BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig12 (2045 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_803765.1|ORF199 33 0.12 >ref|NP_803765.1|ORF199 Length = 143 Score = 33.1 bits (74), Expect = 0.12 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 6/89 (6%) Frame = +1 Query: 589 WLKEEVLEAFEKEPWN--RYPDILPFRGMRSYASFVGVPADAVMMSNGSNEMLYTIFLAC 762 W+KE V+ +KEP + + D L A F+G A ++N N+M+YT Sbjct: 43 WVKENVIPILQKEPISLEEFHDRL--------AKFLGQFARLHFIANHVNDMVYTGKAMD 94 Query: 763 LGPGKKIL----IPEPSFSLYEKIARLLH 837 +G GK+++ I E + L K +++LH Sbjct: 95 MGKGKQVVELPTIFELNHELSGKGSKMLH 123 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,491,286 Number of Sequences: 14420 Number of extensions: 215738 Number of successful extensions: 571 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 546 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 570 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 976756847 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig13 (3566 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_006556.1|Ppp 52 4e-07 ref|NP_040641.1|Nin protein 49 5e-06 ref|NP_958232.1|gene 58 protein 48 8e-06 ref|YP_024437.1|putative serine 47 1e-05 ref|YP_006863.1|putative serine 34 0.12 >ref|YP_006556.1|Ppp Length = 230 Score = 52.0 bits (123), Expect = 4e-07 Identities = 59/216 (27%), Positives = 83/216 (38%), Gaps = 11/216 (5%) Frame = +2 Query: 2762 RRIIAIGDVHGCLCSLKELLARIVLEP-DDQLVFSGDMIDRGACSKDVVEYLLELGSRFS 2938 R + +GD+HGC L L R+ +P D L+ GD+IDRG + + +E L R Sbjct: 21 RNVWVVGDLHGCYTRLMSELHRVDFDPAQDLLISVGDLIDRGTENVECLELLQMPWFR-- 78 Query: 2939 CFFLMGNHELMLLDYLVTRVPD----MWFFGGGEATLRSYNSPDGFDLPSEHLDFFRGCS 3106 +MGNHE ++LD L PD W GG+ D L ++ + Sbjct: 79 --AVMGNHERLMLDAL---SPDGNVNNWLMNGGQWFFML--DTDQEILARALVELVKRLP 131 Query: 3107 YFIE----TENFFFTHGGL-DPELSIRDNLRYCKPEEFCWQRAHMRSSFLE-RNSYNWQK 3268 Y IE E H D E + W R + S + + Sbjct: 132 YIIELNTGQETIVIAHADYPDNEYQFGKEVPLF---NVVWARERISDSMDDIGGEISGAD 188 Query: 3269 TVVCAHTPVSEPVLLDRLIAIDTGCVYKDNPLLGKL 3376 + HTPV P IDTG V+ N L K+ Sbjct: 189 RFIFGHTPVKSPKTFWNQQYIDTGAVFCGNLTLMKV 224 >ref|NP_040641.1|Nin protein Length = 221 Score = 48.5 bits (114), Expect = 5e-06 Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 19/221 (8%) Frame = +2 Query: 2753 SENRRIIAIGDVHGCLCSLKELLARIVLE-PDDQLVFSGDMIDRGACSKDVVEYLLELGS 2929 S+ R I +GD+HGC +L L I + D L+ GD++DRGA + + +E + Sbjct: 10 SKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELI----- 64 Query: 2930 RFSCF-FLMGNHELMLLDYLVTR-VPDMWFFGGG---------EATLRSYNSPDGFDLPS 3076 F F + GNHE M++D L R + W GG + L + +LP Sbjct: 65 TFPWFRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPL 124 Query: 3077 EHLDFFRGCSYFIETENFFFTHGGLDPELSIRDNLRYCKP---EEFCWQRAHMRSSFLER 3247 + Y I ++ F D + KP ++ W R + +S + Sbjct: 125 IIELVSKDKKYVICHADYPF------------DEYEFGKPVDHQQVIWNRERISNS---Q 169 Query: 3248 N----SYNWQKTVVCAHTPVSEPVLLDRLIAIDTGCVYKDN 3358 N T + HTP +P+ + IDTG V+ N Sbjct: 170 NGIVKEIKGADTFIFGHTPAVKPLKFANQMYIDTGAVFCGN 210 >ref|NP_958232.1|gene 58 protein Length = 223 Score = 47.8 bits (112), Expect = 8e-06 Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 16/218 (7%) Frame = +2 Query: 2753 SENRRIIAIGDVHGCLCSLKELLARIVLEPDDQLVFS-GDMIDRGACSKDVVEYLLELGS 2929 S+ R I +GD+HGC +L + L I + L+ S GD++DRG + + +E + Sbjct: 10 SKYRNIWVVGDLHGCYTNLMKKLETIGFDTKKDLLISVGDLVDRGTENVECLELI----- 64 Query: 2930 RFSCF-FLMGNHELMLLDYLVTR-VPDMWFFGGG---------EATLRSYNSPDGFDLPS 3076 F F + GNHE M++D L R + W GG + L + +LP Sbjct: 65 TFPWFRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKAGELPL 124 Query: 3077 EHLDFFRGCSYFIETENFFFTHGGLDPELSIRDNLRYCKP---EEFCWQRAHMRSSFLE- 3244 +G Y I ++ D + KP ++ W R + +S Sbjct: 125 IIELVSKGKKYVICHADY------------PCDKYEFGKPVDHQQVIWNRERISNSQDGI 172 Query: 3245 RNSYNWQKTVVCAHTPVSEPVLLDRLIAIDTGCVYKDN 3358 T + HTP +P+ + IDTG V+ N Sbjct: 173 VKEIKGADTFIFGHTPAVKPLKFSNQMYIDTGAVFCGN 210 >ref|YP_024437.1|putative serine Length = 235 Score = 47.0 bits (110), Expect = 1e-05 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Frame = +2 Query: 2768 IIAIGDVHGCLCSLKELLARIVLE--PDDQLVFSGDMIDRGACSKDVVEYLLELGSR-FS 2938 I + D+HG L ++ +I E P++ +VF GD +DRG SKDVV Y+ +L S + Sbjct: 3 IYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDN 62 Query: 2939 CFFLMGNHE 2965 L+GNH+ Sbjct: 63 VVTLLGNHD 71 >ref|YP_006863.1|putative serine Length = 287 Score = 33.9 bits (76), Expect = 0.12 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Frame = +2 Query: 2747 VLSENRRIIAIGDVHGCLCSLKELLARIVLE-PDDQLVFSGDMIDRGACSKDVVEYLLEL 2923 V+ ++ + +GD+HGC L++ L D +V GD+IDRG + V+ L Sbjct: 12 VVPDDVNLFFVGDIHGCNDLLEDALQLAGYNGKKDCVVCVGDLIDRGTQNLQVLAKFL-Y 70 Query: 2924 GSRFSCFFLMGNHELMLLDYLVTRVPDMWFFGGG 3025 RF + GNH+ +++ W + GG Sbjct: 71 NPRFCS--VRGNHD----QFMIVGDWANWMYNGG 98 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,191,936 Number of Sequences: 14420 Number of extensions: 383077 Number of successful extensions: 1109 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 986 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1101 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1750868090 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig14 (2805 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,275,796 Number of Sequences: 14420 Number of extensions: 327102 Number of successful extensions: 943 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 873 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 943 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1370248158 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig15 (2231 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,084,792 Number of Sequences: 14420 Number of extensions: 259855 Number of successful extensions: 798 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 696 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 794 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1068915528 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig16 (2728 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,884,940 Number of Sequences: 14420 Number of extensions: 279143 Number of successful extensions: 786 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 747 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 786 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1327734492 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig17 (3496 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,765,101 Number of Sequences: 14420 Number of extensions: 335210 Number of successful extensions: 941 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 888 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 941 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1712316866 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig18 (2292 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542302.1|unknown 35 0.027 >ref|NP_542302.1|unknown Length = 110 Score = 35.4 bits (80), Expect = 0.027 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Frame = +2 Query: 911 AETSSSGCRQTGSSGCRKTSRTGRRKACRTGS---SKSSTVHLNRRRCL*TTGRPSR 1072 A+ S RQ GS CR TS T R + ++G+ S S+T RRRC ++ R SR Sbjct: 52 AQMKSRSARQRGS--CRPTSTTRSRVSKKSGTASQSSSTTASCRRRRCARSSSRSSR 106 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,359,824 Number of Sequences: 14420 Number of extensions: 228185 Number of successful extensions: 569 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 547 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 569 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1101906748 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig19 (2942 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_695158.1|minor capsid protein 34 0.10 >ref|NP_695158.1|minor capsid protein Length = 1608 Score = 33.9 bits (76), Expect = 0.10 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 13/138 (9%) Frame = -3 Query: 2439 HIKSMAEVDRVVFVADSGLLSKDNLDLIEESKKHYIVAARLKNQPESIKKQILDKASYQS 2260 H + M+ D V + + K+ L+ ++K++Y A K Q ++I K D SY S Sbjct: 767 HKRQMSIKDYATLVQNGSMTEKEANKLLNKAKENYNKQA--KAQKDNIGKMKKDSDSYYS 824 Query: 2259 ----GNQMMIKEIALP----GKRRLLVNYTEKRARKD-----AHDRQKALVKLQKKINKS 2119 K++A GK +K+ KD A DR+K L +L K NKS Sbjct: 825 KLGKAESQKNKDLAAARKKDGKNHEKYLADKKKIEKDFQTKTAGDRKKYLAQLAKDENKS 884 Query: 2118 KNPESFISNAGYRKYLKI 2065 + + + K L I Sbjct: 885 NDAVTKATKISSGKQLDI 902 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,930,258 Number of Sequences: 14420 Number of extensions: 336091 Number of successful extensions: 845 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 799 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 845 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1431096643 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig21 (5430 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_038305.1|ORF5 45 6e-05 ref|NP_839903.1|putative DnaC protein 40 0.002 ref|NP_076710.1|DnaC 40 0.003 ref|NP_061611.1|orf 21 39 0.004 ref|NP_695040.1|putative replication protein DnaC 39 0.004 ref|NP_862860.1|gp21 39 0.006 ref|NP_075485.1|hypothetical protein 39 0.006 ref|NP_803371.1|dnaC 39 0.006 ref|NP_958645.1|77ORF013 38 0.010 ref|NP_076651.1|DnaC 35 0.084 >ref|NP_038305.1|ORF5 Length = 260 Score = 45.4 bits (106), Expect = 6e-05 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Frame = -3 Query: 5314 NFNLILIGPSGTGKSYLAGGLCHEALK-LGYH----ALFRTMDDLIQTIRFKEITAAAAR 5150 ++N++LIG +G GKS+LA + ALK L H +F + DL+ I KE A Sbjct: 119 DYNIVLIGNTGVGKSHLA----YSALKALSDHTKKMGVFINVVDLLAKI--KEDFNLEAE 172 Query: 5149 EYKRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDE 4970 +R+ A LV+DD+ EK L + L+++T IITTN SP++ G Sbjct: 173 YIRRISEAEWLVLDDL---GTEKVTEWSSGILYSILNKRTKTIITTNLSPQDILGTYGKR 229 Query: 4969 V 4967 V Sbjct: 230 V 230 >ref|NP_839903.1|putative DnaC protein Length = 294 Score = 40.4 bits (93), Expect = 0.002 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%) Frame = -3 Query: 5311 FNLILIGPSGTGKSYLAGGLCHEA---LKLG-YHALFRTMDDLIQTIR----FKEITAAA 5156 FN + +G +G GKS+LA + E LK + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 5155 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 4985 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 4984 MLGDEVLA 4961 D++++ Sbjct: 264 SYDDKIVS 271 >ref|NP_076710.1|DnaC Length = 294 Score = 40.0 bits (92), Expect = 0.003 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 11/128 (8%) Frame = -3 Query: 5311 FNLILIGPSGTGKSYLAGGLCHEALKL----GYHALFRTMDDLIQTIR----FKEITAAA 5156 FN + +G +G GKS+LA + E + + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDDKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 5155 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 4985 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 4984 MLGDEVLA 4961 D++++ Sbjct: 264 SYDDKIVS 271 >ref|NP_061611.1|orf 21 Length = 257 Score = 39.3 bits (90), Expect = 0.004 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 5308 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 5135 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 118 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIQMLMDRIKAAYNKNAVETTDELVRL 177 Query: 5134 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 4958 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 178 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 231 Query: 4957 ALLDRLLYKCEVIKLTGKSYR 4895 + R+ + +++ G +R Sbjct: 232 RINSRMKHNARKVRVIGDDFR 252 >ref|NP_695040.1|putative replication protein DnaC Length = 296 Score = 39.3 bits (90), Expect = 0.004 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 5/110 (4%) Frame = -3 Query: 5308 NLILIGPSGTGKSYLAGGLCHEALK-LGYHALFRTMDDLIQTIR--FKEITAAAAREY-- 5144 N ++ GP+GTGKS+LA + + L+ +F + +++ I+ F + + EY Sbjct: 153 NTVVSGPAGTGKSHLAMSILKDCLQHTDLTVIFASWSEVLHLIKDSFDNKDSFYSTEYFM 212 Query: 5143 KRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKE 4994 + + LLVIDDI EK + L L +T IITTN E Sbjct: 213 EVFRNTDLLVIDDI---GSEKITEWSMSLLTEVLDARTKTIITTNLKSDE 259 >ref|NP_862860.1|gp21 Length = 256 Score = 38.9 bits (89), Expect = 0.006 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Frame = -3 Query: 5308 NLILIGPSGTGKSYLAGGLCHEALKLGYH-ALFRTMDDLIQTIRFKEITAAAARE---YK 5141 N++ G +GTGKS+LA + + A+F + DL+ I+ A ++E Sbjct: 120 NIVFQGEAGTGKSHLAFAMMKYLSETTKEIAIFINVTDLLMKIK-----ADFSQEEFLVN 174 Query: 5140 RLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLG 4976 ++ SA LV+DD+ M EK L N L+++ + +ITTN + +E + G Sbjct: 175 KIASAKFLVLDDLGM---EKDSEWSFSILYNILNKRANTVITTNLTAQEIQKRYG 226 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 38.9 bits (89), Expect = 0.006 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 5308 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 5135 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 5134 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 4958 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 4957 ALLDRLLYKCEVIKLTGKSYR 4895 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 >ref|NP_803371.1|dnaC Length = 259 Score = 38.9 bits (89), Expect = 0.006 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 5308 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 5135 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 5134 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 4958 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 4957 ALLDRLLYKCEVIKLTGKSYR 4895 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 >ref|NP_958645.1|77ORF013 Length = 259 Score = 38.1 bits (87), Expect = 0.010 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 5308 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 5135 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 5134 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 4958 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 4957 ALLDRLLYKCEVIKLTGKSYR 4895 + R+ + +++ G +R Sbjct: 234 RINSRMKKRARKVRVIGDDFR 254 >ref|NP_076651.1|DnaC Length = 294 Score = 35.0 bits (79), Expect = 0.084 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 11/146 (7%) Frame = -3 Query: 5311 FNLILIGPSGTGKSYLAGGLCHEA---LKLG-YHALFRTMDDLIQTIRFKEITAAAAREY 5144 FN + +G + GKS+LA + E LK + LF + +LI+ I+ + E Sbjct: 145 FNTVFVGGACRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNHSDTKAEE 204 Query: 5143 KRLL----SAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 4985 +RL + LLVIDD+ F + + G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNNWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 4984 MLGDEVLATALLDRLLYKCEVIKLTG 4907 D++++ + K VIK G Sbjct: 264 SYDDKIVSPIMEGS---KNSVIKFEG 286 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,788,981 Number of Sequences: 14420 Number of extensions: 621249 Number of successful extensions: 2005 Number of sequences better