGGYPRGRVVEIYGPE 60 Query: 113884 SSGKTTMTLSVIAQGQKQGKTCAFIDAEHALDPTYAEKLGVNLDDLLVSQPDTGEQALEI 114063 SSGK+T+ L +A QK G A+IDAEH+LDP YA+ LGV+LD+L+V QPDTGEQALEI Sbjct: 61 SSGKSTLCLHAVANAQKAGGNAAYIDAEHSLDPEYAKALGVDLDNLVVVQPDTGEQALEI 120 Query: 114064 CDMLXXXXXXXXXXXXXXAALTPRAEIEGEMGDSHVGLQARLMSQALRKVTGNIKNANCM 114243 D+L AAL PRAE+EG++GDSHVGL ARLMSQA+RK+TG I + N + Sbjct: 121 VDLLVKSGELSIVVVDSVAALVPRAELEGDIGDSHVGLHARLMSQAMRKLTGTISSTNTL 180 Query: 114244 VMFVNQIRMKIG-VMFGNPETTTGGNALKFYSSVRLDIRRTGSVKQGDEAIGNETRVKVV 114420 ++VNQ+R KIG V +G ETTTGG AL+FY+SVR+D+RR + K+GDEA+GN TRVKVV Sbjct: 181 TLWVNQLREKIGNVGYGPNETTTGGKALRFYASVRMDVRRIATEKEGDEAVGNRTRVKVV 240 Query: 114421 KNKVAPPFRQAEFQILYGKGIYHAGEVVDIGVQQGLVDKAGAWYSYQGNKIGQGKANAAQ 114600 KNK+APP R AEF ++YG+GI E++D+ V QGLV K+GAW+ Y + QGK A Q Sbjct: 241 KNKLAPPHRNAEFSVVYGEGISREVELLDLAVSQGLVKKSGAWFKYGDKNVAQGKPKAVQ 300 Query: 114601 FLEDNPAIMEEIENEIR 114651 +L+ NP I + IE IR Sbjct: 301 WLKANPDITDSIEQAIR 317 >ref|NP_818618.1|gp80 Length = 1111 Score = 259 bits (662), Expect = 4e-68 Identities = 237/941 (25%), Positives = 406/941 (43%), Gaps = 85/941 (9%) Frame = +1 Query: 54943 FVHLRVHTEYSLVDGLVRLKPLIEATVEGGMPAVAVTDDSNLFGLVKTYKAAQGAGLKPV 55122 FV H +S D L E GM A+ ++ N+ + + + G+KP+ Sbjct: 3 FVSFHTHNTFSYADALGMPSIHAARAEELGMWALGTSNHGNVNDHAQFERECKERGIKPI 62 Query: 55123 IGADLWMENPHDEEHPYR---VTLLAMDNDGYRHLTELISQGWSEGQQRGQGILKKEWIF 55293 G +++ +E+ R +T+ AM+ GYR+L +I+Q + + Q + E + Sbjct: 63 FGCEIYFSPVGEEDKTRRKTHLTIFAMNEIGYRNLNRIITQSYVDAYQ--WPTVSWENLE 120 Query: 55294 ARSAGLIALSGARDGEI------GRYLLSEHGQA-------ARELCEGWKAAFPGRFYLE 55434 A G++ LSG D + G+YL + AR + + F RF LE Sbjct: 121 ANHEGILVLSGCADSLLSCTLLGGKYLGEQRSHVTDDDMDNARRQIQRYLDVFGNRFALE 180 Query: 55435 VQRTGREHDEECLHLSVA-LAAETETPVVATNDVRFLTREDYWAHETRVAIGEGKALDDP 55611 VQR L+ ++A L+ +T P+VAT DV + E + + K+ D Sbjct: 181 VQRFPHYDRTRALNPAIAELSRDTGVPLVATADVHYPFPEQNKL-QALLHAARWKSSPDF 239 Query: 55612 RRERRYSEEQYLKSPQEMAELFSDLP----------EALENSVMIAARCNVDVPLGEIFL 55761 E + L P E+ DL +A++ + ++A RC V++P + Sbjct: 240 AAEASWEHSANLTYPLSDKEIHDDLVATGLDSADAWKAIQYTSILAERCTVELPKAKPL- 298 Query: 55762 PEYPVPDGMSMDGFFRKISHDGLTERLDKLFSGENPIYPGRDLAEYEPAYRERLDFELNI 55941 + G++ + G R+ + P D+A + Y +RL +E I Sbjct: 299 -RFVCDKGLTAKQQLSREIAKGWKYRV-----AQRP-----DMARRKAEYVKRLQYEFKI 347 Query: 55942 ILEMGFPGYFLIVMDFIQWAKDNDIPVGPGRGSGAGSLVAYALKITDLDPLE---YDLLF 56112 I + F YFL++ D ++ AKD I VGP RGS A SL++Y L+IT++DPL ++F Sbjct: 348 ITDKDFGDYFLVISDLVRRAKDKSIDVGPARGSAAASLISYLLRITEIDPLHPLFNKMVF 407 Query: 56113 ERFLNPERVSMPDFDVDFCMEKRDRVIEYVASRYGRDAVSQIVTFGTMXXXXXXXXXXXX 56292 ERF++P R PD D+DF EKR + + YG + V+ + Sbjct: 408 ERFIDPFRSDYPDIDLDFDDEKRWEIELDAKNLYGPENVASVAN----NTGYHGKNTLKD 463 Query: 56293 QGKPYSMGDKLSKLIPFEVGMTLAKAIEQEPALKEYLDSDEESQEI----------WDMA 56442 + Y + + K I + + ++ ++ + L+S EI MA Sbjct: 464 VARAYKLPLETFKAIAKRTTVRVETDDKRNDSISDVLESYATHPEIAGLIEAHADKLAMA 523 Query: 56443 LKLE-----GITRGTGKHAGGVVIAPTKLTDFSPLLCDEDGSG------LVVQYDKNDIE 56589 + LE G + HA G VIA + D + + GSG V+ YDK D E Sbjct: 524 VALESGNGDGNLHSSSVHACGFVIASDPIPDVCAIYLKDKGSGSKKTKVQVIPYDKRDAE 583 Query: 56590 EAGLVKFDFLGLRTLTII----DWALEMVDTV----------------RAREGQGP-LDI 56706 G++K DFLG T+ I W+ ++ + R +E G + Sbjct: 584 SLGMLKVDFLGSATMGAIGLMRKWSRVELEELYLSIYKDYDRWIRVQKRIKESGGKRVGF 643 Query: 56707 ASIPLDDVPTFDMLKKAETTAVFQLESRGMKELIKRLQPDSLEDMIALVALFRPGPLQSG 56886 + D++ + + + Q E +++ + +QP +++ A AL RPGP G Sbjct: 644 TANRFDNI--LKRFRNDDVVGIMQFEGGTTRQVCRNVQPVDFDELAACTALSRPGPYYGG 701 Query: 56887 MVDDFINRKHGRAEVAYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGQAD 57066 D++ K+G + A HP + + T+G I+YQEQ+M I + LAG+ + Sbjct: 702 QYTDYVAVKNGEKDWARIHP----KGFDRHVAFTFGQIVYQEQIMWILRDLAGFDNAEVL 757 Query: 57067 MLRRAMGKKKPE-EMAKQRAGFMEGCAAN-GIDKDLAGNLFDLVEKFAGYGFNKSHSAAY 57240 +R+ +GKK E + + F++GCA G+D D A +F + AGY FN +H+ +Y Sbjct: 758 RVRKIIGKKLGEFQFEAIKQAFIDGCAQTCGVDPDTALRVFGAIRTAAGYAFNIAHAYSY 817 Query: 57241 GLVSYQTAWLKAHYPAPFMAAVLSTEMDNLDKV---VPLIEECRNQGLTVTPPDVNMGS- 57408 L++Y K + F A+ L D ++ ++++ + + D+N+ Sbjct: 818 ALIAYWQMGFKMDHTTEFFASTLYKNGDGKKEIPRRTAVLQDAEAHRIGIGGWDLNLSGA 877 Query: 57409 -----YKFTVDEQ--GRVVYGLGAIRGVGEGPIGAIVEARE 57510 Y + + G V+ G I G+ E AI++ R+ Sbjct: 878 NWRPYYDHSAHSRNLGTVMPGFQQIPGIAEATAKAILDWRD 918 >ref|NP_040655.1|unknown protein Length = 430 Score = 217 bits (552), Expect = 2e-55 Identities = 134/418 (32%), Positives = 223/418 (53%), Gaps = 9/418 (2%) Frame = +2 Query: 95825 YTGEPISLNFQNIQVREVLSVLSDFSGLNIVASDSVQGSVTLNLQQVPWDQALALILQSH 96004 + + +++ I +R + +++DF G ++V S+QG V+L+ VP QA L+L+S+ Sbjct: 19 FASDRLTVKHHEIDIRVAIPLVADFCGRSVVLGPSIQGVVSLDFDDVPCSQAFDLLLESN 78 Query: 96005 GLASRRNGDVIVVAPVDELAQMERQTLENRAQSEQLA---PLVTDYVQVRYAKATDLAAM 96175 L S GDV+V+ +D++ ER+ + R L + + + +A A+++ ++ Sbjct: 79 HLLSSMVGDVLVITAMDQVLNSERKADDLRTFRRDLFNANDIERRVINIVHASASEVVSL 138 Query: 96176 LRGSEGFGLLSERGR-VTVDERTNTLLVRDTREQLASIRGMLERLDVPVRQVQIEARIVI 96352 + E F L G +TVDERTN++ ++ +++ +DVPVRQV IEA +V Sbjct: 139 FK--ESFMSLDAPGMSMTVDERTNSVFAALPSSFFPALESVIQAIDVPVRQVAIEANVVE 196 Query: 96353 ARDTASRELGVNWG----ISQRQGVTFDDDGVGSVVDRNPSGANRXXXXXXXXXXXXXXX 96520 A S+ LG+NWG + VT D V + Sbjct: 197 ASVDWSKRLGLNWGGALSLGNWSAVTAGDLSVAA-------------------------- 230 Query: 96521 XXXXXXXYLSGDVLLDLELRALESEGKSQTISQPKVITANQKTAVIKQGQEIPYQESTSS 96700 +LS + LD A+E+EG + +S+P ++T ++++A + +G E+PYQ+S Sbjct: 231 GSSIGFGFLSNTLSLDGLFTAMENEGNGRVVSRPTLLTLDRQSASVLRGTELPYQQSAGD 290 Query: 96701 GATNVEFKEAVLSLEATPQITPDGSIVMDLLINNDTV-ADNSYDGAPAIDTNSIETQVLV 96877 GAT+V FK A LSLE P I+PD SIV+++L++ D+ N+ DG P IDTN + T + V Sbjct: 291 GATSVAFKHAALSLEVKPVISPDNSIVIEVLVSRDSPNFSNAIDGVPPIDTNRLVTTIRV 350 Query: 96878 DDGATVVLGGILTSEQLRNLYKTPFLGDLPLIGSLFRYTQESNEKVELLIFITPTIIG 97051 G TVVLGG+ ++ + + + +P IG LF+ + E+ ELLIF+TP I+G Sbjct: 351 PHGQTVVLGGVYSTINQQGSSRVSGISRIPGIGRLFKKKEHVTEQYELLIFLTPRILG 408 >ref|YP_006950.1|DNA polymerase Length = 855 Score = 203 bits (516), Expect = 3e-51 Identities = 168/617 (27%), Positives = 286/617 (46%), Gaps = 57/617 (9%) Frame = +2 Query: 22199 FDLETTSLNYMEADIVGIGLSLDAGEAAYIPVAHRYLDAPEQLDRASVLAALKPLWEDPA 22378 FD ET++L + ++G+ +S + YI + L +V L+ + + Sbjct: 163 FDSETSALYCRDGYLLGVSISHQEYQGVYID--------SDCLTEVAVYY-LQKILDSEN 213 Query: 22379 KAKIGQNLKYDISVLARYDIEVA-------GRLEDTMLASYVLNATATRHDMDSLALKY- 22534 + NLK+D+ +Y + + RL DTML YVL+ H + SLA+KY Sbjct: 214 HTIVFHNLKFDMHFY-KYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYT 272 Query: 22535 -LGEKTISFEEIAGKGAK-------QLTFDQIALEQAAPYACEDVDITLRLHRELRPRVD 22690 +G+ ++ K T+D I + PYA +D D T+RLH P+++ Sbjct: 273 DMGDYDFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFFLPKIE 332 Query: 22691 GEGRLAAVLDDIELPLVPVLSRMERNGVALDAERLHAQSXXXXXXXXXXXXXAYELA--- 22861 +L ++ D+ +P L R+E GV + +RL Y Sbjct: 333 KNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYTYPEVK 392 Query: 22862 ------GREFNLGSPKQLGEILFDELKI-PVIKKTPKGAPSTAEAVLEELALDYPLPKVI 23020 FN S KQL +LFD + + P K T GA ST L ELA +P+ K + Sbjct: 393 QLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELATQHPIAKTL 452 Query: 23021 IEHRGFAKLKSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLSSSDP-NLQNIPIRTEEG 23197 +E R KL STY +K+ ++A + T +H+ +T +GRLSSS NLQ +P + Sbjct: 453 LEIRKLTKLISTYVEKILLSIDADGC-IRTGFHEHMTTSGRLSSSGKLNLQQLP---RDE 508 Query: 23198 RKIRQAFVARPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEGR-------DIHTATAA 23356 I+ VA PGYR++A D + E+ A LSGD+ + F R D H+ A Sbjct: 509 SIIKGCVVAPPGYRVIAWDLTTAEVYYAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAH 568 Query: 23357 EVFGVALDAVSGEQ-----RRSAKAINFGLIYGMSAWGLGRQLH---IERN--------- 23485 VF + + ++ R++AKAI FG++YG + ++ +E+ Sbjct: 569 MVFKLQCEPRDVKKLFPALRQAAKAITFGILYGSGPAKVAHSVNEALLEQAAKTGEPFVE 628 Query: 23486 ----QAQTYIDRYFDRYPGVARFMERIRAQAADDGYVETVFGRRLYLPEINAQNRTRRQA 23653 A+ YI+ YF ++P + R++++ Q + G++ + FGR+ L I++++R + Sbjct: 629 CTVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHGFIYSHFGRKRRLHNIHSEDRGVQGE 688 Query: 23654 AERTAINAPMQGTAADIIKLAMIDVDRWLREGDFDAWM--VMQVHDELVFEVKEAQVDAF 23827 R+ NA +Q ++D + L +D D + + M VM VHD +V V+E +D + Sbjct: 689 EIRSGFNAIIQSASSDSLLLGAVDADNEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQY 748 Query: 23828 TDAVRQRMEGAAKLDVP 23878 + + + ++ + +P Sbjct: 749 NEILIRNIQKDRGISIP 765 >ref|NP_046685.1|putative DNA polymerase Length = 1305 Score = 197 bits (502), Expect = 1e-49 Identities = 232/1005 (23%), Positives = 412/1005 (40%), Gaps = 117/1005 (11%) Frame = +1 Query: 54961 HTEYS---LVDGLVRLKPLIEATVEGGMPAVAVTDDSNL---FGLVKTYKAAQGAGLKP- 55119 HT+ S L+D +K L++ V+ +A+TD L ++T + + G P Sbjct: 7 HTDRSNIRLLDSTNSVKELLKTAVKMEYKGLAITDHEVLSAHLDAIRTVREMKKKGDMPE 66 Query: 55120 ----VIGADLWMENPHDE---EHPYRVT------LLAMDNDGYRHLTELISQGWSE---- 55248 ++G + ++ + +E + VT +LAMD G+ L L SQ W Sbjct: 67 DFKLILGNEAYLVDSLEEVRDNYKSGVTKFPHFLMLAMDPKGHEQLRILSSQAWENSFYT 126 Query: 55249 GQQRGQGILKK--EWIFARSAG-LIALSGARDGEIGRYLLS--------------EHGQA 55377 G +KK E + ++ G +IA + E+ +LL +H Sbjct: 127 GTMERVPTVKKDVEELLSKDPGHIIATTACLGSEVNIHLLKIKAFEETGDSQSIKQHKLK 186 Query: 55378 ARELCEGWKAAF-PGRFYLEVQRTGREHDEECLHLSVALAAETETPVVATNDVRFLTRED 55554 E F +F++E+Q E C + +A + ++ T D +L ED Sbjct: 187 IHEFITWCIEVFGKDKFFIELQPALSEEQIYCNKKLIDIANGYDLQMIVTTDAHYLRPED 246 Query: 55555 YWAHETRVAIGEGKA-------------LDDPRRERRYSE----EQYLKSPQEMAELFSD 55683 H+ + +G+ +D+ Y + +Q +K+ + E+ D Sbjct: 247 RAIHQAFLNAKDGEREVDSFYEACFVQNVDEIHERMDYIDKEVIDQAIKNTMLIGEMIED 306 Query: 55684 LPEALENSVMIAARCNVDVPLGEIFLPEYPVPDGMS--------MDGFFRKISHDGLTER 55839 +E+ +I + L +F P Y + + D + K+ DG E+ Sbjct: 307 Y--TIEHEPIIPKMELPNFKLRHLFKPAYDQYEYIKKMSESADEQDRYLLKLIEDGFEEK 364 Query: 55840 LDKLFSGENPIYPGRDLAEYEPAYRERLDFELNIILEMGFPGYFLIVMDFIQWAKDN--- 56010 L + + E + +LN Y++ V + I D+ Sbjct: 365 LKTSELTREAFHKILNRINVELGELWEISQKLN----QSMSSYYITVREIINIIWDDECG 420 Query: 56011 -DIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEKRDR 56187 D VG RGS AG LV Y L T ++P++YDL R ++ R +PD D+D KR + Sbjct: 421 GDSLVGAARGSAAGYLVNYLLDNTQINPMQYDLPHWRHIHKSRPDLPDIDIDTEGSKRQK 480 Query: 56188 VIEYVASRYGRDAVSQIVTFGTMXXXXXXXXXXXXQGKPYSMGDKLSKLIPFEVGMTLA- 56364 +++ + R+G V QI TFGT G + LS +IPFE G Sbjct: 481 ILKALRERFGDKRVLQIATFGTEGSKSALQTACRGLGIDNDISQYLSGMIPFERGSNWPL 540 Query: 56365 -------KAIEQEPALKEYLDSDEESQEIWDMALKLEGITRGTGKHAGGVVIAPTKLTDF 56523 K ++P +KE++ E+ + + ALK+EG+T HA GV+I + T Sbjct: 541 KHCFYGDKETGRKP-IKEFIREVEQYPNLKETALKIEGLTNKRSSHAAGVIIFNDEYTKS 599 Query: 56524 SPLLCDEDGSGLVVQYDKNDIEEAGLVKFDFLGLRTLTIIDWALEMVDTVRAREGQGPLD 56703 + ++ G+ + Q++ D E G VKFD L + L I L+ + E QG L Sbjct: 600 NAMMKTPKGA-YITQFNMGDSEAMGSVKFDLLTIEALDKIRVTLDQLIENNEIEWQGSLK 658 Query: 56704 IA--------SIPLDDVPTFDMLKKAETTAVFQLESRGMKELIKRLQPDSLEDMI---AL 56850 I +D ++M E +FQ + + + +++P +L + +L Sbjct: 659 ETYNKYIHPDVIEYEDDKLWEMAGNGEIMDLFQFSTEVGHQSVVKVKPKNLLEAAVTNSL 718 Query: 56851 VALFRPGPLQSGMVDDFINRKHG-----RAEVAYPHPDYQHELLKPVLEPTYGIILYQEQ 57015 + L G Q VD ++ K+ Y + + +++ L+ YG+ QE Sbjct: 719 MRLMSDGEEQP--VDTYVKYKNNLNKWYEEMTRYGLSEKEIRVMERHLKDIYGVADTQEV 776 Query: 57016 VMQIA--QVLAGYSLGQADMLRRAMGKKKPEEMAKQRAGFMEGCAANGIDKDLAGNLFDL 57189 VMQ+ + +A + + +++ LR+++ KKK + + + F + G +L ++++ Sbjct: 777 VMQMVMDKDIANFDIKESNYLRKSIAKKKEDVLKEVEELFFKKGKEIGTSDNLLNYVWNV 836 Query: 57190 -VEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY-PAPFMAAVLS----------------T 57315 ++ GY F+ H+ AY +++ Q L Y P + A L+ T Sbjct: 837 QFKRQFGYSFSLLHTLAYSIIALQELNLNYRYNPLYWNTACLTVNSGGIDTEDTKDNKKT 896 Query: 57316 EMDNLDKVVPLIEECRNQGLTVTPPDVNMGSYKFTVD-EQGRVVYGLGAIRGVGEGPIGA 57492 N KV I R +G+ + PD+N + F D +++GL + G+G+ I Sbjct: 897 AATNYGKVASAIGNIRQRGIKIDLPDINKADFGFRTDINNNSILFGLKGMNGIGDDVIHH 956 Query: 57493 IVEAREADGAFSDLFDFCRRV-DAKRLNKRTLEALIRSGALDNLG 