BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig769 (2651 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_777322.1|hypothetical protein 33 0.20 >ref|NP_777322.1|hypothetical protein Length = 129 Score = 32.7 bits (73), Expect = 0.20 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +2 Query: 1994 TGDIAGRFTSLYRSGG*CSLHADRCRSAGQ*YWPGSGCGARCSITTPDPRCR 2149 +G GR T+L+RSG + H + + WPG AR + T CR Sbjct: 54 SGGCQGRLTALFRSGAEVAFHYEGTAEEVRVTWPGGEYRARTADTCTGTECR 105 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,512,054 Number of Sequences: 14420 Number of extensions: 306425 Number of successful extensions: 835 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 784 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 835 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1286855967 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig770 (3389 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_612994.1|hypothetical protein 64 1e-10 ref|NP_049482.1|serine 64 1e-10 ref|NP_818486.1|gp185 33 0.26 >ref|NP_612994.1|hypothetical protein Length = 348 Score = 63.9 bits (154), Expect = 1e-10 Identities = 62/278 (22%), Positives = 122/278 (43%), Gaps = 5/278 (1%) Frame = +1 Query: 1075 MLTPETVLQGRYRVISQIAKGG-MGAVYHARDLRLRIDVALKQTLFNDDAYRQAFEREAQ 1251 MLTP + IS + + G VY A D L D+ +K+ ++ + EA+ Sbjct: 1 MLTPYKRADVEFEWISDLEEQGCFSKVYLAHDRHLAHDLVIKEIEKKENTNHDDYFNEAR 60 Query: 1252 ILARLRHQALPRVIDHFIEPQGQFLVMEFIHGEDLGNQLARLGRRFASPQVLPLVVKWTD 1431 +L + H + +V ++ M F H L NQL + + +++++ Sbjct: 61 LLYKHAHPNIVQVQYAAQCESNIYIAMPFYHNGSL-NQLMKKNNLTSRE-----IIRYSI 114 Query: 1432 QLLDVLHYLHTRPVPVIHRDIKPKNLKLTPNHDIILLDFGLARGGMTVVADIDGSGTRKV 1611 Q L L+++H++ + +H DIKP N+ ++ ++ +L DFGL++ +V + + Sbjct: 115 QFLSGLYHIHSKGL--MHFDIKPNNIMISNRNEAMLSDFGLSQ----LVNEESRAAPEFG 168 Query: 1612 YGFTPPYAPYEQMRDGEPDPRSDIYSLSATLYHLLTG----VLPPDAMTRMASLVNGQPD 1779 Y F P Y + + + DIY T+Y + G A + + L + Sbjct: 169 YHFHVP-PEYFSLSTNDYNFTYDIYQAGLTIYRMCVGHDNFERERSAFSTIEQLRESIIN 227 Query: 1780 PLRPIRSLAPHVPEGLAQLIEQGMATLINQRPQSAREM 1893 P++ PH+ + L ++ + + N+R QS ++ Sbjct: 228 GCYPLKEYPPHIHKKLITIVNKCIHVDPNERYQSVLDV 265 >ref|NP_049482.1|serine Length = 348 Score = 63.9 bits (154), Expect = 1e-10 Identities = 62/278 (22%), Positives = 122/278 (43%), Gaps = 5/278 (1%) Frame = +1 Query: 1075 MLTPETVLQGRYRVISQIAKGG-MGAVYHARDLRLRIDVALKQTLFNDDAYRQAFEREAQ 1251 MLTP + IS + + G VY A D L D+ +K+ ++ + EA+ Sbjct: 1 MLTPYKRADVEFEWISDLEEQGCFSKVYLAHDRHLAHDLVIKEIEKKENTNHDDYFNEAR 60 Query: 1252 ILARLRHQALPRVIDHFIEPQGQFLVMEFIHGEDLGNQLARLGRRFASPQVLPLVVKWTD 1431 +L + H + +V ++ M F H L NQL + + +++++ Sbjct: 61 LLYKHAHPNIVQVQYAAQCESNIYIAMPFYHNGSL-NQLMKKNNLTSRE-----IIRYSI 114 Query: 1432 QLLDVLHYLHTRPVPVIHRDIKPKNLKLTPNHDIILLDFGLARGGMTVVADIDGSGTRKV 1611 Q L L+++H++ + +H DIKP N+ ++ ++ +L DFGL++ +V + + Sbjct: 115 QFLSGLYHIHSKGL--MHFDIKPNNIMISNRNEAMLSDFGLSQ----LVNEESRAAPEFG 168 Query: 1612 YGFTPPYAPYEQMRDGEPDPRSDIYSLSATLYHLLTG----VLPPDAMTRMASLVNGQPD 1779 Y F P Y + + + DIY T+Y + G A + + L + Sbjct: 169 YHFHVP-PEYFSLSTNDYNFTYDIYQAGLTIYRMCVGHDNFERERSAFSTIEQLRESIIN 227 Query: 1780 PLRPIRSLAPHVPEGLAQLIEQGMATLINQRPQSAREM 1893 P++ PH+ + L ++ + + N+R QS ++ Sbjct: 228 GCYPLKEYPPHIHKKLITIVNKCIHVDPNERYQSVLDV 265 >ref|NP_818486.1|gp185 Length = 73 Score = 32.7 bits (73), Expect = 0.26 Identities = 22/72 (30%), Positives = 32/72 (44%) Frame = +1 Query: 1447 LHYLHTRPVPVIHRDIKPKNLKLTPNHDIILLDFGLARGGMTVVADIDGSGTRKVYGFTP 1626 LH+L R I+RD + +++T +DI+ R + V D G G Y P Sbjct: 10 LHWLALR----IYRDEHTERIEITDEYDIV-------RCRVEVAGDESGHGVDSEYDLLP 58 Query: 1627 PYAPYEQMRDGE 1662 P Q +DGE Sbjct: 59 PGWTMRQFKDGE 70 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,096,294 Number of Sequences: 14420 Number of extensions: 424348 Number of successful extensions: 1273 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 1125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1270 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1656096331 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig771 (2694 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,182,241 Number of Sequences: 14420 Number of extensions: 234658 Number of successful extensions: 630 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 600 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 630 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1309747941 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig772 (3130 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,446,434 Number of Sequences: 14420 Number of extensions: 334891 Number of successful extensions: 912 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 822 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 912 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1531581345 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig773 (3908 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,368,548 Number of Sequences: 14420 Number of extensions: 463100 Number of successful extensions: 1326 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1178 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1326 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1915032843 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig774 (2796 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164334.1|integrase 32 0.48 >ref|YP_164334.1|integrase Length = 411 Score = 31.6 bits (70), Expect = 0.48 Identities = 26/85 (30%), Positives = 38/85 (44%) Frame = +2 Query: 488 RWWQEQVQRWAENDRRWEENQKEIREMLRRLGEMDERHAEIERKWAEQARRLDAVERKFD 667 +W + + RWA++ R+ NQ RR+ + D A K+ E RR Sbjct: 104 QWLELKQGRWADDSRKGSANQA------RRVLDNDLYPALANMKFREIHRR------DLA 151 Query: 668 STIGALGARWGLHSEETFRSALRGI 742 + +GA+ R LH E RS LR I Sbjct: 152 AVVGAIERRGALHVAEKARSWLRQI 176 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,562,736 Number of Sequences: 14420 Number of extensions: 310384 Number of successful extensions: 1148 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1025 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1145 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1365342735 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig775 (3853 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_490635.1|hypothetical protein 33 0.29 >ref|NP_490635.1|hypothetical protein Length = 130 Score = 32.7 bits (73), Expect = 0.29 Identities = 35/141 (24%), Positives = 50/141 (35%), Gaps = 4/141 (2%) Frame = -3 Query: 2027 SAHRSHQTIPRRMAR*QATVPVPHGQPAATIASDHQCCAPYHRHSCRPRGYHPAPPQLY- 1851 + + HQ +P+ A + +VP QP + + P R C+P G P P ++ Sbjct: 4 ACNEQHQRLPQHHAASRRSVPAGQRQPVSFLR-----LRPVVRCLCQPSGQRPRGPTIHG 58 Query: 1850 ---EPTDSAAPVKLAFATSSRHHPVPGPAPDHLPPIDRQSFRPGHRPVPGPDGASVADLR 1680 P ++ A + H PG LP DR P P+P P S Sbjct: 59 RTTRPARLGRGLRWTRADLAGHRLGPGRRRGGLP--DR---HPQSLPLPDPGPLSARAPA 113 Query: 1679 SRGAPARWSDQLPHPTQPGHR 1617 PA HP P R Sbjct: 114 QTAPPA-------HPVIPETR 127 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,981,674 Number of Sequences: 14420 Number of extensions: 505456 Number of successful extensions: 1608 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1394 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1605 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1884787104 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig776 (4136 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_944360.1|gp51 33 0.32 >ref|NP_944360.1|gp51 Length = 521 Score = 32.7 bits (73), Expect = 0.32 Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 7/201 (3%) Frame = +3 Query: 2640 TLTVQGSSGTFTAVGASSGAGISTPAPVVVNTTDPLCLNPAAAGTFTGQIVVCERGIIAR 2819 T T ++ + +A ++ A +STPA VV + L AA TG Sbjct: 59 TATTLTATTSVSAPAVNATASMSTPALVVTTS-----LTGAAKAALTG------------ 101 Query: 2820 VAKSANVAAGGAIGMILYNPTPSSLDADFHSIPTVHIQNTDGSALLAFLTANPGATATFT 2999 A SA I L NPT ++ ++ + DG+ + T G+T T Sbjct: 102 TATSALTTDQAQITGQLNNPTATADYIYGAALGAIGQPVFDGAGVRGVATQTAGSTNWTT 161 Query: 3000 PGAPGPIQGDVMAGFSSRGGPGQTLGISKPDV-------TAPGVNILAGYTAIEYGQAVP 3158 G G + + +++ G LGI+ V T+ V+ + G+T + G Sbjct: 162 NGVAGYVLNNQAGATATKSAVG-LLGINICAVDNCQSWGTSTIVSDVLGFTGVSAGVGRQ 220 Query: 3159 QFAFLSGTSMSSPHNAGAAIL 3221 + S ++SSP+ G A + Sbjct: 221 LYGNESDLNVSSPNTNGIAYM 241 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,155,060 Number of Sequences: 14420 Number of extensions: 520895 Number of successful extensions: 1588 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1377 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1585 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 2036015799 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig777 (3064 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,329,386 Number of Sequences: 14420 Number of extensions: 349301 Number of successful extensions: 1022 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 951 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1022 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1495925483 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig778 (3517 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,502,585 Number of Sequences: 14420 Number of extensions: 388267 Number of successful extensions: 1075 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 968 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1071 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1723560973 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig779 (3176 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,250,317 Number of Sequences: 14420 Number of extensions: 312031 Number of successful extensions: 1072 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 922 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1072 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1557512881 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig780 (2739 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817947.1|gp96 74 6e-14 ref|NP_891600.1|Gp44 43 2e-04 ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase access... 37 0.008 ref|NP_932394.1|DNA polymerase accessory protein 35 0.032 ref|NP_049665.1|gp44 clamp loader subunit, DNA polymerase access... 35 0.055 ref|NP_803852.1|ORF286 34 0.094 ref|NP_803774.1|ORF208 33 0.21 ref|YP_195157.1|sliding clamp loader gp44 33 0.21 ref|NP_943898.1|gp44 clamp loader subunit 32 0.27 >ref|NP_817947.1|gp96 Length = 566 Score = 74.3 bits (181), Expect = 6e-14 Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 5/228 (2%) Frame = +2 Query: 773 FADVAGQEEAKQDLAEIVEFLKFPDKFAALGARIPRGVLMVGPPGTGKTLLSRAVAGEAG 952 F +V G + K+ I + + + + A ++P+G +++G G GKTL +A+ E Sbjct: 281 FDNVGGLDVFKE--WAIRQKIAYSPEARAYNLKLPKGAMLIGVSGCGKTLSCQALGAEWN 338 Query: 953 VPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIVFIDEIDAV--GRQRGAGLGGSH 1126 P + + +VG SR+R +F + IV+IDE++ G G+ GG Sbjct: 339 WPVVRLDINALKGKYVGESESRLRGIFSKIDALGQVIVYIDEVEKALEGAVSGSADGGVS 398 Query: 1127 DEREQTLNQILVEMDGFDTNTNVIVIAATNRPDVLDPALVRPGRFDRQVVLDAPDVRGRI 1306 + L IL M D V+ N P L P +R GRFD +D P R+ Sbjct: 399 AD---ALGAILTWMQ--DRAGQAFVMMTANDPSKLPPEFLRKGRFDEVWWIDLPTRAERM 453 Query: 1307 EILKVHVKGKPLAED---VNLEVIARQTPGFSGADLMNVVNEAAILAA 1441 + ++ + ++L +A T GF+GA++ + A+ A Sbjct: 454 SVAAATLRSNGRDAETLGIDLGAVADATNGFTGAEIAACIEHDAMFNA 501 >ref|NP_891600.1|Gp44 Length = 324 Score = 43.1 bits (100), Expect = 2e-04 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = +2 Query: 869 RIPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEMFVGVGASRVRD--LFDQA 1042 RIP +L PGTGKT +++A+ + GV + ++G++ F+ +R D+ Sbjct: 41 RIPSMILHSPSPGTGKTTVAKALCEDVGVDYLFVNGADCKIDFIRDEITRFAQSVSLDEE 100 Query: 1043 KRNAPCIVFIDEIDAVG 1093 KR +V IDE D G Sbjct: 101 KREKGKVVIIDEYDRAG 117 >ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase accessory protein Length = 320 Score = 37.4 bits (85), Expect = 0.008 Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 2/168 (1%) Frame = +2 Query: 869 RIPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEMFV-GVGASRVRDLFDQAK 1045 ++P +L PGTGKT +++A+ + ++GS+ FV G + R + + K Sbjct: 41 KLPHIILHSPSPGTGKTTVAKALCNDINAEMMFVNGSDCKIDFVRGPLTAFARSVSMEGK 100 Query: 1046 RNAPCIVFIDEIDAVGRQRGAGLGGSHDEREQTLNQILVEMDGFDTNTNVIVIAATNRPD 1225 P ++ IDE D G ++ + M+ F +N + I+I A N Sbjct: 101 ---PKVIVIDEFDRSG-------------LAESQRHLRTFMEEFSSNCS-IIITANNIDG 143 Query: 1226 VLDPALVRPGRFDRQVVLDAPDVRGRIEILKVHV-KGKPLAEDVNLEV 1366 +++P R R + P +I ++K + + + ++ N+E+ Sbjct: 144 IIEPLRSR----CRVIEFGRPTEEDKISMMKKMIHRMVEICKNENIEI 187 >ref|NP_932394.1|DNA polymerase accessory protein Length = 319 Score = 35.4 bits (80), Expect = 0.032 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%) Frame = +2 Query: 869 RIPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQ-AK 1045 RIP +L PGTGKT ++RA+ E F ++G++ F VRD+ A Sbjct: 41 RIPNIILHSPSPGTGKTTVARALVAEIDAEFLFVNGADAKIDF-------VRDVMTPFAS 93 Query: 1046 RNAPC----IVFIDEIDAVG 1093 C ++ +DE D G Sbjct: 94 SKTFCKGGKVIIVDEFDRAG 113 >ref|NP_049665.1|gp44 clamp loader subunit, DNA polymerase accessory protein Length = 319 Score = 34.7 bits (78), Expect = 0.055 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 2/156 (1%) Frame = +2 Query: 869 RIPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDL--FDQA 1042 +IP +L PGTGKT +++A+ + ++GS+ FV + FD Sbjct: 41 KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGR 100 Query: 1043 KRNAPCIVFIDEIDAVGRQRGAGLGGSHDEREQTLNQILVEMDGFDTNTNVIVIAATNRP 1222 ++ ++ IDE D G E ++ L M+ + +N + I+I A N Sbjct: 101 QK----VIVIDEFDRSGLA----------ESQRHLRSF---MEAYSSNCS-IIITANNID 142 Query: 1223 DVLDPALVRPGRFDRQVVLDAPDVRGRIEILKVHVK 1330 ++ P R R + P +IE++K ++ Sbjct: 143 GIIKPLQSR----CRVITFGQPTDEDKIEMMKQMIR 174 >ref|NP_803852.1|ORF286 Length = 508 Score = 33.9 bits (76), Expect = 0.094 Identities = 21/74 (28%), Positives = 35/74 (47%) Frame = +2 Query: 1142 TLNQILVEMDGFDTNTNVIVIAATNRPDVLDPALVRPGRFDRQVVLDAPDVRGRIEILKV 1321 TL+ +L +DG + I TN P+ +D AL+R GR D V + + E +K+ Sbjct: 407 TLSALLNGLDGIVPLDETMTILTTNHPENIDKALLRKGRVDYMVEIPYLRDQEVREYIKL 466 Query: 1322 HVKGKPLAEDVNLE 1363 + ED+ + Sbjct: 467 MFPDFDIPEDIRFK 480 >ref|NP_803774.1|ORF208 Length = 366 Score = 32.7 bits (73), Expect = 0.21 Identities = 40/183 (21%), Positives = 81/183 (44%), Gaps = 8/183 (4%) Frame = +2 Query: 734 RARMFAGDKPTITFADVAGQEEAKQDLAEIVEFL-----KFPDKFAALGARIPRGVLMVG 898 R R+ + +F++V ++ E+ FL + +FAA + + +L++G Sbjct: 146 RIRVNYQNNELYSFSEVISVRNYNPNMMEMYPFLDRSPAEIWTEFAASESNV---LLLIG 202 Query: 899 PPGTGKTLLSRAVAGEAGVPFFSISGSEFVEMFVGVGASR-VRDLFDQAKRNAPCIVFID 1075 PPGTGK+ + G ++ ++ ++ G + +R + D + ++ + Sbjct: 203 PPGTGKSNYINEIIRARGYNDRNVYLADQDDVLGHAGLTNFIRGVEDNS------LIITE 256 Query: 1076 EIDAVGRQRGAGLGGSHDEREQTLNQILVEMDGFDTNTNVIVIAATNRPDV--LDPALVR 1249 + D + +R G ++ +L G +T +I +TN P + +D ALVR Sbjct: 257 DSDKMVAKRVDG--------NSNMSGLLNATAGL-VSTKTKIIISTNLPTLRDVDEALVR 307 Query: 1250 PGR 1258 PGR Sbjct: 308 PGR 310 >ref|YP_195157.1|sliding clamp loader gp44 Length = 315 Score = 32.7 bits (73), Expect = 0.21 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Frame = +2 Query: 884 VLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPC- 1060 +L+ G G GKT +++AV + G + I+GS+ F+ +RVR + Sbjct: 42 LLLTGSAGVGKTTIAKAVCEQIGASYIVINGSD-EGRFLDTVRNRVRQFATTVSLTSGAP 100 Query: 1061 --IVFIDEID 1084 +V IDE D Sbjct: 101 HKVVIIDEAD 110 >ref|NP_943898.1|gp44 clamp loader subunit Length = 321 Score = 32.3 bits (72), Expect = 0.27 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 8/119 (6%) Frame = +2 Query: 869 RIPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFD---- 1036 RIP +L PGTGKT ++R + E ISG G R+ DL + Sbjct: 43 RIPHILLFSKSPGTGKTTMARVLCNEIDAEVMFISG----------GKLRIDDLRNDLTA 92 Query: 1037 ----QAKRNAPCIVFIDEIDAVGRQRGAGLGGSHDEREQTLNQILVEMDGFDTNTNVIV 1201 ++ ++ IDE D G+ H+E M+ F +N +VI+ Sbjct: 93 FASTMTRKPGGKVIIIDEGD------NKGMKAVHEELRSW-------MEAFSSNCSVIM 138 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,495,843 Number of Sequences: 14420 Number of extensions: 309324 Number of successful extensions: 913 Number of sequences better than 0.5: 9 Number of HSP's better than 0.5 without gapping: 848 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 909 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1334275056 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig781 (3190 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_861746.1|gp43 DNA polymerase 33 0.14 >ref|NP_861746.1|gp43 DNA polymerase Length = 903 Score = 33.5 bits (75), Expect = 0.14 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 2/156 (1%) Frame = +3 Query: 864 QGTRLAPMRMQARRDHWAIHKLYGMATPHLVQQAEVYNARNWTLHEAYSLVRRQAWVLGP 1043 Q T +A M Q R I+ LYG + Y+ RN T + + Q W+ Sbjct: 546 QRTEVAGMTAQINRK-LLINSLYGALGNVWFRY---YDLRNATAITTFGQMALQ-WI--- 597 Query: 1044 DDDLVAYLRLLSGPNGHVFSLIIRPDEREQAVDVL--RFGLAQLSDSRPVYLLLREYQQE 1217 + + YL + G G F L D + D + + G ++ D+ L ++ +E Sbjct: 598 ERKVNEYLNEVCGTEGEAFVLYGDTDSIYVSADKIIDKVGESKFRDTNHWVDFLDKFARE 657 Query: 1218 LFEPAMRLGFQPVGEQTLLVKHMVMPIRRAVLAPSL 1325 EPA+ GF+ + E +H++ R A+ P L Sbjct: 658 RMEPAIDRGFREMCEYMNNKQHLMFMDREAIAGPPL 693 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,396,280 Number of Sequences: 14420 Number of extensions: 380820 Number of successful extensions: 1167 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1059 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1166 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1563995765 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig782 (3793 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_932394.1|DNA polymerase accessory protein 36 0.026 ref|NP_049665.1|gp44 clamp loader subunit, DNA polymerase access... 36 0.034 ref|NP_803852.1|ORF286 35 0.076 ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase access... 34 0.099 ref|NP_695183.1|zinc finger protein 33 0.17 ref|YP_112509.1|conserved hypothetical protein 32 0.49 >ref|NP_932394.1|DNA polymerase accessory protein Length = 319 Score = 36.2 bits (82), Expect = 0.026 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 2/126 (1%) Frame = -2 Query: 3636 KLLRRAIANDQLFSLILWGP-PGSGKTTLAQIIAHSTKAHFEPISAVSAGVNDLRRVVQE 3460 K+ + + + ++ ++IL P PG+GKTT+A+ + A F ++ A ++ +R V+ Sbjct: 31 KIFKAIVKSGRIPNIILHSPSPGTGKTTVARALVAEIDAEFLFVNGADAKIDFVRDVMTP 90 Query: 3459 AQDRLGMFQQRTVVFIDEIHRFN-KSQQDAILPYVEDGTIILIGATTENPSFEVNSALLS 3283 + V+ +DE R Q + ++E + T N + AL S Sbjct: 91 FASSKTFCKGGKVIIVDEFDRAGLADSQRHLRSFMEAHSKNCTFIITANDLGGIIPALQS 150 Query: 3282 RARVFK 3265 R RV + Sbjct: 151 RCRVIQ 156 >ref|NP_049665.1|gp44 clamp loader subunit, DNA polymerase accessory protein Length = 319 Score = 35.8 bits (81), Expect = 0.034 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 6/124 (4%) Frame = -2 Query: 3594 LILWGP-PGSGKTTLAQIIAHSTKAHFEPISAVSAGVNDLRRVVQEAQDRLGMFQQRTVV 3418 +IL P PG+GKTT+A+ + H A ++ ++ +R + ++ V+ Sbjct: 45 IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQKVI 104 Query: 3417 FIDEIHRFNKSQQDAIL-----PYVEDGTIILIGATTENPSFEVNSALLSRARVFKLEAL 3253 IDE R ++ L Y + +II+ T N + L SR RV Sbjct: 105 VIDEFDRSGLAESQRHLRSFMEAYSSNCSIII----TANNIDGIIKPLQSRCRVITFGQP 160 Query: 3252 TDEE 3241 TDE+ Sbjct: 161 TDED 164 >ref|NP_803852.1|ORF286 Length = 508 Score = 34.7 bits (78), Expect = 0.076 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = -2 Query: 3600 FSLILWGPPGSGKTTLAQIIAHSTKAHFEPISAVSAGVNDLRR 3472 F+ +L GPPG+GKT++++ IA + +S S + LRR Sbjct: 227 FTCVLTGPPGTGKTSISKAIASHFNKNVSALSLASMTNDSLRR 269 >ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase accessory protein Length = 320 Score = 34.3 bits (77), Expect = 0.099 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 2/128 (1%) Frame = -2 Query: 3618 IANDQLFSLILWGP-PGSGKTTLAQIIAHSTKAHFEPISAVSAGVNDLRRVVQEAQDRLG 3442 ++ +L +IL P PG+GKTT+A+ + + A ++ ++ +R + + Sbjct: 37 VSKGKLPHIILHSPSPGTGKTTVAKALCNDINAEMMFVNGSDCKIDFVRGPLTAFARSVS 96 Query: 3441 MFQQRTVVFIDEIHRFNKSQ-QDAILPYVEDGTIILIGATTENPSFEVNSALLSRARVFK 3265 M + V+ IDE R ++ Q + ++E+ + T N + L SR RV + Sbjct: 97 MEGKPKVIVIDEFDRSGLAESQRHLRTFMEEFSSNCSIIITANNIDGIIEPLRSRCRVIE 156 Query: 3264 LEALTDEE 3241 T+E+ Sbjct: 157 FGRPTEED 164 >ref|NP_695183.1|zinc finger protein Length = 280 Score = 33.5 bits (75), Expect = 0.17 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 6/62 (9%) Frame = -2 Query: 3630 LRRAIANDQL-----FSLILWGPPGSGKTTLAQIIAHSTKAHFE-PISAVSAGVNDLRRV 3469 L R IA + L ++ IL G PG GK+ LA IA + H + P++ + VN+L R+ Sbjct: 108 LARKIAGEYLNPKTTYNTILTGLPGRGKSHLALSIAKAVNDHADKPMACLFVSVNELFRL 167 Query: 3468 VQ 3463 ++ Sbjct: 168 IK 169 >ref|YP_112509.1|conserved hypothetical protein Length = 342 Score = 32.0 bits (71), Expect = 0.49 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Frame = -3 Query: 1640 TPAGTVGCEFVINCAGPWAGEVAALAGLDLPVRP--YRRNVYMTTPFPAISAPIPLTIDV 1467 TPA +GC + G ++ ++ +GLD P++ ++ N+ M AIS ++ Sbjct: 82 TPATNLGCLYAKYIGGKFSLKIKGSSGLDTPLQNAFWQNNITMWNTTNAISGSWIGSVGT 141 Query: 1466 GSGFY 1452 GSG Y Sbjct: 142 GSGTY 146 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,288,758 Number of Sequences: 14420 Number of extensions: 404170 Number of successful extensions: 1226 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 1095 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1226 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1852949484 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig783 (3377 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,186,567 Number of Sequences: 14420 Number of extensions: 393005 Number of successful extensions: 1181 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1056 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1180 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1649671127 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig784 (3834 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542287.1|unknown 33 0.17 ref|NP_817455.1|gp5 32 0.50 >ref|NP_542287.1|unknown Length = 224 Score = 33.5 bits (75), Expect = 0.17 Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 21/191 (10%) Frame = +3 Query: 2502 STKRLPCRPIFRPASPATPSCTCKRRPASARSSIRGAVRTTSNGSPTH-------WPAGP 2660 S+ +P I +P +CT + RP R R A T S SPT WP Sbjct: 8 SSTCIPASSISPCPAPVIITCTSRMRPTWTRPERRCASPTRSAASPTFRRWTRSAWPTSR 67 Query: 2661 GR-----ISRKSRPSVGWPKR*RP---ACPNYGSKKQRPVGKPTSTLG---ERRLSG*TN 2807 R IS P+ KR P A + ++ QR P+ +L + R+ Sbjct: 68 SRRLRSKISSARGPAQRSSKRRLPSIAAWSKHSARSQRARSLPSKSLATAPQHRIP---- 123 Query: 2808 IVSITKNPSRFWKSITPLCA-RSRSNACNACVPNVTKSVFKPRSTN*PAWRPLVKATCS- 2981 ++ T++P R ++ C R+R + + +S + PA +++T + Sbjct: 124 -LARTRDPIRLLPALMGACGRRARPRSIATSRSAMRRSSAFSMTAGAPAMSTCLRSTMTA 182 Query: 2982 -LRPSKRPALA 3011 L + RPA+A Sbjct: 183 PLSNTARPAIA 193 >ref|NP_817455.1|gp5 Length = 153 Score = 32.0 bits (71), Expect = 0.50 Identities = 18/40 (45%), Positives = 21/40 (52%) Frame = +2 Query: 23 QYRARDGLCPGDRGGVSAGHAGARPGCQRGRASHAVRLLG 142 QY +R GL PGDR + G G G + G A RLLG Sbjct: 118 QYSSRFGLTPGDRASLQLGGGGEEDGPKNG----AERLLG 153 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,285,718 Number of Sequences: 14420 Number of extensions: 483152 Number of successful extensions: 1605 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1355 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1605 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1875235818 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig785 (3172 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,584,404 Number of Sequences: 14420 Number of extensions: 345219 Number of successful extensions: 985 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 904 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 981 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1554271439 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig786 (3060 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164274.1|DNA cytosine methyltransferase 71 6e-13 ref|NP_817742.1|gp65 64 1e-10 ref|NP_150145.1|putative DNA methylase 50 1e-06 ref|NP_878240.1|Mth 41 7e-04 ref|NP_818425.1|gp127 39 0.003 ref|NP_839905.1|putative methylase 39 0.004 ref|NP_047260.1|putative C5 methylase MarMP 32 0.30 >ref|YP_164274.1|DNA cytosine methyltransferase Length = 687 Score = 71.2 bits (173), Expect = 6e-13 Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 12/105 (11%) Frame = +3 Query: 1287 RDTPFLLVYYGSDKAGGWQSLDTPLRTITTLDRFALVRPDGRGGHE------MRMLQPPE 1448 R FL+ Y+ + G W LD P+ +TT DR ALV +G +RMLQPPE Sbjct: 570 RVAAFLMRYHST--GGQWAELDHPVTAVTTKDRLALVTVFVKGTPYVIVDICLRMLQPPE 627 Query: 1449 LKKAMGFPPEFVINHG------NRREQIKMLGNAVCPPVMQAIVQ 1565 L +A GFP +++I+ G ++ EQ+ M GN+V PP M AI + Sbjct: 628 LYRAQGFPTDYIIDRGADGKPFSKTEQVHMCGNSVSPPPMAAIAR 672 Score = 40.8 bits (94), Expect = 9e-04 Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 63/268 (23%) Frame = +3 Query: 852 SPECTSHSVARGASPKDKASLRLSWNVWRFAEVFQPRWVVVENVPAFRLW---------- 1001 SP+CT HS A G P+ + LSW ++A +P + +ENV W Sbjct: 98 SPDCTHHSQAAGGQPRKREIRNLSWVGLKWAGKKKPWVISLENVKQILQWGPLIAKRDRS 157 Query: 1002 ---------------EH------------------YRHFLEIMQRSGYRVLEQMLVASAF 1082 EH +R F+ +++ GY+V +++ A F Sbjct: 158 TGRVVKLDGSVAAPGEHVPVQQQFLIPDPKRRGQTWRRFVHLLEGMGYQVEWRVIKACDF 217 Query: 1083 GVPQXXXXXXXXXXXXXEP-------RAVVPCRYEPLPASYAINLNGSYRYTPLVTANR- 1238 G P P A P + + + A ++ SY + + Sbjct: 218 GAPTSRERLFMIARSDGHPIVWPEPTHAKHPKKGQQKWKTAADCIDWSYPSKSIFGRKKA 277 Query: 1239 -AARTLVRAQNAID--VLGRDTPFL--LVYYGSDKAGGWQSLDTPLRTITTLDR---FAL 1394 A TL R + VL PF+ + + + A QS PLRTIT+ R FA+ Sbjct: 278 LAEATLRRVAKGVKKFVLDNPRPFIVPIANWSGELA---QSAHEPLRTITSWPRGGSFAV 334 Query: 1395 VRP----DGRGGHEMRMLQPPELKKAMG 1466 P G G E + + P L + +G Sbjct: 335 ASPTLVQTGYGEREGQQPRVPGLDQPLG 362 >ref|NP_817742.1|gp65 Length = 513 Score = 63.5 bits (153), Expect = 1e-10 Identities = 51/168 (30%), Positives = 71/168 (42%), Gaps = 19/168 (11%) Frame = +3 Query: 639 DLFCGIGGNSCXXXXXXXXXXXXFDK-WALAGQVFQDNFPEARFYNVDLAILSRRQIHHF 815 DLFCG GG+S W LA + N P+A DL+ + R+ Sbjct: 6 DLFCGAGGSSTGAIEIPGVEVRVASNHWDLAVETHNTNHPDADHVCADLSQIDPRRFPR- 64 Query: 816 HETIGHVDLILASPECTSHSVARGASPKD---------------KASLRLSWNVWRFAEV 950 D++ ASPECT+HSVA+G D + S W+V RFAE Sbjct: 65 ------TDILWASPECTNHSVAKGRKRVDSQPDLFGEVLPDAAAERSRATMWDVPRFAEA 118 Query: 951 FQPRWVVVENVPAFRLWEHYRHFLEIMQRSGYR---VLEQMLVASAFG 1085 + + V+VENV W+ ++ +L M Y V + A AFG Sbjct: 119 HRYQAVIVENVVDAWHWQPFQAWLMAMDSLDYEHHIVFLNSMHAQAFG 166 Score = 49.3 bits (116), Expect = 2e-06 Identities = 24/45 (53%), Positives = 32/45 (71%) Frame = +3 Query: 1428 RMLQPPELKKAMGFPPEFVINHGNRREQIKMLGNAVCPPVMQAIV 1562 RML+P E+ +AM FP E+ I GNRREQ++ GNAV PP + +V Sbjct: 459 RMLEPREIARAMDFPAEYRIL-GNRREQVRQAGNAVTPPAARDLV 502 >ref|NP_150145.1|putative DNA methylase Length = 385 Score = 50.1 bits (118), Expect = 1e-06 Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 6/162 (3%) Frame = +3 Query: 627 IRAIDLFCGIGGN--SCXXXXXXXXXXXXFDKWALAG-QVFQDNFPEARFYNVDLAILSR 797 ++ +DLF GIGG DK+A A + D E + D+ +S Sbjct: 1 MKFLDLFAGIGGFRIGMESAGHECIGFCEIDKFARASYKAIHDTKGEIELH--DITTVSD 58 Query: 798 RQIHHFHETIGHVDLILASPECTSHSVARGASPKDKASLRLSWNVWRFAEVFQPRWVVVE 977 I IGHVD+I C + S+A + L + + RFA + +PR++ +E Sbjct: 59 DTIRG----IGHVDVICGGFPCQAFSIAGNRRGFEDTRGTLFFEIARFASILKPRYLFLE 114 Query: 978 NVPAFRLWEHYRHF---LEIMQRSGYRVLEQMLVASAFGVPQ 1094 NV + F L + GY V Q+L + FGVPQ Sbjct: 115 NVKGLLNHDRGNTFEVILSALDELGYDVEWQVLNSKNFGVPQ 156 >ref|NP_878240.1|Mth Length = 312 Score = 41.2 bits (95), Expect = 7e-04 Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 3/156 (1%) Frame = +3 Query: 636 IDLFCGIGGNSCXXXXXXXXXXXXFDKWALAGQVFQDNFPEARFYNVDLAILSRRQIHHF 815 + LF G GG+ D A V+ +N PE + D++ L Sbjct: 5 VSLFSGCGGSDAGVLNAGFNVLMANDILPYARDVYLENHPETDYILGDISGL-------- 56 Query: 816 HETIGHVDLILASPECTSHSVARGASPKDKASLRLSWNVWRFAEVFQPRWVVVENVPAF- 992 ++ +L++ C S GA D+ L R +P+ +VENV Sbjct: 57 -QSFPSAELLIGCYPCQGFSQG-GARKADRKINTLYLEFARALSKIKPKAFIVENVSGMV 114 Query: 993 -RLWEHY-RHFLEIMQRSGYRVLEQMLVASAFGVPQ 1094 R +EH + ++ + +GY V Q+L AS +GV Q Sbjct: 115 RRNFEHLLKDQFKVFEEAGYTVSSQILNASHYGVSQ 150 >ref|NP_818425.1|gp127 Length = 247 Score = 38.9 bits (89), Expect = 0.003 Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 7/164 (4%) Frame = +3 Query: 624 TIRAIDLFCGIGGNSCXXXXXXXXXXXXFDKWALAGQVFQDNFPEARFYNVDLAILSRRQ 803 T+ +DLF GIGG S + Q+ ++P+A ++ D+ +S Sbjct: 2 TLTHVDLFAGIGGFSLTLQRAGAKTVANVEIDKNCRQILARHYPDAVQFD-DIKNVSGDD 60 Query: 804 IHHFHETIGHVD---LILASPECTSHSVA-RGASPKDKASLRLSWNVWRFAEVFQPRWVV 971 + ++G V ++ C S A RGA + S L W + R P+W + Sbjct: 61 LR----SVGFVPERGILTGGFPCQDISAAGRGAGLAGERS-GLFWEIVRLLNELHPKWFI 115 Query: 972 VENVPAFRLWEHYRHF---LEIMQRSGYRVLEQMLVASAFGVPQ 1094 +ENVP R + + SGY + ++L A GVPQ Sbjct: 116 LENVPRLLSIHGGRDMGTVVGALAGSGYGLAWRVLDAQFTGVPQ 159 >ref|NP_839905.1|putative methylase Length = 185 Score = 38.5 bits (88), Expect = 0.004 Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 8/164 (4%) Frame = +3 Query: 627 IRAIDLFCGIGGN--SCXXXXXXXXXXXXFDKWALAGQVFQDNFPEARFYNVDLAILSRR 800 ++ +DLF GIGG DK+A N R Y+ D+ +S Sbjct: 1 MKFLDLFAGIGGFRLGLEQAGHECVGFCEIDKFARQSYKAIHNTEGEREYH-DITTVSNE 59 Query: 801 QIHHFHETIGHVDLILASPECTSHSVA-RGASPKDKASLRLSWNVWRFAEVFQPRWVVVE 977 + + G V+LI C + S+A + D+ L + + R AE +PR + +E Sbjct: 60 E---WRTLRGTVELICGGFPCQAFSIAGKRKGFLDETRGTLFFEIARAAEQIKPRTLFLE 116 Query: 978 NVPAFRLWEH-----YRHFLEIMQRSGYRVLEQMLVASAFGVPQ 1094 NV L H +R + + GY Q+L + FGVPQ Sbjct: 117 NVRG--LLSHDKGRTFRTIISTLDELGYDAEWQILNSKNFGVPQ 158 >ref|NP_047260.1|putative C5 methylase MarMP Length = 259 Score = 32.3 bits (72), Expect = 0.30 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 3/47 (6%) Frame = +3 Query: 750 FPEAR---FYNVDLAILSRRQIHHFHETIGHVDLILASPECTSHSVA 881 FP+A+ ++ +DL+IL+ I ++ + D+ILASP C S S+A Sbjct: 41 FPKAKNYFYHRIDLSILNDNLIQELNK-LPKPDIILASPPCESWSIA 86 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,342,244 Number of Sequences: 14420 Number of extensions: 346410 Number of successful extensions: 889 Number of sequences better than 0.5: 7 Number of HSP's better than 0.5 without gapping: 822 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 881 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1494304762 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig787 (3132 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072072.1|putative 13.5 protein 33 0.14 >ref|NP_072072.1|putative 13.5 protein Length = 129 Score = 33.5 bits (75), Expect = 0.14 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 2321 QGAVVRVCARHVQADGHASAIDHDHHLGAVANLRCASASAPL 2446 Q V +C + +G A A+DH H GAV L C++ + L Sbjct: 68 QNGVCAICGITERVEGRALAVDHCHATGAVRGLLCSACNIAL 109 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,351,169 Number of Sequences: 14420 Number of extensions: 342301 Number of successful extensions: 1038 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 933 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1038 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1533202066 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig788 (2088 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,332,803 Number of Sequences: 14420 Number of extensions: 209604 Number of successful extensions: 603 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 544 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 603 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 1000052581 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig789 (3367 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_050152.1|hypothetical protein 34 0.12 >ref|NP_050152.1|hypothetical protein Length = 126 Score = 33.9 bits (76), Expect = 0.12 Identities = 19/53 (35%), Positives = 25/53 (47%) Frame = -1 Query: 1987 ARELLSSA*PTHVRDAYESHFTPPAITLVCSSTVVMAVAQPVTTTAGGTFVVD 1829 A + A T V+D Y S P TLVC++ V PV+ T+G VD Sbjct: 39 AESYVQHAIGTDVKDFYISEENKPLYTLVCNALAASYVQNPVSITSGAVVNVD 91 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,833,927 Number of Sequences: 14420 Number of extensions: 382245 Number of successful extensions: 1057 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 979 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1057 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1643245923 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig790 (3150 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,593,384 Number of Sequences: 14420 Number of extensions: 345122 Number of successful extensions: 1005 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 902 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1004 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1542926392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig791 (3944 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 38 0.009 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 37.7 bits (86), Expect = 0.009 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Frame = -1 Query: 2861 PGSTPERHPTLRKRRYRSGGGVLPPPPGRA---GVRACSPSPHGMMEVVPGMSPSHRSDN 2691 P + P RHP + + R R+ P PG A C+P+ E P + P + Sbjct: 65 PAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRPRAPECD 124 Query: 2690 ARRHHNRSRA 2661 HH R+RA Sbjct: 125 RGAHHLRTRA 134 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,856,080 Number of Sequences: 14420 Number of extensions: 528594 Number of successful extensions: 1739 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1465 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1736 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1934135415 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig792 (2985 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_665986.1|unknown 32 0.39 >ref|NP_665986.1|unknown Length = 213 Score = 32.0 bits (71), Expect = 0.39 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%) Frame = +1 Query: 733 ATTCAPSPRSQLTLMGFMMRRRAPSTASGEALARLPT----HSPKPCATRRVMP*LPPTS 900 ATT S L+ G RRR+P+T+S + +R T SP P A+RR TS Sbjct: 8 ATTTRSRRSSALSTTGSSSRRRSPTTSSRASSSRSRTTTRRRSPSPIASRR------RTS 61 Query: 901 FR--ATGSAPVTTTNQRAGSTKDW 966 R + SA +T T +GS+ W Sbjct: 62 ARRWSGRSAGITVT---SGSSTRW 82 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,863,084 Number of Sequences: 14420 Number of extensions: 339885 Number of successful extensions: 1086 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 963 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1085 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1453786737 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig793 (4074 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,371,832 Number of Sequences: 14420 Number of extensions: 448738 Number of successful extensions: 1351 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1193 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1350 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 2002586298 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig794 (2744 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818387.1|gp88 34 0.072 >ref|NP_818387.1|gp88 Length = 158 Score = 34.3 bits (77), Expect = 0.072 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Frame = -3 Query: 2583 WPAPA---GGGDDACTQAGSLRHGERLQPDLTQRDMWVMHRAPSPGVPWERALRRTPHPT 2413 WP + G Q+G LRH E D + +VMHRA P RA+ TP+ Sbjct: 64 WPTNSKRVGNAMKLLIQSGWLRHNEYKHGDRIYKHEYVMHRARRVCAPAARAVGSTPYKR 123 Query: 2412 P 2410 P Sbjct: 124 P 124 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,126,084 Number of Sequences: 14420 Number of extensions: 329436 Number of successful extensions: 913 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 788 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 912 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1337545338 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig795 (4174 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,878,545 Number of Sequences: 14420 Number of extensions: 467162 Number of successful extensions: 1553 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1312 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1552 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 2055118371 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig796 (3922 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,547,119 Number of Sequences: 14420 Number of extensions: 478324 Number of successful extensions: 1166 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1046 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1166 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1921400367 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig797 (4265 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,528,155 Number of Sequences: 14420 Number of extensions: 517609 Number of successful extensions: 1407 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1239 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1404 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 2104466682 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig798 (4178 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046877.1|putative non-heme haloperoxidase 72 4e-13 ref|NP_817650.1|gp61 62 4e-10 ref|NP_542523.1|hypothetical protein 33 0.25 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 72.4 bits (176), Expect = 4e-13 Identities = 77/271 (28%), Positives = 118/271 (43%), Gaps = 14/271 (5%) Frame = -2 Query: 2518 VTLPHGVQLRYDDAGSGQPVVLLHAFPLSAALWRAQLSTLGDR-MRMIAPDLRGFGGSPA 2342 + L G ++ G+G P+V LH +SA + L+ L + R+IA D G S + Sbjct: 6 IVLADGFRVGVSTVGTGAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGS 65 Query: 2341 TPLPQSLDDYATDVLALLDILNIERAVLAGLSMGGYIAFALLLRAPERISGLLLADTRAT 2162 P +++D L LD L+I RA+ AG SMGG + + R P R++ +L D A Sbjct: 66 LPTGHTVEDMTRVTLKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDAAA- 124 Query: 2161 ADSEETRAARAVNARIALEEGSAALAGRMLPNLVAPGASEALR----AELLSXXXXXXXX 1994 +E V L +A G + ++V G EA+ E LS Sbjct: 125 --GQEHHDNIKVGHYATLAFRAAKKLGEAVTDIVGDG-YEAMHLRDTGEKLSFLGMLRDS 181 Query: 1993 XXXXALHAMA---ARPDSTPLLAEI---RVPTTVVVGAEDALTPPAEAQVMHNAIADSRF 1832 A + D+TPLL + VPT V+ G D + P EA + I ++ F Sbjct: 182 VSGLRFVRAAFALMKADTTPLLHAMYRHGVPTAVLHGLHDQIV-PYEAGLSTAKITNASF 240 Query: 1831 VVIP--HAGHLSAIERPAE-FNLALVELVMR 1748 + H+ L+ E A+ LAL++L R Sbjct: 241 YGVDGFHSWMLADPELAADLIALALLDLFPR 271 >ref|NP_817650.1|gp61 Length = 274 Score = 62.4 bits (150), Expect = 4e-10 Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 9/240 (3%) Frame = -2 Query: 2518 VTLPHGVQLRYDDAGSGQPVVLLHAFPLSAALWRAQLSTLGDR-MRMIAPDLRGFGGSPA 2342 + L G ++ G+G P+V LH +SA + L L R + A D G + + Sbjct: 8 IVLDDGFRVGVSQVGTGVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDS 67 Query: 2341 TPLPQSLDDYATDVLALLDILNIERAVLAGLSMGGYIAFALLLRAPERISGLLLADTRAT 2162 P ++++ L LD L I++AV G SMGG + + R PER+ +L D A Sbjct: 68 LPFGHTVEEMTRVTLRALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILLDAAAG 127 Query: 2161 AD-----SEETRAARAVNARIALEEGSAALAGRMLPNLVAPGASEALRAELLSXXXXXXX 1997 + + RA + ++ + G A ++ G ++ LR+ Sbjct: 128 KEHHANLKDPLRATQRLSGAVVDVLGDTYQAIKLRSATEGLGLAQTLRSSFAGFRFVRAA 187 Query: 1996 XXXXXALHAMAARPDSTPLLAEIR---VPTTVVVGAEDALTPPAEAQVMHNAIADSRFVV 1826 + D+ PLL ++ V T V+ G D + P A + A + + V Sbjct: 188 Y--------ALLKADTEPLLKAMKALDVQTAVIHGLSDQIVPFAAGKSAAEASGGALYAV 239 >ref|NP_542523.1|hypothetical protein Length = 150 Score = 33.1 bits (74), Expect = 0.25 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Frame = -2 Query: 3787 WSAHCTFSLRCTQHRVLEWRDGRYQNRYY---DDFFYNWTMVTLLW---LLSCGITNFKG 3626 W T RC RV+ RDG+ Y +D+ W + L+ L+S IT+F+ Sbjct: 60 WECEETRQFRCDVERVVLLRDGKPDIAYLASEEDYHNEWGFIERLYEDALVSVEITDFEE 119 Query: 3625 HPILSFSCAQEAHDGITR 3572 IL E DG R Sbjct: 120 IEILDCDPPNEYGDGYVR 137 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,911,435 Number of Sequences: 14420 Number of extensions: 470839 Number of successful extensions: 1329 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 1169 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1327 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 2058302133 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig799 (3173 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,945,214 Number of Sequences: 14420 Number of extensions: 406050 Number of successful extensions: 1194 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1070 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1194 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1555892160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig800 (4702 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_037691.1|IS903 transposase 33 0.28 >ref|NP_037691.1|IS903 transposase Length = 307 Score = 33.1 bits (74), Expect = 0.28 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Frame = -2 Query: 3792 GFWPGEKDEQSRAYA-ERATGD---WLWQIDVDEFYHPADIARVAAYLQQHPETSCLCFR 3625 G+WPGE +++RA A +R TG W W D Y+ IA A Y + L R Sbjct: 221 GYWPGEYADRNRAVANQRMTGSNARWKWTTD----YNRRSIAETAMYRVKQLFGGSLTLR 276 Query: 3624 AY 3619 Y Sbjct: 277 DY 278 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,589,085 Number of Sequences: 14420 Number of extensions: 601342 Number of successful extensions: 1723 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1486 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1717 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2312557826 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig801 (3603 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 54 9e-08 >ref|NP_046572.1|ABC transporter Length = 705 Score = 54.3 bits (129), Expect = 9e-08 Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 6/181 (3%) Frame = -2 Query: 2261 VRDLNLVVQPGELVALLGPNGAGKTTTVRMLAAILPPGSGQARICGYDVVSHAQ-RVRGM 2085 V D+NL++ + V ++G +G GK+T + L+ + + G D+ + +R Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 2084 VGLLTEYPGLYGRMAALEYLAFFGALLGVE----ATLCRQRSEALLRQFGLWEVR-DRQL 1920 + + E P L+ ++ G + A + Q E + + + Sbjct: 559 IVYIDENPFLF--KGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG 616 Query: 1919 ESFSKGMRQKMALIRALIHDPPVLFLDEPTTAMDPQSARTVRDAIGELRSAQRSILLTTH 1740 + S G +Q++AL RA++H P VL LDE + +DP + + + + + + I+L TH Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCL---IILITH 673 Query: 1739 N 1737 N Sbjct: 674 N 674 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,845,267 Number of Sequences: 14420 Number of extensions: 393988 Number of successful extensions: 1269 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1107 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1269 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1770143702 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig802 (4147 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_536413.1|putative DNA cytosine methylase 49 4e-06 ref|NP_666012.1|adenine methyltransferase 47 1e-05 ref|NP_666000.1|putative N4-cytosine methyltransferase 46 3e-05 ref|NP_818050.1|gp77 46 3e-05 ref|YP_077259.1|Cytosine methylase, similar to N4-cytosine methy... 