than 0.5: 10 Number of HSP's better than 0.5 without gapping: 1717 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1992 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2669674028 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig22 (2839 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,731,176 Number of Sequences: 14420 Number of extensions: 305935 Number of successful extensions: 849 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 789 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 844 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1374371408 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig23 (2472 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,316,962 Number of Sequences: 14420 Number of extensions: 285207 Number of successful extensions: 794 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 747 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 793 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1200880408 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig24 (3361 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_795697.1|putative tail protein 45 4e-05 ref|NP_056689.1|putative minor tail protein 42 6e-04 ref|YP_006601.1|Gp21 41 0.001 ref|YP_195122.1|hypothetical protein 40 0.002 ref|YP_164732.1|orf97 37 0.010 ref|NP_680494.1|tape measure protein 37 0.018 ref|YP_195253.1|hypothetical protein 35 0.040 >ref|NP_795697.1|putative tail protein Length = 1460 Score = 45.4 bits (106), Expect = 4e-05 Identities = 68/307 (22%), Positives = 117/307 (38%), Gaps = 16/307 (5%) Frame = +3 Query: 519 TQEYPKETIPGVTQVAQLTGSGTSGSQASLSTLFSI---------GADEPALSYRLTTDS 671 TQ P+ G+ VAQL + G +S + GA ALS Sbjct: 962 TQALPQIIAAGIQLVAQLAVALIKGLPQIISAGIQLIMGLGKAMLGAIPNALSGVWEGIK 1021 Query: 672 SLISAAQSGLTSNSETVLYSVNSDGSQLTATAGTRTVFTLNVSSSGTWNFDLEDQLDHSG 851 S S+ +T S T V++D + + G +T N +++ T + Sbjct: 1022 SGFSSMWDQITGKSSTSTAKVSADATVMAMNVGMQTTAIANQANTDTTSM---------L 1072 Query: 852 SDSDSETMLANSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKGPS 1031 + T LAN + N T++ +A T++L L S S ++ + + + Sbjct: 1073 NSISQNTELANINATSNATQMANNVNAQTGTMSLRGLNDSMSLASGISANMSVANINATT 1132 Query: 1032 TSLTAISG------KVYEDALGHE-SDSGDLSTGNQETIPGVTQVAQLSGSGTSGSQASL 1190 + SG + DA+ H S + + G T AQ SG S S AS+ Sbjct: 1133 QAREMASGVNGATSSMNLDAINHTLSLASGVGANMGAASTGATSQAQAMSSGVSNSLASM 1192 Query: 1191 STLFSIGADEPALSYRLTTDSSLLSAAQSGLTSNSETVLYSVNSDGSQLTATAGTRTVFT 1370 + + A LS +T++ +S+A + TS+ + +V S ++ +A T Sbjct: 1193 QSNSTKAAS--GLSNSVTSE---MSSAATSATSSVNRLSSAVESGFNKAKTSATTSMNGI 1247 Query: 1371 LNVSSSG 1391 N +G Sbjct: 1248 ANAVKTG 1254 Score = 45.1 bits (105), Expect = 5e-05 Identities = 99/470 (21%), Positives = 175/470 (37%), Gaps = 37/470 (7%) Frame = +3 Query: 1257 LLSAAQSGLTSNSETVLYS--------VNSDGSQLTATAGTRTVFTLNVSSSGAWNFDLE 1412 L+++ G+ N+ ++ S V+S S L LNV + N L Sbjct: 799 LITSLVQGIGQNATNLISSAIKIIGSFVSSIASALPQLISVGMELLLNVVNGIVQNIPLI 858 Query: 1413 DQLDHSGSDSDSETMLANSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDI 1592 Q DS ++ AN S+++ I V T L T+ +Q+ T V + Sbjct: 859 IQQAQQIIDSFGNSLQANLPSIISNGIAILVNLVQGITQMLPTVLQIATQVITSFVSGIV 918 Query: 1593 PTLK-----GPSTSLTAISGKVY---EDALGHESDSGDLSTGNQETIP-----GVTQVAQ 1733 L G ++ + G + + A L++G + +P G+ VAQ Sbjct: 919 QFLPQLLQGGIQIIISLVQGIIQNLPQIAQSAVQIIQSLASGLTQALPQIIAAGIQLVAQ 978 Query: 1734 LSGSGTSGSQASLSTLFSI---------GADEPALSYRLTTDSSLISAAQSGLTSNSETV 1886 L+ + G +S + GA ALS S S+ +T S T Sbjct: 979 LAVALIKGLPQIISAGIQLIMGLGKAMLGAIPNALSGVWEGIKSGFSSMWDQITGKSSTS 1038 Query: 1887 LYSVNSDGSQLTATAGTRTVFTLNVSSSGTWNFDLEDQLDHSGSDSDSETMLANSQSLLN 2066 V++D + + G +T N +++ T + + T LAN + N Sbjct: 1039 TAKVSADATVMAMNVGMQTTAIANQANTDTTSM---------LNSISQNTELANINATSN 1089 Query: 2067 FTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKGPSTSLTAISG------KVY 2228 T++ +A T++L L S S ++ + + + + SG + Sbjct: 1090 ATQMANNVNAQTGTMSLRGLNDSMSLASGISANMSVANINATTQAREMASGVNGATSSMN 1149 Query: 2229 EDALGHE-SDSGDLSTGNQETIPGVTQVAQLTGSGTSGSQASLSTLFSIGADEPALSYRL 2405 DA+ H S + + G T AQ SG S S AS+ + + A LS + Sbjct: 1150 LDAINHTLSLASGVGANMGAASTGATSQAQAMSSGVSNSLASMQSNSTKAAS--GLSNSV 1207 Query: 2406 TTDSSLLSAAQSGLTSNSETVLYSVNSDGSQLTATAGTRTVFTLNVSSSG 2555 T++ +S+A + TS+ + +V S ++ +A T N +G Sbjct: 1208 TSE---MSSAATSATSSVNRLSSAVESGFNKAKTSATTSMNGIANAVKTG 1254 Score = 45.1 bits (105), Expect = 5e-05 Identities = 100/470 (21%), Positives = 174/470 (37%), Gaps = 37/470 (7%) Frame = +3 Query: 1839 LISAAQSGLTSNSETVLYS--------VNSDGSQLTATAGTRTVFTLNVSSSGTWNFDLE 1994 LI++ G+ N+ ++ S V+S S L LNV + N L Sbjct: 799 LITSLVQGIGQNATNLISSAIKIIGSFVSSIASALPQLISVGMELLLNVVNGIVQNIPLI 858 Query: 1995 DQLDHSGSDSDSETMLANSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDI 2174 Q DS ++ AN S+++ I V T L T+ +Q+ T V + Sbjct: 859 IQQAQQIIDSFGNSLQANLPSIISNGIAILVNLVQGITQMLPTVLQIATQVITSFVSGIV 918 Query: 2175 PTLK-----GPSTSLTAISGKVY---EDALGHESDSGDLSTGNQETIP-----GVTQVAQ 2315 L G ++ + G + + A L++G + +P G+ VAQ Sbjct: 919 QFLPQLLQGGIQIIISLVQGIIQNLPQIAQSAVQIIQSLASGLTQALPQIIAAGIQLVAQ 978 Query: 2316 LTGSGTSGSQASLSTLFSI---------GADEPALSYRLTTDSSLLSAAQSGLTSNSETV 2468 L + G +S + GA ALS S S+ +T S T Sbjct: 979 LAVALIKGLPQIISAGIQLIMGLGKAMLGAIPNALSGVWEGIKSGFSSMWDQITGKSSTS 1038 Query: 2469 LYSVNSDGSQLTATAGTRTVFTLNVSSSGTWNFDLEDQLDHSGSDSDSETMLANSQSLLN 2648 V++D + + G +T N +++ T + + T LAN + N Sbjct: 1039 TAKVSADATVMAMNVGMQTTAIANQANTDTTSM---------LNSISQNTELANINATSN 1089 Query: 2649 FTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKGPSTSLTAISG------KVY 2810 T++ +A T++L L S S ++ + + + + SG + Sbjct: 1090 ATQMANNVNAQTGTMSLRGLNDSMSLASGISANMSVANINATTQAREMASGVNGATSSMN 1149 Query: 2811 EDALGHE-SDSGDLSTGNQETIPGVTQVAQLSGSGTSGSQASLSTLFSIGADEPALSYRL 2987 DA+ H S + + G T AQ SG S S AS+ + + A LS + Sbjct: 1150 LDAINHTLSLASGVGANMGAASTGATSQAQAMSSGVSNSLASMQSNSTKAAS--GLSNSV 1207 Query: 2988 TTDSSLISAAQSGLTSNSETVLYSVNSDGSQLTATAGTRTVFTLNVSSSG 3137 T++ +S+A + TS+ + +V S ++ +A T N +G Sbjct: 1208 TSE---MSSAATSATSSVNRLSSAVESGFNKAKTSATTSMNGIANAVKTG 1254 >ref|NP_056689.1|putative minor tail protein Length = 1510 Score = 41.6 bits (96), Expect = 6e-04 Identities = 117/505 (23%), Positives = 200/505 (39%), Gaps = 37/505 (7%) Frame = +3 Query: 1704 TIPGVTQVAQLSGSGTSGSQASLSTLFSIGADEPALSYRLTTDSSLISAAQSGLTSNSET 1883 +I GV A LSG + S A ++ + A+S L+ +S+ISA S + S + Sbjct: 825 SIGGVISAA-LSGIASIVSAAGMAIATAAMGIGTAISTALSGVASIISATGSAIGSALQG 883 Query: 1884 VLYSVNSDGSQLTATA-----GTRTVF---TLNVSSSGTWNFDLEDQLDHSGSDSDSETM 2039 + V S G+ ++ A G ++ F + ++S+G + + L + + + Sbjct: 884 IASVVQSVGASISTAAQGIGNGIKSAFEGISSVITSAGNAISSVLNSLANVFNSIGTAAQ 943 Query: 2040 LANSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKGPSTSLTAISG 2219 A + T ++++T+ NLG + S V + I ++ S L Sbjct: 944 KAGAGFNQLATGVVKITN-----TNLGDMAAS-----LAAVAHGIGSISDSSAGLAQAGA 993 Query: 2220 KVYEDALGHESDSGDLS------TGNQETIPGVTQV-----AQLTGSGTS----GSQA-- 2348 + + G S + T TI + + LT +GTS SQA Sbjct: 994 GMAQLGNGMSKVSASATSAVSGLTLFSSTITSIQSAFTNLQSLLTTAGTSFSTFSSQAMQ 1053 Query: 2349 SLSTLFSIGADEPALSYRLTTDSSLLSAAQSGLTSNSETVL---YSVNSDGSQLTATAGT 2519 SL+ L +I ++ + L A +GLT S + S+ S GS LT A Sbjct: 1054 SLTGLSAIAGPITIFRTQIMMIAPSLMQASAGLTMFSSVAMGLTASLTSIGSALTTLATQ 1113 Query: 2520 RTVFTLNVSSSGTWNFDLEDQLDHSGSDSDSETMLANSQSLLNFTKLIEVTDADNDTVN- 2696 T T + + + + L S TM+A+S S+L + V A +N Sbjct: 1114 LTTLTTSFTMMASISAML----------GTSFTMMASSSSMLGTS--FNVVGASLTMLNS 1161 Query: 2697 -LGTLGGSNSQLFTVTVENDIPTLKGPSTSLTAISGKVYEDALGHESDSGDL--STGNQE 2867 S QL T + IP LK + +LT ++ + A G + + ST Sbjct: 1162 QFMMFASSLMQLTTQFMTASIP-LKMFNVALTMMTPALMMGAAGFVRFNAQVMQSTAGMS 1220 Query: 2868 TIPGV--TQVAQLSGSGTSGSQASLSTLFSIGADEPALSYRLTTDSSLISAAQSGLTSNS 3041 T+ G T A+L+ +S + +LS + I P + +S +S+A + S Sbjct: 1221 TLSGAISTIPAKLTSVASSANTTTLS-IMRIATSAPRI-------ASAMSSAAGQVQSAM 1272 Query: 3042 ETVLYSVNSDGS---QLTATAGTRT 3107 + + SV S Q+ AGT+T Sbjct: 1273 QRMAQSVQSSSQYMIQMGRQAGTQT 1297 >ref|YP_006601.1|Gp21 Length = 3433 Score = 40.8 bits (94), Expect = 0.001 Identities = 157/831 (18%), Positives = 298/831 (35%), Gaps = 41/831 (4%) Frame = +3 Query: 714 ETVLYSVNSDGSQLTATAGTRTVFTLNVSSSGTWNFDLEDQLDHSGSDSDSETMLANSQS 893 +++ +VN GS LT+ T +S T N D+ + D S + T+ + Sbjct: 2499 DSLTTTVNQQGSTLTSIGNRTTTLENGLS---TTNADVNKKADASTVQTLQNTVTQQGKD 2555 Query: 894 LLNFTKLIEVTDADNDTVNLGTLGGSNS---QLFTVTVENDIPTLKGPSTSLTAISGKVY 1064 L I +D T N +++ Q TV TL ++T++ Sbjct: 2556 LTATNSAITKLTSDLSTTNASVNKKADATALQSLQNTVTQQGGTLSTQGNAITSL----- 2610 Query: 1065 EDALGHESDSGDLSTGNQETIP---GVTQVAQLSGSGTSGSQASLSTLFSIGADEPALSY 1235 E+ L G IP G+ + +S +G+ TL + A +S Sbjct: 2611 ------ENSLNALDVGGTNQIPDSGGLARYGNVSAEKYNGNGVMAFTLKAGAAYRDLISI 2664 Query: 1236 RLTTD--------SSLLSAAQSGLTSNSETVLYSVNSDGSQLTATAGTRTVFTLNVSSSG 1391 L+ S AA +G S YS NS +++ T T +S G Sbjct: 2665 NLSAPVDGTEYVLSFYAKAAANGQKVRSH--FYSPNSTKRSVSSQGNTFT------NSDG 2716 Query: 1392 AWNFDLEDQLDHSGSDSDSETMLANSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQLFT 1571 +F L + T A S S I D TV L + + Sbjct: 2717 LCDFTLTTEWQRYWV---KWTQSAGSGSKNLIVARINPGSTDQ-TVYLSSPKFERGNV-- 2770 Query: 1572 VTVENDIPTLKGPSTSLTAISGKVYEDALGHESDSGDLSTGNQETIPGVTQVAQLSGSGT 1751 T ++ P + +++A++ +V +S G L++ Q + +A + S Sbjct: 2771 PTAWSEAPEDNASAAAVSALTSRV-------DSAEGTLTSQGQAITKLNSDLATTNAS-- 2821 Query: 1752 SGSQASLSTLFSIGADEPALSYRLTTDSSLISAAQSGLTSNSETV-----LYSVNSDGSQ 1916 +A + L ++ + +L + I++ Q+GLT+ ++ + +VN+ ++ Sbjct: 2822 VNKKADATALNALTTRVSSAEGKLESQGQSITSLQNGLTTANQNIGKKADSSAVNTLTNR 2881 Query: 1917 LTATAGTRTVFTLNVSSSGTWNFDLEDQLDHSGSDSDSETMLANSQSLLNFTKLIEVTDA 2096 ++ T T + +++S L +Q+ + D E+ A+ Q L ++ Sbjct: 2882 VSQVENTLTTQSESITSLSGSISTLRNQVSNPWFDGSLESY-ADGQELYGSAAVVTTAQK 2940 Query: 2097 DNDTVNL------GTLGGSNSQLFTVTVENDIPTLKGPSTSLTAISGKVYEDALGHESDS 2258 N + +L G S+ Q+ GP +S+ VY L + Sbjct: 2941 FNGSRSLRLRREANNGGNSDKQI-------------GPWSSIR--ENAVYSIELWAMMPA 2985 Query: 2259 GDLSTGNQETIPGVTQVAQLTGSGTSGSQASLSTLFSIGADEPALSYRLTTDSSLLSAAQ 2438 + +TI G+ G +G + ++ + Sbjct: 2986 DQSPSSGWQTIVGIQ------GQNAAGQNSW---------------------QGAVTITE 3018 Query: 2439 SGLTSNSETVLYSVNSDGSQLTATAGTRTVFTLNVSSSGTWNFDLEDQLDHSGSDSDSET 2618 SGL + V +S + + T G + T + SGT +DL D T Sbjct: 3019 SGLGERGKWVKFSGKARMNGTGRTRGVVWISTRGATGSGTPGYDLY-------IDDVVIT 3071 Query: 2619 MLANSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTL------KGPST 2780 + ++Q LN V DA VN T +N++ + +L K + Sbjct: 3072 DITDAQDALN------VADASTTAVNSLTTRVTNAENKITAQSQQLTSLQSSLNGKADAG 3125 Query: 2781 SLTAISGKVYEDALGHESDSGDLSTGNQETIPGVTQVAQLSGSGTSGSQASLSTLFSI-- 2954 +L +++ +V A G+ + + + T T+ ++ Q G+ + +S+++SI Sbjct: 3126 ALNSLTSRV-TSAEGNITSTANSLTSLNSTVGTLSSTVQAQGNTLVDTNNKISSMYSIKV 3184 Query: 2955 --------GADEPALSYRLTTDSSLISAAQSGLTSNSETVLYSVNSDGSQL 3083 GA S T+D L + S N+ T + + ++G++L Sbjct: 3185 ETNNGKKVGAGIVLGSDGDTSDMILYADRFSLFNRNNNTAVPVMIAEGNEL 3235 Score = 33.1 bits (74), Expect = 0.20 Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 16/236 (6%) Frame = +3 Query: 678 ISAAQSGLTSNSETVLYSVNSDGSQLTATAGTRTVFTLNVSSSGTWNFDLEDQLDHSGSD 857 ++ +SGL + V +S + + T G + T + SGT +DL D Sbjct: 3014 VTITESGLGERGKWVKFSGKARMNGTGRTRGVVWISTRGATGSGTPGYDLY-------ID 3066 Query: 858 SDSETMLANSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTL------ 1019 T + ++Q LN V DA VN T +N++ + +L Sbjct: 3067 DVVITDITDAQDALN------VADASTTAVNSLTTRVTNAENKITAQSQQLTSLQSSLNG 3120 Query: 1020 KGPSTSLTAISGKVYEDALGHESDSGDLSTGNQETIPGVTQVAQLSGSGTSGSQASLSTL 1199 K + +L +++ +V A G+ + + + T T+ ++ Q G+ + +S++ Sbjct: 3121 KADAGALNSLTSRV-TSAEGNITSTANSLTSLNSTVGTLSSTVQAQGNTLVDTNNKISSM 3179 Query: 1200 FSI----------GADEPALSYRLTTDSSLLSAAQSGLTSNSETVLYSVNSDGSQL 1337 +SI GA S T+D L + S N+ T + + ++G++L Sbjct: 3180 YSIKVETNNGKKVGAGIVLGSDGDTSDMILYADRFSLFNRNNNTAVPVMIAEGNEL 3235 >ref|YP_195122.1|hypothetical protein Length = 3338 Score = 40.0 bits (92), Expect = 0.002 Identities = 108/485 (22%), Positives = 182/485 (37%), Gaps = 9/485 (1%) Frame = +3 Query: 1497 IEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKGPSTSLTAISGKVYEDALGHESDS 1676 IE +D D +NL + +++ L T N + + SG + L + SD+ Sbjct: 2151 IESSDVPADVINLSRVINTSASLST----NWVSLSSNQIAASDITSGVISSTRLANNSDA 2206 Query: 1677 GDLSTGNQETIPGVTQVAQLSGSGTSGSQASLSTLFSIGADEPALSYRLTTDSSLISAAQ 1856 + S + G QA T+ SI E RL I+AA Sbjct: 2207 AN------------------SFTFLRGDQAYALTVQSIKGAESRYFARL------ITAAS 2242 Query: 1857 SGLTSNSETVLYSVNSDGSQLTATAGT------RTVFTLNVSSSGTWNFDLEDQLDH--- 2009 G S+T+++S NSD + A T + +++ GT ++ + LD Sbjct: 2243 QG----SQTLVFSTNSDILRGHAIIDNIDGIPEDTTVSSVLTTGGTTTIEISEPLDGNLA 2298 Query: 2010 SGSDSDSETMLANSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKG 2189 SG+ + E + + NFT+ V DN + G G SN+Q F +T+ T G Sbjct: 2299 SGTILEFERGASPIRLDSNFTRGNFV---DNIVIVNGGNGYSNNQYFDITISGGSGT--G 2353 Query: 2190 PSTSLTAISGKVYEDALGHESDSGDLSTGNQETIPGVTQVAQLTGSGTSGSQASLSTLFS 2369 ++ +G V E + +D G T + P T + +GSG A +ST+ Sbjct: 2354 LKANIIVENGSVTEVTV---TDGGINYTSDFNVTPNPTIIG--SGSGLI-LAAKISTVNR 2407 Query: 2370 IGADEPALSYRLTTDSSLLSAAQSGLTSNSETVLYSVNSDGSQLTATAGTRTVFTLNVSS 2549 + A+ R+T + +SA G + + N TAG +V + Sbjct: 2408 MYANTSIDVARVTDQT--ISADPYGSIGVARFLKSQFN------IGTAGNGSVILKTGAD 2459 Query: 2550 SGTWNFDLEDQLDHSGSDSDSETMLANSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQL 2729 SG LD D + N+ +L T D + T N+ G S + L Sbjct: 2460 SG---------LDADLLDGVQGSFYLNASNLSAGTL---SPDRLSGTYNISVSGSSGNTL 2507 Query: 2730 FTVTVENDIPTLKGPSTSLTAISGKVYEDALGHESDSGDLSTGNQETIPGVTQVAQLSGS 2909 T + + PS+ + + ++ +D G+ + + + SGS Sbjct: 2508 RLATTTTNPTSDPAPSSYVGGVIADTRNNSANALNDGGNTN---------IVLSIRTSGS 2558 Query: 2910 GTSGS 2924 G +GS Sbjct: 2559 GATGS 2563 Score = 38.9 bits (89), Expect = 0.004 Identities = 94/400 (23%), Positives = 150/400 (37%), Gaps = 25/400 (6%) Frame = +3 Query: 2079 IEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKGPSTSLTAISGKVYEDALGHESDS 2258 IE +D D +NL + +++ L T N + + SG + L + SD+ Sbjct: 2151 IESSDVPADVINLSRVINTSASLST----NWVSLSSNQIAASDITSGVISSTRLANNSDA 2206 Query: 2259 GDLSTGNQETIPGVTQVAQLTGSGTSGSQASLSTLFSIGADEPALSYRLTTDSSLLSAAQ 2438 + T + G QA T+ SI E RL T +S Sbjct: 2207 ANSFTFLR------------------GDQAYALTVQSIKGAESRYFARLITAAS------ 2242 Query: 2439 SGLTSNSETVLYSVNSDGSQLTATAGT------RTVFTLNVSSSGTWNFDLEDQLDH--- 2591 S+T+++S NSD + A T + +++ GT ++ + LD Sbjct: 2243 ----QGSQTLVFSTNSDILRGHAIIDNIDGIPEDTTVSSVLTTGGTTTIEISEPLDGNLA 2298 Query: 2592 SGSDSDSETMLANSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKG 2771 SG+ + E + + NFT+ V DN + G G SN+Q F +T+ T G Sbjct: 2299 SGTILEFERGASPIRLDSNFTRGNFV---DNIVIVNGGNGYSNNQYFDITISGGSGT--G 2353 Query: 2772 PSTSLTAISGKVYEDALGHESDSGDLSTGNQETIPGVTQVAQLSGSGTSGSQASLSTLFS 2951 ++ +G V E + +D G T + P T + SGSG A +ST+ Sbjct: 2354 LKANIIVENGSVTEVTV---TDGGINYTSDFNVTPNPTIIG--SGSGLI-LAAKISTVNR 2407 Query: 2952 IGADEPALSYRLTTDS-------------SLISAAQSGLTSNSETVLYSVNSDGSQLTAT 3092 + A+ R+T + L S G N +L + G Sbjct: 2408 