57624 IV R +SD DF R+ + + K + LI+ G D+ G Sbjct: 957 IVLNR----PYSDFNDFIERMFKSGIIKKGQVIQLIKGGCFDSFG 997 >ref|NP_852498.1|DNA polymerase I Length = 802 Score = 171 bits (434), Expect = 1e-41 Identities = 180/681 (26%), Positives = 285/681 (41%), Gaps = 113/681 (16%) Frame = +2 Query: 22214 TSLNYMEADIVGIGLSLDAGEAAYIPVAHRYLDAPE-QLDRAS----VLAALKP-LWEDP 22375 T L+ + +I + LS A E+ +P++H+ E +DR VL L L+++ Sbjct: 128 TPLDPWKGEICTVSLSAAAHESRVVPISHKVGQVFEPSMDRDEARKLVLDLLDEYLFKNE 187 Query: 22376 AKAKIGQNLKYDISVLARYDIEVAGRLEDTML---------ASYVLN-----------AT 22495 KI NL ++ A+Y + G++ D ++ A +N Sbjct: 188 KVLKIAVNLSFETKYAAKYGKYILGKVADPLIMWVRCLQIAAPQKINNPKKPTSGWGLKP 247 Query: 22496 ATRH-------DMDSLALKYLGEKTISFEEI-AGKGAKQLTFDQIALEQAAPYACEDVDI 22651 AT+H D +L KY K F+EI A KG L Y+ ED D Sbjct: 248 ATKHIFGVTMNDFSALLKKY---KVNFFDEIDASKGEGLL------------YSAEDSDY 292 Query: 22652 TLRLHRELRPRVDGE-GRLAAVLDDIELPLVPVLSRMERNGVALDAERLHAQSXXXXXXX 22828 ++ H E ++ + R L IE+P V+ ME G+ D + Sbjct: 293 AVQ-HYEYWSQIAAQISRYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQ 351 Query: 22829 XXXXXXAYELAGREFNL-------GSPKQLGEILFDELKIPVIKKTPKGAPSTAEAVL-- 22981 ++A FN+ G ++ ++FD LKIP+ K GA EA++ Sbjct: 352 EQAAERIKQIAKETFNIDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDM 411 Query: 22982 ------------EELALDYPLPK------------------------------------- 23014 EE L LP+ Sbjct: 412 AFMLENKLNDIDEEKYLGVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALE 471 Query: 23015 VIIEHRGFAK---LKSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLSSSDPNLQNIPIR 23185 VI + + K L S++ + +N + R+H Y T TGRL+S +PN QN+P Sbjct: 472 VIDQLKKIQKYTTLLSSHIIGREKYLNFMSGRIHAGY-SPFTETGRLNSFNPNGQNVPRP 530 Query: 23186 TEEGRKIRQAFVARPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVF 23365 + KIR FV +PG + D+S ELR+MA SGD+ + + F G D+H TA+ + Sbjct: 531 DNDEFKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMT 590 Query: 23366 GVALDAVSGEQRRSAKAINFGLIYGMSAWGL------GRQLHIERNQAQTYIDRYFDRYP 23527 G + + ++R AKA NFG+ YG + L + ++ ++ Y Sbjct: 591 GKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAVKTAYK 650 Query: 23528 GVARFMERIRAQAADDGYVETVFGRRLYLPEINAQNRTRRQAAERTAINAPMQGTAADII 23707 + + +I +A + GYV+T++G LP IN+ NR R +AER A N P+QG+AADI+ Sbjct: 651 RIPEYQRKIVLEAREQGYVQTIYGYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIM 710 Query: 23708 KLAMIDV-------DRWLREGDFDAWMVMQVHDELVFEVKEAQ--VDAFTDAVRQRME-- 23854 K ++ + L G D M+ Q+HDE++FE+ + V A ++Q ME Sbjct: 711 KKVQNEIYESIGKQEGVLSHGSAD--MIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQP 768 Query: 23855 GAAKLDVPLTVEANAGDNWDE 23917 VP+ E + G W E Sbjct: 769 PVPGFPVPIEAEGSVGYRWGE 789 >ref|YP_024516.1|putative DNA polymerase Length = 1072 Score = 152 bits (385), Expect = 5e-36 Identities = 117/486 (24%), Positives = 226/486 (46%), Gaps = 76/486 (15%) Frame = +2 Query: 22595 FDQIALEQAAPYACEDVDITLRLHRELRPRVDGEGRLAAV-LDDIELP-LVPVLSRMERN 22768 +D +E PYA D D+ R+H ++ ++ + R ++ L ++ P L L+R+E N Sbjct: 488 YDWFPIELMHPYASGDTDVCRRIHCDVIKKLKEQDRPKSMHLLEVNYPRLTKSLARIESN 547 Query: 22769 GVALDAERL--------------HA--QSXXXXXXXXXXXXXAYELAGRE---------- 22870 G+ D + + HA + Y++A E Sbjct: 548 GLYCDLDYMKENDESYESEMAKNHATMREHWAVKEFEEYQYNLYQMALEEHEKKPKDRDK 607 Query: 22871 ---------------FNLGSPKQLGEILFDEL--KIPVIKKTPKGAPSTAEAVLEEL--- 22990 F+ S G +++D L ++P K+ K P A +L Sbjct: 608 DIHQYRDKFKDGKWMFSPSSGDHKGRVIYDILGIQLPYDKEYVKEKPFNANVKEADLTWQ 667 Query: 22991 -------ALDYPLPKVIIE------------HRGFAKLKSTYTDKLPQLVNATTRRLHTS 23113 A+ Y L + ++ H ++++T KL ++N R LH S Sbjct: 668 DYKTDKKAIGYALDNLELKDDVKELLELLKYHASMQTKRNSFTKKLLNMINKQKRTLHGS 727 Query: 23114 YHQAVTATGRLSSSDPNLQNIPIRTEEGRK------IRQAFVAR-PGYRIVAADYSQIEL 23272 + + T T RLSSS+PNLQN+P T + K I+++FV+R ++ +DYS +E+ Sbjct: 728 FSETGTETSRLSSSNPNLQNLPAHTSDVNKFDYKHPIKRSFVSRFENGVLLGSDYSALEM 787 Query: 23273 RIMAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSAW 23452 RI+ + D +L +F G DIH ATA+ V+ ++ V+ E+R++ KA+NFGL +G S + Sbjct: 788 RIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQATKAVNFGLAFGESPF 847 Query: 23453 GLGRQLHIERNQAQTYIDRYFDRYPGVARFMERIRAQAADDGYVETVFGRRLYLPEINAQ 23632 + ++E ++A+ ++YF P V ++ + GYV+T+ G R ++ + Sbjct: 848 SFAGKNNMEVSEAEEIFEKYFQTKPSVKTSIDNVHEFVQQYGYVDTMHGHRRFIRSAQST 907 Query: 23633 NRTRRQAAERTAINAPMQGTAADIIKLAMIDVDRWLREGDFDAWMVMQVHDELVFEV--K 23806 ++ + R + N +QG+ + + +++ +D +++ + + ++ VHD ++ + + Sbjct: 908 DKKIKNEGLRQSFNTIIQGSGSFLTNMSLTYLDDFIQSRNLKSKVIATVHDSILIDCPPE 967 Query: 23807 EAQVDA 23824 EA++ A Sbjct: 968 EAKIMA 973 >ref|NP_817633.1|gp44 Length = 604 Score = 134 bits (336), Expect = 3e-30 Identities = 109/395 (27%), Positives = 182/395 (46%), Gaps = 1/395 (0%) Frame = +2 Query: 22628 YACEDVDITLRLHRELRPRVDGEGRLAAVLDDIELPLVPVLSRMERNGVALDAERLHAQS 22807 Y+ D + RL ++L P V ++ L E L + S MER G LD E S Sbjct: 191 YSGMDPILAARLLQKLIPLVPA---VSQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLS 247 Query: 22808 XXXXXXXXXXXXXAYELAGREFNLGSPKQLGEILFDELKIPVIKKTPKGAPSTAEAVLEE 22987 A L G E N+ SP Q+ E L + + ++T G P + +L+ Sbjct: 248 EDMLRKQDYWASKADILYGLE-NVNSPIQVAEALMRR-GVKIKERTETGQPKVDKVLLDR 305 Query: 22988 LALDY-PLPKVIIEHRGFAKLKSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLSSSDPN 23164 L + PL + I E + + K + T+ K ++ R H + + T R+S + Sbjct: 306 LIKEGDPLAEAITEAKKWGKWEKTWVRKFLDSRDSKDR-CHANINPLQARTARMSITGIP 364 Query: 23165 LQNIPIRTEEGRKIRQAFVARPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEGRDIHT 23344 Q +P +R+ F+A G + + DY ELR++A LSGD+ ++ AF +G D+H Sbjct: 365 AQTLP---SGDWLVRRCFLADEGQLMASVDYQAQELRVLAALSGDRTMIQAFKDGADLHL 421 Query: 23345 ATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQTYIDRYFDRY 23524 TA + +R+ AK +NFG +YG A + Q ++ A+ +D + Y Sbjct: 422 MTARAAWPDREITKDSPERKYAKTVNFGRVYGGGAKTVAEQTGLDMEAAKQVVDGFDRAY 481 Query: 23525 PGVARFMERIRAQAADDGYVETVFGRRLYLPEINAQNRTRRQAAERTAINAPMQGTAADI 23704 PGV R +++ +A+ +G++ T GRRL + A +A+N +Q T+ D+ Sbjct: 482 PGVQRLSAKLQREASQNGHIVTPKGRRLPVDPSRAY----------SALNYLIQSTSRDV 531 Query: 23705 IKLAMIDVDRWLREGDFDAWMVMQVHDELVFEVKE 23809 A+I L E F ++ + +HDE++ V E Sbjct: 532 TGEALIR----LHEAGFTKYLRLPIHDEILASVPE 562 >ref|YP_024986.1|DNA polymerase I Length = 633 Score = 124 bits (311), Expect = 2e-27 Identities = 162/644 (25%), Positives = 262/644 (40%), Gaps = 62/644 (9%) Frame = +2 Query: 22175 LGEADIFCFDLETTSLNYMEADIVGIGLSLDAGEAAYIPVAHRYLDAPEQLDRASVLAAL 22354 L + + + +D E T L Y + G ++ G++ Y D EQ D L Sbjct: 17 LTKYEAWAYDTECTGLKYKVDKVFGFSVATPDGQSGYF-------DIREQPDAVQWLVEQ 69 Query: 22355 KPLWEDPAKAKIGQNLKYDISVLARYDIEVA-GRLEDTMLASYVLN-----------ATA 22498 ++ + N +D + I++ +++DT + + +N A Sbjct: 70 ADSYKGTI---VCHNASFDYRMSLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKA 126 Query: 22499 TRHDMDSLALKYLGEKTIS--FEEIAGK-GAKQLTFDQIALEQAAP------YACEDVDI 22651 + +D LA KY+G + + ++E+A G K Q+ AP YAC D ++ Sbjct: 127 GDYSLDYLAKKYVGAQKYAEIYDELAAMFGGKATRKTQMPNLYRAPSGLVRKYACPDAEL 186 Query: 22652 TLRLHRELRPRVDGEGRLAAVLDDIELPLVPVLSRMERNGVALDAERLHAQSXXXXXXXX 22831 TL L E + + G V E ++P L R E GV +D Sbjct: 187 TLELWLEQQELIAKRGLEKIVA--FERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVR 244 Query: 22832 XXXXXAYELAGREFNLGSPKQLGEI--------LFDELKIPVIKKTPKGAPSTAEAVLEE 22987 ++LAGREFN SPKQ+ E+ ++ V+++T G P L Sbjct: 245 ENQAKMFQLAGREFNPNSPKQVREVFGAKEERGVWTSRDGTVLERTATGNPCLDADALR- 303 Query: 22988 LALDYPLPKVIIEHRGFAKLKSTYTDKLPQLVNATTRRLHTSYHQ-----AVTATGRLSS 23152 A+ PL ++E R K K T+ K + ++ R++ + +Q T TGRLS Sbjct: 304 -AMKDPLAAAVLELRSNIKTKDTFLAK-HVVEHSVGGRVYPNINQMKGEDGGTGTGRLSY 361 Query: 23153 SDPNLQNIPIRTEE-GRKIRQAFVARPGYRIVAADYSQIELRIMAHL--SGDKGLLDAFA 23323 + P LQ IP R + I+ AF+ G + +D + E+RI AHL + + + A+A Sbjct: 362 TGPALQQIPSRNKRIAAIIKPAFLPEEGQLWLDSDMASFEVRIFAHLVAAYNPAIARAYA 421 Query: 23324 EG--RDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERN---- 23485 E D+H ++ G+ +A S + +AK +N G+I+ + L + Sbjct: 422 ENPELDLH-QWVGDLMGIPRNA-SYSGQANAKQMNLGMIFNRGDGAVADSLGMPWEWCEF 479 Query: 23486 ---------------QAQTYIDRYFDRYPGVARFMERIRAQAADDGYVETVFGRRLYLPE 23620 +A+ I Y + GV R + A + G+++T GRRL P Sbjct: 480 TDKKGDLIRYKKAGPEAKAVIAAYHTQIQGVKTLATRAQKIAEERGWIQTAHGRRLRFP- 538 Query: 23621 INAQNRTRRQAAERTAINAPMQGTAADIIKLAMIDVDRWLREGD---FDAWMVMQVHDEL 23791 N + A I Q TAAD K + WLR D D M++ HD Sbjct: 539 ----NGYKSYKASGILI----QATAADENK------ENWLRIEDALGSDGSMILNTHDSY 584 Query: 23792 VFEVKEAQVDAFTDAVRQRMEGAAKLDVPLTVEAN-AGDNWDEA 23920 V E + V++ +E L VPL +E + G NW EA Sbjct: 585 SMSVDE-NWKPIWERVKKAVE-RQTLRVPLLLEFDGVGKNWAEA 626 >ref|YP_024429.1|DNA polymerase I Length = 633 Score = 124 bits (310), Expect = 3e-27 Identities = 161/644 (25%), Positives = 262/644 (40%), Gaps = 62/644 (9%) Frame = +2 Query: 22175 LGEADIFCFDLETTSLNYMEADIVGIGLSLDAGEAAYIPVAHRYLDAPEQLDRASVLAAL 22354 L + + + +D E T L Y + G ++ G++ Y D EQ D L Sbjct: 17 LTKYEAWAYDTECTGLKYKVDKVFGFSVATPDGQSGYF-------DIREQPDAVQWLVEQ 69 Query: 22355 KPLWEDPAKAKIGQNLKYDISVLARYDIEVA-GRLEDTMLASYVLN-----------ATA 22498 ++ + N +D + I++ +++DT + + +N A Sbjct: 70 ADSYKGTI---VCHNASFDYRMSLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKA 126 Query: 22499 TRHDMDSLALKYLGEKTIS--FEEIAGK-GAKQLTFDQIALEQAAP------YACEDVDI 22651 + +D LA KY+G + + ++E+A G K Q+ AP YAC D ++ Sbjct: 127 GDYSLDYLAKKYVGAQKYAEIYDELAAMFGGKATRKTQMPNLYRAPSGLVRKYACPDAEL 186 Query: 22652 TLRLHRELRPRVDGEGRLAAVLDDIELPLVPVLSRMERNGVALDAERLHAQSXXXXXXXX 22831 TL L E + + G V E ++P L R E GV +D Sbjct: 187 TLELWLEQQELIAKRGLEKIVA--FERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVR 244 Query: 22832 XXXXXAYELAGREFNLGSPKQLGEI--------LFDELKIPVIKKTPKGAPSTAEAVLEE 22987 ++LAGREFN SPKQ+ E+ ++ ++++T G P L Sbjct: 245 ENQAKMFQLAGREFNPNSPKQVREVFGAKEERGVWTSRDGTILERTATGNPCLDADALR- 303 Query: 22988 LALDYPLPKVIIEHRGFAKLKSTYTDKLPQLVNATTRRLHTSYHQ-----AVTATGRLSS 23152 A+ PL ++E R K K T+ K + ++ R++ + +Q T TGRLS Sbjct: 304 -AMKDPLAAAVLELRSNIKTKDTFLAK-HVVEHSVGGRVYPNINQMKGEDGGTGTGRLSY 361 Query: 23153 SDPNLQNIPIRTEE-GRKIRQAFVARPGYRIVAADYSQIELRIMAHL--SGDKGLLDAFA 23323 + P LQ IP R + I+ AF+ G + +D + E+RI AHL + + + A+A Sbjct: 362 TGPALQQIPSRNKRIAAIIKPAFLPEEGQLWLDSDMASFEVRIFAHLVAAYNPAIARAYA 421 Query: 23324 EG--RDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERN---- 23485 E D+H ++ G+ +A S + +AK +N G+I+ + L + Sbjct: 422 ENPELDLH-QWVGDLMGIPRNA-SYSGQANAKQMNLGMIFNRGDGAVADSLGMPWEWCEF 479 Query: 23486 ---------------QAQTYIDRYFDRYPGVARFMERIRAQAADDGYVETVFGRRLYLPE 23620 +A+ I Y + GV R + A + G+++T GRRL P Sbjct: 480 TDKKGDLIRYKKAGPEAKAVIAAYHTQIQGVKTLATRAQKIAEERGWIQTAHGRRLRFP- 538 Query: 23621 INAQNRTRRQAAERTAINAPMQGTAADIIKLAMIDVDRWLREGD---FDAWMVMQVHDEL 23791 N + A I Q TAAD K + WLR D D M++ HD Sbjct: 539 ----NGYKSYKASGILI----QATAADENK------ENWLRIEDALGSDGSMILNTHDSY 584 Query: 23792 VFEVKEAQVDAFTDAVRQRMEGAAKLDVPLTVEAN-AGDNWDEA 23920 V E + V++ +E L VPL +E + G NW EA Sbjct: 585 SMSVDE-NWKPIWERVKKAVE-RQTLRVPLLLEFDGVGKNWAEA 626 >ref|NP_039708.1|predicted 66.2Kd protein Length = 595 Score = 122 bits (306), Expect = 8e-27 Identities = 127/503 (25%), Positives = 218/503 (43%), Gaps = 22/503 (4%) Frame = +2 Query: 22379 KAKIGQNLKYDISVLAR-YDIEVAG---RLEDTMLASYVLN-----ATATRHDMDSLALK 22531 K + QN +D+ VL + + IE+ G R+ DT + + +++ A H ++ L K Sbjct: 90 KRMVLQNASFDLQVLDQCFGIEMEGLWPRVLDTQILAKLVDPRPFEAGGFGHSLEELIAK 149 Query: 22532 YLGEKT----------ISFEEIAGKGAKQLTFDQIALEQAAPYACEDVDITLRLHRELRP 22681 ++ E ++ E K T D E YA D T R+ + L P Sbjct: 150 FISEDQAENVKKLMAKLAAEHKTTKAKIWSTIDLFHPEYLL-YAGMDTIFTARVCKSLTP 208 Query: 22682 RVDGEGRLAAVLDDIELPLVPVLSRMERNGVALDAERLHAQSXXXXXXXXXXXXXAYELA 22861 V R L E + + S ++R G LD E + + A+ Sbjct: 209 LVPDVSRS---LVPYEHKISEICSYIDRQGFLLDVEYSRSLAEKWLADQEVWEAIAFTEY 265 Query: 22862 GREFNLGSPKQLGEILFDELKIPVIKKTPKGAPSTAEAVLEELALD-YPLPKVIIEHRGF 23038 G E + S + L E L +E+ + + +T G