46 4e-05 ref|NP_599080.1|unknown 46 4e-05 ref|NP_818049.1|gp76 46 4e-05 ref|NP_046948.1|gp52 46 4e-05 ref|NP_543076.1|putative DNA methylase 45 6e-05 ref|NP_892105.1|DNA adenine-methylase 44 2e-04 ref|YP_077254.1|Cytosine methylase, similar to PspGI methylase 43 3e-04 ref|YP_006632.1|putative DNA adenine methylase 43 3e-04 ref|NP_958699.1|adenine DNA methyltransferase 41 0.001 ref|NP_038314.1|ORF13 38 0.010 ref|NP_108695.1|putative methylase 37 0.013 ref|NP_817550.1|gp101 36 0.029 ref|NP_705636.1|gp10 35 0.084 ref|NP_958114.1|gp10 35 0.084 ref|NP_818455.1|gp155 33 0.24 ref|NP_542291.1|unknown 32 0.42 >ref|NP_536413.1|putative DNA cytosine methylase Length = 378 Score = 48.9 bits (115), Expect = 4e-06 Identities = 29/69 (42%), Positives = 36/69 (52%) Frame = +2 Query: 1607 SLWLIERRDGSGVHRADYWGNFVPQIPHQFIRRYTRPGEWVLDPFAGSGTTLIEARRLGR 1786 S+W I + G H A F + + +RPG+ V DPF GSGTT A+RLGR Sbjct: 294 SVWTIPTQSFDGAHFA----TFPEALVEPCVLAGSRPGDVVFDPFFGSGTTGQVAQRLGR 349 Query: 1787 NAIGVELQP 1813 IG EL P Sbjct: 350 RFIGCELNP 358 >ref|NP_666012.1|adenine methyltransferase Length = 419 Score = 47.4 bits (111), Expect = 1e-05 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 5/97 (5%) Frame = +2 Query: 1643 VHRADYWGNFVPQ-----IPHQFIRRYTRPGEWVLDPFAGSGTTLIEARRLGRNAIGVEL 1807 VH+ GN P + +FI + ++PG+ VLDPFAGSG+T + + + R IG EL Sbjct: 323 VHKHSTSGNEHPTQKPVGLLEEFIEQSSQPGDVVLDPFAGSGSTAVASVQTDRECIGFEL 382 Query: 1808 QPAMVRHVEELLAAEPTPHPTVAVIEQGDSLTVDFAD 1918 + + + V + +E A E GD+ D D Sbjct: 383 EGDVYQEVVDRRISEAVRAKEAA--EDGDAENGDAGD 417 >ref|NP_666000.1|putative N4-cytosine methyltransferase Length = 448 Score = 46.2 bits (108), Expect = 3e-05 Identities = 23/48 (47%), Positives = 31/48 (64%) Frame = +2 Query: 1709 TRPGEWVLDPFAGSGTTLIEARRLGRNAIGVELQPAMVRHVEELLAAE 1852 T PG VLDPFAG+GTT + A+R GR IGV+L P V ++ + + Sbjct: 377 TNPGI-VLDPFAGAGTTCLVAKRFGRRFIGVDLNPEFVAMAQQRIGLD 423 >ref|NP_818050.1|gp77 Length = 217 Score = 46.2 bits (108), Expect = 3e-05 Identities = 22/32 (68%), Positives = 25/32 (78%) Frame = +2 Query: 1715 PGEWVLDPFAGSGTTLIEARRLGRNAIGVELQ 1810 P V DPFAGSG+TL+ AR LGR AIGVEL+ Sbjct: 164 PDGVVADPFAGSGSTLVAARNLGRKAIGVELE 195 >ref|YP_077259.1|Cytosine methylase, similar to N4-cytosine methylase Length = 297 Score = 45.8 bits (107), Expect = 4e-05 Identities = 24/61 (39%), Positives = 37/61 (60%) Frame = +2 Query: 1670 FVPQIPHQFIRRYTRPGEWVLDPFAGSGTTLIEARRLGRNAIGVELQPAMVRHVEELLAA 1849 F +IP++ I+ ++ GE VLDPF GS TTL A L R A+G E+ ++ V++ L Sbjct: 197 FPEEIPYRLIKLFSYVGETVLDPFMGSATTLKVAVELRRKAVGYEIDLELLDVVKKKLGI 256 Query: 1850 E 1852 + Sbjct: 257 D 257 >ref|NP_599080.1|unknown Length = 350 Score = 45.8 bits (107), Expect = 4e-05 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Frame = +2 Query: 1691 QFIRRYTRPGEWVLDPFAGSGTTLIEARRLGRNAIGVELQP----AMVRHVEELL 1843 Q I +RPG+ V D F GSG+T+ A LGR A+GVEL+ MV+ V EL+ Sbjct: 294 QIINASSRPGDLVADFFMGSGSTIKAAMALGRQALGVELESERFNQMVKEVSELV 348 >ref|NP_818049.1|gp76 Length = 224 Score = 45.8 bits (107), Expect = 4e-05 Identities = 21/28 (75%), Positives = 24/28 (85%) Frame = +2 Query: 1727 VLDPFAGSGTTLIEARRLGRNAIGVELQ 1810 V DPFAGSG+TL+ AR LGR AIGVEL+ Sbjct: 175 VADPFAGSGSTLVAARNLGRRAIGVELE 202 >ref|NP_046948.1|gp52 Length = 284 Score = 45.8 bits (107), Expect = 4e-05 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Frame = +2 Query: 1697 IRRYTRPGEWVLDPFAGSGTTLIEARRLGRNAIGVELQP----AMVRHVEELLAAE 1852 IR +RPG+ V D F GSG+T+ EA +LGR AIGVE++ V V+E++ E Sbjct: 227 IRSSSRPGDVVADFFMGSGSTIKEALKLGRKAIGVEIEEERYLQTVEEVKEVVKKE 282 >ref|NP_543076.1|putative DNA methylase Length = 352 Score = 45.1 bits (105), Expect = 6e-05 Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Frame = +2 Query: 1691 QFIRRYTRPGEWVLDPFAGSGTTLIEARRLGRNAIGVELQPA----MVRHVEELLA 1846 Q I +RPG+ V D F GSG+T+ A LGR AIGVEL+ VR V++L++ Sbjct: 294 QIITTSSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELETGRFEQTVREVQDLVS 349 >ref|NP_892105.1|DNA adenine-methylase Length = 357 Score = 43.5 bits (101), Expect = 2e-04 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Frame = +2 Query: 1709 TRPGEWVLDPFAGSGTTLIEARRLGRNAIGVEL-QPAMVRHVEELLAAE 1852 TRPG+ V D F GSG T+ A +LGR ++GVEL + ++ V EL A E Sbjct: 306 TRPGDLVADFFMGSGATIKAAEQLGRRSLGVELEEERFLQTVSELKALE 354 >ref|YP_077254.1|Cytosine methylase, similar to PspGI methylase Length = 412 Score = 42.7 bits (99), Expect = 3e-04 Identities = 20/52 (38%), Positives = 29/52 (55%) Frame = +2 Query: 1658 YWGNFVPQIPHQFIRRYTRPGEWVLDPFAGSGTTLIEARRLGRNAIGVELQP 1813 Y F+PQ+ ++ Y +PG V DPFAG GT + +R G + + EL P Sbjct: 38 YPAKFIPQVVAYILKTYCKPGMKVFDPFAGYGTVGVVSRVYGHSYVLWELNP 89 >ref|YP_006632.1|putative DNA adenine methylase Length = 353 Score = 42.7 bits (99), Expect = 3e-04 Identities = 23/44 (52%), Positives = 28/44 (63%) Frame = +2 Query: 1679 QIPHQFIRRYTRPGEWVLDPFAGSGTTLIEARRLGRNAIGVELQ 1810 Q+ I TRPG+ V D F GSG T+ A +LGR AIGVEL+ Sbjct: 296 QMMLDIISASTRPGDVVADFFMGSGATIKAALQLGREAIGVELE 339 >ref|NP_958699.1|adenine DNA methyltransferase Length = 251 Score = 40.8 bits (94), Expect = 0.001 Identities = 24/49 (48%), Positives = 27/49 (55%) Frame = +2 Query: 1703 RYTRPGEWVLDPFAGSGTTLIEARRLGRNAIGVELQPAMVRHVEELLAA 1849 R PG VLDPFAGSGTT + A GR IG+E + A LAA Sbjct: 191 RPVMPGGVVLDPFAGSGTTGVAAVLSGRRFIGIERETAYAEISRTRLAA 239 >ref|NP_038314.1|ORF13 Length = 250 Score = 37.7 bits (86), Expect = 0.010 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Frame = +2 Query: 1691 QFIRRYTRPGEWVLDPFAGSGTTLIEARRLGRNAIGVELQPAMVRHVE-ELLAAEPT 1858 + I +T P + V+DP AGSG+T+ A + RNA G E++ + + E+L+ T Sbjct: 191 RLIELFTDPEDVVIDPVAGSGSTIRAAVEMNRNAYGFEIKKEFYKKAQSEMLSTFQT 247 >ref|NP_108695.1|putative methylase Length = 252 Score = 37.4 bits (85), Expect = 0.013 Identities = 18/54 (33%), Positives = 30/54 (55%) Frame = +2 Query: 1691 QFIRRYTRPGEWVLDPFAGSGTTLIEARRLGRNAIGVELQPAMVRHVEELLAAE 1852 + I +T G+ ++DP GSG+T+ + LGRNA G E++ +E + E Sbjct: 191 RLIEIFTDKGDTIIDPCMGSGSTIRASIELGRNAYGFEIKKDFYNLAKEKMLKE 244 >ref|NP_817550.1|gp101 Length = 231 Score = 36.2 bits (82), Expect = 0.029 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Frame = +2 Query: 1697 IRRYTRPGEWVLDPFAGSGTTLIEARRLGR-NAIGVELQPAMVRHVEELL 1843 ++ T PG VLDPFAGSGTT +EA L + I +E +P + +E+ L Sbjct: 177 VKLVTPPGGVVLDPFAGSGTT-VEACLLEKFRCIAIENEPDYIPLIEQRL 225 >ref|NP_705636.1|gp10 Length = 262 Score = 34.7 bits (78), Expect = 0.084 Identities = 18/36 (50%), Positives = 21/36 (58%) Frame = +2 Query: 1697 IRRYTRPGEWVLDPFAGSGTTLIEARRLGRNAIGVE 1804 IR YT G+ VLD GSGTT + GR IG+E Sbjct: 201 IRTYTSEGDTVLDNCMGSGTTGVACINTGRRFIGME 236 >ref|NP_958114.1|gp10 Length = 262 Score = 34.7 bits (78), Expect = 0.084 Identities = 18/36 (50%), Positives = 21/36 (58%) Frame = +2 Query: 1697 IRRYTRPGEWVLDPFAGSGTTLIEARRLGRNAIGVE 1804 IR YT G+ VLD GSGTT + GR IG+E Sbjct: 201 IRTYTSEGDTVLDNCMGSGTTGVACINTGRRFIGME 236 >ref|NP_818455.1|gp155 Length = 436 Score = 33.1 bits (74), Expect = 0.24 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = +2 Query: 1715 PGEWVLDPFAGSGTTLIEARRLGRNAIGVELQPAMVRHVEE 1837 PG +LDPFAGSGTT+ G + I +E + + +E+ Sbjct: 389 PGGVILDPFAGSGTTVEACLLEGFDCIAIESEADYIPLIEQ 429 >ref|NP_542291.1|unknown Length = 355 Score = 32.3 bits (72), Expect = 0.42 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = -1 Query: 2869 HSARPPEEFDIFKEGPIGESTQCREEITPQHHTLVAVAGKQR 2744 H RP + DIF++GP G QCR+ +V AG QR Sbjct: 278 HRLRPGLDHDIFRQGPDGLGEQCRK--------IVTAAGDQR 311 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,307,783 Number of Sequences: 14420 Number of extensions: 488522 Number of successful extensions: 1591 Number of sequences better than 0.5: 20 Number of HSP's better than 0.5 without gapping: 1373 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1591 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 2040791442 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig803 (2946 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,644,503 Number of Sequences: 14420 Number of extensions: 336875 Number of successful extensions: 1131 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 988 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1131 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1432717364 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig804 (3562 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,226,228 Number of Sequences: 14420 Number of extensions: 454528 Number of successful extensions: 1524 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1315 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1524 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1747655488 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig805 (3554 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817395.1|gp57 32 0.36 >ref|NP_817395.1|gp57 Length = 287 Score = 32.3 bits (72), Expect = 0.36 Identities = 31/120 (25%), Positives = 43/120 (35%) Frame = +3 Query: 294 AGNAHAGGSCTVSISGRASDAAFWSASGIDSWDAVGLSRNADRWGGGDQPLILALSGWSV 473 AG S S +G A+ +A WSA+G + A G + + W + WS Sbjct: 135 AGEVPFAWSAAWSAAGSAAWSAAWSAAGSAARSAAGSAAGSAAWSAAGS------AAWSA 188 Query: 474 SGWYGPRHYRSEPICGSRCSATRPAGGSHQHRCLCGHDWCSWWAVAGRTAWPDRSSRWLA 653 + W SA A GS W + W+ AG AW S+ W A Sbjct: 189 A-W----------------SAAESAAGSAA--------WSAAWSAAGSAAW---SAAWSA 220 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,274,296 Number of Sequences: 14420 Number of extensions: 417806 Number of successful extensions: 1230 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1081 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1227 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1744442886 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig806 (3472 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_064745.1|gp7 34 0.091 >ref|NP_064745.1|gp7 Length = 540 Score = 34.3 bits (77), Expect = 0.091 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 2/132 (1%) Frame = +1 Query: 2191 SQTAQRLSGARPAAMSACATTAGV*W*SVRIAALDAVSTAGMMAANGRPCALSKTASC-- 2364 ++ ++ +G A + AT AG + +A + ++A A + A S +A+ Sbjct: 101 AEASETAAGLSATAAATSATNAGASETAASASATASATSATNSATSASQAATSASAAAVS 160 Query: 2365 QGSASAANASCAEVGAGTISSASGGNTRRRLLPMPYQSGSPDASTTATSPFCHAACRRVS 2544 +G+A+ + + A SAS T+ + + + AS ATS AA + + Sbjct: 161 EGNAATSETNAANSATSASGSASTATTQASAASVSATNAATSASNAATSATNAAASQAAA 220 Query: 2545 AGSTLASIVNRS 2580 A S + + S Sbjct: 221 ATSETNAAASES 232 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,890,195 Number of Sequences: 14420 Number of extensions: 414508 Number of successful extensions: 1426 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1215 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1421 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1699466458 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig807 (3864 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,968,362 Number of Sequences: 14420 Number of extensions: 456028 Number of successful extensions: 1395 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1168 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1395 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1891154628 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig808 (3777 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_943898.1|gp44 clamp loader subunit 35 0.044 ref|YP_024820.1|Pas34 33 0.17 >ref|NP_943898.1|gp44 clamp loader subunit Length = 321 Score = 35.4 bits (80), Expect = 0.044 Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 1/203 (0%) Frame = +3 Query: 1593 ITQARQVLDEDHYDLERIKERIIEYLAVRKLRREEGADNEARGP-ILCFVGPPGVGKTSL 1769 IT ++ + E Y I E I L + R +G R P IL F PG GKT++ Sbjct: 5 ITDPKEFMWEQKYRPALISECI---LPSADIERFKGIVTTGRIPHILLFSKSPGTGKTTM 61 Query: 1770 GASIARALGRKFVRVALGGVRDEAEIRGHRRTYIGALPGRIIQGLSRAKSNNPVLLLDEV 1949 + + + + ++ G +R + ++R + + K V+++DE Sbjct: 62 ARVLCNEIDAEVMFISGGKLRID-DLRNDLTAFASTM---------TRKPGGKVIIIDEG 111 Query: 1950 DKLSIGFQGDPAAALLEVLDPEQNVAFVDRYLDVPFDLSKVLFVCTANRADTIPPALLDR 2129 D + + + +E +V + T N + IP L R Sbjct: 112 DNKGMKAVHEELRSWMEAFSSNCSV------------------IMTCNNVEAIPGPLKSR 153 Query: 2130 MELLELAGYTEQEKLEIARRYLI 2198 +E T+ +KL + + ++ Sbjct: 154 FRQIEFGNPTQDDKLRMMKEMIV 176 >ref|YP_024820.1|Pas34 Length = 596 Score = 33.5 bits (75), Expect = 0.17 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%) Frame = -1 Query: 1221 REPFADRRDSDSGWPRSD--RPACPDGERSRRQSP--VHRANSDFAQRSAGNLPVPLAPG 1054 R+ F R + W D R + RR P + N+D QR G+ P P+A Sbjct: 207 RDQFTRDRRAYESWKHGDVFRTDVAEVRHLRRGRPEVTNEKNTDRTQRVVGSGPRPVAAR 266 Query: 1053 RWSPSKHQLDRERP*RAPGD 994 + +P + ++DR P A G+ Sbjct: 267 QGAPRRREVDRSGPTSARGN 286 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,305,838 Number of Sequences: 14420 Number of extensions: 344159 Number of successful extensions: 1202 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1087 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1202 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1844990079 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig809 (3316 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,744,770 Number of Sequences: 14420 Number of extensions: 413234 Number of successful extensions: 1128 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1009 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1127 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1615938806 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig810 (3711 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_705643.1|gp17 37 0.012 ref|NP_958122.1|gp17 37 0.012 ref|NP_944326.1|gp18 36 0.026 ref|NP_899408.1|NMN adenylyl tranferase 34 0.13 ref|NP_861819.1|NudE nudix hydrolase 33 0.22 >ref|NP_705643.1|gp17 Length = 695 Score = 37.4 bits (85), Expect = 0.012 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = -3 Query: 2572 EILLIRKRKGFWSLPKGKLKRDEPALEAIVREVREET 2462 ++LL+++ G W LP GK++ +E EA RE REET Sbjct: 587 KVLLMKRPAGDWGLPAGKVEGNETPEEAARRETREET 623 >ref|NP_958122.1|gp17 Length = 694 Score = 37.4 bits (85), Expect = 0.012 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = -3 Query: 2572 EILLIRKRKGFWSLPKGKLKRDEPALEAIVREVREET 2462 ++LL+++ G W LP GK++ +E EA RE REET Sbjct: 586 KVLLMKRPAGDWGLPAGKVEGNETPEEAARRETREET 622 >ref|NP_944326.1|gp18 Length = 698 Score = 36.2 bits (82), Expect = 0.026 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = -3 Query: 2572 EILLIRKRKGFWSLPKGKLKRDEPALEAIVREVREET-HVTAEVVDMLGSID 2420 ++LL+++ G W LP GK++ E EA RE EET H V+ LG D Sbjct: 590 KVLLMKRPAGDWGLPAGKVEDGETPEEAARRETLEETGHAGDYVLAPLGKYD 641 >ref|NP_899408.1|NMN adenylyl tranferase Length = 341 Score = 33.9 bits (76), Expect = 0.13 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 14/116 (12%) Frame = -3 Query: 2569 ILLIRKR----KGFWSLPKGKLKRDEPALEAIVREVREETHVTAEVVDMLGSI--DYLIS 2408 +LL+ ++ KG +LP G E L+A +RE++EET++ + GS+ + + Sbjct: 214 VLLVERKFNPGKGCLALPGGHKHEKETFLDAAIRELQEETNIKVPEKVLRGSLVGEKMFD 273 Query: 2407 GPRGQ--QRKIVDYYLLRAIKG------RARPTGGSEQIVAVDWVPLAEAIDRLQR 2264 P +I Y L+ + +P ++ V+ W PL+E D +R Sbjct: 274 NPNRSYPHTRITMAYHLKVHPNPDNTFPKVKP---ADDAVSAKWYPLSEVRDMQER 326 >ref|NP_861819.1|NudE nudix hydrolase Length = 152 Score = 33.1 bits (74), Expect = 0.22 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -3 Query: 2539 WSLPKGKLKRDEPALEAIVREVREETHVT 2453 W +PKG+++ E +EA +RE EET T Sbjct: 42 WDIPKGRVEPGESPIEAAIRECEEETGFT 70 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,773,856 Number of Sequences: 14420 Number of extensions: 453400 Number of successful extensions: 1266 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 1142 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1265 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1827970538 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig811 (2511 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,578,414 Number of Sequences: 14420 Number of extensions: 329455 Number of successful extensions: 939 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 865 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 939 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1210004340 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig812 (3931 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,962,606 Number of Sequences: 14420 Number of extensions: 493012 Number of successful extensions: 1497 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1315 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1491 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1926176010 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig813 (3033 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,927,487 Number of Sequences: 14420 Number of extensions: 370315 Number of successful extensions: 1059 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 952 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1059 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1479718273 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig814 (3914 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_795402.1|large terminase subunit 34 0.10 ref|NP_056689.1|putative minor tail protein 33 0.18 >ref|NP_795402.1|large terminase subunit Length = 576 Score = 34.3 bits (77), Expect = 0.10 Identities = 21/91 (23%), Positives = 42/91 (46%) Frame = +1 Query: 2647 VESPDISTTTNVDYTYEPGEEEVLNSILPRYVETQIYQAVLESIASEHSARMVAMRNATN 2826 +++ ++S N + + +E+ N++ +IY I S H+ ++ R + Sbjct: 118 IKNYNVSLVANSEDQAKTSFDEIYNTVESNPKLKEIYYNTKSEIKSIHTNSVMRFRTSNG 177 Query: 2827 NAKDLVRDLTLSFNKARQAAITKEVSEIASG 2919 N KD +RD + F++ Q K+V SG Sbjct: 178 NTKDGLRDGMVVFDEIHQYESNKDVRVHKSG 208 >ref|NP_056689.1|putative minor tail protein Length = 1510 Score = 33.5 bits (75), Expect = 0.18 Identities = 57/244 (23%), Positives = 97/244 (39%), Gaps = 20/244 (8%) Frame = +2 Query: 497 LQPRQVNVGTVIAVGDGVARLSGLDQVVASEIVEFPP---KAGRNESIYGIALNLEQDSV 667 L P +GT A+G+ ++ +S + PP R + G A++ +++ Sbjct: 647 LSPLVEAIGT--ALGNAAPFITAFGNAFSSILSVLPPVIDALSRFATALGTAISGIAEAI 704 Query: 668 AAIILGDDETIEE-----GDMVTSTGRVIS---VPVGQGL------LGRVVNPLGQPIDG 805 I +TI D + + +IS V V Q + + V++ + Q I Sbjct: 705 TPIFQIISDTITSITQIIADAIVAIAPIISDCIVQVAQVIGQFGPQIAMVISAIAQAIQA 764 Query: 806 KGPIVYEKTRPIERIAPGVITRKSVDTPVQTGIIAI-DALIPI-GRGQRELIIGDRQTGK 979 PI+ T I+ I V T V + V + I+A+ L PI + ++ Q Sbjct: 765 AAPII---TTLIQGIVAAVQTMAPVMSQVISAIVAVVQTLAPIISQIISAIVTAITQIVP 821 Query: 980 TAVAIDTILNQKGQGMVCIYVAIGQRRAQVAQVVGTLERFGAMEYTIVVSATASE-SAAL 1156 +I +++ G+ I A G A A +GT ++SAT S +AL Sbjct: 822 IINSIGGVISAALSGIASIVSAAGMAIATAAMGIGTAISTALSGVASIISATGSAIGSAL 881 Query: 1157 QYIA 1168 Q IA Sbjct: 882 QGIA 885 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,751,221 Number of Sequences: 14420 Number of extensions: 462360 Number of successful extensions: 1571 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1377 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1571 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1918216605 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig815 (3823 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_835600.1|putative glycosyltransferases 37 0.015 ref|NP_818571.1|gp33 34 0.13 >ref|NP_835600.1|putative glycosyltransferases Length = 484 Score = 37.0 bits (84), Expect = 0.015 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Frame = -3 Query: 311 EHTLFV--------GRLNDEELHSLYEEIDLFVHPTRYEGSSLVTLEAMIHRRPVVASAI 156 EH +F+ G + EE+ LY D+ + + EG + +LEA + PVVA+ Sbjct: 275 EHIVFISNDEVFHNGGFSREEIALLYNGADVVLQLSSNEGFGIASLEASLCGAPVVATMT 334 Query: 155 GGIPDK 138 GGI D+ Sbjct: 335 GGIADQ 340 >ref|NP_818571.1|gp33 Length = 2047 Score = 33.9 bits (76), Expect = 0.13 Identities = 22/60 (36%), Positives = 26/60 (43%) Frame = +1 Query: 1726 KPV*TRSRQGATCCRWLASRMFAPPGGDTLRNTGTVGWCRFGGRAGGSRSQAPCGTRGQW 1905 +P RS A WLASR F +R TG G R G AG ++ P GT W Sbjct: 1648 RPTGGRSMSTANAAEWLASRGF-------VRGTGGPGDFRVGYNAGHMQATLPGGTNFNW 1700 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,594,947 Number of Sequences: 14420 Number of extensions: 476873 Number of successful extensions: 1417 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1215 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1415 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1868868294 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig816 (3695 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,377,069 Number of Sequences: 14420 Number of extensions: 405217 Number of successful extensions: 1148 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1037 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1148 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1819939033 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig817 (2384 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 33 0.11 ref|NP_817990.1|gp17 32 0.40 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 33.5 bits (75), Expect = 0.11 Identities = 44/138 (31%), Positives = 53/138 (38%), Gaps = 6/138 (4%) Frame = +3 Query: 345 RRHPAV-PIPDHHPALPIPDHQNVPGPTRRNQRHPAIRPGSPRQLPSGSRPPPESPLPEY 521 R HP + P D P P PDH P RR PA PR+ P +R P + PE Sbjct: 36 RPHPHLGPARDRSPDHPEPDH-----PCRRAPSRPA---AGPRRHPPVARTRPRTRAPEC 87 Query: 522 ---DGRA--PAQP*CA*ATSARSDNHGAAADAIPLRQRYCYPGERSEIALHHLQPGRDAT 686 G A PA P CA A A + A A+ R C G HHL+ T Sbjct: 88 APDPGPAVHPAAPGCAPAAPAAPE----YAPALRPRAPECDRG------AHHLRTRAPRT 137 Query: 687 AQPDCQ*SPHQPLPLRPG 740 + +PL PG Sbjct: 138 RT--------RAVPLGPG 147 >ref|NP_817990.1|gp17 Length = 1183 Score = 31.6 bits (70), Expect = 0.40 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 2/85 (2%) Frame = -3 Query: 981 ACGAPSGPTVAGS-PTTGNPQTPPSPEAGGTSGTVPAPDDAIARVGEEFILRRDFDRLYL 805 + G P GP AG P G+ ++G T G +PA + G F+ LY Sbjct: 879 SAGLPPGPVGAGGQPVQGSDGAALPTDSGRTEGYIPAGAGNTSVAGTSFV-----SGLYN 933 Query: 804 PGADPQN-LIDQMIDVELVVQAALA 733 GA+ N LIDQ +A A Sbjct: 934 MGAEAINGLIDQAASAAATAASAAA 958 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,421,234 Number of Sequences: 14420 Number of extensions: 294111 Number of successful extensions: 1043 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 861 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1040 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1153043139 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig818 (2652 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958295.1|hypothetical protein 32 0.45 >ref|NP_958295.1|hypothetical protein Length = 215 Score = 31.6 bits (70), Expect = 0.45 Identities = 23/61 (37%), Positives = 25/61 (40%) Frame = +2 Query: 1214 HCSRSRQPAAGSRASADRHYDPGEMPHYPVPRHGCRGCRAPAPPGTPETCSARRSTCHRG 1393 HCS S PA+ S A R P P CR R P GTP CSA + R Sbjct: 24 HCSAS--PASCSDGPAPRSTRPPSPP--------CRPSRPPCTAGTPTACSAGPAVPMRA 73 Query: 1394 A 1396 A Sbjct: 74 A 74 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,970,730 Number of Sequences: 14420 Number of extensions: 234358 Number of successful extensions: 733 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 670 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 733 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1286855967 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig819 (3972 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_064745.1|gp7 39 0.006 ref|NP_803295.1|tape measure protein 32 0.40 >ref|NP_064745.1|gp7 Length = 540 Score = 38.5 bits (88), Expect = 0.006 Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 13/155 (8%) Frame = -2 Query: 2690 ALKAAATNAGNRNCRWACKIAVTMPEMPINVTAGSSQPTSATASACNADSVGLVSRAIAS 2511 A +ATNAG + + + T+ S TSA+A+A + + A+ Sbjct: 114 AAATSATNAGASETAASASATASATSATNSATSASQAATSASAAAVSEGNAATSETNAAN 173 Query: 2510 GACQASMALAMTSTVQASVMTVETTYQNSSRSRSAYSL-------------NTGTRAALT 2370 A AS A T+T QAS +V T +S S +A S T A+ + Sbjct: 174 SATSAS-GSASTATTQASAASVSATNAATSASNAATSATNAAASQAAAATSETNAAASES 232 Query: 2369 APLMSNS*SAFGIVHARVKASTASPRLK*AAMIGS 2265 S + +A +A ASTA+ + AA S Sbjct: 233 TVTTSATNAATSEANAATSASTATTQATNAATSAS 267 >ref|NP_803295.1|tape measure protein Length = 910 Score = 32.3 bits (72), Expect = 0.40 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Frame = +1 Query: 2512 LAIALLTRPTESALQAEAVALVGWLL------PAVTLMGISGIVTAILHAQRQFLLPAFV 2673 +A A P SA+ AVA+ GW+ PA + G++ ++ A R FL+P + Sbjct: 321 VAFATAMAPIASAVLRVAVAITGWIANLFEAHPATA--QLVGVIITLVGAFR-FLIPIIL 377 Query: 2674 AAA--FNAGMIVGIVTLAPHVGVKSLAAGTLIGAAAQLIIQLP 2796 A + G+I I+ L G+ L AG I A ++++ P Sbjct: 378 AVSNFMGGGLIGRIIALVSKFGL--LRAGLTILKGAFMLLKGP 418 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,196,820 Number of Sequences: 14420 Number of extensions: 450650 Number of successful extensions: 1208 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1081 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1207 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1948462344 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig820 (3866 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,609,642 Number of Sequences: 14420 Number of extensions: 446689 Number of successful extensions: 1281 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1121 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1279 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1892746509 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig821 (2996 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_891582.1|Dda DNA helicase 33 0.13 >ref|NP_891582.1|Dda DNA helicase Length = 463 Score = 33.5 bits (75), Expect = 0.13 Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 11/176 (6%) Frame = +1 Query: 61 EFLATRERNLLAKILALGGVQQAEIFEIQVKARLHPAD----VERVLAVLNHPAITVTKT 228 E + T E L +ILA ++ EI V+ R++ D V+ +L V P I + Sbjct: 223 ETVKTPEDLLENRILAYTNKSVEKLNEI-VRKRVYNTDEPVIVDEIL-VTQEPLIEYLR- 279 Query: 229 SERTQYDTYFIFANGERIRIREDHRTD-----PGARPQPKYTLTLMAEARRFDHPKAMML 393 ER + IF NGE IR++E + G PQP TL E+ D K ++ Sbjct: 280 DERGKKIPNVIFNNGEMIRVKEVIPREFTLRCTGVEPQPVLGYTLKVESVDDDEDKEILN 339 Query: 394 SRARYTAPADHTVRFYREYFQPDRIE--ELEKQRRRWRILYRDHDFAINLDTLIGQ 555 + A T + PD +E L +QR++ + F+I L+T+ GQ Sbjct: 340 QKVGLDAVGITTDK-------PDLVEINILTEQRQK-------NIFSIYLNTVAGQ 381 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,577,413 Number of Sequences: 14420 Number of extensions: 384492 Number of successful extensions: 1253 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1252 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1460269621 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig822 (3668 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542296.1|unknown 33 0.22 >ref|NP_542296.1|unknown Length = 111 Score = 33.1 bits (74), Expect = 0.22 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Frame = -1 Query: 3263 CGAKRAKSILRRCSSISL-TAGSPPTAATLSISSHTSRS*CLGKNASARSVSAYRCAGRP 3087 CGA + + + CS S+ T T TL C + ASA + S GRP Sbjct: 12 CGAAQ-RPLSPACSLASVPTRPGALTTTTLPAFRPIGPRRCRARRASAITCSTIPSPGRP 70 Query: 3086 TFRRRPQTYTSPSCSRAVRCWRIPTAPIASAS 2991 RRRP+ SP+ SR + P ++ S Sbjct: 71 GPRRRPRHSASPATSRGAARPKSHLTPCSAVS 102 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,955,461 Number of Sequences: 14420 Number of extensions: 398912 Number of successful extensions: 1270 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1265 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1805482324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig823 (5428 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,766,225 Number of Sequences: 14420 Number of extensions: 620461 Number of successful extensions: 1916 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1916 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2668110987 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig824 (3384 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_195210.1|virion structural protein 32 0.34 >ref|YP_195210.1|virion structural protein Length = 1177 Score = 32.3 bits (72), Expect = 0.34 Identities = 32/126 (25%), Positives = 47/126 (37%) Frame = -3 Query: 1786 VTNHHVVAGATNIQVRFANGATVLADLVGSDPDSDLAVIRLTNXXXXXXXXXXGDSGALQ 1607 ++N VA +N FA+ T L G DS + N S Sbjct: 560 LSNGGTVAYTSNTLAVFAS--TTSNQLRGVISDSTGVGKAVFNQNPSFADSITTSSSTFS 617 Query: 1606 VGQTAVAIGSPFGEQNTLTVGVISGLGRTLRAPARSFGSFSIPNVIQTDAAINPGNSGGP 1427 V T V + FG T+T+G IS G+ +I N +Q D + GN G Sbjct: 618 VFNTGVTNINAFGAATTITMGAIS-------------GTTTIRNSLQVDGSATIGNESGD 664 Query: 1426 LLNLRG 1409 ++ + G Sbjct: 665 IITVNG 670 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,553,661 Number of Sequences: 14420 Number of extensions: 407902 Number of successful extensions: 1348 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1140 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1346 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1652883729 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig825 (4072 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,526,466 Number of Sequences: 14420 Number of extensions: 497659 Number of successful extensions: 1487 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1300 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1487 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 2000994417 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig826 (4133 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046877.1|putative non-heme haloperoxidase 43 3e-04 ref|NP_817650.1|gp61 37 0.013 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 42.7 bits (99), Expect = 3e-04 Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 2/103 (1%) Frame = +3 Query: 2832 GVPLIFVHGAGGSGRHWGRLFALLPPT-VQFIAVDLPGHGRS-PLAGPITIERYXXXXXX 3005 G PL+F+HG S + + + L + IA+D HGRS L T+E Sbjct: 22 GAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTGHTVEDMTRVTLK 81 Query: 3006 XXXXXXXXXXXXXGHSMGGAIALQLAITTPQIVAGLGLFGSAA 3134 GHSMGG + +++A P VA L +AA Sbjct: 82 TLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDAAA 124 >ref|NP_817650.1|gp61 Length = 274 Score = 37.4 bits (85), Expect = 0.013 Identities = 54/235 (22%), Positives = 80/235 (34%), Gaps = 7/235 (2%) Frame = +3 Query: 2832 GVPLIFVHGAGGSGRHWGRLFALLPPT-VQFIAVDLPGHGRSP-LAGPITIERYXXXXXX 3005 GVPL+F+HG S + L L A+D HGR+ L T+E Sbjct: 24 GVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFGHTVEEMTRVTLR 83 Query: 3006 XXXXXXXXXXXXXGHSMGGAIALQLAITTPQIVAGLGLFGSAARLRVAPALLDGLAGDEA 3185 GHSMGG + ++A P+ V L +AA L D L + Sbjct: 84 ALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILLDAAAGKEHHANLKDPLRATQR 143 Query: 3186 TRQATITTL-----VTWLFSPAADPTLFAEARAEYAALDPAILLADFQACDGFDVRNRLG 3350 A + L L S L R+ +A D + + Sbjct: 144 LSGAVVDVLGDTYQAIKLRSATEGLGLAQTLRSSFAGFRFVRAAYALLKADTEPLLKAMK 203 Query: 3351 DIHCPALVITGSDDRLTPPKLGAELASGLGVPHHLLANVGHMPMLEAPDQLSELL 3515 + VI G D++ P G A G + + H ML P+ +E++ Sbjct: 204 ALDVQTAVIHGLSDQIVPFAAGKSAAEASGGALYAVEGF-HSWMLADPELAAEVI 257 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,811,510 Number of Sequences: 14420 Number of extensions: 530306 Number of successful extensions: 1698 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1290 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1689 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 2034423918 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig827 (4421 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,081,123 Number of Sequences: 14420 Number of extensions: 524653 Number of successful extensions: 1410 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1231 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1409 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2165853953 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig828 (3704 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_705683.1|gp59 34 0.098 ref|NP_958164.1|gp58 