MYANTSIDVARVTDQTISADPYGSIGVARFLKSQFNIGTAGNGSVILKTGADSGLDADLL 2467 Query: 3093 AGTRTVFTLNVS--SSGTWNFD-LEDQLDHSGSDSDSETM 3203 G + F LN S S+GT + D L + S S S T+ Sbjct: 2468 DGVQGSFYLNASNLSAGTLSPDRLSGTYNISVSGSSGNTL 2507 Score = 38.5 bits (88), Expect = 0.005 Identities = 94/399 (23%), Positives = 154/399 (38%), Gaps = 9/399 (2%) Frame = +3 Query: 591 GSQASLSTLFSIGADEPALSYRLTTDSSLISAAQSGLTSNSETVLYSVNSDGSQLTATAG 770 G QA T+ SI E RL I+AA G S+T+++S NSD + A Sbjct: 2215 GDQAYALTVQSIKGAESRYFARL------ITAASQG----SQTLVFSTNSDILRGHAIID 2264 Query: 771 T------RTVFTLNVSSSGTWNFDLEDQLDH---SGSDSDSETMLANSQSLLNFTKLIEV 923 T + +++ GT ++ + LD SG+ + E + + NFT+ V Sbjct: 2265 NIDGIPEDTTVSSVLTTGGTTTIEISEPLDGNLASGTILEFERGASPIRLDSNFTRGNFV 2324 Query: 924 TDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKGPSTSLTAISGKVYEDALGHESDSGDL 1103 DN + G G SN+Q F +T+ T G ++ +G V E + +D G Sbjct: 2325 ---DNIVIVNGGNGYSNNQYFDITISGGSGT--GLKANIIVENGSVTEVTV---TDGGIN 2376 Query: 1104 STGNQETIPGVTQVAQLSGSGTSGSQASLSTLFSIGADEPALSYRLTTDSSLLSAAQSGL 1283 T + P T + SGSG A +ST+ + A+ R+T + +SA G Sbjct: 2377 YTSDFNVTPNPTIIG--SGSGLI-LAAKISTVNRMYANTSIDVARVTDQT--ISADPYGS 2431 Query: 1284 TSNSETVLYSVNSDGSQLTATAGTRTVFTLNVSSSGAWNFDLEDQLDHSGSDSDSETMLA 1463 + + N TAG +V + SG LD D + Sbjct: 2432 IGVARFLKSQFN------IGTAGNGSVILKTGADSG---------LDADLLDGVQGSFYL 2476 Query: 1464 NSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKGPSTSLTAISGKV 1643 N+ +L T D + T N+ G S + L T + + PS+ + + Sbjct: 2477 NASNLSAGTL---SPDRLSGTYNISVSGSSGNTLRLATTTTNPTSDPAPSSYVGGVIADT 2533 Query: 1644 YEDALGHESDSGDLSTGNQETIPGVTQVAQLSGSGTSGS 1760 ++ +D G+ + + + SGSG +GS Sbjct: 2534 RNNSANALNDGGNTN---------IVLSIRTSGSGATGS 2563 >ref|YP_164732.1|orf97 Length = 2112 Score = 37.4 bits (85), Expect = 0.010 Identities = 137/693 (19%), Positives = 252/693 (36%), Gaps = 45/693 (6%) Frame = +3 Query: 864 SETMLANSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKGPSTSLT 1043 ++T ++S ++ KLI ++ V + N+ + + + + S ++ Sbjct: 635 ADTSNSSSIDRASYNKLIFYYNSALSDVQMELRNSYNNDISNMQSSVSVASQAASSAAIV 694 Query: 1044 AISGKVYEDALGHESDSGDLSTGNQETIPG--VTQVAQ-----LSGSGTSGSQASLSTLF 1202 A D + + L+T NQ G T+VA SG+ +GS AS++ Sbjct: 695 ASQATTTGDNASYAAAQA-LATANQAQTAGDSATRVANNASQAASGAVIAGSTASVNADK 753 Query: 1203 SIGADEPALSY--RLTTDSSLLSAAQSG--LTSNSETVLYSVNSDGSQLTATAGTRTVFT 1370 ++ A S T ++ S A SG L ++ TV+ + S + +AG Sbjct: 754 AVSVANQAKSAGDNATRVANNASQAASGAILAGSTATVIANKASTVANEAKSAGDNATSV 813 Query: 1371 LNVSSSGAWNFDLEDQLDHSGSDSDSETMLANSQSLLNFTKLIEVTDADNDTVNLGTLGG 1550 N ++S A + + S +DS ANS+ + T + + ++ + G Sbjct: 814 ANNATSVA---------NSAKSTADSTYAYANSEIAVQSTAITKAQSTADNAFSQAQAVG 864 Query: 1551 SNSQLFTVTVENDIPTLKGPSTSLTAIS--------GKVYEDALGHESDSGDLSTGNQET 1706 S + N T K ST+ A S GKV A+ DL G++ T Sbjct: 865 SQASAEIAVQSN--ATAKAQSTADNAFSKATTAIDNGKVTSQAVT------DLKDGSKLT 916 Query: 1707 IPGVTQVAQLSGSGTSGSQASLSTLFSIGADEPALSYRLTTDSSLISAAQSGLTSNSETV 1886 I + + + + T IG +L T+ + SA Q T ++ + Sbjct: 917 IAELENGLATKVANSDYASYKEQTASQIG--------QLVTNGAF-SAYQ---TQTADLI 964 Query: 1887 LYSV-NSDGSQLTATAGTRTVFTLNVSSSGTWNFDLEDQLDHSGSDSDSETMLANSQSLL 2063 V D S AT + S T+ D +D S+S + + S Sbjct: 965 ASKVATKDFSAYQATTAKAIESKVESSDFNTYKTQTADLIDDKVSNSAYASDKTQTAS-- 1022 Query: 2064 NFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKGPSTSLTA--ISGKVYE-- 2231 E+ D +++ + SQ+ + D T K + L A ++ K + Sbjct: 1023 ------EIADRVSNSAFSTYQTQTASQIASKVDNGDFSTYKTQTADLIASKVANKDFSAY 1076 Query: 2232 -----DALGHESDSGDLSTGNQETIPGVTQVAQLTGSGTSGSQASLSTLFSIGADEPALS 2396 + + +S D +T +T ++ + + T +Q + ST +G + Sbjct: 1077 QATTAKEISSKVESSDFNTYKTQTADMISSKVESSDFQTLQTQVNNST---VGTN----- 1128 Query: 2397 YRLTTDSSLLSAAQSGLTSNSETVLYSVNSDGSQLTATAGTRTVFTLNVSSSGTWNFDLE 2576 LT SS + + G + + N A RT+ T++VSS+ + + Sbjct: 1129 -LLTNLSSNWTKSWGGSSVGTPPTFSDTN---------ARIRTIQTVSVSSNSPYTISIG 1178 Query: 2577 D--------QLDHSGSD--------SDSETMLANSQSLLNFTKLIEVTDADNDTVNLGTL 2708 D +LD +G+ S + T S + + + D DT NL + Sbjct: 1179 DDLFKFSWVELDSNGNSTYQAPWITSANYTFTTTSTTTQLYIGVAYKNDTALDTSNLPKI 1238 Query: 2709 GGSNSQLFTVTVENDIPTLKGPSTSLTAISGKV 2807 L T N P + + +T +SG++ Sbjct: 1239 KLEKGSLATDWSLN--PEDQATQSQITQLSGEI 1269 Score = 34.7 bits (78), Expect = 0.067 Identities = 120/603 (19%), Positives = 220/603 (36%), Gaps = 29/603 (4%) Frame = +3 Query: 1446 SETMLANSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKGPSTSLT 1625 ++T ++S ++ KLI ++ V + N+ + + + + S ++ Sbjct: 635 ADTSNSSSIDRASYNKLIFYYNSALSDVQMELRNSYNNDISNMQSSVSVASQAASSAAIV 694 Query: 1626 AISGKVYEDALGHESDSGDLSTGNQETIPG--VTQVAQ-----LSGSGTSGSQASLSTLF 1784 A D + + L+T NQ G T+VA SG+ +GS AS++ Sbjct: 695 ASQATTTGDNASYAAAQA-LATANQAQTAGDSATRVANNASQAASGAVIAGSTASVNADK 753 Query: 1785 SIGADEPALSY--RLTTDSSLISAAQSG--LTSNSETVLYSVNSDGSQLTATAGTRTVFT 1952 ++ A S T ++ S A SG L ++ TV+ + S + +AG Sbjct: 754 AVSVANQAKSAGDNATRVANNASQAASGAILAGSTATVIANKASTVANEAKSAGDNATSV 813 Query: 1953 LNVSSSGTWNFDLEDQLDHSGSDSDSETMLANSQSLLNFTKLIEVTDADNDTVNLGTLGG 2132 N ++S + + S +DS ANS+ + T + + ++ + G Sbjct: 814 ANNATSVA---------NSAKSTADSTYAYANSEIAVQSTAITKAQSTADNAFSQAQAVG 864 Query: 2133 SNSQLFTVTVENDIPTLKGPSTSLTAIS--------GKVYEDALGHESDSGDLSTGNQET 2288 S + N T K ST+ A S GKV A+ DL G++ T Sbjct: 865 SQASAEIAVQSN--ATAKAQSTADNAFSKATTAIDNGKVTSQAVT------DLKDGSKLT 916 Query: 2289 IPGVTQVAQLTGSGTSGSQASLSTLFSIGADEPALSYRLTTDSSLLSAAQSGLTSNSETV 2468 I + + + + T IG +L T+ + SA Q T ++ + Sbjct: 917 IAELENGLATKVANSDYASYKEQTASQIG--------QLVTNGAF-SAYQ---TQTADLI 964 Query: 2469 LYSV-NSDGSQLTATAGTRTVFTLNVSSSGTWNFDLEDQLDHSGSDSDSETMLANSQSLL 2645 V D S AT + S T+ D +D S+S + + S Sbjct: 965 ASKVATKDFSAYQATTAKAIESKVESSDFNTYKTQTADLIDDKVSNSAYASDKTQTAS-- 1022 Query: 2646 NFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKGPSTSLTA--ISGKVYE-- 2813 E+ D +++ + SQ+ + D T K + L A ++ K + Sbjct: 1023 ------EIADRVSNSAFSTYQTQTASQIASKVDNGDFSTYKTQTADLIASKVANKDFSAY 1076 Query: 2814 -----DALGHESDSGDLSTGNQETIPGVTQVAQLSGSGTSGSQASLSTLFSIGADEPALS 2978 + + +S D +T +T ++ + S T +Q + ST +G + Sbjct: 1077 QATTAKEISSKVESSDFNTYKTQTADMISSKVESSDFQTLQTQVNNST---VGTN----- 1128 Query: 2979 YRLTTDSSLISAAQSGLTSNSETVLYSVNSDGSQLTATAGTRTVFTLNVSSSGTWNFDLE 3158 LT SS + + G + + N A RT+ T++VSS+ + + Sbjct: 1129 -LLTNLSSNWTKSWGGSSVGTPPTFSDTN---------ARIRTIQTVSVSSNSPYTISIG 1178 Query: 3159 DQL 3167 D L Sbjct: 1179 DDL 1181 >ref|NP_680494.1|tape measure protein Length = 1621 Score = 36.6 bits (83), Expect = 0.018 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 20/164 (12%) Frame = +3 Query: 1440 SDSETMLANSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKGPSTS 1619 +D + SL + TK + + D D + G N + V V D LKG S+ Sbjct: 1241 ADMVVKYGSFDSLPDSTKRLLINDDDARQKLIAA--GVNMDKYNVDVNPDAKILKGDSSP 1298 Query: 1620 LTAISGKVYE-------------------DALGHESDSGDLSTGNQETI-PGVTQVAQLS 1739 L A + K E + + + SG+ S G+ +T+ PG+ S Sbjct: 1299 LLAETIKAKEVIADYATVLPDKKQFGGNSSGVTNAAKSGEGSIGHYDTVLPGLKLFIGDS 1358 Query: 1740 GSGTSGSQASLSTLFSIGADEPALSYRLTTDSSLISAAQSGLTS 1871 S T+ ++ + S P++ Y + SS++ A+ SG S Sbjct: 1359 SSVTNHAEKGKGEVNSFNGTNPSMRYFMGNASSVVGASGSGKNS 1402 Score = 36.6 bits (83), Expect = 0.018 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 20/164 (12%) Frame = +3 Query: 2604 SDSETMLANSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKGPSTS 2783 +D + SL + TK + + D D + G N + V V D LKG S+ Sbjct: 1241 ADMVVKYGSFDSLPDSTKRLLINDDDARQKLIAA--GVNMDKYNVDVNPDAKILKGDSSP 1298 Query: 2784 LTAISGKVYE-------------------DALGHESDSGDLSTGNQETI-PGVTQVAQLS 2903 L A + K E + + + SG+ S G+ +T+ PG+ S Sbjct: 1299 LLAETIKAKEVIADYATVLPDKKQFGGNSSGVTNAAKSGEGSIGHYDTVLPGLKLFIGDS 1358 Query: 2904 GSGTSGSQASLSTLFSIGADEPALSYRLTTDSSLISAAQSGLTS 3035 S T+ ++ + S P++ Y + SS++ A+ SG S Sbjct: 1359 SSVTNHAEKGKGEVNSFNGTNPSMRYFMGNASSVVGASGSGKNS 1402 Score = 35.8 bits (81), Expect = 0.030 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 20/164 (12%) Frame = +3 Query: 858 SDSETMLANSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKGPSTS 1037 +D + SL + TK + + D D + G N + V V D LKG S+ Sbjct: 1241 ADMVVKYGSFDSLPDSTKRLLINDDDARQKLIAA--GVNMDKYNVDVNPDAKILKGDSSP 1298 Query: 1038 LTAISGKVYE-------------------DALGHESDSGDLSTGNQETI-PGVTQVAQLS 1157 L A + K E + + + SG+ S G+ +T+ PG+ S Sbjct: 1299 LLAETIKAKEVIADYATVLPDKKQFGGNSSGVTNAAKSGEGSIGHYDTVLPGLKLFIGDS 1358 Query: 1158 GSGTSGSQASLSTLFSIGADEPALSYRLTTDSSLLSAAQSGLTS 1289 S T+ ++ + S P++ Y + SS++ A+ SG S Sbjct: 1359 SSVTNHAEKGKGEVNSFNGTNPSMRYFMGNASSVVGASGSGKNS 1402 Score = 34.7 bits (78), Expect = 0.067 Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 20/164 (12%) Frame = +3 Query: 2022 SDSETMLANSQSLLNFTKLIEVTDADNDTVNLGTLGGSNSQLFTVTVENDIPTLKGPSTS 2201 +D + SL + TK + + D D + G N + V V D LKG S+ Sbjct: 1241 ADMVVKYGSFDSLPDSTKRLLINDDDARQKLIAA--GVNMDKYNVDVNPDAKILKGDSSP 1298 Query: 2202 LTAISGKVYE-------------------DALGHESDSGDLSTGNQETI-PGVTQVAQLT 2321 L A + K E + + + SG+ S G+ +T+ PG+ + Sbjct: 1299 LLAETIKAKEVIADYATVLPDKKQFGGNSSGVTNAAKSGEGSIGHYDTVLPGLKLFIGDS 1358 Query: 2322 GSGTSGSQASLSTLFSIGADEPALSYRLTTDSSLLSAAQSGLTS 2453 S T+ ++ + S P++ Y + SS++ A+ SG S Sbjct: 1359 SSVTNHAEKGKGEVNSFNGTNPSMRYFMGNASSVVGASGSGKNS 1402 >ref|YP_195253.1|hypothetical protein Length = 3779 Score = 35.4 bits (80), Expect = 0.040 Identities = 105/458 (22%), Positives = 169/458 (36%), Gaps = 60/458 (13%) Frame = +3 Query: 1623 TAISGK--VYEDALGHES----DSGDLSTGNQETIPGVTQVAQLSGSGTSGSQASLSTLF 1784 T ISG+ V D +G+ + DS +L++ +E++ G T L+ G +L Sbjct: 2822 TFISGRTLVQYDEVGNVTSNRYDSFNLNSDQRESLSGTT----LANQGFVNQDNALL--- 2874 Query: 1785 SIGADEPALSYRLTTDSSLISAAQSGLTSNSETVLYSVNSDGSQLTATAGTRTVFTLN-- 1958 +G D L + T + A S L + Y + T G + L+ Sbjct: 2875 -VGGDSNNLDQKAT-----LRVATSDLATGDRGTTYRTGGRLG-INTTLGLQPENELDRN 2927 Query: 1959 --VSSSG--TWNFDLEDQLDHSGSD----SDSETMLANSQSLLNFTKLIEVTDADNDTVN 2114 V G T NF +ED + G D S+ + N+ ++LN +V + N+T N Sbjct: 2928 FVVVGDGRITGNFKIEDDISVDGGDINTTSEVFNFINNNANILNLIGDAQVINFGNNTTN 2987 Query: 2115 ---LGTLGGSNSQLFTV--TVENDIPTLKGPSTSLTAISGKVYEDALGH---------ES 2252 L G SN+Q+ + + ++ ST+ V ++A ++ Sbjct: 2988 DQILSVGGSSNNQIVRIGSNAGTSLLSVHPNSTNANVDIASVADNAANSCKVVIGGAWQN 3047 Query: 2253 DSGDLSTGNQETIPGVT-----QVAQLTGSGTSGSQASLSTLF------SIGADEPALSY 2399 L+ G +TI T Q+A TG+ +Q LF + A A Sbjct: 3048 TDSTLTIGTYQTIVDGTLEVGGQIAPGTGTARLFAQTKEVRLFDNDRTTEVNAFTSANRL 3107 Query: 2400 RL------TTDSSLLSAAQSGLTSNSETVLYSVNSDG-SQLTATAGTRTVFTLNVSSSGT 2558 L TT + L+ Q+ LTS+S +L S G ++ + T N S T Sbjct: 3108 NLGSLGGFTTIRNSLN-VQASLTSDSNIILKGGTSAGIIEIIRGRFSTTPILHNTGSLDT 3166 Query: 2559 WNFDLEDQ------LDHSGSDS-DSETMLANSQSLLNFTKL-----IEVTDADNDTVNLG 2702 N D +D +G + T L+ + F + ++ A N T Sbjct: 3167 PNIDFYKYTSTGRVIDTAGQSLWGNNTFLSGGGQISGFDNVNTSDPSDLRVAGNYTFVFP 3226 Query: 2703 TLGGSNSQLFTVTVENDIPTLKGPSTSLTAISGKVYED 2816 T G + F V+V D G T SG Y D Sbjct: 3227 TGGSGSGAAFDVSVAFD-----GTVTLTIVSSGSGYND 3259 Score = 32.0 bits (71), Expect = 0.44 Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 23/205 (11%) Frame = +3 Query: 810 TWNFDLEDQLDHSGSD----SDSETMLANSQSLLNFTKLIEVTDADNDTVN---LGTLGG 968 T NF +ED + G D S+ + N+ ++LN +V + N+T N L G Sbjct: 2937 TGNFKIEDDISVDGGDINTTSEVFNFINNNANILNLIGDAQVINFGNNTTNDQILSVGGS 2996 Query: 969 SNSQLFTV--TVENDIPTLKGPSTSLTAISGKVYEDALGH---------ESDSGDLSTGN 1115 SN+Q+ + + ++ ST+ V ++A ++ L+ G Sbjct: 2997 SNNQIVRIGSNAGTSLLSVHPNSTNANVDIASVADNAANSCKVVIGGAWQNTDSTLTIGT 3056 Query: 1116 QETI-PGVTQV-AQLS-GSGTSGSQASLSTLFSIGADEPALSYRLTTDSSLLSAAQSGLT 1286 +TI G +V Q++ G+GT+ A + D T+ + L + G T Sbjct: 3057 YQTIVDGTLEVGGQIAPGTGTARLFAQTKEVRLFDNDRTTEVNAFTSANRLNLGSLGGFT 3116 Query: 1287 S--NSETVLYSVNSDGSQLTATAGT 1355 + NS V S+ SD S + GT Sbjct: 3117 TIRNSLNVQASLTSD-SNIILKGGT 3140 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,909,435 Number of Sequences: 14420 Number of extensions: 284595 Number of successful extensions: 1280 Number of sequences better than 0.5: 7 Number of HSP's better than 0.5 without gapping: 435 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1251 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1640033321 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig25 (6141 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 203 2e-52 ref|NP_795475.1|hypothetical protein 34 0.16 >ref|NP_046572.1|ABC transporter Length = 705 Score = 203 bits (517), Expect = 2e-52 Identities = 167/696 (23%), Positives = 329/696 (47%), Gaps = 15/696 (2%) Frame = +2 Query: 809 ACFQMLGKQLNVPIKKDLIQSIIGNQYARNGQLSLQDCGGVGVVLGLKAQVVSFQQ---- 976 AC + K N+ D + +IG++ SL+D + +G+K + + Q+ Sbjct: 21 ACISSILKFHNLNYGIDFLLDLIGDKEG----YSLRDLIVIFKKMGIKTRPLELQENKTF 76 Query: 977 DALPRLKVPALVRWEKS----FAVLYKASASEVVLAIPASSGIKVLAAREFWESWEHKGE 1144 +AL ++K+P + E + +Y+ + ++++ P I + +F E K Sbjct: 77 EALKQIKLPCIALLEGEEYGHYITIYEIRNNYLLVSDPDKDKITKIKKEDF----ESKFT 132 Query: 1145 ALVLDARADT-----PEQKFGFDWFAPSLKKYRNVLGEVMIASFFTQIMTLVNPLLFMII 1309 +L+ ++ +QK +F L + + ++ +++ S F + + + Sbjct: 133 NFILEIDKESIPEKEKDQKKHSYFFKDILFRNKLIVFVILLTSLFVVGLAVAGSFYIKFL 192 Query: 1310 IDQVIVRNSYATLHVLGMFMLIIALLQAVLNSLRTYLFVDTTNRIDVALGAEVIDHLLRL 1489 +D +I R+ +L + + + + L++ + + +R+YL + + ++D + + + +L Sbjct: 193 VDLIIPRSLRESLITITLIFISMVLIRCIFDFVRSYLIIKLSYKVDKEMSNVYFNKVTKL 252 Query: 1490 PLRFFEKRPVGELSSRIGELERIRQFLTGTALGVVLDAVFSVVYVIVLFAFSWKLALMAL 1669 P+ FFE R GE+ SR + I+ F + + ++D + + ++L+ + L L + Sbjct: 253 PINFFENREDGEVISRFNDGIYIKDFFSANFVTAIIDIILILGLGVILYRTNNILFLTII 312 Query: 1670 SVVPLIGLVTFLLSPVIRKQLREKAIKHGQTNAYLIEVLSGIQTVKSQNIELRARWNWQE 1849 + L+ + L ++K+ ++ ++ + LI L + TV S N + Sbjct: 313 LPILLLSCLAILFFDHLKKKNQKLMEDKAKSTSLLINFLKNMTTVYSLNKTSFFLEKFHL 372 Query: 1850 KYAAYVKEGFKPVVTGTLANSANSFLTQAS-GLIVIWAGAWLVLNQEMTLGQLIAFRIIA 2026 Y + F V ++N L Q S +I++W G VLN M+LG L+ +A Sbjct: 373 TYDKQLNSTFS-VAKAVISNEILKGLIQNSFTIIILWVGTRQVLNDSMSLGTLLFINTLA 431 Query: 2027 GYITSPVMRLAQLWQNFQETGMSLERLADIVDTP-QEGGRDQLAQIPLPLIKGEILAENV 2203 ++ S + R+ + + Q+ ++ R D+V+ P Q+ + L + L I+ I N+ Sbjct: 432 AFLLSSLDRILSMQSDLQQAHVASIRFFDVVNYPVQQDSNENLTE--LDFIQ-NIKTVNL 488 Query: 2204 SFRFRDNTPMVLKNVSTHIPAGTFVGIVGESGSGKSTFAKLVQRLYALEDGRIYIDHYDI 2383 + D ++++++ + V I+GESG+GKSTFAK + +LY + D IY++ DI Sbjct: 489 NIG-ADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDI 547 Query: 2384 SKVELNSLRCQIGIVPQDPMLFDVSVKENISLTNPXXXXXXXXXXXXXXXXHEFIMALPT 2563 ++ + S+R +I + ++P LF ++KEN+ + HEFI L Sbjct: 548 NRYDHLSIRKRIVYIDENPFLFKGTIKENLCM-GEIFDQNEIENACIMSQCHEFICNLDK 606 Query: 2564 GYNTPVGEKGSSLSGGQRQRIAIARTILQNPGLIILDEATSALDPDTESRLTTNMIRAFR 2743 Y+ + E GS+LS GQ+QR+A+AR IL P ++ILDE+ S +DPD + + R Sbjct: 607 QYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHR--M 664 Query: 2744 GKTVLFITHRLNSVKGAAVILCFHDGCIDESGTHED 2851 ++ ITH S L F + I ES E+ Sbjct: 665 DCLIILITHNDPSNFKYNKKLVFRNNRIIESSYSEN 700 >ref|NP_795475.1|hypothetical protein Length = 1307 Score = 34.3 bits (77), Expect = 0.16 Identities = 65/274 (23%), Positives = 106/274 (38%), Gaps = 27/274 (9%) Frame = +1 Query: 2857 