A+L++L D L + E + Sbjct: 266 GVE-KVNSTEDLAEGL-EEMGVKITGRTETGKRQVNAALLDKLVEDGNELAAIAQEAKKL 323 Query: 23039 AKLKSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAF 23218 K + T+ K ++ R HT + T R+S + Q +P +R+ F Sbjct: 324 GKWRKTWVQKFIDTRDSEDR-CHTFINPLQARTSRMSITGIPAQTLP---SSDWIVRRCF 379 Query: 23219 VARPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEGRDIH--TATAAEVFGVALDAVSG 23392 +A PG + + DY ELR++A LSGD+ +++AF G D+H TA AA+V Sbjct: 380 IAEPGDVMASVDYQAQELRVLAALSGDRNMIEAFENGADLHQMTADAAQV---------- 429 Query: 23393 EQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQTYIDRYFDRYPGVARFMERIRAQAAD 23572 R+ K NF +YG A L + I A+ + + YPGV R +++ +A Sbjct: 430 -PRKVGKTANFQKVYGGGAKALAEAVGISIPVAKRVHEAFSATYPGVERLSKKLAMEAGR 488 Query: 23573 DGYVETVFGRRLYLPEINAQNRTRRQAAERTAINAPMQGTAADIIKLAMIDVDRWLREGD 23752 +GY+ GRRL + +RT +A+N +Q ++ D+ A+I L E Sbjct: 489 NGYIVNAMGRRLPVD----SSRT------YSALNYMIQSSSRDVTCRALIR----LHEAG 534 Query: 23753 FDAWMVMQVHDELVFEVKEAQVD 23821 + ++ + +HDE+V + ++ + Sbjct: 535 YTPYLRLPIHDEIVASLPASEAE 557 >ref|NP_046860.1|DNA polymerase Length = 607 Score = 122 bits (305), Expect = 1e-26 Identities = 139/566 (24%), Positives = 241/566 (42%), Gaps = 35/566 (6%) Frame = +2 Query: 22202 DLETTSLNYMEAD----IVGIGLSLDAGEAAYIPVAHRYLDAPEQLDRASVLAALKPLWE 22369 D ETT L+ AD +V G E+ +P+ + E L R V AL Sbjct: 41 DTETTGLDIYSADFRCRLVQFGTQT---ESWVLPI-----EDLEMLGREEVHEAL----- 87 Query: 22370 DPAKAKIGQNLKYDISVLAR-YDIEVAG---RLEDTMLASYVLN-----ATATRHDMDSL 22522 D + QN YD+ VL R + I++ ++ DT + + +++ A H ++ L Sbjct: 88 DVLNKIVMQNASYDLQVLDRCFGIKMESLWPKILDTQILAKLVDPRPFGAGGFGHSLEEL 147 Query: 22523 ALKYLG-EKTISFEEIAGKGAKQLTFDQIAL--------EQAAPYACEDVDITLRLHREL 22675 +++ E+ + + + K AK+ + + + YA D T R+ L Sbjct: 148 IAEFISKEQAENVKGLMAKLAKEHKTTKAKIWSTIDLYHPEYLTYAGMDTVFTARICSAL 207 Query: 22676 RPRVDGEGRLAAVLDDIELPLVP-------VLSRMERNGVALDAERLHAQSXXXXXXXXX 22834 P V D+ PLVP + S ++R G LD E ++Q Sbjct: 208 APLVP----------DVSRPLVPYEHKISEICSYIDRRGFLLDVE--YSQQLADKWLGEQ 255 Query: 22835 XXXXAYELAGREFNLGSPKQLGEIL--FDELKIPVIKKTPKGAPSTAEAVLEELAL---- 22996 A L E+ + ++ F+EL T G + ++ Sbjct: 256 QVWEAVLL--NEYGIEKVNATEDVAEAFEELGHKFTAFTDSGKRKVDKGFYADMIAAGGE 313 Query: 22997 DYPLPKVIIEHRGFAKLKSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLSSSDPNLQNI 23176 L +++ E + K ++++ ++ R HT + T R+S + Q + Sbjct: 314 KAHLAEMVQEAKKLGKWRTSWVQTFLDTRDSEDR-CHTFVNPLQARTSRMSITGIPAQTL 372 Query: 23177 PIRTEEGRKIRQAFVARPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAA 23356 P +R+ F+A PG+ + + DY ELR++A LSGD+ ++ AF +G D+H TA Sbjct: 373 PA---SDWTVRRCFLADPGHVMASIDYQAQELRVLAALSGDRTMIQAFKDGADLHLMTAR 429 Query: 23357 EVFGVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQTYIDRYFDRYPGVA 23536 FG + +R+ AK +NFG +YG A + Q I A+ +D + YPGV Sbjct: 430 AAFGDHI-TKDDPERKYAKTVNFGRVYGGGANTVAEQTGISIETAKQVVDGFDKAYPGVT 488 Query: 23537 RFMERIRAQAADDGYVETVFGRRLYLPEINAQNRTRRQAAERTAINAPMQGTAADIIKLA 23716 R+ ++ +A +GY+ GRRL + +R+R +A+N +Q T+ D+ A Sbjct: 489 RYSRKLANEAKRNGYIINPMGRRLPV------DRSRTY----SALNYQIQSTSRDVTCKA 538 Query: 23717 MIDVDRWLREGDFDAWMVMQVHDELV 23794 +I L E F ++ + +HDE+V Sbjct: 539 LIR----LHEAGFTPYLRLPIHDEIV 560 >ref|NP_075308.1|gp41 Length = 608 Score = 119 bits (298), Expect = 6e-26 Identities = 130/511 (25%), Positives = 225/511 (44%), Gaps = 20/511 (3%) Frame = +2 Query: 22451 RLEDTMLASYVLNATA-----TRHDMDSLALKYLGEKTISFEEIAGKGAK-----QLTFD 22600 ++EDT + S++++ A T H ++ L Y+ T EE+ A+ + T D Sbjct: 118 KVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYIDPVTA--EEVKASMARLAKKHKTTKD 175 Query: 22601 QI--ALEQAAP----YACEDVDITLRLHRELRPRVDGEGRLAAVLDDIELPLVPVLSRME 22762 +I ++ P YA D + RL ++ P V L E L V+S +E Sbjct: 176 KIWALVDLDDPDYELYAGMDTILVSRLLGKVAPLVPEPSHK---LIPYEHKLAEVMSYVE 232 Query: 22763 RNGVALD---AERLHAQSXXXXXXXXXXXXXAYELAGREFNLGSPKQLGEILFDELKIPV 22933 R G LD +E+L A AY + ++ S ++L + L + + + Sbjct: 233 RTGFLLDVDYSEKLSADMLRKSEHYTAVARYAYGVD----SVNSTEKLADGL-ERTGVKI 287 Query: 22934 IKKTPKGAPSTAEAVLEELALD-YPLPKVIIEHRGFAKLKSTYTDKLPQLVNATTRRLHT 23110 +T G +LE LA + L K IE + + + T+ + +A R +H Sbjct: 288 KGRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSWEKTWVRNFIERRDANDR-VHP 346 Query: 23111 SYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFVARPGYRIVAADYSQIELRIMAHL 23290 + T R+S+++P+ QN+P +R+ F+A PG +V+ DY ELR++A L Sbjct: 347 GINPLQARTARMSTNNPSAQNLPAGDW---MVRRCFLADPGQLMVSVDYQAQELRVLAAL 403 Query: 23291 SGDKGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQL 23470 + D+ ++ AF + D+H TA DA SG R+ K +NF ++G + Q Sbjct: 404 ANDRTMIQAFKDNADLHQITA--------DA-SGVDRKVGKMVNFAYVFGSGPSTIAAQA 454 Query: 23471 HIERNQAQTYIDRYFDRYPGVARFMERIRAQAADDGYVETVFGRRLYLPEINAQNRTRRQ 23650 I +A+ I + YP V + ++ +AA+ GYV T GRRL + Sbjct: 455 GITFPEAKRVIAGFEQSYPEVTALSKSLQREAANLGYVITPTGRRLPVDPDRGY------ 508 Query: 23651 AAERTAINAPMQGTAADIIKLAMIDVDRWLREGDFDAWMVMQVHDELVFEVKEAQVDAFT 23830 A+N +Q T+ D+ A++ L E + + +HDE++ V EA+ +A Sbjct: 509 ----AALNYMVQSTSRDVTASAVLR----LHEAGMTPMIRLVIHDEVLASVPEAEAEATA 560 Query: 23831 DAVRQRMEGAAKLDVPLTVEANAGDNWDEAH 23923 + + ME + + T G +W A+ Sbjct: 561 KEIGRIMEQTFRGVLINTDPEVGGRSWGAAY 591 >ref|YP_164694.1|orf59 Length = 988 Score = 113 bits (283), Expect = 4e-24 Identities = 93/328 (28%), Positives = 154/328 (46%), Gaps = 21/328 (6%) Frame = +2 Query: 22883 SPKQLGEILFDEL------KIPVIKKTPKGAP----STAEAVLEELALDYPLPKVIIEHR 23032 +P + +L+D L + P + PK S +A E L Y K I + Sbjct: 531 TPNDMKRLLYDVLGYELPQEPPYVTGNPKNITWKSYSVGKAAQEYLEETYKT-KFIDLYS 589 Query: 23033 GFAKLKS---TYTDKLPQLVNATTRRLHTSYHQAVTATGRLSSSDP-NLQNIPIRTEEGR 23200 ++K ++ ++ DKLP+ V + S++ VT T RLSSS N QN RT+ Sbjct: 590 KYSKAETALGSFIDKLPE-VRDKDDFVKPSFNPYVTETSRLSSSGAFNAQNQTRRTDNPN 648 Query: 23201 KIRQAFVARPGYR-------IVAADYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAE 23359 ++ + YR ++ DYS +E+ MA LS D+ + A + +DIH A+ Sbjct: 649 DFNYSYGVKSMYRSRFKGGILLNMDYSALEIYTMAMLSKDRNMTQALLDHKDIHKHNASL 708 Query: 23360 VFGVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQTYIDRYFDRYPGVAR 23539 F V D V+ R SAK ++FG+ Y M L + L ++ +AQ D P V + Sbjct: 709 GFHVPYDEVTKNLRTSAKKVSFGIPYSMGIKTLAKDLGVDEKEAQRIYDAILATMPQVKQ 768 Query: 23540 FMERIRAQAADDGYVETVFGRRLYLPEINAQNRTRRQAAERTAINAPMQGTAADIIKLAM 23719 M + AA Y ET+ G R L +++ + R A+R A N +QG+ ++I+ L + Sbjct: 769 AMADSQEFAARYKYAETLNGFRRDLSNVDSILKDVRAKAKRQAFNTEIQGSGSNIVNLGL 828 Query: 23720 IDVDRWLREGDFDAWMVMQVHDELVFEV 23803 I V + + + ++ VHD ++ +V Sbjct: 829 ISVHEQFCKRNLKSKIIATVHDSILLDV 856 Score = 41.6 bits (96), Expect = 0.017 Identities = 23/69 (33%), Positives = 36/69 (52%) Frame = +2 Query: 22586 QLTFDQIALEQAAPYACEDVDITLRLHRELRPRVDGEGRLAAVLDDIELPLVPVLSRMER 22765 + +D I +E PYA D D+TLRL ++ R+ ++ +I L L+ +E Sbjct: 383 KFNYDWIDMEVQFPYAAADADVTLRLFNKMVGRIKKNRAWVNLVFNIFPRLNDALTTIEH 442 Query: 22766 NGVALDAER 22792 NG+ LD ER Sbjct: 443 NGIKLDMER 451 >ref|NP_818252.1|gp201 Length = 362 Score = 108 bits (271), Expect = 9e-23 Identities = 92/333 (27%), Positives = 158/333 (47%), Gaps = 19/333 (5%) Frame = +1 Query: 113719 LSQIERQFGKGAVMRLGDTPRVATPAISTGSLGLDIALGVGGLPMGRVVEIFGPESSGKT 113898 LS ++ ++G+ AVM D V P + +G+L LD A+GVGGLP RV+EI G E +GKT Sbjct: 11 LSDVQNKYGENAVMMAKDM--VTYPPVRSGTLALDFAIGVGGLPSDRVIEIGGTEGTGKT 68 Query: 113899 TMTLSVIAQG--QKQGKTCAFIDAEHALDPTYAEKL-GVNL--DDLLVSQPDTGEQALEI 114063 T++L + Q + + +D EH + +A +L G L D ++ +QPD EQA + Sbjct: 69 TLSLLAMQQFLLAQPERFALVLDLEHKMTKDWAVQLVGEELWDDRVIYAQPDHVEQATNM 128 Query: 114064 CDMLXXXXXXXXXXXXXXAALTPRAEIEGEMGDSHVGLQARLMSQALRKVTGNIKNANCM 114243 L RA IE E VG A +++ R + C+ Sbjct: 129 YSDLVGSGQICFALFDSIGGAAVRAGIEKEAEKVQVGGNANAITKFARLASNFSAKYRCL 188 Query: 114244 VMFVNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIR-----RTGSVKQGDE-AIGNET 114405 + NQ R+ + T GGN K +R+ ++ + +V G++ +G + Sbjct: 189 TVGTNQERVDMEGF--RRYMTPGGNGWKHACILRIRLKASTQDKVETVVNGEKMVVGRKI 246 Query: 114406 RVKVVKNKVAPPFRQAEFQIL------YGKGIYHAGEVVDIGVQQGLVDKAGAWYSYQGN 114567 ++VKN++A P R A + + YG GI E+V + + G++ + ++Y + Sbjct: 247 HAQIVKNQLAAPGRSAWWWMYHVPTEEYGFGIDTLDEIVRLAILTGVIKQRVSYYDHPAL 306 Query: 114568 KIG--QGKANAAQFLEDNPAIMEEIENEIRARL 114660 + G +G + ++ + D+ A+ I +E A L Sbjct: 307 ENGTVKGMTSLSKAIGDDEALRNTIVSETLAVL 339 >ref|NP_047372.1|putative maturation protein Length = 500 Score = 107 bits (268), Expect = 2e-22 Identities = 109/415 (26%), Positives = 182/415 (43%), Gaps = 18/415 (4%) Frame = +2 Query: 95867 VREVLSVLSDFSGLNIVASDSVQGSVTL---NLQQVPWDQALALILQSHGLASRRNGDVI 96037 + E S S +G+ +V V GSV+ +L + +L++HG ++G+ Sbjct: 75 IAEFASWYSQQTGIKVVLGQGVLGSVSFTAPDLVPAEYPAFFDSVLRAHGYYLVKDGNAY 134 Query: 96038 VVAPVDELAQMERQTLENRAQSEQLAPLVTDYVQVRYAKATDLAAMLRG-----SEGFGL 96202 V+ E E + P + + Y + + L+ +++ S F Sbjct: 135 VIKIAPEA-------------KEVITPAIVKLYRFNYIRNSKLSDLVQSTLKATSSEFVK 181 Query: 96203 LSERGRVTVD--ERTNTLLVRDTREQLASIRGMLERLDVPVRQVQIEARIVIARDTASRE 96376 + +V+ TN L+V T +QL + +L +DVP RQ+ IEA I + E Sbjct: 182 DKQVDNYSVEILPNTNALIVSGTAQQLEKLDVLLSAIDVPQRQIFIEAVITETELGDNSE 241 Query: 96377 LGVNWGISQRQGVTFDDDG-VGSVVDRNPSGANRXXXXXXXXXXXXXXXXXXXXXXYLSG 96553 LGVN + FD G V ++V+ + N + SG Sbjct: 242 LGVNLQAA------FDKAGFVTNLVNASKLKDN--------------------LFIFESG 275 Query: 96554 DVLLDLELRALESEGKSQTISQPKVITANQKTAVIKQGQEIPY--QESTSSGATNV---E 96718 D + ++A+ ++ +S+P ++ +++ I GQ +P+ ST+ G T+V E Sbjct: 276 D--FNALVKAISGSSDTRLLSRPNILIMDRERGYITVGQNVPFLVSNSTTDGGTSVQRIE 333 Query: 96719 FKEAVLSLEATPQITPDGSIVMDLLINNDTVADNSYDGAPAIDTN--SIETQVLVDDGAT 96892 K+ +SLE TP + D I L+IN ++ + A I TN ++ T V V G T Sbjct: 334 RKDVGVSLEVTPHVMGDDVI---LVINQESSSVTDSTIAADIITNKRTLMTTVAVKSGQT 390 Query: 96893 VVLGGILTSEQLRNLYKTPFLGDLPLIGSLFRYTQESNEKVELLIFITPTIIGDG 97057 +VLGG+++ E+ P L D PLIG LFR T N + EL + I T+ G Sbjct: 391 IVLGGLISDEKRNVESGVPVLKDTPLIGGLFRSTSTKNVQKELRVVIKSTVFIKG 445 >ref|NP_039614.1|gene IV product Length = 428 Score = 103 bits (258), Expect = 3e-21 Identities = 92/431 (21%), Positives = 197/431 (45%), Gaps = 26/431 (6%) Frame = +2 Query: 95834 EPISLNFQNIQVREVLSVLSDFSGLNIVASDSVQGSVTL---NLQQVPWDQALALILQSH 96004 EP++LN N VR + S +G +++ + V+G++T+ ++ D +L ++ Sbjct: 23 EPVTLN--NSPVRSFVQWYSSKTGKSVIVNPDVKGNITVFNADVNNANIDDFFKSVLNAN 80 Query: 96005 GLASRRNGDVIVVAPVDELAQM---------ERQTLENRAQSEQLAPLVTDYVQVRYAKA 96157 GL +V P+ +LA E + A + AP V + VR Sbjct: 81 GLVVVAGNPAVVSTPLTKLASQPSNEETYDDESDGVAYEAVPQSAAPAVPADLTVRNFNV 140 Query: 96158 TDLAA--MLRGSEGFGLLSERGRVTVDERTNTLLVRDTREQLASIRGMLERLDVPVRQVQ 96331 T + + +L ++ F + G V N+L+V + + + ++ + +DV QV Sbjct: 141 TRVRSSDVLPLAKIFVDSNGGGNVVDYPGNNSLVVSGSAQVMPALSDFITSIDVAREQVL 200 Query: 96332 IEARIVIARDTASRELGVNWGISQRQGVT----FDDDGVGSVVDRNPSGANRXXXXXXXX 96499 I++ ++ + S + +++ ++ G F+ +G+ + + +G + Sbjct: 201 IQS--LMFETSVSNGVDLSFALALASGGKVAGGFNTSALGTAL--STAGGS--------- 247 Query: 96500 XXXXXXXXXXXXXXYLSGDVLLDLELRALESEGKSQTISQPKVITANQKTAVIKQGQEIP 96679 +G++L L L+A++S+ S+ IS P+++T + ++ I GQ +P Sbjct: 248 ------------FGIFNGNILA-LSLQAVQSDSNSKVISTPRILTQSGQSGYISVGQNVP 294 Query: 96680 YQESTSSGAT--------NVEFKEAVLSLEATPQITPDGSIVMDLLINNDTVADNSYDGA 96835 + +G +E ++ +SL+ TP + +G +V+ + D++++ + Sbjct: 295 FVTGKVTGEAASVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLSNQAIASD 354 Query: 96836 PAIDTNSIETQVLVDDGATVVLGGILTSEQLRNLYKTPFLGDLPLIGSLFRYTQESNEKV 97015 + I+T V + DG T++LGG+++S Q + PF+ +PLIG LFR +S + Sbjct: 355 IITNQRQIQTTVQIKDGQTLLLGGLISSNQFDSDRSVPFMSKIPLIGWLFRSHSDSKDDR 414 Query: 97016 ELLIFITPTII 97048 + + +T +I Sbjct: 415 TMFVLLTAHVI 425 >ref|NP_640280.1|DNA polymerase Length = 661 Score = 98.2 bits (243), Expect = 2e-19 Identities = 121/493 (24%), Positives = 210/493 (42%), Gaps = 22/493 (4%) Frame = +2 Query: 22388 IGQNLKYDISVLARYDIEVAGRL-EDTMLASYVL--NATATRHD---MDSLALKYLG-EK 22546 + N K+DI L R ++ + L DTMLA YVL N A + + +LA +YLG K Sbjct: 92 