34 0.098 >ref|NP_705683.1|gp59 Length = 361 Score = 34.3 bits (77), Expect = 0.098 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = -1 Query: 1910 AEAGGETASAFTCQRIKHCRQLCRTWWSENNRQRCSPAPADD--AISID 1770 +E G + + T ++I+ R+ R WW+ + + +P+PAD+ A+S D Sbjct: 131 SETGADDLTHLTDEQIEKSREAVREWWARRDALQPAPSPADERAALSTD 179 >ref|NP_958164.1|gp58 Length = 361 Score = 34.3 bits (77), Expect = 0.098 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = -1 Query: 1910 AEAGGETASAFTCQRIKHCRQLCRTWWSENNRQRCSPAPADD--AISID 1770 +E G + + T ++I+ R+ R WW+ + + +P+PAD+ A+S D Sbjct: 131 SETGADDLTHLTDEQIEKSREAVREWWARRDALQPAPSPADERAALSTD 179 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,328,821 Number of Sequences: 14420 Number of extensions: 387716 Number of successful extensions: 1124 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1038 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1124 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1824757936 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig829 (4638 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,701,795 Number of Sequences: 14420 Number of extensions: 577203 Number of successful extensions: 1761 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1526 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1760 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2279431145 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig830 (3602 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003922.1|hypothetical protein 37 0.019 >ref|YP_003922.1|hypothetical protein Length = 150 Score = 36.6 bits (83), Expect = 0.019 Identities = 18/44 (40%), Positives = 27/44 (61%) Frame = +2 Query: 3269 GQLDERHIEQNSQRRLGTDQLPGQRMGSGIAKCRQQHGQRSRMN 3400 G++D+RHI N+ R G D+ P QR G I K + G R+R++ Sbjct: 11 GEIDKRHINGNNGTRRGKDKKPRQRCGFYIHKEETRAGLRARLD 54 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,818,627 Number of Sequences: 14420 Number of extensions: 405064 Number of successful extensions: 1298 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1298 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1770143702 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig831 (2833 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542296.1|unknown 37 0.015 ref|NP_958267.1|hypothetical protein 35 0.044 ref|NP_570320.1|PspA-like protein 33 0.22 ref|NP_958266.1|hypothetical protein 32 0.28 ref|NP_818167.1|gp94 32 0.48 >ref|NP_542296.1|unknown Length = 111 Score = 36.6 bits (83), Expect = 0.015 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 5/86 (5%) Frame = +3 Query: 2580 TRQNERETTNIPETTTRNLGSRREKSRNAHPQGHNTANHKPTPGQPGARQ--HHSPAPPT 2753 TR TT +P R +G RR ++R A T + P+PG+PG R+ HS +P T Sbjct: 30 TRPGALTTTTLP--AFRPIGPRRCRARRASAI---TCSTIPSPGRPGPRRRPRHSASPAT 84 Query: 2754 GR---RPHKRDPPPSAHNTPQKQTHT 2822 R RP P SA + ++ H+ Sbjct: 85 SRGAARPKSHLTPCSAVSRRRQTAHS 110 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 35.0 bits (79), Expect = 0.044 Identities = 31/106 (29%), Positives = 37/106 (34%), Gaps = 9/106 (8%) Frame = +2 Query: 2504 NTRRSSTAHTPREKNN-PRTETPKRTHTTERKRDNQHT-----RNHD-PKPGLQAREKPE 2662 + RR A P + PRT R H R R + H R+ D P+P R P Sbjct: 4 DARRLRRARPPHTRTPAPRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRAPS 63 Query: 2663 RAPAGAQHSKPQTNARPARST--TTPQPRTANRETAAQTRPATERA 2794 R AG + P RP P P A A PA A Sbjct: 64 RPAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAA 109 >ref|NP_570320.1|PspA-like protein Length = 115 Score = 32.7 bits (73), Expect = 0.22 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +1 Query: 217 APASDLADSPVPLRAQPVADSPLQSSRQPPPVRPESDPSG 336 AP + A SP P A PVA P++ + P + P + SG Sbjct: 50 APQPESAPSPAPESAPPVASGPVEEKKGPGALGPSAQVSG 89 >ref|NP_958266.1|hypothetical protein Length = 438 Score = 32.3 bits (72), Expect = 0.28 Identities = 20/62 (32%), Positives = 24/62 (38%) Frame = +1 Query: 1945 IPHRSFPPPAGAGESGSVTPPHRWERAPPARNTASNHPPCLLPAGYRHPAPAHDSANHPT 2124 IP + P P +G+ PP R P P C+ PA H PA HP Sbjct: 320 IPELTAPEPVPTFAAGAPHPPRVHARIPDP--DPDGEPECVDPAPETHSHPAPAPEVHPN 377 Query: 2125 PV 2130 PV Sbjct: 378 PV 379 >ref|NP_818167.1|gp94 Length = 1277 Score = 31.6 bits (70), Expect = 0.48 Identities = 19/48 (39%), Positives = 24/48 (50%) Frame = +3 Query: 2661 NAHPQGHNTANHKPTPGQPGARQHHSPAPPTGRRPHKRDPPPSAHNTP 2804 N P G + PTPGQPG +++PA P G P P+ NTP Sbjct: 751 NNGPHGAAGSATNPTPGQPG---NNTPAAP-GAAPKNNLAGPAGTNTP 794 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,475,896 Number of Sequences: 14420 Number of extensions: 319979 Number of successful extensions: 1084 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 894 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1079 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1384964427 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig832 (4004 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_859269.1|hypothetical protein 33 0.24 ref|NP_612903.1|hypothetical protein 33 0.24 ref|NP_859103.1|hypothetical protein 33 0.24 >ref|NP_859269.1|hypothetical protein Length = 196 Score = 33.1 bits (74), Expect = 0.24 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 13/76 (17%) Frame = +3 Query: 3135 PIRLINQSG--------HPQPKVPLMSPCKMSYMK-----VLRRVMLPLPNRHVPVPRPV 3275 P+R + + G HP + L++PC + + +L + +LPL + H+P P P+ Sbjct: 48 PVRRLPRQGRCHRALPYHPSAQPDLLAPCPLYLLSDREHHLLLQPLLPLFSLHLPHPLPL 107 Query: 3276 FASLRWRPGWLLTAPL 3323 W+P + PL Sbjct: 108 SPLSGWQPSFHHHCPL 123 >ref|NP_612903.1|hypothetical protein Length = 229 Score = 33.1 bits (74), Expect = 0.24 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 13/76 (17%) Frame = +3 Query: 3135 PIRLINQSG--------HPQPKVPLMSPCKMSYMK-----VLRRVMLPLPNRHVPVPRPV 3275 P+R + + G HP + L++PC + + +L + +LPL + H+P P P+ Sbjct: 48 PVRRLPRQGRCHRALPYHPSAQPDLLAPCPLYLLSDREHHLLLQPLLPLFSLHLPHPLPL 107 Query: 3276 FASLRWRPGWLLTAPL 3323 W+P + PL Sbjct: 108 SPLSGWQPSFHHHCPL 123 >ref|NP_859103.1|hypothetical protein Length = 196 Score = 33.1 bits (74), Expect = 0.24 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 13/76 (17%) Frame = +3 Query: 3135 PIRLINQSG--------HPQPKVPLMSPCKMSYMK-----VLRRVMLPLPNRHVPVPRPV 3275 P+R + + G HP + L++PC + + +L + +LPL + H+P P P+ Sbjct: 48 PVRRLPRQGRCHRALPYHPSAQPDLLAPCPLYLLSDREHHLLLQPLLPLFSLHLPHPLPL 107 Query: 3276 FASLRWRPGWLLTAPL 3323 W+P + PL Sbjct: 108 SPLSGWQPSFHHHCPL 123 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,696,796 Number of Sequences: 14420 Number of extensions: 368851 Number of successful extensions: 1067 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 973 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1066 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1965973035 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig833 (4775 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_024842.1|Pas56 35 0.097 >ref|YP_024842.1|Pas56 Length = 211 Score = 34.7 bits (78), Expect = 0.097 Identities = 17/34 (50%), Positives = 19/34 (55%) Frame = -3 Query: 2568 LDWSRRRG*SPKPVPPTPGSKYDREHSPTWPGSP 2467 LDW R G +P PVP P DREH + PG P Sbjct: 24 LDWMARYGAAPPPVPDDPDPAVDREHYAS-PGVP 56 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,707,178 Number of Sequences: 14420 Number of extensions: 553735 Number of successful extensions: 1674 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1409 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1659 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2351994351 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig834 (4290 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,617,158 Number of Sequences: 14420 Number of extensions: 519096 Number of successful extensions: 1343 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1190 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1343 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2096445669 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig835 (4315 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,957,913 Number of Sequences: 14420 Number of extensions: 493012 Number of successful extensions: 1453 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1286 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1451 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2109065357 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig836 (3674 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,789,114 Number of Sequences: 14420 Number of extensions: 426168 Number of successful extensions: 1177 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1063 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1177 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1808694926 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig837 (4242 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_852601.1|endopeptidase 35 0.050 >ref|NP_852601.1|endopeptidase Length = 503 Score = 35.4 bits (80), Expect = 0.050 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Frame = -2 Query: 2831 PIITTSSHGDEKTMEFKDYYAILGLSPDADEQAI--KQAYRKLARQYHPDVNPGDKKAEE 2658 P+I H K +EFK A +G + D DE A+ ++AYR L RQ + +KA++ Sbjct: 226 PLINKYPHPKIKVVEFKHIKAAIGENAD-DEDAVPLEEAYR-LLRQAAKGMFT-IQKADQ 282 Query: 2657 RFKEINEAYQALSDPERRRKYDELRSYY 2574 N +Q LS E + Y L+S Y Sbjct: 283 PKATYNVKFQELSQTEEYKDYKHLQSVY 310 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,473,332 Number of Sequences: 14420 Number of extensions: 452983 Number of successful extensions: 1401 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1237 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1400 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 2091731634 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig838 (3486 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_024927.1|gp07 33 0.16 >ref|YP_024927.1|gp07 Length = 257 Score = 33.5 bits (75), Expect = 0.16 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 5/104 (4%) Frame = -2 Query: 806 STAAPELPGNAAPAQSLR*GATQSHAG*THRSTDR*A--IAVVRLPVCLPDSEGTHSAID 633 ++A E G AA GAT AG ST A A P P + GTH + Sbjct: 16 ASATGEPAGGAAAT-----GATTPPAGTPAASTTTQADGAAPAAAPAAAPAAAGTHDSAP 70 Query: 632 TPVRAVADA-VRGATDHAGFQ--AESQPAVTVSAASQAVPARAD 510 T ++++ADA +R + GF+ ++ A+ A A PA+A+ Sbjct: 71 TWLQSIADADLRQFVEAKGFKDAGDAVKAIRELEAKHAAPAKAE 114 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,215,065 Number of Sequences: 14420 Number of extensions: 388204 Number of successful extensions: 1201 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1090 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1197 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1707497963 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig839 (2704 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,177,020 Number of Sequences: 14420 Number of extensions: 296561 Number of successful extensions: 620 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 536 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 620 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1314653364 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig840 (6055 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_006908.1|Hypothetical protein 39 0.005 >ref|YP_006908.1|Hypothetical protein Length = 315 Score = 39.3 bits (90), Expect = 0.005 Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 11/217 (5%) Frame = -2 Query: 2562 GLLRLFGFYTIVQEGTCHVYTLFGSVVGVLREPGLVILPFHLGVNAFLISFFGRRYVIDM 2383 GL+ F YTIV +GT T G V +P V+ FHL VN F I + Sbjct: 33 GLILAFNSYTIVSDGTVKTQTFLGKV-----DPNPVLPGFHL-VNPFASFDTFSTKDIAV 86 Query: 2382 RLDQRYLRSQPVNSEEGAPMGIGVWYEMSISDPVAYLFKNADPQGSLAANVSNAVVRTL- 2206 +LD+ + SQ + + + + V + S +L V+ ++ T+ Sbjct: 87 KLDKLQVPSQ---DKFKSTVDLTVMLQFDGSKAPINRINAGTQDQALDKYVTEKLLSTIR 143 Query: 2205 ---SNMPLAQMLENRHAMSQ---AVRAEVSPKASEWGYRLGSVYIRKVH----FRDQTMI 2056 ++P AQ L + +Q A++ EV A +GY + V+++ + +Q Sbjct: 144 EFGKSVPKAQDLFDAKIQAQLQTAIQQEVEEYARPYGYTVKQVFLQDITLPPVIMEQVQN 203 Query: 2055 RQIEAKVVNRLRQVTSAILQDGANRVNIITSTAERKA 1945 ++ + VN + + + Q+ +V + A+R+A Sbjct: 204 TKVREEQVNAAKAELARVEQEAQQKVK--QAEADREA 238 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,136,616 Number of Sequences: 14420 Number of extensions: 658812 Number of successful extensions: 2094 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1488 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2088 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2965609215 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig841 (3658 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,887,832 Number of Sequences: 14420 Number of extensions: 473955 Number of successful extensions: 1450 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1245 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1448 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1799057120 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig842 (2382 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164319.1|hypothetical protein 32 0.40 >ref|YP_164319.1|hypothetical protein Length = 116 Score = 31.6 bits (70), Expect = 0.40 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 6/48 (12%) Frame = -3 Query: 1258 RKSSLCRHACGRQPAGWLSFSPQTRRISQAV------MTPKARRNCWM 1133 R+ S R A G P W S P+ R S A MTP R CW+ Sbjct: 65 RQPSAMRRATGSAPGCWWSIRPRQRIASPAPFVSCTSMTPWCRMGCWI 112 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,770,457 Number of Sequences: 14420 Number of extensions: 317225 Number of successful extensions: 876 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 814 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 876 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1151393578 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig843 (4710 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,300,342 Number of Sequences: 14420 Number of extensions: 646630 Number of successful extensions: 1474 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1472 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2317290209 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig844 (3748 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_064745.1|gp7 35 0.075 >ref|NP_064745.1|gp7 Length = 540 Score = 34.7 bits (78), Expect = 0.075 Identities = 20/52 (38%), Positives = 28/52 (53%) Frame = -2 Query: 1920 VSPPNPCSQPVAPKVEGRSAGGSASTPPNHSAAEPVSASGSATSACNSASQS 1765 VS N + SA GSAST ++A VSA+ +ATSA N+A+ + Sbjct: 159 VSEGNAATSETNAANSATSASGSASTATTQASAASVSATNAATSASNAATSA 210 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,855,735 Number of Sequences: 14420 Number of extensions: 358789 Number of successful extensions: 1184 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 950 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1178 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1829071269 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig845 (3480 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,889,788 Number of Sequences: 14420 Number of extensions: 410083 Number of successful extensions: 1226 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1060 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1226 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1704285361 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig846 (4315 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,097,836 Number of Sequences: 14420 Number of extensions: 499542 Number of successful extensions: 1339 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1196 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1339 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2109065357 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig847 (3428 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_943986.1|hypothetical protein 34 0.12 >ref|NP_943986.1|hypothetical protein Length = 186 Score = 33.9 bits (76), Expect = 0.12 Identities = 15/33 (45%), Positives = 21/33 (63%) Frame = +2 Query: 2432 LPANRLRRFTGGQPIDSQQAERNCRFQAGRMGH 2530 + A R ++FTG +P+ NCR QAG+MGH Sbjct: 7 MDAKRFKKFTGRKPMQDDLERVNCR-QAGKMGH 38 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,453,341 Number of Sequences: 14420 Number of extensions: 409680 Number of successful extensions: 1323 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1183 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1319 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1676978244 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig848 (5498 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_445672.1|putative helicase 35 0.085 ref|YP_024695.1|gp22 35 0.11 >ref|NP_445672.1|putative helicase Length = 601 Score = 35.0 bits (79), Expect = 0.085 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 6/98 (6%) Frame = -1 Query: 2756 LTSLLVAERIVLLYSPSGAGKSSLIQAALIPALE--ARQFRVLPIVRVGLALPDD----I 2595 L S L++++ +L+ +P+G GKS L A++ A+E +R +P+ + L L DD + Sbjct: 16 LQSFLMSDKNLLITAPTGTGKSFL---AMLMAMETKSRVVYTVPLRALALQLNDDFHNKV 72 Query: 2594 PPGVNRYLAAAALSIGGDEAIDRSLADLIVPSDQSEMD 2481 P VN Y + AL+ E +L + ++ + + D Sbjct: 73 APLVNGYADSVALTSEVYEEDPENLEERVIFTTYEKAD 110 >ref|YP_024695.1|gp22 Length = 203 Score = 34.7 bits (78), Expect = 0.11 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Frame = -1 Query: 1322 LSLLLARQAVLIQREREEPVDLGAMAMLYRALATSRVRATFDLGAPVTALA--VSQNERW 1149 + +L+A L+ + A A+ YRA T RA + + APV++ A + Q RW Sbjct: 1 MRVLIAFVVALLGAAAPVAAQVPAEALAYRAELTRNARAVWGMDAPVSSFAAQIHQESRW 60 Query: 1148 WAAAVS 1131 A AVS Sbjct: 61 RADAVS 66 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,553,740 Number of Sequences: 14420 Number of extensions: 650943 Number of successful extensions: 1953 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1639 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1952 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2705623971 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig849 (3198 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,637,879 Number of Sequences: 14420 Number of extensions: 390229 Number of successful extensions: 1002 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 924 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1001 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1568857928 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig850 (5372 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817363.1|gp25 41 0.001 ref|NP_817477.1|gp27 37 0.017 ref|NP_891650.1|distal long tail fiber assembly catalyst 34 0.19 >ref|NP_817363.1|gp25 Length = 320 Score = 41.2 bits (95), Expect = 0.001 Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 7/168 (4%) Frame = -2 Query: 4471 GGGGNSGAPYTNDFVEIFNRGTT---TVSLSGLSIQYASATG----TGNFGSNPIVLLSG 4313 GGGG GA FV + + G+T T L G ++ A+G GN G + Sbjct: 91 GGGGGGGAKVFRTFVPVASMGSTYSVTRGLGGAAVTDTGASGPNGKPGNAGG------AS 144 Query: 4312 SLAPGQYYLVQLSGGATGSPLPTPDATGSINASASAGKFALVNSTSGLACNGGSTPCSPA 4133 + + G L+ GG G T + GS G A V+ S NG + Sbjct: 145 TFSSGSIQLIANGGGGGGGGTSTSGSPGS-------GGTAFVSGISSTTANGSA------ 191 Query: 4132 QLALIIDLVGYGSANFFEGAPAPTLSNTTAALRNTNGCVDTDNNASDF 3989 G A + A AP + NT+ G +D + F Sbjct: 192 -----------GGAGDYNAAGAPGVDNTSGGAAGGGGGSGSDQSTIYF 228 >ref|NP_817477.1|gp27 Length = 946 Score = 37.4 bits (85), Expect = 0.017 Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 11/123 (8%) Frame = -2 Query: 4474 YGGGGNSGAPYTND-FVEIFNRGTTTVSL-----SGLSIQYASATGTGNFGSNPIVLLSG 4313 YGGGG G Y N FV + G+T SG + S G G V SG Sbjct: 756 YGGGGGGGGAYVNRIFVPVELMGSTYSVTRGSGGSGGAKVLTSGDGRGGANGGASVFSSG 815 Query: 4312 SLAPGQYYLVQLSGGATGSPLPTPDATGSINASASAGKFALVNSTSGLAC-----NGGST 4148 S+ ++ +GG GS ++G+ +A + T+ L NGGS+ Sbjct: 816 SV------VITANGGGHGSGGTNSSSSGTRGLGGTATAVGITGVTASLLSGANGGNGGSS 869 Query: 4147 PCS 4139 P S Sbjct: 870 PTS 872 >ref|NP_891650.1|distal long tail fiber assembly catalyst Length = 258 Score = 33.9 bits (76), Expect = 0.19 Identities = 39/142 (27%), Positives = 54/142 (38%), Gaps = 11/142 (7%) Frame = -2 Query: 3316 NPDPILFGRGGNPLSAANTLRGGDSVTGLVGV---MTYTWA---GNAASGNAYRVRPVGD 3155 N ++GRGGN S A GG+++ +G +T A G G R R V Sbjct: 107 NSGVTVYGRGGNGGSNAAGAAGGNAINNAIGTRLRITNNGAIAGGGGGGGGGNRGRLV-- 164 Query: 3154 LSDLTPGGGVPVFVAENPRPTTPPAVGGSITV-----VGMNLLNYFNTFSGCTNGLTGGP 2990 GGG P + A GSI+ VG L+ + +G G GG Sbjct: 165 ---FGGGGGRPFGAGGSSSNMGSGATAGSISAPGKGSVGEGSLSAYTGGAGGNVGAAGGR 221 Query: 2989 TDCRGAENATEFTRQTAKTVAT 2924 + +G N TE+ A T Sbjct: 222 CNTQG--NGTEYNGGAAGKAVT 241 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,395,246 Number of Sequences: 14420 Number of extensions: 628097 Number of successful extensions: 2030 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 1670 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2027 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2639976249 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig851 (3960 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818258.1|gp207 35 0.080 ref|YP_024800.1|Pas14 35 0.080 ref|NP_680513.1|NTP-binding protein 33 0.30 ref|YP_025055.1|putative NTP-binding protein 33 0.30 ref|NP_958295.1|hypothetical protein 32 0.40 >ref|NP_818258.1|gp207 Length = 289 Score = 34.7 bits (78), Expect = 0.080 Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 16/115 (13%) Frame = +3 Query: 810 RYETHHGVRITDGALIAAAMLSDRYISDRFLPDKAIDLIDEAAARLRMEITSDPQELDDL 989 RY T HGV IT + A + L + + D P ++++ Sbjct: 187 RYITEHGVEITPAQVKAVSFLRNPWYQD-------------------------PAQVEER 221 Query: 990 KRRIMQLEIERE---------------ALRKEKD-QASKERLEKLEQELANLREQ 1106 KRR Q + ERE A RK K Q + +RL+++E E+ LREQ Sbjct: 222 KRRKEQRKREREQFANETPEQRKARHLAARKLKSRQLAAQRLKEIEDEIRQLREQ 276 >ref|YP_024800.1|Pas14 Length = 570 Score = 34.7 bits (78), Expect = 0.080 Identities = 26/102 (25%), Positives = 41/102 (40%) Frame = +1 Query: 3199 AAIKKPRAKKPMIAAGSHGVSIKSIAGVAPRRSRAAPRCKPIRRTTGAPTSAPIPAPSED 3378 A+++ ++ AA + + AG+AP +P T APT AP P P+ D Sbjct: 53 ASVQGETTRRTDEAAQATAARAELAAGLAP---------EPTPEPTPAPTPAPEPVPAPD 103 Query: 3379 RASARPTPASLSPN*SRKKRFWKGRIAPPPIPSSRDGTANQT 3504 P PA++ G + P P P + A+ T Sbjct: 104 PTGTPPVPAAVPAG---------GTLDPAPEPEAAPAYASMT 136 >ref|NP_680513.1|NTP-binding protein Length = 240 Score = 32.7 bits (73), Expect = 0.30 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Frame = +3 Query: 336 RTKNNPVLI-GEPGVGKTAIVEGLAQRIVRGDVPEALKNKRVXXXXXXXXXXXXKYRGEF 512 RTKN VLI G+PGVGKT+ + L + + D+ ++ K K E+ Sbjct: 12 RTKNWRVLIYGKPGVGKTSAIRNLNGKTLVLDLDDSSKVLSGAPNIDVQPFDRSKPSEEW 71 Query: 513 EERLKAVLKEIQERDDIIL 569 +E LK + + + D++++ Sbjct: 72 KEFLKNLAERVSGYDNLVI 90 >ref|YP_025055.1|putative NTP-binding protein Length = 235 Score = 32.7 bits (73), Expect = 0.30 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Frame = +3 Query: 336 RTKNNPVLI-GEPGVGKTAIVEGLAQRIVRGDVPEALKNKRVXXXXXXXXXXXXKYRGEF 512 RTKN VLI G+PGVGKT+ + L + + D+ ++ K K E+ Sbjct: 12 RTKNWRVLIYGKPGVGKTSAIRNLDGKTLVLDLDDSSKVLSGAPNIDVQPFDRSKPSEEW 71 Query: 513 EERLKAVLKEIQERDDIIL 569 +E LK + + + D++++ Sbjct: 72 KEFLKNLAERVSGYDNLVI 90 >ref|NP_958295.1|hypothetical protein Length = 215 Score = 32.3 bits (72), Expect = 0.40 Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 12/106 (11%) Frame = -1 Query: 951 CADGPLLH---------RSGQ*LCRAGTDPRCSDPRALPPRSAHRQ*CAHRDGSRSA--- 808 C+DGP R + C AGT CS A+P R+A R A G R A Sbjct: 32 CSDGPAPRSTRPPSPPCRPSRPPCTAGTPTACSAGPAVPMRAARR--LARLVGRRGAFLL 89 Query: 807 LSDHARSRWCLQPTVDQPSPVGSVVQARHLSRCVSDTHRAWLRQPC 670 ++ ++ W + VD PS G + L+ S H +WL C Sbjct: 90 IAGFGKTCWGVSFLVDPPSADG----LQLLTAVCSLRHWSWLWIVC 131 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,509,916 Number of Sequences: 14420 Number of extensions: 400817 Number of successful extensions: 1572 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 1364 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1569 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1942094820 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig852 (2965 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_665958.1|putative glutaminase 41 8e-04 ref|NP_777335.1|coat protein 33 0.23 >ref|NP_665958.1|putative glutaminase Length = 191 Score = 40.8 bits (94), Expect = 8e-04 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Frame = -3 Query: 1337 QHRGQESAGIAVSNGRNIRYYKNMGLVAQVFDEEKLRPLSGYMAIGHTRYSTTGSSKLEN 1158 Q G S G+AV+ + ++ G+ A D P + +A+GHTR++T G L N Sbjct: 25 QRSGGHSWGVAVAVDGEL--HRERGVGAMPIDAVDALPEAD-VALGHTRFATRGEISLRN 81 Query: 1157 AQPFVVESALG-PLA-VGHNGNLTNA 1086 A PF V G P+A + HNG +A Sbjct: 82 AHPFEVRDRDGEPVAMLAHNGTWLSA 107 >ref|NP_777335.1|coat protein Length = 217 Score = 32.7 bits (73), Expect = 0.23 Identities = 21/66 (31%), Positives = 32/66 (48%) Frame = -2 Query: 1848 NPASQRTAVCRRVPLVKPNQMPAIAAPIARLIQTMMIRPPLSTPNSPTPISTRRKNPLMP 1669 +P QR P+V P+ P + P ++ I T PP ++P P PI+T P P Sbjct: 27 DPNRQRVPYAPAQPVVPPSSQPVLP-PSSQPISTPT--PPQTSPTLPNPIATPTPTP-TP 82 Query: 1668 SPRVTT 1651 +P+ T Sbjct: 83 TPQTPT 88 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,035,588 Number of Sequences: 14420 Number of extensions: 340280 Number of successful extensions: 1050 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 953 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1049 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1442441690 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig853 (3423 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase 53 2e-07 ref|YP_077256.1|group I glycosyltransferase 49 5e-06 ref|NP_835600.1|putative glycosyltransferases 37 0.011 >ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase Length = 320 Score = 53.1 bits (126), Expect = 2e-07 Identities = 74/299 (24%), Positives = 126/299 (42%), Gaps = 14/299 (4%) Frame = +2 Query: 194 LVTGAAGFIGSHLVDRLLARGEQVIGFDNFVDYYSPDRKRRNLAQAMQQPGFTLIEGDIR 373 L+TG GFIGS L+ RL D V + D N+ + + F D+ Sbjct: 3 LITGCTGFIGSQLLKRL--------NNDKVVCVANKDHFSNNIVDSAAEYVFV----DLT 50 Query: 374 DPDTVAHIFTRYRPRFVAHLAAMPGPRPSIANPQLYEAVNVGGSLVILDYARRSEVENLV 553 D + V + + +P V +LA+ R S YE + + +I +E L+ Sbjct: 51 DREKVRDLLRKVKPDLVINLASKTPVRLS------YEDTSFMNNAIIAYNIAMAEAP-LI 103 Query: 554 LASTSSVYGKTNRVPFREDDNTDR-PLSPYAATKKAAEVLAYTFHSLYGIPTSVVRFFTV 730 AST+ VY T + +++ R P SPYA +K A+E+L T ++R Sbjct: 104 HASTAEVYPYTPYPHYYKEEEVYRTPTSPYAVSKIASEMLLAGRKE----KTIILRPINT 159 Query: 731 YG-PRGR-PDMTPYLFVER----MVRGQPITLFNGGENLFRDYTYIDDIVSGVINALDRP 892 G P R P+ F E+ M+ G ++G R + Y +D V+ ++A+ Sbjct: 160 IGRPISRLPEEARGYFFEKTVLAMLSGAKEIHYDGHPLSSRQWMYWEDHVNAYLHAIKNL 219 Query: 893 HPYE-IFNLG-----HSQPVELRRFVNLLEQITGYPAQIEIKPLP-ATEPPITYADTTK 1048 E ++N+ ++ + L V+++ + G+ +I P EP D+TK Sbjct: 220 DKMEGVYNVSVHYSVYNHVLTLSETVSIVAKELGWEGKISWMENPRPVEPNYLLLDSTK 278 >ref|YP_077256.1|group I glycosyltransferase Length = 329 Score = 48.5 bits (114), Expect = 5e-06 Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 5/175 (2%) Frame = +2 Query: 2726 RSLQRANLIIVDSKATAGDLGRLY---GIPRQRVRLLYPAVDERFRPLTGDAVVRVRERL 2896 R L A +IV + T +L + G+ +R++Y +AV +VRE Sbjct: 116 RHLPEAAYVIVPTYHTLSELEQYADKKGLDLPPIRVIYHGNYLNVAYTREEAVQKVREMY 175 Query: 2897 HLPA--RFLLFVGTLEPRKNLVRLLQAFALLQNEYPDLHLLLAGRKGWLYDDIFAAVEQY 3070 +P + +L V PRK+L RL + L ++Y +L+ G KG +Y D Sbjct: 176 GIPPNKKIILNVTNYHPRKDLPRLRRIREKLGDDY---YLITVG-KGNIYGD-------- 223 Query: 3071 HLSERVHFLDFVADEDLPALYNLAEAFVYPSLYEGYGFPVLEALACGTPVVTTKV 3235 + ++D +L LY ++ ++ S EG+ P++EA A G P V T + Sbjct: 224 ------KSIGTISDTELSLLYAGSDVYLSASQDEGFELPLVEAAAHGLPAVVTDI 272 >ref|NP_835600.1|putative glycosyltransferases Length = 484 Score = 37.4 bits (85), Expect = 0.011 Identities = 18/44 (40%), Positives = 24/44 (54%) Frame = +2 Query: 3113 EDLPALYNLAEAFVYPSLYEGYGFPVLEALACGTPVVTTKVSSL 3244 E++ LYN A+ + S EG+G LEA CG PVV T + Sbjct: 294 EEIALLYNGADVVLQLSSNEGFGIASLEASLCGAPVVATMTGGI 337 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,937,500 Number of Sequences: 14420 Number of extensions: 412133 Number of successful extensions: 1230 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 1113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1230 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1673765642 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig854 (4544 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_795404.1|head maturation protease 55 9e-08 ref|NP_795465.1|putative ClpP protease ATP-dependent protease pr... 49 6e-06 ref|NP_817552.1|gp103 49 6e-06 ref|NP_061501.1|ClpP protease 45 7e-05 ref|NP_858955.1|protease of the ClpP family 43 3e-04 ref|NP_050150.1|ClpP-like protease 41 0.001 ref|NP_038326.1|ORF25 40 0.002 ref|NP_049395.1|putative scaffolding protein 38 0.008 ref|NP_075503.1|protease 38 0.008 ref|NP_803338.1|scaffolding protease 38 0.008 ref|NP_835555.1|hypothetical protein, similar to scaffolding pro... 38 0.011 ref|NP_839925.1|putative ClpP protease 38 0.011 ref|NP_076678.1|protease 38 0.011 ref|NP_958605.1|77ORF015 35 0.092 ref|NP_817947.1|gp96 34 0.12 ref|NP_049970.1|Predicted clp-protease 34 0.16 ref|NP_899255.1|ClpP 34 0.16 >ref|NP_795404.1|head maturation protease Length = 268 Score = 54.7 bits (130), Expect = 9e-08 Identities = 43/144 (29%), Positives = 67/144 (46%) Frame = +1 Query: 304 FLESEDPDRDIWLYINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAK 483 FL+S + DI + +NS GG V G IY + +V V G+A S+A+ I+ G Sbjct: 35 FLDSAGGE-DIQVRLNSGGGEVFVGSEIYSALKDYPGNVEVVITGLAASIASIIMLAGDV 93 Query: 484 GKRYSLPHSTIHMHPAGGGARGYAPDVEIMAXXXXXXXXXXXXXXAKDTGQPIERIAKDF 663 K + P + I +H A G+ G ++ + A+ TG+ I + Sbjct: 94 IK--ASPMAQIMIHNASWGSYGDYRQLKHDSEVVENASISLAGMYAQKTGKQETEIRELL 151 Query: 664 DRDLFMTPEQAKEYGIIDEILTRE 735 D + + T AKE G+ID+IL E Sbjct: 152 DAETWFTANSAKEIGLIDDILYNE 175 >ref|NP_795465.1|putative ClpP protease ATP-dependent protease proteolytic subunit Length = 221 Score = 48.5 bits (114), Expect = 6e-06 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 1/153 (0%) Frame = +1 Query: 286 IVAQLLFLESEDPDRDIWLYINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPI 465 + A+ + + + + DI L +NS GG VT G IY + + + V GMA S A+ Sbjct: 28 VSAKSIIEKLPEDNSDIVLEVNSNGGLVTVGSEIYTALRNYKGKVTAEITGMAASAASVA 87 Query: 466 LAGGAKGKRYSLPHSTIHMHPA-GGGARGYAPDVEIMAXXXXXXXXXXXXXXAKDTGQPI 642 + G K P + + +H A G + D++ + TG+ Sbjct: 88 VMGA--DKVVMSPTAQMMVHKALFNWVAGNSDDLDKASNALKSSDKAIVNAYVAKTGKSE 145 Query: 643 ERIAKDFDRDLFMTPEQAKEYGIIDEILTREDV 741 + I + FM+ ++A E G DE++T E V Sbjct: 146 DEIMDLMRNETFMSAQEAVENGFADEVMTFEAV 178 >ref|NP_817552.1|gp103 Length = 286 Score = 48.5 bits (114), Expect = 6e-06 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 18/172 (10%) Frame = +1 Query: 262 IDDQIANLIVAQLLFLESEDPDRDIWLYINSPGGSVTAGLGIYDTM--HHIRP------- 414 ++D + QL EDP+ D+ + +NSPGGSV AG+ ++D + + RP Sbjct: 118 VNDYSVEACLNQLALWHREDPNCDMHIVMNSPGGSVIAGMHLFDQIAAYSTRPWDTSDRP 177 Query: 415 ---DVATVCV-GMAGSMATPILAGGAKGKRYSLPHSTIHMHPAGGGARGYAPDVEIMAXX 582 T+ V GMA SM +L + +R P + + +H G G ++E M Sbjct: 178 KGTHKTTMTVRGMAASMGGILLQ--SVDERIIGPEAYLMIHEISAGTGGKIGEIEDMVGW 235 Query: 583 XXXXXXXXXXXXAKDTGQPIERIAKDFD-----RDLFMTPEQAKEYGIIDEI 723 G I A++FD D ++ ++A YG +D I Sbjct: 236 YRHLCARIAKVFVHRAGGKI--TAEEFDAGWKRTDWWLDSDEALRYGFVDRI 285 >ref|NP_061501.1|ClpP protease Length = 296 Score = 45.1 bits (105), Expect = 7e-05 Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 3/148 (2%) Frame = +1 Query: 307 LESEDPDRDIWLYINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAK- 483 L S D D+ + INSPGG V GL IY+ + + V +G+A S A+ I G + Sbjct: 71 LRSIGNDVDVTVNINSPGGDVFEGLAIYNLLREHKGKVTVNIIGLAASAASFIAMAGDEI 130 Query: 484 --GKRYSLPHSTIHMHPAGGGARGYAPDVEIMAXXXXXXXXXXXXXXAKDTGQPIERIAK 657 G+ + + +H A A G D+ +A A+ T I+ I K Sbjct: 131 RIGRA-----AFLMIHNAWLIAMGNRNDLREIADWLEPFDMTLADIYAQRTEIDIDDIVK 185 Query: 658 DFDRDLFMTPEQAKEYGIIDEILTREDV 741 D + ++ +A + G D L +++ Sbjct: 186 QMDAETWIGGREAVDKGWADAFLESDEI 213 >ref|NP_858955.1|protease of the ClpP family Length = 245 Score = 43.1 bits (100), Expect = 3e-04 Identities = 33/133 (24%), Positives = 59/133 (44%) Frame = +1 Query: 331 DIWLYINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAKGKRYSLPHS 510 DI + I+SPGG + AGL IY+ + + V +G A S A+ I G + + P + Sbjct: 74 DITVNIDSPGGDMFAGLAIYNLLLAHKGRVTVNVIGRAASAASVIAMAGDQINMH--PSA 131 Query: 511 TIHMHPAGGGARGYAPDVEIMAXXXXXXXXXXXXXXAKDTGQPIERIAKDFDRDLFMTPE 690 I +H G + ++ ++ TG + I + D + +M+ E Sbjct: 132 FIMIHNCHLVVGGNSKELAEVSEMMKPFDSAMADIYVARTGMSKDTIVQMMDAETWMSAE 191 Query: 691 QAKEYGIIDEILT 729 ++ + G D I+T Sbjct: 192 ESVKLGFADSIVT 204 >ref|NP_050150.1|ClpP-like protease Length = 242 Score = 40.8 bits (94), Expect = 0.001 Identities = 35/138 (25%), Positives = 57/138 (41%) Frame = +1 Query: 331 DIWLYINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAKGKRYSLPHS 510 D+ L INSPGG V AG IY + + V G A S A+ I A + P + Sbjct: 46 DVTLEINSPGGYVDAGSEIYTALKEYQGQVIAKITGQACSAASWIAL--AADRIEMSPTA 103 Query: 511 TIHMHPAGGGARGYAPDVEIMAXXXXXXXXXXXXXXAKDTGQPIERIAKDFDRDLFMTPE 690 + +H A + G + D+ ++ TG + + + +M + Sbjct: 104 QMMIHRASTISIGNSDDLASDLNALNSLDKSFVDLYSQRTGLDAQEVYRLMCNTTWMNAK 163 Query: 691 QAKEYGIIDEILTREDVK 744 +A + G DEI+ + D K Sbjct: 164 EAVDKGFADEIMFQNDKK 181 >ref|NP_038326.1|ORF25 Length = 221 Score = 40.0 bits (92), Expect = 0.002 Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 3/171 (1%) Frame = +1 Query: 319 DPDRDIWLYINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAKGKRYS 498 D D +I L I S GG V A IY + + G+A S A+ I G + Sbjct: 39 DKDEEITLNIASNGGDVFAASEIYTMLKASGKRIVVNVQGLAASAASVISMAGDTVR--I 96 Query: 499 LPHSTIHMHPAGGGARGYAPDVEIMAXXXXXXXXXXXXXXAKDTGQPIERIAKDFDRDLF 678 P + I +H A G RG + D+E + TG + ++ + Sbjct: 97 SPTAQIMIHKASTGIRGNSDDLEHQSAVLSSIDESIALAYEMKTGLKQTELLDLMAKETW 156 Query: 679 MTPEQAKEYGIIDEIL---TREDVKK**RPGGSMNSAHPLVWRNPMSRTRN 822 + + A + G DEI+ T E+V N+ H L ++ +++ +N Sbjct: 157 LNAKTAVDKGFADEIMFSDTEEEVM-------VTNAVHQLPNKSAITKFKN 200 >ref|NP_049395.1|putative scaffolding protein Length = 222 Score = 38.1 bits (87), Expect = 0.008 Identities = 35/138 (25%), Positives = 55/138 (39%) Frame = +1 Query: 313 SEDPDRDIWLYINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAKGKR 492 + D D +I L I S GG V A IY + + G+A S A+ I G R Sbjct: 37 TNDEDEEITLNIASNGGDVFAASEIYTMLRDSGKRIVVNIQGLAASAASVISMAG-NTVR 95 Query: 493 YSLPHSTIHMHPAGGGARGYAPDVEIMAXXXXXXXXXXXXXXAKDTGQPIERIAKDFDRD 672 S P + I +H A G G + D+E + TG + + ++ Sbjct: 96 IS-PTAHIMIHKASSGFVGNSDDMEHQSVVLNSIDESIALAYEMKTGLKQSELLELMAKE 154 Query: 673 LFMTPEQAKEYGIIDEIL 726 ++ + A + G DEI+ Sbjct: 155 TWLNAKTAVDKGFADEIM 172 >ref|NP_075503.1|protease Length = 257 Score = 38.1 bits (87), Expect = 0.008 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 3/140 (2%) Frame = +1 Query: 331 DIWLYINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAKGKRYSLPHS 510 +I ++INS GGSV G IY+ + + +A S+A+ I G + +S Sbjct: 53 EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSG--DTIFMHKNS 110 Query: 511 TIHMHPAGGGARGYAPDVEIMAXXXXXXXXXXXXXX---AKDTGQPIERIAKDFDRDLFM 681 + +H + G A ++ A AKD Q E + + D + ++ Sbjct: 111 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQ--EHLKQMLDAETWL 168 Query: 682 TPEQAKEYGIIDEILTREDV 741 T E+A +G+IDEIL ++ Sbjct: 169 TAEEALSFGLIDEILGANEI 188 >ref|NP_803338.1|scaffolding protease Length = 257 Score = 38.1 bits (87), Expect = 0.008 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 3/140 (2%) Frame = +1 Query: 331 DIWLYINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAKGKRYSLPHS 510 +I ++INS GGSV G IY+ + + +A S+A+ I G + +S Sbjct: 53 EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSG--DTIFMHKNS 110 Query: 511 TIHMHPAGGGARGYAPDVEIMAXXXXXXXXXXXXXX---AKDTGQPIERIAKDFDRDLFM 681 + +H + G A ++ A AKD Q E + + D + ++ Sbjct: 111 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQ--EHLKQMLDAETWL 168 Query: 682 TPEQAKEYGIIDEILTREDV 741 T E+A +G+IDEIL ++ Sbjct: 169 TAEEALSFGLIDEILGANEI 188 >ref|NP_835555.1|hypothetical protein, similar to scaffolding protein Length = 245 Score = 37.7 bits (86), Expect = 0.011 Identities = 33/141 (23%), Positives = 57/141 (40%) Frame = +1 Query: 316 EDPDRDIWLYINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAKGKRY 495 E D D+ + INS GG++ AG IY + + V +A S A+ I G + Sbjct: 36 EFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIAMAGDHIE-- 93 Query: 496 SLPHSTIHMHPAGGGARGYAPDVEIMAXXXXXXXXXXXXXXAKDTGQPIERIAKDFDRDL 675 P + + +H A+G A D+ A A G+ + + + R+ Sbjct: 94 MSPVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKNKQELVEMMARET 153 Query: 676 FMTPEQAKEYGIIDEILTRED 738 ++ ++A E G D + D Sbjct: 154 WLNADEAIEQGFADSKMFEND 174 >ref|NP_839925.1|putative ClpP protease Length = 235 Score = 37.7 bits (86), Expect = 0.011 Identities = 35/134 (26%), Positives = 51/134 (38%) Frame = +1 Query: 325 DRDIWLYINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAKGKRYSLP 504 D +I L I S GG V A IY + V G+A S A+ I G P Sbjct: 42 DEEIVLNIASNGGDVFAASEIYTAIKMNGKPVTVNIQGLAASAASVIAMAGDTVN--ISP 99 Query: 505 HSTIHMHPAGGGARGYAPDVEIMAXXXXXXXXXXXXXXAKDTGQPIERIAKDFDRDLFMT 684 + + +H A G++G A D E A TG + + + +MT Sbjct: 100 TAQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDLLQLMSNETWMT 159 Query: 685 PEQAKEYGIIDEIL 726 + A + G D I+ Sbjct: 160 AQDAVDKGFADNIM 173 >ref|NP_076678.1|protease Length = 235 Score = 37.7 bits (86), Expect = 0.011 Identities = 35/134 (26%), Positives = 51/134 (38%) Frame = +1 Query: 325 DRDIWLYINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAKGKRYSLP 504 D +I L I S GG V A IY + V G+A S A+ I G P Sbjct: 42 DEEIVLNIASNGGDVFAASEIYTAIKMNGKPVTVNIQGLAASAASVIAMAGDTVN--ISP 99 Query: 505 HSTIHMHPAGGGARGYAPDVEIMAXXXXXXXXXXXXXXAKDTGQPIERIAKDFDRDLFMT 684 + + +H A G++G A D E A TG + + + +MT Sbjct: 100 TAQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDLLQLMSNETWMT 159 Query: 685 PEQAKEYGIIDEIL 726 + A + G D I+ Sbjct: 160 AQDAVDKGFADNIM 173 >ref|NP_958605.1|77ORF015 Length = 245 Score = 34.7 bits (78), Expect = 0.092 Identities = 31/141 (21%), Positives = 56/141 (39%) Frame = +1 Query: 316 EDPDRDIWLYINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAKGKRY 495 E D D+ + INS GG++ AG IY + + V +A S A+ I G + Sbjct: 36 EFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIAMAGDHIE-- 93 Query: 496 SLPHSTIHMHPAGGGARGYAPDVEIMAXXXXXXXXXXXXXXAKDTGQPIERIAKDFDRDL 675 P + + +H A+G D+ A A G+ + + + ++ Sbjct: 94 MSPVARMMIHNPSSIAQGEVKDLNHAAETLEHVGQIMAEAYAVRAGKNKQELIEMMAKET 153 Query: 676 FMTPEQAKEYGIIDEILTRED 738 ++ ++A E G D + D Sbjct: 154 WLNADEAIEQGFADSKMFEND 174 >ref|NP_817947.1|gp96 Length = 566 Score = 34.3 bits (77), Expect = 0.12 Identities = 26/86 (30%), Positives = 42/86 (48%) Frame = +1 Query: 1129 ARIDDVEISKSNILLIGPTGSGKTLLAQTMARLLDVPFAIADATALTEAGYVGEDVENIL 1308 AR ++++ K +LIG +G GKTL Q + + P D AL + YVGE Sbjct: 305 ARAYNLKLPKG-AMLIGVSGCGKTLSCQALGAEWNWPVVRLDINAL-KGKYVGESESR-- 360 Query: 1309 LRLIQAADGDLERAQTGIIYIDEIDK 1386 ++ ++ I+YIDE++K Sbjct: 361 ---LRGIFSKIDALGQVIVYIDEVEK 383 >ref|NP_049970.1|Predicted clp-protease Length = 224 Score = 33.9 bits (76), Expect = 0.16 Identities = 32/138 (23%), Positives = 55/138 (39%) Frame = +1 Query: 313 SEDPDRDIWLYINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAKGKR 492 + D +I L I S GG V A IY + + G+A S A+ +++ A R Sbjct: 40 ANDEGEEITLNIASNGGDVFAASEIYTMLKSCGKRIVANVQGLAASAAS-VISMAADTVR 98 Query: 493 YSLPHSTIHMHPAGGGARGYAPDVEIMAXXXXXXXXXXXXXXAKDTGQPIERIAKDFDRD 672 S P + + +H A G G + D+E + TG + ++ Sbjct: 99 IS-PTAHMMIHKASSGLVGNSDDMEHQSVVLNSIDESIALAYEMKTGLKQTELLDLMAKE 157 Query: 673 LFMTPEQAKEYGIIDEIL 726 ++ + A + G DEI+ Sbjct: 158 TWLNAKTAVDKGFADEIM 175 >ref|NP_899255.1|ClpP Length = 239 Score = 33.9 bits (76), Expect = 0.16 Identities = 20/76 (26%), Positives = 32/76 (42%) Frame = +1 Query: 334 IWLYINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAKGKRYSLPHST 513 ++L++N+PGG+ A I D + + C A ++ G S P +T Sbjct: 48 VYLHLNTPGGNFAAACQICDAIMQSKAGAVIACAEGEVCSAGTMIFLACNGWHVS-PFAT 106 Query: 514 IHMHPAGGGARGYAPD 561 H + GG G PD Sbjct: 107 FMFHTSSGGQIGKMPD 122 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,868,801 Number of Sequences: 14420 Number of extensions: 543841 Number of successful extensions: 1690 Number of sequences better than 0.5: 17 Number of HSP's better than 0.5 without gapping: 1482 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1683 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2230529854 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig855 (5635 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,144,817 Number of Sequences: 14420 Number of extensions: 610393 Number of successful extensions: 1719 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1501 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1718 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2775960816 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig856 (4446 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,801,456 Number of Sequences: 14420 Number of extensions: 553223 Number of successful extensions: 1669 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1410 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1668 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2178473641 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig857 (3640 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,192,504 Number of Sequences: 14420 Number of extensions: 410907 Number of successful extensions: 1334 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1333 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1789419314 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig858 (4725 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_835600.1|putative glycosyltransferases 37 0.015 >ref|NP_835600.1|putative glycosyltransferases Length = 484 Score = 37.4 bits (85), Expect = 0.015 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Frame = -3 Query: 1951 RDHWTFL--------GTLDPREMAAFFPNLDVLVVPSLNSTETFGLVQVEAMLCGTPTVA 1796 R+H F+ G E+A + DV++ L+S E FG+ +EA LCG P VA Sbjct: 274 REHIVFISNDEVFHNGGFSREEIALLYNGADVVL--QLSSNEGFGIASLEASLCGAPVVA 331 Query: 1795 SNLPGV 1778 + G+ Sbjct: 332 TMTGGI 337 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,815,988 Number of Sequences: 14420 Number of extensions: 523774 Number of successful extensions: 1481 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1302 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1481 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2325177514 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig859 (5865 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,793,534 Number of Sequences: 14420 Number of extensions: 654957 Number of successful extensions: 1980 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1714 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1979 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2868046092 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig860 (4348 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817352.1|gp14 34 0.15 ref|NP_803712.1|ORF146 32 0.43 >ref|NP_817352.1|gp14 Length = 1188 Score = 33.9 bits (76), Expect = 0.15 Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 17/159 (10%) Frame = +3 Query: 12 FSCWRLGLCV-WLACCVVGFPLVSRLSRCPVRVPAFLLASFLSSAVRRVVTGIWGSPCLR 188 F+ W+ V WLA + G ++ + + A A+ +S+A+ R+ +W + + Sbjct: 419 FAAWKAIKGVEWLATSLGG---INTMLATTLPASAEKGAAGISAALSRIAVPLWLTTLIE 475 Query: 189 IRYVLLAVPLPDRGECVLFSPCVAVRP---RRLADLQY----------PPEPPAPTIGP- 326 +Y + GE LF V + P R D P PPAP++ P Sbjct: 476 DKYPNFPIQDQPDGEDRLFPGWVPLLPFWEDRFRDWFGSDPDTGLPIGPAGPPAPSMSPA 535 Query: 327 --NPTVPAGLAAGPQFVADFATADSLAAWQSVALDFVLP 437 +P GL GP A+ S AA S A D +LP Sbjct: 536 VDGILLPGGLGGGPGAQAERRGRSSSAASGSPAGDPILP 574 >ref|NP_803712.1|ORF146 Length = 1093 Score = 32.3 bits (72), Expect = 0.43 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 11/155 (7%) Frame = +2 Query: 1214 TALAFPTPYTLGNTSRTTLNAEYINSAIATSPVGDVLTLWIDQAAKVIRFRKRD------ 1375 TA+ PTP + +NA+Y+ IA + + + V+R + Sbjct: 814 TAIELPTP-AIDAVPSPVVNAQYVRKGIAGGKTEWATITFPEIPSDVVRDTAQATKPQGR 872 Query: 1376 VAGNWGPVTEVTRNVAFPVRPAMTVVNGGSQSGRIIAV-----WRDDFTGSDASIYYTFS 1540 VAGNW V P++ T++ G Q+G +AV G++ + Y Sbjct: 873 VAGNWVDVA--------PLQTDDTLM--GMQNGEWVAVPAAVIGEVPSEGANGTNYVREK 922 Query: 1541 DTGGASWAPVTRAFGVEAYRAVVQLASGTNGEVAL 1645 G+ W PVT +V A T+G++ L Sbjct: 923 TASGSKWTPVT---------IIVDQADATSGQLFL 948 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,453,762 Number of Sequences: 14420 Number of extensions: 557256 Number of successful extensions: 1899 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1513 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1889 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2126417428 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig861 (4038 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,349,472 Number of Sequences: 14420 Number of extensions: 450771 Number of successful extensions: 1233 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1127 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1233 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1983483726 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig862 (5464 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_040653.1|50-kDa virion protein 33 0.25 ref|NP_958267.1|hypothetical protein 33 0.32 >ref|NP_040653.1|50-kDa virion protein Length = 483 Score = 33.5 bits (75), Expect = 0.25 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Frame = +1 Query: 2233 LGITAFAADGSVLATTEVLANILTGRLDRATLTAPPGQVISSIELNGVRDTWLIDDIEYV 2412 L + +F+A + +TEV A T R+ T+ PP ++ L+ VRD + +E + Sbjct: 11 LALFSFSAIAAGPVSTEVAAGTTTYRVTNTTVRTPP-----NVTLSPVRD--ITPYVEKI 63 Query: 2413 INPALG-ARSARLVLAQRVDDVVKPG 2487 N L A RL++AQR V G Sbjct: 64 PNKGLAQAAQGRLIVAQRAASVPVTG 89 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 33.1 bits (74), Expect = 0.32 Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 9/81 (11%) Frame = -1 Query: 2638 PAEHR*PTH-QGDSFWRQA------GSRRHRQTATQSWSQGPAPDRNFPAPDPGSTSHPV 2480 PA R P H + D R+A G RRH A ++ + AP+ APDPG HP Sbjct: 43 PARDRSPDHPEPDHPCRRAPSRPAAGPRRHPPVA-RTRPRTRAPEC---APDPGPAVHPA 98 Query: 2479 SPHHQPAEPAPD--GPTALPR 2423 +P PA PA P PR Sbjct: 99 APGCAPAAPAAPEYAPALRPR 119 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,511,753 Number of Sequences: 14420 Number of extensions: 730915 Number of successful extensions: 2222 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1776 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2221 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2686867479 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig863 (4253 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,622,656 Number of Sequences: 14420 Number of extensions: 482395 Number of successful extensions: 1371 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1208 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1369 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 2098099158 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig864 (4911 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 55 9e-08 ref|NP_046798.1|Old 35 0.076 >ref|NP_046572.1|ABC transporter Length = 705 Score = 54.7 bits (130), Expect = 9e-08 Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 5/180 (2%) Frame = +1 Query: 874 VDNLDLVVPAGTIFGFLGPNGAGKTTTVRMLCALIAPSSGSARVAGFDVQT-EADSVRAN 1050 V++++L++ +G +G GK+T + L L S + G D+ + S+R Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 1051 TGILTETPALYDTLSALENLTF---FARLYGLSATQASERAAHYLRLFELWERRNDPVGG 1221 + E P L+ + ENL F + +A S+ L + + + G Sbjct: 559 IVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGS 617 Query: 1222 -FSKGMRQKLAIARALLHDPAVLFLDEPTSGLDPAASRSVRDVIKSLRASGRTIFLTTHN 1398 S G +Q+LA+ARA+LH P VL LDE S +DP ++ + + + + I L THN Sbjct: 618 NLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDC---LIILITHN 674 >ref|NP_046798.1|Old Length = 586 Score = 35.0 bits (79), Expect = 0.076 Identities = 15/39 (38%), Positives = 26/39 (66%) Frame = +1 Query: 1282 VLFLDEPTSGLDPAASRSVRDVIKSLRASGRTIFLTTHN 1398 ++F+DEP L P+A SVR+ + +L SG + ++TH+ Sbjct: 295 LIFIDEPELYLHPSAINSVRESLVTLSESGYQVIISTHS 333 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,598,481 Number of Sequences: 14420 Number of extensions: 547928 Number of successful extensions: 1610 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1412 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1608 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2422980096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig865 (3517 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,429,110 Number of Sequences: 14420 Number of extensions: 403572 Number of successful extensions: 1363 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1211 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1363 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1723560973 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig866 (4376 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_899299.1|conserved hypothetical protein 35 0.067 >ref|NP_899299.1|conserved hypothetical protein Length = 242 Score = 35.0 bits (79), Expect = 0.067 Identities = 21/74 (28%), Positives = 36/74 (48%) Frame = +2 Query: 2837 LTIGQLSDLHLGHRYSFTNAHQAIDQLLATQPEIIVLTGDLVQTRAAISRLPDVLRRLHA 3016 L + SD+H + + A++++ + ++V+ GD+ + L V R A Sbjct: 4 LKVYYCSDIHNDY-----HDENALERITGDKDAVLVVAGDINSKGRTVRDLEAVADRWRA 58 Query: 3017 PLGVYAVPGNHDYW 3058 V AVPGNHD+W Sbjct: 59 ---VIAVPGNHDWW 69 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,160,776 Number of Sequences: 14420 Number of extensions: 491813 Number of successful extensions: 1545 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1369 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1543 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2142192038 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig867 (5640 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_862860.1|gp21 33 0.33 >ref|NP_862860.1|gp21 Length = 256 Score = 33.1 bits (74), Expect = 0.33 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 11/104 (10%) Frame = +1 Query: 2578 PSARILQSYQI-----DQERIYQVLMEIRGSQRSDDPSAESRYEILSKYSV--DLTELAR 2736 P +IL++ + + ERI+ +++ + +D R L K+S+ D+ + A Sbjct: 30 PLIKILRTNDVLCRLCESERIHAE-NQLKVDELADAEHERERKFYLEKFSLYDDVLKNAT 88 Query: 2737 EDKLDPVIGREAE----ITRVIRILSRRTKNNPVLVGETGVGKT 2856 D D +EAE + R+ R S +NN V GE G GK+ Sbjct: 89 LDNFDTPTEKEAEKLAFVKRICREWSEGARNNIVFQGEAGTGKS 132 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,769,557 Number of Sequences: 14420 Number of extensions: 634213 Number of successful extensions: 2083 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1742 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2083 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2779086898 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig868 (4764 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817516.1|gp67 33 0.37 >ref|NP_817516.1|gp67 Length = 109 Score = 32.7 bits (73), Expect = 0.37 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Frame = -2 Query: 248 VIDQERELVEAAVEQYRKLGRDQPTPSDQIVLSAIA--GKPWRTSYPGRRGIFVDADGRL 75 ++++ +EL ++R+LG P + L +A G W SY G DA+ Sbjct: 6 ILEKAKELAPTRWSRHRELGLRPNEPCCILGLVGVARFGNDWVPSYRSLEG---DAEASA 62 Query: 74 ALISMAAVSLRIEFSAAVLAGTY 6 A+ ++AAVSL+ A TY Sbjct: 63 AVEALAAVSLKTGADAVAQVYTY 85 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,160,275 Number of Sequences: 14420 Number of extensions: 537446 Number of successful extensions: 1572 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1396 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1571 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2345684507 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig869 (5423 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_758949.1|ORF58 37 0.022 ref|NP_665964.1|putative plasmid partitioning protein Soj 33 0.32 ref|YP_006968.1|pore-forming tail tip protein 33 0.32 >ref|NP_758949.1|ORF58 Length = 210 Score = 37.0 bits (84), Expect = 0.022 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Frame = -3 Query: 4581 KKELSMSLILAIYG-KGGIGKSTTSANLSAAMALKGAKVLQIGCDPKHDST 4432 ++E M+ ++AI KGG GK+T S N+++ + G KVL + DP+ +T Sbjct: 14 REENEMAKLIAILNQKGGAGKTTISTNVASQLHADGHKVLLVDLDPQGSAT 64 >ref|NP_665964.1|putative plasmid partitioning protein Soj Length = 256 Score = 33.1 bits (74), Expect = 0.32 Identities = 16/36 (44%), Positives = 23/36 (63%) Frame = -3 Query: 4539 KGGIGKSTTSANLSAAMALKGAKVLQIGCDPKHDST 4432 KGG GK+TT+ N++ A+ G VL I DP+ +T Sbjct: 9 KGGAGKTTTTLNVAGALNQLGNDVLVIDLDPQGHAT 44 >ref|YP_006968.1|pore-forming tail tip protein Length = 1219 Score = 33.1 bits (74), Expect = 0.32 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +1 Query: 3904 EPRAANEIVVRNAPNDFGADLL--GKLVEQVGATAIFVVHAIGNDAGQFHL 4050 E R E V+R A D G LL GKL EQ+GA + A+ D G F + Sbjct: 512 EERTKTEKVLRQAVQDTGEALLRNGKLAEQLGAKMKYADTAVPGDKGVFEV 562 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,649,012 Number of Sequences: 14420 Number of extensions: 632867 Number of successful extensions: 2046 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 1615 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2033 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2666547946 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig870 (3742 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 56 2e-08 ref|NP_040731.1|morphogenesis protein A 34 0.13 ref|YP_024939.1|gp19 32 0.49 >ref|NP_945090.1|gp59 Length = 429 Score = 56.2 bits (134), Expect = 2e-08 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 13/120 (10%) Frame = +1 Query: 3421 LSWVFSIYVLG-----NLVGTPTIAALSDRFGRRALYVVSLSGFALGSLLVAIAPSFP-- 3579 LS + S+ +G +G I ++D+ GRRA V+++ G+ ++ AP++ Sbjct: 59 LSLLLSVSTIGVGFFMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDA 118 Query: 3580 ------MLLLGRLVQGVSAGGVIPVASAVIGDTFPPERRGSALGLIGAVFGIAFLIGPII 3741 M+++ RL+QG SAGG + A+A + + P ER G I A G A ++ ++ Sbjct: 119 GLGAPLMIVVARLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVL 178 Score = 33.9 bits (76), Expect = 0.13 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 5/72 (6%) Frame = +1 Query: 3466 TPTIAALSDRFGRR-----ALYVVSLSGFALGSLLVAIAPSFPMLLLGRLVQGVSAGGVI 3630 TP I LSD FGRR AL V ++ + L ++L A AP LL+ ++V G+ Sbjct: 296 TPLIGHLSDLFGRRWFLAGALLVAIVAAYPLFAMLNA-APGLKTLLVFQVVFGLVIASYE 354 Query: 3631 PVASAVIGDTFP 3666 A + D FP Sbjct: 355 GPILAALSDMFP 366 >ref|NP_040731.1|morphogenesis protein A Length = 365 Score = 33.9 bits (76), Expect = 0.13 Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Frame = -3 Query: 1982 CTRVWRMDADGYMCW*S-----VPDGAYR----CEGEVKPLP-HTPYTCQRGNR*GWYCP 1833 CT VWR DA Y+ W S DG+ R PLP ++G+ G Sbjct: 211 CTCVWRGDASAYLAWTSDKEVMCADGSVRYITWVNVHESPLPFDVGKKLKKGDLMGHTGI 270 Query: 1832 SRHVTGRVDHLWHAGLADGCGYAMYTGDP 1746 +VTG DH WH + DG Y +T P Sbjct: 271 GGNVTG--DH-WHFNVIDGKEYQGWTKKP 296 >ref|YP_024939.1|gp19 Length = 357 Score = 32.0 bits (71), Expect = 0.49 Identities = 39/156 (25%), Positives = 60/156 (38%) Frame = +3 Query: 2142 PSGTSSDNSLIPRSAASWGCIPSSSNSTTRRANATRVIDSPQPVHTAAPSAVA*RPQPMS 2321 PS ++S ++L + GC S + ST A P T P+A P + Sbjct: 81 PSCSTSSSALNYTTGTGIGCNSSINASTLGGTAAAAYALLASPTFTGTPTA----PTASA 136 Query: 2322 GVSPTRPGNLKGVPPVELAATSWPD*SRAIAPTVS*PLAGGGGGDPCAFQASHNWRSRST 2501 G + T +LA T++ + A P G P A A + + Sbjct: 137 GTNTT-----------QLATTAFTNAIFAAPPAF-------GNTTPAAVSA-----TTLS 173 Query: 2502 TNSALSQKGIPTVAANASAPGPTSIVAGPFNTWRAS 2609 +S +S G T A+ A G T+ AG F T +A+ Sbjct: 174 ASSTVSGSGFSTYLASPPAIGATTPAAGKFTTLQAT 209 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,798,145 Number of Sequences: 14420 Number of extensions: 504935 Number of successful extensions: 1464 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 1224 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1460 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1825887507 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig871 (4181 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_848223.1|hypothetical protein 36 0.029 >ref|NP_848223.1|hypothetical protein Length = 842 Score = 36.2 bits (82), Expect = 0.029 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 4/107 (3%) Frame = +3 Query: 780 DPGNPDTLNKFYADLQMYTNGPSSTDPQQYLQGWICA----EVASSANQWNGNNDGRYCN 947 D NPDTL A + + NG QQ G A ++ +S ++ GN + Sbjct: 341 DASNPDTLKALCASIIQHENGSQPYSDQQLATGVSAAIGLSQLPTSTKRYTGNAAFDAAS 400 Query: 948 PEYDALFEELKGELDLQRRAELAIQMNDLLVNDVAVIPLINRRTPNA 1088 PE A F ++ Q++AE + D V D + + PNA Sbjct: 401 PEAQATFLRQADQIRKQQQAEYRTNI-DSRVRDASAAYMRGVDFPNA 446 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,167,211 Number of Sequences: 14420 Number of extensions: 485123 Number of successful extensions: 1532 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1278 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1517 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 2059894014 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig872 (4258 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,960,568 Number of Sequences: 14420 Number of extensions: 506555 Number of successful extensions: 1574 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1377 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1574 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 2099691039 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig873 (5076 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,216,587 Number of Sequences: 14420 Number of extensions: 438179 Number of successful extensions: 1659 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1319 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1648 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2485235190 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig874 (6163 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,240,476 Number of Sequences: 14420 Number of extensions: 763836 Number of successful extensions: 2347 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1958 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2347 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 3021359571 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig875 (5326 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 49 7e-06 ref|YP_024895.1|putative membrane protein 37 0.017 ref|NP_040608.1|ea59 35 0.11 ref|NP_046798.1|Old 34 0.18 ref|NP_818265.1|gp215 33 0.41 >ref|NP_046572.1|ABC transporter Length = 705 Score = 48.5 bits (114), Expect = 7e-06 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 7/204 (3%) Frame = +2 Query: 1316 IDLRIDPGEFVAIVGESGSGKSTLLNIITGIDRASSGEVRVAGADLMQMPESRMASWRGR 1495 I+L +D + V I+GESG+GKST ++ + + + + G D+ + S R R Sbjct: 502 INLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDH---LSIRKR 558 Query: 1496 TVGIVXXXXXXXXXXXXXENVMLPMDFCH-------IGTXXXXXXXXXXXXXXVGLADQA 1654 V I EN+ + F I + L++ Sbjct: 559 IVYI--DENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG 616 Query: 1655 DKLPMALSGGQQQRVAIARALANNPPLLVADEPTGNLDSQTAEAVFQLFIELAGQGTTIV 1834 L S GQ+QR+A+ARA+ + P +L+ DE N+D + +++ L I+ Sbjct: 617 SNL----STGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYE---TLHRMDCLII 669 Query: 1835 MVTHDSDLARRAGRVVLVSDGRIV 1906 ++TH+ + + ++ + RI+ Sbjct: 670 LITHNDPSNFKYNKKLVFRNNRII 693 >ref|YP_024895.1|putative membrane protein Length = 93 Score = 37.4 bits (85), Expect = 0.017 Identities = 20/52 (38%), Positives = 31/52 (59%) Frame = +3 Query: 3471 EAELRRQQIIDGALRAFSQLGFERATNRDIARAAGIGSPGLIYHYFKDKTDL 3626 E E R+ I+D A + + GF++AT IA AAG+ + GL+ YF + +L Sbjct: 2 EPEARKALILDAAYKLVKKQGFKKATRTAIAEAAGV-TAGLVGVYFGKRAEL 52 >ref|NP_040608.1|ea59 Length = 525 Score = 34.7 bits (78), Expect = 0.11 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Frame = -2 Query: 5292 KKGVYIIEEPENGIHPRALEAVYQSLSSVYE---GQIFCTTHSPILLNLARPRELLCFAL 5122 +K + + +EPE +HP L A ++LS + + G THSP++L P+ + L Sbjct: 384 EKSLVLFDEPEVHLHPPLLSAFLRTLSDLLDARNGVAIIATHSPVVLQEV-PKSCMWKVL 442 Query: 5121 TQHGATDIVPGD 5086 A +I+ D Sbjct: 443 RSREAINIIRPD 454 >ref|NP_046798.1|Old Length = 586 Score = 33.9 bits (76), Expect = 0.18 Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%) Frame = -2 Query: 5301 SREKKGVYIIEEPENGIHPRALEAVYQSLSSVYEG--QIFCTTHSPILLN 5158 S++ + I+EPE +HP A+ +V +SL ++ E Q+ +THS +L+ Sbjct: 289 SKKSNTLIFIDEPELYLHPSAINSVRESLVTLSESGYQVIISTHSASMLS 338 >ref|NP_818265.1|gp215 Length = 147 Score = 32.7 bits (73), Expect = 0.41 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Frame = +1 Query: 2008 GAQSAPSPVPTGEPVVPPLSVEGRVVPAQEAWLRFERSGIVTAILVDEGD-----TVTAG 2172 G AP+P P P P VV + WL FE+ +TA GD VT G Sbjct: 87 GNPVAPTPPPAEAPKPP-------VVEQRAGWLHFEKLSDLTAYTAQHGDIPTSTKVTVG 139 Query: 2173 QALIQ 2187 +L+Q Sbjct: 140 TSLVQ 144 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,332,925 Number of Sequences: 14420 Number of extensions: 586704 Number of successful extensions: 1986 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 1665 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1985 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2614967593 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig876 (5572 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,739,162 Number of Sequences: 14420 Number of extensions: 589503 Number of successful extensions: 1751 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1422 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1749 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2743136955 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig877 (4416 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_758910.1|ORF17 35 0.089 >ref|NP_758910.1|ORF17 Length = 359 Score = 34.7 bits (78), Expect = 0.089 Identities = 21/56 (37%), Positives = 28/56 (50%) Frame = -2 Query: 3233 RPGAMVVDIGAGRGWAAKQFAIRGCHAVAVEINDDDQIGLGRSLALMQHANVQYDL 3066 R G +V+D G G AK GCH V VE++DD +SLA + Q D+ Sbjct: 304 REGMVVLDPFMGSGATAKACIELGCHFVGVEMDDDIFSATAKSLAEYKTEEEQKDI 359 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,768,885 Number of Sequences: 14420 Number of extensions: 474165 Number of successful extensions: 1410 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1269 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1410 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2162699031 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig878 (5662 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,504,507 Number of Sequences: 14420 Number of extensions: 668952 Number of successful extensions: 1932 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1655 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1930 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2790028185 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig879 (5593 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_803744.1|ORF178 45 6e-05 ref|NP_817695.1|gp17 39 0.008 >ref|NP_803744.1|ORF178 Length = 1451 Score = 45.4 bits (106), Expect = 6e-05 Identities = 91/399 (22%), Positives = 150/399 (37%), Gaps = 39/399 (9%) Frame = +2 Query: 3674 PKQVVSVSTSLIPFLEHDDANRALMGSNMQRQAVPLLRPDAPIVGTGMEYRAARDSGQV- 3850 P +++S S L EHDD R S Q+Q + V TG E A+ + + Sbjct: 1054 PARLLSTSALLGVATEHDDPKRINFISIQQQQGIYADGYTVTPVRTGYEQIIAQRTSSIF 1113 Query: 3851 -IVARRDGVVVSTTSERIVIEEDDGNQTEYRLRKFMRSNQDTCINQRPAVV----RGQRV 4015 + A +DG VV+ I ++ DGN Y+L +N +V +G + Sbjct: 1114 AVAAEQDGEVVAIDEYGIQVKYADGNVFGYQLGTV--HGTAAGVNYPHILVTSLKKGDKF 1171 Query: 4016 KAGDVIADSSSTDQGELALGQNVLVAYMPWEGG-----NFEDAI--LVSERLVREDIFTS 4174 K GD I + + VL W+ G F+D + L ++ ED+ Sbjct: 1172 KRGDTITYNKRYFSEDRYTPGQVL-----WKAGCMAVVAFDDNLDTLEDGSVISEDLAKR 1226 Query: 4175 IHIEKYEVEARDTKLGPEEITRDIPNVGQESLRN----------------LDERGIIYIG 4306 ++ + ++ D + ++ RD+ VG N DE I + Sbjct: 1227 LNTQTTAIKNIDVRF--DQTIRDMVKVGDHVDLNSILCIIEDPETAAHSLYDEASIETLR 1284 Query: 4307 --AEVQPNDILVGKITP-----KGETDLTAEERLLRAIFGEKAREVKDSSLRVPNGVRGK 4465 + P LVG ++ GE D A +K R + SL+ P Sbjct: 1285 KLSAYSPRAKLVGTVSKIECFYHGEIDDMTPSLQALANTSDKQRAERAKSLKEPTFTGQV 1344 Query: 4466 VIDVKVFSRSEGAELPVGVNQTVRVLLCQKRKISAGDKMAGRHGNKGVVSRVLPIEDMPF 4645 + +V R+ + + +RV + GDK + K V SRV+ + Sbjct: 1345 DANYRVKGRALEYD-----HMIIRVYIDHDIPCGVGDKGVVANQMKTVFSRVMTGRNE-- 1397 Query: 4646 LPDGRPVDIILNPIGVPSRMNIG-QILETHLG--WAAAR 4753 DGR +D++ V RM + +I+ T G WAA + Sbjct: 1398 TEDGRNIDLLFGNTSVEERMVLSPKIIATTTGILWAAGK 1436 >ref|NP_817695.1|gp17 Length = 553 Score = 38.5 bits (88), Expect = 0.008 Identities = 29/81 (35%), Positives = 31/81 (38%), Gaps = 6/81 (7%) Frame = -1 Query: 949 RRALR-PDGEQLPAPDRHRRCSDCGPDLPCRSGRRCTVSRQDQCRRRYHAPRNECRSHH- 776 RR R PD LPAP RH GPD P G Q R H PR+ R Sbjct: 440 RRVFRVPDAAALPAPLRH------GPDAPQHRGHGADPGAPVQRRGHLHIPRHPVRHPRL 493 Query: 775 ----GGRLRSPLRPPGCGGAH 725 GG P+RP G H Sbjct: 494 HVSAGGSQECPVRPVCVGARH 514 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,089,660 Number of Sequences: 14420 Number of extensions: 663615 Number of successful extensions: 2079 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1741 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2076 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2754078242 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig880 (5736 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,217,375 Number of Sequences: 14420 Number of extensions: 721938 Number of successful extensions: 2016 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1752 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2015 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2801455389 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig881 (5810 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,201,824 Number of Sequences: 14420 Number of extensions: 712894 Number of successful extensions: 2056 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1747 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2054 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2840170914 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig882 (6048 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046976.1|tail protein 33 0.27 ref|NP_817595.1|gp4 33 0.46 >ref|NP_046976.1|tail protein Length = 1186 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/62 (29%), Positives = 31/62 (50%) Frame = +1 Query: 4033 PDRWSPQSRLVVDDAEAHELCVLPAQYRIVVNPVAEMGIHKLPECPPGQLIDKFFGVWSD 4212 P+ W + +++D+A+ + V +P+ E + K E PPG LI F +W+D Sbjct: 815 PEEWEKRKGILMDNAKKY-----------VEDPIREQ-LRKFAENPPGYLIQGFSQMWND 862 Query: 4213 TK 4218 K Sbjct: 863 FK 864 >ref|NP_817595.1|gp4 Length = 344 Score = 32.7 bits (73), Expect = 0.46 Identities = 17/33 (51%), Positives = 20/33 (60%) Frame = -3 Query: 5932 ASVTGYEGPRTCTGVRGPMNGTGARGIPEPEGP 5834 A V G EGPR TG +GP TG +G P+GP Sbjct: 113 APVQGVEGPRGLTGPQGP---TGPQGPQGPQGP 142 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,125,727 Number of Sequences: 14420 Number of extensions: 781219 Number of successful extensions: 2620 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1872 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2562 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2962511973 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig883 (5212 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 58 9e-09 ref|NP_795616.1|putative helicase 45 8e-05 ref|NP_795446.1|putative DEAD box family helicase 42 5e-04 ref|NP_695088.1|putative helicase 41 0.001 ref|NP_049999.1|putative helicase 41 0.001 ref|NP_049952.1|putative helicase 41 0.001 ref|NP_056709.1|putative helicase 41 0.001 ref|NP_050128.1|putative DEAH-family helicase 39 0.004 ref|NP_049421.1|putative helicase 39 0.006 ref|NP_511031.1|helicase 36 0.036 ref|YP_024499.1|putative helicase 35 0.11 ref|NP_445687.1|putative helicase 34 0.14 ref|NP_943831.1|gp53 34 0.14 >ref|NP_046572.1|ABC transporter Length = 705 Score = 58.2 bits (139), Expect = 9e-09 Identities = 50/187 (26%), Positives = 90/187 (48%) Frame = -1 Query: 4612 VKNVNLAIEKNRITALIGPSGCGKSTVLRSFNRMNDLVPSARVEGEILFHGENIYAPGVD 4433 V+++NL +++ +IG SG GKST +S +++ VP + I +G +I D Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYK-VP----DKSIYLNGLDINR--YD 551 Query: 4432 PVNVRRRIGMVFQKPNPFPKSIYENVAYGPRINGWRLSKREMDELVERSLRGAALWDEVK 4253 +++R+RI + + P F +I EN+ G + + + + L + Sbjct: 552 HLSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFI--CNLDKQYS 609 Query: 4252 DKXXXXXXXXXXXXXQRLCIARALAVEPEVILMDEPCSALDPISTLKIEELMFELRQRYT 4073 K QRL +ARA+ +P+V+++DE S +DP +T I E + R Sbjct: 610 YKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLH--RMDCL 667 Query: 4072 IVIVTHN 4052 I+++THN Sbjct: 668 IILITHN 674 >ref|NP_795616.1|putative helicase Length = 409 Score = 45.1 bits (105), Expect = 8e-05 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 34/221 (15%) Frame = +1 Query: 1297 GTHALITETVQFAQLGLVVVDEQHRFGVEQRLRLKNKGYNPHMLVMTATPIPRTLTMTIY 1476 G +L+ + +Q ++++DE H + L++ + N ++L+ T TP+ + Sbjct: 46 GVQSLVRKLDSLSQPEVILIDEAHHSKAKSYLKIIDHFKNAYVLMFTGTPV------RLN 99 Query: 1477 GDLDVSVLDERPPGRQ-------------------------------EIRTKRVGRAERA 1563 GD + D+ G+ E V ++ ++ Sbjct: 100 GDGFDDIADDLVAGKSVKWLQEHGNIANFKYYAPSMIDNSALKKRGGEFTKDSVNQSMKS 159 Query: 1564 KVYRHIRK---QVAEGRQVYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVALLHGK 1734 +Y + K ++A+G+Q V VE S + +M+ + ++ + GK Sbjct: 160 VIYGDVIKHYEKLAKGKQAIVYTHSVEASHLVS-----DMFNQAGYQS------QSVSGK 208 Query: 1735 LSAREKDDVMRAFRDHQYDILVATAVIEVGIDVPNATTIVI 1857 E+++ M+AFRD + ILV + GID+PN ++ Sbjct: 209 TPKSEREEAMQAFRDGKLRILVNCELFTEGIDLPNVDVCIM 249 >ref|NP_795446.1|putative DEAD box family helicase Length = 409 Score = 42.4 bits (98), Expect = 5e-04 Identities = 43/221 (19%), Positives = 89/221 (40%), Gaps = 34/221 (15%) Frame = +1 Query: 1297 GTHALITETVQFAQLGLVVVDEQHRFGVEQRLRLKNKGYNPHMLVMTATPIPRTLTMTIY 1476 G +L+ + +Q ++++ E H + L++ + N ++L+ T TP+ + Sbjct: 46 GVQSLVRKLDSLSQPEVILIGEAHHSKAKSYLKIIDHFKNAYVLMFTGTPV------RLN 99 Query: 1477 GDLDVSVLDERPPGRQ-------------------------------EIRTKRVGRAERA 1563 GD + D+ G+ E V ++ ++ Sbjct: 100 GDGFDDIADDLVAGKSVKWLQEHGNIANFKYYAPSMIDNSALKKRGGEFTKDSVNQSMKS 159 Query: 1564 KVYRHIRK---QVAEGRQVYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVALLHGK 1734 +Y + K ++A+G+Q V VE S + +M+ + ++ + GK Sbjct: 160 VIYGDVIKHYEKLAKGKQAIVYTHSVEASHLVS-----DMFNQAGYQS------QSVSGK 208 Query: 1735 LSAREKDDVMRAFRDHQYDILVATAVIEVGIDVPNATTIVI 1857 E+++ M+AFRD + ILV + GID+PN ++ Sbjct: 209 TPKSEREEAMQAFRDGKLRILVNCELFTEGIDLPNVDVCIM 249 >ref|NP_695088.1|putative helicase Length = 443 Score = 41.2 bits (95), Expect = 0.001 Identities = 29/97 (29%), Positives = 44/97 (45%) Frame = +1 Query: 1567 VYRHIRKQVAEGRQVYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVALLHGKLSAR 1746 V RH K +A+G+Q V VE SE + E+ Y + + GK Sbjct: 203 VIRHYEK-LAKGKQAIVYTHSVEASESVSNTFNEQGYTSIA-----------ISGKTPPE 250 Query: 1747 EKDDVMRAFRDHQYDILVATAVIEVGIDVPNATTIVI 1857 +D M+AFRD + I+V + GID+PN ++ Sbjct: 251 VRDRAMQAFRDGKLTIMVNCELFTEGIDLPNVDVCIM 287 >ref|NP_049999.1|putative helicase Length = 443 Score = 41.2 bits (95), Expect = 0.001 Identities = 29/97 (29%), Positives = 44/97 (45%) Frame = +1 Query: 1567 VYRHIRKQVAEGRQVYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVALLHGKLSAR 1746 V RH K +A+G+Q V VE SE + E+ Y + + GK Sbjct: 203 VIRHYEK-LAKGKQAIVYTHSVEASESVSNTFNEQGYTSIA-----------ISGKTPPE 250 Query: 1747 EKDDVMRAFRDHQYDILVATAVIEVGIDVPNATTIVI 1857 +D M+AFRD + I+V + GID+PN ++ Sbjct: 251 VRDRAMQAFRDGKLTIMVNCELFTEGIDLPNVDVCIM 287 >ref|NP_049952.1|putative helicase Length = 443 Score = 41.2 bits (95), Expect = 0.001 Identities = 29/97 (29%), Positives = 44/97 (45%) Frame = +1 Query: 1567 VYRHIRKQVAEGRQVYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVALLHGKLSAR 1746 V RH K +A+G+Q V VE SE + E+ Y + + GK Sbjct: 203 VIRHYEK-LAKGKQAIVYTHSVEASESVSNTFNEQGYTSIA-----------ISGKTPPE 250 Query: 1747 EKDDVMRAFRDHQYDILVATAVIEVGIDVPNATTIVI 1857 +D M+AFRD + I+V + GID+PN ++ Sbjct: 251 VRDRAMQAFRDGKLTIMVNCELFTEGIDLPNVDVCIM 287 >ref|NP_056709.1|putative helicase Length = 443 Score = 41.2 bits (95), Expect = 0.001 Identities = 29/97 (29%), Positives = 44/97 (45%) Frame = +1 Query: 1567 VYRHIRKQVAEGRQVYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVALLHGKLSAR 1746 V RH K +A+G+Q V VE SE + E+ Y + + GK Sbjct: 203 VIRHYEK-LAKGKQAIVYTHSVEASESVSNTFNEQGYTSIA-----------ISGKTPPE 250 Query: 1747 EKDDVMRAFRDHQYDILVATAVIEVGIDVPNATTIVI 1857 +D M+AFRD + I+V + GID+PN ++ Sbjct: 251 VRDRAMQAFRDGKLTIMVNCELFTEGIDLPNVDVCIM 287 >ref|NP_050128.1|putative DEAH-family helicase Length = 455 Score = 39.3 bits (90), Expect = 0.004 Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 21/191 (10%) Frame = +1 Query: 1348 VVVDEQHRFGVEQRLRLKNKGYNPHMLVMTATPIPRTLT--MTIYGDL----DVSVLDER 1509 ++VDE H + ++ N N H+L TATP+ + IY DL +S L E Sbjct: 103 ILVDEAHHSLAKTYKKINNHFKNAHILGFTATPVRLSGKGFKDIYDDLVLGPKISWLIEN 162 Query: 1510 ----PPGRQEIRTKRVGRAERAKVYRHIRKQVAEGRQVYVICPLVEESEKL--------- 1650 P + + +++ + K + + V +++ K Sbjct: 163 HYLAPYTYYSVNLIDQTKLKKSSTGDYTHKSIENAGKNIVYGDVIQSYHKFANNTKAIIY 222 Query: 1651 --DLPSAEEMYERLQHEVFPDLRVALLHGKLSAREKDDVMRAFRDHQYDILVATAVIEVG 1824 + S +++ + P V GK ++D M+ FRD + ILV + G Sbjct: 223 SYSVHSCQQIAKEFNKNNIPAKEV---DGKTKKEDRDKAMQDFRDGKIKILVNAELYGEG 279 Query: 1825 IDVPNATTIVI 1857 +DVP+ T+++ Sbjct: 280 VDVPDCETVIM 290 >ref|NP_049421.1|putative helicase Length = 443 Score = 38.9 bits (89), Expect = 0.006 Identities = 27/97 (27%), Positives = 43/97 (44%) Frame = +1 Query: 1567 VYRHIRKQVAEGRQVYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVALLHGKLSAR 1746 V RH K +A+G+Q V VE SE + + Y + + GK Sbjct: 203 VIRHYEK-LAKGKQAIVYTHSVEASESVSNTFKKNGYTSIA-----------ISGKTPPE 250 Query: 1747 EKDDVMRAFRDHQYDILVATAVIEVGIDVPNATTIVI 1857 ++ M+AFRD + I+V + GID+PN ++ Sbjct: 251 VRERAMQAFRDRELTIMVNCELFTEGIDLPNVDVCIM 287 >ref|NP_511031.1|helicase Length = 418 Score = 36.2 bits (82), Expect = 0.036 Identities = 34/160 (21%), Positives = 68/160 (42%) Frame = +1 Query: 1378 VEQRLRLKNKGYNPHMLVMTATPIPRTLTMTIYGDLDVSVLDERPPGRQEIRTKRVGRAE 1557 +E + K Y P + + RT G+ D++ LD++ KR+ + Sbjct: 135 IENQFLAHYKYYAPETVQTETLNVKRT------GEFDMTSLDDQ-------FNKRMIWGD 181 Query: 1558 RAKVYRHIRKQVAEGRQVYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVALLHGKL 1737 K Y+ ++A+G Q + + +SEK+ + A + GK Sbjct: 182 VIKHYQ----KLADGEQAILYASSIYQSEKMAASFNAA-----------GISSAHIDGKT 226 Query: 1738 SAREKDDVMRAFRDHQYDILVATAVIEVGIDVPNATTIVI 1857 +DD+++ FR+ + +L +I G DVP+ +T+++ Sbjct: 227 PKPIRDDIIKQFREGELKVLCNLDLIGEGFDVPDCSTVIM 266 >ref|YP_024499.1|putative helicase Length = 582 Score = 34.7 bits (78), Expect = 0.11 Identities = 18/71 (25%), Positives = 38/71 (53%) Frame = +1 Query: 1705 DLRVALLHGKLSAREKDDVMRAFRDHQYDILVATAVIEVGIDVPNATTIVIEGAERFGLA 1884 D+ LHG++ + + + + R + +++AT++I+ G+D+ +++ GA G Sbjct: 469 DVEHYFLHGEIDSETRREKLNDMRSGKLKVMIATSLIDEGVDISGINALIL-GA---GGK 524 Query: 1885 QLHQFRGRVGR 1917 L Q R+GR Sbjct: 525 SLRQTLQRIGR 535 >ref|NP_445687.1|putative helicase Length = 559 Score = 34.3 bits (77), Expect = 0.14 Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 5/98 (5%) Frame = +1 Query: 1732 KLSAREKDDVMRAFRDHQYDILVATAVIEVGIDVPNATTIVI--EGAERFGLAQLHQFRG 1905 K E+ + + A ++ + +L++T++ + G+D+PN +V+ +G R L Q Sbjct: 456 KTKLEERMEKIEALKNEKLQVLISTSLADEGLDIPNLRLVVLLTQGKSRIKLIQRIGRVM 515 Query: 1906 RVGRGHHQSYCILI---SDSDNQQSKERLAALEQTTDG 2010 RV + + Y + + D +QS +++ +E +G Sbjct: 516 RVSQNKRKGYILDVIYNHDLFIKQSVKKMNFIENEYNG 553 >ref|NP_943831.1|gp53 Length = 559 Score = 34.3 bits (77), Expect = 0.14 Identities = 38/155 (24%), Positives = 58/155 (37%), Gaps = 5/155 (3%) Frame = +1 Query: 1660 SAEEMYERLQHEVFPDLRVALLHGKLSAREKDDVMRAFRDHQYDILVATAVIEVGIDVPN 1839 +A + + L FP + V G +S E+ V A+R+ LV V+ G D P Sbjct: 250 AAHHIADALTAADFPAVAVT---GSMSYAERQPVYEAYRNGTAKALVTVQVLTEGADFPM 306 Query: 1840 ATTIVIEGAERFGLAQLHQFRGRVGRGHHQSYCILISDSDNQQSKERLAALEQTTDGFKL 2019 +V+ R Q GR R + L+ D +L L Q G Sbjct: 307 CDCVVLARPTR-SRNLYSQMIGRALRLYDGKQDALVLDLAGSSRSMKLVNLTQLVPGVDA 365 Query: 2020 AEID-----LQLRGPGEFFGTRQSGTPDLKMAQQG 2109 AE+ +++ E G TP K+ +QG Sbjct: 366 AEVTEDGSVIEIEPDDELPGEGSDPTP--KLVRQG 398 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,744,753 Number of Sequences: 14420 Number of extensions: 593712 Number of successful extensions: 1824 Number of sequences better than 0.5: 13 Number of HSP's better than 0.5 without gapping: 1527 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1819 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2555572035 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig884 (7004 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 44 3e-04 >ref|NP_046572.1|ABC transporter Length = 705 Score = 43.5 bits (101), Expect = 3e-04 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 5/183 (2%) Frame = -1 Query: 5006 IIGPNGAGKTSLLNCISGLYRPQQGQIRFEGRNIIGLPPHQIARLGIARSFQNIELFRHM 4827 IIG +G GK++ +S LY+ I G + I H R I +N LF+ Sbjct: 514 IIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLD-INRYDHLSIRKRIVYIDENPFLFKG- 571 Query: 4826 TVVDNLMLGRHIHMRSGIFSGGFYWGRAQREEVEHREFVEQ----VIDLLEIQSIRKKMV 4659 T+ +NL +G IF + E+E+ + Q + +L + S + Sbjct: 572 TIKENLCMGE-------IF---------DQNEIENACIMSQCHEFICNLDKQYSYKLSEN 615 Query: 4658 GT-LSYGLQKRVELGRALAMNPRLLLLDEPMAGMNNEEKEDMARFILDINEEYGTTIVLI 4482 G+ LS G ++R+ L RA+ P++L+LDE ++ ++ D + I + I+LI Sbjct: 616 GSNLSTGQKQRLALARAILHQPQVLILDESLSNID----PDNTKLIYETLHRMDCLIILI 671 Query: 4481 EHD 4473 H+ Sbjct: 672 THN 674 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,170,212 Number of Sequences: 14420 Number of extensions: 842746 Number of successful extensions: 2420 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 2030 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2417 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3422802431 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig885 (5625 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 47 2e-05 >ref|NP_046572.1|ABC transporter Length = 705 Score = 47.4 bits (111), Expect = 2e-05 Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 3/71 (4%) Frame = +2 Query: 191 KEQAYKYP---GQLSGGQQQRVAIARALAMEPRIMLFDEPTSALDPEMVKEVLDVMKTLA 361 K+ +YK LS GQ+QR+A+ARA+ +P++++ DE S +DP+ K + + TL Sbjct: 606 KQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYE---TLH 662 Query: 362 RSGMTMLCVTH 394 R ++ +TH Sbjct: 663 RMDCLIILITH 673 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,654,175 Number of Sequences: 14420 Number of extensions: 674342 Number of successful extensions: 1945 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1654 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1942 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2771271693 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig886 (8143 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046877.1|putative non-heme haloperoxidase 51 2e-06 ref|NP_817650.1|gp61 44 3e-04 ref|NP_061553.1|Orf57 35 0.16 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 50.8 bits (120), Expect = 2e-06 Identities = 30/101 (29%), Positives = 50/101 (49%) Frame = -1 Query: 370 GQPLVLIHGWDCSSFWWHHVVDPLAQAGYRVISYDLKGHGFSDTDPRQNYTVAGFSADLQ 191 G PLV +HG S+ + ++ LA+ G+RVI+ D HG S + P +TV + Sbjct: 22 GAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLP-TGHTVEDMTRVTL 80 Query: 190 ALIRALDLGAVHLAAFSLGAFVGLHVAAHHPDMVRSLIFFN 68 + LD+ A S+G + + +AA HP V + + + Sbjct: 81 KTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLD 121 >ref|NP_817650.1|gp61 Length = 274 Score = 43.9 bits (102), Expect = 3e-04 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Frame = -1 Query: 370 GQPLVLIHGWDCSSFWWHHVVDPLAQAGYRVISYDLKGHGFSDTDPRQNYTVAGFSADLQ 191 G PLV +HG S+ + ++ LAQ G+ V + D HG +D+ P +TV + + Sbjct: 24 GVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLP-FGHTVEEMT---R 79 Query: 190 ALIRALDLGAVHLAAF---SLGAFVGLHVAAHHPDMVRSLIFFN 68 +RALD + A F S+G + +A +P+ V + I + Sbjct: 80 VTLRALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILLD 123 >ref|NP_061553.1|Orf57 Length = 202 Score = 34.7 bits (78), Expect = 0.16 Identities = 18/56 (32%), Positives = 30/56 (53%) Frame = -2 Query: 6699 RLLSAPETFKWAINMLRGAERYVIRPLIRPMSKITPGLNKMVAPPEVYDAVDEMFR 6532 RL + ET + A++ ++ +RPL R + + GLN P ++YD DE+ R Sbjct: 136 RLKAENETLRGALHAVQAEVDGNLRPLTRDLVNMVSGLNNGTHPNDIYDHCDEIER 191 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,280,660 Number of Sequences: 14420 Number of extensions: 939822 Number of successful extensions: 2748 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 2158 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2745 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 3965108629 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig887 (6113 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,272,518 Number of Sequences: 14420 Number of extensions: 692062 Number of successful extensions: 2145 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1839 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2145 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2996581635 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig888 (6609 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_795390.1|hypothetical protein 36 0.059 ref|NP_877470.1|Pro-and Ala-rich protein 33 0.39 >ref|NP_795390.1|hypothetical protein Length = 170 Score = 35.8 bits (81), Expect = 0.059 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Frame = -3 Query: 6178 WCKKSVDRIE--LYLYSRTIHEDEIGRPGFFLLMRRGENPISLLASSARLG 6032 W +K D +E LYLY +I+++++ F+ M++ +NP+ L + + G Sbjct: 49 WYEKHKDNLEYDLYLYQMSIYDEKVEEDDFYYWMQKSKNPVRTLINMHQFG 99 >ref|NP_877470.1|Pro-and Ala-rich protein Length = 322 Score = 33.1 bits (74), Expect = 0.39 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Frame = -1 Query: 3216 TLPAGRSAPQGLARIEAGVPPAAPTTRRDKPRRSRQAPLPA-GRSAPQGLARIEAGF*LA 3040 T P + P GLA + A +PPAA T P + P P + AP ++ A LA Sbjct: 2 TQPNEQQLPPGLANLVANIPPAAAPT----PNHVQVMPNPVIQQQAPVQPGQVGAPQQLA 57 Query: 3039 NPATRRDYG*ACLVSPTCRPASPAGASTS*GRGLTRQLIAPADNAPRCPP 2890 P + ++P +P + A G+ + Q APA AP PP Sbjct: 58 IPTQQPQPVPTSAMTPHYQPVAVPAA----GQPVVPQ--APAQPAPVAPP 101 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,490,379 Number of Sequences: 14420 Number of extensions: 813068 Number of successful extensions: 2414 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1931 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2405 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3220287899 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig889 (4054 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,327,869 Number of Sequences: 14420 Number of extensions: 395241 Number of successful extensions: 1177 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1050 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1175 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1991443131 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig890 (6848 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046575.1|putative disulfide oxidoreductase 77 2e-14 ref|NP_665958.1|putative glutaminase 39 0.006 >ref|NP_046575.1|putative disulfide oxidoreductase Length = 148 Score = 77.4 bits (189), Expect = 2e-14 Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 4/116 (3%) Frame = +3 Query: 2940 AMLATVGSLFFSEVLGWIPCELCWYQRILMYPLTVLLFIGIWRDDRKVYLYVLPLSLTGI 3119 + T+ SLF+SE++ + PC LCWYQRI +YP+ ++L IG+ + D YV+ LS G+ Sbjct: 17 SFFGTMASLFYSEIMHFKPCVLCWYQRIFLYPIPIILLIGLLKKDLNSIFYVVFLSSIGL 76 Query: 3120 AVALYHYLMVML----IIXXXXXXXXXXXXFDYINIPGVLSFVKIPFLALVAFIII 3275 +A YHY++ + ++ +Y L F+ +P ++ V F +I Sbjct: 77 IIAFYHYIIQLTQSKSVVCEIGTNSCAKIEVEY------LGFITLPLMSSVCFALI 126 >ref|NP_665958.1|putative glutaminase Length = 191 Score = 39.3 bits (90), Expect = 0.006 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 6/99 (6%) Frame = +3 Query: 3909 GREATEVVLNGLQRLEYR-GYDSAGIAIYHPDAGLQLRRSVGKL-INLQQRVQADPPRGR 4082 G +A E + Q+ E R G S G+A+ D L R VG + I+ + P Sbjct: 9 GDDAPERAVAACQQNEQRSGGHSWGVAVA-VDGELHRERGVGAMPIDAVDAL----PEAD 63 Query: 4083 VGIGHTRWATHGGVTEQNAHP----HRDASGTIVVIQNG 4187 V +GHTR+AT G ++ +NAHP RD ++ NG Sbjct: 64 VALGHTRFATRGEISLRNAHPFEVRDRDGEPVAMLAHNG 102 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,056,778 Number of Sequences: 14420 Number of extensions: 813806 Number of successful extensions: 2398 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1972 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2398 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3343023979 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig891 (5143 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,217,503 Number of Sequences: 14420 Number of extensions: 556178 Number of successful extensions: 1748 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1511 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1747 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2519622092 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig892 (6451 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,097,231 Number of Sequences: 14420 Number of extensions: 732014 Number of successful extensions: 2172 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1852 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2170 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 3170027187 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig893 (7323 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_943898.1|gp44 clamp loader subunit 45 1e-04 ref|NP_891600.1|Gp44 37 0.030 ref|NP_899326.1|gp44 34 0.19 ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase access... 33 0.43 >ref|NP_943898.1|gp44 clamp loader subunit Length = 321 Score = 44.7 bits (104), Expect = 1e-04 Identities = 40/158 (25%), Positives = 66/158 (41%) Frame = +3 Query: 9 ILCFVGPPGVGKTSLGRSIARALGRKFVRTSLGGVRDEAEIRGHRRTYIGALPGRIIQAM 188 IL F PG GKT++ R + + + + S G +R + ++R + + Sbjct: 47 ILLFSKSPGTGKTTMARVLCNEIDAEVMFISGGKLRID-DLRNDLTAFASTM-------- 97 Query: 189 KTAKSRSPVYILDEVDKIGIDFRGDPTSALLEVLDPEQNNAFSDHYLELPFDLSKVIFIA 368 T K V I+DE D G+ + + +E AFS S I Sbjct: 98 -TRKPGGKVIIIDEGDNKGMKAVHEELRSWME--------AFS----------SNCSVIM 138 Query: 369 TANQLEPIPLPLRDRMEIIEISGYTEDEKMEIARGFLI 482 T N +E IP PL+ R IE T+D+K+ + + ++ Sbjct: 139 TCNNVEAIPGPLKSRFRQIEFGNPTQDDKLRMMKEMIV 176 >ref|NP_891600.1|Gp44 Length = 324 Score = 37.0 bits (84), Expect = 0.030 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 9/160 (5%) Frame = +3 Query: 30 PGVGKTSLGRSIARALGRKFVRTS-----LGGVRDEAEIRGHRRTYIGALPGRIIQAM-- 188 PG GKT++ +++ +G ++ + + +RDE R Q++ Sbjct: 52 PGTGKTTVAKALCEDVGVDYLFVNGADCKIDFIRDEIT--------------RFAQSVSL 97 Query: 189 -KTAKSRSPVYILDEVDKIGIDFRGDPTSALLEVLDPEQN-NAFSDHYLELPFDLSKVIF 362 + + + V I+DE D+ G+ D +++ +FS+ Y + V F Sbjct: 98 DEEKREKGKVVIIDEYDRAGL-------------ADAQRHLRSFSEAYS------NNVTF 138 Query: 363 IATANQLEPIPLPLRDRMEIIEISGYTEDEKMEIARGFLI 482 I TAN LE I LR R + I T+D+++ + + ++ Sbjct: 139 IITANDLEGIIPALRSRFDPITFGSPTKDDQLRMMKEMIV 178 >ref|NP_899326.1|gp44 Length = 318 Score = 34.3 bits (77), Expect = 0.19 Identities = 32/174 (18%), Positives = 68/174 (39%) Frame = +3 Query: 30 PGVGKTSLGRSIARALGRKFVRTSLGGVRDEAEIRGHRRTYIGALPGRIIQAMKTAKSRS 209 PG GKT++ R++ +G + + + R ++ + + + Sbjct: 53 PGTGKTTVARAVLADMGYEVLFVNASSSRGIGLVQNDLPAFCSTV---------SFSGNP 103 Query: 210 PVYILDEVDKIGIDFRGDPTSALLEVLDPEQNNAFSDHYLELPFDLSKVIFIATANQLEP 389 ILDE D + D AL +++ N V F+ T N + Sbjct: 104 KAVILDEADNL----TPDAQKALRGLIEQYSKN---------------VRFVLTCNYAQK 144 Query: 390 IPLPLRDRMEIIEISGYTEDEKMEIARGFLIPKQREFHGLREDQIEFTDGAIIK 551 I P+R R++ E Y ++E++ + ++ R +++ + T+ A++K Sbjct: 145 ILTPIRSRLQEFEFV-YNKEEQLSCVKQMIV---RSMQICKQEGVSVTNAAVLK 194 >ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase accessory protein Length = 320 Score = 33.1 bits (74), Expect = 0.43 Identities = 32/173 (18%), Positives = 68/173 (39%) Frame = +3 Query: 30 PGVGKTSLGRSIARALGRKFVRTSLGGVRDEAEIRGHRRTYIGALPGRIIQAMKTAKSRS 209 PG GKT++ +++ + + + + + + +RG + ++ + + + Sbjct: 52 PGTGKTTVAKALCNDINAEMMFVNGSDCKIDF-VRGPLTAFARSV---------SMEGKP 101 Query: 210 PVYILDEVDKIGIDFRGDPTSALLEVLDPEQNNAFSDHYLELPFDLSKVIFIATANQLEP 389 V ++DE D+ G+ +E S I TAN ++ Sbjct: 102 KVIVIDEFDRSGLAESQRHLRTFMEEFS------------------SNCSIIITANNIDG 143 Query: 390 IPLPLRDRMEIIEISGYTEDEKMEIARGFLIPKQREFHGLREDQIEFTDGAII 548 I PLR R +IE TE++K+ + + + R + + IE D ++ Sbjct: 144 IIEPLRSRCRVIEFGRPTEEDKISMMKKMI---HRMVEICKNENIEIADMKVV 193 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,017,110 Number of Sequences: 14420 Number of extensions: 852505 Number of successful extensions: 2752 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 2192 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2749 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3585427737 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig894 (7554 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_835600.1|putative glycosyltransferases 35 0.15 >ref|NP_835600.1|putative glycosyltransferases Length = 484 Score = 34.7 bits (78), Expect = 0.15 Identities = 16/36 (44%), Positives = 23/36 (63%) Frame = +2 Query: 6674 DIAVFPSLYEPFGIVALEAFAAGCPVIVSNTGGLAE 6781 D+ + S E FGI +LEA G PV+ + TGG+A+ Sbjct: 304 DVVLQLSSNEGFGIASLEASLCGAPVVATMTGGIAD 339 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,857,862 Number of Sequences: 14420 Number of extensions: 929230 Number of successful extensions: 2755 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 2262 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2754 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3703561214 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig895 (5226 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_077227.1|Hypothetical protein 34 0.14 >ref|YP_077227.1|Hypothetical protein Length = 2308 Score = 34.3 bits (77), Expect = 0.14 Identities = 26/139 (18%), Positives = 57/139 (41%), Gaps = 11/139 (7%) Frame = -1 Query: 4059 QLEKILETTLDLKADFLIARQY-----------DYDLIELARHNQRLDSIVERKHSAAIT 3913 ++ KI TT+DL + L+AR Y D + L Q L++ + + Sbjct: 935 KMHKIANTTVDLYTNILVARAYSSITQLPNVSTDQQIQALQNAKQALENAKQDAQTLQSL 994 Query: 3912 NVVTGLHELATFDADVPELVSHRQAMARLLEQYQTTVNQIKDQIEQRQRTDGIEQELRDA 3733 + ++ ++ + ++ Q + +Q Q + QI+DQ++ Q + + L + Sbjct: 995 GINVNPSQIQKSVDNINQSINEIQTVHDYSQQLQNILKQIQDQLQTPQTAESLTSNLMNL 1054 Query: 3732 RYKLWQHLERSPADFRELG 3676 + Q + A ++ G Sbjct: 1055 SSQGLQIINNIIATYQRYG 1073 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,369,251 Number of Sequences: 14420 Number of extensions: 576573 Number of successful extensions: 1551 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1394 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1551 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2563387240 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig896 (7221 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_006619.1|Gp39 44 2e-04 ref|NP_046936.1|gp41 40 0.003 >ref|YP_006619.1|Gp39 Length = 202 Score = 43.9 bits (102), Expect = 2e-04 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 11/182 (6%) Frame = -1 Query: 6873 WREVPYTVIDVETTGLDTRHDALIAVGAVNIENGRVLLKQTWYSLIKPPPDREPSVESIR 6694 W + +ID ETTGL D +I + +N+ G +LL SL+KP P E+ + Sbjct: 16 WLRSDHVIIDTETTGL-MDFDEIIEITIINM-RGEILLN----SLVKPSRPIPP--EATK 67 Query: 6693 VHHLTPAELQNAPPAEEVLAELLRRIAGRVLVVHVAQVDVR-FINAALKP-FGGKLRRPI 6520 ++H+T + +AP +V +L+ I + + D R + + LK F L+ Sbjct: 68 INHITNEMVADAPTWSDVFPAVLKIIWKYKWLAWNSSFDARLMVQSCLKTWFFDDLKPHR 127 Query: 6519 LDTARLAL-TLHMNAR-----WLGEQPHDMPDPAIELRGLATAL---GLPVYAQHNALND 6367 + + +A+ T H++A+ W GE D + + LATA G+ H AL D Sbjct: 128 ITSIIMAIETRHIDAKAVYDQWYGE--FDEKRKNFKRQSLATAAARHGVSTAGAHRALAD 185 Query: 6366 AV 6361 + Sbjct: 186 CL 187 >ref|NP_046936.1|gp41 Length = 304 Score = 40.0 bits (92), Expect = 0.003 Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 10/179 (5%) Frame = -1 Query: 6873 WREVPYTVIDVETTGLDTRHDALIAVGAVNIENGRVLLKQTWYSLIKPPPDREPSVESIR 6694 W + Y VID ETTGL + +I + +N+ G VLL +L+KP P V I Sbjct: 16 WLKSDYVVIDTETTGLG-EYAEIIEIAIINM-RGEVLLD----TLVKPTKPIPPEVTEI- 68 Query: 6693 VHHLTPAELQNAPPAEEVLAELLRRIAGRVLVVHVAQVDVRFINAAL--KPFGGKLRRPI 6520 +H+T + +AP +V ++L I+ + + D R + F K + Sbjct: 69 -NHITNEMVASAPAWCDVFPKVLAIISKHKWLAWNSGFDARMLEQTCLNTIFLNKNAYYV 127 Query: 6519 LDTARLALTLHMNAR-----WLGEQPHDMPDPAIELRGLATAL---GLPVYAQHNALND 6367 T H++A+ W GE +D A + + L A G+ + H AL D Sbjct: 128 TAMVSRIHTSHIDAKAVYDTWYGE--YDAKHQAFKRQSLTIAAARHGVLLEGAHRALAD 184 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,235,049 Number of Sequences: 14420 Number of extensions: 912080 Number of successful extensions: 2667 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 2173 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2665 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3533264903 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig897 (5202 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542264.1|unknown 33 0.40 >ref|NP_542264.1|unknown Length = 185 Score = 32.7 bits (73), Expect = 0.40 Identities = 41/156 (26%), Positives = 56/156 (35%), Gaps = 17/156 (10%) Frame = -2 Query: 4454 RGHISAHGRLRYAHPQPLPRLRQLCQCHPARSPTSLTDPGHRGRQRWPTQTMASLPLRRH 4275 RG A R + HPQ PR LC HP +QR+ +++A L RH Sbjct: 34 RGRWHASSRPAFNHPQRGPRQEGLCSPHPEL------------QQRF-YRSVALLHGGRH 80 Query: 4274 RSGHWQRR*RHRCTGHQRWAGRNQ---PSVPGRYRYSIGRLPRHHLQSGR--PTPEPGV- 4113 RS R H ++ R + P +P R G PR R T E G+ Sbjct: 81 RSAVCSRFRSHDADPVEQIGIRGRGTVPPLPNRRDAKDGAFPRGSAAKSRYPATREMGLH 140 Query: 4112 -----------ECATSPASSSEHPAPTSLLSRRMQP 4038 C+ P+S + L RR+ P Sbjct: 141 QAAVRSIREGSHCSRRPSSGCSEGGSLTCLCRRLPP 176 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,705,609 Number of Sequences: 14420 Number of extensions: 596386 Number of successful extensions: 1609 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1412 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1609 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2550882912 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig898 (5412 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase 46 5e-05 ref|NP_051006.1|P45 37 0.029 >ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase Length = 320 Score = 45.8 bits (107), Expect = 5e-05 Identities = 80/314 (25%), Positives = 132/314 (42%), Gaps = 9/314 (2%) Frame = +2 Query: 380 ILITGSSGMIGTNLGLRLIEAGHQVFGVDRRVNPWTDRIPTLLQDLAIPQRDFRAGIGGA 559 ILITG +G IG+ L RL +V V + + + + + + + + D Sbjct: 2 ILITGCTGFIGSQLLKRL--NNDKVVCVANKDHFSNNIVDSAAEYVFVDLTDREKVRDLL 59 Query: 560 PYPPCDLVVHLAANAKVYELVTEPHRALENINITYNVLEYCRHHEIPIIFASSREVYGDI 739 DLV++LA+ V L E + N I YN+ E P+I AS+ EVY Sbjct: 60 RKVKPDLVINLASKTPV-RLSYEDTSFMNNAIIAYNIAMA----EAPLIHASTAEVYPYT 114 Query: 740 ---HRYMTEETRADFSFTESPYSASKIAGEALIYAYARCYGLRYIVFRFSNVYGRFDNDL 910 H Y EE + SPY+ SKIA E L+ + I+ R N GR + L Sbjct: 115 PYPHYYKEEEV---YRTPTSPYAVSKIASEMLLAGRKE----KTIILRPINTIGRPISRL 167 Query: 911 ---ARMERVIPLFIHRISRGEPVTVYGAD-KVLDFTYIDDCVDGIMCGINRLFRGE-VYN 1075 AR + +S + + G + Y +D V+ + I L + E VYN Sbjct: 168 PEEARGYFFEKTVLAMLSGAKEIHYDGHPLSSRQWMYWEDHVNAYLHAIKNLDKMEGVYN 227 Query: 1076 RTINLA-YGEGNTLIRVAELIGEAFGRQPEIIVQPAKRVGEVTYYVADIRQARELLGFNP 1252 +++ + Y TL ++ + G + +I R E Y + D + + GF+ Sbjct: 228 VSVHYSVYNHVLTLSETVSIVAKELGWEGKISWMENPRPVEPNYLLLDSTKIYK-TGFSV 286 Query: 1253 QVPLAEGINRAVAW 1294 + P+ I++A+ + Sbjct: 287 ENPIM-AIHKAIKY 299 >ref|NP_051006.1|P45 Length = 993 Score = 36.6 bits (83), Expect = 0.029 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 2/106 (1%) Frame = +1 Query: 2980 LDVSRLDAGQFDLQYQQVNLVGLAQQVIDQQRPNAGQRDLLLEAESAELMVTCDAMRIRQ 3159 +DV + ++ +Q L + QQ+ D NA QRD LL+ ++ +T M+ Sbjct: 205 MDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQHIASAFGITLPDMQAST 264 Query: 3160 VLTNLISNAIKYSPP--DSVISVRLRSATLLNNNAPAVLISVSDQG 3291 + + I PP ++SVRL+S T + A+L SVS G Sbjct: 265 LQRRINDPDI---PPALRELLSVRLQSCTTSTSKYKALLKSVSADG 307 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,900,042 Number of Sequences: 14420 Number of extensions: 595196 Number of successful extensions: 1776 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1512 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1773 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2660295782 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig899 (6790 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 36 0.061 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 35.8 bits (81), Expect = 0.061 Identities = 47/166 (28%), Positives = 59/166 (35%), Gaps = 15/166 (9%) Frame = -2 Query: 6120 QPLPHRGPCSPRQ*SPGHCSGLLPQQWPVPA*PDRHS*RYPNQRRFHQRQAASGAQHQPG 5941 +P PH GP R SP H P + P+ P R+P R R A PG Sbjct: 36 RPHPHLGPARDR--SPDHPEPDHPCR-RAPSRPAAGPRRHPPVARTRPRTRAPECAPDPG 92 Query: 5940 *QYHLRQS*RPAIYLQSP---PALPAHREPGSAWR-------R*TIHLHSSTASAESRCT 5791 PA++ +P PA PA E A R R HL + +R Sbjct: 93 ----------PAVHPAAPGCAPAAPAAPEYAPALRPRAPECDRGAHHLRTRAPRTRTRAV 142 Query: 5790 PHGRVAQPRPHYRYRLRLSCAALPHPRRH-----GAALHQDYDNRR 5668 P G A+ R R R P PRR G +H+ RR Sbjct: 143 PLGPGARVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARR 188 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,319,372 Number of Sequences: 14420 Number of extensions: 787634 Number of successful extensions: 2296 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1894 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2295 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3312339959 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig900 (5222 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542333.1|unknown 33 0.40 >ref|NP_542333.1|unknown Length = 136 Score = 32.7 bits (73), Expect = 0.40 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Frame = +2 Query: 3152 WRLVCDRHPPVLPFAARQSCTRPQQQYNHNGSCS--KKVVQPNQLRATTGSYTTPTAR-T 3322 WR DRH P+LP+ R++ TRP + + S + + +LR G + AR T Sbjct: 51 WRQADDRHRPILPWRVRRAITRPVRPAAEDNSSPFYRPIRGGRRLRPQQGLHLHRIARST 110 Query: 3323 S*RLQIAIAP*LQCTAHISKRSTIG 3397 RL ++ P +R+ G Sbjct: 111 LLRLHASVWPRQSLRGRADRRTDRG 135 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,366,209 Number of Sequences: 14420 Number of extensions: 603143 Number of successful extensions: 1547 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1389 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1547 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2561824199 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig901 (6516 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_024488.1|putative glycerophosphoryl diester phosphodieste... 71 1e-12 ref|YP_024843.1|Pas57 36 0.059 >ref|YP_024488.1|putative glycerophosphoryl diester phosphodiesterase Length = 848 Score = 71.2 bits (173), Expect = 1e-12 Identities = 61/239 (25%), Positives = 102/239 (42%), Gaps = 15/239 (6%) Frame = +3 Query: 1092 LIIAHRGASADAPENTLAAFELARHQQADMIELDLQLTADGEIVVFHDDTTARWNGRDEP 1271 ++I HRGA+ E+T+ +++A + AD IELDLQLT D +++ HD T R Sbjct: 617 MLIGHRGATGYTDEHTIKGYQMALDKGADYIELDLQLTKDNKLLCMHDSTIDRTTTGTGK 676 Query: 1272 VARLTLA--ELRHLDIGGERVPTLAETLDWARSAAMPLNLELKRP---GMAARCVQLVRE 1436 V +TL+ + + GE +P+L + L+ + +E KRP M + ++ Sbjct: 677 VGDMTLSYIQTNFTSLNGEPIPSLDDVLNHF-GTKVKYYIETKRPFDANMDRELLTQLKA 735 Query: 1437 FGMVD------QVIVSSFYEQALHELRATDPVIARGYLMGIRTYRPDIRLREFWPFLALR 1598 G++ QVI+ SF ++L + I YL F Sbjct: 736 KGLIGIGSERFQVIIQSFARESLINIHNQFSNIPLAYLTS--------------TFSESE 781 Query: 1599 RVEATAWHPYHGLPGLDWILPKV----RRAGYKVNVWTVDDPVRLRDLAALGASGLITN 1763 + ++ Y P I ++ G KV+ WTV+ ++ L +G G TN Sbjct: 782 MDDCLSYGFYAIAPKYTTITKELVDLAHSKGLKVHAWTVNTKEEMQSLIQMGVDGFFTN 840 >ref|YP_024843.1|Pas57 Length = 305 Score = 35.8 bits (81), Expect = 0.059 Identities = 29/90 (32%), Positives = 40/90 (44%) Frame = -3 Query: 3871 PPLTTSSATWNWGQ*IVGSTTTVMCSASASWYTSTITTSAPSTVPSCRR*CKTVPVGSSS 3692 PP T++SA+ ++T+ SAS S ST +++ ST S GS+S Sbjct: 190 PPSTSTSAS-------ASASTSASASASTSASASTSASASASTSASASSSASPSTTGSAS 242 Query: 3691 PSTNRLRGAARARSKSFLSTTAAPVFSTLP 3602 PST STTAAP +T P Sbjct: 243 PSTT-------------TSTTAAPGITTTP 259 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,566,449 Number of Sequences: 14420 Number of extensions: 760851 Number of successful extensions: 2297 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1821 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2292 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 3204096849 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig902 (6133 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,460,055 Number of Sequences: 14420 Number of extensions: 662978 Number of successful extensions: 1976 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1676 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1974 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 3005873361 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig903 (5164 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_932377.1|DNA helicase 33 0.30 >ref|NP_932377.1|DNA helicase Length = 439 Score = 33.1 bits (74), Expect = 0.30 Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Frame = +2 Query: 206 PAGYGKTTLLAQWADQLIQTGAQVAWLGLEATD-----QEPALLLAYLIGAIRRVIPSLG 370 PAG GKTTL D+L QTG Q L + AL AY I ++ ++ PS Sbjct: 33 PAGTGKTTLTKFLLDRLFQTGQQGIVLAAPTHQAKKELSKHALRKAYTIQSLLKINPSTL 92 Query: 371 DQASRILQSISSLDRNWPLVAGALLSDIQRELQSLTVLILDDVHLVADGPITADLLGYLL 550 ++ ++I + + D + VLI D+V T L L+ Sbjct: 93 EE-NQIFEQKGTPD-----------------FSKIRVLICDEVSF-----YTRKLFNILM 129 Query: 551 RAAPPHLHIV 580 + P H I+ Sbjct: 130 KTVPSHCVII 139 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,477,069 Number of Sequences: 14420 Number of extensions: 589061 Number of successful extensions: 1684 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1455 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1683 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2530563379 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig904 (4833 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_064745.1|gp7 66 4e-11 ref|NP_996646.1|hypothetical protein predicted by GeneMark 43 3e-04 ref|NP_996598.1|hypothetical protein predicted by GeneMark 43 4e-04 ref|NP_817395.1|gp57 37 0.026 ref|NP_943810.1|gp32 34 0.17 ref|NP_542279.1|unknown 33 0.28 ref|YP_164322.1|hypothetical protein 33 0.28 ref|NP_813727.1|gp12 33 0.28 >ref|NP_064745.1|gp7 Length = 540 Score = 65.9 bits (159), Expect = 4e-11 Identities = 73/217 (33%), Positives = 103/217 (47%), Gaps = 6/217 (2%) Frame = +2 Query: 3998 SAIGAFSAGADCNQEMASAETSAVNQSGVSTGAVEACCSQSGTSLPAA-GADSSCNHTGT 4174 +A A +AGA ASA SA + + +T A +A S S ++ A S N + Sbjct: 115 AATSATNAGASETAASASATASATSATNSATSASQAATSASAAAVSEGNAATSETNAANS 174 Query: 4175 SLPAAGAASSRNHXXXXXXXXXXXXXRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRN 4354 + A+G+AS+ + S+ A AA+S ++A TS A AA+S+ Sbjct: 175 ATSASGSASTAT--------------TQASAASVSATNAATSASNAATS--ATNAAASQA 218 Query: 4355 HAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTS-----LPAAGAASSRNHAGTSLP 4519 A TS AA+S + TS A AA+S +A TS A AA+S + A TS Sbjct: 219 AAATS--ETNAAASESTVTTS--ATNAATSEANAATSASTATTQATNAATSASTASTS-- 272 Query: 4520 AAGAASSRNHAGTSLPAAGAASSCNHAGTSLPAAGAA 4630 A AA+S +A +S A+ AASS A S AA AA Sbjct: 273 ATNAATSETNAASS--ASSAASSATSAQASKDAALAA 307 Score = 38.1 bits (87), Expect = 0.009 Identities = 52/164 (31%), Positives = 70/164 (42%) Frame = +2 Query: 3995 GSAIGAFSAGADCNQEMASAETSAVNQSGVSTGAVEACCSQSGTSLPAAGADSSCNHTGT 4174 GSA A + + + +A TSA S +T A A SQ+ + A +S + T Sbjct: 180 GSASTATTQASAASVSATNAATSA---SNAATSATNAAASQAAAATSETNAAASESTVTT 236 Query: 4175 SLPAAGAASSRNHXXXXXXXXXXXXXRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRN 4354 S A AA+S A AA+S + A T A AA+S + Sbjct: 237 S--ATNAATSE-------------------------ANAATSASTATTQ--ATNAATSAS 267 Query: 4355 HAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAA 4486 A TS A AA+S +A +S A+ AASS A S AA AA Sbjct: 268 TASTS--ATNAATSETNAASS--ASSAASSATSAQASKDAALAA 307 >ref|NP_996646.1|hypothetical protein predicted by GeneMark Length = 357 Score = 43.1 bits (100), Expect = 3e-04 Identities = 28/159 (17%), Positives = 69/159 (43%), Gaps = 1/159 (0%) Frame = +2 Query: 4328 AAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAG 4507 A G A++ + +G A++ N+ GT+ ++ + GT+ ++ +G Sbjct: 150 ALGTATAGESGTATAGESGTATAGNY-GTATAGESGTATAGYRGTATAGESGTATAGESG 208 Query: 4508 TSLPAAGAASSRNHAGTSLPAAGAASSCNHAGTSLPA-AGAASSRNHAGTSLPAAGAASS 4684 T+ ++ + GT+ ++ + GT+ +G A++ N+ + G A++ Sbjct: 209 TATAGESGTATAGNYGTATAGESGTATAGYRGTATAGESGTATAGNYGTATAGNYGTATA 268 Query: 4685 RNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTS 4801 N+ GT+ ++ + GT+ ++ + GT+ Sbjct: 269 GNY-GTATAGESGTATAGYRGTATAGNYGTATAGNYGTA 306 Score = 42.4 bits (98), Expect = 5e-04 Identities = 23/158 (14%), Positives = 63/158 (39%) Frame = +2 Query: 4280 AAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAG 4459 A G A++ +GT+ ++ + GT+ ++ + GT+ ++ +G Sbjct: 150 ALGTATA-GESGTATAGESGTATAGNYGTATAGESGTATAGYRGTATAGESGTATAGESG 208 Query: 4460 TSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSCNHAGTSLPAAGAASSR 4639 T+ ++ + GT+ ++ + GT+ ++ + GT+ ++ Sbjct: 209 TATAGESGTATAGNYGTATAGESGTATAGYRGTATAGESGTATAGNYGTATAGNYGTATA 268 Query: 4640 NHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTS 4753 + GT+ ++ + GT+ ++ + GT+ Sbjct: 269 GNYGTATAGESGTATAGYRGTATAGNYGTATAGNYGTA 306 Score = 42.0 bits (97), Expect = 6e-04 Identities = 28/180 (15%), Positives = 70/180 (38%), Gaps = 1/180 (0%) Frame = +2 Query: 4265 GTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASS 4444 G+ AA + ++ G G + A ++ +GT+ ++ Sbjct: 112 GSRSDAAAYILAHEPKALNVAVIGLVREVGDGGVAEVGALGTATAGESGTATAGESGTAT 171 Query: 4445 RNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSCNHAGTSLPAAG 4624 + GT+ ++ + GT+ ++ +GT+ ++ + GT+ Sbjct: 172 AGNYGTATAGESGTATAGYRGTATAGESGTATAGESGTATAGESGTATAGNYGTATAGES 231 Query: 4625 AASSRNHAGTSLPA-AGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTS 4801 ++ + GT+ +G A++ N+ + G A++ N+ GT+ ++ + GT+ Sbjct: 232 GTATAGYRGTATAGESGTATAGNYGTATAGNYGTATAGNY-GTATAGESGTATAGYRGTA 290 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/148 (13%), Positives = 58/148 (39%) Frame = +2 Query: 4262 AGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAAS 4441 +GT+ ++ + GT+ ++ + GT+ ++ +GT+ + Sbjct: 159 SGTATAGESGTATAGNYGTATAGESGTATAGYRGTATAGESGTATAGESGTATAGESGTA 218 Query: 4442 SRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSCNHAGTSLPAA 4621 + + GT+ ++ + GT+ ++ + GT+ ++ + GT+ Sbjct: 219 TAGNYGTATAGESGTATAGYRGTATAGESGTATAGNYGTATAGNYGTATAGNYGTATAGE 278 Query: 4622 GAASSRNHAGTSLPAAGAASSRNHAGTS 4705 ++ + GT+ ++ + GT+ Sbjct: 279 SGTATAGYRGTATAGNYGTATAGNYGTA 306 Score = 37.4 bits (85), Expect = 0.015 Identities = 24/166 (14%), Positives = 64/166 (38%), Gaps = 1/166 (0%) Frame = +2 Query: 4286 GAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTS 4465 G + GT+ ++ +GT+ ++ +GT+ ++ +GT+ Sbjct: 143 GGVAEVGALGTATAGESGTATAGESGTATAGNYGTATAGESGTATAGYRGTATAGESGTA 202 Query: 4466 LPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSCNHAGTSLPAAGAASSRNH 4645 ++ +GT+ ++ +GT+ ++ +GT+ ++ + Sbjct: 203 TAGESGTATAGESGTATAGNYGTATAGESGTATAGYRGTATAGESGTATAGNYGTATAGN 262 Query: 4646 AGTSLPAAGAASSRNHAGTSLPA-AGAASSRNHAGTSLPAAGAASS 4780 GT+ ++ +GT+ G A++ N+ + G A++ Sbjct: 263 YGTATAGNYGTATAGESGTATAGYRGTATAGNYGTATAGNYGTATA 308 Score = 37.4 bits (85), Expect = 0.015 Identities = 24/166 (14%), Positives = 64/166 (38%), Gaps = 1/166 (0%) Frame = +2 Query: 4334 GAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTS 4513 G + GT+ ++ +GT+ ++ +GT+ ++ +GT+ Sbjct: 143 GGVAEVGALGTATAGESGTATAGESGTATAGNYGTATAGESGTATAGYRGTATAGESGTA 202 Query: 4514 LPAAGAASSRNHAGTSLPAAGAASSCNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNH 4693 ++ +GT+ ++ +GT+ ++ +GT+ ++ + Sbjct: 203 TAGESGTATAGESGTATAGNYGTATAGESGTATAGYRGTATAGESGTATAGNYGTATAGN 262 Query: 4694 AGTSLPAAGAASSRNHAGTSLPA-AGAASSRNHAGTSLPAAGAASS 4828 GT+ ++ +GT+ G A++ N+ + G A++ Sbjct: 263 YGTATAGNYGTATAGESGTATAGYRGTATAGNYGTATAGNYGTATA 308 Score = 35.8 bits (81), Expect = 0.044 Identities = 29/168 (17%), Positives = 67/168 (39%), Gaps = 3/168 (1%) Frame = +2 Query: 4067 VNQSGVS-TGAV-EACCSQSGTSLPAAGADSSCNHTGTSLPAAGAASSRNHXXXXXXXXX 4240 V GV+ GA+ A +SGT+ ++ + GT+ ++ + Sbjct: 140 VGDGGVAEVGALGTATAGESGTATAGESGTATAGNYGTATAGESGTATAGYRGTATAGES 199 Query: 4241 XXXXRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPA-AGAASSRNHAGTS 4417 +GT+ ++ + GT+ ++ + GT+ +G A++ N+ + Sbjct: 200 GTATAGESGTATAGESGTATAGNYGTATAGESGTATAGYRGTATAGESGTATAGNYGTAT 259 Query: 4418 LPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTS 4561 G A++ N+ GT+ ++ + GT+ ++ + GT+ Sbjct: 260 AGNYGTATAGNY-GTATAGESGTATAGYRGTATAGNYGTATAGNYGTA 306 Score = 35.0 bits (79), Expect = 0.075 Identities = 29/181 (16%), Positives = 72/181 (39%), Gaps = 2/181 (1%) Frame = +2 Query: 4121 GTSLPAAGADSSCNHTGTSLPA-AGAASSRNHXXXXXXXXXXXXXRNHAGTSLPAAGAAS 4297 G + A ++ +GT+ +G A++ N+ GT+ + Sbjct: 144 GVAEVGALGTATAGESGTATAGESGTATAGNY-----------------GTATAGESGTA 186 Query: 4298 SRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPA- 4474 + + GT+ ++ +GT+ ++ + GT+ ++ + GT+ Sbjct: 187 TAGYRGTATAGESGTATAGESGTATAGESGTATAGNYGTATAGESGTATAGYRGTATAGE 246 Query: 4475 AGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSCNHAGTSLPAAGAASSRNHAGT 4654 +G A++ N+ + G A++ N+ GT+ ++ + GT+ ++ + GT Sbjct: 247 SGTATAGNYGTATAGNYGTATAGNY-GTATAGESGTATAGYRGTATAGNYGTATAGNYGT 305 Query: 4655 S 4657 + Sbjct: 306 A 306 >ref|NP_996598.1|hypothetical protein predicted by GeneMark Length = 365 Score = 42.7 bits (99), Expect = 4e-04 Identities = 25/172 (14%), Positives = 66/172 (38%) Frame = +2 Query: 4286 GAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTS 4465 G + GT+ ++ + GT+ ++ + GT+ ++ + GT+ Sbjct: 143 GGVAEVGALGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTA 202 Query: 4466 LPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSCNHAGTSLPAAGAASSRNH 4645 ++ + GT+ ++ + GT+ ++ + GT+ ++ + Sbjct: 203 TAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGY 262 Query: 4646 AGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTS 4801 GT+ ++ + GT+ AG + + GT+ ++ +GT+ Sbjct: 263 RGTATAGESGTATAGYRGTA--TAGESGTATAGGTATAGESGTATAGESGTA 312 Score = 42.4 bits (98), Expect = 5e-04 Identities = 24/163 (14%), Positives = 64/163 (39%) Frame = +2 Query: 4265 GTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASS 4444 GT+ ++ + GT+ ++ + GT+ ++ + GT+ ++ Sbjct: 152 GTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTAT 211 Query: 4445 RNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSCNHAGTSLPAAG 4624 + GT+ ++ + GT+ ++ + GT+ ++ + GT+ Sbjct: 212 AGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGES 271 Query: 4625 AASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTS 4753 ++ + GT+ AG + + GT+ ++ +GT+ Sbjct: 272 GTATAGYRGTA--TAGESGTATAGGTATAGESGTATAGESGTA 312 Score = 40.0 bits (92), Expect = 0.002 Identities = 25/158 (15%), Positives = 65/158 (41%) Frame = +2 Query: 4280 AAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAG 4459 A G A++ + GT+ ++ + GT+ ++ + GT+ ++ + G Sbjct: 150 ALGTATA-GYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRG 208 Query: 4460 TSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSCNHAGTSLPAAGAASSR 4639 T+ ++ + GT+ ++ + GT+ ++ + GT+ ++ Sbjct: 209 TATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATA 268 Query: 4640 NHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTS 4753 +GT+ ++ +GT+ AG ++ +GT+ Sbjct: 269 GESGTATAGYRGTATAGESGTA--TAGGTATAGESGTA 304 Score = 39.7 bits (91), Expect = 0.003 Identities = 22/149 (14%), Positives = 59/149 (39%) Frame = +2 Query: 4259 HAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAA 4438 + GT+ ++ + GT+ ++ + GT+ ++ + GT+ Sbjct: 166 YRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGT 225 Query: 4439 SSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSCNHAGTSLPA 4618 ++ + GT+ ++ + GT+ ++ + GT+ ++ + GT+ Sbjct: 