EEKRSLLFVVSEAVVFNA-GDGGESV--KKKSFTDDLIGQGEVFTQSLAVPRAILWVLVL 3027 E + L + +E VF G E + K KSF D + G G FT+ + P ++ Sbjct: 115 ELQNRLRALATETSVFTRFGKAAERIGGKMKSFGDSVAGVGAAFTRGVTAP-------IV 167 Query: 3028 SFFGFIVWSAIAKIDVSIPAMGKLEPTGEVKSIQAA--------IEGEVRSLFVEDGH-- 3177 + G+ + +A +D G + E ++ A + E+ + VE H Sbjct: 168 AGAGYAIKAA---VDYESAFAGVKKTVDETATVSYAKLSQGIRQMAKELPASAVEIAHVA 224 Query: 3178 ------RVKKGDVLLELVPVLSVGEESKLKSLQIGLSNARQQYATESAMLAKLRSLLNSA 3339 VK GD+L ++ +GE + L + + S A+ A + + + S SA Sbjct: 225 EAAGQLGVKTGDILSFSRTMIDLGESTNLSAEEAATSIAK--IANITGLASSEYSRFGSA 282 Query: 3340 AV---SEFEVEQKKLDVLKLQAQIA---DLAEQINKQSYMANQATGYESITAPVNGTVF- 3498 V + F +K D++ + +IA LA N++ A I A GT Sbjct: 283 VVALGNNFATTEK--DIVAMTNRIAASGKLAGLTNQEMLALATAMSSVGIEAEAGGTAMT 340 Query: 3499 -DLQVKKGTVVSSGQVILKVVPDDNLTARAYISN 3597 L + V S G DNL A I+N Sbjct: 341 QSLSAIERAVASGG---------DNLNKFAQIAN 365 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,421,977 Number of Sequences: 14420 Number of extensions: 664356 Number of successful extensions: 2006 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1750 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2001 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 3010519224 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig26 (3715 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,902,012 Number of Sequences: 14420 Number of extensions: 424525 Number of successful extensions: 1165 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 933 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1165 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1829576839 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig27 (7254 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046877.1|putative non-heme haloperoxidase 48 2e-05 ref|NP_817650.1|gp61 40 0.003 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 47.8 bits (112), Expect = 2e-05 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 1/105 (0%) Frame = -2 Query: 5510 LGSGHPLLMIMGYGSTMNLWESTLLEKLAEH-FKVIVFDNRGIGGTQTGTQPFSIGQFAE 5334 +G+G PL+ + G + +E +L +LAEH F+VI D G + + ++ Sbjct: 19 VGTGAPLVFLHGLSVSAKAYEE-MLTRLAEHGFRVIALDAANHGRSGSLPTGHTVEDMTR 77 Query: 5333 DSAALLQSLDVEHAHVLGWSMGSLIAQELALRHPSLISKLILYAA 5199 + L LD+ A G SMG + E+A RHP ++ +L A Sbjct: 78 VTLKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDA 122 >ref|NP_817650.1|gp61 Length = 274 Score = 40.0 bits (92), Expect = 0.003 Identities = 27/104 (25%), Positives = 47/104 (45%) Frame = -2 Query: 5510 LGSGHPLLMIMGYGSTMNLWESTLLEKLAEHFKVIVFDNRGIGGTQTGTQPFSIGQFAED 5331 +G+G PL+ + G + +E L+E F V D G T + ++ + Sbjct: 21 VGTGVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFGHTVEEMTRV 80 Query: 5330 SAALLQSLDVEHAHVLGWSMGSLIAQELALRHPSLISKLILYAA 5199 + L +L ++ A +G SMG + E+A R+P + IL A Sbjct: 81 TLRALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILLDA 124 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,156,618 Number of Sequences: 14420 Number of extensions: 812072 Number of successful extensions: 2201 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1927 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2199 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3550141114 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig28 (9406 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,858,619 Number of Sequences: 14420 Number of extensions: 994342 Number of successful extensions: 2492 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1946 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2492 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4559738469 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig29 (7899 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164705.1|orf70 61 2e-09 ref|NP_932398.1|recombination endonuclease subunit 60 4e-09 ref|YP_024504.1|putative exonuclease 58 1e-08 ref|YP_195153.1|recombination protein gp46 55 9e-08 ref|NP_899322.1|recombination endonuclease subunit 47 4e-05 ref|NP_943902.1|gp46 recombination endonuclease subunit 44 2e-04 ref|NP_049669.1|gp46 recombination endonuclease subunit 41 0.002 ref|NP_891605.1|recombination endonuclease subunit 40 0.005 ref|NP_958209.1|gene 33 protein 38 0.019 ref|NP_861753.1|gp46 recombination endonuclease subunit 37 0.032 ref|NP_852486.1|Exonuclease SbcC 34 0.27 ref|NP_795605.1|putative phage integrase 33 0.35 >ref|YP_164705.1|orf70 Length = 638 Score = 61.2 bits (147), Expect = 2e-09 Identities = 48/206 (23%), Positives = 95/206 (46%), Gaps = 3/206 (1%) Frame = +3 Query: 1464 MKILSLRFKNLNSLVGEWFIDFSAPEYVSDGIFAITGPTGSGKSTILDAISLALYGQTPR 1643 MK+ +++ +N S+ +DF S G+ I+G G GKS+I AI AL+ +T + Sbjct: 1 MKLETIKIRNFRSIRS---LDFKID---SRGLTLISGKNGQGKSSIYAAILYALFNKTQK 54 Query: 1644 LEKVNSSTNEIMSRHTGECFAEVVFETGTGRFR-CHWAQHRARRHPL--GILQAQKHEIA 1814 + ++ N++ ++T +E R+R C + +H+ + + + + +K + Sbjct: 55 GQTADAIINDVAKKNTSVILN---YENAGVRYRVCRYRKHKENHNKVLFYVNEVEKTSSS 111 Query: 1815 DALTGRVIETKLQDTLQAVVERTGMDFDQFTRSMLLAQGGFAVFLQSPPDERAPVLEQIT 1994 + LT +IE + GM FD S +L F S +R ++E IT Sbjct: 112 NKLTDELIEASV-----------GMSFDTMLNSFVLGDSLVTNFSVSTDKQRKEIIEDIT 160 Query: 1995 GTAIYSAISVKVHERNRAEQQELETL 2072 +IY S ++ + ++ L+++ Sbjct: 161 NISIYKKASSVASDKYKEAKEVLDSV 186 Score = 43.5 bits (101), Expect = 3e-04 Identities = 27/97 (27%), Positives = 44/97 (45%) Frame = +3 Query: 4800 YQGGEIRSTKNLSGGESFLVSLALALGLSQMSSRNVSVDSLFLDEGFGTLDEDALETALQ 4979 ++ E +LS GE +AL+L L S N ++ LFLDE F +LD ++ + Sbjct: 538 FRDAESTDYDSLSSGEQRRFDVALSLSLQDYVSSNSGINVLFLDEIFDSLDAVGVDKVMT 597 Query: 4980 TLAGLHESGKLIGIISHVPVLRERIGTRIEVKPLNGG 5090 L + + +ISH L++ I+V G Sbjct: 598 LLKEKSKQYSSVFVISHSTELKDNFDNEIKVVKTEAG 634 >ref|NP_932398.1|recombination endonuclease subunit Length = 570 Score = 60.1 bits (144), Expect = 4e-09 Identities = 110/539 (20%), Positives = 214/539 (39%), Gaps = 32/539 (5%) Frame = +3 Query: 1464 MKILSLRFKNLNSLVGEWFIDFSAPEYVSDGIFAITGPTGSGKSTILDAISLALYGQTPR 1643 + + +R+KN+ S VG+ ID + EY TG G+GKST+L+AI AL+G+ R Sbjct: 9 LDFIRVRYKNIMS-VGDEPIDLTLNEYAKT---LCTGKNGAGKSTMLEAIYFALFGKPFR 64 Query: 1644 LEKVNSSTNEIMSRHTGECFAEVVFETGTGRFRCHWAQHRARRHPL--GILQAQKHEIAD 1817 + + N++++ +TG+ ++ E W ++ + + + GI + ++ A Sbjct: 65 ----DITKNQLINENTGK---NMLVEL--------WLEYEEKVYHITRGI---KPNKFAI 106 Query: 1818 ALTGRVIE--TKLQDTLQAVVERTGMDFDQFTRSMLLAQGGFAVFLQSPPDERAPVLEQI 1991 G ++ ++D E GM+ F + ++L G+ F+Q ER ++E + Sbjct: 107 TCDGAQVDAAASIKDFQAYFEEMIGMNATSFKQIVVLGTAGYTPFMQLKAPERRKLVEDL 166 Query: 1992 TGTAIYSAISVKVHERNRAEQQELETLRVECSGIIXXXXXXXXXXXXXXXXXXXXXXGII 2171 ++ + + R + QE+ ++ V + I + Sbjct: 167 LEVSVLAQMDKLNKARIKELNQEIASVDVTINHI---NTQLKTYHDHQNNSNASNDAAVA 223 Query: 2172 NRQSEAEASLRWLRQILVMKGELADMESDFEKLELSDRDFSGDRERMELARRAA------ 2333 + Q+ E + +QI + L + ++FE E D + M A+ AA Sbjct: 224 DHQAVFEEARDKAKQIKSIIDSLTEQLTNFEMPESPANDLG--KFTMARAKAAAQKEQFA 281 Query: 2334 ---------GFEPAYM-------IIXXXXXXXXXXXXXKSGAEHELERLN---TDFTEHT 2456 G P M ++ A+ +E LN ++ E T Sbjct: 282 GIAHMHEDGGVCPTCMQQFDDPDLLTKLHDKMSVIQGQLDKADDRIEELNQQMVEYNEAT 341 Query: 2457 ERFREAEQKLEIFKGQEKELSMVVREVRALDIRISGKREQCDEMAAEIKALCERISASDS 2636 RFR+ + +L +++ +S+ V + +A I + + EI L + + A Sbjct: 342 VRFRDVQTQL---NNEKQSISLYVNQAKAAKAAIERLQAARPDYTGEITKLNDELVAK-- 396 Query: 2637 IICGIKREMEQERTEAEDSESYLAEHGTDSRLAAS-LSGIEALVLQYEEAQAEERDAGVL 2813 K E+E+E+ + L + G + + A + + Y E E D G Sbjct: 397 --INTKSEIEREKHQRSMISDLLKDSGIKAVIMARYIPYFNNRIAHYLEIM--EADFGFT 452 Query: 2814 L-AERHKLFENAKTLLLNFQPETVRAGEAFDQS-RFRWEELSATLASLLQGTDISNLRM 2984 L AE ++ ++A ++ + D + F W + LAS + G D++ L M Sbjct: 453 LDAEFKEVIKSAGRSTFSYNSFSQGEKARIDMAVMFAWRD----LASEVSGVDVNALFM 507 >ref|YP_024504.1|putative exonuclease Length = 639 Score = 58.2 bits (139), Expect = 1e-08 Identities = 41/168 (24%), Positives = 83/168 (49%), Gaps = 1/168 (0%) Frame = +3 Query: 1581 GSGKSTILDAISLALYGQTPRLEKVNSSTNEIMSRHTGECFAEVVFETGTGRFRC-HWAQ 1757 GSGKST++ AI+ ALYG+T + K + N I ++T ++ F+ G + + + Sbjct: 44 GSGKSTLISAITYALYGKTEKGLKADDVVNNIEKKNTS---VKLKFDIGEDSYLIERYRK 100 Query: 1758 HRARRHPLGILQAQKHEIADALTGRVIETKLQDTLQAVVERTGMDFDQFTRSMLLAQGGF 1937 + ++ + + +K EI + T V + ++QD G++F+ + +++ QG Sbjct: 101 DKENKNKVKLFVNEK-EITGS-TNDVTDKQIQDLF-------GIEFNTYVNAIMYGQGDI 151 Query: 1938 AVFLQSPPDERAPVLEQITGTAIYSAISVKVHERNRAEQQELETLRVE 2081 +F Q+ + +LE IT T +Y E+ + +++ +R E Sbjct: 152 PMFSQATDKGKKEILESITKTDVYKQAQDVAKEKVKEVEEQQNNIRQE 199 >ref|YP_195153.1|recombination protein gp46 Length = 576 Score = 55.5 bits (132), Expect = 9e-08 Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 4/171 (2%) Frame = +3 Query: 1566 ITGPTGSGKSTILDAISLALYGQTPRLEKVNSSTNEIMSRHTGECFAEVVFETGTGRFRC 1745 I G G+GKSTILDA++ +L+G+ R K+N + S + +C E+ F G F+ Sbjct: 32 IVGDNGAGKSTILDALTFSLFGKPFR--KINKPM-LVNSINEKDCITEIEFSIGKNEFK- 87 Query: 1746 HWAQHRARRHPLGILQAQKHEIADALTGRVI---ETKLQDTLQAVVERT-GMDFDQFTRS 1913 +++ K I + + E+ L D + + M++ FT+ Sbjct: 88 -------------VIRGIKPSIFEIYCNEKLWNQESTLVDQQKNFEQNVLKMNYKSFTQI 134 Query: 1914 MLLAQGGFAVFLQSPPDERAPVLEQITGTAIYSAISVKVHERNRAEQQELE 2066 ++L F F++ P +R ++E I ++S +++ + ++ R +E++ Sbjct: 135 VVLGSSTFVPFMRLPVAQRREIIEDILDIQVFSVMNILLKDKIRENNEEIK 185 >ref|NP_899322.1|recombination endonuclease subunit Length = 745 Score = 46.6 bits (109), Expect = 4e-05 Identities = 104/529 (19%), Positives = 205/529 (38%), Gaps = 13/529 (2%) Frame = +3 Query: 1566 ITGPTGSGKSTILDAISLALYGQTPRLEKVNSSTNEIMSRHTGECFAEVVFETGTGRFRC 1745 ITG G+GKST ++AI ALYG+ R K N + + + E+ F+ ++ Sbjct: 32 ITGTNGAGKSTYIEAICFALYGKPFRNIKKTQIVNAVNKK---KLLVEITFQDNKHVYKI 88 Query: 1746 HWAQHRARRHPLGILQAQKHEI---ADALTGRVIETKLQDTLQAVVERTGMDFDQFTRSM 1916 + ++ K EI + + QD L+ + + M+ F + Sbjct: 89 -----------VRGIKPNKFEIYKDDELIPQEAAVADYQDMLEKNILK--MNLSTFKQIA 135 Query: 1917 LLAQGGFAVFLQSPPDERAPVLEQITGTAIYSAISV--KVHERNRAEQQELETLRVECSG 2090 +L G+ F+ P +R ++E + I+S ++ KV + EQ Sbjct: 136 VLGTAGYTPFMLLPAAKRREIVEDLLDIGIFSDMAALNKVALKQLNEQ------------ 183 Query: 2091 IIXXXXXXXXXXXXXXXXXXXXXXGIINRQSEAEASLRWLRQILVMKGELADMESDFEKL 2270 + +EA+ R GEL + F+K Sbjct: 184 ---------------------------IKDTEADIERR--------MGEL-KLHIQFQKE 207 Query: 2271 ELSDRDFSGDRERMELARRAAGFEPAYMIIXXXXXXXXXXXXXKSGAEHELERLNTDFTE 2450 + +RD GD ++E + A E A + E+ +L + +E Sbjct: 208 QQDNRD--GDLAQLEARKSEAEAELAPL-------------------SFEISQLESQISE 246 Query: 2451 HTERFREAEQKL--EIFKGQEKELSMVVREVRALDIRISGKREQCD-EMAAEIKALCERI 2621 +++ R+ ++KL E+ +E++ + E+ ALD E+ + E AEI AL + Sbjct: 247 DSKKLRDLKEKLAFELSAAEEEQAT----ELIALDAEHQANIEKIEAEQKAEIDALKAKQ 302 Query: 2622 SASDSIICGIKREMEQERTEAEDSESYLAEHGTDSRLAASLSGIEALVLQYEEAQAEERD 2801 ++ ++I + + + +D L + +++L + +A D Sbjct: 303 TSEQNVIDELNEQAVLDLD--KDHSQALIDFDAETKLNTP---------EAPDADEIAAD 351 Query: 2802 AGVLLAERH---KLFENAKTLLLNFQPE--TVRAGEAFDQSRFRWEELSATLASLLQGTD 2966 +L+ + KL EN + N E T + + D ++ + A +A+L + T Sbjct: 352 TSTVLSNKKEITKLKENKEFFEKNGDCECSTCKQTISSDFAQSVIDMADAQIATLTEETK 411 Query: 2967 ISNLRMAVQELEERSRNLEILSVRIAAMAEREKRIVTLRETLPAIDSVQ 3113 + ++ + + ++R+ E LS R + + E++ T R TL S + Sbjct: 412 VLAEKIRAAQAQSKARS-EYLSTRASERSALEEKQRTERSTLIKTQSTE 459 >ref|NP_943902.1|gp46 recombination endonuclease subunit Length = 772 Score = 44.3 bits (103), Expect = 2e-04 Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 4/176 (2%) Frame = +3 Query: 1566 ITGPTGSGKSTILDAISLALYGQ----TPRLEKVNSSTNEIMSRHTGECFAEVVFETGTG 1733 +TG G+GKST ++A++ LYG+ + + VNS + + V E G Sbjct: 33 VTGTNGAGKSTFIEALTFLLYGKAFRDVTKAQLVNSQNKKGL---------HVEGELSVG 83 Query: 1734 RFRCHWAQHRARRHPLGILQAQKHEIADALTGRVIETKLQDTLQAVVERTGMDFDQFTRS 1913 + R H R IL+ K+ + L T+ Q + E G+ +D F + Sbjct: 84 KDR----YHIERGIKPNILKITKN--GEPLKEVASATEYQSYFE--TELLGISYDSFKQI 135 Query: 1914 MLLAQGGFAVFLQSPPDERAPVLEQITGTAIYSAISVKVHERNRAEQQELETLRVE 2081 ++L G+ F++ P +R ++E + ++ + + ++ EL+ LRV+ Sbjct: 136 IVLGTAGYKPFMELPAGKRRELVEDLLDVSVIGDMDKINKGIIKEKKGELDLLRVK 191 >ref|NP_049669.1|gp46 recombination endonuclease subunit Length = 560 Score = 40.8 bits (94), Expect = 0.002 Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 3/180 (1%) Frame = +3 Query: 1461 DMKILSLRFKNLNSLVGEWFIDFSAPEYVSDGIFAITGPTGSGKSTILDAISLALYGQTP 1640 + K+ +++KN+ S VG+ ID + ITG G GKST+L+AI+ L+G+ Sbjct: 3 NFKLNRVKYKNIMS-VGQNGIDIQLDKVQKT---LITGRNGGGKSTMLEAITFGLFGKPF 58 Query: 1641 RLEKVNSSTNEIMSRHTGECFAEVVFETGTGRFRCHWAQHRARRHPLGILQAQKHEIADA 1820 R K N S + E E+ W ++ +++ I + QK + + Sbjct: 59 RDVKKGQLIN---STNKKELLVEL------------WMEYDEKKY--YIKRGQKPNVFEI 101 Query: 1821 LTG--RVIETKLQDTLQAVVER-TGMDFDQFTRSMLLAQGGFAVFLQSPPDERAPVLEQI 1991 R+ E+ QA E+ GM + F + ++L G+ F+ R ++E + Sbjct: 102 TVNGTRLNESASSKDFQAEFEQLIGMSYASFKQIVVLGTAGYTPFMGLSTPARRKLVEDL 161 >ref|NP_891605.1|recombination endonuclease subunit Length = 560 Score = 39.7 bits (91), Expect = 0.005 Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 8/184 (4%) Frame = +3 Query: 1476 SLRFKNLNSLVGEWFIDFSAPEYVSDGI--FAITGPTGSGKSTILDAISLALYGQTPRLE 1649 +LR++N+ S+ E E DG ITG G+GKST+++A+ L+G+ R Sbjct: 8 TLRYQNIMSVGAE------PVEIQLDGFKKTLITGVNGAGKSTMIEALCFVLFGKPFRSI 61 Query: 1650 KVNSSTNEIMSRHTGECFAEVVFETGTGRFRCHWAQHRARRHPLGILQAQKHEIADA-LT 1826 K N + + + EV FE F I + QK E+ + Sbjct: 62 KKGQLINSVNKK---KLLVEVWFELDGKEFY--------------IKRGQKPEVFEVHRD 104 Query: 1827 GRVIETK-----LQDTLQAVVERTGMDFDQFTRSMLLAQGGFAVFLQSPPDERAPVLEQI 1991 G+ I+ Q+ + ++ GM+ F + ++L G+ F+ P R ++E + Sbjct: 105 GQKIDESASTKDFQEYFEGII---GMNLASFKQIVVLGTAGYVPFMSLPAAGRRKLVEDL 161 Query: 1992 TGTA 2003 A Sbjct: 162 LDIA 165 >ref|NP_958209.1|gene 33 protein Length = 322 Score = 37.7 bits (86), Expect = 0.019 Identities = 32/85 (37%), Positives = 41/85 (48%) Frame = +3 Query: 3528 AEQVLRLLSEAHCAAEKEAERLGKAILLEKQLLFSESEAQRLHRLFTEAVRAEEKAEYEV 3707 AE + +E AA +EAE A E++ + +E AQR EA A E+AE E Sbjct: 179 AEAEAKAKAEIEAAARREAEAKAAAERAERERIEAEQRAQR------EAKEAAERAERE- 231 Query: 3708 KTAGMEVERAMDVQRKIQERKAAIR 3782 K A +E ER RK QE IR Sbjct: 232 KQAAIEAER-----RKAQEEAERIR 251 >ref|NP_861753.1|gp46 recombination endonuclease subunit Length = 562 Score = 37.0 bits (84), Expect = 0.032 Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 3/178 (1%) Frame = +3 Query: 1467 KILSLRFKNLNSLVGEWFIDFSAPEYVSDGIFAITGPTGSGKSTILDAISLALYGQTPRL 1646 K+ +R++N+ S+ G ID + ITG G GKST+L+AI+ L+G+ R Sbjct: 5 KLNRVRYQNIMSVGGNP-IDIQLDKVQKT---LITGKNGGGKSTMLEAITFGLFGKPFRD 60 Query: 1647 EKVNSSTNEIMSRHTGECFAEVVFETGTGRFRCHWAQHRARRHPLGILQAQKHEIADALT 1826 K N S + E E+ W + +++ I + QK I + Sbjct: 61 VKKGQIIN---STNKKELLVEL------------WMEFDDKKY--FIKRGQKPNIFEISV 103 Query: 1827 G--RVIETKLQDTLQAVVERT-GMDFDQFTRSMLLAQGGFAVFLQSPPDERAPVLEQI 1991 R+ E+ Q ER+ GM + F + ++L G+ F+ R ++E + Sbjct: 104 DGVRLDESASSRDFQEEFERSIGMSYASFKQIVVLGTAGYTPFMALSTPARRKLVEDL 161 >ref|NP_852486.1|Exonuclease SbcC Length = 518 Score = 33.9 bits (76), Expect = 0.27 Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 3/193 (1%) Frame = +3 Query: 1491 