VAHNAKFDIKWLIRAGLDPSRILVADTMLAEYVLTGNLKAGKKGALTLGALAKQYLGVTK 151 Query: 22547 TISFEEIAGKGAKQLTFDQIALEQAAPYACEDVDITLRLHRELRPRVDGEGRLAAVLDDI 22726 +++ G + LE+ D+ T L +LR + + + Sbjct: 152 DPLVDKLMRGGVSPRVIPKSLLERRNK---SDIFQTRNLWLKLRDEMMERDVIHLFYN-- 206 Query: 22727 ELPLVPVLSRMERNGVALDAERLHAQSXXXXXXXXXXXXXAYELA-GREFNLGSPKQLGE 22903 L PVL+ +E NGV LD ER+ + ++ GR N S Q+ E Sbjct: 207 RCLLSPVLADIELNGVHLDKERVCEEHDIASRRMAEVEADLMDMIDGR--NPRSVPQMQE 264 Query: 22904 ILFDELKIPVIKKTPKGAPSTAEAVLEELALDYPLPKVIIEHRGFAKLKSTYTDKLPQLV 23083 ++D LK +KK T E VL+ A + + FA+L + + L Sbjct: 265 FIYDVLKFKPLKKRGVEWRPTGEEVLQFEARTKKQQAFLDLKKEFAQLNADLSKNLDYFY 324 Query: 23084 NATTRR----LHTSYHQAVTATGRLSSSD--------PNLQNIPIRTEEGRKIRQAFVAR 23227 T R + ++QA T T RLSSS P ++I ++ RK ++ + AR Sbjct: 325 GVVTEREDCLFYAQFNQAQTVTHRLSSSGIKTKFEMYPKAKSIQLQNSP-RKYKRLYSAR 383 Query: 23228 -PGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRR 23404 P + ++ D +QIE R+ ++ D + +G D+H TA+ + + V+ +QR Sbjct: 384 NPDWYVIEMDGAQIEFRVAGYIGQDTRICQDIVDGVDVHRFTASVLNHCDEEEVTKDQRT 443 Query: 23405 SAKAINFGLIYGMSAWGLGRQLHIERNQAQTYIDRYFDRYPGVARFMERIRAQAADDGYV 23584 AK F +YG +G Q+ Y + + ++Y + + + + + + Sbjct: 444 DAKPDTFKPLYG-GQYGTDDQM--------AYYEAFRNKYQDITQAQQDWLMKVLRNKEI 494 Query: 23585 ETVFGRRLYLPEINAQNRTRRQAAERTAINAPMQGTA-ADIIKLAMIDVDRWLREGDFDA 23761 G Y P + + Q + N P+Q A A+II +A++ + ++ + Sbjct: 495 THPTGITFYYPNASMSSSGYCQDFP-SVCNYPVQNLATAEIIPIALVAIWHVMKAMKLQS 553 Query: 23762 WMVMQVHDELVFE 23800 ++V VHD ++ E Sbjct: 554 FLVNTVHDSVISE 566 >ref|NP_047359.1|maturation protein Length = 429 Score = 98.2 bits (243), Expect = 2e-19 Identities = 109/442 (24%), Positives = 182/442 (41%), Gaps = 38/442 (8%) Frame = +2 Query: 95837 PISLNFQNIQVREVLSVLSDFSGLNIVASDSVQGSVTLNLQQVPWD---QALALILQSHG 96007 P+ LN N VRE +S S +G ++ S V+G +T+ V D Q +L+++G Sbjct: 20 PVELN--NAPVREFVSWYSKTTGKPVIISPDVKGEITVYSADVTKDELPQFFTSVLRANG 77 Query: 96008 LASRRNGDVIVVA--------------PVDELA---QMERQTLENRAQSEQLAPLVTDYV 96136 +V PV + + T + + E A L+T Sbjct: 78 FDLSPGNPAVVQKFNRNTYEYSDSFSEPVPASSYDGDVPPPTGDFFTKPEIRANLITQTY 137 Query: 96137 QVRYAKATDLAAM----LRGSE--GFGLLSERGRVTVDERTNTLLVRDTREQLASIRGML 96298 V +A DLA + L+G G + GR+ LLV + Q + Sbjct: 138 PVNNVRAKDLAPVIDIFLKGENIAGTKVYPLMGRIF-------LLVTASASQHKELAAFF 190 Query: 96299 ERLDVPVRQVQIEARIVIARDTASRELGVNWGISQRQGVT----FDDDGVGSVVDRNPSG 96466 +DVP QV +E+ VI TAS ++ G + D + SV+ Sbjct: 191 PSVDVPRTQVLVES--VIFETTASDGFDFSFAAGDPSGSPVAGGINTDRLTSVLSSTGGS 248 Query: 96467 ANRXXXXXXXXXXXXXXXXXXXXXXYLSGDVLLDLELRALESEGKSQTISQPKVITANQK 96646 +G++L L L+ALE+ KS +S P+++T + + Sbjct: 249 FG-----------------------IFNGNIL-GLSLKALETSSKSTLLSMPRILTMSGQ 284 Query: 96647 TAVIKQGQEIPYQESTSSG-ATNV-------EFKEAVLSLEATPQITPDGSIVMDLLINN 96802 GQ +P+ +G A NV E + +SL+ P +TP G ++MD+ N Sbjct: 285 PGTFTAGQNVPFVTGRVTGEAANVNNPFQTIERHDVGISLKVVPVVTPGGLLIMDVSTNA 344 Query: 96803 DTVADNSYDGAPAIDTNSIETQVLVDDGATVVLGGILTSEQLRNLYKTPFLGDLPLIGSL 96982 D+++D+ +T SI T V + G TV+LGG++ + + + P++ +PLIG+L Sbjct: 345 DSISDSQTASDIITNTRSISTTVQLKSGQTVLLGGMVDNRESDSDSSVPWVSKIPLIGAL 404 Query: 96983 FRYTQESNEKVELLIFITPTII 97048 F + K L I I ++ Sbjct: 405 FTSKSSNANKRTLYILIRARVV 426 >ref|YP_024521.1|putative DNA repair protein Length = 418 Score = 91.7 bits (226), Expect = 1e-17 Identities = 81/315 (25%), Positives = 140/315 (44%), Gaps = 39/315 (12%) Frame = +1 Query: 113821 DIALGVGGLPMGRVVEIFGPESSGKTTMTLSVIAQGQKQGKTCAFIDAEHALDPTYAEKL 114000 D LG GG+P+GR+ E++G SGK+T + + + G +ID E D E+L Sbjct: 49 DYILG-GGIPLGRLTEVYGLTGSGKSTFAVHLSRIATQLGVITIWIDIEGTADNNRMEQL 107 Query: 114001 GVNLDDLLVSQPDTG-----------------EQALEICDMLXXXXXXXXXXXXXXAALT 114129 GV++ L Q G E ++ + A T Sbjct: 108 GVDVSKLFSIQSGEGRLKNTVELSVEQVGKELEYWIDTFNEKIPGVPIVFIWDSLGATRT 167 Query: 114130 PRAEIEGEMGDSHVGLQARLMSQALRKVTGNIKNANCMVMFVNQIRMKIGV-MFGNPETT 114306 + EI+G + + +GL+A + + VT + + N ++ +NQ R + M+G+P + Sbjct: 168 QK-EIDGGIDEKQMGLKASATQKVINAVTPKLNDTNTGLIVINQARDDMNAGMYGDPIKS 226 Query: 114307 TGGNALKFYSSVRLDIRRTGSVKQGDEAIGNE------TRVKVVKNKVAPPFRQAEFQIL 114468 TGG A + +S+R+ + + +KQ E G + R++ K+K++ P ++AE +L Sbjct: 227 TGGRAFEHSASLRIKVHKASQLKQKSELTGKDEYHGHIMRIETKKSKLSRPGQKAEADLL 286 Query: 114469 ----YGK--------GIYHAGEVVDIGVQQGLVDKAGAWYSY---QGNKIGQGKANAAQF 114603 GK GI V V++GL+ K GAW +Y G +I A Sbjct: 287 SDYMVGKEDDPILLNGIDLEHTVYKEAVERGLITK-GAWRNYVTLNGEEIKLRDAEWVPV 345 Query: 114604 LEDNPAIMEEIENEI 114648 L+DN + E+ + + Sbjct: 346 LKDNKELYLELFSRV 360 >ref|NP_510894.1|phage assembly protein Length = 426 Score = 89.4 bits (220), Expect = 7e-17 Identities = 99/433 (22%), Positives = 186/433 (42%), Gaps = 32/433 (7%) Frame = +2 Query: 95846 LNFQNIQVREVLSVLSDFSGLNIVASDSVQGSVTLNLQQVPWDQALALILQSHGLASRRN 96025 + N +R+ ++ S SG +++ S V+G+VT+ V + L++ ++ R Sbjct: 24 IEMNNSPLRDFVTWYSKQSGESVIVSPDVKGTVTVYSSDVKPEN-----LRNFFISVLRA 78 Query: 96026 GDVIVVAPVDELAQM----------ERQTLENRAQSEQLAPL----------VTDYVQVR 96145 + +V + + Q E + +N+ + AP VT ++ Sbjct: 79 NNFDMVGSIPSIIQKYNPNNQDYIDELPSSDNQEYDDNSAPSGGFFVPQNDNVTQTFKIN 138 Query: 96146 YAKATDLAAMLRGSEGF--GLLSERGRVTVDERTNTLLVRDTREQLASIRGMLERLDVPV 96319 +A DL +R E F S+ V + +N L+V ++ L ++ L +D+P Sbjct: 139 NVRAKDL---IRVVELFVKSNTSKSSNVLSIDGSNLLVVSAPKDILDNLPQFLSTVDLPT 195 Query: 96320 RQVQIEARIVIARDTASRELGVNWGISQRQGVT--FDDDGVGSVVDRNPSGANRXXXXXX 96493 Q+ IE I + + + G SQR V + D + SV+ + +G + Sbjct: 196 DQILIEGLIFEVQQGDALDFSFAAG-SQRGTVAGGVNTDRLTSVL--SSAGGS------- 245 Query: 96494 XXXXXXXXXXXXXXXXYLSGDVLLDLELRALESEGKSQTISQPKVITANQKTAVIKQGQE 96673 +GDVL L +RAL++ S+ +S P+++T + + I GQ Sbjct: 246 --------------FGIFNGDVL-GLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQN 290 Query: 96674 IPYQESTSSGAT--------NVEFKEAVLSLEATPQITPDGSIVMDLLINNDTVADNSYD 96829 +P+ +G + +E + +S+ P G+IV+D+ D+++ ++ Sbjct: 291 VPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQA 350 Query: 96830 GAPAIDTNSIETQVLVDDGATVVLGGILTSEQLRNLYKTPFLGDLPLIGSLFRYTQESNE 97009 + SI T V + DG T++LGG+ + PFL +PLIG LF +SNE Sbjct: 351 SDVITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNE 410 Query: 97010 KVELLIFITPTII 97048 + L + + TI+ Sbjct: 411 ESTLYVLVKATIV 423 >ref|NP_064753.1|RP DNA pol Length = 580 Score = 86.7 bits (213), Expect = 5e-16 Identities = 146/638 (22%), Positives = 250/638 (39%), Gaps = 63/638 (9%) Frame = +2 Query: 22199 FDLETTSLNYMEADIVGIGLSLDAGEAAYIPVAHRYLDAPEQLDRASVLAALKPLWEDPA 22378 FD+ET +L +A ++ + ++ G+ + V DA E R LA LW Sbjct: 5 FDIETDAL---DATVIHVLVAKRVGQKGFYVVR----DA-ETFKR---LAKQVTLW---- 49 Query: 22379 KAKIGQN-LKYDISVLAR---YDIEVAGRLEDTMLASYVLNATATR-HDMDSLALKYLGE 22543 IG N + +DI + + Y I + + DT++ S +L+ T H +D+L+ G Sbjct: 50 ---IGHNVIGFDIPQIKKLWGYGIPLKD-VADTLVMSRLLDPTRKGGHSLDALS----GN 101 Query: 22544 KTISFEEIAGKGAKQLTFDQIALEQAAPYACEDVDITLRLHRELRPRVDGEGRLAAVLDD 22723 + I F + + + L Y +DV I +++ +L+ + G+ + L Sbjct: 102 EKIDFHDFSTYTPEMLA-----------YCKQDVAINEKVYLQLKEELSNFGKASIQL-- 148 Query: 22724 IELPLVPVLSRMERNGVALDAE--------------RLHAQSXXXXXXXXXXXXXAY--- 22852 E + ++ E+NG LD + R+ A+ Sbjct: 149 -EHQMQAIVCEQEKNGFMLDTDIAEEIYTTCLRETNRIEAEIKEFMVPIAVPVKEVIIKR 207 Query: 22853 ----------------------ELAGREFNLGSPKQLGEILFDELKIPVIKKTPKGAPST 22966 ++A EFNLGSP Q+ + L D L KT G ++ Sbjct: 208 KKDGSIYSNQLLEGCNVQGDYTKIAWEEFNLGSPAQVNKRL-DRLGWKPTVKTKSG--NS 264 Query: 22967 AEAVLEELA-LDYPLPKVIIEHRGFAKLKSTYTDKLPQ---LVNATTRRLHTSYHQAVTA 23134 + E LA + P+ + + + L++ + KL Q + T R+H Sbjct: 265 YKICPENLATIPDTAPEAVKGLKAWKVLETRW--KLAQEWLQKSQETGRVHGRVILTGAV 322 Query: 23135 TGRLSSSDPNLQNIP------------IRTEEGRKIRQAFVARPGYRIVAADYSQIELRI 23278 T R + PN+ NIP + G + RQAF G +V D + I+LR+ Sbjct: 323 THRAAHQGPNMANIPSVPHGKDGILWKMEGMYGAECRQAFKVPEGKLLVGTDAAGIQLRV 382 Query: 23279 MAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSAWGL 23458 +AH D + +G DIHT + D R +AK + + G + Sbjct: 383 LAHYMNDPIYTEQVIDG-DIHTFNKEALGRYCKD------RPTAKTFIYAFLLGAGTGMI 435 Query: 23459 GRQLHIERNQAQTYIDRYFDRYPGVARFMERIRAQAADDGYVETVFGRRLYLPEINAQNR 23638 L QA + +++ P + + + +QAA G+++ + GR L Sbjct: 436 ASILGCNNRQANEAMANFYEAIPSLKKLKSQ-ASQAASMGWMKGLDGRVL---------- 484 Query: 23639 TRRQAAERTAINAPMQGTAADIIKLAMIDVDRWLREGDFDAWMVMQVHDELVFEVKEAQV 23818 R ++ A++ +QG I++LA + R ++ + VHDE EV E Q Sbjct: 485 --RIGSDHLALSVYLQGGETVIMRLANVFWQRQAKKEGINFKQCAWVHDEWQTEVDEDQA 542 Query: 23819 DAFTDAVRQRMEGAA---KLDVPLTVEANAGDNWDEAH 23923 + Q ++ A KL+ P+ EA G NW E H Sbjct: 543 QRLGEIQVQAIKDAGTFFKLNCPMDGEAKIGKNWLETH 580 >ref|NP_047956.2|gp11 Length = 617 Score = 86.3 bits (212), Expect = 6e-16 Identities = 115/449 (25%), Positives = 188/449 (41%), Gaps = 24/449 (5%) Frame = +2 Query: 22628 YACEDVDITLRLHRELRPRVDGEGRLAAV---LDDIELPLVPVLSRMERNGVALDAERLH 22798 YA DV T RL+ P +D E ++ L + E + + + M+R G+ALD E + Sbjct: 189 YAGLDVIYTARLN----PCLDAEHARLSIRPTLLEYEHEIAYMCAYMQRAGLALDLEYVD 244 Query: 22799 AQSXXXXXXXXXXXXXAYELAGREFNLGSPKQLGEILFDELKIPVIKKTPKGAPSTAEAV 22978 A N G+ Q+ E L + + ++T GA +AV Sbjct: 245 TLRRMLREEEEKHLYAAAMWGVDSVNSGA--QVAEALL-AMGETLTQRTDGGALKVDKAV 301 Query: 22979 LEELA-LDY-----------PLPKVIIEHRGFAKLKSTYTDKLPQLVNATTRRLHTSYHQ 23122 L LA LD PL + ++ + K +TY D+ + R+H + + Sbjct: 302 LLPLADLDRDWERIGAREPNPLAEAVLRAKRAGKWVTTYADRFANN-HDPHGRIHPNINT 360 Query: 23123 AVTATGRLS-SSDPNLQNIPIRTEEGRKIRQAFVA-RPGYRIVAADYSQIELRIMAHLSG 23296 TGR+S + D Q +P IR+A V P + + + D+ IE+R++A L+ Sbjct: 361 LQARTGRMSINGDFAAQTLP---SSDWMIRRAIVGDAPDHIMGSVDFQAIEMRVLAALAD 417 Query: 23297 DKGLLDAFAEGR---DIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQ 23467 K + D F G DIH TA + G+ + R+ K FG +YG + RQ Sbjct: 418 VKRMKDGFVNGGSDFDIHMYTAQLIKGL---EATKRDRKVFKGAGFGKVYGGGVATIARQ 474 Query: 23468 LHIERNQAQTYIDRYFDRYPGVARFMERIRAQAADDGYVE-TVFGRRLYLPEINAQNRTR 23644 + + Y +P + R R + +A G V +V GRRL L +NRT Sbjct: 475 TGATEAEIARAVAEYDRVFPEIKRASSRWQREARGTGLVTVSVTGRRLPLD----RNRT- 529 Query: 23645 RQAAERTAINAPMQGTAADIIKLAMIDVDRWLREGDFDAWMVMQVHDELVFEVKEAQVDA 23824 +N Q A D++ AM++ +R+ +M + +HDE+VF +A Sbjct: 530 -----YAVVNYQCQSAARDVLGQAMLN----MRDAGLLDYMKLPIHDEIVFSAPKAD--- 577 Query: 23825 FTDAVRQRMEGAAKLD---VPLTVEANAG 23902 + + E +D VP+ +A+ G Sbjct: 578 -AKDIAREFEKCMTMDLFGVPVVADADLG 605 >ref|NP_813726.1|gp11 Length = 624 Score = 85.9 bits (211), Expect = 8e-16 Identities = 116/453 (25%), Positives = 189/453 (41%), Gaps = 28/453 (6%) Frame = +2 Query: 22628 YACEDVDITLRLHRELRPRVDGEGRLAAVLDDIELPLVPVLSRMERNGVALDAERLHAQS 22807 YA DV T RL+ L + G + A L D E + + + M+R G+ LD E + Sbjct: 189 YAGLDVIYTARLNPCLDVEHERLG-VRAALTDYEHEIAYMCAYMQRAGLVLDLEYVDTLR 247 Query: 22808 XXXXXXXXXXXXXAYELAGREFNLGSPKQLGEILFDELKIPVIKKTPKGAPSTAEAVLEE 22987 A N G+ Q+ E L + + + T GA ++ VL Sbjct: 248 RMLREEEDKYATIAASWGVESVNSGA--QVSEALL-AMGETLTETTDGGALKVSKKVLLP 304 Query: 22988 LA-LDY-----------PLPKVIIEHRGFAKLKSTYTDKLPQLVNATTRRLHTSYHQAVT 23131 LA LD PL + ++ + K S+Y DK + + R+H + + Sbjct: 305 LADLDRDWERIGAREPNPLAEAVLRAKRAGKWVSSYADKFAEN-HDPLGRIHPTINTLQA 363 Query: 23132 ATGRLS-SSDPNLQNIPIRTEEGRKIRQAFVA-RPGYRIVAADYSQIELRIMAHLSG--- 23296 TGR+S S D Q +P IR+A + +P + + + D+ IE+R++A L+G Sbjct: 364 RTGRMSISGDFAAQTLP---SSDWMIRRAVLGDKPDHIVGSVDFQAIEMRVLAALAGVRR 420 Query: 23297 -DKGLLD------AFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSAWG 23455 +G LD + +G DIH TA + G + R+ K FG +YG Sbjct: 421 MTEGFLDPDPDPSVYPDGFDIHMYTARLIKG---PNATKRDRKVFKGAGFGKVYGGGIKT 477 Query: 23456 LGRQLHIERNQAQTYIDRYFDRYPGVARFMERIRAQAADDGYVE-TVFGRRLYLPEINAQ 23632 + RQ ++ + Y +P + R + + +A G V T GR L L Sbjct: 478 ISRQTGAPEHEIARAVAEYDRVFPEIKRASSKWQREARARGCVTVTPTGRILPL------ 531 Query: 23633 NRTRRQAAERTAINAPMQGTAADIIKLAMIDVDRWLREGDFDAWMVMQVHDELVFEVKEA 23812 +R R A +N Q TA D++ AMI+ +R+ +M + +HDE+VF ++ Sbjct: 532 DRNRMYA----VVNYKCQSTARDVLGQAMIN----MRDAGLLEYMKLPIHDEIVFSAPKS 583 Query: 23813 QVDAFTDAVRQRMEGAAKLD---VPLTVEANAG 23902 + + E +D VP+ EA+ G Sbjct: 584 