Prophage Finder Output

Genome file:  temp/chlorochromatiumlc.txt
Sequence Header:  >Contig1

Genome size:  2572079
Host's GC content:  44.28
Predicted Codon Position GC:  	1st:  54.13	 2nd:  38.66	 3rd:  42.62

 >PredictedProphage1 
 Length:   30426 
 Number of hits =   7 
 GC	Coding	First	Second	Third
 47.72 	 47.42 	 52.40 	 50.52 	 39.35 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 726142	728445	1	ref|YP_195210.1|virion structural protein	78.6bits(192)	2e-12
 729625	732345	1	ref|YP_195210.1|virion structural protein	52.8bits(125)	1e-04
 734992	736803	1	ref|YP_195210.1|virion structural protein	52.0bits(123)	2e-04
 742093	744774	1	ref|YP_195210.1|virion structural protein	68.6bits(166)	2e-09
 745045	747798	1	ref|YP_195210.1|virion structural protein	60.1bits(144)	8e-07
 748288	751551	1	ref|YP_195210.1|virion structural protein	66.2bits(160)	1e-08
 755887	756567	1	ref|NP_695118.1|putative tail protein	42.0bits(97)	0.21
 
 >PredictedProphage2 
 Length:   34833 
 Number of hits =   9 
 GC	Coding	First	Second	Third
 46.47 	 46.95 	 53.21 	 50.50 	 37.14 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 786163	787719	1	ref|YP_195210.1|virion structural protein	53.5bits(127)	7e-05
 791833	794736	1	ref|YP_195210.1|virion structural protein	72.0bits(175)	2e-10
 796171	798177	1	ref|YP_195210.1|virion structural protein	59.3bits(142)	1e-06
 799114	800364	1	ref|YP_195210.1|virion structural protein	46.6bits(109)	0.009
 803839	806607	1	ref|YP_195210.1|virion structural protein	59.3bits(142)	1e-06
 808678	812568	1	ref|YP_195210.1|virion structural protein	63.2bits(152)	9e-08
 813505	814464	1	ref|YP_195210.1|virion structural protein	42.0bits(97)	0.21
 814867	818130	1	ref|YP_195210.1|virion structural protein	57.4bits(137)	5e-06
 819436	820995	1	ref|NP_064745.1|gp7 	53.9bits(128)	5e-05
 
 >PredictedProphage3 
 Length:   11199 
 Number of hits =   5 
 GC	Coding	First	Second	Third
 41.25 	 40.93 	 53.06 	 36.24 	 33.49 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 1437980	1438198	1	ref|NP_835691.1|similar to DNA helicase	41.2bits(95)	0.37
 1439723	1440475	-1	ref|NP_862840.1|gp1 	66.6bits(161)	8e-09
 1443688	1443972	1	ref|NP_817387.1|gp49 	59.3bits(142)	1e-06
 1444033	1444461	1	ref|NP_612855.1|Gp26 protein	44.7bits(104)	0.033
 1448903	1449178	1	ref|YP_024839.1|Pas53 	41.6bits(96)	0.28
 
 >PredictedProphage4 
 Length:   12940 
 Number of hits =   5 
 GC	Coding	First	Second	Third
 40.19 	 40.03 	 45.55 	 37.51 	 37.04 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 1774824	1775162	-1	ref|NP_052116.1|internal virion protein D	69.7bits(169)	1e-09
 1780461	1781987	1	ref|NP_932589.1|hypothetical protein	85.5bits(210)	2e-14
 1782526	1782672	1	ref|NP_690788.1|ORF4 	42.4bits(98)	0.16
 1783047	1784609	1	ref|NP_046798.1|Old 	64.7bits(156)	3e-08
 1787533	1787763	1	ref|NP_543076.1|putative DNA methylase	63.2bits(152)	9e-08