NLNSLVGEWFIDFSAPEY-VSDGIFAITGPTGSGKSTILDAISLALYGQTPRLEKVNSST 1667 N+N + E F + + + +G+ ITGP+ SGK++I+ A+ + + VN S Sbjct: 4 NINEIFVEGFQSHTNSHFNLGNGLNVITGPSDSGKTSIIRAVRWIAFNEPQGEAFVNESV 63 Query: 1668 NEIMSRHTGECFAEVVFETGTGRFRCHWAQHRARRHPLGILQAQKHEIADALTGRVIE-T 1844 +A V G ++HR + +Q ++ G V E + Sbjct: 64 G----------YATVAIHLDNGII---ISKHRRKGKTSYRIQTDPGDV-----GSVFEKS 105 Query: 1845 KLQDTLQAVVERTGMDFDQFTRSMLLAQGGFAVFLQS-PPDERAPVLEQITGTAIYSAIS 2021 ++ + ++ ++ T F F ++ A A FL S P A VL ++ GT Sbjct: 106 EVPEEVKQLLGITKQTFGDFVTALNFAFQLEAPFLISETPSSGAKVLGKLAGTEAVDLAV 165 Query: 2022 VKVHERNRAEQQE 2060 V + A +QE Sbjct: 166 KSVSKDTYAARQE 178 >ref|NP_795605.1|putative phage integrase Length = 388 Score = 33.5 bits (75), Expect = 0.35 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Frame = -2 Query: 4829 FGRSYLPPLIVIDHIKFKRTLYVTNKKITVSHIHKLSVGMVNHDLKGQPLGE-IAKLLSV 4653 FG + + I++ + L TN + TV HI+ + M+NH +K + L + I K + + Sbjct: 109 FGNKKMNAINRIEYENYINNLLNTNSRSTVKHIYDVFSIMLNHAVKNKMLDDNIIKFIDI 168 Query: 4652 GRTD-KLVQKR 4623 G ++ K + KR Sbjct: 169 GDSEIKPINKR 179 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,306,861 Number of Sequences: 14420 Number of extensions: 804988 Number of successful extensions: 2370 Number of sequences better than 0.5: 12 Number of HSP's better than 0.5 without gapping: 2003 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2365 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 3842006368 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig30 (5697 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_996646.1|hypothetical protein predicted by GeneMark 35 0.067 >ref|NP_996646.1|hypothetical protein predicted by GeneMark Length = 357 Score = 35.4 bits (80), Expect = 0.067 Identities = 39/146 (26%), Positives = 57/146 (39%) Frame = -2 Query: 1502 VGIQGCATYGKISGIPSEGQKSVFKDGRKTLISIKQNTVALAPNTETVTSGQKADFVIAV 1323 VG G AT G+ SG + G+ G + ++ A A T T+G+ Sbjct: 148 VGALGTATAGE-SGTATAGESGTATAGNYGTATAGESGTATAGYRGTATAGE-------- 198 Query: 1322 HNGTSQDILFSTDDVTATANTNGQLTTLKVFSYDELVAEEKNRRAWAAVAVGLQGAAESM 1143 +GT+ + + TATA +G T +Y A E G + + Sbjct: 199 -SGTAT----AGESGTATAGESGTATA---GNYGTATAGESGTATAGYRGTATAGESGTA 250 Query: 1142 NAANAGYSNAFGTYSGSTYSNYGTKT 1065 A N G + A G Y +T NYGT T Sbjct: 251 TAGNYGTATA-GNYGTATAGNYGTAT 275 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,149,585 Number of Sequences: 14420 Number of extensions: 596544 Number of successful extensions: 1499 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1343 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1497 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2781323316 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig31 (8131 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046684.1|putative ss-DNA-specific endonuclease 108 1e-23 ref|NP_599056.1|bactoprenol glucosyltransferase 97 3e-20 ref|NP_720276.1|GtrB 95 1e-19 ref|YP_006358.1|GtrB 95 1e-19 ref|NP_059582.1|O-antigen conversion protein 95 1e-19 ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase 46 7e-05 ref|NP_803872.1|ORF306 39 0.007 >ref|NP_046684.1|putative ss-DNA-specific endonuclease Length = 576 Score = 108 bits (269), Expect = 1e-23 Identities = 139/579 (24%), Positives = 253/579 (43%), Gaps = 38/579 (6%) Frame = +3 Query: 3954 PLSRALCNRGIATFDEAKDFFRPSIHQLPSPFLFKDMLRAVDRVADAL----EKREKIML 4121 PL+ L NRGI ++ K F ++ S + L +D+ AD L + K+ + Sbjct: 15 PLATILKNRGI---EDPKLF----VNVDQSSVIHYSKLNNIDKAADCLIRHLNNKNKLFV 67 Query: 4122 YGDYDVDGTTGTALLYLFLQE--RGAEVSYYINDRFTEGYGLSREGIETAVARNTGLIIT 4295 D DVDG T ++++ ++++ A + Y I D G + + + L+I Sbjct: 68 QVDSDVDGYTSSSIIINYIKKICPKANIHYRIQDGKEHGIFID------TIPDDVDLVII 121 Query: 4296 VDCGIRAEEQILLCNDHGIDVIICDHHEPHELPPAYAILNPKLGDCSYPFRELCGCGVAF 4475 D G E+ N G ++I+ DHHE + ++N +L +Y + L G G+A+ Sbjct: 122 PDAGSSQFEEHEALNKRGTEIIVIDHHECERVSEHAIVVNNQLSP-NYSNKTLTGAGMAY 180 Query: 4476 RFIQAIAEQLDTGMESWQKYFDLVAIATAADMVVLEK-ENRTYVREGLQRIRTSPRSSLA 4652 +F QAI E+L+ +++ DLV+I AD E R ++ EGL++I+ L Sbjct: 181 KFCQAIDEKLN--KNEAEQFLDLVSIGNIADSADSRNLETRYFMNEGLKKIKHPLLKKLF 238 Query: 4653 QMLGIMNVDADMMSMFTIAFGIAPRINAAGRM----ESATLAVKWLLS-DSVEDSQQHAG 4817 + + D S+ F I P INAA R+ E + +LLS + V ++ Sbjct: 239 KKQE-FSTKGD-KSIQNTQFFINPLINAAIRVGSSEEKDQMMRAFLLSKEKVPYKKRGQS 296 Query: 4818 ELE-------------QLNALRRKIDAEIFIQAEKMIAGHFASYCSSIVLYDEEWHLGVL 4958 E E L A +++I ++ + I + +++Y E G+L Sbjct: 297 ETELVSIHEDTVRILGNLKAKQKRIVDAAGVEIKNRIEEKSLTANKVLIVYIE----GIL 352 Query: 4959 -----GIVASKMLEKYYLPTVIMGN----MNGLVKGSVRSVDGLNIYEVLQECGE--YLE 5105 G+VA+++ E+Y P ++ N ++ GS+R D I + +E + E Sbjct: 353 DKSLTGLVANQLAEEYKKPVLLARNDPEKGKDILSGSIRGYDKGFIKDFKKELIDTGLFE 412 Query: 5106 QFGGHNQAAGITLRPENLAGFRKRFDEICRDLQPVELRQKEVLIDSVLALEDVTDKFMNV 5285 GH AAG ++ +NL K +E +D+ E Q +D + + + +F+ Sbjct: 413 FVEGHPNAAGFAIKRQNLILVNKVLNEKFKDINIEEDIQN---VDFEIPAKRLRKEFILQ 469 Query: 5286 LAEFAPY-GYGNREPLFVSDQVLLQGRPRLLKERHVKFSVRDKHDRIFDVIGFDRRDIYE 5462 L + Y GY EPL + ++ + K +V+ KH I + + + Sbjct: 470 LDGYKDYWGYKVEEPLIAITDLEIEVEQIEHLGKKNKTTVKFKHGDIEYIRFKSDENYFN 529 Query: 5463 DLAASN-TPVVAMVYSLEKRSWNNREHWQIRLKDLSITQ 5576 L ASN T V+ ++ + + ++ QI + +L + + Sbjct: 530 QLTASNGTLVINVIGKAKANEYKGKKTPQIEIYELEVVR 568 >ref|NP_599056.1|bactoprenol glucosyltransferase Length = 307 Score = 97.1 bits (240), Expect = 3e-20 Identities = 80/310 (25%), Positives = 149/310 (48%), Gaps = 6/310 (1%) Frame = -1 Query: 7405 IKLSVVIPVMNEEKSIKPLFDALAA--ALGSVDHEIILVDDGSTDGTVAEIEAFAPPNAR 7232 +K+S+V+PV NEE++I + + L + EI+ ++DGS D T + I A A + Sbjct: 1 MKISLVVPVFNEEEAIPVFYKTVREFQELKPYEVEIVFINDGSKDATESIINALAVSDPL 60 Query: 7231 LVVLN--KNYGQTTAMAAGIDSAHGELIATLDGDLQNDPGDIPMMMSYLYDHDLDVIAGR 7058 +V L+ +N+G+ A+ AG+D A G+ + +D DLQ DP ++ + + D++ + Sbjct: 61 VVPLSFTRNFGKEPALFAGLDHASGDAVIPIDVDLQ-DPIEVIPHLIEKWQAGADMVLAK 119 Query: 7057 RANRK-DGMVLRKIPSAIANAIIRNITGVHIHDYGCTLKIFKKDVAKNLGLYGELHRFIP 6881 R++R DG + RK + I+ I + ++ ++V +N+ L E + F+ Sbjct: 120 RSDRSTDGRLKRKTAEWFYK-LHNKISTPKIEENVGDFRLMSREVVENIKLLPERNLFMK 178 Query: 6880 VLVQLYGAKMEEVDVRHHPRQFGESKYGIGRTFKVLSDLLFMVFFQKYSQKPMHXXXXXX 6701 ++ G + + V+ R G SK+ + + L + +S P+ Sbjct: 179 GILSWVGGQTDVVEYVRAERVAGISKFNGWKLWN-----LALEGITSFSTFPLRVWTYIG 233 Query: 6700 XXXXXXXLAINLYLVA-LKILGHEIGGRPLLTLGVILTFIGIQLITTGFIAEFIMRTYYE 6524 +++ + G+ + G P L + IL G+QLI G + E+I R Y E Sbjct: 234 LFVASISFLYGAWMIIDTLVFGNPVRGYPSLLVS-ILFLGGVQLIGIGVLGEYIGRIYIE 292 Query: 6523 SQNKKPYIIK 6494 S+++ YIIK Sbjct: 293 SKHRPKYIIK 302 >ref|NP_720276.1|GtrB Length = 325 Score = 94.7 bits (234), Expect = 1e-19 Identities = 76/311 (24%), Positives = 147/311 (47%), Gaps = 6/311 (1%) Frame = -1 Query: 7405 IKLSVVIPVMNEEKSIKPLFDALAA--ALGSVDHEIILVDDGSTDGTVAEIEAFAPPNAR 7232 +K+S+V+PV NEE +I + + L + EI+ ++DGS D T + I A + Sbjct: 16 MKISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPL 75 Query: 7231 LVVLN--KNYGQTTAMAAGIDSAHGELIATLDGDLQNDPGDIPMMMSYLYDHDLDVIAGR 7058 ++ L+ +N+G+ A+ AG+D A G+ + +D DLQ DP ++ + + D++ + Sbjct: 76 VIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQ-DPIEVIPHLIEKWQAGADMVLAK 134 Query: 7057 RANRK-DGMVLRKIPSAIANAIIRNITGVHIHDYGCTLKIFKKDVAKNLGLYGELHRFIP 6881 R++R DG + RK + I+ I + ++ + V +N+ E + F+ Sbjct: 135 RSDRSTDGRLKRKTAEWFYK-LHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFMK 193 Query: 6880 VLVQLYGAKMEEVDVRHHPRQFGESKYGIGRTFKVLSDLLFMVFFQKYSQKPMHXXXXXX 6701 ++ G K + V R G+SK+ + + L + +S P+ Sbjct: 194 GVLSWVGGKTDVVKYARAERVAGDSKFNGWKLWN-----LALEGITSFSTFPLRIWTYIG 248 Query: 6700 XXXXXXXLAINLYLVALKIL-GHEIGGRPLLTLGVILTFIGIQLITTGFIAEFIMRTYYE 6524 +++ K++ G+ + G P L + V+ G+QLI G + E+I R Y E Sbjct: 249 LFIAGMSFLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLG-GVQLIGIGILGEYIGRIYIE 307 Query: 6523 SQNKKPYIIKK 6491 ++ + YI+K+ Sbjct: 308 TKQRPKYILKR 318 >ref|YP_006358.1|GtrB Length = 310 Score = 94.7 bits (234), Expect = 1e-19 Identities = 76/311 (24%), Positives = 147/311 (47%), Gaps = 6/311 (1%) Frame = -1 Query: 7405 IKLSVVIPVMNEEKSIKPLFDALAA--ALGSVDHEIILVDDGSTDGTVAEIEAFAPPNAR 7232 +K+S+V+PV NEE +I + + L + EI+ ++DGS D T + I A + Sbjct: 1 MKISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPL 60 Query: 7231 LVVLN--KNYGQTTAMAAGIDSAHGELIATLDGDLQNDPGDIPMMMSYLYDHDLDVIAGR 7058 ++ L+ +N+G+ A+ AG+D A G+ + +D DLQ DP ++ + + D++ + Sbjct: 61 VIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQ-DPIEVIPHLIEKWQAGADMVLAK 119 Query: 7057 RANRK-DGMVLRKIPSAIANAIIRNITGVHIHDYGCTLKIFKKDVAKNLGLYGELHRFIP 6881 R++R DG + RK + I+ I + ++ + V +N+ E + F+ Sbjct: 120 RSDRSTDGRLKRKTAEWFYK-LHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFMK 178 Query: 6880 VLVQLYGAKMEEVDVRHHPRQFGESKYGIGRTFKVLSDLLFMVFFQKYSQKPMHXXXXXX 6701 ++ G K + V R G+SK+ + + L + +S P+ Sbjct: 179 GVLSWVGGKTDVVKYARAERVAGDSKFNGWKLWN-----LALEGITSFSTFPLRIWTYIG 233 Query: 6700 XXXXXXXLAINLYLVALKIL-GHEIGGRPLLTLGVILTFIGIQLITTGFIAEFIMRTYYE 6524 +++ K++ G+ + G P L + V+ G+QLI G + E+I R Y E Sbjct: 234 LFIAGMSFLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLG-GVQLIGIGILGEYIGRIYIE 292 Query: 6523 SQNKKPYIIKK 6491 ++ + YI+K+ Sbjct: 293 TKQRPKYILKR 303 >ref|NP_059582.1|O-antigen conversion protein Length = 310 Score = 94.7 bits (234), Expect = 1e-19 Identities = 76/311 (24%), Positives = 147/311 (47%), Gaps = 6/311 (1%) Frame = -1 Query: 7405 IKLSVVIPVMNEEKSIKPLFDALAA--ALGSVDHEIILVDDGSTDGTVAEIEAFAPPNAR 7232 +K+S+V+PV NEE +I + + L + EI+ ++DGS D T + I A + Sbjct: 1 MKISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPL 60 Query: 7231 LVVLN--KNYGQTTAMAAGIDSAHGELIATLDGDLQNDPGDIPMMMSYLYDHDLDVIAGR 7058 ++ L+ +N+G+ A+ AG+D A G+ + +D DLQ DP ++ + + D++ + Sbjct: 61 VIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQ-DPIEVIPHLIEKWQAGADMVLAK 119 Query: 7057 RANRK-DGMVLRKIPSAIANAIIRNITGVHIHDYGCTLKIFKKDVAKNLGLYGELHRFIP 6881 R++R DG + RK + I+ I + ++ + V +N+ E + F+ Sbjct: 120 RSDRSTDGRMKRKTAEWFYK-LHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFMK 178 Query: 6880 VLVQLYGAKMEEVDVRHHPRQFGESKYGIGRTFKVLSDLLFMVFFQKYSQKPMHXXXXXX 6701 ++ G K + V R G+SK+ + + L + +S P+ Sbjct: 179 GVLSWVGGKTDVVKYARAERVAGDSKFNGWKLWN-----LALEGITSFSTFPLRIWTYIG 233 Query: 6700 XXXXXXXLAINLYLVALKIL-GHEIGGRPLLTLGVILTFIGIQLITTGFIAEFIMRTYYE 6524 +++ K++ G+ + G P L + V+ G+QLI G + E+I R Y E Sbjct: 234 LFIAGMSFLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLG-GVQLIGIGILGEYIGRIYIE 292 Query: 6523 SQNKKPYIIKK 6491 ++ + YI+K+ Sbjct: 293 TKQRPKYILKR 303 >ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase Length = 327 Score = 45.8 bits (107), Expect = 7e-05 Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 6/165 (3%) Frame = -1 Query: 7402 KLSVVIPVMNE-EKSIKPLFDALAAALGSVDHEIILVDDGSTD-GTVAEIEAFAPPNARL 7229 K+SV++P N EK + + L + S D+E+I++DD S D G + R Sbjct: 3 KVSVIMPTFNNGEKLHRTISSVLNQTMKSTDYELIIIDDHSNDNGETLNVIKKYKGLVRF 62 Query: 7228 VVLNKNYGQTTA-MAAGIDSAHGELIATLDGDLQNDPGDIPMMMSYLYDHDLDVIAGRRA 7052 L KN G + G+ + E + LD D + + +Y +++ D+I G+ Sbjct: 63 KQLKKNSGNASVPRNTGLKMSKAEYVFFLDSDDLLHERALEDLYNYGKENNSDLIIGKYG 122 Query: 7051 NRKDGMVLRKIPSAI---ANAIIRNITGVHIHDYGCTLKIFKKDV 6926 G R +P AI N +I I LK+FKK V Sbjct: 123 VEGKG---RSVPKAIFEKGNVAKADIIDNSIFYALSVLKMFKKSV 164 >ref|NP_803872.1|ORF306 Length = 779 Score = 39.3 bits (90), Expect = 0.007 Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 7/128 (5%) Frame = +3 Query: 4188 GAEVSYYINDRFTEGYGLSREGIETAVA-----RNTGLIITVDCGIRAEEQILLCNDHGI 4352 G + Y+ +F YGL+ GI T A R G+I+ +D + QI DH + Sbjct: 95 GRLYAIYLRKKF---YGLN--GIPTVKALQTRMRKDGIIVKLDYSSKEYAQIEKIIDHDL 149 Query: 4353 DVIICDHHEPHELPPAYAILNPKLGDCSYPFRELCGCGVAFRFIQAIAEQ--LDTGMESW 4526 D ++C H H + YA+ N K G Y + V R A+AE+ +T M Sbjct: 150 D-LLCPHFSLHHIRGKYALRNRKTGQ-EYETAQF----VYMRMAMALAEKEPAETRMTHV 203 Query: 4527 QKYFDLVA 4550 + Y+ L++ Sbjct: 204 ENYYKLLS 211 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,317,580 Number of Sequences: 14420 Number of extensions: 902800 Number of successful extensions: 2623 Number of sequences better than 0.5: 7 Number of HSP's better than 0.5 without gapping: 2207 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2607 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 3959029505 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig32 (10,008 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family 75 1e-13 ref|YP_024677.1|gp04 70 4e-12 ref|NP_817947.1|gp96 45 2e-04 ref|NP_803852.1|ORF286 40 0.005 >ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family Length = 92 Score = 75.1 bits (183), Expect = 1e-13 Identities = 33/87 (37%), Positives = 57/87 (65%) Frame = -3 Query: 4756 KADLVNVIAHRTGLTKNETEAVVDCLFESIIDSLKSGKRIEIRGFGSFNIRHKNLRQARN 4577 K +L+ +A + G++K E V+ +F++I ++LKSG+++ I GFG+F +R + R+ RN Sbjct: 3 KTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKGRN 62 Query: 4576 PRTGEKVTVDPKNVPTFKISKEFKHAV 4496 P+TGE++ + P FK +K K AV Sbjct: 63 PQTGEEIDIPATKAPAFKPAKALKDAV 89 >ref|YP_024677.1|gp04 Length = 90 Score = 70.1 bits (170), Expect = 4e-12 Identities = 32/87 (36%), Positives = 50/87 (57%) Frame = -3 Query: 4756 KADLVNVIAHRTGLTKNETEAVVDCLFESIIDSLKSGKRIEIRGFGSFNIRHKNLRQARN 4577 K+DL+N +A TG+TK ++ ++ + E I SL+ G + + GFG F++ + R RN Sbjct: 3 KSDLINHVAAETGMTKTDSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTGRN 62 Query: 4576 PRTGEKVTVDPKNVPTFKISKEFKHAV 4496 P TGE++ + P FK K K AV Sbjct: 63 PATGEEIKIPASKAPKFKAGKGLKDAV 89 >ref|NP_817947.1|gp96 Length = 566 Score = 44.7 bits (104), Expect = 2e-04 Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 4/181 (2%) Frame = -1 Query: 6339 FVGVGASRVRDLFEQAKKNAPCIVFIDEIDXXXXXXXXXXXXGHDEREQTLNQLLVEMDG 6160 +VG SR+R +F + IV+IDE++ G + L +L M Sbjct: 353 YVGESESRLRGIFSKIDALGQVIVYIDEVEKALEGAVSGSADGGVSAD-ALGAILTWMQD 411 Query: 6159 FTTSENVILIAATNRPDVLDSALLRPGRFDRQITIDKPDIRGREAILKIHTRKTPLGSD- 5983 V++ A N P L LR GRFD ID P R ++ R ++ Sbjct: 412 RAGQAFVMMTA--NDPSKLPPEFLRKGRFDEVWWIDLPTRAERMSVAAATLRSNGRDAET 469 Query: 5982 --VDLTVLAKSSPGFSGXXXXXXXXXXXXXAS-REGKEEITALDFEHARDKVLMGPERRS 5812 +DL +A ++ GF+G + +G EIT D HA +V+ P R+ Sbjct: 470 LGIDLGAVADATNGFTGAEIAACIEHDAMFNAFADGGREITTEDILHAAGEVI--PLNRT 527 Query: 5811 M 5809 M Sbjct: 528 M 528 >ref|NP_803852.1|ORF286 Length = 508 Score = 40.0 bits (92), Expect = 0.005 Identities = 22/55 (40%), Positives = 31/55 (56%) Frame = -1 Query: 6192 TLNQLLVEMDGFTTSENVILIAATNRPDVLDSALLRPGRFDRQITIDKPDIRGRE 6028 TL+ LL +DG + + I TN P+ +D ALLR GR D + I P +R +E Sbjct: 407 TLSALLNGLDGIVPLDETMTILTTNHPENIDKALLRKGRVDYMVEI--PYLRDQE 459 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,380,696 Number of Sequences: 14420 Number of extensions: 1045379 Number of successful extensions: 2863 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 2337 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2857 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4862316030 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig33 (10,411 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,894,223 Number of Sequences: 14420 Number of extensions: 1249806 Number of successful extensions: 3195 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 2549 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3194 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 5014034583 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig34 (11,020 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,652,676 Number of Sequences: 14420 Number of extensions: 1151323 Number of successful extensions: 3211 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 2632 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3211 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 5316695606 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig35 (11,035 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,348,587 Number of Sequences: 14420 Number of extensions: 1199386 Number of successful extensions: 3362 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 2661 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3362 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 5324150311 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig36 (9334 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_006532.1|PpfA 33 0.41 >ref|YP_006532.1|PpfA Length = 140 Score = 33.5 bits (75), Expect = 0.41 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 7/110 (6%) Frame = -1 Query: 2542 GATWEGHTLKDAIEQIKGMAEVDRVVFVADSGLLSKENLALIEQSEKQYIVAARLKNQPE 2363 G WE H LK AIE+I +D+ V D ++ +Q+ + +KN+ E Sbjct: 33 GFAWERHQLKQAIEKI---GSLDQAVKERDKSIMDLNQTIETMNKAEQHFHSQEVKNESE 89 Query: 2362 TIK---EQILDKAGYQQ----GEQIRFKEIPLPENRRLLVSYSEKRARKD 2234 K Q+ KA Q+ +R + IP R L S SE A D Sbjct: 90 QAKYADRQMERKAEVQKQLVAAGNVR-QRIPADTQRLLRESISEFNADAD 138 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,068,040 Number of Sequences: 14420 Number of extensions: 1050599 Number of successful extensions: 3203 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 2559 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3202 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4523609805 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig37 (14,165 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_597931.1|PhoH-like protein 123 6e-28 ref|YP_006926.1|putative PhoH-like protein 112 1e-24 ref|NP_899539.1|PhoH domain protein 111 2e-24 ref|YP_195230.1|PhoH 86 1e-16 ref|YP_024453.1|putative PhoH-related protein 63 1e-09 ref|NP_543070.1|putative replication protein DnaC 45 3e-04 >ref|NP_597931.1|PhoH-like protein Length = 384 Score = 123 bits (308), Expect = 6e-28 Identities = 70/190 (36%), Positives = 105/190 (55%), Gaps = 1/190 (0%) Frame = +2 Query: 1646 KTNGQRRMVAEAKTNDILFAIGPAGTGKTYTXXXXXXXXXXXXXXXRIVLARPAVEAGES 1825 +T+ Q+ ++ KT+ +F +GPAGTGKTY +IV+ RP V G+ Sbjct: 181 RTDKQKDLIDALKTSRQVFILGPAGTGKTYVTATYASDLYTTKEIDKIVITRPHVAVGKE 240 Query: 1826 LGFLPGDLAQKIDPYLRPLYDALQDMLTAEKLKSLTEKRIIEIVPLAYMRGRTLNNAFII 2005 LGFL GDL +K P+ P+ D L+ L +++ + IE+ PLA MRGR+ +NAFII Sbjct: 241 LGFLKGDLTEKTMPWALPVLDVLEKHLGKGAVETGIKNGNIEMAPLALMRGRSFDNAFII 300 Query: 2006 LDEAQNASSKQMKMCLTRLGVNSKAIITGDVTQIDLPSELESGLINSQHILKDIK-GISF 2182 +DE QN S+ ++KM LTR+G + ++ GD Q DL GL H+ K + + Sbjct: 301 VDETQNISTHELKMLLTRVGEGTTIVLNGDAQQSDLKE--ADGLSKVIHLAKKHQLPVPI 358 Query: 2183 VHLDKSDVVR 2212 + D+VR Sbjct: 359 IEFGVDDIVR 368 >ref|YP_006926.1|putative PhoH-like protein Length = 250 Score = 112 bits (279), Expect = 1e-24 Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 2/191 (1%) Frame = +2 Query: 1646 KTNGQRRMVAEAKTNDILFAIGPAGTGKTY--TXXXXXXXXXXXXXXXRIVLARPAVEAG 1819 K Q+ + K N + IG GTGKT+ + +++L RP G Sbjct: 45 KNREQKSYINMIKNNTVTVGIGEPGTGKTFIPSVLAAQELVDIHSDIEQVILVRPNEPLG 104 Query: 1820 ESLGFLPGDLAQKIDPYLRPLYDALQDMLTAEKLKSLTEKRIIEIVPLAYMRGRTLNNAF 1999 +SLG LPGDLA+K++P+L P+ D ++ + K E++ I+ + + + RGRT NN++ Sbjct: 105 KSLGMLPGDLAEKLEPWLEPIADGMKWAIGDHAYKGYVERQKIKFLAIEHARGRTFNNSY 164 Query: 2000 IILDEAQNASSKQMKMCLTRLGVNSKAIITGDVTQIDLPSELESGLINSQHILKDIKGIS 2179 +I+DEAQN S + M LTR+G + + II GD+ Q D+ +SGL + + + Sbjct: 165 VIVDEAQNISVEAMVCLLTRVGQDCRLIICGDIAQKDIKG--DSGLALLMEVYEKYENAP 222 Query: 2180 FVHLDKSDVVR 2212 F ++ D VR Sbjct: 223 FSMIELIDNVR 233 >ref|NP_899539.1|PhoH domain protein Length = 235 Score = 111 bits (277), Expect = 2e-24 Identities = 66/201 (32%), Positives = 107/201 (53%), Gaps = 11/201 (5%) Frame = +2 Query: 1670 VAEAKTNDILFAIGPAGTGKTYTXXXXXXXXXXXXXXXRIVLARPAVEAGESLGFLPGDL 1849 V E + +FAIG AGTGKT+ ++ +P + GE LG+LPG L Sbjct: 33 VGEDGSGAFVFAIGSAGTGKTWLATTLGADMYSAFDYTEFIILKPTLSCGEELGYLPGTL 92 Query: 1850 AQKIDPYLRPLYDALQDMLTAEKLKSLTEKRIIEIVPLAYMRGRTLNNAFIILDEAQNAS 2029 +K++P+++ + L+D L A+K K KRI P+ ++RG+T +N FI++DEAQN + Sbjct: 93 EEKMEPWIQTVTQPLKDRLGADKFKCDWNKRI-HAEPIQFVRGKTFDNCFIVVDEAQNLT 151 Query: 2030 SKQMKMCLTRLGVNSKAIITGDVTQIDLPSELESG---LINSQHILKDIK-----GISFV 2185 +++ +TR+G N+K + GD+ Q D +G + ++ +I+ GI + Sbjct: 152 KTEIQTIMTRIGENTKMVFCGDLKQDDHKMIYRTGQKEISGLAWMVNEIRNQQRSGIEII 211 Query: 2186 HLDKSDVVRH---KLVRDIIN 2239 DVVR KL DII+ Sbjct: 212 EFTNKDVVRSGACKLALDIID 232 >ref|YP_195230.1|PhoH Length = 250 Score = 85.9 bits (211), Expect = 1e-16 Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 10/208 (4%) Frame = +2 Query: 1649 TNGQRRMVAEAKTNDILFAIGPAGTGKTYTXXXXXXXXXXXXXXX--RIVLARPAVEAGE 1822 T+ QR M +E ++A G AGTGKT+ ++ + R V E Sbjct: 38 TDNQRVMFSEYGQGKNIYAYGCAGTGKTFVALYLALKDVLDEYTPYDKVYIVRSLVATRE 97 Query: 1823 SLGFLPGDLAQKIDPYLRPLYDALQDML------TAEKL-KSLTEKRIIEIVPLAYMRGR 1981 +GFLPG K Y P + ++ M + E L ++L ++ I +++RG Sbjct: 98 -IGFLPGTHEDKASLYQIPYKNMVKSMFEMPDDPSFEMLYENLKQQETISFWSTSFLRGS 156 Query: 1982 TLNNAFIILDEAQNASSKQMKMCLTRLGVNSKAIITGDVTQIDLPSELE-SGLINSQHIL 2158 TL+N+ II+DE QN + ++ +TR+G +SK I GD Q DL E +G+++ Q I+ Sbjct: 157 TLDNSIIIVDECQNLNFHELDSIMTRVGQDSKIIFCGDANQSDLQKTNERTGILDFQRII 216 Query: 2159 KDIKGISFVHLDKSDVVRHKLVRDIINA 2242 + + S + D+VR LV+ + A Sbjct: 217 QKMNEFSLIEYGIEDIVRSGLVKSYLIA 244 >ref|YP_024453.1|putative PhoH-related protein Length = 246 Score = 62.8 bits (151), Expect = 1e-09 Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 15/179 (8%) Frame = +2 Query: 1691 DILFAIGPAGTGKTYTXXXXXXXXXXXXXXXRIVLARPAVEAGESLGFLPGDLAQKIDPY 1870 +IL+ AGTGKT + + P E LG PG+ +K Y Sbjct: 52 EILWNESQAGTGKTMCSVACAYADYLNKNRKLVFIISPV---SEDLGSRPGNQTEKEMAY 108 Query: 1871 LRPLYDALQDMLTAEKLKSLTEKRIIEI--------------VPLAYMRGRTLNNAFIIL 2008 L+DAL + L + +TE ++E + ++RG L +A II+ Sbjct: 109 FMGLHDALIE-LNMNPEQQITEMLMMEDNVKEDKLGDCWVSQISHLFLRGGNLRDATIII 167 Query: 2009 DEAQNASSKQMKMCLTRLGV-NSKAIITGDVTQIDLPSELESGLINSQHILKDIKGISF 2182 +EAQN ++K LTR+ NS I+ G+ QIDL +E +SG + K+ +G F Sbjct: 168 NEAQNFKRSELKKVLTRVHTKNSTVIVEGNFKQIDLKNESKSGFGDYMEYFKNYEGAVF 226 >ref|NP_543070.1|putative replication protein DnaC Length = 252 Score = 44.7 bits (104), Expect = 3e-04 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Frame = -1 Query: 13991 QVHCNAARNLTRDQLLSLSDCSFIRRGENILITGATGCGKSYLACALG----RQACSLGY 13824 +V+ +AARNL + + + + G ++++TG+ G GK++LA ++ R + Sbjct: 78 EVNPDAARNLAACRRYAENWPDMLENGTSLVMTGSCGTGKNHLAVSMAKHIIRNYLASVE 137 Query: 13823 RTLYFGMNRFLERIAQTKLDGTFVRVLNQIERTHLIILDDFGLQPLDATTRIALLQILED 13644 T + R ++ + + T V+ L+I+D+ G+Q A L +I+ Sbjct: 138 ITDVMRLTRAVKNCWRNDSEKTADEVIEHYASMDLLIIDEVGVQFGSAAEMAILQEIINA 197 Query: 13643 RYGK--QAIMITSQLPVAQWHDVIGEPTIADGIMD 13545 RY I+I++ P W + P IAD I D Sbjct: 198 RYESILPTILISNLSPEELWAFI--SPRIADRITD 230 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,640,068 Number of Sequences: 14420 Number of extensions: 1561634 Number of successful extensions: 4240 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 2899 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4231 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 6744671913 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig38 (17,864 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_052286.1|hypothetical protein 53 1e-06 ref|NP_046936.1|gp41 51 4e-06 ref|YP_006619.1|Gp39 39 0.018 ref|NP_958069.1|gp14 35 0.35 >ref|NP_052286.1|hypothetical protein Length = 194 Score = 52.8 bits (125), Expect = 1e-06 Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 15/173 (8%) Frame = -2 Query: 12403 MADSVVVLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDRYQKLMNPGFRISRFIESYTGI 12224 + D + +D ETTGL GD A + L++ + L+ P I + GI Sbjct: 16 LEDDRIFIDTETTGL----GDDAEIVEICLIDSAGFI-MLNTLVKPTKPIPAEATAIHGI 70 Query: 12223 TNEMLSGQPCCEEVMTEFSEFIAGHNIVAHNASFDRRFLDFELKRAKRVYEGAC------ 12062 T+EM+ P +++ + + V +NA +D R + K +G C Sbjct: 71 TDEMVMYAPTWKDIHGAVASLFFEYGFVIYNADYDTRLIYQTAKLYGLENDGFCYFLNER 130 Query: 12061 --CCSLLVSRRIYQDSPN-------HKLQTLVSHAGIPEIGSFHRALADAEMT 11930 C +L + Y+ P HKL +H G+ G HRALAD MT Sbjct: 131 SACAMMLYAE--YRGEPGRFKGYKWHKLVDAAAHEGVSVEGKAHRALADCRMT 181 >ref|NP_046936.1|gp41 Length = 304 Score = 51.2 bits (121), Expect = 4e-06 Identities = 41/131 (31%), Positives = 64/131 (48%) Frame = -2 Query: 12430 ITVYIMHRTMADSVVVLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDRYQKLMNPGFRIS 12251 I IMH+ + VV+D ETTGL +Y + IEI A++ GE++ L+ P I Sbjct: 8 ILAMIMHKWLKSDYVVIDTETTGLG-EYAE-IIEI-AIINMRGEVL--LDTLVKPTKPIP 62 Query: 12250 RFIESYTGITNEMLSGQPCCEEVMTEFSEFIAGHNIVAHNASFDRRFLDFELKRAKRVYE 12071 + ITNEM++ P +V + I+ H +A N+ FD R L+ + + Sbjct: 63 PEVTEINHITNEMVASAPAWCDVFPKVLAIISKHKWLAWNSGFDARMLEQTCLNTIFLNK 122 Query: 12070 GACCCSLLVSR 12038 A + +VSR Sbjct: 123 NAYYVTAMVSR 133 >ref|YP_006619.1|Gp39 Length = 202 Score = 38.9 bits (89), Expect = 0.018 Identities = 31/94 (32%), Positives = 45/94 (47%) Frame = -2 Query: 12388 VVLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDRYQKLMNPGFRISRFIESYTGITNEML 12209 V++D ETTGL D IEI ++ GEI+ L+ P I ITNEM+ Sbjct: 22 VIIDTETTGLMDF--DEIIEI-TIINMRGEIL--LNSLVKPSRPIPPEATKINHITNEMV 76 Query: 12208 SGQPCCEEVMTEFSEFIAGHNIVAHNASFDRRFL 12107 + P +V + I + +A N+SFD R + Sbjct: 77 ADAPTWSDVFPAVLKIIWKYKWLAWNSSFDARLM 110 >ref|NP_958069.1|gp14 Length = 149 Score = 34.7 bits (78), Expect = 0.35 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 4/79 (5%) Frame = -2 Query: 2251 TKQQSLRKKQVKDSLVMDSRKKSQELRQQKERLRKRVLDSL-NNTVMKARLQDSISQVV- 2078 ++QQ +R++Q D +RK+ Q +R +K R+R+ + L N MKA+ DS + V Sbjct: 37 SQQQRIRRQQAPDGTPYAARKR-QSVRSKKGRIRREMFARLRTNRFMKAKGSDSAAVVEF 95 Query: 2077 --RIQRYKDSLRQATLKER 2027 R+QR + Q LK+R Sbjct: 96 TGRVQRMA-RVHQYGLKDR 113 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,623,996 Number of Sequences: 14420 Number of extensions: 1995822 Number of successful extensions: 5598 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 3952 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5592 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 8461695445 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig39 (16,430 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_835691.1|similar to DNA helicase 53 9e-07 ref|NP_958532.1|putative protein 42 0.002 ref|NP_542568.1|putative methyltransferase-endonuclease 41 0.003 ref|YP_006479.1|DarB 41 0.003 ref|YP_164758.1|orf123 40 0.010 ref|NP_817695.1|gp17 38 0.038 ref|NP_945273.1|transcriptional regulator 36 0.14 ref|NP_542283.1|putative DNA methylase 35 0.19 ref|NP_705672.2|gp49 35 0.24 ref|NP_958155.2|gp48 35 0.24 ref|YP_164394.1|DEAD box family helicase 35 0.32 >ref|NP_835691.1|similar to DNA helicase Length = 670 Score = 53.1 bits (126), Expect = 9e-07 Identities = 50/241 (20%), Positives = 95/241 (39%), Gaps = 24/241 (9%) Frame = -2 Query: 12088 DIQIFLPEGFMXXXXXXXXXXXAIKKLNEHNGVFLADVVGLGKTFIAAQLLQQLK-GRII 11912 D + P G+ + E+ G +AD +G GKT +A ++ + R++ Sbjct: 94 DFAVPAPTGYDYFPFQKAGVHFVTEVFKEYPGALIADEMGTGKTIQSAGVINVMNPDRVL 153 Query: 11911 VICPPVLKSYWESSLHDFRVPARV----------ESLGKLDKVIRFGL--------DRFD 11786 V+CP LK WE L + V + SL +I + + +D Sbjct: 154 VVCPASLKYNWERELKRWVVHEKEIIVVNGNEVDFSLKNTIYIINYDILHRISEEDYAYD 213 Query: 11785 YVVIDEAHRFRNENTRSYADLLDICR-----GKKVILVTATPLNNTIDDIFSQLKLFQVP 11621 V++DE H +N T+ + I + G KV+ +T TP+ N +++ L++ Sbjct: 214 LVIVDECHYIKNPKTKRSGFVKSIVKSSIEQGGKVLFLTGTPIVNRPIELYPILEM---- 269 Query: 11620 KNSTIPGIPNLERYFTSLRKHFNGLDRTDPAYKHAIKEVSQEIRERILKHVMVRRTRTDV 11441 P + F K + + +E++ ++ +M+RR + DV Sbjct: 270 ------AAPKVFGNFWGYAKRYCNAYYNGYGWDFRGASNLEELQGKLRSTIMIRRLKKDV 323 Query: 11440 I 11438 + Sbjct: 324 L 324 Score = 34.7 bits (78), Expect = 0.32 Identities = 24/105 (22%), Positives = 45/105 (42%) Frame = -2 Query: 10606 GINLHRANVLIDYDLPWNPTRVLQRVGRVNRLGTKHPDIYIYNFFPTTQSDSHLQLEANI 10427 GI L RA + +L W P +LQ R++R+G + + I+ D + + Sbjct: 488 GITLTRAKTAVFVELDWVPGNILQAEDRLHRIGQEAECVDIHYIVARHTLDEN--FADYL 545 Query: 10426 TNKIQMFHDILGEDAKYLSDGEEIGSQELFDTLNRKQAYTGEDEA 10292 T KI++ L + + + ++ T +KQ E+E+ Sbjct: 546 TRKIEIIEKALNHERMKTQLEKPVSLLDVITTSEQKQQREEEEES 590 >ref|NP_958532.1|putative protein Length = 422 Score = 42.4 bits (98), Expect = 0.002 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 15/225 (6%) Frame = +2 Query: 13565 WELPNFLKVLVGGYGCGKTHIGALRSIYDS--YVNAPVPHLYVSPSYKQARKTVVISIRE 13738 ++ + +V GG GK+H + + S + N P L++ + + ++ + E Sbjct: 24 FDYSHLTEVWYGGASSGKSHGVVQKVVLKSLQHWNVPRKVLWLRKVDRTVKNSIFTDVTE 83 Query: 13739 LLDAAGVRYRFNKTNHEFAIANWNGTIWIASG-DEPDSLKGPNIGSAGIDEPFIQQKEVF 13915 L + + + I NG I++ G D+P+ +K G+ + +++ F Sbjct: 84 CLSGWNILQYCHVNRSDKTIVLPNGAIFLFQGMDDPEKIKSIK----GLSDVVMEEASEF 139 Query: 13916 D------ITLSRVRHPRAKHREIFLTGTP-EQLNWGHEVSQNDEGRYDLGLVV---GRTA 14065 + +TL R+R P+ K R+IF P +LNW ++ + YD V Sbjct: 140 NHNDYTQLTL-RLREPKHKQRQIFCMFNPVSKLNWTYQTWFDPSADYDRSRVAIHQSTYK 198 Query: 14066 DNVHLPGQFVSMLERAYDENQR--AAYMNGLFVNLTVGRVYSYFD 14194 DN L + +E + N Y G F L V+ YF+ Sbjct: 199 DNRFLDEDNIRTIEELKNTNPAYYKIYTLGEFATLD-KLVFPYFE 242 >ref|NP_542568.1|putative methyltransferase-endonuclease Length = 1288 Score = 41.2 bits (95), Expect = 0.003 Identities = 89/449 (19%), Positives = 160/449 (35%), Gaps = 65/449 (14%) Frame = -2 Query: 7528 FDVVIGNPPYFNIDIYGAGSPMQAYLKKNYSVYMDKSDILFYFFEKAVLISK---GIVAF 7358 +D V+GNPPY + I +A L++ Y D+ F+E+ + K G + + Sbjct: 693 YDYVVGNPPY--VRIQHLPDQQKAMLEQLYDSTTGNYDLYCPFYERGLDFLKDGNGKLGY 750 Query: 7357 ITSNAFLNAEKANKLRGYXXXXXXXXXXXNFENLMIFQEASITTAITLL-------YKSQ 7199 IT N F+ + +R +F + +F++A+ AI + + Sbjct: 751 ITPNQFMVTDYGEGIRRVLLRDSRLDEIYDFRDSGVFEDATNYPAIVIAEDEPDEDVREN 810 Query: 7198 QKARYLNLNASKYSDG-------------ELEKLMNIETNYIEASDW-----NADGFTLI 7073 + R + + + D E +YI+ D+ + + + L Sbjct: 811 NEIRCVRVKGNVDEDSGPSVDEEIIEGVREHRGEPGYSDDYIDVFDYPQSELDENYWPLC 870 Query: 7072 DNHHKQIIDKI-ENGKSKLKQLYKIG-SGMQTGCNDVF-----------------VFKKI 6950 ++I++K+ EN S L+++ +G QT N VF V + I Sbjct: 871 PPEERKILNKLDENRDSPLEEVVDSAFAGTQTSANKVFVVVPVNADRIEAGEQGDVVRVI 930 Query: 6949 PSG-FPEY-----LLKKRMSGENINKYSFSENSEWIL--YVENVDLFEKL--HESVR--- 6809 P G EY LLK + G +I ++ + + ++ Y E