D----AQDIAREFERCMTMDLFGVPVVAEADLG 612 >ref|NP_040579.1|G IV protein Length = 437 Score = 81.3 bits (199), Expect = 2e-14 Identities = 100/435 (22%), Positives = 188/435 (43%), Gaps = 30/435 (6%) Frame = +2 Query: 95834 EPISLNFQNIQVREVLSVLSDFSGLNIVASDSVQGSVTL---NLQQVPWDQALALILQSH 96004 +P++LN N VR + S S +V + V+G++T+ ++ Q D +L ++ Sbjct: 31 DPVNLN--NAPVRSFVQWYSQKSNKAVVVNPDVKGNITVFNADVNQANIDDFFKSVLNAN 88 Query: 96005 GLASRRNGDVIVVAPVDELAQMERQTLENRAQSEQLAPLVTDY-VQVRYAKATDLAAM-- 96175 G GD V+ +L + ++ S P+ V + K DL Sbjct: 89 GFVLMA-GDPSGVSTPSKLPSQQTDNDDDYEDSADYVPVGDSVPVSAQPQKPLDLTVRNF 147 Query: 96176 ----LRGSEGFGLL-----SERGRVTVD-ERTNTLLVRDTREQLASIRGMLERLDVPVRQ 96325 +R S+ L S G +D N+LLV + + ++ + +DV Q Sbjct: 148 KLTRVRSSDVLPLAKIFVDSNGGGDVIDYPGNNSLLVSGSAAIMNALADFITSIDVARDQ 207 Query: 96326 VQIEARIVIARDTASRELGVNWGISQRQGVT--FDDDGVGSVVDRNPSGANRXXXXXXXX 96499 V I++ + +L G + V F+ +G+ + + +G + Sbjct: 208 VLIQSLMFETSLVNGVDLSFAAGSASGDKVAGGFNTSALGTAL--STAGGS--------- 256 Query: 96500 XXXXXXXXXXXXXXYLSGDVLLDLELRALESEGKSQTISQPKVITANQKTAVIKQGQEIP 96679 +G+VL L ++A++++ S+ IS P+++T + +T I GQ +P Sbjct: 257 ------------FGIFNGNVLA-LSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQNVP 303 Query: 96680 YQESTSSG-ATNV-------EFKEAVLSLEATPQITPDGSIVMDLLINNDTVADNSYDGA 96835 + +G A NV E ++ +SL+ TP + +G +V+ + DT AD+ Sbjct: 304 FVTGKVTGEAANVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTI----DTKADSLTSQM 359 Query: 96836 PAID--TNS--IETQVLVDDGATVVLGGILTSEQLRNLYKTPFLGDLPLIGSLFRYTQES 97003 A D TN ++T V + DG T++LGG++ S P+ +P+IG LFR +S Sbjct: 360 TASDIITNQRHMQTTVQIKDGQTLLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDS 419 Query: 97004 NEKVELLIFITPTII 97048 + + + + +T +I Sbjct: 420 HNERTMFVLLTAHVI 434 >ref|YP_024841.1|Pas55 Length = 1415 Score = 79.7 bits (195), Expect = 6e-14 Identities = 153/635 (24%), Positives = 251/635 (39%), Gaps = 73/635 (11%) Frame = +2 Query: 22238 DIVGIGLSLDAGEAAYIPVAHRY--LDAPEQLDRASVLAALKPLWEDPAKAKIGQN---- 22399 D+ L E Y+ Y + A DR + + ED A A+I Q Sbjct: 823 DVATFDLETGDAERLYVEDGQAYVRIGAVAHDDRPVIELGGSTVAEDVA-ARIRQGATIT 881 Query: 22400 ----LKYDISVLAR---------YDIEVAGRLEDTMLASYVLNATATR---------HDM 22513 + +D+ L R +D+ GRL D +LA+ +L+ R +D+ Sbjct: 882 GHNIMAFDLPALVRAEAMTMDEIHDLADEGRLFDGLLAARLLDPPMARDKGVDATRKYDL 941 Query: 22514 DSLALKY-LGEKTISFEEIAGKGAKQLTFD--QIALEQAAP-------------YACEDV 22645 +LA+ Y LGEK + +++ AK+ D QI ++ P Y +D Sbjct: 942 GTLAVSYGLGEK---YTDLSKPLAKKYGGDWGQIPVDTDDPDPERAEDARLFRTYMVQDA 998 Query: 22646 DITLRLHRELRPRVDG--------EGRLAAVLDDIE----LPLVPVLSRMERNGVALDAE 22789 +++ RLH L + G E R+AA+ I L P+L+ AE Sbjct: 999 ELSRRLHARLLEELGGTVPEYLTREHRVAALAAQIRHNGFLVDQPLLTERVAEVDQRKAE 1058 Query: 22790 RLHAQSXXXXXXXXXXXXXAYE-----LAGREFNLGSPKQLGEILFDELKIPVIKKTPK- 22951 L + AY+ G+E + + G F +TP Sbjct: 1059 SLAWLAEHAGVPLANAKGVAYKSPLASTGGKEALEAALRAAGATSF--------WRTPNS 1110 Query: 22952 GAPSTAEAVLEELALDYP-LPKV--IIEHR----GFAKLKSTYTDKLPQLVNATTRRLHT 23110 G T+ ++ LA +Y LPKV I +H G + T D + + R+H Sbjct: 1111 GQFDTSGEHMKHLAREYHHLPKVREIAKHVFRIVGARSVYQTLMDNM-----SPDGRVHP 1165 Query: 23111 S--YHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQA-FVARPGYRIVAADYSQIELRIM 23281 + QA TGR S + P L + R GR + +A + PG +++AD SQ+++R + Sbjct: 1166 KIGFDQA---TGRWSVTRPGLTVLGKRG--GRHVERAVLLPDPGEVLMSADLSQVDMRAV 1220 Query: 23282 AHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSAWGLG 23461 A LS D ++ + D H A E+FG A ++R AKAI G YG + Sbjct: 1221 AGLSQDLAYIEMLKKD-DPHAEIAKELFGTA------DRREEAKAIGHGWNYGRGIKAIS 1273 Query: 23462 RQLHIERNQAQTYIDRYFDRYPGVARFMERIRAQAADDGYVETVFGRRLYLPEINAQNRT 23641 IE + + +R+ + + +RA A ++ FGR + R Sbjct: 1274 EGQEIEPALVRRFDASMRERFGRLVEWQTEVRAVAEAGQLLDNGFGRLM---------RA 1324 Query: 23642 RRQAAERTAINAPMQGTAADIIKLAMIDVDRWLREGDFDAWMVMQVHDELVFEVKEAQVD 23821 Q A QG A DI+ ++ +DR + + Q+HDE+VF V A+ + Sbjct: 1325 DPQRAHTQGPALMGQGAARDIMMTGLLRLDRRIL-----PMLRAQIHDEIVFSVPVAEAE 1379 Query: 23822 AFTDAVRQRMEGAAKLDVPLTVE-ANAGDNWDEAH 23923 AV + + + VP+ + + G +W + Sbjct: 1380 EVGRAVVEALSFEWR-GVPILADVSKTGTDWSRCY 1413 >ref|NP_858986.1|DNA polymerase lacking N-terminal exonuclease domain Length = 794 Score = 79.0 bits (193), Expect = 1e-13 Identities = 73/296 (24%), Positives = 124/296 (41%), Gaps = 46/296 (15%) Frame = +2 Query: 23102 LHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFVAR-PGYRIVAADYSQIELRI 23278 +H T TGRLSS+ PNLQN+P + +++ FV+R PG IV +D++ +E+ + Sbjct: 441 VHHQLQMVNTVTGRLSSALPNLQNLP--KGDKSEVKTLFVSRFPGGFIVQSDFTALEIYV 498 Query: 23279 MAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALD--------------AVSGEQRRSAKA 23416 +LSGD L+ G D+H A+ GV+ D V +R AK Sbjct: 499 QGNLSGDIALIADLRAGLDMHCKRLAQKEGVSYDYVFERAKDKKHIEYIVWNSKRSKAKG 558 Query: 23417 INFGLIYGMSAWGLGRQLHIERNQAQTYIDRYFDRYPGVARFMERIRAQAADD------- 23575 +F YG A + + ++ + I + YPG+ + +R + + Sbjct: 559 FSFQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTMKELERNLIPSKMY 618 Query: 23576 ---------------GYVETVFGRRLYLPEINA------QNRTRRQAAERTAINAPMQGT 23692 Y T G+R + + A + + + T N P+QGT Sbjct: 619 IASSYEAGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFSSTTTKNYPVQGT 678 Query: 23693 AADIIKLAM-IDVDRWLREGDFD--AWMVMQVHDELVFEVKEAQVDAFTDAVRQRM 23851 + +K AM + V +W G+F + +V VHD A +D+ + ++ M Sbjct: 679 GGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHD-------AAYIDSAPEVAKESM 727 >ref|YP_164688.1|recombinase A Length = 405 Score = 79.0 bits (193), Expect = 1e-13 Identities = 80/298 (26%), Positives = 132/298 (44%), Gaps = 27/298 (9%) Frame = +1 Query: 113836 VGGLPM-GRVVEIFGPESSGKTTMTLSVIAQGQKQGKTCAFIDAEHALDPTYAEKLGVNL 114012 V G+P GRV E+FG SSGK+T+ V+ K + D E +D E LGV+ Sbjct: 46 VSGIPSSGRVTEVFGLPSSGKSTLMGLVMKNALKMNVIPIYFDVEETMDSERLEGLGVDP 105 Query: 114013 DDLLVSQPDTGEQ----ALEICDMLXXXXXXXXXXXXXXAALTP------------RAEI 114144 ++ P+ + L I ++ + LT + E Sbjct: 106 SKVITVTPEINKDNTVTPLYIEEITNYIVNMAAKIHSQSSELTSMFIIDSVGFTQSKLEA 165 Query: 114145 EGEMGDSHVGLQARLMSQALRKVTGNIKNANCMVMFVNQIR--MKIGVMFGNPETTTGGN 114318 + + VG QA+ ++ RKV N+ N M++ +NQ R MK + GG Sbjct: 166 NTDSESATVGQQAKALAIMARKVQANLSYNNGMLIGLNQGRDDMKAPNPKYAQTKSLGGK 225 Query: 114319 ALKFYSSVRLDIRRTGSVKQGD---EAIGNETRVKVVKNKVAPPFRQA-EFQILYGKGIY 114486 + ++S RL I++T ++K + A+G +T+V VVK+KV A ++L +G Sbjct: 226 GWEHFTSSRLRIQKTTAIKMHNSDKNAVGFDTKVTVVKSKVGDNVTDAVTIKLLGARGFD 285 Query: 114487 HAGEVVDIGVQQGLVDKAGAWYSY---QGNKI-GQGKANAAQFLEDNPAIMEEIENEI 114648 + GV +G++ K WY+Y G +I QG + +L+ + +E NEI Sbjct: 286 RETNIFYGGVDEGII-KGSGWYTYVNDDGEQIKKQGWVDFVSYLKSDEG--KETANEI 340 >ref|NP_076827.1|Csp Length = 66 Score = 78.2 bits (191), Expect = 2e-13 Identities = 34/61 (55%), Positives = 46/61 (75%) Frame = +2 Query: 31517 GEVKWFNVNKGYGFITRDSGEDVFVHFRAIRGKGHRTLAEGQKVRYHVVENERGLQADDV 31696 G VKWFN +KG+GFIT + G+D+F HF AI+ G ++L EGQKV + V E +RGLQA ++ Sbjct: 4 GTVKWFNADKGFGFITSEEGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQAVNI 63 Query: 31697 T 31699 T Sbjct: 64 T 64 >ref|NP_817817.1|gp56 Length = 609 Score = 77.0 bits (188), Expect = 4e-13 Identities = 83/295 (28%), Positives = 127/295 (43%), Gaps = 4/295 (1%) Frame = +2 Query: 22940 KTPKGAPSTAEAVLEELALDYPLPKVIIEHRGFAKLKST--YTDKLPQLVNATTRRLHTS 23113 +TPKGAPS A+ LE LD+P V R A+ Y +K+ + A T R H Sbjct: 312 RTPKGAPSAAKEHLE--TLDHP---VAAAQRALAQSDKVLGYLEKVSRQA-AVTGRCHPQ 365 Query: 23114 YH-QAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFVARPGYRIVAADYSQIELRIMAHL 23290 +ATGR+S P LQ P K + + G + + D++QIE MA + Sbjct: 366 VAILGASATGRMSYGSPELQQFP-------KDARPIIVDDGQGLTSVDWAQIEPVTMALM 418 Query: 23291 SGDKGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQL 23470 +GD+ L F E A+++ + A G R AK I +YG A + R++ Sbjct: 419 AGDREFLAPFFE-------NDADLYEPIMRA-CGIDRPMAKVILLATMYGQGARSMARRI 470 Query: 23471 -HIERNQAQTYIDRYFDRYPGVARFMERIRAQAADDGYVETVFGRRLYLPEINAQNRTRR 23647 H E + AQ + P FM ++ + A G + T GR L + Sbjct: 471 GHTEESAAQIR-RQMLAAMPASRDFMAKVESIAITHGRIVTGGGRILPVD---------- 519 Query: 23648 QAAERTAINAPMQGTAADIIKLAMIDVDRWLREGDFDAWMVMQVHDELVFEVKEA 23812 Q A+N QG+A D++ ++ +D E + + +HDELV + A Sbjct: 520 QQGSYRAVNYICQGSAYDVLAHTIVRLD----EAGLSGHVQLAMHDELVVDTDVA 570 >ref|YP_164288.1|regulatory protein Length = 123 Score = 75.1 bits (183), Expect = 1e-12 Identities = 39/74 (52%), Positives = 50/74 (67%) Frame = +1 Query: 119566 MLILTRRVGETLMIGDDITVTVLGVKGNQVRIGVNAPKDVAVHREEIYQRIQREKTDSED 119745 MLILTRRVGETL IGDDITVTV+ +G Q+R+G+ AP+ +A+HR EIY R+ + S Sbjct: 1 MLILTRRVGETLHIGDDITVTVVENRGGQIRLGIVAPEAMAIHRAEIYARVGAVRPASPK 60 Query: 119746 DGSSV*TVTHAWNR 119787 D + WNR Sbjct: 61 D------LVEEWNR 68 >ref|NP_775225.1|DNA polymerase1 Length = 545 Score = 71.6 bits (174), Expect = 2e-11 Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 3/230 (1%) Frame = +2 Query: 23243 VAADYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAIN 23422 V D + +ELR++A GD +G D+HTA A R AK Sbjct: 331 VGYDGAGLELRMLASYIGDPDYTREVVDG-DVHTANQI--------AAGLPTRDDAKTFI 381 Query: 23423 FGLIYGMSAWGLGRQLHIERNQAQTYIDRYFDRYPGVARFMERIRAQAADDGYVETVFGR 23602 + IYG +G+ + R +++ P +A+ +ER++ Q A+ GY+ + GR Sbjct: 382 YAFIYGAGDAKIGQIIGGTRADGARLREQFLKANPELAKLIERVK-QEAERGYLVGLDGR 440 Query: 23603 RLYLPEINAQNRTRRQAAERTAINAPMQGTAADIIKLAMIDVDRWLREGDFDAWMVMQVH 23782 +L + + + A+N +Q A ++K AM+ +D +R AW V+ +H Sbjct: 441 KLTM-----RRSESGEVMVHKALNTLLQAAGAIVMKWAMVILDEKVRRAGLKAWKVLDIH 495 Query: 23783 DELVFEVKEAQVDAFTDAVRQRMEGAAKL---DVPLTVEANAGDNWDEAH 23923 DE +E + + ++ A ++ + PL ++ AG +W + H Sbjct: 496 DEGQWECHPEDLATLRGFMETCVKEAGEILGCNCPLASDSIAGRSWYDTH 545 >ref|NP_943839.1|gp61 Length = 619 Score = 69.7 bits (169), Expect = 6e-11 Identities = 91/355 (25%), Positives = 144/355 (40%), Gaps = 5/355 (1%) Frame = +2 Query: 22862 GREFNLGSPKQLGEILFDELKIPVI-KKTPKGAPSTAEAVLEELALDYPLPKVIIEHRGF 23038 G + G +L + L D ++P +TPKGA +A LE LA PL K + Sbjct: 295 GLDGGTGKGAKLVQYLADLGELPQPWPRTPKGALRATKADLEYLAEINPLAKAQLSLANI 354 Query: 23039 AKLKSTYTDKLPQLVNATTRRLHTSYHQ-AVTATGRLSSSDPNLQNIPIRTEEGRKIRQA 23215 K T Q A T R H +ATGR+S P LQ P K + Sbjct: 355 EKTLGYLTKVSTQA--AVTGRCHPQVATLGASATGRMSYGSPELQQFP-------KDARP 405 Query: 23216 FVARPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDAVSGE 23395 + G + + D+SQIE MA+++ D L A+ G D++ + +G Sbjct: 406 ILCDDGDGLTSIDWSQIEPVTMANMARDIDFLAAYEAGEDLYG---------PIMLAAGI 456 Query: 23396 QRRSAKAINFGLIYGMSAWGLGRQL-HIERNQAQTYIDRYFDRYPGVARFMERIRAQAAD 23572 R ++K + +YG L + H E + AQ + F A++M ++ AA Sbjct: 457 DRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQIK-RQMFAAMKRSAKWMVKVEEVAAQ 515 Query: 23573 DGYVETVFGRRLYLPEINAQNRTRRQAAERTAINAPMQGTAADIIKLAMIDVDRWLREGD 23752 G V T GR L + E A+N +QG+A D++ ++++ R G Sbjct: 516 FGRVITAGGRILPVDE----------GGIFKAVNYTVQGSAYDVLANTIVEM---YRRGM 562 Query: 23753 FDAWMVMQVHDELVFEVKEAQ--VDAFTDAVRQRMEGAAKLDVPLTVEANAGDNW 23911 D + + +HDE+V A + + + A + V T A+ G W Sbjct: 563 TDE-LYLAMHDEVVVSTPVAAEVQEIMSTPPEFLIRWAERTPVLRTDRADMGSQW 616 >ref|NP_570330.1|DNA polymerase Length = 587 Score = 68.9 bits (167), Expect = 1e-10 Identities = 77/286 (26%), Positives = 111/286 (38%), Gaps = 11/286 (3%) Frame = +2 Query: 23099 RLHTSYHQAV--TATGRLSSSDPNLQNIPIRTEEGRKIRQAFVARPGYRIVAADYSQIEL 23272 RLH H V T TGR + PNL +P + R F + V +D S +EL Sbjct: 330 RLH---HSCVLNTNTGRQAHMRPNLAQVP----SAHEYRSLFKPSDNHLQVGSDASGLEL 382 Query: 23273 RIMAHLSG--DKGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMS 23446 R + H D G DIHTA A E++G R+S K + + LIYG Sbjct: 383 RCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT--------DRKSGKGVTYCLIYGGG 433 Query: 23447 AWGLGRQLHIERNQA----QTYIDRYFDRYPGVARFMERIRAQAADDGYVETVFGRRLYL 23614 LG ++ A Q + G A I+ + A G ++ + GR + Sbjct: 434 NHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNAAIQ-ERAKSGVLKGLDGRPI-- 490 Query: 23615 PEINAQNRTRRQAAERTAINAPMQGTAADIIKLAMIDVDRWLREGDFDAWMVMQVHDELV 23794 