226 ATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGESGTATAGYRGTA--T 283 Query: 4619 AGAASSRNHAGTSLPAAGAASSRNHAGTS 4705 AG + + GT+ ++ +GT+ Sbjct: 284 AGESGTATAGGTATAGESGTATAGESGTA 312 Score = 38.9 bits (89), Expect = 0.005 Identities = 22/149 (14%), Positives = 60/149 (40%) Frame = +2 Query: 4259 HAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAA 4438 + GT+ ++ + GT+ ++ + GT+ ++ + GT+ Sbjct: 158 YRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGT 217 Query: 4439 SSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSCNHAGTSLPA 4618 ++ + GT+ ++ + GT+ ++ + GT+ ++ +GT+ Sbjct: 218 ATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGESGTATAG 277 Query: 4619 AGAASSRNHAGTSLPAAGAASSRNHAGTS 4705 ++ +GT+ AG ++ +GT+ Sbjct: 278 YRGTATAGESGTA--TAGGTATAGESGTA 304 Score = 38.1 bits (87), Expect = 0.009 Identities = 27/188 (14%), Positives = 70/188 (37%) Frame = +2 Query: 4265 GTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASS 4444 G+ AA + ++ G G + A ++ + GT+ ++ Sbjct: 112 GSRSDAAAYILAHEPKALNVAVIGLVREVGDGGVAEVGALGTATAGYRGTATAGYRGTAT 171 Query: 4445 RNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSCNHAGTSLPAAG 4624 + GT+ ++ + GT+ ++ + GT+ ++ + GT+ Sbjct: 172 AGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYR 231 Query: 4625 AASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSL 4804 ++ + GT+ ++ + GT+ ++ +GT+ ++ +GT+ Sbjct: 232 GTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGESGTATAGYRGTATAGESGTA- 290 Query: 4805 PAAGAASS 4828 A G A++ Sbjct: 291 TAGGTATA 298 Score = 33.1 bits (74), Expect = 0.28 Identities = 25/177 (14%), Positives = 62/177 (35%), Gaps = 2/177 (1%) Frame = +2 Query: 4037 QEMASAETSAVNQSGVSTGAVE--ACCSQSGTSLPAAGADSSCNHTGTSLPAAGAASSRN 4210 +E+ + V G +T A GT+ ++ + GT+ ++ Sbjct: 138 REVGDGGVAEVGALGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAG 197 Query: 4211 HXXXXXXXXXXXXXRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAA 4390 + + GT+ ++ + GT+ ++ + GT+ Sbjct: 198 YRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGT 257 Query: 4391 SSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTS 4561 ++ + GT+ ++ + GT+ AG + + GT+ ++ +GT+ Sbjct: 258 ATAGYRGTATAGESGTATAGYRGTA--TAGESGTATAGGTATAGESGTATAGESGTA 312 >ref|NP_817395.1|gp57 Length = 287 Score = 36.6 bits (83), Expect = 0.026 Identities = 57/166 (34%), Positives = 67/166 (40%), Gaps = 1/166 (0%) Frame = -1 Query: 4704 DVPAWLREEAAPAAGSDVPAWLREEAAPAAGSDVP-AWLQEEAAPAAGSDVPAWLREEAA 4528 D P W A AG+ + + AA +VP AW A AAGS AW A Sbjct: 105 DSPEWGVVRFADEAGAVAIREIADLHRRAAAGEVPFAW--SAAWSAAGS--AAW--SAAW 158 Query: 4527 PAAGSDVPAWLREEAAPAAGSDVPAWLREEAAPAAGSDVPAWLREEAAPAAGSDVPAWLR 4348 AAGS R A AAGS AW A AA S AW E+A + + AW Sbjct: 159 SAAGSAA----RSAAGSAAGS--AAW--SAAGSAAWS--AAWSAAESAAGSAAWSAAW-- 206 Query: 4347 EEAAPAAGSDVPAWLREEAAPAAGSDVPAWLREEAAPAAGGDVPAW 4210 AAGS + A AAGS + R A AA + AW Sbjct: 207 ----SAAGSAAWSAAWSAAGSAAGSAAESAARSAAGSAA--ESAAW 246 Score = 34.7 bits (78), Expect = 0.098 Identities = 50/138 (36%), Positives = 58/138 (42%), Gaps = 1/138 (0%) Frame = -1 Query: 4812 AAGSDVP-AWLREEAAPAAGSDVPAWLREEAAPAAGSDVPAWLREEAAPAAGSDVPAWLR 4636 AA +VP AW A AAGS AW A AAGS R A AAGS AW Sbjct: 133 AAAGEVPFAW--SAAWSAAGS--AAW--SAAWSAAGSAA----RSAAGSAAGS--AAW-- 178 Query: 4635 EEAAPAAGSDVPAWLQEEAAPAAGSDVPAWLREEAAPAAGSDVPAWLREEAAPAAGSDVP 4456 AAGS AW +A + + AW +A + + AW A AAGS Sbjct: 179 ----SAAGS--AAWSAAWSAAESAAGSAAWSAAWSAAGSAAWSAAW--SAAGSAAGSAAE 230 Query: 4455 AWLREEAAPAAGSDVPAW 4402 + R A AA S AW Sbjct: 231 SAARSAAGSAAES--AAW 246 >ref|NP_943810.1|gp32 Length = 448 Score = 33.9 bits (76), Expect = 0.17 Identities = 42/156 (26%), Positives = 56/156 (35%), Gaps = 3/156 (1%) Frame = +2 Query: 4358 AGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAAS 4537 AGT + R AG + G A AGT + A GT +P +GA + Sbjct: 294 AGTKIDIVMFPGGR--AGKNGATFGGAGRGGLAGTPVTATLTV------GTDIPVSGALT 345 Query: 4538 SRNHAG-TSLPAAGAASSCNHAGTSLPAAGAASSRNHAGT--SLPAAGAASSRNHAGTSL 4708 AG S AAG S+C G + P A +S G ++ G G+S Sbjct: 346 GVVGAGGASNGAAGGVSTCTTVGLTAPVNNADASGQDGGNAPNVTLNGITYPGGRGGSS- 404 Query: 4709 PAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAG 4816 G +SS G G AG + A G Sbjct: 405 ---GTSSSAGEDGQDPGGGGEGGGSLIAGLAGGAGG 437 >ref|NP_542279.1|unknown Length = 400 Score = 33.1 bits (74), Expect = 0.28 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 5/123 (4%) Frame = +2 Query: 4448 NHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPA-----AGAASSCNHAGTSL 4612 N+ + + AA +R T+ AA+ R +A + AG +S + AGT Sbjct: 93 NYGSEARQSEAAAEARADVSTAAANQRAATERANASMGITPGSGAHAGVQASADLAGTVA 152 Query: 4613 PAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHA 4792 A A ++R G A + + G LPA A AG S+ A A S N A Sbjct: 153 EAGAANTARQ--GVRDKALALKADVVNMGRGLPAQAAGG----AGGSVAAGATALSGNQA 206 Query: 4793 GTS 4801 S Sbjct: 207 TNS 209 Score = 32.7 bits (73), Expect = 0.37 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 5/123 (4%) Frame = +2 Query: 4304 NHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPA-----AGAASSRNHAGTSL 4468 N+ + + AA +R T+ AA+ R +A + AG +S + AGT Sbjct: 93 NYGSEARQSEAAAEARADVSTAAANQRAATERANASMGITPGSGAHAGVQASADLAGTVA 152 Query: 4469 PAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSCNHAGTSLPAAGAASSRNHA 4648 A A ++R G A + + G LPA A AG S+ A A S N A Sbjct: 153 EAGAANTARQ--GVRDKALALKADVVNMGRGLPAQAAGG----AGGSVAAGATALSGNQA 206 Query: 4649 GTS 4657 S Sbjct: 207 TNS 209 Score = 32.3 bits (72), Expect = 0.49 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 5/123 (4%) Frame = +2 Query: 4256 NHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPA-----AGAASSRNHAGTSL 4420 N+ + + AA +R T+ AA+ R +A + AG +S + AGT Sbjct: 93 NYGSEARQSEAAAEARADVSTAAANQRAATERANASMGITPGSGAHAGVQASADLAGTVA 152 Query: 4421 PAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSCNHA 4600 A A ++R G A + + G LPA A AG S+ A A S N A Sbjct: 153 EAGAANTARQ--GVRDKALALKADVVNMGRGLPAQAAGG----AGGSVAAGATALSGNQA 206 Query: 4601 GTS 4609 S Sbjct: 207 TNS 209 >ref|YP_164322.1|hypothetical protein Length = 675 Score = 33.1 bits (74), Expect = 0.28 Identities = 30/110 (27%), Positives = 46/110 (41%) Frame = +2 Query: 4457 GTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSCNHAGTSLPAAGAASS 4636 G + P++ AA R G LPAAGA + GA S + GT++P+AG Sbjct: 322 GAAAPSSSAAPGR---GQVLPAAGAPT------------GALESAANTGTAMPSAG---- 362 Query: 4637 RNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRNHAGTSLPAAGAASSRN 4786 G+ LP + +GT++ + A T G S++N Sbjct: 363 ----GSDLPNNVTRVGNSFSGTTIRPGYTVNGEAQA-TGFAPGGQRSAQN 407 >ref|NP_813727.1|gp12 Length = 386 Score = 33.1 bits (74), Expect = 0.28 Identities = 26/77 (33%), Positives = 37/77 (48%) Frame = -2 Query: 605 RVQVRHGELIRLPLSVGRYAQVKVKPAATVRVGQAAPGEAVESDPAEVHGSLLGLIIDAR 426 R +V HG + +GRYA V++ P PGE + P +L+ L+ DA Sbjct: 194 RPKVGHGAALEALSVLGRYAGVRITP--------GTPGEFAANLP-----TLVDLLEDA- 239 Query: 425 GRPLTLPADGAERRRLL 375 +TLP D ERR +L Sbjct: 240 ---VTLPRDAEERRYVL 253 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,200,620 Number of Sequences: 14420 Number of extensions: 510493 Number of successful extensions: 1966 Number of sequences better than 0.5: 8 Number of HSP's better than 0.5 without gapping: 1197 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1824 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2381966110 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig905 (5357 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,401,095 Number of Sequences: 14420 Number of extensions: 605514 Number of successful extensions: 1699 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1462 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1699 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2632161044 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig906 (7199 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_943809.1|gp31 35 0.085 >ref|NP_943809.1|gp31 Length = 751 Score = 35.4 bits (80), Expect = 0.085 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Frame = +1 Query: 2632 SMRIPILNEQQFRDV-----VRGSGAHEVLVDGVPVWQLNNPLSAEQRSRYRSPIDYTTH 2796 S R+P+L R + GS +E + G P W ++ + + + D TTH Sbjct: 136 SSRLPLLPLSHIRPISPNLLTDGSFDYEETLSGFPDWDWDDTVGRNKPGSAYTVADGTTH 195 Query: 2797 ALHSLIERLDHNDRLGLIACASDAIVLASG 2886 +HS + +DRL + A A ++ASG Sbjct: 196 TIHSNSIEVGPDDRLNVEVYARWAGLVASG 225 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,118,011 Number of Sequences: 14420 Number of extensions: 820794 Number of successful extensions: 2505 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 2016 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2502 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3522525496 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig907 (3068 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,487,959 Number of Sequences: 14420 Number of extensions: 291443 Number of successful extensions: 836 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 784 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 836 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1499166925 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig908 (6726 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 56 6e-08 >ref|NP_046572.1|ABC transporter Length = 705 Score = 55.8 bits (133), Expect = 6e-08 Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 13/168 (7%) Frame = +3 Query: 4422 LHDITFTIEAGEIFGFLGPSGAGKSTTQKILIRLLRGFRGHVTILGRDLRDWDDNLYEQV 4601 + DI ++ + +G SG GKST K L +L + + + G D+ +D + Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 4602 GVCFELPNHYGKLTAIENLRYFARLYSRPTLAPETVLDMVG-------------LSEDGH 4742 V + K T ENL ++ + + ++ LSE+G Sbjct: 559 IVYIDENPFLFKGTIKENL-CMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG- 616 Query: 4743 LLASQYSKGMKIRLNLARALLHQPQLLFLDEPTAGLDPVNARRIKDLI 4886 S S G K RL LARA+LHQPQ+L LDE + +DP N + I + + Sbjct: 617 ---SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETL 661 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,134,333 Number of Sequences: 14420 Number of extensions: 793293 Number of successful extensions: 2407 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1975 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2404 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3280121738 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig909 (7445 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542296.1|unknown 33 0.44 >ref|NP_542296.1|unknown Length = 111 Score = 33.1 bits (74), Expect = 0.44 Identities = 34/107 (31%), Positives = 42/107 (39%), Gaps = 14/107 (13%) Frame = +2 Query: 146 MPSGRPAATRRPLVAQRKAD-----SLIRKRPAHLTAPDAPS-PPRPSERQPARTTGWAH 307 MP GRP RR AQR + + RP LT P+ P R AR Sbjct: 1 MPLGRPCRIRRCGAAQRPLSPACSLASVPTRPGALTTTTLPAFRPIGPRRCRARRASAIT 60 Query: 308 RQTVSAP-RP-------VAYSQTTASSACSYRHHFRPAHRVSGRRQT 424 T+ +P RP + S T+ A + H P VS RRQT Sbjct: 61 CSTIPSPGRPGPRRRPRHSASPATSRGAARPKSHLTPCSAVSRRRQT 107 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,192,571 Number of Sequences: 14420 Number of extensions: 927873 Number of successful extensions: 2971 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 2347 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2969 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3648329978 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig910 (6526 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,618,328 Number of Sequences: 14420 Number of extensions: 827166 Number of successful extensions: 2422 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 2030 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2422 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 3208742712 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig911 (5872 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 35 0.090 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 35.0 bits (79), Expect = 0.090 Identities = 36/103 (34%), Positives = 39/103 (37%), Gaps = 13/103 (12%) Frame = +3 Query: 1899 DALRLRRPVPLHGTDEAP-AQHEPDRVRVSGLRPVTARAGRLDDGPGHRE-----SRAPG 2060 DA RLRR P H AP + P R RP D P H E RAP Sbjct: 4 DARRLRRARPPHTRTPAPRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRAPS 63 Query: 2061 EPVL--RQQPGPV-----RARAKLLTPHSRPVVQPPDAQCAPS 2168 P R+ P PV R RA P P V P CAP+ Sbjct: 64 RPAAGPRRHP-PVARTRPRTRAPECAPDPGPAVHPAAPGCAPA 105 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,056,525 Number of Sequences: 14420 Number of extensions: 744734 Number of successful extensions: 2180 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1845 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2177 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2871143334 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig912 (6921 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_700397.1|tail protein 40 0.003 >ref|NP_700397.1|tail protein Length = 520 Score = 40.4 bits (93), Expect = 0.003 Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 11/142 (7%) Frame = +1 Query: 4879 EQPNVSMAGDILFGGHWEAGFALRILDRSDARGSFT---NKITSQRLPTVATSHDNPGTC 5049 + + M+ D+L G AG A ++ S+ + T N PTV D+ G Sbjct: 341 DNSGLHMSVDVLTNGAVRAGNAKKLSLTSNNNSTMTATFNLWGDANRPTVIELDDDQGWH 400 Query: 5050 SFSTSH------YCASGLYNTRPYDFGFYIYYNQGTVYDRYWSE--YATWVVSNENLYFR 5205 +S + + +G G IY N G ++ W +TW+ N NL Sbjct: 401 LYSQRNPDGSIVFTVNGDITANTLRAGGAIYQNNGDIFGSLWGNGWLSTWI--NNNLVLD 458 Query: 5206 SADGAIVALTAGNPTSGWNNTP 5271 GA ++T N W NTP Sbjct: 459 VQLGAGTSVTTWNNAGSWPNTP 480 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,227,857 Number of Sequences: 14420 Number of extensions: 890124 Number of successful extensions: 2694 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 2176 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2693 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3379844803 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig913 (8349 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958203.1|gene 27 protein 109 4e-24 ref|NP_944246.1|putative single-strand DNA binding protein 99 6e-21 ref|YP_164279.1|single-stranded DNA-binding protein 97 4e-20 ref|YP_006485.1|Ssb 96 6e-20 ref|NP_438126.1|single-strand binding protein 80 5e-15 ref|NP_795558.1|putative single-strand DNA-binding protein 80 5e-15 ref|NP_463525.1|putative SSB protein 79 6e-15 ref|NP_112675.1|SSB 77 3e-14 ref|NP_038310.1|ORF9 77 4e-14 ref|NP_076587.1|SSB protein 75 1e-13 ref|NP_108692.1|single-strand binding protein 74 2e-13 ref|NP_150144.1|putative SSB protein 71 2e-12 ref|NP_835537.1|single-strand DNA-binding protein 71 2e-12 ref|NP_058484.1|ssDNA binding protein 71 2e-12 ref|NP_612868.1|putative single stranded DNA binding protein 70 3e-12 ref|NP_076649.1|SSB 70 5e-12 ref|NP_663648.1|putative single stranded binding protein 67 3e-11 ref|NP_061608.1|single strand DNA binding protein 67 4e-11 ref|NP_817551.1|gp102 59 8e-09 ref|NP_690729.1|SSB protein 51 2e-06 ref|NP_075481.1|ssDNA binding protein 47 4e-05 >ref|NP_958203.1|gene 27 protein Length = 157 Score = 109 bits (273), Expect = 4e-24 Identities = 56/103 (54%), Positives = 72/103 (69%), Gaps = 1/103 (0%) Frame = +2 Query: 3212 ARDLNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRD-QNGDLHDETEWFNVVAWN 3388 +R +NKV+IIGRLG DPE+RY+ S A VA S QWRD Q G+ ++TEW VV Sbjct: 3 SRGVNKVIIIGRLGHDPEIRYSPSGTAFANLTVATSEQWRDKQTGEQKEQTEWHRVVMSG 62 Query: 3389 RLAEICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIV 3517 +LAEI +YL +G+ VY+EG+L+TR W+D QSGQ R EVIV Sbjct: 63 KLAEIASEYLRKGSEVYLEGKLRTRKWQD-QSGQDRFTTEVIV 104 >ref|NP_944246.1|putative single-strand DNA binding protein Length = 169 Score = 99.4 bits (246), Expect = 6e-21 Identities = 49/106 (46%), Positives = 73/106 (68%), Gaps = 1/106 (0%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQ-NGDLHDETEWFNVVAWNRLA 3397 +NKV+++G LG DPE+RY S VA R+A + +++D+ +GD+ + TEW V + RLA Sbjct: 4 VNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDIKEATEWHRVSFFGRLA 63 Query: 3398 EICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILL 3535 EI ++L +GA VYIEGR++TR W+D QSGQ R E++ M +L Sbjct: 64 EIVDEHLRKGASVYIEGRIKTRKWQD-QSGQDRYTTEIVADRMQML 108 >ref|YP_164279.1|single-stranded DNA-binding protein Length = 167 Score = 96.7 bits (239), Expect = 4e-20 Identities = 49/104 (47%), Positives = 65/104 (62%), Gaps = 1/104 (0%) Frame = +2 Query: 3209 MARDLNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRD-QNGDLHDETEWFNVVAW 3385 MAR +NKV+++G LG DP+ R T V + +A S W+D Q G + TEW VV + Sbjct: 1 MARGVNKVILVGHLGQDPDARSTPGGKAVTSLSLATSESWKDKQTGQQQERTEWHRVVLF 60 Query: 3386 NRLAEICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIV 3517 RLAEI QYL +G++VYIEG L+TR W+ Q GQ EV+V Sbjct: 61 GRLAEIAAQYLRKGSQVYIEGSLRTRKWQ-GQDGQDHYSTEVVV 103 >ref|YP_006485.1|Ssb Length = 162 Score = 95.9 bits (237), Expect = 6e-20 Identities = 47/102 (46%), Positives = 66/102 (64%), Gaps = 1/102 (0%) Frame = +2 Query: 3215 RDLNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRD-QNGDLHDETEWFNVVAWNR 3391 R +NKV++IG LG DPE+RY + V +A + WRD Q G ++TEW VV + + Sbjct: 4 RGVNKVILIGTLGQDPEIRYIPNGGAVGRLSIATNESWRDKQTGQQKEQTEWHKVVLFGK 63 Query: 3392 LAEICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIV 3517 LAEI +YL +G++VYIEG+L+TR W D +G R E+IV Sbjct: 64 LAEIASEYLRKGSQVYIEGKLKTRKWTD-DAGVERYTTEIIV 104 >ref|NP_438126.1|single-strand binding protein Length = 139 Score = 79.7 bits (195), Expect = 5e-15 Identities = 41/106 (38%), Positives = 67/106 (63%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAE 3400 +N V+++GR+ D ELRYTAS VATF +A +R++++QNG+ E ++ N V W + AE Sbjct: 2 INNVVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGE--READFINCVIWRQSAE 59 Query: 3401 ICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLD 3538 + +GA + + GR+QTR +E+ Q GQ EV+ + +L+ Sbjct: 60 NLANWAKKGALIGVTGRIQTRNYEN-QQGQRVYVTEVVADNFQMLE 104 >ref|NP_795558.1|putative single-strand DNA-binding protein Length = 139 Score = 79.7 bits (195), Expect = 5e-15 Identities = 41/106 (38%), Positives = 67/106 (63%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAE 3400 +N V+++GR+ D ELRYTAS VATF +A +R++++QNG+ E ++ N V W + AE Sbjct: 2 INNVVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGE--READFINCVIWRQSAE 59 Query: 3401 ICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLD 3538 + +GA + + GR+QTR +E+ Q GQ EV+ + +L+ Sbjct: 60 NLANWAKKGALIGVTGRIQTRNYEN-QQGQRVYVTEVVADNFQMLE 104 >ref|NP_463525.1|putative SSB protein Length = 160 Score = 79.3 bits (194), Expect = 6e-15 Identities = 40/106 (37%), Positives = 67/106 (63%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAE 3400 +N+V+++GRL DP+LRYT + A VATF +A +R + +QNG+ E ++ N V W + AE Sbjct: 2 MNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRMFTNQNGE--READFINCVVWRKPAE 59 Query: 3401 ICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLD 3538 +L +G+ ++GR+QTR +ED G+ EV+ + + L+ Sbjct: 60 NVANFLKKGSMAGVDGRVQTRNYED-NDGKRVFVTEVVAESVQFLE 104 >ref|NP_112675.1|SSB Length = 150 Score = 77.0 bits (188), Expect = 3e-14 Identities = 41/106 (38%), Positives = 65/106 (61%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAE 3400 +N V+++GRL DPELRYT + V TF +A +RQ+++ NG+ E ++ N V W + AE Sbjct: 2 INNVVLVGRLTRDPELRYTPQNQAVGTFGLAVNRQFKNANGE--READFINCVIWRQQAE 59 Query: 3401 ICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLD 3538 ++ +GA + I GR+QTR +E+ Q GQ EV+ +L+ Sbjct: 60 NLAKFAKKGALIGITGRIQTRNYEN-QQGQKVYVTEVVADTFQMLE 104 >ref|NP_038310.1|ORF9 Length = 148 Score = 76.6 bits (187), Expect = 4e-14 Identities = 39/106 (36%), Positives = 66/106 (62%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAE 3400 +N +++GRL DPE +YT S+ VA+F +A +R ++D NG+ E ++ N V W + AE Sbjct: 2 INNTVLVGRLTKDPEFKYTGSNIAVASFSLAVNRNFKDANGE--READFINCVIWRQQAE 59 Query: 3401 ICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLD 3538 + +GA + I GR+QTR++E+ Q GQ EV+ ++ +L+ Sbjct: 60 NLANWAKKGALIGITGRIQTRSYEN-QQGQRVYVTEVVAENFQMLE 104 >ref|NP_076587.1|SSB protein Length = 150 Score = 75.1 bits (183), Expect = 1e-13 Identities = 40/106 (37%), Positives = 65/106 (61%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAE 3400 +N V+++GRL DPELR+T + V TF +A +RQ+++ NG+ E ++ N V W + AE Sbjct: 2 INNVVLVGRLTRDPELRHTPQNQAVGTFGLAVNRQFKNANGE--READFINCVIWRQQAE 59 Query: 3401 ICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLD 3538 ++ +GA + I GR+QTR +E+ Q GQ EV+ +L+ Sbjct: 60 NLAKFAKKGALIGITGRIQTRNYEN-QQGQKVYVTEVVADTFQMLE 104 >ref|NP_108692.1|single-strand binding protein Length = 150 Score = 73.9 bits (180), Expect = 2e-13 Identities = 40/106 (37%), Positives = 64/106 (60%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAE 3400 +N V+++GRL DPELR+T + V TF +A +RQ+++ NG+ E + N V W + AE Sbjct: 2 INNVVLVGRLTRDPELRHTPQNQAVGTFGLAVNRQFKNANGE--READLINCVIWRQQAE 59 Query: 3401 ICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLD 3538 ++ +GA + I GR+QTR +E+ Q GQ EV+ +L+ Sbjct: 60 NLAKFAKKGALIGITGRIQTRNYEN-QQGQKVYVTEVVADTFQMLE 104 >ref|NP_150144.1|putative SSB protein Length = 181 Score = 71.2 bits (173), Expect = 2e-12 Identities = 39/106 (36%), Positives = 65/106 (61%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAE 3400 +N V+++GRL D ELRYT S+ VATF +A +R ++++ G+ E ++ N V W +LAE Sbjct: 2 INNVVLVGRLTRDAELRYTQSNIAVATFTLAVNRPFKNEAGE--READFINCVIWRQLAE 59 Query: 3401 ICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLD 3538 + +G+ + + G +QTR++ D Q GQ EV+ + LL+ Sbjct: 60 NLANWAKKGSLIGVTGVIQTRSY-DNQQGQRVYVTEVVASNFQLLE 104 >ref|NP_835537.1|single-strand DNA-binding protein Length = 156 Score = 71.2 bits (173), Expect = 2e-12 Identities = 39/106 (36%), Positives = 66/106 (62%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAE 3400 LN+ +++GRL DPELR T S VA+F +A +R + + G+ E ++ N++ + + AE Sbjct: 2 LNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGER--EADFINIIVFKKQAE 59 Query: 3401 ICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLD 3538 ++YLS+G+ ++GRLQTR +E+ + GQ EVI + L+ Sbjct: 60 NVNKYLSKGSLAGVDGRLQTRNYEN-KEGQRVYVTEVIADSIQFLE 104 >ref|NP_058484.1|ssDNA binding protein Length = 156 Score = 70.9 bits (172), Expect = 2e-12 Identities = 39/106 (36%), Positives = 66/106 (62%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAE 3400 +N+ +++GRL DPELR T S VA+F +A +R + + G+ E ++ NV+ + + AE Sbjct: 2 INRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGER--EADFINVIVFKKQAE 59 Query: 3401 ICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLD 3538 ++YLS+G+ ++GRLQTR +E+ + GQ EVI + L+ Sbjct: 60 NVNKYLSKGSLTGVDGRLQTRNYEN-KEGQRVYVTEVIADSIQFLE 104 >ref|NP_612868.1|putative single stranded DNA binding protein Length = 138 Score = 70.5 bits (171), Expect = 3e-12 Identities = 38/107 (35%), Positives = 68/107 (63%), Gaps = 1/107 (0%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTAS-DAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLA 3397 +NKV++IGRL DPELR+TA+ VA F +A +R+++ +NG+ E ++ +A+ + Sbjct: 1 MNKVVLIGRLTKDPELRFTATKGTAVARFTLAVNRKYKGENGEY--EADFIQCIAYGKPG 58 Query: 3398 EICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLD 3538 EI QY+++G ++ I G ++T ++ED + G R V+V+ +D Sbjct: 59 EIIAQYMTKGRQLAIVGNIRTGSYED-KEGTKRYTTGVVVEGFDFID 104 >ref|NP_076649.1|SSB Length = 141 Score = 69.7 bits (169), Expect = 5e-12 Identities = 37/107 (34%), Positives = 63/107 (58%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAE 3400 +N V ++GR+ +PELRYT + VATF +A +R +++ NG+ E ++ N V W + AE Sbjct: 2 INNVTLVGRITKEPELRYTPQNKAVATFTLAVNRAFKNANGE--READFINCVIWGKSAE 59 Query: 3401 ICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLDQ 3541 + +G + + G +QTR +E+ Q GQ EVI + +L++ Sbjct: 60 NLANWTHKGQLIGVTGSIQTRNYEN-QQGQRVYVTEVIANNFQVLEK 105 >ref|NP_663648.1|putative single stranded binding protein Length = 141 Score = 67.0 bits (162), Expect = 3e-11 Identities = 35/107 (32%), Positives = 63/107 (58%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAE 3400 +N V ++GR+ +PELRYT + VATF +A +R +++ NG+ E ++ + V W + AE Sbjct: 2 INNVTLVGRITKEPELRYTPQNKAVATFTLAVNRAFKNANGE--READFISCVIWGKSAE 59 Query: 3401 ICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLDQ 3541 + +G + + G +QTR +E+ Q GQ EV+ + +L++ Sbjct: 60 NLANWTHKGQLIGVIGNIQTRNYEN-QQGQRVYITEVVASNFQVLEK 105 >ref|NP_061608.1|single strand DNA binding protein Length = 142 Score = 66.6 bits (161), Expect = 4e-11 Identities = 36/106 (33%), Positives = 63/106 (59%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAE 3400 LN+ +++GRL DPE R T + V TF +A +R + + G+ E ++ N V + + AE Sbjct: 2 LNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGE--READFINCVTFRKQAE 59 Query: 3401 ICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLD 3538 + YLS+G+ ++GRLQ+R++E+ + GQ EV+ + L+ Sbjct: 60 NVNHYLSKGSLAGVDGRLQSRSYEN-KDGQRVFVTEVVADSVQFLE 104 >ref|NP_817551.1|gp102 Length = 146 Score = 58.9 bits (141), Expect = 8e-09 Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 1/107 (0%) Frame = +2 Query: 3209 MARDLNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQNGDLHD-ETEWFNVVAW 3385 M++DL +V ++G L DPELR+T VA F V ++ + RD G+ D + + W Sbjct: 1 MSKDL-QVHLVGTLTADPELRFTQGGQAVANFTVVSNERRRDAQGNWVDGDATFLRCTIW 59 Query: 3386 NRLAEICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDM 3526 AE + L +G RV + G L+ R++E + G R+ +EV V ++ Sbjct: 60 RDAAENVAESLQKGQRVIVHGYLKQRSFE-TKEGDKRTVIEVEVDEI 105 >ref|NP_690729.1|SSB protein Length = 159 Score = 50.8 bits (120), Expect = 2e-06 Identities = 29/106 (27%), Positives = 52/106 (49%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAE 3400 +N V ++GRL DPELR+T + V F +A R +D + E ++ AW +AE Sbjct: 1 MNSVNLVGRLAADPELRHTNNGTAVVNFIMAVRRNRKDPTTGQY-EADFIRCQAWRGIAE 59 Query: 3401 ICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLD 3538 + G + + G +T +E Q G+ + +V+++ +D Sbjct: 60 VIANNFGTGRMIGVSGSWRTGAFE-GQDGKRVYTNDCVVENITFVD 104 >ref|NP_075481.1|ssDNA binding protein Length = 147 Score = 46.6 bits (109), Expect = 4e-05 Identities = 28/107 (26%), Positives = 60/107 (56%) Frame = +2 Query: 3221 LNKVMIIGRLGVDPELRYTASDAPVATFRVAASRQWRDQNGDLHDETEWFNVVAWNRLAE 3400 +N V +IG L DPEL+ + + F +A R ++++ + + ET++ VA+ + AE Sbjct: 1 MNTVNLIGNLVADPELK--GQNNNLVNFVIAVQRPFKNKQTNEY-ETDFIRCVAFGKTAE 57 Query: 3401 ICHQYLSRGARVYIEGRLQTRTWEDAQSGQTRSRVEVIVQDMILLDQ 3541 I ++G ++ + G +QT ++E+ Q GQ ++ V ++ +++ Sbjct: 58 IIANNFNKGNKIGVTGSIQTGSYENNQ-GQKVFTTDIAVNNITFVER 103 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,200,920 Number of Sequences: 14420 Number of extensions: 929427 Number of successful extensions: 3020 Number of sequences better than 0.5: 21 Number of HSP's better than 0.5 without gapping: 2355 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2997 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 4069973518 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig914 (8172 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_803812.1|ORF246 53 6e-07 ref|NP_932523.1|hypothetical protein 47 3e-05 ref|NP_943994.1|hypothetical protein 39 0.011 >ref|NP_803812.1|ORF246 Length = 218 Score = 52.8 bits (125), Expect = 6e-07 Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 1/167 (0%) Frame = +3 Query: 1290 SYAFAAVAHEGQRRQ-SGQPYIDHPIEVAIILLDLRLDTESIAAALLHDVVEDSGVPISV 1466 SYA AA GQ R SG+PY H ++VA + L + AA LHDV+ED+ V S Sbjct: 38 SYAIAAHTAVGQLRDGSGKPYWHHLLQVAEMAQLFDLSHAAYKAAWLHDVIEDTAVTASD 97 Query: 1467 IEQFFGQQVASLVDGVTKLSGYESKSKEEAQAGTYRKLIIASADDPRVVLIKLADRLHNM 1646 + + F V +LV +T ++ YE K R I+ + +KL D + NM Sbjct: 98 LTKLFSIPVVNLVTELTNVT-YEGNRKTRISLQHERLSRISWSGQS----LKLLDSISNM 152 Query: 1647 RTIHATPPQKQQRVARETLEIYAPLAHRLGMWQMKSELEDLAFKTLH 1787 +I P + E ++ + L + ++DLA L+ Sbjct: 153 WSIVNDKPDFAELYLTEKAQLISKLNN------CHPAIKDLAISVLY 193 >ref|NP_932523.1|hypothetical protein Length = 155 Score = 47.0 bits (110), Expect = 3e-05 Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 9/147 (6%) Frame = +3 Query: 1299 FAAVAHEGQRRQSGQPYIDHPIEVAIILLDLRLDTESIAAALL---HDVVEDS----GVP 1457 +A H GQ + G PYI HP++ ++ R D E++ +L HDVVED Sbjct: 14 YATNRHAGQFDKGGAPYILHPLQ---LMHWARRDREALDVQILCVLHDVVEDCYDDREEG 70 Query: 1458 ISVIEQFFGQQVASLVDGVTKLSGYESKSKEEAQAGTYRKLIIASADDPRVVLIKLADRL 1637 + I FG +A LVD VTK G +Y +I D R V K D Sbjct: 71 LRDINTLFGSSMAQLVDNVTKRDG-----------ESYECYLIRVNSDIRSVKCKRYDLR 119 Query: 1638 HN--MRTIHATPPQKQQRVARETLEIY 1712 +N +R + P+ +R + Y Sbjct: 120 NNADLRRLKGVTPKDTERAVKYMTAYY 146 >ref|NP_943994.1|hypothetical protein Length = 150 Score = 38.5 bits (88), Expect = 0.011 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Frame = +3 Query: 1281 IRRSYAFAAVAHEGQRRQSGQPYIDHPIEVAIILLDLRLDTESIAAALLHDVVED--SGV 1454 + + YA A A + G PY +H + V L + D + AAL HD++ED +G Sbjct: 3 LAKLYALVATAFADINDKGGHPYFEHCLAVLKGLPECA-DEATKQAALAHDIIEDIENGR 61 Query: 1455 PISVIEQFFGQQVASLVDGVTKLSGYESKSKEEAQAGTYRKLIIASADDPRVVLIKLAD 1631 + +I + LVD V+K G +SKE+ +A KL D R V IK++D Sbjct: 62 DL-LISNGMSLEAVQLVDNVSKRPG---ESKEDYKARV--KL------DIRSVYIKMSD 108 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,666,396 Number of Sequences: 14420 Number of extensions: 937545 Number of successful extensions: 2743 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 2196 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2735 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 3980306439 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig915 (6548 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_720276.1|GtrB 207 1e-53 ref|YP_006358.1|GtrB 207 1e-53 ref|NP_059582.1|O-antigen conversion protein 207 1e-53 ref|NP_599056.1|bactoprenol glucosyltransferase 204 1e-52 ref|YP_024516.1|putative DNA polymerase 140 2e-33 ref|NP_046860.1|DNA polymerase 131 1e-30 ref|YP_006950.1|DNA polymerase 130 2e-30 ref|NP_817633.1|gp44 129 3e-30 ref|NP_852498.1|DNA polymerase I 128 7e-30 ref|NP_075308.1|gp41 119 4e-27 ref|NP_039708.1|predicted 66.2Kd protein 119 5e-27 ref|YP_164694.1|orf59 108 7e-24 ref|NP_047956.2|gp11 96 5e-20 ref|YP_024986.1|DNA polymerase I 92 5e-19 ref|YP_024429.1|DNA polymerase I 92 5e-19 ref|NP_813726.1|gp11 92 7e-19 ref|NP_640280.1|DNA polymerase 80 4e-15 ref|NP_943839.1|gp61 79 8e-15 ref|NP_817817.1|gp56 77 2e-14 ref|NP_064753.1|RP DNA pol 75 9e-14 ref|NP_858986.1|DNA polymerase lacking N-terminal exonuclease do... 74 2e-13 ref|NP_848283.1|DNA polymerase 71 1e-12 ref|NP_041982.1|DNA polymerase 71 1e-12 ref|NP_523322.1|gene 5B protein 71 2e-12 ref|NP_523320.1|DNA polymerase 71 2e-12 ref|NP_877458.1|putative DNA directed DNA polymerase 68 1e-11 ref|YP_024841.1|Pas55 66 5e-11 ref|NP_052094.1|5B protein 65 7e-11 ref|NP_052093.1|DNA polymerase 65 7e-11 ref|NP_775225.1|DNA polymerase1 61 1e-09 ref|NP_853574.1|gp14 61 1e-09 ref|NP_795675.1|putative DNA polymerase A domain 53 5e-07 ref|NP_919002.1|putative DNA polymerase I 52 1e-06 ref|NP_705685.1|gp62 48 2e-05 ref|NP_958166.1|gp61 47 3e-05 ref|NP_944374.1|gp66 47 3e-05 ref|YP_024952.1|putative DNA polymerase protein 46 4e-05 ref|NP_813764.1|putative DNA polymerase 44 3e-04 ref|YP_024759.1|p31 41 0.002 ref|NP_958251.1|hypothetical protein 33 0.29 >ref|NP_720276.1|GtrB Length = 325 Score = 207 bits (527), Expect = 1e-53 Identities = 119/287 (41%), Positives = 170/287 (59%), Gaps = 1/287 (0%) Frame = -1 Query: 860 SVVAPVYNEEQLIAEFCRRVIAALEPLGEPFELVLVNDGCRDRSPEIMRELHQRDPRIKV 681 S+V PV+NEE I F + V E E+V +NDG +D + I+ ++ DP + Sbjct: 19 SLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPLVIP 78 Query: 680 INFSRNFGHQIAITAGTDYATGKAVIVIDSDLQDPPEVIPELIARWREGYQXXXXXXXXX 501 ++F+RNFG + A+ AG D+ATG AVI ID DLQDP EVIP LI +W+ G Sbjct: 79 LSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDR 138 Query: 500 XXETWFKKTTAAIFYRLIVRITNVNIPVDTGDFRLMDRKVVDALKRMREHHRFMRGLSAW 321 + K+ TA FY+L +I+N I + GDFRLM R VV+ +K+M E + FM+G+ +W Sbjct: 139 STDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFMKGVLSW 198 Query: 320 IGFRQTGVPYRRHARAAGTTKYPLRKMLRFALDGITSFSYLPLQLATYLGFIVAAISMIF 141 +G + V Y R R AG +K+ K+ AL+GITSFS PL++ TY+G +A +S ++ Sbjct: 199 VGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMSFLY 258 Query: 140 LLVVFVMRLA-DPSAPEPAFYGQASTLASVLFLGAVQLISLGIIGEY 3 + + +L + P G S L SVLFLG VQLI +GI+GEY Sbjct: 259 GAWMIIDKLIFGNNVP-----GYPSLLVSVLFLGGVQLIGIGILGEY 300 >ref|YP_006358.1|GtrB Length = 310 Score = 207 bits (527), Expect = 1e-53 Identities = 119/287 (41%), Positives = 170/287 (59%), Gaps = 1/287 (0%) Frame = -1 Query: 860 SVVAPVYNEEQLIAEFCRRVIAALEPLGEPFELVLVNDGCRDRSPEIMRELHQRDPRIKV 681 S+V PV+NEE I F + V E E+V +NDG +D + I+ ++ DP + Sbjct: 4 SLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPLVIP 63 Query: 680 INFSRNFGHQIAITAGTDYATGKAVIVIDSDLQDPPEVIPELIARWREGYQXXXXXXXXX 501 ++F+RNFG + A+ AG D+ATG AVI ID DLQDP EVIP LI +W+ G Sbjct: 64 LSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDR 123 Query: 500 XXETWFKKTTAAIFYRLIVRITNVNIPVDTGDFRLMDRKVVDALKRMREHHRFMRGLSAW 321 + K+ TA FY+L +I+N I + GDFRLM R VV+ +K+M E + FM+G+ +W Sbjct: 124 STDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFMKGVLSW 183 Query: 320 IGFRQTGVPYRRHARAAGTTKYPLRKMLRFALDGITSFSYLPLQLATYLGFIVAAISMIF 141 +G + V Y R R AG +K+ K+ AL+GITSFS PL++ TY+G +A +S ++ Sbjct: 184 VGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMSFLY 243 Query: 140 LLVVFVMRLA-DPSAPEPAFYGQASTLASVLFLGAVQLISLGIIGEY 3 + + +L + P G S L SVLFLG VQLI +GI+GEY Sbjct: 244 GAWMIIDKLIFGNNVP-----GYPSLLVSVLFLGGVQLIGIGILGEY 285 >ref|NP_059582.1|O-antigen conversion protein Length = 310 Score = 207 bits (527), Expect = 1e-53 Identities = 119/287 (41%), Positives = 170/287 (59%), Gaps = 1/287 (0%) Frame = -1 Query: 860 SVVAPVYNEEQLIAEFCRRVIAALEPLGEPFELVLVNDGCRDRSPEIMRELHQRDPRIKV 681 S+V PV+NEE I F + V E E+V +NDG +D + I+ ++ DP + Sbjct: 4 SLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPLVIP 63 Query: 680 INFSRNFGHQIAITAGTDYATGKAVIVIDSDLQDPPEVIPELIARWREGYQXXXXXXXXX 501 ++F+RNFG + A+ AG D+ATG AVI ID DLQDP EVIP LI +W+ G Sbjct: 64 LSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDR 123 Query: 500 XXETWFKKTTAAIFYRLIVRITNVNIPVDTGDFRLMDRKVVDALKRMREHHRFMRGLSAW 321 + K+ TA FY+L +I+N I + GDFRLM R VV+ +K+M E + FM+G+ +W Sbjct: 124 STDGRMKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFMKGVLSW 183 Query: 320 IGFRQTGVPYRRHARAAGTTKYPLRKMLRFALDGITSFSYLPLQLATYLGFIVAAISMIF 141 +G + V Y R R AG +K+ K+ AL+GITSFS PL++ TY+G +A +S ++ Sbjct: 184 VGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMSFLY 243 Query: 140 LLVVFVMRLA-DPSAPEPAFYGQASTLASVLFLGAVQLISLGIIGEY 3 + + +L + P G S L SVLFLG VQLI +GI+GEY Sbjct: 244 GAWMIIDKLIFGNNVP-----GYPSLLVSVLFLGGVQLIGIGILGEY 285 >ref|NP_599056.1|bactoprenol glucosyltransferase Length = 307 Score = 204 bits (518), Expect = 1e-52 Identities = 116/288 (40%), Positives = 170/288 (59%), Gaps = 2/288 (0%) Frame = -1 Query: 860 SVVAPVYNEEQLIAEFCRRVIAALEPLGEPFELVLVNDGCRDRSPEIMRELHQRDPRIKV 681 S+V PV+NEE+ I F + V E E+V +NDG +D + I+ L DP + Sbjct: 4 SLVVPVFNEEEAIPVFYKTVREFQELKPYEVEIVFINDGSKDATESIINALAVSDPLVVP 63 Query: 680 INFSRNFGHQIAITAGTDYATGKAVIVIDSDLQDPPEVIPELIARWREGYQXXXXXXXXX 501 ++F+RNFG + A+ AG D+A+G AVI ID DLQDP EVIP LI +W+ G Sbjct: 64 LSFTRNFGKEPALFAGLDHASGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDR 123 Query: 500 XXETWFKKTTAAIFYRLIVRITNVNIPVDTGDFRLMDRKVVDALKRMREHHRFMRGLSAW 321 + K+ TA FY+L +I+ I + GDFRLM R+VV+ +K + E + FM+G+ +W Sbjct: 124 STDGRLKRKTAEWFYKLHNKISTPKIEENVGDFRLMSREVVENIKLLPERNLFMKGILSW 183 Query: 320 IGFRQTGVPYRRHARAAGTTKYPLRKMLRFALDGITSFSYLPLQLATYLGFIVAAISMIF 141 +G + V Y R R AG +K+ K+ AL+GITSFS PL++ TY+G VA+IS ++ Sbjct: 184 VGGQTDVVEYVRAERVAGISKFNGWKLWNLALEGITSFSTFPLRVWTYIGLFVASISFLY 243 Query: 140 --LLVVFVMRLADPSAPEPAFYGQASTLASVLFLGAVQLISLGIIGEY 3 +++ + +P G S L S+LFLG VQLI +G++GEY Sbjct: 244 GAWMIIDTLVFGNP------VRGYPSLLVSILFLGGVQLIGIGVLGEY 285 >ref|YP_024516.1|putative DNA polymerase Length = 1072 Score = 140 bits (353), Expect = 2e-33 Identities = 90/345 (26%), Positives = 176/345 (51%), Gaps = 20/345 (5%) Frame = -3 Query: 5784 KSGGYSI-TAEVLEELSQLYPIAADILTYRQLTKLK-STYIDALPDLVNPRTGRIHTSYN 5611 K+ GY++ E+ +++ +L ++L Y + K +++ L +++N + +H S++ Sbjct: 674 KAIGYALDNLELKDDVKELL----ELLKYHASMQTKRNSFTKKLLNMINKQKRTLHGSFS 729 Query: 5610 QLGAATGRLSSNNPNLQNIPVRTEEGRE------IRRAFVAE-PGWRFVAADYSQIELRV 5452 + G T RLSS+NPNLQN+P T + + I+R+FV+ + +DYS +E+R+ Sbjct: 730 ETGTETSRLSSSNPNLQNLPAHTSDVNKFDYKHPIKRSFVSRFENGVLLGSDYSALEMRI 789 Query: 5451 LAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAFGL 5272 + + D +++ +F G DIH ATAS ++ V K +R+ K V FG+ +G S F Sbjct: 790 IGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQATKAVNFGLAFGESPFSF 849 Query: 5271 AQRLGIERDLARQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDL-XXXX 5095 A + +E A ++ + F P ++ ID EF +Q+GYV T+ G RR + Sbjct: 850 AGKNNMEVSEAEEIFEKYFQTKPSVKTSIDNVHEFVQQYGYVDTMHGHRRFIRSAQSTDK 909 Query: 5094 XXXXXXXXXAINAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDELIXXXXXXXX 4915 + N IQG+ + L M++ + ++ + L+++++ VHD ++ Sbjct: 910 KIKNEGLRQSFNTIIQGSGSFLTNMSLTYLDDFIQSRNLKSKVIATVHDSILIDCPPEEA 969 Query: 4914 XXXARLLRDVMSSVYRDLV----------VPLSVNLEVGPNWDEM 4810 A++ +M ++ D + P+ ++E+G N+++M Sbjct: 970 KIMAKVTIHIMENLPFDFLKAEIDGKEVQYPIEADMEIGLNYNDM 1014 >ref|NP_046860.1|DNA polymerase Length = 607 Score = 131 bits (329), Expect = 1e-30 Identities = 104/362 (28%), Positives = 171/362 (47%), Gaps = 3/362 (0%) Frame = -3 Query: 6015 ELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGPFNINSGQQLNDV 5836 E + E+ + ++ G LD EY ++L + + E + G +N+ + + + Sbjct: 222 EHKISEICSYIDRRGFLLDVEYSQQLADKWLGE-QQVWEAVLLNEYGIEKVNATEDVAEA 280 Query: 5835 LFGRLGIDPRAH---GLSKLKSGGYSITAEVLEELSQLYPIAADILTYRQLTKLKSTYID 5665 F LG A G K+ G Y A+++ + +A + ++L K +++++ Sbjct: 281 -FEELGHKFTAFTDSGKRKVDKGFY---ADMIAAGGEKAHLAEMVQEAKKLGKWRTSWVQ 336 Query: 5664 ALPDLVNPRTGRIHTSYNQLGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAEPGWRFV 5485 D R HT N L A T R+S Q +P +RR F+A+PG Sbjct: 337 TFLD-TRDSEDRCHTFVNPLQARTSRMSITGIPAQTLPA---SDWTVRRCFLADPGHVMA 392 Query: 5484 AADYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVF 5305 + DY ELRVLA +SGD +I AF+ G D+H TA FG T D +R+ AKTV F Sbjct: 393 SIDYQAQELRVLAALSGDRTMIQAFKDGADLHLMTARAAFGDHITK-DDPERKYAKTVNF 451 Query: 5304 GVIYGISAFGLAQRLGIERDLARQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRR 5125 G +YG A +A++ GI + A+Q++D +PG+ RY + +++GY+ GRR Sbjct: 452 GRVYGGGANTVAEQTGISIETAKQVVDGFDKAYPGVTRYSRKLANEAKRNGYIINPMGRR 511 Query: 5124 RVMEDLXXXXXXXXXXXXXAINAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDE 4945 ++ A+N IQ T+ D+ A++ +H E G L L +HDE Sbjct: 512 LPVD---------RSRTYSALNYQIQSTSRDVTCKALIRLH----EAGFTPYLRLPIHDE 558 Query: 4944 LI 4939 ++ Sbjct: 559 IV 560 >ref|YP_006950.1|DNA polymerase Length = 855 Score = 130 bits (327), Expect = 2e-30 Identities = 113/408 (27%), Positives = 190/408 (46%), Gaps = 41/408 (10%) Frame = -3 Query: 6039 LHDLYYRVELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIY---------Q 5887 L LYY V +P L +E G+ + + L+E + E++Y Q Sbjct: 337 LCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYTYPEVKQLEQ 396 Query: 5886 QAGGPFNINSGQQLNDVLFGRLGIDPRAHGLSKLKSGGYSITAEVLEELSQLYPIAADIL 5707 FN NS +QL +LF +G+ P +G S AE L EL+ +PIA +L Sbjct: 397 DQNEAFNPNSVKQLRVLLFDYVGLTPTG---KLTDTGADSTDAEALNELATQHPIAKTLL 453 Query: 5706 TYRQLTKLKSTYIDALPDLVNPRTGRIHTSYNQLGAATGRLSSNNP-NLQNIPVRTEEGR 5530 R+LTKL STY++ + ++ G I T +++ +GRLSS+ NLQ +P + Sbjct: 454 EIRKLTKLISTYVEKILLSIDA-DGCIRTGFHEHMTTSGRLSSSGKLNLQQLP---RDES 509 Query: 5529 EIRRAFVAEPGWRFVAADYSQIELRVLAHMSGDENLIAAF-------QQGLDIHAATASR 5371 I+ VA PG+R +A D + E+ A +SGD N+ F + D H+ A Sbjct: 510 IIKGCVVAPPGYRVIAWDLTTAEVYYAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAHM 569 Query: 5370 LFGV--EPTAVDK---NQRRVAKTVVFGVIYGISAFGLAQRLG--------------IER 5248 +F + EP V K R+ AK + FG++YG +A + +E Sbjct: 570 VFKLQCEPRDVKKLFPALRQAAKAITFGILYGSGPAKVAHSVNEALLEQAAKTGEPFVEC 629 Query: 5247 DLA--RQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDL-XXXXXXXXXX 5077 +A ++ I+ F QFP ++R+ID+ + + HG++ + FGR+R + ++ Sbjct: 630 TVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHGFIYSHFGRKRRLHNIHSEDRGVQGEE 689 Query: 5076 XXXAINAPIQGTAADLMKMAMVNVHRALREQGL--RTRLLLQVHDELI 4939 NA IQ ++D + + V+ + GL ++++ VHD ++ Sbjct: 690 IRSGFNAIIQSASSDSLLLGAVDADNEIISLGLEQEMKIVMLVHDSVV 737 >ref|NP_817633.1|gp44 Length = 604 Score = 129 bits (325), Expect = 3e-30 Identities = 107/375 (28%), Positives = 179/375 (47%), Gaps = 6/375 (1%) Frame = -3 Query: 6045 PALHDLYYRVELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRI---ADLVERIYQQAGG 5875 PA+ E L E+ + ME G LD EY +L ++ A + +Y G Sbjct: 211 PAVSQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASKADILY----G 266 Query: 5874 PFNINSGQQLNDVLFGRLGIDPRAHGLSKLKSGGYSITAEVLEEL-SQLYPIAADILTYR 5698 N+NS Q+ + L R G+ + + ++G + +L+ L + P+A I + Sbjct: 267 LENVNSPIQVAEALMRR-GVKIK----ERTETGQPKVDKVLLDRLIKEGDPLAEAITEAK 321 Query: 5697 QLTKLKSTYIDALPDLVNPRTGRIHTSYNQLGAATGRLSSNNPNLQNIPVRTEEGRE--I 5524 + K + T++ D + + R H + N L A T R+S + IP +T + + Sbjct: 322 KWGKWEKTWVRKFLDSRDSKD-RCHANINPLQARTARMS-----ITGIPAQTLPSGDWLV 375 Query: 5523 RRAFVAEPGWRFVAADYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAV 5344 RR F+A+ G + DY ELRVLA +SGD +I AF+ G D+H TA + Sbjct: 376 RRCFLADEGQLMASVDYQAQELRVLAALSGDRTMIQAFKDGADLHLMTARAAWPDREITK 435 Query: 5343 DKNQRRVAKTVVFGVIYGISAFGLAQRLGIERDLARQLIDNLFAQFPGIRRYIDQTLEFG 5164 D +R+ AKTV FG +YG A +A++ G++ + A+Q++D +PG++R + Sbjct: 436 DSPERKYAKTVNFGRVYGGGAKTVAEQTGLDMEAAKQVVDGFDRAYPGVQRLSAKLQREA 495 Query: 5163 RQHGYVQTLFGRRRVMEDLXXXXXXXXXXXXXAINAPIQGTAADLMKMAMVNVHRALREQ 4984 Q+G++ T GRR ++ A+N IQ T+ D+ A++ +H E Sbjct: 496 SQNGHIVTPKGRRLPVD---------PSRAYSALNYLIQSTSRDVTGEALIRLH----EA 542 Query: 4983 GLRTRLLLQVHDELI 4939 G L L +HDE++ Sbjct: 543 GFTKYLRLPIHDEIL 557 >ref|NP_852498.1|DNA polymerase I Length = 802 Score = 128 bits (322), Expect = 7e-30 Identities = 103/359 (28%), Positives = 171/359 (47%), Gaps = 13/359 (3%) Frame = -3 Query: 5976 TGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGPFNINSGQQLNDVLFGRLGIDPRAHG 5797 TG LDQE L ++ ++ D+ E Y P N + D +L + A Sbjct: 399 TGASLDQEALIDMAFMLENKLNDIDEEKYLGVSLPENWENIDPEKDPTLDKL--ERGAIR 456 Query: 5796 LSKLKSGGYSITA-EVLEELSQLYPIAADILTYRQLTKLKSTYIDALPDLVNPRTGRIHT 5620 ++K + Y A EV+++L ++ ++ T L S++I +N +GRIH Sbjct: 457 IAKREPHPYKEQALEVIDQLKKI----------QKYTTLLSSHIIGREKYLNFMSGRIHA 506 Query: 5619 SYNQLGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAEPGWRFVAADYSQIELRVLAHM 5440 Y+ TGRL+S NPN QN+P + +IR FV +PG D+S ELR++A Sbjct: 507 GYSPF-TETGRLNSFNPNGQNVPRPDNDEFKIRNFFVPKPGKILFFIDFSGFELRLMAWK 565 Query: 5439 SGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGIS------AF 5278 SGDE + F G D+H TAS + G + K +R AK FG+ YG + F Sbjct: 566 SGDEVMTELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTF 625 Query: 5277 GLAQRLGIERDLARQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDL-XX 5101 + D Q+++ + + I Y + + R+ GYVQT++G R++ + Sbjct: 626 KTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIYGYMRLLPGINSA 685 Query: 5100 XXXXXXXXXXXAINAPIQGTAADLMKMAMVNVHRAL-REQGLRTR----LLLQVHDELI 4939 A N P+QG+AAD+MK ++ ++ +++G+ + ++ Q+HDE+I Sbjct: 686 NRRDRGSAERQAANTPVQGSAADIMKKVQNEIYESIGKQEGVLSHGSADMIAQIHDEII 744 >ref|NP_075308.1|gp41 Length = 608 Score = 119 bits (298), Expect = 4e-27 Identities = 105/397 (26%), Positives = 185/397 (46%), Gaps = 1/397 (0%) Frame = -3 Query: 6015 ELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGPFNINSGQQLNDV 5836 E L EV++ +E TG LD +Y +L ++ ++ + + A G ++NS ++L D Sbjct: 221 EHKLAEVMSYVERTGFLLDVDYSEKLSADMLRK-SEHYTAVARYAYGVDSVNSTEKLADG 279 Query: 5835 LFGRLGIDPRAHGLSKLKSGGYSITAEVLEELSQL-YPIAADILTYRQLTKLKSTYIDAL 5659 L R G+ + + +G + AE+LE L++ +A + ++ + T++ Sbjct: 280 L-ERTGVKIKG----RTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSWEKTWVRNF 334 Query: 5658 PDLVNPRTGRIHTSYNQLGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAEPGWRFVAA 5479 + R+H N L A T R+S+NNP+ QN+P +RR F+A+PG V+ Sbjct: 335 IER-RDANDRVHPGINPLQARTARMSTNNPSAQNLPAGDWM---VRRCFLADPGQLMVSV 390 Query: 5478 DYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGV 5299 DY ELRVLA ++ D +I AF+ D+H TA + + VD R+V K V F Sbjct: 391 DYQAQELRVLAALANDRTMIQAFKDNADLHQITA------DASGVD---RKVGKMVNFAY 441 Query: 5298 IYGISAFGLAQRLGIERDLARQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRV 5119 ++G +A + GI A+++I +P + GYV T GRR Sbjct: 442 VFGSGPSTIAAQAGITFPEAKRVIAGFEQSYPEVTALSKSLQREAANLGYVITPTGRRLP 501 Query: 5118 MEDLXXXXXXXXXXXXXAINAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDELI 4939 ++ A+N +Q T+ D+ A++ +H E G+ + L +HDE++ Sbjct: 502 VD---------PDRGYAALNYMVQSTSRDVTASAVLRLH----EAGMTPMIRLVIHDEVL 548 Query: 4938 XXXXXXXXXXXARLLRDVMSSVYRDLVVPLSVNLEVG 4828 A+ + +M +R +++ + + EVG Sbjct: 549 ASVPEAEAEATAKEIGRIMEQTFRGVLI--NTDPEVG 583 >ref|NP_039708.1|predicted 66.2Kd protein Length = 595 Score = 119 bits (297), Expect = 5e-27 Identities = 100/361 (27%), Positives = 168/361 (46%), Gaps = 2/361 (0%) Frame = -3 Query: 6015 ELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGPFNINSGQQLNDV 5836 E + E+ + ++ G LD EY R L + ++ E I G +NS + L + Sbjct: 221 EHKISEICSYIDRQGFLLDVEYSRSLAEKWLAD-QEVWEAIAFTEYGVEKVNSTEDLAEG 279 Query: 5835 LFGRLGIDPRAHGLSKLKSGGYSITAEVLEELSQLYPIAADILTYRQLTKLKSTYIDALP 5656 L +G+ + + ++ +++E+ ++L IA + ++L K + T++ Sbjct: 280 L-EEMGVKITGRTETGKRQVNAALLDKLVEDGNELAAIAQEA---KKLGKWRKTWVQKFI 335 Query: 5655 DLVNPRTGRIHTSYNQLGAATGRLSSNNPNLQNIPVRTEEGRE--IRRAFVAEPGWRFVA 5482 D R HT N L A T R+S + IP +T + +RR F+AEPG + Sbjct: 336 D-TRDSEDRCHTFINPLQARTSRMS-----ITGIPAQTLPSSDWIVRRCFIAEPGDVMAS 389 Query: 5481 ADYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFG 5302 DY ELRVLA +SGD N+I AF+ G D+H TA + R+V KT F Sbjct: 390 VDYQAQELRVLAALSGDRNMIEAFENGADLHQMTAD---------AAQVPRKVGKTANFQ 440 Query: 5301 VIYGISAFGLAQRLGIERDLARQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRRR 5122 +YG A LA+ +GI +A+++ + A +PG+ R + ++GY+ GRR Sbjct: 441 KVYGGGAKALAEAVGISIPVAKRVHEAFSATYPGVERLSKKLAMEAGRNGYIVNAMGRRL 500 Query: 5121 VMEDLXXXXXXXXXXXXXAINAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDEL 4942 ++ A+N IQ ++ D+ A++ +H E G L L +HDE+ Sbjct: 501 PVDS---------SRTYSALNYMIQSSSRDVTCRALIRLH----EAGYTPYLRLPIHDEI 547 Query: 4941 I 4939 + Sbjct: 548 V 548 >ref|YP_164694.1|orf59 Length = 988 Score = 108 bits (270), Expect = 7e-24 Identities = 79/290 (27%), Positives = 142/290 (48%), Gaps = 12/290 (4%) Frame = -3 Query: 5772 YSITAEVLEELSQLYPIAADILTYRQLTKLKS---TYIDALPDLVNPRTGRIHTSYNQLG 5602 YS+ E L + Y I Y + +K ++ ++ID LP+ V + + S+N Sbjct: 566 YSVGKAAQEYLEETYKTKF-IDLYSKYSKAETALGSFIDKLPE-VRDKDDFVKPSFNPYV 623 Query: 5601 AATGRLSSNNP-NLQNIPVRTEEGREIRRAFVAEPGWR-------FVAADYSQIELRVLA 5446 T RLSS+ N QN RT+ + ++ + +R + DYS +E+ +A Sbjct: 624 TETSRLSSSGAFNAQNQTRRTDNPNDFNYSYGVKSMYRSRFKGGILLNMDYSALEIYTMA 683 Query: 5445 HMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAFGLAQ 5266 +S D N+ A DIH AS F V V KN R AK V FG+ Y + LA+ Sbjct: 684 MLSKDRNMTQALLDHKDIHKHNASLGFHVPYDEVTKNLRTSAKKVSFGIPYSMGIKTLAK 743 Query: 5265 RLGIERDLARQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDL-XXXXXX 5089 LG++ A+++ D + A P +++ + + EF ++ Y +TL G RR + ++ Sbjct: 744 DLGVDEKEAQRIYDAILATMPQVKQAMADSQEFAARYKYAETLNGFRRDLSNVDSILKDV 803 Query: 5088 XXXXXXXAINAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDELI 4939 A N IQG+ ++++ + +++VH ++ L+++++ VHD ++ Sbjct: 804 RAKAKRQAFNTEIQGSGSNIVNLGLISVHEQFCKRNLKSKIIATVHDSIL 853 >ref|NP_047956.2|gp11 Length = 617 Score = 95.9 bits (237), Expect = 5e-20 Identities = 139/515 (26%), Positives = 209/515 (40%), Gaps = 42/515 (8%) Frame = -3 Query: 6357 PKFA-HNAKFDMEVL-AGAGIKVSGLA---FDTMIAAAMLGKRQ--------GLKDLAFY 6217 P+F HNA FD VL A + + LA DT I A ++ RQ GLK L+ + Sbjct: 89 PRFLIHNAPFDWLVLDAHTPVSMESLAPRTVDTKIKATLIDPRQPQDGGIGTGLKPLSAF 148 Query: 6216 ELKLPEPPTTIEDLIGRGNKQISFXXXXXXXXXXXXXXXALYXXXXXXXXXXXXEAEPAL 6037 + P P T DL S Y P L Sbjct: 149 YVD-PSAPDTQGDLTAVFR---SLGLTKETGWAGIDLRHPTYNLYAGLDVIYTARLNPCL 204 Query: 6036 HDLYYRVEL--PLIE-------VLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQ 5884 + R+ + L+E + M+ G+ LD EY+ L R + + + +Y Sbjct: 205 DAEHARLSIRPTLLEYEHEIAYMCAYMQRAGLALDLEYVDTLRRMLRE---EEEKHLYAA 261 Query: 5883 A-GGPFNINSGQQLNDVLFGRLGIDPRAHGLSKLKSGG-YSITAEVLEELSQL------- 5731 A G ++NSG Q+ + L L++ GG + VL L+ L Sbjct: 262 AMWGVDSVNSGAQVAEALLAM------GETLTQRTDGGALKVDKAVLLPLADLDRDWERI 315 Query: 5730 -----YPIAADILTYRQLTKLKSTYIDALPDLVNPRTGRIHTSYNQLGAATGRLSSNNP- 5569 P+A +L ++ K +TY D + +P GRIH + N L A TGR+S N Sbjct: 316 GAREPNPLAEAVLRAKRAGKWVTTYADRFANNHDPH-GRIHPNINTLQARTGRMSINGDF 374 Query: 5568 NLQNIPVRTEEGREIRRAFVAE-PGWRFVAADYSQIELRVLAHMSGDENLIAAFQQG--- 5401 Q +P IRRA V + P + D+ IE+RVLA ++ + + F G Sbjct: 375 AAQTLP---SSDWMIRRAIVGDAPDHIMGSVDFQAIEMRVLAALADVKRMKDGFVNGGSD 431 Query: 5400 LDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAFGLAQRLG-IERDLARQLID 5224 DIH TA + G+E T K R+V K FG +YG +A++ G E ++AR + + Sbjct: 432 FDIHMYTAQLIKGLEAT---KRDRKVFKGAGFGKVYGGGVATIARQTGATEAEIARAVAE 488 Query: 5223 NLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDLXXXXXXXXXXXXXAINAPIQG 5044 FP I+R + R G V RR+ D +N Q Sbjct: 489 -YDRVFPEIKRASSRWQREARGTGLVTVSVTGRRLPLD--------RNRTYAVVNYQCQS 539 Query: 5043 TAADLMKMAMVNVHRALREQGLRTRLLLQVHDELI 4939 A D++ AM+N +R+ GL + L +HDE++ Sbjct: 540 AARDVLGQAMLN----MRDAGLLDYMKLPIHDEIV 570 >ref|YP_024986.1|DNA polymerase I Length = 633 Score = 92.4 bits (228), Expect = 5e-19 Identities = 111/439 (25%), Positives = 179/439 (40%), Gaps = 34/439 (7%) Frame = -3 Query: 6015 ELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGPFNINSGQQLNDV 5836 E ++ L E G+R+D Y + + + +++Q AG FN NS +Q+ +V Sbjct: 210 ERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQAKMFQLAGREFNPNSPKQVREV 269 Query: 5835 LFGR--LGIDPRAHG--LSKLKSGGYSITAEVLEELSQLYPIAADILTYRQLTKLKSTYI 5668 + G+ G L + +G + A+ L + P+AA +L R K K T++ Sbjct: 270 FGAKEERGVWTSRDGTVLERTATGNPCLDADALRAMKD--PLAAAVLELRSNIKTKDTFL 327 Query: 5667 DALPDLVNPRTGRIHTSYNQL-----GAATGRLSSNNPNLQNIPVRTEE-GREIRRAFVA 5506 A + + GR++ + NQ+ G TGRLS P LQ IP R + I+ AF+ Sbjct: 328 -AKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPALQQIPSRNKRIAAIIKPAFLP 386 Query: 5505 EPGWRFVAADYSQIELRVLAHMSGDEN--LIAAFQQG--LDIHAATASRLFGVEPTAVDK 5338 E G ++ +D + E+R+ AH+ N + A+ + LD+H L G+ A Sbjct: 387 EEGQLWLDSDMASFEVRIFAHLVAAYNPAIARAYAENPELDLHQWVGD-LMGIPRNASYS 445 Query: 5337 NQRRVAKTVVFGVIYGISAFGLAQRLGI----------ERDL---------ARQLIDNLF 5215 Q AK + G+I+ +A LG+ + DL A+ +I Sbjct: 446 GQAN-AKQMNLGMIFNRGDGAVADSLGMPWEWCEFTDKKGDLIRYKKAGPEAKAVIAAYH 504 Query: 5214 AQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDLXXXXXXXXXXXXXAINAPIQGTAA 5035 Q G++ + + + G++QT GRR A IQ TAA Sbjct: 505 TQIQGVKTLATRAQKIAEERGWIQTAHGRR--------LRFPNGYKSYKASGILIQATAA 556 Query: 5034 DLMKMAMVNVHRALREQGLRTRLLLQVHDELIXXXXXXXXXXXARLLRDVMSSVYRDLVV 4855 D K + + AL G ++L HD R+ + V R V Sbjct: 557 DENKENWLRIEDALGSDG---SMILNTHDSYSMSVDENWKPIWERVKKAVERQTLR---V 610 Query: 4854 PLSVNLE-VGPNWDEMSPL 4801 PL + + VG NW E L Sbjct: 611 PLLLEFDGVGKNWAEAKGL 629 >ref|YP_024429.1|DNA polymerase I Length = 633 Score = 92.4 bits (228), Expect = 5e-19 Identities = 111/439 (25%), Positives = 179/439 (40%), Gaps = 34/439 (7%) Frame = -3 Query: 6015 ELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGPFNINSGQQLNDV 5836 E ++ L E G+R+D Y + + + +++Q AG FN NS +Q+ +V Sbjct: 210 ERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQAKMFQLAGREFNPNSPKQVREV 269 Query: 5835 LFGR--LGIDPRAHG--LSKLKSGGYSITAEVLEELSQLYPIAADILTYRQLTKLKSTYI 5668 + G+ G L + +G + A+ L + P+AA +L R K K T++ Sbjct: 270 FGAKEERGVWTSRDGTILERTATGNPCLDADALRAMKD--PLAAAVLELRSNIKTKDTFL 327 Query: 5667 DALPDLVNPRTGRIHTSYNQL-----GAATGRLSSNNPNLQNIPVRTEE-GREIRRAFVA 5506 A + + GR++ + NQ+ G TGRLS P LQ IP R + I+ AF+ Sbjct: 328 -AKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPALQQIPSRNKRIAAIIKPAFLP 386 Query: 5505 EPGWRFVAADYSQIELRVLAHMSGDEN--LIAAFQQG--LDIHAATASRLFGVEPTAVDK 5338 E G ++ +D + E+R+ AH+ N + A+ + LD+H L G+ A Sbjct: 387 EEGQLWLDSDMASFEVRIFAHLVAAYNPAIARAYAENPELDLHQWVGD-LMGIPRNASYS 445 Query: 5337 NQRRVAKTVVFGVIYGISAFGLAQRLGI----------ERDL---------ARQLIDNLF 5215 Q AK + G+I+ +A LG+ + DL A+ +I Sbjct: 446 GQAN-AKQMNLGMIFNRGDGAVADSLGMPWEWCEFTDKKGDLIRYKKAGPEAKAVIAAYH 504 Query: 5214 AQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDLXXXXXXXXXXXXXAINAPIQGTAA 5035 Q G++ + + + G++QT GRR A IQ TAA Sbjct: 505 TQIQGVKTLATRAQKIAEERGWIQTAHGRR--------LRFPNGYKSYKASGILIQATAA 556 Query: 5034 DLMKMAMVNVHRALREQGLRTRLLLQVHDELIXXXXXXXXXXXARLLRDVMSSVYRDLVV 4855 D K + + AL G ++L HD R+ + V R V Sbjct: 557 DENKENWLRIEDALGSDG---SMILNTHDSYSMSVDENWKPIWERVKKAVERQTLR---V 610 Query: 4854 PLSVNLE-VGPNWDEMSPL 4801 PL + + VG NW E L Sbjct: 611 PLLLEFDGVGKNWAEAKGL 629 >ref|NP_813726.1|gp11 Length = 624 Score = 92.0 bits (227), Expect = 7e-19 Identities = 140/526 (26%), Positives = 212/526 (40%), Gaps = 53/526 (10%) Frame = -3 Query: 6357 PKFA-HNAKFDMEVL-AGAGIKVSGLA---FDTMIAAAMLGKRQ--------GLKDLAFY 6217 P+F HNA FD VL A A + + LA DT I A ++ RQ GLK L+ + Sbjct: 89 PRFLIHNAMFDWLVLDAHADVSLESLAPRTIDTKIKATLIDPRQPQEGGIGTGLKPLSAF 148 Query: 6216 ELKLPEPPTTIEDLIGRGNKQISFXXXXXXXXXXXXXXXALYXXXXXXXXXXXXEAEPAL 6037 + P P T DL S Y P L Sbjct: 149 YVD-PSAPDTQGDLTAVFR---SLGLTKATGFAGIDLRHPTYNLYAGLDVIYTARLNPCL 204 Query: 6036 HDLYYRVELPLIEVLTD-----------MELTGIRLDQEY---LRELGRHFAQRIADLVE 5899 + R L + LTD M+ G+ LD EY LR + R + A + Sbjct: 205 DVEHER--LGVRAALTDYEHEIAYMCAYMQRAGLVLDLEYVDTLRRMLREEEDKYATIAA 262 Query: 5898 RIYQQAGGPFNINSGQQLNDVLFGRLGIDPRAHGLSKLKSGG-YSITAEVLEELSQL--- 5731 + G ++NSG Q+++ L L++ GG ++ +VL L+ L Sbjct: 263 -----SWGVESVNSGAQVSEALLAM------GETLTETTDGGALKVSKKVLLPLADLDRD 311 Query: 5730 ---------YPIAADILTYRQLTKLKSTYIDALPDLVNPRTGRIHTSYNQLGAATGRLS- 5581 P+A +L ++ K S+Y D + +P GRIH + N L A TGR+S Sbjct: 312 WERIGAREPNPLAEAVLRAKRAGKWVSSYADKFAENHDP-LGRIHPTINTLQARTGRMSI 370 Query: 5580 SNNPNLQNIPVRTEEGREIRRAFVAE-PGWRFVAADYSQIELRVLAHMSGDENLIAAF-- 5410 S + Q +P IRRA + + P + D+ IE+RVLA ++G + F Sbjct: 371 SGDFAAQTLP---SSDWMIRRAVLGDKPDHIVGSVDFQAIEMRVLAALAGVRRMTEGFLD 427 Query: 5409 --------QQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAFGLAQRLGI 5254 G DIH TA + G T K R+V K FG +YG ++++ G Sbjct: 428 PDPDPSVYPDGFDIHMYTARLIKGPNAT---KRDRKVFKGAGFGKVYGGGIKTISRQTGA 484 Query: 5253 -ERDLARQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDLXXXXXXXXXX 5077 E ++AR + + FP I+R + R G V T+ R++ Sbjct: 485 PEHEIARAVAE-YDRVFPEIKRASSKWQREARARGCV-TVTPTGRIL-------PLDRNR 535 Query: 5076 XXXAINAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDELI 4939 +N Q TA D++ AM+N +R+ GL + L +HDE++ Sbjct: 536 MYAVVNYKCQSTARDVLGQAMIN----MRDAGLLEYMKLPIHDEIV 577 >ref|NP_640280.1|DNA polymerase Length = 661 Score = 79.7 bits (195), Expect = 4e-15 Identities = 115/492 (23%), Positives = 191/492 (38%), Gaps = 22/492 (4%) Frame = -3 Query: 6348 AHNAKFDMEVLAGAGIKVSG-LAFDTMIAAAML------GKRQGLKDLAFYELKLPEPPT 6190 AHNAKFD++ L AG+ S L DTM+A +L GK+ L A + L Sbjct: 93 AHNAKFDIKWLIRAGLDPSRILVADTMLAEYVLTGNLKAGKKGALTLGALAKQYLGVTKD 152 Query: 6189 TIEDLIGRGNKQISFXXXXXXXXXXXXXXXALYXXXXXXXXXXXXEAEPALHDLYYRVEL 6010 + D + RG +S +H Y R L Sbjct: 153 PLVDKLMRGG--VSPRVIPKSLLERRNKSDIFQTRNLWLKLRDEMMERDVIHLFYNRCLL 210 Query: 6009 PLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGPFNINSGQQLNDVLF 5830 VL D+EL G+ LD+E + E ++R+A++ + G N S Q+ + ++ Sbjct: 211 S--PVLADIELNGVHLDKERVCEEHDIASRRMAEVEADLMDMIDGR-NPRSVPQMQEFIY 267 Query: 5829 GRLGIDP-RAHGLSKLKSGGYSITAEVLEELSQLYPIAADILT-YRQLTKLKSTYIDALP 5656 L P + G+ +G + E + Q + D+ + QL S +D Sbjct: 268 DVLKFKPLKKRGVEWRPTGEEVLQFEARTKKQQAF---LDLKKEFAQLNADLSKNLDYFY 324 Query: 5655 DLVNPRTGRI-HTSYNQLGAATGRLSSNN--------PNLQNIPVRTEEGREIRRAFVAE 5503 +V R + + +NQ T RLSS+ P ++I ++ + R Sbjct: 325 GVVTEREDCLFYAQFNQAQTVTHRLSSSGIKTKFEMYPKAKSIQLQNSPRKYKRLYSARN 384 Query: 5502 PGWRFVAADYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRV 5323 P W + D +QIE RV ++ D + G+D+H TAS L + V K+QR Sbjct: 385 PDWYVIEMDGAQIEFRVAGYIGQDTRICQDIVDGVDVHRFTASVLNHCDEEEVTKDQRTD 444 Query: 5322 AKTVVFGVIYGISAFGLAQRLGIERDLARQLIDNLFAQFPGIRRYI---DQTLEFGRQHG 5152 AK F +YG +G ++ + D AQ + + + + T G Sbjct: 445 AKPDTFKPLYG-GQYGTDDQMAYYEAFRNKYQDITQAQQDWLMKVLRNKEITHPTGITFY 503 Query: 5151 YVQTLFGRRRVMEDLXXXXXXXXXXXXXAINAPIQGTA-ADLMKMAMVNVHRALREQGLR 4975 Y +D N P+Q A A+++ +A+V + ++ L+ Sbjct: 504 YPNASMSSSGYCQDF-----------PSVCNYPVQNLATAEIIPIALVAIWHVMKAMKLQ 552 Query: 4974 TRLLLQVHDELI 4939 + L+ VHD +I Sbjct: 553 SFLVNTVHDSVI 564 >ref|NP_943839.1|gp61 Length = 619 Score = 78.6 bits (192), Expect = 8e-15 Identities = 86/347 (24%), Positives = 149/347 (42%), Gaps = 2/347 (0%) Frame = -3 Query: 5973 GIRLDQEYLRELGRHFAQRIADLVERIYQQAGGPFNINSGQQLNDVLFGRLG-IDPRAHG 5797 GI +D+EYL + ++AD + IY ++ G L L + Sbjct: 265 GINVDREYLDR----YLNQVAD-EQAIYTADLAAHGLDGGTGKGAKLVQYLADLGELPQP 319 Query: 5796 LSKLKSGGYSITAEVLEELSQLYPIAADILTYRQLTKLKSTYIDALPDLVNPRTGRIHTS 5617 + G T LE L+++ P+A L+ + K Y+ + TGR H Sbjct: 320 WPRTPKGALRATKADLEYLAEINPLAKAQLSLANIEKTLG-YLTKVSTQAAV-TGRCHPQ 377 Query: 5616 YNQLGA-ATGRLSSNNPNLQNIPVRTEEGREIRRAFVAEPGWRFVAADYSQIELRVLAHM 5440 LGA ATGR+S +P LQ P + R + + G + D+SQIE +A+M Sbjct: 378 VATLGASATGRMSYGSPELQQFP-------KDARPILCDDGDGLTSIDWSQIEPVTMANM 430 Query: 5439 SGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAFGLAQRL 5260 + D + +AA++ G D++ G++ R +K V+ +YG LA + Sbjct: 431 ARDIDFLAAYEAGEDLYGPIMLAA-GID--------RPTSKVVLLSSMYGSGIAKLAALI 481 Query: 5259 GIERDLARQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDLXXXXXXXXX 5080 G + Q+ +FA +++ + E Q G V T GR +++ Sbjct: 482 GHTEESTAQIKRQMFAAMKRSAKWMVKVEEVAAQFGRVITAGGRILPVDE---------G 532 Query: 5079 XXXXAINAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDELI 4939 A+N +QG+A D++ +V ++R +G+ L L +HDE++ Sbjct: 533 GIFKAVNYTVQGSAYDVLANTIVEMYR----RGMTDELYLAMHDEVV 575 >ref|NP_817817.1|gp56 Length = 609 Score = 77.0 bits (188), Expect = 2e-14 Identities = 78/282 (27%), Positives = 124/282 (43%), Gaps = 2/282 (0%) Frame = -3 Query: 5778 GGYSITAEVLEELSQLYPIAADILTYRQLTKLKSTYIDALPDLVNPRTGRIHTSYNQLGA 5599 G S E LE L +P+AA Q K+ Y++ + TGR H LGA Sbjct: 316 GAPSAAKEHLETLD--HPVAAAQRALAQSDKVLG-YLEKVSRQAAV-TGRCHPQVAILGA 371 Query: 5598 -ATGRLSSNNPNLQNIPVRTEEGREIRRAFVAEPGWRFVAADYSQIELRVLAHMSGDENL 5422 ATGR+S +P LQ P + R + + G + D++QIE +A M+GD Sbjct: 372 SATGRMSYGSPELQQFP-------KDARPIIVDDGQGLTSVDWAQIEPVTMALMAGDREF 424 Query: 5421 IAAF-QQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAFGLAQRLGIERD 5245 +A F + D++ R G++ R +AK ++ +YG A +A+R+G + Sbjct: 425 LAPFFENDADLYEPIM-RACGID--------RPMAKVILLATMYGQGARSMARRIGHTEE 475 Query: 5244 LARQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDLXXXXXXXXXXXXXA 5065 A Q+ + A P R ++ + HG + T GR ++ A Sbjct: 476 SAAQIRRQMLAAMPASRDFMAKVESIAITHGRIVTGGGRILPVDQ---------QGSYRA 526 Query: 5064 INAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDELI 4939 +N QG+A D++ +V L E GL + L +HDEL+ Sbjct: 527 VNYICQGSAYDVLAHTIVR----LDEAGLSGHVQLAMHDELV 564 >ref|NP_064753.1|RP DNA pol Length = 580 Score = 75.1 bits (183), Expect = 9e-14 Identities = 97/377 (25%), Positives = 145/377 (38%), Gaps = 24/377 (6%) Frame = -3 Query: 5871 FNINSGQQLNDVLFGRLGIDPRAHGLSKLKSGG-YSITAEVLEELSQLYPIAADILTYRQ 5695 FN+ S Q+N L RLG P K KSG Y I E L + P A L + Sbjct: 236 FNLGSPAQVNKRL-DRLGWKPTV----KTKSGNSYKICPENLATIPDTAPEAVKGLKAWK 290 Query: 5694 LT----KLKSTYIDALPDLVNPRTGRIHTSYNQLGAATGRLSSNNPNLQNIP-------- 5551 + KL ++ + TGR+H GA T R + PN+ NIP Sbjct: 291 VLETRWKLAQEWLQK-----SQETGRVHGRVILTGAVTHRAAHQGPNMANIPSVPHGKDG 345 Query: 5550 ----VRTEEGREIRRAFVAEPGWRFVAADYSQIELRVLAHMSGDENLIAAFQQGLDIHAA 5383 + G E R+AF G V D + I+LRVLAH D G DIH Sbjct: 346 ILWKMEGMYGAECRQAFKVPEGKLLVGTDAAGIQLRVLAHYMNDPIYTEQVIDG-DIHT- 403 Query: 5382 TASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAFGLAQRLGIERDLARQLIDNLFAQFP 5203 F E R AKT ++ + G +A LG A + + N + P Sbjct: 404 -----FNKEALGRYCKDRPTAKTFIYAFLLGAGTGMIASILGCNNRQANEAMANFYEAIP 458 Query: 5202 GIRRYIDQTLEFGRQHGYVQTLFGR-RRVMEDLXXXXXXXXXXXXXAINAPIQGTAADLM 5026 +++ Q + G+++ L GR R+ D A++ +QG +M Sbjct: 459 SLKKLKSQASQ-AASMGWMKGLDGRVLRIGSD------------HLALSVYLQGGETVIM 505 Query: 5025 KMAMVNVHRALREQGLRTRLLLQVHDELIXXXXXXXXXXXARLLRDVMSSVYRD------ 4864 ++A V R +++G+ + VHDE A+ L ++ +D Sbjct: 506 RLANVFWQRQAKKEGINFKQCAWVHDE----WQTEVDEDQAQRLGEIQVQAIKDAGTFFK 561 Query: 4863 LVVPLSVNLEVGPNWDE 4813 L P+ ++G NW E Sbjct: 562 LNCPMDGEAKIGKNWLE 578 >ref|NP_858986.1|DNA polymerase lacking N-terminal exonuclease domain Length = 794 Score = 74.3 bits (181), Expect = 2e-13 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 15/211 (7%) Frame = -3 Query: 5757 EVLEELSQLYPIAADILTYRQLTKLKSTYIDALPDLVNPRTGRIHTSYNQLGAATGRLSS 5578 E +++ + I D+ TY ++ + LV G +H + TGRLSS Sbjct: 399 EFVQQYAAQARITKDLGTYYYTVDPETGETKGMLSLVGS-DGIVHHQLQMVNTVTGRLSS 457 Query: 5577 NNPNLQNIPVRTEEGREIRRAFVAE-PGWRFVAADYSQIELRVLAHMSGDENLIAAFQQG 5401 PNLQN+P + E++ FV+ PG V +D++ +E+ V ++SGD LIA + G Sbjct: 458 ALPNLQNLPKGDKS--EVKTLFVSRFPGGFIVQSDFTALEIYVQGNLSGDIALIADLRAG 515 Query: 5400 LDIHAATASRLFGVE-----PTAVDK---------NQRRVAKTVVFGVIYGISAFGLAQR 5263 LD+H ++ GV A DK ++R AK F YG A +A Sbjct: 516 LDMHCKRLAQKEGVSYDYVFERAKDKKHIEYIVWNSKRSKAKGFSFQRAYGAGAAAIAAA 575 Query: 5262 LGIERDLARQLIDNLFAQFPGIRRYIDQTLE 5170 G+ D +++I +PGI Y +T++ Sbjct: 576 TGMTVDEVKEMIRIEDEMYPGIPEYNKRTMK 606 >ref|NP_848283.1|DNA polymerase Length = 704 Score = 71.2 bits (173), Expect = 1e-12 Identities = 72/250 (28%), Positives = 104/250 (41%), Gaps = 19/250 (7%) Frame = -3 Query: 5634 GRIHTSYNQLGAATGRLSSNNPNLQNIP-VRTEEGREIRRAFVAE--------PGWRFVA 5482 G+IH S N GA TGR + PNL IP VR+ G + R AF AE W Sbjct: 414 GKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDEITGKPWVQAG 473 Query: 5481 ADYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFG 5302 D S +ELR LAH +A F G H + A + R AKT ++G Sbjct: 474 IDASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYG 527 Query: 5301 VIYGISAFGLAQRLGIERDLARQLIDNLFAQFPGI---RRYIDQTL-EFGRQHGYVQTLF 5134 +YG + Q +G ++ ++L P I R I QTL E + Q + Sbjct: 528 FLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVK 587 Query: 5133 GRRRVMEDLXXXXXXXXXXXXXAINAPIQGTAADLMKMAMVNVHRALREQGLR------T 4972 +RR ++ L A+N +Q A + K+ ++ L E+GL+ Sbjct: 588 WKRRWIKGL-DGRKVHVRSPHSALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDF 646 Query: 4971 RLLLQVHDEL 4942 + VHDE+ Sbjct: 647 AYMAWVHDEI 656 >ref|NP_041982.1|DNA polymerase Length = 704 Score = 71.2 bits (173), Expect = 1e-12 Identities = 72/250 (28%), Positives = 104/250 (41%), Gaps = 19/250 (7%) Frame = -3 Query: 5634 GRIHTSYNQLGAATGRLSSNNPNLQNIP-VRTEEGREIRRAFVAE--------PGWRFVA 5482 G+IH S N GA TGR + PNL IP VR+ G + R AF AE W Sbjct: 414 GKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAG 473 Query: 5481 ADYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFG 5302 D S +ELR LAH +A F G H + A + R AKT ++G Sbjct: 474 IDASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYG 527 Query: 5301 VIYGISAFGLAQRLGIERDLARQLIDNLFAQFPGI---RRYIDQTL-EFGRQHGYVQTLF 5134 +YG + Q +G ++ ++L P I R I QTL E + Q + Sbjct: 528 FLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVK 587 Query: 5133 GRRRVMEDLXXXXXXXXXXXXXAINAPIQGTAADLMKMAMVNVHRALREQGLR------T 4972 +RR ++ L A+N +Q A + K+ ++ L E+GL+ Sbjct: 588 WKRRWIKGL-DGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDF 646 Query: 4971 RLLLQVHDEL 4942 + VHDE+ Sbjct: 647 AYMAWVHDEI 656 >ref|NP_523322.1|gene 5B protein Length = 372 Score = 70.9 bits (172), Expect = 2e-12 Identities = 71/250 (28%), Positives = 104/250 (41%), Gaps = 19/250 (7%) Frame = -3 Query: 5634 GRIHTSYNQLGAATGRLSSNNPNLQNIP-VRTEEGREIRRAFVAE--------PGWRFVA 5482 G+IH S N GA TGR + PNL IP VR+ G + R AF AE W Sbjct: 82 GKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAG 141 Query: 5481 ADYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFG 5302 D S +ELR LAH +A F G H + A + R AKT ++G Sbjct: 142 IDASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYG 195 Query: 5301 VIYGISAFGLAQRLGIERDLARQLIDNLFAQFPGI---RRYIDQTL-EFGRQHGYVQTLF 5134 +YG + Q +G ++ ++L P I R I QTL E + Q + Sbjct: 196 FLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVK 255 Query: 5133 GRRRVMEDLXXXXXXXXXXXXXAINAPIQGTAADLMKMAMVNVHRALREQGLR------T 4972 +RR ++ L A+N +Q A + K+ ++ L E+GL+ Sbjct: 256 WKRRWIKGL-DGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDF 314 Query: 4971 RLLLQVHDEL 4942 + +HDE+ Sbjct: 315 AYMAWIHDEI 324 >ref|NP_523320.1|DNA polymerase Length = 704 Score = 70.9 bits (172), Expect = 2e-12 Identities = 71/250 (28%), Positives = 104/250 (41%), Gaps = 19/250 (7%) Frame = -3 Query: 5634 GRIHTSYNQLGAATGRLSSNNPNLQNIP-VRTEEGREIRRAFVAE--------PGWRFVA 5482 G+IH S N GA TGR + PNL IP VR+ G + R AF AE W Sbjct: 414 GKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAG 473 Query: 5481 ADYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFG 5302 D S +ELR LAH +A F G H + A + R AKT ++G Sbjct: 474 IDASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYG 527 Query: 5301 VIYGISAFGLAQRLGIERDLARQLIDNLFAQFPGI---RRYIDQTL-EFGRQHGYVQTLF 5134 +YG + Q +G ++ ++L P I R I QTL E + Q + Sbjct: 528 FLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVK 587 Query: 5133 GRRRVMEDLXXXXXXXXXXXXXAINAPIQGTAADLMKMAMVNVHRALREQGLR------T 4972 +RR ++ L A+N +Q A + K+ ++ L E+GL+ Sbjct: 588 WKRRWIKGL-DGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDF 646 Query: 4971 RLLLQVHDEL 4942 + +HDE+ Sbjct: 647 AYMAWIHDEI 656 >ref|NP_877458.1|putative DNA directed DNA polymerase Length = 807 Score = 67.8 bits (164), Expect = 1e-11 Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 27/171 (15%) Frame = -3 Query: 5634 GRIHTSYNQLGAATGRLSSNNPNLQNIPVRTEE----GREIRRAFVAEPG--WRFVAADY 5473 G IH S N AT RLSS+ PNLQ +P + E+ G ++ FV+ G DY Sbjct: 458 GIIHHSLNTTATATTRLSSSRPNLQQLPSKDEDDPEAGSRVKEMFVSRFGADGMIGETDY 517 Query: 5472 SQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGV----------EPTAVDKN---- 5335 + +E+ +LA +S D NL+A G D+H RL G + A+ K+ Sbjct: 518 TALEVVMLAALSKDRNLLAKLMAGTDMH---LYRLAGKHNNWNGFDYDQLVAIKKDPNHP 574 Query: 5334 -------QRRVAKTVVFGVIYGISAFGLAQRLGIERDLARQLIDNLFAQFP 5203 R+ K F YG SA G+A G + A++ +DN A FP Sbjct: 575 WHGRMMQARKNIKPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFP 625 >ref|YP_024841.1|Pas55 Length = 1415 Score = 65.9 bits (159), Expect = 5e-11 Identities = 93/399 (23%), Positives = 159/399 (39%), Gaps = 14/399 (3%) Frame = -3 Query: 5973 GIRLDQEYLRELGRHFAQRIADLVERIYQQAGGPFNINSGQQLNDVLFGRLGIDP----- 5809 G +DQ L E QR A+ + + + AG P G L G + Sbjct: 1037 GFLVDQPLLTERVAEVDQRKAESLAWLAEHAGVPLANAKGVAYKSPLASTGGKEALEAAL 1096 Query: 5808 RAHGLSKL----KSGGYSITAEVLEELSQLY---PIAADILTYR-QLTKLKSTYIDALPD 5653 RA G + SG + + E ++ L++ Y P +I + ++ +S Y L D Sbjct: 1097 RAAGATSFWRTPNSGQFDTSGEHMKHLAREYHHLPKVREIAKHVFRIVGARSVY-QTLMD 1155 Query: 5652 LVNPRTGRIHTSYNQLGAATGRLSSNNPNLQNIPVRTEEGREIRRA-FVAEPGWRFVAAD 5476 ++P GR+H ATGR S P L + R GR + RA + +PG ++AD Sbjct: 1156 NMSP-DGRVHPKIG-FDQATGRWSVTRPGLTVLGKRG--GRHVERAVLLPDPGEVLMSAD 1211 Query: 5475 YSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVI 5296 SQ+++R +A +S D I ++ D HA A LFG ++R AK + G Sbjct: 1212 LSQVDMRAVAGLSQDLAYIEMLKKD-DPHAEIAKELFGT------ADRREEAKAIGHGWN 1264 Query: 5295 YGISAFGLAQRLGIERDLARQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVM 5116 YG +++ IE L R+ ++ +F + + + + FGR Sbjct: 1265 YGRGIKAISEGQEIEPALVRRFDASMRERFGRLVEWQTEVRAVAEAGQLLDNGFGRLMRA 1324 Query: 5115 EDLXXXXXXXXXXXXXAINAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDELIX 4936 + QG A D+M ++ + R + L Q+HDE++ Sbjct: 1325 DPQRAHTQGPALMG--------QGAARDIMMTGLLRLDRRILPM-----LRAQIHDEIVF 1371 Query: 4935 XXXXXXXXXXARLLRDVMSSVYRDLVVPLSVNLEVGPNW 4819 R + + +S +R + + V+ + G +W Sbjct: 1372 SVPVAEAEEVGRAVVEALSFEWRGVPILADVS-KTGTDW 1409 >ref|NP_052094.1|5B protein Length = 384 Score = 65.5 bits (158), Expect = 7e-11 Identities = 64/233 (27%), Positives = 98/233 (42%), Gaps = 13/233 (5%) Frame = -3 Query: 5634 GRIHTSYNQLGAATGRLSSNNPNLQNIP-VRTEEGREIRRAFVAE--------PGWRFVA 5482 G+IH + N GA TGR + + PNL +P VR+ G + R AF AE W Sbjct: 94 GKIHGAVNPNGAVTGRATHSFPNLAQVPGVRSPYGEQCRSAFGAEHHLDGITGKPWVQAG 153 Query: 5481 ADYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFG 5302 D S +ELR LAH +A F G + + A + R AKT ++G Sbjct: 154 IDASGLELRCLAH------FMARFDNGEYANEILNGDIHTKNQNAAELPTRDNAKTFIYG 207 Query: 5301 VIYGISAFGLAQRLGIERDLARQLIDNLFAQFPGI---RRYIDQTL-EFGRQHGYVQTLF 5134 +YG + Q +G ++ ++L P I R I Q+L G Q + Sbjct: 208 FLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALREAIQQSLVNSSAWIGGEQKVQ 267 Query: 5133 GRRRVMEDLXXXXXXXXXXXXXAINAPIQGTAADLMKMAMVNVHRALREQGLR 4975 +RR ++ L A+N +Q A + K+ ++ L E+GL+ Sbjct: 268 WKRRWIKGL-DGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLIEKGLK 319 >ref|NP_052093.1|DNA polymerase Length = 704 Score = 65.5 bits (158), Expect = 7e-11 Identities = 64/233 (27%), Positives = 98/233 (42%), Gaps = 13/233 (5%) Frame = -3 Query: 5634 GRIHTSYNQLGAATGRLSSNNPNLQNIP-VRTEEGREIRRAFVAE--------PGWRFVA 5482 G+IH + N GA TGR + + PNL +P VR+ G + R AF AE W Sbjct: 414 GKIHGAVNPNGAVTGRATHSFPNLAQVPGVRSPYGEQCRSAFGAEHHLDGITGKPWVQAG 473 Query: 5481 ADYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFG 5302 D S +ELR LAH +A F G + + A + R AKT ++G Sbjct: 474 IDASGLELRCLAH------FMARFDNGEYANEILNGDIHTKNQNAAELPTRDNAKTFIYG 527 Query: 5301 VIYGISAFGLAQRLGIERDLARQLIDNLFAQFPGI---RRYIDQTL-EFGRQHGYVQTLF 5134 +YG + Q +G ++ ++L P I R I Q+L G Q + Sbjct: 528 FLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALREAIQQSLVNSSAWIGGEQKVQ 587 Query: 5133 GRRRVMEDLXXXXXXXXXXXXXAINAPIQGTAADLMKMAMVNVHRALREQGLR 4975 +RR ++ L A+N +Q A + K+ ++ L E+GL+ Sbjct: 588 WKRRWIKGL-DGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLIEKGLK 639 >ref|NP_775225.1|DNA polymerase1 Length = 545 Score = 61.2 bits (147), Expect = 1e-09 Identities = 55/192 (28%), Positives = 86/192 (44%) Frame = -3 Query: 5520 RAFVAEPGWRFVAADYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVD 5341 R +V E FV D + +ELR+LA GD + G D+H TA+++ PT D Sbjct: 320 RVYVPENQLIFVGYDGAGLELRMLASYIGDPDYTREVVDG-DVH--TANQIAAGLPTRDD 376 Query: 5340 KNQRRVAKTVVFGVIYGISAFGLAQRLGIERDLARQLIDNLFAQFPGIRRYIDQTLEFGR 5161 AKT ++ IYG + Q +G R +L + P + + I++ + Sbjct: 377 ------AKTFIYAFIYGAGDAKIGQIIGGTRADGARLREQFLKANPELAKLIERVKQEA- 429 Query: 5160 QHGYVQTLFGRRRVMEDLXXXXXXXXXXXXXAINAPIQGTAADLMKMAMVNVHRALREQG 4981 + GY+ L GR+ M A+N +Q A +MK AMV + +R G Sbjct: 430 ERGYLVGLDGRKLTMR----RSESGEVMVHKALNTLLQAAGAIVMKWAMVILDEKVRRAG 485 Query: 4980 LRTRLLLQVHDE 4945 L+ +L +HDE Sbjct: 486 LKAWKVLDIHDE 497 >ref|NP_853574.1|gp14 Length = 849 Score = 61.2 bits (147), Expect = 1e-09 Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 9/231 (3%) Frame = -3 Query: 5607 LGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAEPGWRFVAADYSQIELRVLAHMSGDE 5428 +G +T R+ + N+ NIP R +R F+A G + D + +ELRVL+H D Sbjct: 531 IGTSTFRM--RHRNVVNIPARGLY--PLRDLFIAGKGKMILGCDGAGLELRVLSHFMNDP 586 Query: 5427 NLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAFGLAQRLGIER 5248 G DIH T ++L P +R +AKT ++ +YG LA G+ Sbjct: 587 EYQEIVLHG-DIH--THNQLKAGLP------KRDMAKTFIYAFLYGSGIANLAAVCGVTE 637 Query: 5247 DLARQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQT---LFGRRRVMEDLXXXXXXXXXX 5077 D ++++ + P + R + + G + GY+Q +GR R+ Sbjct: 638 DEMKEVVARFEIELPSLARLRENVIAAGNKFGYLQAPDGHWGRIRM--------SGGELK 689 Query: 5076 XXXAINAPIQGTAADLMKMAMVNVHRALREQGLRTRLL------LQVHDEL 4942 +N +Q T + MK A+V +R +G+ L VHDE+ Sbjct: 690 EHTMLNVLLQMTGSLCMKYALVKAFAVMRREGVALDNLGNPCGVANVHDEI 740 >ref|NP_795675.1|putative DNA polymerase A domain Length = 640 Score = 52.8 bits (125), Expect = 5e-07 Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 40/251 (15%) Frame = -3 Query: 5853 QQLNDVLFGRLGID---PRAHGLSKLKSGGYSIT----AEVLEELSQLYPIAADILTYRQ 5695 + L+ L G+D R L LK GYS + A+V +EL +L + Sbjct: 224 ESLSGELKALTGLDNPNSRTQLLPWLKEHGYSASGLTKADVEKELKTAEGELKRVLELKL 283 Query: 5694 LTKLKSTYIDALPDLVNPRTGRIHTSYNQLGAA-TGRLSSNNPNLQNIPVR----TEEGR 5530 T + S + GR+H GA+ TGR + +QN+ ++ R Sbjct: 284 QTAMSSLKKYEAMERARCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAR 343 Query: 5529 E------------------------IRRAFVAEPGWRFVAADYSQIELRVLAHMSGDENL 5422 E +R A VA+ G F +D+S IE RV+A +G++ Sbjct: 344 EYVKKRDIDAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWR 403 Query: 5421 IAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAFGLAQ----RLGI 5254 + F I+ A+AS++FG+ +DK R+ K + Y L Q +G+ Sbjct: 404 LDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGALNMGV 463 Query: 5253 ERDLARQLIDN 5221 + + + L+D+ Sbjct: 464 KEEELQGLVDD 474 >ref|NP_919002.1|putative DNA polymerase I Length = 693 Score = 51.6 bits (122), Expect = 1e-06 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 12/110 (10%) Frame = -3 Query: 5526 IRRAFVAEPGWRFVAADYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTA 5347 +R A A G+ FV D S IE V+A ++ + L+ F++G + A+RL+GVE Sbjct: 385 VRSAIYAPEGYEFVTCDLSSIETVVIAWLADCQPLLNVFREGRCAYREFATRLYGVEYPE 444 Query: 5346 VDKNQRRVAKTVVFGVIYGISA------------FGLAQRLGIERDLARQ 5233 V R ++K V G Y + +G A+ +GI D++RQ Sbjct: 445 VTSQMRTMSKPAVLGAGYRLGGGDLSHEGKRTGLWGYAENMGI--DMSRQ 492 >ref|NP_705685.1|gp62 Length = 655 Score = 47.8 bits (112), Expect = 2e-05 Identities = 28/81 (34%), Positives = 45/81 (55%) Frame = -3 Query: 5532 REIRRAFVAEPGWRFVAADYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEP 5353 R++ RA +PG V AD S IE RV ++ D + AF++G+D + A ++ +E Sbjct: 374 RQLFRA--TKPGHVLVGADLSGIEARVAPWLANDVPKLEAFEKGIDGYKLAAMDIYSIEY 431 Query: 5352 TAVDKNQRRVAKTVVFGVIYG 5290 AV K+QR+V K + +G Sbjct: 432 DAVTKDQRQVGKAADLALGFG 452 >ref|NP_958166.1|gp61 Length = 656 Score = 46.6 bits (109), Expect = 3e-05 Identities = 27/81 (33%), Positives = 45/81 (55%) Frame = -3 Query: 5532 REIRRAFVAEPGWRFVAADYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEP 5353 R++ RA +PG V AD S IE R+ ++ D + AF++G+D + A ++ +E Sbjct: 375 RQLFRA--TKPGHVLVGADLSGIEARMAPWLANDVPKLEAFEKGIDGYKLAAMDIYSIEY 432 Query: 5352 TAVDKNQRRVAKTVVFGVIYG 5290 AV K+QR+V K + +G Sbjct: 433 DAVTKDQRQVGKAADLALGFG 453 >ref|NP_944374.1|gp66 Length = 655 Score = 46.6 bits (109), Expect = 3e-05 Identities = 27/81 (33%), Positives = 45/81 (55%) Frame = -3 Query: 5532 REIRRAFVAEPGWRFVAADYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEP 5353 R++ RA +PG V AD S IE R+ ++ D + AF++G+D + A ++ +E Sbjct: 374 RQLFRA--TKPGHVLVGADLSGIEARMAPWLANDVPKLEAFEKGIDGYKLAAMDIYSIEY 431 Query: 5352 TAVDKNQRRVAKTVVFGVIYG 5290 AV K+QR+V K + +G Sbjct: 432 DAVTKDQRQVGKVADLALGFG 452 >ref|YP_024952.1|putative DNA polymerase protein Length = 681 Score = 46.2 bits (108), Expect = 4e-05 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 7/90 (7%) Frame = -3 Query: 5526 IRRAFVAEPGWRFVAADYSQIELRVLAHMSGDENLIAAFQQ-----GLDIHAATASRLFG 5362 +R VA G R +D S IE R A ++G++ + AF+ G D++ +R FG Sbjct: 361 VRGTIVAPDGKRLYVSDLSNIEGRDAAWLAGEKWKLQAFRDFDAGIGADLYKLAYARAFG 420 Query: 5361 VEPTAVDKNQRRVAKTVVFGVIY--GISAF 5278 V