R Q A+N +Q A I KL +I L+E D + + VHDE Sbjct: 491 ---------RLQGKNHAALNYLLQSAGAIICKLWVIRTHELLQEAGIDYYPLAFVHDEQQ 541 Query: 23795 FEVKEAQVD---AFTDAVRQRMEGAAKLDVPLTVEANAGDNWDEAH 23923 V+ Q + T + +E K L E G++W + H Sbjct: 542 LSVRADQAEMAAQLTTLAMKDVEHQVKFRCALDSEYQIGNSWADCH 587 >ref|NP_848283.1|DNA polymerase Length = 704 Score = 68.2 bits (165), Expect = 2e-10 Identities = 96/383 (25%), Positives = 154/383 (40%), Gaps = 32/383 (8%) Frame = +2 Query: 22871 FNLGSPKQLGEILFDELKIPVIKKTPKGAPSTAEAVLEELALDYPLPKVII----EHRGF 23038 FN S + + L + +P K T KGAP + VLE + +D P + I E+ Sbjct: 334 FNPSSRDHIQKKLQEAGWVPT-KYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 392 Query: 23039 AKL--KSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLSSSDPNLQNIP-IRTEEGRKIR 23209 K +S DK A ++H S + TGR + + PNL IP +R+ G + R Sbjct: 393 QKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCR 452 Query: 23210 QAFVAR------PGYRIVAA--DYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVF 23365 AF A G V A D S +ELR +AH + F G H ++ Sbjct: 453 AAFGAEHHLDEITGKPWVQAGIDASGLELRCLAH------FMARFDNGEYAHEILNGDIH 506 Query: 23366 GVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQTYIDRYFDRYPGVARFM 23545 A R +AK +G +YG +G+ + + + + ++ + P +A Sbjct: 507 TKNQIAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALR 566 Query: 23546 ERIRAQAADDGY----VETVFGRRLYLPEINAQNRTRRQAAERTAINAPMQGTAADIIKL 23713 E I+ + + V +R ++ ++ R + +A+N +Q A I KL Sbjct: 567 ESIQQTLVESSQWVAGEQQVKWKRRWIKGLD--GRKVHVRSPHSALNTLLQSAGALICKL 624 Query: 23714 AMIDVDRWLRE--------GDFDAWMVMQVHDEL-----VFEVKEAQVDAFTDAVRQRME 23854 +I + L E GDF A+M VHDE+ E+ + +D +A+R + Sbjct: 625 WIIKTEEMLVEKGLKHGWDGDF-AYMAW-VHDEIQVGCRTEEIAQVVIDTAQEAMRW-VG 681 Query: 23855 GAAKLDVPLTVEANAGDNWDEAH 23923 L E G NW H Sbjct: 682 DHWNFRCLLDTEGKMGPNWAVCH 704 >ref|NP_523322.1|gene 5B protein Length = 372 Score = 68.2 bits (165), Expect = 2e-10 Identities = 96/383 (25%), Positives = 154/383 (40%), Gaps = 32/383 (8%) Frame = +2 Query: 22871 FNLGSPKQLGEILFDELKIPVIKKTPKGAPSTAEAVLEELALDYPLPKVII----EHRGF 23038 FN S + + L + +P K T KGAP + VLE + +D P + I E+ Sbjct: 2 FNPSSRDHIQKKLQEAGWVPT-KFTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 60 Query: 23039 AKL--KSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLSSSDPNLQNIP-IRTEEGRKIR 23209 K +S DK A ++H S + TGR + + PNL IP +R+ G + R Sbjct: 61 QKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCR 120 Query: 23210 QAFVAR------PGYRIVAA--DYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVF 23365 AF A G V A D S +ELR +AH + F G H ++ Sbjct: 121 AAFGAEHHLDGITGKPWVQAGIDASGLELRCLAH------FMARFDNGEYAHEILNGDIH 174 Query: 23366 GVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQTYIDRYFDRYPGVARFM 23545 A R +AK +G +YG +G+ + + + + ++ + P +A Sbjct: 175 TKNQMAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALR 234 Query: 23546 ERIRAQAADDGY----VETVFGRRLYLPEINAQNRTRRQAAERTAINAPMQGTAADIIKL 23713 E I+ + + V +R ++ ++ R + A+N +Q A I KL Sbjct: 235 ESIQQTLVESSQWVAGEQQVKWKRRWIKGLD--GRKVHVRSPHAALNTLLQSAGALICKL 292 Query: 23714 AMIDVDRWLRE--------GDFDAWMVMQVHDEL-----VFEVKEAQVDAFTDAVRQRME 23854 +I + L E GDF A+M +HDE+ E+ + ++ +A+R E Sbjct: 293 WIIKTEEMLVEKGLKHGWDGDF-AYMAW-IHDEIQVACRTEEIAKTVIEVAQEAMRWVGE 350 Query: 23855 GAAKLDVPLTVEANAGDNWDEAH 23923 L E G NW E H Sbjct: 351 -HWNFRCLLDTEGKMGANWKECH 372 >ref|NP_523320.1|DNA polymerase Length = 704 Score = 68.2 bits (165), Expect = 2e-10 Identities = 96/383 (25%), Positives = 154/383 (40%), Gaps = 32/383 (8%) Frame = +2 Query: 22871 FNLGSPKQLGEILFDELKIPVIKKTPKGAPSTAEAVLEELALDYPLPKVII----EHRGF 23038 FN S + + L + +P K T KGAP + VLE + +D P + I E+ Sbjct: 334 FNPSSRDHIQKKLQEAGWVPT-KFTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 392 Query: 23039 AKL--KSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLSSSDPNLQNIP-IRTEEGRKIR 23209 K +S DK A ++H S + TGR + + PNL IP +R+ G + R Sbjct: 393 QKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCR 452 Query: 23210 QAFVAR------PGYRIVAA--DYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVF 23365 AF A G V A D S +ELR +AH + F G H ++ Sbjct: 453 AAFGAEHHLDGITGKPWVQAGIDASGLELRCLAH------FMARFDNGEYAHEILNGDIH 506 Query: 23366 GVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQTYIDRYFDRYPGVARFM 23545 A R +AK +G +YG +G+ + + + + ++ + P +A Sbjct: 507 TKNQMAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALR 566 Query: 23546 ERIRAQAADDGY----VETVFGRRLYLPEINAQNRTRRQAAERTAINAPMQGTAADIIKL 23713 E I+ + + V +R ++ ++ R + A+N +Q A I KL Sbjct: 567 ESIQQTLVESSQWVAGEQQVKWKRRWIKGLD--GRKVHVRSPHAALNTLLQSAGALICKL 624 Query: 23714 AMIDVDRWLRE--------GDFDAWMVMQVHDEL-----VFEVKEAQVDAFTDAVRQRME 23854 +I + L E GDF A+M +HDE+ E+ + ++ +A+R E Sbjct: 625 WIIKTEEMLVEKGLKHGWDGDF-AYMAW-IHDEIQVACRTEEIAKTVIEVAQEAMRWVGE 682 Query: 23855 GAAKLDVPLTVEANAGDNWDEAH 23923 L E G NW E H Sbjct: 683 -HWNFRCLLDTEGKMGANWKECH 704 >ref|NP_041982.1|DNA polymerase Length = 704 Score = 65.9 bits (159), Expect = 8e-10 Identities = 95/383 (24%), Positives = 153/383 (39%), Gaps = 32/383 (8%) Frame = +2 Query: 22871 FNLGSPKQLGEILFDELKIPVIKKTPKGAPSTAEAVLEELALDYPLPKVII----EHRGF 23038 FN S + + L + +P K T KGAP + VLE + +D P + I E+ Sbjct: 334 FNPSSRDHIQKKLQEAGWVPT-KYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 392 Query: 23039 AKL--KSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLSSSDPNLQNIP-IRTEEGRKIR 23209 K +S DK A ++H S + TGR + + PNL IP +R+ G + R Sbjct: 393 QKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCR 452 Query: 23210 QAFVAR------PGYRIVAA--DYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVF 23365 AF A G V A D S +ELR +AH + F G H ++ Sbjct: 453 AAFGAEHHLDGITGKPWVQAGIDASGLELRCLAH------FMARFDNGEYAHEILNGDIH 506 Query: 23366 GVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQTYIDRYFDRYPGVARFM 23545 A R +AK +G +YG +G+ + + + + ++ + P +A Sbjct: 507 TKNQIAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALR 566 Query: 23546 ERIRAQAADDGY----VETVFGRRLYLPEINAQNRTRRQAAERTAINAPMQGTAADIIKL 23713 E I+ + + V +R ++ ++ R + A+N +Q A I KL Sbjct: 567 ESIQQTLVESSQWVAGEQQVKWKRRWIKGLD--GRKVHVRSPHAALNTLLQSAGALICKL 624 Query: 23714 AMIDVDRWLRE--------GDFDAWMVMQVHDEL-----VFEVKEAQVDAFTDAVRQRME 23854 +I + L E GDF A+M VHDE+ E+ + ++ +A+R + Sbjct: 625 WIIKTEEMLVEKGLKHGWDGDF-AYMAW-VHDEIQVGCRTEEIAQVVIETAQEAMRW-VG 681 Query: 23855 GAAKLDVPLTVEANAGDNWDEAH 23923 L E G NW H Sbjct: 682 DHWNFRCLLDTEGKMGPNWAICH 704 >ref|NP_052094.1|5B protein Length = 384 Score = 65.1 bits (157), Expect = 1e-09 Identities = 90/364 (24%), Positives = 147/364 (40%), Gaps = 35/364 (9%) Frame = +2 Query: 22937 KKTPKGAPSTAEAVLEELALDYPLPKVII----EHRGFAKL--KSTYTDKLPQLVNATTR 23098 K T KGAP + VLE + +D P + I E+ K ++ DK Sbjct: 35 KFTEKGAPVVDDEVLEHVRVDDPEKQACIDLIKEYLMIQKRIGQAAEGDKAWLRYVQDDG 94 Query: 23099 RLHTSYHQAVTATGRLSSSDPNLQNIP-IRTEEGRKIRQAFVAR------PGYRIVAA-- 23251 ++H + + TGR + S PNL +P +R+ G + R AF A G V A Sbjct: 95 KIHGAVNPNGAVTGRATHSFPNLAQVPGVRSPYGEQCRSAFGAEHHLDGITGKPWVQAGI 154 Query: 23252 DYSQIELRIMAHLSG--DKGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINF 23425 D S +ELR +AH D G DIHT +A R +AK + Sbjct: 155 DASGLELRCLAHFMARFDNGEYANEILNGDIHTKNQ--------NAAELPTRDNAKTFIY 206 Query: 23426 GLIYGMSAWGLGRQLHIERNQAQTYIDRYFDRYPGVARFMERIRAQAADD----GYVETV 23593 G +YG +G+ + + + + ++ + P +A E I+ + G + V Sbjct: 207 GFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALREAIQQSLVNSSAWIGGEQKV 266 Query: 23594 FGRRLYLPEINAQNRTRRQAAERTAINAPMQGTAADIIKLAMID-----VDRWLREG-DF 23755 +R ++ ++ R + A+N +Q A I KL +I +++ L+ G D Sbjct: 267 QWKRRWIKGLD--GRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLIEKGLKHGWDG 324 Query: 23756 DAWMVMQVHDELVF-----EVKEAQVDAFTDAVR---QRMEGAAKLDVPLTVEANAGDNW 23911 D + +HDE+ EV + V+ +A+R + +LD E G NW Sbjct: 325 DFAQMGWIHDEVQIACRTEEVAKVVVEVAQEAMRWVGEHWNFRCRLD----TEGKIGPNW 380 Query: 23912 DEAH 23923 H Sbjct: 381 AVCH 384 >ref|NP_052093.1|DNA polymerase Length = 704 Score = 65.1 bits (157), Expect = 1e-09 Identities = 90/364 (24%), Positives = 147/364 (40%), Gaps = 35/364 (9%) Frame = +2 Query: 22937 KKTPKGAPSTAEAVLEELALDYPLPKVII----EHRGFAKL--KSTYTDKLPQLVNATTR 23098 K T KGAP + VLE + +D P + I E+ K ++ DK Sbjct: 355 KFTEKGAPVVDDEVLEHVRVDDPEKQACIDLIKEYLMIQKRIGQAAEGDKAWLRYVQDDG 414 Query: 23099 RLHTSYHQAVTATGRLSSSDPNLQNIP-IRTEEGRKIRQAFVAR------PGYRIVAA-- 23251 ++H + + TGR + S PNL +P +R+ G + R AF A G V A Sbjct: 415 KIHGAVNPNGAVTGRATHSFPNLAQVPGVRSPYGEQCRSAFGAEHHLDGITGKPWVQAGI 474 Query: 23252 DYSQIELRIMAHLSG--DKGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINF 23425 D S +ELR +AH D G DIHT +A R +AK + Sbjct: 475 DASGLELRCLAHFMARFDNGEYANEILNGDIHTKNQ--------NAAELPTRDNAKTFIY 526 Query: 23426 GLIYGMSAWGLGRQLHIERNQAQTYIDRYFDRYPGVARFMERIRAQAADD----GYVETV 23593 G +YG +G+ + + + + ++ + P +A E I+ + G + V Sbjct: 527 GFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALREAIQQSLVNSSAWIGGEQKV 586 Query: 23594 FGRRLYLPEINAQNRTRRQAAERTAINAPMQGTAADIIKLAMID-----VDRWLREG-DF 23755 +R ++ ++ R + A+N +Q A I KL +I +++ L+ G D Sbjct: 587 QWKRRWIKGLD--GRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLIEKGLKHGWDG 644 Query: 23756 DAWMVMQVHDELVF-----EVKEAQVDAFTDAVR---QRMEGAAKLDVPLTVEANAGDNW 23911 D + +HDE+ EV + V+ +A+R + +LD E G NW Sbjct: 645 DFAQMGWIHDEVQIACRTEEVAKVVVEVAQEAMRWVGEHWNFRCRLD----TEGKIGPNW 700 Query: 23912 DEAH 23923 H Sbjct: 701 AVCH 704 >ref|NP_877458.1|putative DNA directed DNA polymerase Length = 807 Score = 63.5 bits (153), Expect = 4e-09 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 24/179 (13%) Frame = +2 Query: 23102 LHTSYHQAVTATGRLSSSDPNLQNIPIRTEE----GRKIRQAFVARPGY--RIVAADYSQ 23263 +H S + TAT RLSSS PNLQ +P + E+ G ++++ FV+R G I DY+ Sbjct: 460 IHHSLNTTATATTRLSSSRPNLQQLPSKDEDDPEAGSRVKEMFVSRFGADGMIGETDYTA 519 Query: 23264 IELRIMAHLSGDKGLLDAFAEGRDIHTATAA------------EVFGVALD------AVS 23389 +E+ ++A LS D+ LL G D+H A ++ + D Sbjct: 520 LEVVMLAALSKDRNLLAKLMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNHPWHGRM 579 Query: 23390 GEQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQTYIDRYFDRYPGVARFMERIRAQA 23566 + R++ K F YG SA G+ +AQ ++D +P F + +R A Sbjct: 580 MQARKNIKPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIAFRQIVRDSA 638 >ref|YP_195169.1|RecA-like recombination protein Length = 343 Score = 58.2 bits (139), Expect = 2e-07 Identities = 67/320 (20%), Positives = 129/320 (40%), Gaps = 15/320 (4%) Frame = +1 Query: 113749 GAVMRLGDTPRVATPAISTGSLGLDIALGVGGLPMGRVVEIFGPESSGKTTMTLSVIAQ- 113925 G V DT A+ +GS+ GG+P ++ + G +GKT LSV+ Sbjct: 26 GDVESFVDTGSYIFNALVSGSI-------FGGIPSNKITALAGESGTGKTFFCLSVVRNF 78 Query: 113926 -GQKQGKTCAFIDAEHALDPTYAEKLGVNLDDLLVSQPDTGE----QALEICDML----X 114078 + + E A+ E G++ +++ DT E QA+ I D Sbjct: 79 LNTDPDAGVIYFETESAISKQMIESRGIDSTRMIIFPVDTIEDFRTQAVRIIDKYMEQNK 138 Query: 114079 XXXXXXXXXXXXXAALTPRAEIEGEMGDSHVG--LQARLMSQALRKVTGNIKNANCMVMF 114252 L + E+E D V +A+++ A R +T + AN ++ Sbjct: 139 SERKPLMFVLDSLGMLATKKEVEDASNDKQVRDMTKAQIVKSAFRILTLKMGKANIPMLV 198 Query: 114253 VNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKQGDEAIGNETRVKVVKNKV 114432 N +G E GG+ LK+ +S + + + K G + +GN + + K+++ Sbjct: 199 TNHTYDVVGSYVPTKE-MGGGSGLKYSASTIVYLGKK-KEKDGTDLVGNIIKCEAKKSRL 256 Query: 114433 APPFRQAEFQILYG-KGIYHAGEVVDIGVQQGLVDKAGAWYSYQGNKI--GQGKANAAQF 114603 + E ++ + +G+ ++++G + GL Y G K+ Q AN +F Sbjct: 257 TREGSKVETRLFFDQRGLERYYGMLELGERAGLWKNTAGRYEINGKKVYGKQILANPDEF 316 Query: 114604 LEDNPAIMEEIENEIRARLL 114663 + I++E++ + + L Sbjct: 317 FTEE--ILQELDKQAQREFL 334 >ref|NP_853574.1|gp14 Length = 849 Score = 55.1 bits (131), Expect = 1e-06 Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 6/225 (2%) Frame = +2 Query: 23162 NLQNIPIRTEEGRKIRQAFVARPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEGRDIH 23341 N+ NIP R +R F+A G I+ D + +ELR+++H D + G DIH Sbjct: 542 NVVNIPARGLY--PLRDLFIAGKGKMILGCDGAGLELRVLSHFMNDPEYQEIVLHG-DIH 598 Query: 23342 TATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQTYIDRYFDR 23521 T + +R AK + +YG L + ++ + + R+ Sbjct: 599 THNQLK--------AGLPKRDMAKTFIYAFLYGSGIANLAAVCGVTEDEMKEVVARFEIE 650 Query: 23522 YPGVARFMERIRAQAADDGYVETVFGRRLYLPEINAQNRTRRQAAERTAINAPMQGTAAD 23701 P +AR E + A GY++ G + + E T +N +Q T + Sbjct: 651 LPSLARLRENVIAAGNKFGYLQAPDG------HWGRIRMSGGELKEHTMLNVLLQMTGSL 704 Query: 23702 IIKLAMIDVDRWLREGDF------DAWMVMQVHDELVFEVKEAQV 23818 +K A++ +R + V VHDE+ EV E +V Sbjct: 705 CMKYALVKAFAVMRREGVALDNLGNPCGVANVHDEIQMEVPEEEV 749 >ref|NP_705685.1|gp62 Length = 655 Score = 54.3 bits (129), Expect = 3e-06 Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 49/248 (19%) Frame = +2 Query: 23207 RQAFVA-RPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDA 23383 RQ F A +PG+ +V AD S IE R+ L+ D L+AF +G D + A +++ + DA Sbjct: 374 RQLFRATKPGHVLVGADLSGIEARVAPWLANDVPKLEAFEKGIDGYKLAAMDIYSIEYDA 433 Query: 23384 VSGEQRRSAKAINFGLIYG-----MSAWGLGRQLHIERNQAQTYIDRY------FDRY-- 23524 V+ +QR+ KA + L +G ++ +H+ Q + + F+R+ Sbjct: 434 VTKDQRQVGKAADLALGFGGGDGAFASMAANYGVHLPPEQVSEIVYNWRAGRPAFERWWS 493 Query: 23525 ------------PGVARFMERIRAQAADDGYVETVFGRRLYLPEINAQNRTRRQAAERTA 23668 PG M R + +V+ R++LP A + + Sbjct: 494 LCEYSVLMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLEPG 553 Query: 23669 INAPM-----------------------QGTAADIIKLAMIDVDRWLREGDFDAWMVMQV 23779 N P+ QG A D+ ++DVDR + E +V V Sbjct: 554 ANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDR-VEE------IVHHV 606 Query: 23780 HDELVFEV 23803 +DE + EV Sbjct: 607 YDEALLEV 614 >ref|NP_861734.1|UvsX RecA-like recombination protein Length = 390 Score = 53.1 bits (126), Expect = 6e-06 Identities = 73/334 (21%), Positives = 131/334 (39%), Gaps = 11/334 (3%) Frame = +1 Query: 113689 DNRSKALNAALSQIERQFGKGAVMRLGDTPRVATPAISTGSLGLDIALGVG---GLPMGR 113859 D +S+ + A+ S++ K + D P L+IALG GL G Sbjct: 3 DLKSRLIKASTSKMTADLTKSKLFNNRDEVPTRIPM-------LNIALGGALNAGLQSGL 55 Query: 113860 VVEIFGPESSGKTTMTLSVIAQGQKQGKT--CAFIDAEHALDPTYAEKLGVNLDDLLVSQ 114033 + P KT L+++A K+ K C F D+E +Y +GV+LD ++ + Sbjct: 56 TI-FAAPSKHFKTLFGLTMVAAYMKKYKDAICLFYDSEFGASESYFRSMGVDLDRVVHTP 114 Query: 114034 PDTGEQ-ALEICDMLXXXXXXXXXXXXXXAA--LTPRAEIEGEMGDSHVG--LQARLMSQ 114198 + EQ +++ + L + + E E + + VG +A+ + Sbjct: 115 IQSVEQLKVDMTNQLDAIERGDKVIIFIDSIGNTASKKETEDALNEKVVGDMSRAKALKS 174 Query: 114199 ALRKVTGNIKNANCMVMFVNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKQ 114378 R VT + + + +N M+IG ++ P+ GG YS+ + VK+ Sbjct: 175 LFRIVTPYLTIKDIPCVAINHTAMEIGGLY--PKEIMGGGTGILYSANTVFFISKRQVKE 232 Query: 114379 GDEAIGNETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDIGVQQGLVDKAGA-WYS 114555 G E G + +K K++ + + GI ++++ + G V K A WY Sbjct: 233 GTELTGYDFTLKAEKSRTVKEKSTFPITVNFDGGIDPFSGLLEMATEIGFVVKPKAGWY- 291 Query: 114556 YQGNKIGQGKANAAQFLEDNPAIMEEIENEIRAR 114657 A +FL++ M E RA+ Sbjct: 292 ------------AREFLDEETGEMIREEKSWRAK 313 >ref|NP_919002.1|putative DNA polymerase I Length = 693 Score = 53.1 bits (126), Expect = 6e-06 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 14/133 (10%) Frame = +2 Query: 23204 IRQAFVARPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDA 23383 +R A A GY V D S IE ++A L+ + LL+ F EGR + A ++GV Sbjct: 385 VRSAIYAPEGYEFVTCDLSSIETVVIAWLADCQPLLNVFREGRCAYREFATRLYGVEYPE 444 Query: 23384 VSGEQRRSAKAINFGLIYGMSA------------WGLGRQLHIE--RNQAQTYIDRYFDR 23521 V+ + R +K G Y + WG + I+ R +A + Y + Sbjct: 445 VTSQMRTMSKPAVLGAGYRLGGGDLSHEGKRTGLWGYAENMGIDMSRQEAHDSVKMYREA 504 Query: 23522 YPGVARFMERIRA 23560 YP V + + + A Sbjct: 505 YPEVPQLWKDLEA 517 >ref|NP_795675.1|putative DNA polymerase A domain Length = 640 Score = 52.8 bits (125), Expect = 7e-06 Identities = 25/78 (32%), Positives = 45/78 (57%) Frame = +2 Query: 23204 IRQAFVARPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDA 23383 +R A VA+ G +D+S IE R++A +G++ LD F+ I+ A+A+++FG+ ++ Sbjct: 369 VRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGKIYEASASQMFGIPIEE 428 Query: 23384 VSGEQRRSAKAINFGLIY 23437 + E R+ K L Y Sbjct: 429 IDKELRQKGKISELALGY 446 >ref|NP_958166.1|gp61 Length = 656 Score = 52.8 bits (125), Expect = 7e-06 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Frame = +2 Query: 23207 RQAFVA-RPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDA 23383 RQ F A +PG+ +V AD S IE R+ L+ D L+AF +G D + A +++ + DA Sbjct: 375 RQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKLEAFEKGIDGYKLAAMDIYSIEYDA 434 Query: 23384 VSGEQRRSAKAINFGLIYG 23440 V+ +QR+ KA + L +G Sbjct: 435 VTKDQRQVGKAADLALGFG 453 >ref|NP_049656.2|UvsX RecA-like recombination protein Length = 391 Score = 52.4 bits (124), Expect = 1e-05 Identities = 68/331 (20%), Positives = 131/331 (39%), Gaps = 8/331 (2%) Frame = +1 Query: 113689 DNRSKALNAALSQIERQFGKGAVMRLGDTPRVATPAISTGSLGLDIALGVGGLPMGRVVE 113868 D +S+ + A+ S++ + D R P ++ G +I GG+ G ++ Sbjct: 3 DLKSRLIKASTSKLTAELTASKFFNEKDVVRTKIPMMNIALSG-EIT---GGMQSGLLI- 57 Query: 113869 IFGPESSGKTTMTLSVIAQGQKQ--GKTCAFIDAEHALDPTYAEKLGVNLDDLLVSQPDT 114042 + GP S K+ L++++ +Q C F D+E + P Y +GV+ + ++ + + Sbjct: 58 LAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQS 117 Query: 114043 GEQ-ALEICDMLXXXXXXXXXXXXXXAA--LTPRAEIEGEMGDSHVG--LQARLMSQALR 114207 EQ +++ + L + L + E E + + V +A+ M R Sbjct: 118 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFR 177 Query: 114208 KVTGNIKNANCMVMFVNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKQGDE 114387 VT N + +N + MF +T GG YS+ + I +K G + Sbjct: 178 IVTPYFSTKNIPCIAINH-TYETQEMFS--KTVMGGGTGPMYSADTVFIIGKRQIKDGSD 234 Query: 114388 AIGNETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDIGVQQGLVDK-AGAWYSYQG 114564 G + + V K++ + + + GI ++D+ ++ G V K WY Sbjct: 235 LQGYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYSGLLDMALELGFVVKPKNGWY---- 290 Query: 114565 NKIGQGKANAAQFLEDNPAIMEEIENEIRAR 114657 A +FL++ M E RA+ Sbjct: 291 ---------AREFLDEETGEMIREEKSWRAK 312 >ref|NP_803318.1|DNA polymerase A domain Length = 650 Score = 52.0 bits (123), Expect = 1e-05 Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 6/142 (4%) Frame = +2 Query: 23204 IRQAFVARPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDA 23383 +R F A G + +D+S IE R++A + ++ LD F I+ A+A+++F V +++ Sbjct: 374 VRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVES 433 Query: 23384 VS--GEQRRSAKAINFGLIYGMSAWGL----GRQLHIERNQAQTYIDRYFDRYPGVARFM 23545 ++ R+ K L Y A L ++ IE N+ Q +D + + P + F Sbjct: 434 ITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFW 493 Query: 23546 ERIRAQAADDGYVETVFGRRLY 23611 +A + + TV R+ + Sbjct: 494 -----KACQEAAINTVKSRKTH 510 >ref|NP_944374.1|gp66 Length = 655 Score = 51.2 bits (121), Expect = 2e-05 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Frame = +2 Query: 23207 RQAFVA-RPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDA 23383 RQ F A +PG+ +V AD S IE R+ L+ D L+AF +G D + A +++ + DA Sbjct: 374 RQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKLEAFEKGIDGYKLAAMDIYSIEYDA 433 Query: 23384 VSGEQRRSAKAINFGLIYG 23440 V+ +QR+ K + L +G Sbjct: 434 VTKDQRQVGKVADLALGFG 452 >ref|YP_006958.1|flap endonuclease Length = 291 Score = 46.2 bits (108), Expect = 7e-04 Identities = 62/290 (21%), Positives = 102/290 (35%), Gaps = 14/290 (4%) Frame = +2 Query: 21122 WHREFPMDADVMANTPPIVLVDGSSYLYRAFHALPPLTTSKGNPTGAVKGVLNMLKSLIK 21301 W + + MA+ +++VDG++ +R H + ++ ++SL K Sbjct: 5 WGKFIEEEEAEMASRRNLMIVDGTNLGFRFKH--------NNSKKPFASSYVSTIQSLAK 56 Query: 21302 QYPQSPMAVVFDAKGKTFRDDIYAEYKAHRPPMPDDLRPQVEPLHDC----------IRA 21451 Y V+ D FR + EYK +R + + L + + Sbjct: 57 SYSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCK 116 Query: 21452 LGLPLLCIEGVEADDVIGTLARQATEAGRDAVISTGDKDMAQLVNAHITLVNTMKGETLD 21631 P I GVEADD+ + + + + D D L+ ++ + Sbjct: 117 TTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFTTRREYH 176 Query: 21632 VAGVEEKFGIPP-SLVIDFLALMGDKVDNIPGVPGVGEKTAXXXXXXXXXXXDTIYADLE 21808 + + E + I A+MGD DNI GV G+G K D I Sbjct: 177 LRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDII----- 231 Query: 21809 RVTTLSFRGAKTMPKKLEANREQAFLSYQLATIKTDCE---LPVGLDDLD 21949 L G + + L A+ E F + L + T C VG D LD Sbjct: 232 --DQLPLPGKQKYIQNLNASEELLFRNLILVDLPTYCVDAIAAVGQDVLD 279 >ref|NP_046572.1|ABC transporter Length = 705 Score = 43.9 bits (102), Expect = 0.003 Identities = 22/58 (37%), Positives = 38/58 (65%) Frame = -1 Query: 8087 LSGGQQQRVAIARALAMEPRVLLFDEPTSALDPELVGDVLAVIQSLAEEGRTMLLVTH 7914 LS GQ+QR+A+ARA+ +P+VL+ DE S +DP+ + + ++L ++L+TH Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNIDPD---NTKLIYETLHRMDCLIILITH 673 >ref|NP_932573.1|RNaseH ribonuclease Length = 307 Score = 42.4 bits (98), Expect = 0.010 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 9/110 (8%) Frame = +2 Query: 21278 NMLKSLIKQYPQSPMAVVFDAKGKTFRDDIYAEYKAHRPPMPDDLRPQVEPLHDCIRAL- 21454 N +K +YP++ +A D+K +R D+ YK +R ++ + + L I + Sbjct: 55 NNVKKFKAEYPETIIAFD-DSKDGYWRRDLAWYYKKNRSISKEESKWDWDALFGFINKIV 113 Query: 21455 --------GLPLLCIEGVEADDVIGTLARQATEAGRDAVISTGDKDMAQL 21580 G+ ++ I EADD+I L + T+ GR +IS+ D D QL Sbjct: 114 DEMLTVYPGVKMIKIGKTEADDIIAILTKLFTDQGRCVMISSSDSDFTQL 163 >ref|NP_891595.1|UvsX Length = 356 Score = 42.0 bits (97), Expect = 0.013 Identities = 50/235 (21%), Positives = 92/235 (39%), Gaps = 8/235 (3%) Frame = +1 Query: 113875 GPESSGKTTMTLSVIAQGQKQGK--TCAFIDAEHALDPTYAEKLGVNLDDLL-VSQPDTG 114045 GP K+ M L+ ++ KQ C F D+E + Y E +GV+ D ++ V + Sbjct: 59 GPSKHFKSNMGLTCVSAYMKQNPDAACLFFDSEFGITSAYLESMGVDPDRVVHVPIKNIE 118 Query: 114046 EQALEICDMLXXXXXXXXXXXXXXAA--LTPRAEIEGEMGDSHVG--LQARLMSQALRKV 114213 E EI + L + L + E+E + + +A+ + R V Sbjct: 119 ELKFEIMNQLEQITREDKVIIFIDSIGNLASKKEVEDAINEKSAQDMTRAKALKGLFRMV 178 Query: 114214 TGNIKNANCMVMFVNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKQGDEAI 114393 T + + + +N + MF +T G YS+ + I K+G E Sbjct: 179 TPYLTMNDIPCIAINH-TYETQEMFS--KTVMSGGTGAMYSANEVFIIGRRQQKEGTEIT 235 Query: 114394 GNETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDIGVQQGLVDK-AGAWYS 114555 G + + K++ + + + GI ++++ V+ G V K + WYS Sbjct: 236 GYDFILNAEKSRTVKEKSKFPISVTFSGGIDPYSGLLELAVELGWVVKPSNGWYS 290 >ref|NP_813764.1|putative DNA polymerase Length = 709 Score = 41.6 bits (96), Expect = 0.017 Identities = 83/376 (22%), Positives = 133/376 (35%), Gaps = 49/376 (13%) Frame = +2 Query: 22943 TPKGAPSTAEAVLEELALDYPLPKVIIEHRGFAKLKSTYTDKLPQLVNATTR------RL 23104 T GAP + VLE + +D P + IE L L + NA + + Sbjct: 345 TDNGAPKVDDEVLEHVRVDDPEKQAAIE------LIQKRIGMLAEGDNAWIKLVGEDGAM 398 Query: 23105 HTSYHQAVTATGRLSSSDPNLQNIPIRTEE-GRKIRQAFVA-----RPGYR---IVAADY 23257 H S + TGR + + PN+ +P + G R F A R G+ V D Sbjct: 399 HGSINPNGAGTGRATHAYPNMGQVPSASATYGPHCRALFGATHAKKRRGWEKVVQVGTDA 458 Query: 23258 SQIELRIMAHLSG--DKGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQ------RRSAK 23413 S +ELR + H D+G DIH + D R AK Sbjct: 459 SGLELRCLGHYGAPFDEGRYADTVLNGDIHWVNGKAAGIIKFDERDKHNEEHERVRGIAK 518 Query: 23414 AINFGLIYGMSAWGLGRQLHIERNQAQTYIDRYFDRYPGVARFMERIRAQAADDGYVETV 23593 + +YG +G + + + + + + P ++ ++ AD E Sbjct: 519 TFIYAFLYGAGDELVGSFVGGGKKEGKALKKDFMENTPAIS----GLQGAIADQLITEQK 574 Query: 23594 FGRRLYLPEINAQNRTRRQAAER--------TAINAPMQGTAADIIKLAMIDVDRWLRE- 23746 + + +I + R R R +A+N +Q A I K +++V+R L E Sbjct: 575 WNQATRRFDIKWKRRWLRGLDGRKIHVRSPHSALNFLLQSAGAIICKKWVVEVERILMEE 634 Query: 23747 -GDFDAW-----------MVMQVHDELVF-----EVKEAQVDAFTDAVRQRMEGAAKLDV 23875 G + W + VHDEL E+ E A+R+ E + + Sbjct: 635 HGLYHGWYKDDGTPGDFCYMAWVHDELQIAARTPEIAEIVAKVAQQAIREVGE-SFQFRC 693 Query: 23876 PLTVEANAGDNWDEAH 23923 L + G W E H Sbjct: 694 QLDTDYKIGATWRECH 709 >ref|NP_891817.1|RnaseH ribonuclease Length = 