AVDK R++ K + + Y G+ AF Sbjct: 421 VAVEAVDKYMRQLGKVMELALAYEGGVGAF 450 >ref|NP_813764.1|putative DNA polymerase Length = 709 Score = 43.5 bits (101), Expect = 3e-04 Identities = 62/244 (25%), Positives = 89/244 (36%), Gaps = 43/244 (17%) Frame = -3 Query: 5892 YQQAGGPFNIN----------SGQQLNDVLFGRLGIDPRAHGLSKLKSGGYS-------- 5767 Y + GG +N N +G V F R H + LK G+ Sbjct: 289 YPKVGGVYNANGKTKDKRETFAGAPYTPVEFVTFNPTSRPHIIKMLKKAGWEPSEFTDNG 348 Query: 5766 ---ITAEVLEELSQLYP---IAADILTYR--QLTKLKSTYIDALPDLVNPRTGRIHTSYN 5611 + EVLE + P A +++ R L + + +I + + G +H S N Sbjct: 349 APKVDDEVLEHVRVDDPEKQAAIELIQKRIGMLAEGDNAWIKLVGE-----DGAMHGSIN 403 Query: 5610 QLGAATGRLSSNNPNLQNIP-VRTEEGREIRRAFVA-----EPGWR---FVAADYSQIEL 5458 GA TGR + PN+ +P G R F A GW V D S +EL Sbjct: 404 PNGAGTGRATHAYPNMGQVPSASATYGPHCRALFGATHAKKRRGWEKVVQVGTDASGLEL 463 Query: 5457 RVLAHMSG--DENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQ------RRVAKTVVFG 5302 R L H DE A DIH ++ DK+ R +AKT ++ Sbjct: 464 RCLGHYGAPFDEGRYADTVLNGDIHWVNGKAAGIIKFDERDKHNEEHERVRGIAKTFIYA 523 Query: 5301 VIYG 5290 +YG Sbjct: 524 FLYG 527 >ref|YP_024759.1|p31 Length = 801 Score = 40.8 bits (94), Expect = 0.002 Identities = 73/324 (22%), Positives = 121/324 (37%), Gaps = 45/324 (13%) Frame = -3 Query: 6024 YRVELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGP-FNINSGQQ 5848 Y+ + PL+ G R++ E +L +R+ ++ + P FN S Q Sbjct: 336 YKKQFPLVYPSLYGAFEGFRVNNETRLKLVEKAEERLESALKDLRIMTDDPEFNPGSPDQ 395 Query: 5847 LNDVLFGRLGID--PRAHGLSKLKSGGYSITAEVLEELSQLYPIAAD-ILTYRQLTKLKS 5677 +++ L+ LG PRA SK + A ++ + +D + Y K S Sbjct: 396 VSEFLYEVLGAKRPPRAKSKSKTDKKSRAFVASQ----HPIFALFSDRVNNYSLEKKALS 451 Query: 5676 TYIDALPDLVNPRTGRIHTSYNQLGAATGRLSSN------NPNLQNIPVRTEEGREIRRA 5515 TY R+ S + G TGR +S +QN PV +E E Sbjct: 452 TYFS-----FRQWNSRLLYSLDPFGTDTGRFASRASAAWIGTQIQNQPVYAKEMYEPDDG 506 Query: 5514 FVAEPGWRFVAADYSQIELRVLAHMSGDENLIAAF------QQG--LDIHAATASRLFGV 5359 ++A D+S+ E A++S LI A +G D + F + Sbjct: 507 YIA------FEMDFSKAEAICTAYLSRCSALIKALCFPDLDNEGNKKDFYKVLGELFFHM 560 Query: 5358 EPTAVDKNQR-RVAKTVVFGVIYGI-------------SAFGLAQRLGI----------- 5254 E V K R +V K +V G Y + + F A+ LG+ Sbjct: 561 EYETVTKEFRNKVLKKIVHGTNYMMGPETFIDNLDDIQTLFLAAKILGVVLTLNPKAPKE 620 Query: 5253 --ERDLARQLIDNLFAQFPGIRRY 5188 +D A+QL+D FP ++++ Sbjct: 621 KTPKDFAKQLLDAYHIPFPEVQQW 644 >ref|NP_958251.1|hypothetical protein Length = 359 Score = 33.5 bits (75), Expect = 0.29 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 10/105 (9%) Frame = +1 Query: 1324 ITKPGQEYNLQPFFWTP----LRDAQAVRYRQEVFQDLEKAPILEAIKQFAEGMRVVRRY 1491 I + + Y +P WTP + + + +E++ L L + G RR Sbjct: 51 IERAAELYGGEPEAWTPQGSKIEQFRVITEARELYSILPPGDPLSQANELWTGGGCARRC 110 Query: 1492 LAMMEQLN------FADHRKGWLLEAALVYCDTVTTLARHLVDLP 1608 + EQL A+H +GW + A C + +A L D+P Sbjct: 111 DGVTEQLTRKPCLCLAEHGEGWHEQPAGTVCKPTSRIAVMLADMP 155 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,025,793 Number of Sequences: 14420 Number of extensions: 715604 Number of successful extensions: 2065 Number of sequences better than 0.5: 40 Number of HSP's better than 0.5 without gapping: 1738 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2018 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 3221131680 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig916 (6721 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_695118.1|putative tail protein 33 0.30 ref|NP_690762.1|ORF29 33 0.39 >ref|NP_695118.1|putative tail protein Length = 1517 Score = 33.5 bits (75), Expect = 0.30 Identities = 23/86 (26%), Positives = 40/86 (46%) Frame = +1 Query: 3232 ITSATRRSTGNPPKSGLQAIRTPRKSRSSGWAKSEGGSLIESGARKSGPAIACKIRAISA 3411 + SA + N +S AI T + G + G + S +G AI ++ I++ Sbjct: 836 VISAALQGIANIIQSVGTAISTAAQGIGQGIQSALEG--VASIISATGAAIGAALQGIAS 893 Query: 3412 TVRAIGPSIANGRKGVGSGQTGTLPG 3489 V+++G SI+ KG+G+G G Sbjct: 894 VVQSVGTSISTAAKGIGNGIKSAFEG 919 >ref|NP_690762.1|ORF29 Length = 181 Score = 33.1 bits (74), Expect = 0.39 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Frame = +1 Query: 1873 GTTGPHGTAHNTSDPNCIGRRTITIDQSTTKIVTQLVDGNAAKAKQHLN--ISRKIDDIK 2046 G GP G + DP I +IT + K V G + +HLN I++ +D++K Sbjct: 100 GEQGPQGEKGDKGDPAVIEESSITFEMLAEKSVRSKNIGTGSVMPEHLNSEITKVLDELK 159 Query: 2047 GTLN 2058 +N Sbjct: 160 QKMN 163 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,195,989 Number of Sequences: 14420 Number of extensions: 822201 Number of successful extensions: 2321 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1928 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2319 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3277053336 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig917 (6834 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046877.1|putative non-heme haloperoxidase 48 2e-05 ref|NP_817650.1|gp61 47 3e-05 ref|NP_037676.1|tail length tape measure protein 33 0.40 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 47.8 bits (112), Expect = 2e-05 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Frame = -1 Query: 5040 ILIHGWSSSSFAMSPLIPLLSRR-FRCIAVDLPGYGESPPLRERATIGRYAQIIGRLITG 4864 + +HG S S+ A ++ L+ FR IA+D +G S L T+ ++ + + Sbjct: 26 VFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTGHTVEDMTRVTLKTLDE 85 Query: 4863 LSEHPAVLVGHSMGGMISATLALQIPQLVDRMVLL 4759 L H A+ GHSMGG + +A + P V VLL Sbjct: 86 LDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLL 120 >ref|NP_817650.1|gp61 Length = 274 Score = 47.0 bits (110), Expect = 3e-05 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Frame = -1 Query: 5040 ILIHGWSSSSFAMSPL-IPLLSRRFRCIAVDLPGYGESPPLRERATIGRYAQIIGRLITG 4864 + +HG + S+ A L I L R F A+D +G + L T+ ++ R + Sbjct: 28 VFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFGHTVEEMTRVTLRALDA 87 Query: 4863 LSEHPAVLVGHSMGGMISATLALQIPQLVDRMVLL 4759 L AV VGHSMGG + A +A + P+ V +LL Sbjct: 88 LGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILL 122 >ref|NP_037676.1|tail length tape measure protein Length = 806 Score = 33.1 bits (74), Expect = 0.40 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Frame = +2 Query: 2903 GAIYNVGDDEPLRLIDLVSEVRRRLGMLPPRTFDPNVGLRAGIDRSVIGALTASVRLSNA 3082 G + + + + RL L EV R N +A + + + A A+++ N Sbjct: 441 GKLQGLNETQKKRLASLAQEVDRL-----------NAVKKANEENAKVAAFVANLQEQNE 489 Query: 3083 RMRHDLGIELHYPGL----RYWIEERLPLE 3160 R DLG+++H GL R + ERL +E Sbjct: 490 NARADLGVDIHGAGLGDKQRERLRERLSIE 519 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,062,135 Number of Sequences: 14420 Number of extensions: 814128 Number of successful extensions: 2376 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 1938 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2376 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3335352974 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig918 (5637 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818250.1|gp199 177 1e-44 ref|NP_046685.1|putative DNA polymerase 99 6e-21 ref|NP_818618.1|gp80 85 1e-16 >ref|NP_818250.1|gp199 Length = 1131 Score = 177 bits (449), Expect = 1e-44 Identities = 143/483 (29%), Positives = 228/483 (47%), Gaps = 17/483 (3%) Frame = -3 Query: 5596 DEIPLDDPKVFEALGRGETKNVFQLESAGMTRYLMQLKPTRVEDLYAMVALYRPGPLEQI 5417 +E L+DP +++ + RG+T +FQ+ + T+ M+ +P V D+ + ++ RPG + ++ Sbjct: 647 EERYLNDPAIYDQIDRGQTAGLFQVNTPAGTKLAMRFRPRSVVDMADLASINRPG-VTRV 705 Query: 5416 P----VYIQNKNNPSQIRYLHPVLEPILS-----DTYGVIVYQEQIMQLLQTVADYTLGQ 5264 P YI+ ++ Q+ Y HP++E I +TYG++VYQEQ+++ + +A +T G+ Sbjct: 706 PGLLDKYIERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGE 765 Query: 5263 AYIVIKAISKKNRELMAENEAIFKQGCQ------RKGISKEIADQLWELILPFAGYSFNR 5102 A + K I KK E++ E E F GC +G ++++AD++W+ + Y+FN+ Sbjct: 766 AERLRKGIGKKKMEIINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGAYAFNK 825 Query: 5101 PHATLYGLLSYQTAWLKVNYPVEYMTAVLTGAGGVIEDVTKAAL-EARRLGVAVLPPDVN 4925 H Y L Q AW+K Y E++T L + D T L E R+ AVLPPDVN Sbjct: 826 SHGVGYALQPCQEAWVKHYYFDEFITGCLV----IHTDKTIRFLRECRQRKRAVLPPDVN 881 Query: 4924 RSHKGFTIEPLAQPLPPGVTHQRGIRFGLMAIKNVGEGPVEAIIAAREAGGPFQSLEDLC 4745 +S GFT+ GIRFGL I +G+ + I+A R PF+ L+D Sbjct: 882 QSGAGFTLT------------DEGIRFGLTDISGIGDAAMPDILANR----PFKDLDDFL 925 Query: 4744 ARVDRH-ALNKRTLESLIKAGALDSLPGTRRQKLAILDQAVSAGIEAQKAREIGQSSLFD 4568 AR + K +++LIK GA D G RQ + G+ A + + SL + Sbjct: 926 ARASKSGGAKKGVVDALIKVGAFD-FTGEHRQVMLEKVYRHRRGLSAPV--KWAKMSLDE 982 Query: 4567 IFGEATTANPVVARIPLPLIVESPADQKEVLLWEKELLGLNISDDPIAKALEGVDLSGAT 4388 E V P V + D + + E E+LG +S DP+AK +D Sbjct: 983 QVAEIAAKRRVK---PEDYPVYNFEDPQFIHDLEVEMLGTFVSYDPMAKYARMIDGECIR 1039 Query: 4387 ELGSIDAEHIGETLTFVGVLSGVRRIATKKGETMLVANLEDLTGSIEIVVFPKVLAKYAD 4208 D G+ G L R K G+ M + EI+ F A+ Sbjct: 1040 HPMDYDDFEPGDRFCVGGKLVKARTHRQKNGKQMAFLAVHWNEEDFEILAFADAWARCQP 1099 Query: 4207 LLQ 4199 LL+ Sbjct: 1100 LLK 1102 >ref|NP_046685.1|putative DNA polymerase Length = 1305 Score = 98.6 bits (244), Expect = 6e-21 Identities = 88/360 (24%), Positives = 167/360 (46%), Gaps = 34/360 (9%) Frame = -3 Query: 5629 IEQTTGRRMWLDEIPLDDPKVFEALGRGETKNVFQLESAGMTRYLMQLKPTRVED---LY 5459 +++T + + D I +D K++E G GE ++FQ + + ++++KP + + Sbjct: 657 LKETYNKYIHPDVIEYEDDKLWEMAGNGEIMDLFQFSTEVGHQSVVKVKPKNLLEAAVTN 716 Query: 5458 AMVALYRPGPLEQIPVYIQNKNN-----PSQIRY-----LHPVLEPILSDTYGVIVYQEQ 5309 +++ L G + + Y++ KNN RY V+E L D YGV QE Sbjct: 717 SLMRLMSDGEEQPVDTYVKYKNNLNKWYEEMTRYGLSEKEIRVMERHLKDIYGVADTQEV 776 Query: 5308 IMQLL--QTVADYTLGQAYIVIKAISKKNRELMAENEAIFKQGCQRKGISKEIADQLWEL 5135 +MQ++ + +A++ + ++ + K+I+KK +++ E E +F + + G S + + +W + Sbjct: 777 VMQMVMDKDIANFDIKESNYLRKSIAKKKEDVLKEVEELFFKKGKEIGTSDNLLNYVWNV 836 Query: 5134 ILPFA-GYSFNRPHATLYGLLSYQTAWLKVNY-PVEYMTAVLT-GAGGVIEDVTK----- 4979 GYSF+ H Y +++ Q L Y P+ + TA LT +GG+ + TK Sbjct: 837 QFKRQFGYSFSLLHTLAYSIIALQELNLNYRYNPLYWNTACLTVNSGGIDTEDTKDNKKT 896 Query: 4978 ----------AALEARRLGVAVLPPDVNRSHKGFTIEPLAQPLPPGVTHQRGIRFGLMAI 4829 A R+ G+ + PD+N++ GF + + I FGL + Sbjct: 897 AATNYGKVASAIGNIRQRGIKIDLPDINKADFGFRTD----------INNNSILFGLKGM 946 Query: 4828 KNVGEGPVEAIIAAREAGGPFQSLEDLCARVDRHALNKR-TLESLIKAGALDSLPGTRRQ 4652 +G+ + I+ R P+ D R+ + + K+ + LIK G DS G R++ Sbjct: 947 NGIGDDVIHHIVLNR----PYSDFNDFIERMFKSGIIKKGQVIQLIKGGCFDSF-GNRQE 1001 >ref|NP_818618.1|gp80 Length = 1111 Score = 84.7 bits (208), Expect = 1e-16 Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 13/296 (4%) Frame = -3 Query: 5629 IEQTTGRRMWLDEIPLDDPKVFEALGRGETKNVFQLESAGMTRYLMQLKPTRVEDLYAMV 5450 I+++ G+R+ D+ + + + + Q E + ++P ++L A Sbjct: 633 IKESGGKRVGFTANRFDN--ILKRFRNDDVVGIMQFEGGTTRQVCRNVQPVDFDELAACT 690 Query: 5449 ALYRPGPLE--QIPVYIQNKNNPSQIRYLHPV-LEPILSDTYGVIVYQEQIMQLLQTVAD 5279 AL RPGP Q Y+ KN +HP + ++ T+G IVYQEQIM +L+ +A Sbjct: 691 ALSRPGPYYGGQYTDYVAVKNGEKDWARIHPKGFDRHVAFTFGQIVYQEQIMWILRDLAG 750 Query: 5278 YTLGQAYIVIKAISKKNRELMAEN-EAIFKQGC-QRKGISKEIADQLWELILPFAGYSFN 5105 + + V K I KK E E + F GC Q G+ + A +++ I AGY+FN Sbjct: 751 FDNAEVLRVRKIIGKKLGEFQFEAIKQAFIDGCAQTCGVDPDTALRVFGAIRTAAGYAFN 810 Query: 5104 RPHATLYGLLSYQTAWLKVNYPVEYMTAVLTGAGGVIEDVTKAA-----LEARRLGVAVL 4940 HA Y L++Y K+++ E+ + L G +++ + EA R+G+ Sbjct: 811 IAHAYSYALIAYWQMGFKMDHTTEFFASTLYKNGDGKKEIPRRTAVLQDAEAHRIGIGGW 870 Query: 4939 PPDVNRSHKGFTIEPLAQPLPPGVTHQRG---IRFGLMAIKNVGEGPVEAIIAARE 4781 D+N S + +P H R + G I + E +AI+ R+ Sbjct: 871 --DLNLSGANW------RPYYDHSAHSRNLGTVMPGFQQIPGIAEATAKAILDWRD 918 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,860,129 Number of Sequences: 14420 Number of extensions: 725460 Number of successful extensions: 2335 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 1888 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2325 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2777523857 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig919 (6426 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,347,611 Number of Sequences: 14420 Number of extensions: 784085 Number of successful extensions: 2294 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1903 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2289 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 3157638219 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig920 (8014 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_203461.1|hypothetical protein 35 0.16 >ref|NP_203461.1|hypothetical protein Length = 373 Score = 34.7 bits (78), Expect = 0.16 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 8/87 (9%) Frame = +2 Query: 6395 P*AVSTASIWPGPS------LPLQTMRVSAIGTAPTSDPDTTRPSSVTI*RAGRRPLRSR 6556 P AV+TA+ P+ P+ T APT T P + AG +P + Sbjct: 28 PAAVATAAATAAPAQEATAPTPIATSAAKESPAAPTGG--TEEPGATPAEAAGAKPSEAA 85 Query: 6557 AVPTMVPSENARAAGPSQGSIR--QEW 6631 + T P E A++A P Q +R Q W Sbjct: 86 STATAKPDEPAQSATPKQPEVRAPQSW 112 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,608,733 Number of Sequences: 14420 Number of extensions: 956868 Number of successful extensions: 2707 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 2161 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2707 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 3899758046 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig921 (6588 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542299.1|unknown 36 0.045 >ref|NP_542299.1|unknown Length = 141 Score = 36.2 bits (82), Expect = 0.045 Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 4/76 (5%) Frame = -3 Query: 5638 CALPDRPVDRDGSGGLTSRAW----LHSRGCRQGRSIPASSGCCWSNRSDRHAPSERAVP 5471 C P P+ R + S AW L R + S+ W NR DRHAP Sbjct: 44 CRRPTSPMPRTAASSPISIAWRTKTLRLTSASSARCLTTSANATWLNRKDRHAPPH---- 99 Query: 5470 VRAESGSDRVVRRHQP 5423 + +GS R H P Sbjct: 100 CQNGTGSQHRRRGHDP 115 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,561,043 Number of Sequences: 14420 Number of extensions: 788341 Number of successful extensions: 2345 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1939 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2344 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3209548492 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig922 (5338 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,773,240 Number of Sequences: 14420 Number of extensions: 599994 Number of successful extensions: 1766 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1511 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1766 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2621219757 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig923 (5660 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,608,409 Number of Sequences: 14420 Number of extensions: 676802 Number of successful extensions: 2247 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1913 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2247 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2790028185 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig924 (7304 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_047360.1|ORF348; homologous to eryA gene product in L07626 159 4e-39 ref|YP_164695.1|transposase 157 1e-38 ref|NP_835645.1|putative transposase 62 9e-10 ref|NP_613004.1|hypothetical protein 33 0.43 >ref|NP_047360.1|ORF348; homologous to eryA gene product in L07626 Length = 348 Score = 159 bits (402), Expect = 4e-39 Identities = 101/297 (34%), Positives = 151/297 (50%), Gaps = 19/297 (6%) Frame = +2 Query: 1007 QQAIKNLGAAFKNFFERR--AGYPTHKKKGRD-DSARFDNGPGTFRCDGKCIRLPV-IGW 1174 QQ +K+L A+K F+++ A P K+K DS RF N + + ++LP +GW Sbjct: 20 QQKLKDLHTAWKRCFDKKLAAKAPVWKRKNEGRDSIRFVNFEKYCCLENRRVKLPSGLGW 79 Query: 1175 IRMREALRFTGKPLSATVSRVADRWYVAIPVEIDLPDPVCDNQAAVGVDLGVTTAATLSS 1354 ++ R++ R GK +AT+S++A +WY++ VEI+ +P + VG+D GV ATLS Sbjct: 80 VKFRQSQRVNGKIKNATISQLAGQWYISFQVEIETAEPNHTSTTIVGLDAGVAKLATLSD 139 Query: 1355 GEKLAGPKALQANLEXXXXXXXXXXXKVNGSKNQYKSALKLARLHARIANIRRDWLHKTT 1534 G + Q N + KV S N K K+ LH+RIANIRRD+LHK T Sbjct: 140 GTVFEPVNSFQKNQKKLARLQRQLSRKVKFSNNWQKQKRKIQCLHSRIANIRRDYLHKVT 199 Query: 1535 TRLVRTYGVIGIEDLNV---------------RGMLGNRTLARHIADIGMYEFKRQLQYK 1669 T + + + +I IEDL V R + L R I D G YE +RQL+YK Sbjct: 200 TTVSKNHAMIVIEDLKVSNMSKSAAGTVSQPGRNVRAKSGLNRSILDQGWYEMRRQLEYK 259 Query: 1670 AALYGVEVVEADRWFASSKTCSVCGAVTEQMPLGMRDWVCPACGTDHDRDVNAAKNL 1840 G +V+ + S + C+ CG ++ L + C CG + DVN A+N+ Sbjct: 260 QLWRGGQVLAVPPAYTSQR-CACCGHTAKENRLSQSQFRCQVCGYTANADVNGARNI 315 >ref|YP_164695.1|transposase Length = 387 Score = 157 bits (398), Expect = 1e-38 Identities = 119/381 (31%), Positives = 180/381 (47%), Gaps = 26/381 (6%) Frame = +2 Query: 797 KIELRPTKQQELLLREAVGVARFAYNWALDEWKKQYCAGLTP---NEAALRRQLNAIKRE 967 KI L P+K Q+ L + G RF +N L K +Y + NE + L +K+E Sbjct: 6 KIRLYPSKHQQNQLLQMFGNDRFVWNQMLAMAKARYKNNPSSKFVNEYGMNYLLKQLKQE 65 Query: 968 QFPWMLRVPKSIPQQAIKNLGAAFKNFFERRAGYPTHKKKGRDDSARFDNGPGTFRCDGK 1147 + ++ S Q + NL AFK F+ + GYP + K R + + G T + K Sbjct: 66 -YSFLKESDSSSLQVSNHNLAQAFKTLFKHQGGYP--RFKSRHSAKQSYTGKSTCKIVAK 122 Query: 1148 C-IRLPVIGWIRMREALRFTGKPLS--ATVSRVADRWYVAIPVEIDLPDPVCDNQAAVGV 1318 ++LP +G IR + G + + R+Y+++ VE + P+ A VGV Sbjct: 123 RRVKLPKLGSIRTSKTNILNGCKIKRYTLILEPTGRYYLSLTVEDNSIKPLEKTGAVVGV 182 Query: 1319 DLGVTTAATLSSGEKLAGPK---------ALQANLEXXXXXXXXXXXKVNGSKNQYKSAL 1471 DLGV A S G+K K + Q+ + N + N YK + Sbjct: 183 DLGVADLAITSDGKKYESFKPTYLDKQVRSWQSKFSKRKYIATTEVRQWNHNHNDYKMLV 242 Query: 1472 K-----------LARLHARIANIRRDWLHKTTTRLVRTYGVIGIEDLNVRGMLGNRTLAR 1618 + A A+IAN R+D+LHK TT LV Y VI +EDL + +L N LA+ Sbjct: 243 EDYHNWQRAKRIKACYQAKIANKRKDYLHKITTELVEKYDVIAMEDLRTKNLLKNHHLAK 302 Query: 1619 HIADIGMYEFKRQLQYKAALYGVEVVEADRWFASSKTCSVCGAVTEQMPLGMRDWVCPAC 1798 I++ EF+ L+YK YG +++ + +S+ CS CG + + PL +R+W C C Sbjct: 303 SISNQSWREFRTILEYKCKWYGKQLIVVKPNY-TSQICSSCGYHSGKKPLEIREWTCYKC 361 Query: 1799 GTDHDRDVNAAKNLQRMALSR 1861 GT HDRDVNAA N+ L + Sbjct: 362 GTHHDRDVNAAVNILNKGLEK 382 >ref|NP_835645.1|putative transposase Length = 246 Score = 62.0 bits (149), Expect = 9e-10 Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 6/204 (2%) Frame = +2 Query: 1247 WYVAIPVEIDLPDPVCDNQAAVGVDLGVTTAATLSSGEKLAGPKALQANLEXXXXXXXXX 1426 +Y+ I + ++ P P D +GVDLG+ + ATLS G +G + + Sbjct: 10 YYIGIHINVETPPPE-DEHGWIGVDLGIASIATLSDGTVFSGDQIERVRARYERTRRSLQ 68 Query: 1427 XXKVNGSKNQYKSALKLARLHARIANIRRDWLHKTTTRLVRTYGVIG----IEDLN--VR 1588 G+K K RL R ++ H + R+V G +EDL+ + Sbjct: 69 RKGTRGAKRVLK------RLSGRERRFQQAINHTISRRIVDRAIAEGKGVRLEDLSGIRK 122 Query: 1589 GMLGNRTLARHIADIGMYEFKRQLQYKAALYGVEVVEADRWFASSKTCSVCGAVTEQMPL 1768 + ++ R I Y+ + ++ YK AL GV D + S + C VCG Sbjct: 123 SVRVRKSQRRRIHRWAFYDLRIKIAYKCALAGVPFELIDPRYTSQR-CPVCGHTERANRK 181 Query: 1769 GMRDWVCPACGTDHDRDVNAAKNL 1840 +VC +CG + + DV A N+ Sbjct: 182 SQSKFVCRSCGLEANADVVGAINI 205 >ref|NP_613004.1|hypothetical protein Length = 108 Score = 33.1 bits (74), Expect = 0.43 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -3 Query: 804 SILWVRITRIAGPQSCSWLNWPLCACRT 721 S W R+ R+AG + +WLN PL C T Sbjct: 18 SSFWSRLARLAGKVASNWLNTPLMICAT 45 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,271,828 Number of Sequences: 14420 Number of extensions: 838656 Number of successful extensions: 2738 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 2089 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2724 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3576222531 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig925 (7350 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_612994.1|hypothetical protein 49 1e-05 ref|NP_049482.1|serine 49 1e-05 ref|NP_835600.1|putative glycosyltransferases 40 0.003 ref|NP_445708.1|hypothetical protein 35 0.11 >ref|NP_612994.1|hypothetical protein Length = 348 Score = 48.5 bits (114), Expect = 1e-05 Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 2/152 (1%) Frame = +1 Query: 2887 FLQEAELLRSLSFPNLPVVIDLFAYEGRPTMIMEFVPGKTLEAILREANAPMLEQQVIAY 3066 + EA LL + PN+ V E + M F +L ++++ N + +++I Y Sbjct: 55 YFNEARLLYKHAHPNIVQVQYAAQCESNIYIAMPFYHNGSLNQLMKKNN--LTSREIIRY 112 Query: 3067 GIQLCRVLHYLHTRQPPIIYRDLKPANVILTPDGVLKLIDFGVARRHKAGKTKDTIAMGS 3246 IQ L+++H++ +++ D+KP N++++ L DFG+++ +++ G Sbjct: 113 SIQFLSGLYHIHSKG--LMHFDIKPNNIMISNRNEAMLSDFGLSQLVNE-ESRAAPEFGY 169 Query: 3247 AGYAPPEQYGRGQTD--AASDVYALGATMLHL 3336 + PPE + D D+Y G T+ + Sbjct: 170 HFHVPPEYFSLSTNDYNFTYDIYQAGLTIYRM 201 >ref|NP_049482.1|serine Length = 348 Score = 48.5 bits (114), Expect = 1e-05 Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 2/152 (1%) Frame = +1 Query: 2887 FLQEAELLRSLSFPNLPVVIDLFAYEGRPTMIMEFVPGKTLEAILREANAPMLEQQVIAY 3066 + EA LL + PN+ V E + M F +L ++++ N + +++I Y Sbjct: 55 YFNEARLLYKHAHPNIVQVQYAAQCESNIYIAMPFYHNGSLNQLMKKNN--LTSREIIRY 112 Query: 3067 GIQLCRVLHYLHTRQPPIIYRDLKPANVILTPDGVLKLIDFGVARRHKAGKTKDTIAMGS 3246 IQ L+++H++ +++ D+KP N++++ L DFG+++ +++ G Sbjct: 113 SIQFLSGLYHIHSKG--LMHFDIKPNNIMISNRNEAMLSDFGLSQLVNE-ESRAAPEFGY 169 Query: 3247 AGYAPPEQYGRGQTD--AASDVYALGATMLHL 3336 + PPE + D D+Y G T+ + Sbjct: 170 HFHVPPEYFSLSTNDYNFTYDIYQAGLTIYRM 201 >ref|NP_835600.1|putative glycosyltransferases Length = 484 Score = 40.4 bits (93), Expect = 0.003 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 6/95 (6%) Frame = -3 Query: 6925 GSPDRDGLVAAYQSCDILLFPSRLEGFGIAPAEALACGRPVVTTNVAALPEVVDDGENGF 6746 G R+ + Y D++L S EGFGIA EA CG PVV T + + E + Sbjct: 289 GGFSREEIALLYNGADVVLQLSSNEGFGIASLEASLCGAPVVATMTGGIADQYSLYEMDY 348 Query: 6745 LVA----RDDVAGYAEKV--QILGEDAALRRRFGE 6659 VA D + E+V Q+L + + R+ G+ Sbjct: 349 EVADGSDEDIICKIYEEVHRQVLNQYLDMLRQNGK 383 >ref|NP_445708.1|hypothetical protein Length = 351 Score = 35.0 bits (79), Expect = 0.11 Identities = 23/64 (35%), Positives = 31/64 (48%) Frame = -3 Query: 6931 PIGSPDRDGLVAAYQSCDILLFPSRLEGFGIAPAEALACGRPVVTTNVAALPEVVDDGEN 6752 P+ PD L A CDIL +P R F I EALA G VV T A E + + ++ Sbjct: 219 PLPDPDYYSLFAG---CDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWILNNDD 275 Query: 6751 GFLV 6740 + + Sbjct: 276 VYWI 279 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,565,623 Number of Sequences: 14420 Number of extensions: 910896 Number of successful extensions: 2636 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 2093 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2631 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3599235546 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig926 (6222 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,602,965 Number of Sequences: 14420 Number of extensions: 764459 Number of successful extensions: 2126 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1772 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2125 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 3052331991 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig927 (5100 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,757,407 Number of Sequences: 14420 Number of extensions: 608901 Number of successful extensions: 1907 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1592 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1907 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2497739518 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig928 (9478 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,064,746 Number of Sequences: 14420 Number of extensions: 1162863 Number of successful extensions: 3415 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 2568 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3408 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4595867133 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig929 (8050 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,486,422 Number of Sequences: 14420 Number of extensions: 1002534 Number of successful extensions: 3040 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 2367 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3035 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 3917995418 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig930 (10,032 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 141 1e-33 ref|NP_817815.1|gp54 34 0.34 >ref|NP_046572.1|ABC transporter Length = 705 Score = 141 bits (356), Expect = 1e-33 Identities = 118/480 (24%), Positives = 218/480 (45%), Gaps = 2/480 (0%) Frame = +3 Query: 5307 YSHSYFINSVGQQVMKDLRVAIFRHIQYMSLSFFNRNPVGRFITRITNDVDALNEFLTQG 5486 + SY I + +V K++ F + + ++FF G I+R ND + +F + Sbjct: 224 FVRSYLIIKLSYKVDKEMSNVYFNKVTKLPINFFENREDGEVISRF-NDGIYIKDFFSAN 282 Query: 5487 VVMIVDDLMNLIGIIVVMLVLNWRLALISLATLPVLMLIVSIYQRFMRAAYRLVRQRLAR 5666 V + D++ ++G+ V++ N L L + + +L + ++ ++ + + + A+ Sbjct: 283 FVTAIIDIILILGLGVILYRTNNILFLTIILPILLLSCLAILFFDHLKKKNQKLMEDKAK 342 Query: 5667 INAFLSEQISGVLVTQLFNGEARSRAAFARLSDDYMQANIRSVLIFAIFIPSV--NLLAA 5840 + L + + N + F D Q N + A+ + L+ Sbjct: 343 STSLLINFLKNMTTVYSLNKTSFFLEKFHLTYDK--QLNSTFSVAKAVISNEILKGLIQN 400 Query: 5841 IGTAALLWGGGNGVLAGWASLGMLVAFIQYLERAFQPIRNLAERYTVLQSAMASAERIFA 6020 T +LW G VL SLG L+ + + + LQ A ++ R F Sbjct: 401 SFTIIILWVGTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHVASIRFFD 460 Query: 6021 VLDTQAEVRDPVQPRTLPTPVRGEIELRNVVFGYNPQEPVLRGISLHIPAGQSVAIVGAT 6200 V++ + +D + T ++ I+ N+ G +P ++ I+L + V I+G + Sbjct: 461 VVNYPVQ-QDSNENLTELDFIQN-IKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGES 518 Query: 6201 GAGKSSLVGLLARFYDVQQGSITLDGIDIRDLPQAELRRHVAAVPQDPVCFSGTIASNIR 6380 G GKS+ L++ Y V SI L+G+DI +R+ + + ++P F GTI N+ Sbjct: 519 GTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLC 578 Query: 6381 LHNNAISDDQVRAAAELVGAHRFIERLPGGYNHEVRERGANLSIGQRQLLAFARAIAFNP 6560 + +++ A + H FI L Y++++ E G+NLS GQ+Q LA ARAI P Sbjct: 579 M-GEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQP 637 Query: 6561 EVLLILDEATSSVDTETEALIQEALARLMRGRTSIIIAHRLSTIRHVDRIIVLHKGRVVE 6740 +V LILDE+ S++D + LI E L R+ I+I H + ++ +V R++E Sbjct: 638 QV-LILDESLSNIDPDNTKLIYETLHRM--DCLIILITHNDPSNFKYNKKLVFRNNRIIE 694 Score = 91.3 bits (225), Expect = 2e-18 Identities = 60/242 (24%), Positives = 119/242 (49%) Frame = +1 Query: 3940 QMVAAGTLTIGELVQFNAYLALLAFPMIILGWMVNLFQQATASLERLSDILRRQPLITSP 4119 + V ++++G L+ N A L + + M + QQA + R D++ + Sbjct: 412 RQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHVASIRFFDVVNYP--VQQD 469 Query: 4120 ATPRLPAGEGEIEFRGVGVRAGHSDQQWLLRDLSFRVPAGTVLAIVGATGAGKTTLINLL 4299 + L + + V + G ++++ D++ + + I+G +G GK+T L Sbjct: 470 SNENLTELDFIQNIKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSL 529 Query: 4300 GRVRDPDVGQVLVDGIDIRDLDLAALRRMIGYVPQESFLFSIPLRENIGFGVETVDPDRL 4479 ++ + ++G+DI D ++R+ I Y+ + FLF ++EN+ G E D + + Sbjct: 530 SKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMG-EIFDQNEI 588 Query: 4480 NYVVEVSRLVNDLDQLPGGMETMVGERGVTLSGGQKQRVAIARALMRDPRILVLDDALSS 4659 +S+ + L + E G LS GQKQR+A+ARA++ P++L+LD++LS+ Sbjct: 589 ENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSN 648 Query: 4660 VD 4665 +D Sbjct: 649 ID 650 >ref|NP_817815.1|gp54 Length = 920 Score = 33.9 bits (76), Expect = 0.34 Identities = 24/55 (43%), Positives = 25/55 (45%) Frame = +3 Query: 1869 LRRLRTTTASRNAAGGCRLTRAVAGPPSVKSRTAHALHLTAEHRLRHSTASCTLG 2033 L L T ASRN A GC + A G S KS TAH TA CTLG Sbjct: 300 LEPLGWTPASRNDACGCEVWTAGEGHASPKSATAH-------------TAGCTLG 341 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,691,388 Number of Sequences: 14420 Number of extensions: 1170793 Number of successful extensions: 3536 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 2765 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3529 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4874358918 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig931 (7615 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,346,745 Number of Sequences: 14420 Number of extensions: 877882 Number of successful extensions: 2729 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 2218 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2723 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 3697627173 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig932 (6902 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_077256.1|group I glycosyltransferase 48 2e-05 ref|NP_835600.1|putative glycosyltransferases 43 5e-04 ref|NP_445711.1|mannosyltransferase-related protein 39 0.006 ref|YP_003751.1|hypothetical protein 39 0.007 ref|NP_445705.1|glycosyl transferase-related protein 38 0.013 >ref|YP_077256.1|group I glycosyltransferase Length = 329 Score = 47.8 bits (112), Expect = 2e-05 Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 7/211 (3%) Frame = -2 Query: 3637 ASRILVVSEHTKREVVGL-----LGVDPERVVVTPNAVRHHFRPPDPVQLEQFRVRHSLP 3473 A+ ++V + HT E+ L + P RV+ N + + + VQ + R + +P Sbjct: 121 AAYVIVPTYHTLSELEQYADKKGLDLPPIRVIYHGNYLNVAYTREEAVQ--KVREMYGIP 178 Query: 3472 --ERFILYVGTLEPRKNLTTLLEAFAILSRQVPTVPLLIGGGKGWMYEPIFARLEQLQLR 3299 ++ IL V PRK+L L + ++ LI GKG +Y Sbjct: 179 PNKKIILNVTNYHPRKDLPRLRR----IREKLGDDYYLITVGKGNIYGD----------- 223 Query: 3298 DRVKFVGYIPEEELPLWYAAATVFVFPSIYEGFGMPPLEAMACGTPVITSNTSSLPEVVG 3119 K +G I + EL L YA + V++ S EGF +P +EA A G P + ++ E+ Sbjct: 224 ---KSIGTISDTELSLLYAGSDVYLSASQDEGFELPLVEAAAHGLPAVVTDIPVHKELGK 280 Query: 3118 DAGIMVSPTDTTALAEAMQRILTSADVRADL 3026 + +D EA+++I + ++R L Sbjct: 281 HLKLFFYSSD----EEAIEKIKEAQEIRVTL 307 >ref|NP_835600.1|putative glycosyltransferases Length = 484 Score = 42.7 bits (99), Expect = 5e-04 Identities = 50/178 (28%), Positives = 73/178 (41%), Gaps = 29/178 (16%) Frame = -2 Query: 3574 DPERVVVTPNAVRHH-FRPPDPVQLEQFRVRHSLPERFI------LYVGTLEPRKNLTTL 3416 DPE V P+AV + F+ D + +F VR + +R LY RKNL Sbjct: 166 DPE-VFYLPHAVEPNVFKRMDRKKAREF-VRGLVGDRMFDDSVIWLYNNRNISRKNLMDT 223 Query: 3415 LEAFAI------------LSRQVPTVPLLIGGGKGWMYEPI--FARLEQLQLRDRVKFV- 3281 + AF + + + P VP +G I F + LR+ + F+ Sbjct: 224 IYAFLVYMLKNYRKHHLLIIKSDPVVP--VGTDIPAFLADINSFFHYRDIDLREHIVFIS 281 Query: 3280 -------GYIPEEELPLWYAAATVFVFPSIYEGFGMPPLEAMACGTPVITSNTSSLPE 3128 G EE+ L Y A V + S EGFG+ LEA CG PV+ + T + + Sbjct: 282 NDEVFHNGGFSREEIALLYNGADVVLQLSSNEGFGIASLEASLCGAPVVATMTGGIAD 339 >ref|NP_445711.1|mannosyltransferase-related protein Length = 309 Score = 39.3 bits (90), Expect = 0.006 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 21/112 (18%) Frame = -2 Query: 3208 EGFGMPPLEAMACGTPVITSNTSSLPEVVGDAGIMVSPTDT------------------- 3086 EGFG+P +E+M+ GTP + N + E GI + P D Sbjct: 201 EGFGLPLMESMSVGTPAVYVNAFAFKEYA--VGIPIDPYDVIIEETSYGKMDNYLIRDSD 258 Query: 3085 --TALAEAMQRILTSADVRADLRTRGLKRAQQFSWTQTAIKTLEAYRAALTH 2936 AL EA + I TS +L + L+++++F K L +++ + H Sbjct: 259 VRNALQEARECIKTSC--YDELSAKALEKSKEFEMPNIEEKILSDFKSVMRH 308 >ref|YP_003751.1|hypothetical protein Length = 313 Score = 38.9 bits (89), Expect = 0.007 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -2 Query: 3247 YAAATVFVFPSIYEGFGMPPLEAMACGTPVITSNTSSLPEVV-GDAGIMVS 3098 Y A +V S E FGM P EAMA GTPVI N + E G+ G+ ++ Sbjct: 195 YYRAKFYVSLSYSESFGMTPFEAMAVGTPVIYPNCHAYAEYFKGEVGLPIN 245 >ref|NP_445705.1|glycosyl transferase-related protein Length = 328 Score = 38.1 bits (87), Expect = 0.013 Identities = 24/62 (38%), Positives = 32/62 (51%) Frame = -2 Query: 3274 IPEEELPLWYAAATVFVFPSIYEGFGMPPLEAMACGTPVITSNTSSLPEVVGDAGIMVSP 3095 + EEE YA + F+ S EGFG+PP+EAMA G I + E + GI + P Sbjct: 207 LSEEEKYRLYARSKFFLALSKSEGFGIPPIEAMALGVVPIYLDAHGYKENL--VGIPIDP 264 Query: 3094 TD 3089 D Sbjct: 265 ID 266 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,402,131 Number of Sequences: 14420 Number of extensions: 775677 Number of successful extensions: 2360 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 1977 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2360 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3370639597 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig933 (7448 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_049873.1|MotA activator of middle period transcription 37 0.023 ref|NP_803728.1|ORF162 33 0.33 >ref|NP_049873.1|MotA activator of middle period transcription Length = 211 Score = 37.4 bits (85), Expect = 0.023 Identities = 15/53 (28%), Positives = 32/53 (60%) Frame = +2 Query: 5828 LNDRQIDALLFVVEHERITNRDLQEMHPDVSPETIRRDLSDLVSRGLLLKVGD 5986 LN++ L+ + + + IT +++E+HPD+ + ++ L+ +GL+ K GD Sbjct: 15 LNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVEKSGD 67 >ref|NP_803728.1|ORF162 Length = 522 Score = 33.5 bits (75), Expect = 0.33 Identities = 18/61 (29%), Positives = 31/61 (50%) Frame = -3 Query: 1650 QLANANLIVGTWRQTENPQWLNRYPARKLLVPLTDTNWMWVGVEPMTGTEIARQLADAVR 1471 Q+ N I+ ++ E P + + L+ L DT WVGV+P+ G + R L D++ Sbjct: 299 QIERVNKIMKRVKENELPDEVRTIAIPRDLI-LGDTGESWVGVDPVQGVTVIRNLFDSIE 357 Query: 1470 Q 1468 + Sbjct: 358 K 358 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,822,699 Number of Sequences: 14420 Number of extensions: 857567 Number of successful extensions: 2535 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 2090 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2534 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3649864179 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig934 (6145 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817650.1|gp61 66 4e-11 ref|NP_046877.1|putative non-heme haloperoxidase 66 5e-11 >ref|NP_817650.1|gp61 Length = 274 Score = 66.2 bits (160), Expect = 4e-11 Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 2/114 (1%) Frame = -3 Query: 362 NGYQLHWIEAGQGPAVILLHGFAGSCADWEPTVDWLARQGYRALAVDALGFGRSEKPVNA 183 +G+++ + G G ++ LHG S +E + LA++G+ A+DA+ GR++ + Sbjct: 12 DGFRVGVSQVGTGVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTD---SL 68 Query: 182 PYGLHLQSDLYAGL--LTALGIERAVFVAHSMGGKYALATALRHPQRIARLVLI 27 P+G ++ L L ALGI++AVFV HSMGG A R+P+R+ +L+ Sbjct: 69 PFGHTVEEMTRVTLRALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILL 122 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 65.9 bits (159), Expect = 5e-11 Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 2/114 (1%) Frame = -3 Query: 362 NGYQLHWIEAGQGPAVILLHGFAGSCADWEPTVDWLARQGYRALAVDALGFGRSEKPVNA 183 +G+++ G G ++ LHG + S +E + LA G+R +A+DA GRS + Sbjct: 10 DGFRVGVSTVGTGAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSG---SL 66 Query: 182 PYGLHLQSDLYAGLLTA--LGIERAVFVAHSMGGKYALATALRHPQRIARLVLI 27 P G ++ L T L I RA+F HSMGG + A RHP R+A VL+ Sbjct: 67 PTGHTVEDMTRVTLKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLL 120 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,879,941 Number of Sequences: 14420 Number of extensions: 634924 Number of successful extensions: 1996 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1656 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1992 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 3012067845 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig935 (7820 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_695118.1|putative tail protein 34 0.27 ref|YP_024800.1|Pas14 33 0.45 >ref|NP_695118.1|putative tail protein Length = 1517 Score = 33.9 bits (76), Expect = 0.27 Identities = 59/275 (21%), Positives = 112/275 (40%), Gaps = 14/275 (5%) Frame = -3 Query: 3585 SALLTPLRGRGDRLIGVIVLAWPDQPDLVTVRMVEAIARQAALA--VENVRLAERSARLL 3412 +A T ++G G + G I+ A+ +V + EA A L+ VE + A +A Sbjct: 613 TAFSTVVQGIG-KAAGTIIEAFGTAFGIVVKAVGEAAPGLAKLSPLVEAIGTALGNAA-- 669 Query: 3411 AKEQLLAELGRAVGATLDLDTILHQTIDRLAAAFGSGLVALLDNQETLMVVAAAPPLDTL 3232 + G A + L + + + R A A G+ + V A P+ + Sbjct: 670 ---PFVTAFGNAFSSILSVLSPVIDAFSRFATALGTAISG---------VAEAITPIIQI 717 Query: 3231 IGRQLPLLSGSLAWVVQSGQPFVVDDCRLHAPDMALFGPDIA---SCIIAPLRSGGRVI- 3064 IG + ++ +A + + P + D A + FGP IA I+ +++ VI Sbjct: 718 IGNTITAVTQIIANAIVAIAPIIADCIVQVAQVIGQFGPQIAMILQVIVQAIQASAPVIM 777 Query: 3063 ----GMLSVVSRQAGVFSDEDVDLLEAIAAQVSGPVVSARLYAESQRLAAQVQRRADQLA 2896 G++ VV A V + ++ + Q P++ SQ ++A V Sbjct: 778 TLIQGIVKVVQIMAPVMTQVVSAIITVV--QTLAPII-------SQIISAIVTAITQIAP 828 Query: 2895 VLNSIARIVTATL----DLRESLPLATEQIQRGFG 2803 +++SI +++A L ++ +S+ A +G G Sbjct: 829 IISSIGGVISAALQGIANIIQSVGTAISTAAQGIG 863 >ref|YP_024800.1|Pas14 Length = 570 Score = 33.1 bits (74), Expect = 0.45 Identities = 26/80 (32%), Positives = 33/80 (41%) Frame = -1 Query: 2054 EALNNIVKHAAARNVHEFNADQVAIRVIDDGKGFDPAARPSGEGRHLGLLSMRERAAELG 1875 EA+ + A H+ N +A V G AA SG+ LLS E A E Sbjct: 357 EAVTRFTRGAMVALAHKVNESVIARIVAQSGAAVVIAADASGDDAVSSLLSAIELAIE-- 414 Query: 1874 GSFNVHSRPGAGAEVEVVVP 1815 R G GA +EVV+P Sbjct: 415 -DMKYRHRMGRGATMEVVLP 433 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,842,173 Number of Sequences: 14420 Number of extensions: 876390 Number of successful extensions: 2630 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 2147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2630 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 3802492062 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig936 (9511 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817915.1|gp64 35 0.15 ref|NP_112087.1|DNA transfer protein 34 0.25 >ref|NP_817915.1|gp64 Length = 133 Score = 35.0 bits (79), Expect = 0.15 Identities = 23/50 (46%), Positives = 27/50 (54%) Frame = +2 Query: 1772 APIRKSSSVN*PARAVGGRSTTA*ARIGPLSILGSSNIIVTPVTVSPARI 1921 A I S V P AVGG T +IG S++GS I V PV+V P RI Sbjct: 61 AKIASKSLVTSPVVAVGG-VTAEPTKIGSTSLVGSPTIEVGPVSVEPVRI 109 >ref|NP_112087.1|DNA transfer protein Length = 722 Score = 34.3 bits (77), Expect = 0.25 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 13/83 (15%) Frame = -2 Query: 2100 TLRDPTVVETLSALQPEVGVVAA-YGEILRRAVL----------SIPPLGYLN--IHPSL 1960 T+ P V+ +S PE+G +A+ YGE+ R A