315 Score = 41.6 bits (96), Expect = 0.017 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 8/102 (7%) Frame = +2 Query: 21299 KQYPQSPMAVVFDAKGKTFRDDIYAEYKAHRPPMPDDLRPQVEPLHDCIRAL------GL 21460 +QYP + +A FD+ +R DI YK +R D E + I + + Sbjct: 73 EQYPITVLA--FDSSKGYWRRDIAPYYKRNRKEKRDADPRDWEMIFAAINKITEEFKENM 130 Query: 21461 P--LLCIEGVEADDVIGTLARQATEAGRDAVISTGDKDMAQL 21580 P ++ ++ VEADD+I L ++ + GR +I++GD D QL Sbjct: 131 PYHVIKVDKVEADDIIAVLTKKFSVEGRQVLINSGDGDYTQL 172 >ref|NP_899249.1|RNaseH ribonuclease Length = 310 Score = 41.6 bits (96), Expect = 0.017 Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 8/155 (5%) Frame = +2 Query: 21278 NMLKSLIKQYPQSPMAVVFDAKGKTFRDDIYAEYKAHRPPMPDDLRPQVEPLHDCIRAL- 21454 N+LK+ IK YP+ + + + KG +R YK R D+ E + D + + Sbjct: 60 NVLKNKIK-YPRIILCID-NGKGGYWRKKEAWYYKFKRSEQRDESGWDFETIFDAMAQIK 117 Query: 21455 -----GLP--LLCIEGVEADDVIGTLARQATEAGRDAVISTGDKDMAQLVNAHITLVNTM 21613 +P ++ IEGVEADD IG L +I++ D D QL + + Sbjct: 118 DEIKQNMPYYVMDIEGVEADDHIGVLTNYYVSKNVPVLITSSDGDFTQLHTSKL----VS 173 Query: 21614 KGETLDVAGVEEKFGIPPSLVIDFLALMGDKVDNI 21718 + + V+ K G P + I + + GDK D I Sbjct: 174 QWSPIQKKWVKPKHG-SPEMDIMYKCIKGDKKDGI 207 >ref|NP_858984.1|5'-exonuclease similar to N-terminal domains of DNA polymerase I Length = 309 Score = 40.8 bits (94), Expect = 0.029 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 5/94 (5%) Frame = +2 Query: 21485 EADDVIGTLARQATEAGRDAVISTGDKDMAQLVNAHIT-----LVNTMKGETLDVAGVEE 21649 EADD I A + GR + + DKD H+ +V G T D + Sbjct: 139 EADDGIAYCTEAAYKLGRPGAVMSADKDFRMFAGVHVVWRTLQVVEITPG-TYDQMFAGK 197 Query: 21650 KFGIPPSLVIDFLALMGDKVDNIPGVPGVGEKTA 21751 ++G +MGD+ DNI G+PG GE A Sbjct: 198 QYG---HKFFWLQMIMGDQADNIVGLPGCGEVAA 228 >ref|YP_195220.1|RNase H Length = 287 Score = 40.8 bits (94), Expect = 0.029 Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 11/114 (9%) Frame = +2 Query: 21272 VLNMLKSLIKQYPQS--PMAVVFDAKGKTFRDDIYAEYKAHRPPMPD-------DLRPQV 21424 VLN L+S +QY + M + +D+K + +R DI+ YK +R + + + Sbjct: 32 VLNSLRSYERQYGEKYGEMVLAYDSK-QYWRKDIFPYYKQNRKKDRERSGHNWSSIFEVL 90 Query: 21425 EPLHDCIRALGLPLLCIE--GVEADDVIGTLARQATEAGRDAVISTGDKDMAQL 21580 + D IR L P +E G EADDVI TL + ++S GDKD QL Sbjct: 91 NKIRDEIRDL-FPYKVVEVLGAEADDVISTLCKNKGPKELILILS-GDKDFIQL 142 >ref|NP_944975.1|putative exodeoxyribonuclease Length = 348 Score = 40.8 bits (94), Expect = 0.029 Identities = 47/178 (26%), Positives = 70/178 (39%), Gaps = 28/178 (15%) Frame = +2 Query: 21467 LCIEGVEADDVIGTLARQATEAGRDAVISTGDKDMAQLVNAH-----------ITLVNTM 21613 L ++G EAD ++ +A + G+ A + + DKD+ Q + I + + Sbjct: 164 LILDGFEADSIV---IAKAEKMGKKAALMSIDKDLRQAEGTYCIDMTYEKSPLIFIADNN 220 Query: 21614 KGETLD-----------VAGVEEKFGIPPSLVIDFLALMGDKVDNIPGVPGVGEKT---A 21751 GE D GV KF + + A+ GD DN G+ GVG+ T A Sbjct: 221 VGEIWDCPIKSTPKAKKTVGVGFKF-------LCYQAVAGDNADNYFGLKGVGKVTIMKA 273 Query: 21752 XXXXXXXXXXXDTIY---ADLERVTTLSFRGAKTMPKKLEANREQAFLSYQLATIKTD 21916 D IY A E T +S+ G LE ++ FL+YQ K D Sbjct: 274 LEGKTTYKECLDAIYELYAKKESYTYVSWDGQTITRTPLELMQQHFFLAYQERNKKDD 331 >ref|NP_813767.1|putative exonuclease Length = 314 Score = 40.4 bits (93), Expect = 0.038 Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Frame = +2 Query: 21479 GVEADDVIGTLARQATEAGRDAVISTG-DKDMAQLVNAHITLVNTMKGETLDVAGVEEKF 21655 GVE DDV G L AG D VIS DKD V + + M+ D A +KF Sbjct: 129 GVEGDDVCGILMTNPGLAGCDRVISVSCDKDF-NTVPGYFFWLTQMELVKNDEA-TADKF 186 Query: 21656 GIPPSLVIDFLALMGDKVDNIPGVPGVGEKTA 21751 + +MGD D G+PGVG++TA Sbjct: 187 HM-------IQTMMGDVTDGYGGIPGVGKETA 211 >ref|NP_944210.1|RNaseH ribonuclease Length = 306 Score = 37.7 bits (86), Expect = 0.24 Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 10/103 (9%) Frame = +2 Query: 21299 KQYPQSPMAVVFDAKGKTFRDDIYAEYKAHRPPMPDDLRPQVEPLHDCIRALGLPL---- 21466 ++YP +AV A G +R Y YK HR E + D I+ + L Sbjct: 60 QEYPNIIIAVDNSADGGYWRRQKYYFYKKHREKDRQASDWDWESIFDSIKTVAYELRENL 119 Query: 21467 ----LCIEGVEADDVIGTLARQATEAGRDA--VISTGDKDMAQ 21577 L + EADD+IG L + E DA +I + D DM Q Sbjct: 120 PYKTLILPHTEADDIIGVLCKHFDEKFPDAPVLIVSSDGDMTQ 162 >ref|NP_817695.1|gp17 Length = 553 Score = 37.4 bits (85), Expect = 0.32 Identities = 38/131 (29%), Positives = 48/131 (36%), Gaps = 1/131 (0%) Frame = -3 Query: 66894 VHHARRAGQVDIVAGDVAVALGKHLVDAADVPRHAGRRAQRGLAVLDHGMHVEVGMRGGP 66715 V ARR Q + A AL L D P+H G A G V G H+ + P Sbjct: 431 VEPARRVPQRRVFRVPDAAALPAPLRHGPDAPQHRGHGADPGAPVQRRG-HLHIPRH--P 487 Query: 66714 FERQTFQVQVTGRLDCPPQPNRPRVIVGQRRLDDRLHLGESRPGGDQRQGTPTAGIEHA- 66538 V G +CP +P V VG R L R H+ + P A +H Sbjct: 488 VRHPRLHVSAGGSQECPVRP----VCVGARHLPRRPHVAD----------LPGARSDHRW 533 Query: 66537 ATIGQTHRQSR 66505 +G HR R Sbjct: 534 IHVGDVHRLRR 544 >ref|NP_542296.1|unknown Length = 111 Score = 37.0 bits (84), Expect = 0.42 Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 4/98 (4%) Frame = -2 Query: 72724 LSSPSR*SRTGFKRRPTIPTCWRSS---RPSTGPARTRPSSAPWSMRRATARK-SPWSSS 72557 L P R R G +RP P C +S RP T P+ P RR AR+ S + S Sbjct: 3 LGRPCRIRRCGAAQRPLSPACSLASVPTRPGALTTTTLPAFRPIGPRRCRARRASAITCS 62 Query: 72556 CAPVSTRPTTWHWPRACKKPAPSSSTGSWPTRRMPRCS 72443 P RP PR PA S P + CS Sbjct: 63 TIPSPGRPGPRRRPRHSASPATSRGAAR-PKSHLTPCS 99 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 540,046,167 Number of Sequences: 14420 Number of extensions: 11056455 Number of successful extensions: 43412 Number of sequences better than 0.5: 66 Number of HSP's better than 0.5 without gapping: 10044 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 43265 length of database: 3,019,461 effective HSP length: 122 effective length of database: 1,260,221 effective search space used: 50431523978 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig64 (112,665 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_024510.1|putative ribonucleotide reductase large subunit 488 e-137 ref|NP_046713.1|ribunucleotide reductase large subunit 380 e-104 ref|NP_046714.1|unknown 254 1e-66 ref|YP_024511.1|putative ribonucleotide reductase minor subunit 201 1e-50 ref|NP_891805.1|aerobic NDP reductase large subunit 160 3e-38 ref|NP_049845.1|NrdA aerobic NDP reductase, large subunit 154 2e-36 ref|YP_195185.1|ribonucleotide reductase A subunit 152 6e-36 ref|NP_861929.1|NrdA aerobic NDP reductase, large subunit 145 8e-34 ref|NP_899523.1|aerobic ribonucleoside diphosphate reductase lar... 142 7e-33 ref|NP_944991.1|putative ribonucleoside triphosphate reductase a... 136 4e-31 ref|NP_803872.1|ORF306 128 1e-28 ref|YP_006924.1|putative aerobic ribonucleoside diphosphate redu... 120 2e-26 ref|NP_945089.1|gp58 115 7e-25 ref|NP_943927.1|NrdA-A aerobic NDP reductase large subunit 111 2e-23 ref|NP_542569.1|ribonucleotide reductase 110 2e-23 ref|NP_943925.1|NrdA-B aerobic NDP reductase large subunit 72 1e-11 ref|NP_817487.1|gp37 64 3e-09 ref|NP_943924.1|NrdB aerobic NDP reductase small subunit 60 3e-08 ref|YP_195186.1|ribonucleotide reductase B subunit 59 1e-07 ref|NP_932466.1|hypothetical protein 59 1e-07 ref|NP_536385.1|conserved hypothetical protein 56 6e-07 ref|NP_945059.1|gp28 56 6e-07 ref|NP_891801.1|aerobic NDP reductase small subunit 55 1e-06 ref|NP_899524.1|aerobic ribonucleoside diphosphate reductase sma... 55 1e-06 ref|NP_075323.1|gp56 53 7e-06 ref|NP_569800.1|glutaredoxin gp67 51 2e-05 ref|NP_046872.1|gp56 49 8e-05 ref|NP_049841.1|NrdB aerobic NDP reductase, small subunit 49 8e-05 ref|NP_861928.1|NrdB aerobic NDP reductase, small subunit 47 3e-04 ref|YP_006922.1|putative aerobic ribonucleoside diphosphate redu... 47 4e-04 ref|NP_039720.1|predicted 11.4Kd protein 44 0.003 ref|NP_047971.2|gp26 44 0.004 ref|NP_046572.1|ABC transporter 43 0.005 ref|NP_690787.1|immunity repressor 40 0.046 ref|NP_958267.1|hypothetical protein 40 0.060 ref|NP_958701.1|repressor protein cI 39 0.079 ref|NP_996594.1|repressor protein cI 39 0.079 ref|NP_996642.1|repressor protein cI 39 0.079 ref|NP_818357.1|gp56 39 0.10 ref|NP_817395.1|gp57 39 0.10 ref|NP_891707.1|gp5.4 conserved hypothetical protein 39 0.13 ref|NP_803871.1|ORF305 38 0.18 ref|NP_463498.1|putative repressor protein 38 0.23 ref|NP_542287.1|unknown 37 0.30 ref|YP_024964.1|putative prophage repressor protein 37 0.30 ref|NP_046877.1|putative non-heme haloperoxidase 37 0.39 >ref|YP_024510.1|putative ribonucleotide reductase large subunit Length = 704 Score = 488 bits (1256), Expect = e-137 Identities = 271/700 (38%), Positives = 406/700 (58%), Gaps = 9/700 (1%) Frame = -1 Query: 32997 LNAMLNLYDDQGRLQLDADREASRQYFLQHVNQNTVFFHTLAEKLEYLVAENYYEQEVLD 32818 LN + DD G+ +L D+EA +Y L+++ NT F++ E++ L E Y++ + D Sbjct: 10 LNNEITQLDDNGKNKLYKDQEALDEY-LKYIEDNTRKFNSEVERIRVLTKEGTYDK-IFD 67 Query: 32817 QYDFPFIKSLFERAYAVKFRFQSFLGAFKYYTSYTLKTFDGRR---YLERFEDRVCMVAL 32647 I + + AY+ F+F SF+ K+Y SY K +D + ++E +E VAL Sbjct: 68 NVPDTIIDEMTKLAYSFNFKFPSFMAGQKFYESYASKQYDENKKPIFVEDYEQHNVRVAL 127 Query: 32646 TLAQGDEALARQLVDEIIHGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSIN 32467 L Q D AR+L+ +++ FQP+TPT+ N G+ RGEL SC+L ++D++ES+ + Sbjct: 128 YLFQNDYVKARELLVQLMEQTFQPSTPTYNNSGQANRGELSSCYLFVVDDSIESLNFVED 187 Query: 32466 SALQLSKRGGGVAFLLSNIREAGAPIKHIENQSSGIIPIMKMLEDAFSYANQLGARQGAG 32287 S S GGGVA L+ IR GAP+++ N S G+I K +E S +Q G RQG+G Sbjct: 188 SVANASSNGGGVAIDLTRIRPKGAPVRNRPNSSKGVIAFAKAIEHKVSIYDQGGVRQGSG 247 Query: 32286 AVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEPMYLFSPYDVE 32107 AVYLN H DIL L +K+ NA E +R+ LS+GV IP+ EL K +P Y F YD+ Sbjct: 248 AVYLNIFHNDILDLLSSKKINASESVRLDKLSIGVTIPNKFMELVKEGKPFYTFDTYDIN 307 Query: 32106 NVYGKPFGDISVTEKYYEMVDDARIRKTKINARELFQTLAEVQFESGYPYVMFEDTVNRA 31927 +YGK ++++ E Y +++++ I K K +ARE+ +A+ Q ESGYPYV + D N Sbjct: 308 KMYGKYLDELNIDEWYDKLLNNDSIGKVKHDAREVMTDIAKTQLESGYPYVFYIDNANDN 367 Query: 31926 NPI--AGRINMSNLCSEILQVNTPSD-YEADLGYER-IGEDISCNLGSLNIAKTMDSSDF 31759 +P+ G++ MSNLC+EI Q+ S+ Y + I D+ C LGSLN+ ++ Sbjct: 368 HPLKNLGKVKMSNLCTEISQLQEVSEIYPYSYSNQNVINRDVVCTLGSLNLVNVVEKGLL 427 Query: 31758 GATVETAIRGLTAVSEMSDIRSVPSIAEANKQSHAIGLGQMNLHGYLAREHIHYGSEEGL 31579 +V+ R LT V+++ D+ +PS+ +AN AIGLG MNLHG LA+ I YGS E L Sbjct: 428 NESVDIGTRALTKVTDIMDLPYLPSVQKANDDIRAIGLGSMNLHGLLAKNMISYGSREAL 487 Query: 31578 DFTNLYFYTVTYHALRASNRLAIERGRAFAGFEASDYASGVYFDKYTEQAWGPRTARVRE 31399 D N + + + +++ S +A E G+ F GFE SDYA+G YF +Y ++ P+T + ++ Sbjct: 488 DLVNSLYSAINFQSIKTSMLMAKETGKPFKGFEKSDYATGEYFVRYIRESNQPKTDKAKK 547 Query: 31398 LFDKAGIHVPTQEDWRELKASVMAHGLFNRNLQAVPPTGSISYINHSTSSIHPVVSKIEI 31219 + DK +++PTQ+DW EL +V HGL+N +A PT SISY+ ++TSSI PV S IE Sbjct: 548 VLDK--VYIPTQDDWDELAKAVKVHGLYNGYRKAEAPTQSISYVQNATSSIMPVPSAIEN 605 Query: 31218 RKEGKLGRVYYPAPYL--XXXXXXXXXDAYEIGPEKIIDTYAEATQHVDQGLSLTLFFRD 31045 R+ G + YYP PYL AY+I ++II+T A +H DQ +S L+ Sbjct: 606 RQYGDM-ETYYPMPYLSPITQFFYEGETAYKIDNKRIINTSAVVQKHTDQAVSTILYVES 664 Query: 31044 TATTRDINRAQIYAWRKGIKTLYYVRLRQAALEGTEVEGC 30925 T + YAW +G+K+LYY R R+ L E E C Sbjct: 665 EIPTNKLVSLYYYAWEQGLKSLYYTRSRK--LSVIECETC 702 >ref|NP_046713.1|ribunucleotide reductase large subunit Length = 1084 Score = 380 bits (975), Expect = e-104 Identities = 182/361 (50%), Positives = 258/361 (71%), Gaps = 2/361 (0%) Frame = -1 Query: 32964 GRLQLDADREASRQYFLQHVNQNTVFFHTLAEKLEYLVAENYYEQEVLDQYDFPFIKSLF 32785 G+ Q + D+EA YF+ ++NQNTVFFH L EKL+YL+ +YYE+E L +Y F IKS++ Sbjct: 21 GKYQFEKDKEAVHSYFVDYINQNTVFFHDLKEKLDYLIKNDYYEEEFLSKYTFEQIKSIY 80 Query: 32784 ERAYAVKFRFQSFLGAFKYYTSYTLKTFDGRRYLERFEDRVCMVALTLAQGDEALARQLV 32605 + AY+ KFRF SF+ AFK+Y Y LKT D + LER+EDRV +VAL A GD A + V Sbjct: 81 KIAYSYKFRFPSFMSAFKFYNDYALKTNDKTKILERYEDRVSIVALYCADGDYEKAVEEV 140 Query: 32604 DEIIHGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAF 32425 ++ +QPATPTFLN G+K+RGE+VSCFLL + D++ I R+I+ ++QLSK GGGVA Sbjct: 141 HTMMKQEYQPATPTFLNAGRKRRGEMVSCFLLEVGDSLNDISRAIDIS