D +L + +R Sbjct: 931 PQGEEKEYEIETDLLKPWLQGRDIERWRGDWSGQHVISPYRETDDGDVELIPEDYIRDEL 990 Query: 6808 ----QYLLLNQXXXXXXXXXXXXXXXKWWNFTFAMHKEYYGYDKIWCSYRANSNVFCFDD 6641 Y ++ W+ F + E + K+ + A F D+ Sbjct: 991 PLSWDYFEAHKETLEGREGGKWEGRDDWYAFGYPKSMERFEKPKLIGAEIAGEATFMLDE 1050 Query: 6640 KGEHVGXXXXXXXXXXXXXXXFKYLLALLNSEVLTFRYYFIGKKTGNNLLEYFENGVGRL 6461 KG + ALLNS VL F I +Y + + L Sbjct: 1051 KGTWYFKAGYGVQLEPKYQNRTETFAALLNSNVLDFYLKHITSIKMGGYYKYTSHYLEPL 1110 Query: 6460 PIALAERQVQEYI-SIFVDYVRFLSDKNK 6377 P++ +E I S D V +N+ Sbjct: 1111 PVSWGSDSQRESINSTLSDIVTTFDTENR 1139 >ref|YP_006479.1|DarB Length = 2255 Score = 41.2 bits (95), Expect = 0.003 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 1/126 (0%) Frame = -2 Query: 10636 ILIATDVLSEGINLHRANVLIDY-DLPWNPTRVLQRVGRVNRLGTKHPDIYIYNFFPTTQ 10460 I+I GINLHR I + LPW P + QR GR R+G+ + ++ + Sbjct: 1474 IIICNKKAEVGINLHRGTTDIHHLTLPWTPASIAQRNGRGARVGSNRASVRVHYYCGKGS 1533 Query: 10459 SDSHLQLEANITNKIQMFHDILGEDAKYLSDGEEIGSQELFDTLNRKQAYTGEDEAGDSE 10280 D + + K DIL D S+ E + ++ + Q YT +D+ Sbjct: 1534 FDEYRL--KTLKRKAGWISDILRSDK---SEMENADANDMIE----MQMYTAKDDGERLA 1584 Query: 10279 LRYLEM 10262 + ++M Sbjct: 1585 MMQVQM 1590 >ref|YP_164758.1|orf123 Length = 599 Score = 39.7 bits (91), Expect = 0.010 Identities = 18/57 (31%), Positives = 35/57 (61%) Frame = -2 Query: 10645 NIRILIATDVLSEGINLHRANVLIDYDLPWNPTRVLQRVGRVNRLGTKHPDIYIYNF 10475 ++R+++ + VL EG+++ L+ + +V QRVGR+ RLG+ +Y+Y+F Sbjct: 514 DVRVILGSKVLDEGVSVPTLKYLLYVSGGQSEIQVGQRVGRILRLGSGKERVYVYDF 570 >ref|NP_817695.1|gp17 Length = 553 Score = 37.7 bits (86), Expect = 0.038 Identities = 34/103 (33%), Positives = 41/103 (39%), Gaps = 12/103 (11%) Frame = -2 Query: 3532 RLAAHRKPHISRTPDQR----------HRHALHQRPRTPRNRLPVRPDFR-PDLLQ-PQP 3389 R A R H+++ DQR HRH L+ P P R+P R FR PD P P Sbjct: 395 RGAPARGLHLTQRSDQRDTVVADRLHLHRHRLYWHPVEPARRVPQRRVFRVPDAAALPAP 454 Query: 3388 HRRPINTTLKRHRACPASRQPMHHKQRPVRPVQQRSHPHKRMH 3260 R P + Q H P PVQ+R H H H Sbjct: 455 LRHG-----------PDAPQHRGHGADPGAPVQRRGHLHIPRH 486 >ref|NP_945273.1|transcriptional regulator Length = 73 Score = 35.8 bits (81), Expect = 0.14 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = -1 Query: 4160 LMSLPYHPKQGAIVICDFKGFVPPEMVKRRPAVIV-SPRMRKREGLCTIVPLS 4005 +M+ Y PKQ I+ DF+ E+ KRRPAV+V S K+ G + P++ Sbjct: 2 IMNTNYIPKQQDIIWIDFEPSAGREIRKRRPAVVVSSDNYSKQTGFVAVCPIT 54 >ref|NP_542283.1|putative DNA methylase Length = 2849 Score = 35.4 bits (80), Expect = 0.19 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 23/98 (23%) Frame = -2 Query: 11845 RVESLGKLDKVIRFGLDRFDYVVIDEAHRFRN----------------ENTRSYADL--- 11723 R+ GK D + F D + +DE H F+N ++ ADL Sbjct: 906 RLLDAGKKDDGLTFDELGVDALYVDEMHEFKNLAYSTSMQRVAGLGNAAGSQKAADLFMK 965 Query: 11722 ----LDICRGKKVILVTATPLNNTIDDIFSQLKLFQVP 11621 L+ G V+ +T TPL+NT+ ++F+ ++ P Sbjct: 966 SRFILERTNGNNVVFLTGTPLSNTMAEMFTVMRYLDEP 1003 >ref|NP_705672.2|gp49 Length = 692 Score = 35.0 bits (79), Expect = 0.24 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Frame = -3 Query: 2733 TAVNSRLSPLSDVTTYTTGPVKSVTVPEAGETAASIDGSIVGFNARKLTPSGRITVTPSS 2554 TA+N+ + ++ T +G ++VP G AAS+ G + G +T + I P+S Sbjct: 65 TALNTAHANITGGTI--SGLSTPISVPSGGLGAASLSGYLYGNGTSAVTAAATIPCIPAS 122 Query: 2553 DT---VASTSSDKPGLSTAANQNRSIVFNALFST 2461 ST++ LS AA SI++ A ++T Sbjct: 123 TNATCTVSTNAALQALSVAAFPVNSIIYRAGYAT 156 >ref|NP_958155.2|gp48 Length = 690 Score = 35.0 bits (79), Expect = 0.24 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Frame = -3 Query: 2733 TAVNSRLSPLSDVTTYTTGPVKSVTVPEAGETAASIDGSIVGFNARKLTPSGRITVTPSS 2554 TA+N+ + ++ T +G ++VP G AAS+ G + G +T + I P+S Sbjct: 63 TALNTAHANITGGTI--SGLSTPISVPSGGLGAASLSGYLYGNGTSAVTAAATIPCIPAS 120 Query: 2553 DT---VASTSSDKPGLSTAANQNRSIVFNALFST 2461 ST++ LS AA SI++ A ++T Sbjct: 121 TNATCTVSTNAALQALSVAAFPVNSIIYRAGYAT 154 >ref|YP_164394.1|DEAD box family helicase Length = 526 Score = 34.7 bits (78), Expect = 0.32 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = -2 Query: 11854 VPARVESLGKLDKVIRFGLDRFDYVVIDEAHRFRNENTRSYADLLDICRGKKVILVTATP 11675 V V++L + ++++F D FD ++IDEAH ++ SY +L V+ VTATP Sbjct: 95 VVGSVQTLMREKRLMQFPKDFFDTIIIDEAHHCVSD---SYQRVLQYFDSANVLGVTATP 151 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,533,952 Number of Sequences: 14420 Number of extensions: 1622194 Number of successful extensions: 5438 Number of sequences better than 0.5: 11 Number of HSP's better than 0.5 without gapping: 3844 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5422 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 7769703927 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig40 (20,661 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061524.1|Orf28 105 2e-22 ref|YP_024726.1|gp53 57 6e-08 ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase 49 2e-05 ref|NP_958191.1|gene 15 protein 40 0.012 ref|NP_665958.1|putative glutaminase 35 0.31 >ref|NP_061524.1|Orf28 Length = 687 Score = 105 bits (262), Expect = 2e-22 Identities = 60/161 (37%), Positives = 97/161 (60%), Gaps = 5/161 (3%) Frame = +2 Query: 12635 KMNKTYRTDIDGLRAIAIIPVILFHLGY--LSNGYLGVDIFFVISGYLITGLVFNEVEEN 12808 +++ Y+ IDGLRA++I+ V+L+H G + G++GVDIFFVISG+LI + + ++++ Sbjct: 10 RISSGYKPFIDGLRALSILAVVLYHAGVPMVYGGFVGVDIFFVISGFLIVTHIVSSIQDD 69 Query: 12809 KFSVLKFYERRIRRIIP---LVLFTTLIAFILGLIFMLPDDLENLCQSVFASNFSANNIL 12979 +F +F+ RR RI+P LVLF + + I I +LP ++ V S N Sbjct: 70 RFLFGEFWARRALRILPPYLLVLF--VCSAIAPFILVLPREINEFGDQVIYSALMLVNHY 127 Query: 12980 MKITSADYWAVKNDYKPLMHTWSLGIEEQFYLLYPVIFFFL 13102 + Y+ ++ KPL+H WSL +EEQFY++ PV+ F L Sbjct: 128 F-LGQQGYFDGLSETKPLLHLWSLSVEEQFYIVAPVVIFLL 167 >ref|YP_024726.1|gp53 Length = 377 Score = 57.4 bits (137), Expect = 6e-08 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 22/170 (12%) Frame = +2 Query: 12662 IDGLRAIAIIPVILFH--------LGYLSNGYLGVDIFFVISGYLIT--GLVFNEVEE-- 12805 ++GLRA A I V++ H L + + L VD+F +ISGYL+ + + VE Sbjct: 8 LNGLRAFAAIWVVVAHCMIWGGWTLTPIPDPKLAVDLFMMISGYLMAYNARLRDSVEPMT 67 Query: 12806 NKFSVLKFYERRIRRIIPLVLFTTLIAFILGLIFMLPDDLENLCQSVFASN--------- 12958 S L+FY RR RI P + + A + F+ + L F + Sbjct: 68 RPSSWLRFYIRRYFRIAPAYYVSLVFAVVTSTTFLKGYKVLQLLNPDFWGSGGIYDPSTI 127 Query: 12959 -FSANNILMKITSADYWAVKNDYKPLMHTWSLGIEEQFYLLYPVIFFFLK 13105 ++A N+ +T A + + ++ WSL +E QFYL +P ++ ++ Sbjct: 128 TYTAGNLAAHVTFAFGLLPRYTFSTMLPDWSLSLEMQFYLAFPFLYILMR 177 >ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase Length = 320 Score = 48.9 bits (115), Expect = 2e-05 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 6/221 (2%) Frame = +3 Query: 10539 DLTDSSNLTRIISEVQPDEVYNLGAQSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLE 10718 DLTD + ++ +V+PD V NL +++ V +S+E + + + + EA Sbjct: 48 DLTDREKVRDLLRKVKPDLVINLASKTPVRLSYEDTSFMNNAIIAYNIAMAEA------- 100 Query: 10719 KKTRFYQASTSELYGLVQEIPQRESTPFY--PRSPYAVAKLYAYWITVNYRE-AYGMYAC 10889 AST+E+Y + Y P SPYAV+K+ + + +E + Sbjct: 101 ---PLIHASTAEVYPYTPYPHYYKEEEVYRTPTSPYAVSKIASEMLLAGRKEKTIILRPI 157 Query: 10890 NGILFNHESSRRGETFVTRKITRCLANITQGLEECLYVGNMNALRDWGHAKDYVRMQWMM 11069 N I SR E + + + G +E Y G+ + R W + +D+V Sbjct: 158 NTI--GRPISRLPEEARGYFFEKTVLAMLSGAKEIHYDGHPLSSRQWMYWEDHVNAYLHA 215 Query: 11070 LQQEQPRDYVIATGVQYSVRQFIEKAAVQLGITIR---WEG 11183 ++ + V V YSV + + + I + WEG Sbjct: 216 IKNLDKMEGVYNVSVHYSVYNHVLTLSETVSIVAKELGWEG 256 Score = 41.6 bits (96), Expect = 0.003 Identities = 76/322 (23%), Positives = 123/322 (38%), Gaps = 16/322 (4%) Frame = +1 Query: 8716 IYIAGHRGMVGSAIVRNLLAGGLS--------SDNLLFRT--HVELDLTCQAAVRSFFEK 8865 I I G G +GS +++ L + S+N++ +V +DLT + VR K Sbjct: 2 ILITGCTGFIGSQLLKRLNNDKVVCVANKDHFSNNIVDSAAEYVFVDLTDREKVRDLLRK 61 Query: 8866 EMPDQVYLAAAKVGGIHANNTYPAEFIYQNLMIEANIIHEAWRAGVKKLLFLGSSCIYP- 9042 PD V A+K +Y N +I NI L+ ++ +YP Sbjct: 62 VKPDLVINLASKT---PVRLSYEDTSFMNNAIIAYNI-----AMAEAPLIHASTAEVYPY 113 Query: 9043 KMVPQPMSESALLTGPLEPTNEPYAIAKIAGIKLCESYNRQYGESHGTDYRSVMPTNLYG 9222 P E + P PYA++KIA L G T + P N G Sbjct: 114 TPYPHYYKEEEVYRTP----TSPYAVSKIASEMLLA------GRKEKTII--LRPINTIG 161 Query: 9223 PGDNYHPENSHVIPALIRRFHEAKLSMECTAYFPLSNPYSVLIWGTGTPRREFLNVDDMA 9402 + PE + E T LS + G R+++ +D Sbjct: 162 RPISRLPEEAR------------GYFFEKTVLAMLSGAKEIHYDGHPLSSRQWMYWEDHV 209 Query: 9403 AASVH-VMNLDK--AVYEANTQ-PMLSHINVGCGEDITIKELAETIAKVVGYTGNIDF-D 9567 A +H + NLDK VY + + +H+ +T+ E +AK +G+ G I + + Sbjct: 210 NAYLHAIKNLDKMEGVYNVSVHYSVYNHV-------LTLSETVSIVAKELGWEGKISWME 262 Query: 9568 PSKPDGTPRKLMDSTRLNKLGW 9633 +P L+DST++ K G+ Sbjct: 263 NPRPVEPNYLLLDSTKIYKTGF 284 >ref|NP_958191.1|gene 15 protein Length = 333 Score = 39.7 bits (91), Expect = 0.012 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 22/169 (13%) Frame = +2 Query: 12665 DGLRAIAIIPVILFH------------LGYLSNGYLGVDIFFVISGYLITGLVFNEVEEN 12808 D R +A + V++ H G+ S G + V IFF ISGYLI+ + + + Sbjct: 8 DTARLVAAMMVLVSHHYALSGQPEPYLFGFESAGGIAVIIFFSISGYLISK---SAIRSD 64 Query: 12809 KFSVLKFYERRIRRIIP-LVLFTTLIAFILGLIFMLPDDLENLCQSVFASNFSANNILMK 12985 F + F +R RRI P LV + L F+ G I + F++ + +++I+ K Sbjct: 65 SF--IDFMAKRARRIFPALVPCSILTYFLFGWIL-----------NDFSAEYFSHDIVRK 111 Query: 12986 ITSADYWAVKNDYKPLMH---------TWSLGIEEQFYLLYPVIFFFLK 13105 S+ + + D H W+L +E Y++ V LK Sbjct: 112 TISSIFMSQAPDADITSHLIHAGINGSLWTLPLEFLCYIITGVAVALLK 160 >ref|NP_665958.1|putative glutaminase Length = 191 Score = 35.0 bits (79), Expect = 0.31 Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 4/41 (9%) Frame = +2 Query: 15068 ATVGIGHTRWATHGDPSDRNAHPHLNEAGD----IALIHNG 15178 A V +GHTR+AT G+ S RNAHP D L HNG Sbjct: 62 ADVALGHTRFATRGEISLRNAHPFEVRDRDGEPVAMLAHNG 102 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,689,608 Number of Sequences: 14420 Number of extensions: 2212332 Number of successful extensions: 6318 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 4108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6257 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 9711776536 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig41 (19,614 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 128 3e-29 ref|YP_077256.1|group I glycosyltransferase 49 1e-05 ref|NP_835600.1|putative glycosyltransferases 41 0.005 ref|NP_445711.1|mannosyltransferase-related protein 38 0.034 ref|NP_445726.1|first mannosyl transferase-related protein 37 0.076 ref|NP_058468.1|orf 30 35 0.22 >ref|NP_046572.1|ABC transporter Length = 705 Score = 128 bits (321), Expect = 3e-29 Identities = 110/505 (21%), Positives = 222/505 (43%), Gaps = 2/505 (0%) Frame = -2 Query: 18335 SLLNICLFLIAAFAVKNIFVYLNGQLIFRIQTKTAKKLRDDVFRSIIEMHLDYFNKNRVG 18156 SL+ I L I+ ++ IF ++ LI ++ K K++ + F + ++ +++F G Sbjct: 204 SLITITLIFISMVLIRCIFDFVRSYLIIKLSYKVDKEMSNVYFNKVTKLPINFFENREDG 263 Query: 18155 NLMNYVYNDVENVNASISSTLVNFLQNPFSIFVYMVVLFALSWQLTLFAAFTSLLIFFLI 17976 +++ +ND + S+ V + + I V+L+ + L L LL+ L Sbjct: 264 EVISR-FNDGIYIKDFFSANFVTAIIDIILILGLGVILYRTNNILFLTIILPILLLSCLA 322 Query: 17975 QLVGKNVKGLALTFQTRMGDMNSVLQEKFNGIKVIKATAFEDVELERFKEFTRDFRTLGI 17796 L ++K S+L + + + LE+F T D + L Sbjct: 323 ILFFDHLKKKNQKLMEDKAKSTSLLINFLKNMTTVYSLNKTSFFLEKF-HLTYD-KQLNS 380 Query: 17795 KIQQMRNVISP--LNETLLVAAIAGVLWFGGLQVFKGVMTANELIVFAFTLYSTMGPIKM 17622 + VIS L + + +LW G QV M+ L+ + + Sbjct: 381 TFSVAKAVISNEILKGLIQNSFTIIILWVGTRQVLNDSMSLGTLLFINTLAAFLLSSLDR 440 Query: 17621 LGNANTSIQIGLISVERLFEVLDAEAVVVNGTRSITGFSHTIRFEDVCFRYLKEPDAPNV 17442 + + + +Q ++ R F+V++ V + ++T + V +P + Sbjct: 441 ILSMQSDLQQAHVASIRFFDVVNYP-VQQDSNENLTELDFIQNIKTVNLNIGADP-MRYI 498 Query: 17441 LDHVTFEIKKGEMVALVGQSGSGKSTAVDLLLRFYDVDSGRITIDGVDIRDYDFKQLRRM 17262 ++ + + + + V ++G+SG+GKST L + Y V I ++G+DI YD +R+ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 17261 IGVVSQEVILFNDSIDANIAYGVRDEIGHGRVEQAARLANAHQFISEKPDGYNTLIGDRG 17082 I + + LF +I N+ G + +E A ++ H+FI Y+ + + G Sbjct: 559 IVYIDENPFLFKGTIKENLCMG--EIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG 616 Query: 17081 IQLSGGQRQRLAIARAMVKNPELLIFDEATSALDNESEKVVQQAIDHALANRTALVVAHR 16902 LS GQ+QRLA+ARA++ P++LI DE+ S +D ++ K++ + + + +++ H Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHR--MDCLIILITHN 674 Query: 16901 LSTVKNADRIIVMERGQVAESGNHE 16827 + ++ +V ++ ES E Sbjct: 675 DPSNFKYNKKLVFRNNRIIESSYSE 699 >ref|YP_077256.1|group I glycosyltransferase Length = 329 Score = 49.3 bits (116), Expect = 1e-05 Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 8/205 (3%) Frame = +2 Query: 10436 IHDLIKLYNKSYTAIETTHPLFLTTKKMINDAATIFVPSEFVRNELRNYFAGCEKK---- 10603 + DL+ K YT P + + +AA + VP+ +EL Y +KK Sbjct: 94 LQDLVYFKWKHYTYT----PYMYFMLRHLPEAAYVIVPTYHTLSELEQY---ADKKGLDL 146 Query: 10604 --VKVTYEG--IKPVYRQTPPDPAVLKKYDLLDNGRFFLYVGRYESRKNLDRLILAYAQL 10771 ++V Y G + Y + V + Y + N + L V Y RK+L RL ++ Sbjct: 147 PPIRVIYHGNYLNVAYTREEAVQKVREMYGIPPNKKIILNVTNYHPRKDLPRL----RRI 202 Query: 10772 PDTLKKDTLLVLICPTEKKSTKELQKKIAGAGLEKNVLHLVHVPDNDLVHLYNAALALLF 10951 + L D L+ + G G + + D +L LY + L Sbjct: 203 REKLGDDYYLITV----------------GKGNIYGDKSIGTISDTELSLLYAGSDVYLS 246 Query: 10952 VSFSEGFGLPLVEAMNCGCPAIIAN 11026 S EGF LPLVEA G PA++ + Sbjct: 247 ASQDEGFELPLVEAAAHGLPAVVTD 271 >ref|NP_835600.1|putative glycosyltransferases Length = 484 Score = 40.8 bits (94), Expect = 0.005 Identities = 20/59 (33%), Positives = 30/59 (50%) Frame = +3 Query: 12108 SRAPVYHLRNVPLVDLVKLYNAAHAFVYLSFYEGFGLPIIEAMSCGCPVLTSKTTSLGE 12284 S V+H ++ LYN A + LS EGFG+ +EA CG PV+ + T + + Sbjct: 281 SNDEVFHNGGFSREEIALLYNGADVVLQLSSNEGFGIASLEASLCGAPVVATMTGGIAD 339 Score = 37.4 bits (85), Expect = 0.058 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 19/131 (14%) Frame = +2 Query: 10682 LLDNGRFFLYVGRYESRKNLDRLILAYA--QLPDTLKKDTLLVLICPTEKKST------K 10837 + D+ +LY R SRKNL I A+ L + K L++ P T Sbjct: 201 MFDDSVIWLYNNRNISRKNLMDTIYAFLVYMLKNYRKHHLLIIKSDPVVPVGTDIPAFLA 260 Query: 10838 ELQKKIAGAGLEKNVLHLVHVPDNDLVH-----------LYNAALALLFVSFSEGFGLPL 10984 ++ ++ H+V + ++++ H LYN A +L +S +EGFG+ Sbjct: 261 DINSFFHYRDIDLRE-HIVFISNDEVFHNGGFSREEIALLYNGADVVLQLSSNEGFGIAS 319 Query: 10985 VEAMNCGCPAI 11017 +EA CG P + Sbjct: 320 LEASLCGAPVV 330 >ref|NP_445711.1|mannosyltransferase-related protein Length = 309 Score = 38.1 bits (87), Expect = 0.034 Identities = 40/171 (23%), Positives = 68/171 (39%) Frame = +3 Query: 11811 HYFPKYADKYVATPLAANPAFRQISTNRNFLLQYGIADPLKPYLLYVGEIQPRKNIEGLL 11990 HY K + + P F Q++ + ++ K YL V +P Sbjct: 92 HYVKKLLNGTIHVDGVLRPPFNQVAYDER------ASNVKKEYLFTVLASEPGDGT---- 141 Query: 11991 RAFEALPSALQHELQIIIVGHAKRKENLTLFHDAINDMKSRAPVYHLRNVPLVDLVKLYN 12170 A+ +++ L I+ N TL + D R+ R + +L + Sbjct: 142 ----AIRKRVKYTLDIL---RQLNMRNSTLVISNVGDFDMRSYTLDER-----EKYRLLH 189 Query: 12171 AAHAFVYLSFYEGFGLPIIEAMSCGCPVLTSKTTSLGEVAADAALTIDPRD 12323 ++ ++ LS EGFGLP++E+MS G P + + E A + IDP D Sbjct: 190 KSYFYLSLSKNEGFGLPLMESMSVGTPAVYVNAFAFKEYA--VGIPIDPYD 238 Score = 38.1 bits (87), Expect = 0.034 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 22/158 (13%) Frame = +2 Query: 10754 LAYAQLPDTLKKDTLLVLICPTE------KKSTKELQKKIAGAGLEKNVLHLVHVPDNDL 10915 +AY + +KK+ L ++ +K K + + + L + +V D D+ Sbjct: 115 VAYDERASNVKKEYLFTVLASEPGDGTAIRKRVKYTLDILRQLNMRNSTLVISNVGDFDM 174 Query: 10916 ----------VHLYNAALALLFVSFSEGFGLPLVEAMNCGCPAIIANXXXXXXXXXXXXX 11065 L + + L +S +EGFGLPL+E+M+ G PA+ N Sbjct: 175 RSYTLDEREKYRLLHKSYFYLSLSKNEGFGLPLMESMSVGTPAVYVN--AFAFKEYAVGI 232 Query: 11066 XVDPYDT----ESIRQAMLAISEDSLLRNDL--SKKCI 11161 +DPYD S + + DS +RN L +++CI Sbjct: 233 PIDPYDVIIEETSYGKMDNYLIRDSDVRNALQEARECI 270 >ref|NP_445726.1|first mannosyl transferase-related protein Length = 267 Score = 37.0 bits (84), Expect = 0.076 Identities = 28/95 (29%), Positives = 44/95 (46%) Frame = +2 Query: 10919 HLYNAALALLFVSFSEGFGLPLVEAMNCGCPAIIANXXXXXXXXXXXXXXVDPYDTESIR 11098 +L + AL + VS +EGF +P VEAM+ G P I ++ E +R Sbjct: 175 YLLSHALFYIAVSDAEGFSIPPVEAMSVGTPLIYIK----KHTYKEYGCGIEMDSIEDLR 230 Query: 11099 QAMLAISEDSLLRNDLSKKCIVRAQRFSWQTTAQE 11203 + ++ E DLS KC ++ R+ + T QE Sbjct: 231 KIEISKEE----WEDLSYKCWYKSLRYHYITVGQE 261 Score = 35.0 bits (79), Expect = 0.29 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 2/103 (1%) Frame = +3 Query: 11964 PRKNIEGLLRAFEALPSALQHELQIIIVGHAKRKENLTLFHDAINDMKSRAPVYHLRNVP 12143 P K I+ L+ FE KRKE LTL D N Sbjct: 134 PYKRIDNTLKMFEG-----------------KRKE-LTLISDHSNA--------DFDFFS 167 Query: 12144 LVDLVKLYNAAHAFVYL--SFYEGFGLPIIEAMSCGCPVLTSK 12266 L + VK Y +HA Y+ S EGF +P +EAMS G P++ K Sbjct: 168 LSEDVKYYLLSHALFYIAVSDAEGFSIPPVEAMSVGTPLIYIK 210 >ref|NP_058468.1|orf 30 Length = 204 Score = 35.4 bits (80), Expect = 0.22 Identities = 28/137 (20%), Positives = 58/137 (42%), Gaps = 4/137 (2%) Frame = -2 Query: 18140 VYNDVENVNASISSTLVNFLQNPFSIFVYMVVLFALSWQLTLFAAFTSLLIFFLIQLVGK 17961 ++N+V+ N ++ L N +F++++ +F F L++ F+I L+ Sbjct: 57 IFNNVDLKNLNLIQLLTGLKANILFLFIFVLTVF----------VFNPLIVKFIIWLINI 106 Query: 17960 NVKGLALTFQTRMGDMNSVLQEK----FNGIKVIKATAFEDVELERFKEFTRDFRTLGIK 17793 K + L + + + + F IK + E+ EL+ + DF LG++ Sbjct: 107 TRKFMKLDCISLLDKRDKLFNNNGKPVFIVIKDFENRIIEEGELKTYNSAGSDFDLLGVE 166 Query: 17792 IQQMRNVISPLNETLLV 17742 Q + P N+ L + Sbjct: 167 RQDFKVSDLPSNDELYI 183 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,129,163 Number of Sequences: 14420 Number of extensions: 2094591 Number of successful extensions: 5857 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 4211 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5854 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 9211568447 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig42 (17,676 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_536413.1|putative DNA cytosine methylase 168 2e-41 ref|NP_666000.1|putative N4-cytosine methyltransferase 154 2e-37 ref|YP_006632.1|putative DNA adenine methylase 59 2e-08 ref|NP_599080.1|unknown 55 2e-07 ref|NP_892105.1|DNA adenine-methylase 55 2e-07 ref|NP_543076.1|putative DNA methylase 54 4e-07 ref|YP_077259.1|Cytosine methylase, similar to N4-cytosine methy... 51 5e-06 ref|NP_758910.1|ORF17 49 2e-05 ref|NP_945276.1|transferase 47 5e-05 ref|NP_666012.1|adenine methyltransferase 43 0.001 ref|NP_958699.1|adenine DNA methyltransferase 39 0.014 ref|NP_817550.1|gp101 39 0.024 ref|NP_958114.1|gp10 38 0.041 ref|NP_817549.1|gp100 37 0.069 ref|NP_705636.1|gp10 37 0.069 ref|NP_108695.1|putative methylase 37 0.069 ref|NP_818050.1|gp77 37 0.091 ref|NP_050163.1|hypothetical protein 35 0.20 ref|NP_818049.1|gp76 35 0.26 ref|NP_818455.1|gp155 34 0.45 >ref|NP_536413.1|putative DNA cytosine methylase Length = 378 Score = 168 bits (426), Expect = 2e-41 Identities = 88/191 (46%), Positives = 116/191 (60%), Gaps = 15/191 (7%) Frame = +1 Query: 16720 GDTRDIIKSLPDNTFRC--VVTSPPYWGVRDY------GVENQIGAEPDLQDYIKALVEI 16875 GD RD+++++ + R +VTSPPYWG+R Y +IG EP L+++I LV + Sbjct: 10 GDCRDLMRAMAADGVRVQTIVTSPPYWGLRSYLPDGHPDKHREIGQEPTLREFINTLVGV 69 Query: 16876 FSEVRRVLQPDGTFWLNIGNTYTSGGRKWRQEDSKNKGRA-------MSYRPPTPDGLKK 17034 F R +L DGT WLN+G+ Y S G + GRA +S R DGLK Sbjct: 70 FDLARALLADDGTLWLNMGDAYASSGGQTPMRGETFAGRARAKENICLSNRKAGIDGLKV 129 Query: 17035 KDLIGVAWMVAMACQLDGWYLRNDIIWHKPNCQPESVKDRLTVAHEYLFMFSKSEQYYFN 17214 KDL+G W +A A Q GWYLR DIIWHKPN PESV+DR T AHEYLF+ SKSE+YY++ Sbjct: 130 KDLMGQPWRLAFALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHEYLFLLSKSERYYYD 189 Query: 17215 QEAIKESYTNG 17247 A++E + G Sbjct: 190 FHAMQEPVSGG 200 Score = 92.8 bits (229), Expect = 1e-18 Identities = 41/84 (48%), Positives = 59/84 (70%) Frame = +1 Query: 17218 EAIKESYTNGNGFKNKRTVWSINTESCAEAHFAVFPKNLVRPCILAGSEERDLILDPFYG 17397 E+ + T+ +N+R+VW+I T+S AHFA FP+ LV PC+LAGS D++ DPF+G Sbjct: 277 ESFSAAVTDVVTSRNRRSVWTIPTQSFDGAHFATFPEALVEPCVLAGSRPGDVVFDPFFG 336 Query: 17398 AGTVGIVSQELNRKCVGIEINPDY 17469 +GT G V+Q L R+ +G E+NPDY Sbjct: 337 SGTTGQVAQRLGRRFIGCELNPDY 360 >ref|NP_666000.1|putative N4-cytosine methyltransferase Length = 448 Score = 154 bits (390), Expect = 2e-37 Identities = 86/255 (33%), Positives = 135/255 (52%), Gaps = 38/255 (14%) Frame = +1 Query: 16720 GDTRDIIKSLPDNTFRCVVTSPPYWGVRDYGVENQIGAEPDLQDYIKALVEIFSEVRRVL 16899 GD +++ LP+++ CVVTSPPY+G RDYGV+ QIG E L ++I++LV++ SE+RRVL Sbjct: 12 GDAEEVLAELPESSVHCVVTSPPYFGHRDYGVDGQIGLEDSLDEFIESLVDVASEIRRVL 71 Query: 16900 QPDGTFWLNIGNTYT---SGGRKWRQEDSKNKGRAM----SYRPP-TPDGLKKKDLIGVA 17055 + DG++WLN+G+++ G +W Q + + R +Y P +++K + V Sbjct: 72 RDDGSWWLNLGDSFAGSGGAGGQWGQNEHGSATRLADAGDAYNGPLNTSNIRRKSKMLVP 131 Query: 17056 WMVAMACQLDGWYLRNDIIWHKPNCQPESVKDRLTVAHEYLFMFSKSEQYYFNQEAIKES 17235 VA+A + GW +R D +W KPN P S DRL E++F Y+FN +AI+E Sbjct: 132 HRVAIALENAGWIIRADAVWTKPNGMPSSAHDRLNEKKEFVFHLVPEPHYWFNLDAIREP 191 Query: 17236 YTNG------------------------------NGFKNKRTVWSINTESCAEAHFAVFP 17325 ++ NG KN ++ IN ++AHFAVFP Sbjct: 192 HSEASLERAGRHDQAKRGYPSNDHSLEPSRFCHPNG-KNPGDIFEINAAQFSDAHFAVFP 250 Query: 17326 KNLVRPCILAGSEER 17370 + L + I + E+ Sbjct: 251 EELCKDPIKSSCPEK 265 Score = 43.5 bits (101), Expect = 7e-04 Identities = 15/39 (38%), Positives = 30/39 (76%) Frame = +1 Query: 17374 LILDPFYGAGTVGIVSQELNRKCVGIEINPDYVYISSRR 17490 ++LDPF GAGT +V++ R+ +G+++NP++V ++ +R Sbjct: 381 IVLDPFAGAGTTCLVAKRFGRRFIGVDLNPEFVAMAQQR 419 >ref|YP_006632.1|putative DNA adenine methylase Length = 353 Score = 58.5 bits (140), Expect = 2e-08 Identities = 29/80 (36%), Positives = 49/80 (61%) Frame = +1 Query: 16708 QVINGDTRDIIKSLPDNTFRCVVTSPPYWGVRDYGVENQIGAEPDLQDYIKALVEIFSEV 16887 Q+++ D+ + IK+LPDN+ ++T PPY+ V+ +NQ P + DY+ L E F+E Sbjct: 11 QLVHADSLEFIKTLPDNSIDAIITDPPYYRVKANAWDNQ---WPSVTDYLAWLDEFFAEF 67 Query: 16888 RRVLQPDGTFWLNIGNTYTS 16947 RVL+P G+ ++ G +S Sbjct: 68 WRVLKPAGSLYVFCGPKLSS 87 >ref|NP_599080.1|unknown Length = 350 Score = 55.1 bits (131), Expect = 2e-07 Identities = 29/83 (34%), Positives = 48/83 (57%) Frame = +1 Query: 16699 DGIQVINGDTRDIIKSLPDNTFRCVVTSPPYWGVRDYGVENQIGAEPDLQDYIKALVEIF 16878 + + +IN D I+SLPD++ +VT PPY+ V+ G +NQ + +DY+K L Sbjct: 8 NSVDLINADCLHFIQSLPDDSIDLIVTDPPYFKVKPNGWDNQWKGD---EDYLKWLDHCL 64 Query: 16879 SEVRRVLQPDGTFWLNIGNTYTS 16947 ++ RVL+P G+ +L G+ S Sbjct: 65 AQFWRVLKPAGSLYLFCGHRLAS 87 >ref|NP_892105.1|DNA adenine-methylase Length = 357 Score = 55.1 bits (131), Expect = 2e-07 Identities = 27/74 (36%), Positives = 45/74 (60%) Frame = +1 Query: 16711 VINGDTRDIIKSLPDNTFRCVVTSPPYWGVRDYGVENQIGAEPDLQDYIKALVEIFSEVR 16890 +++ D+ IK+LPDN ++T PPY+ V+ +NQ + P D++ L E F+E Sbjct: 12 LVHADSLQYIKTLPDNYIDAIITDPPYYRVKSNSWDNQWASVP---DFLAWLDEFFAEFW 68 Query: 16891 RVLQPDGTFWLNIG 16932 RVL+P+G+ +L G Sbjct: 69 RVLKPNGSLYLFCG 82 >ref|NP_543076.1|putative DNA methylase Length = 352 Score = 54.3 bits (129), Expect = 4e-07 Identities = 28/80 (35%), Positives = 48/80 (60%) Frame = +1 Query: 16708 QVINGDTRDIIKSLPDNTFRCVVTSPPYWGVRDYGVENQIGAEPDLQDYIKALVEIFSEV 16887 ++IN D + I++LP+N+ +VT PPY+ V+ G +NQ + DY+K L + ++ Sbjct: 11 ELINADCLEFIQTLPENSVDLIVTDPPYFKVKPEGWDNQWKGD---DDYLKWLDQCLAQF 67 Query: 16888 RRVLQPDGTFWLNIGNTYTS 16947 RVL+P G+ +L G+ S Sbjct: 68 WRVLKPAGSLYLFCGHRLAS 87 >ref|YP_077259.1|Cytosine methylase, similar to N4-cytosine methylase Length = 297 Score = 50.8 bits (120), Expect = 5e-06 Identities = 68/289 (23%), Positives = 115/289 (39%), Gaps = 26/289 (8%) Frame = +1 Query: 16702 GIQVINGDTRDIIKSLPDNTFRCVVTSPPYWGVR-DYGVENQIGAEPDL----QDYIKAL 16866 G ++ GD+R++ K + D + VVTSPPY+ DY PDL +++ + Sbjct: 4 GNLIVFGDSRNM-KEISDGSVHLVVTSPPYFNAPFDY---------PDLFKDYDEFLGLI 53 Query: 16867 VEIFSEVRRVLQPDGTFWLNIGNTYTSGGRKWRQEDSKNKGRAMSYRPPTPDGLKKKDLI 17046 ++ E+ RVL +G + G+ + P T D L+ Sbjct: 54 RDVARELYRVLA-EGRIACFVTQDVRINGKLY---------------PVTADILR----- 92 Query: 17047 GVAWMVAMACQLDGWYLRNDIIWHKPNCQPE-SVKDRLTVAHEY-------------LFM 17184 +G+ R+ IIW KP S + + + H Y L M Sbjct: 93 --------IMMEEGFTYRDRIIWKKPEGYVRISRRSGVQLQHPYPMYFYPDNIYEEILIM 144 Query: 17185 FSKSEQYYFNQEAIKESYTNGNGFKNKR---TVWSINT----ESCAEAHFAVFPKNLVRP 17343 +Y N+ ++ S + F ++ +VW I + E A FP+ + Sbjct: 145 QKGEYKYPKNKAELESSRIDIQEFNREKWYLSVWEITNVLPVKGRIEEGIAAFPEEIPYR 204 Query: 17344 CILAGSEERDLILDPFYGAGTVGIVSQELNRKCVGIEINPDYVYISSRR 17490 I S + +LDPF G+ T V+ EL RK VG EI+ + + + ++ Sbjct: 205 LIKLFSYVGETVLDPFMGSATTLKVAVELRRKAVGYEIDLELLDVVKKK 253 >ref|NP_758910.1|ORF17 Length = 359 Score = 48.9 bits (115), Expect = 2e-05 Identities = 24/73 (32%), Positives = 42/73 (57%) Frame = +1 Query: 16705 IQVINGDTRDIIKSLPDNTFRCVVTSPPYWGVRDYGVENQIGAEPDLQDYIKALVEIFSE 16884 I V N D ++K+LPDN+ + T PPY+ V+ +NQ D +++ L +I + Sbjct: 12 ITVFNADCSQLLKTLPDNSVDLIATDPPYFRVKQDAXDNQ---WDDETEFLAWLDDILFD 68 Query: 16885 VRRVLQPDGTFWL 16923 + R+L+P G+ +L Sbjct: 69 LWRILKPSGSLYL 81 >ref|NP_945276.1|transferase Length = 421 Score = 47.4 bits (111), Expect = 5e-05 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 19/154 (12%) Frame = +1 Query: 17086 GWYLRNDIIWHKPNCQPESVKDRLTVAHEYLFMFSKSEQYYF------------NQEAIK 17229 GW L+ IIW K N +D L+ + +YF ++E +K Sbjct: 256 GWLLKQSIIWVK-NAIVLGRQDYQWKHEPCLYGWKDGASHYFVDNRSLATVIEEDEENLK 314 Query: 17230 E-------SYTNGNGFKNKRTVWSINTESCAEAHFAVFPKNLVRPCILAGSEERDLILDP 17388 E SY + TV+ + + H + P L+ C+L S++ D ILD Sbjct: 315 EMTKSELISYIKTMQDTSPTTVFYEDKPVRNDIHPTMKPLKLIARCVLNSSKKGDKILDS 374 Query: 17389 FYGAGTVGIVSQELNRKCVGIEINPDYVYISSRR 17490 F G G+ +V + R C +E++P YV + +R Sbjct: 375 FNGGGSTLMVCERSERVCYAMELDPVYVERTIKR 408 >ref|NP_666012.1|adenine methyltransferase Length = 419 Score = 42.7 bits (99), Expect = 0.001 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Frame = +1 Query: 17323 PKNLVRPCILAGSEERDLILDPFYGAGTVGIVSQELNRKCVGIEINPD-YVYISSRR 17490 P L+ I S+ D++LDPF G+G+ + S + +R+C+G E+ D Y + RR Sbjct: 338 PVGLLEEFIEQSSQPGDVVLDPFAGSGSTAVASVQTDRECIGFELEGDVYQEVVDRR 394 >ref|NP_958699.1|adenine DNA methyltransferase Length = 251 Score = 39.3 bits (90), Expect = 0.014 Identities = 22/60 (36%), Positives = 32/60 (53%) Frame = +1 Query: 17326 KNLVRPCILAGSEERDLILDPFYGAGTVGIVSQELNRKCVGIEINPDYVYISSRRNARVQ 17505 + LVRP + G ++LDPF G+GT G+ + R+ +GIE Y IS R A + Sbjct: 187 RELVRPVMPGG-----VVLDPFAGSGTTGVAAVLSGRRFIGIERETAYAEISRTRLAAAE 241 >ref|NP_817550.1|gp101 Length = 231 Score = 38.5 bits (88), Expect = 0.024 Identities = 22/73 (30%), Positives = 35/73 (47%) Frame = +1 Query: 17281 INTESCAEAHFAVFPKNLVRPCILAGSEERDLILDPFYGAGTVGIVSQELNRKCVGIEIN 17460 +N + AH V P L+R + + ++LDPF G+GT +C+ IE Sbjct: 155 VNEDGNKVAHSTVKPLALMRWLVKLVTPPGGVVLDPFAGSGTTVEACLLEKFRCIAIENE 214 Query: 17461 PDYVYISSRRNAR 17499 PDY+ + +R R Sbjct: 215 PDYIPLIEQRLER 227 >ref|NP_958114.1|gp10 Length = 262 Score = 37.7 bits (86), Expect = 0.041 Identities = 58/265 (21%), Positives = 100/265 (37%), Gaps = 8/265 (3%) Frame = +1 Query: 16720 GDTRDIIKSLPDNTFRCVVTSPPYWGVRDYGVENQIGAEPDLQDYIKALVEIFSEVRRVL 16899 GD D+++ LPD + V+ PY G D + ++++ RR++ Sbjct: 14 GDCLDLMRLLPDASVDMVMCDLPY------------GTTACAWDSVLPFDALWAQYRRIV 61 Query: 16900 QPDGTFWLNIGNTYTSG----GRKWRQED---SKNKGRAMSYRPPTPDGLKKKDLIGVAW 17058 + G L +TS +W + D +KN+ ++ P + L+ Sbjct: 62 KSRGAVVLTAAQPFTSALVASNFEWFKYDWVWAKNRPTNFAHAKNKPMPKHESVLVFSPG 121 Query: 17059 MVAMACQLDGWYLRNDIIWHKPNCQPESVKDRLTVAHEYLFMFSKSEQY-YFNQEAIKES 17235 A Q N +P +K T A MFSK + + QE Sbjct: 122 TTVHASQFKLRMTYNP--QGLTRIEPRKMKTYNTDA-----MFSKRGSHGEYTQE----- 169 Query: 17236 YTNGNGFKNKRTVWSINTESCAEAHFAVFPKNLVRPCILAGSEERDLILDPFYGAGTVGI 17415 +TN ++ +T+ H P L+ I + E D +LD G+GT G+ Sbjct: 170 FTN-----YPHSLLEFSTDQL-NLHPTAKPVALMEYLIRTYTSEGDTVLDNCMGSGTTGV 223 Query: 17416 VSQELNRKCVGIEINPDYVYISSRR 17490 R+ +G+E + DY I++ R Sbjct: 224 ACINTGRRFIGMEKDADYALIATGR 248 >ref|NP_817549.1|gp100 Length = 187 Score = 37.0 bits (84), Expect = 0.069 Identities = 27/86 (31%), Positives = 43/86 (50%) Frame = +1 Query: 16654 ASASHLLINRDQLDEDGIQVINGDTRDIIKSLPDNTFRCVVTSPPYWGVRDYGVENQIGA 16833 A H ++ +Q+ E + + GD RDI+ L D + +VT PPY + G +G Sbjct: 3 AGRIHTTLHEEQMTEHPVLIHLGDCRDILAELEDASVDSIVTDPPY----ELGF---MGK 55 Query: 16834 EPDLQDYIKALVEIFSEVRRVLQPDG 16911 + D I VE++ + RVL+P G Sbjct: 56 KWD-GSGIAFDVEMWEQCLRVLKPGG 80 >ref|NP_705636.1|gp10 Length = 262 Score = 37.0 bits (84), Expect = 0.069 Identities = 58/265 (21%), Positives = 100/265 (37%), Gaps = 8/265 (3%) Frame = +1 Query: 16720 GDTRDIIKSLPDNTFRCVVTSPPYWGVRDYGVENQIGAEPDLQDYIKALVEIFSEVRRVL 16899 GD D+++ LPD + V+ PY G D + ++++ RR++ Sbjct: 14 GDCLDLMRLLPDASVDMVMCDLPY------------GTTACAWDSVLPFDALWAQYRRIV 61 Query: 16900 QPDGTFWLNIGNTYTSG----GRKWRQED---SKNKGRAMSYRPPTPDGLKKKDLIGVAW 17058 + G L +TS +W + D +KN+ ++ P + L+ Sbjct: 62 KSRGAVVLTAAQPFTSALVASNFEWFKYDWVWAKNRPTNFAHAKNKPMPKHESVLVFSPG 121 Query: 17059 MVAMACQLDGWYLRNDIIWHKPNCQPESVKDRLTVAHEYLFMFSKSEQY-YFNQEAIKES 17235 A Q N +P +K T A MFSK + + QE Sbjct: 122 TTVHASQSKLRMTYNP--QGLTRIEPRKMKTYNTDA-----MFSKRGSHGEYTQE----- 169 Query: 17236 YTNGNGFKNKRTVWSINTESCAEAHFAVFPKNLVRPCILAGSEERDLILDPFYGAGTVGI 17415 +TN ++ +T+ H P L+ I + E D +LD G+GT G+ Sbjct: 170 FTN-----YPHSLLEFSTDQL-NLHPTAKPVALMEYLIRTYTSEGDTVLDNCMGSGTTGV 223 Query: 17416 VSQELNRKCVGIEINPDYVYISSRR 17490 R+ +G+E + DY I++ R Sbjct: 224 ACINTGRRFIGMEKDADYALIATGR 248 >ref|NP_108695.1|putative methylase Length = 252 Score = 37.0 bits (84), Expect = 0.069 Identities = 18/72 (25%), Positives = 37/72 (51%) Frame = +1 Query: 17275 WSINTESCAEAHFAVFPKNLVRPCILAGSEERDLILDPFYGAGTVGIVSQELNRKCVGIE 17454 W + ++ + H P+++++ I +++ D I+DP G+G+ S EL R G E Sbjct: 169 WGRDNKTIPKIHPTQKPQSVLKRLIEIFTDKGDTIIDPCMGSGSTIRASIELGRNAYGFE 228 Query: 17455 INPDYVYISSRR 17490 I D+ ++ + Sbjct: 229 IKKDFYNLAKEK 240 >ref|NP_818050.1|gp77 Length = 217 Score = 36.6 bits (83), Expect = 0.091 Identities = 38/156 (24%), Positives = 63/156 (40%) Frame = +1 Query: 17023 GLKKKDLIGVAWMVAMACQLDGWYLRNDIIWHKPNCQPESVKDRLTVAHEYLFMFSKSEQ 17202 G++K + W VA + R +IW K P LT A F S E Sbjct: 67 GVEKPAAVFGTWRVAKPANV-----RQVLIWDKRGAGPGM--GDLTTA----FGTSHEEI 115 Query: 17203 YYFNQEAIKESYTNGNGFKNKRTVWSINTESCAEAHFAVFPKNLVRPCILAGSEERDLIL 17382 Y A K S G+ + + + + H P L+ I A + ++ Sbjct: 116 YLIGHWA-KRSTRRGSVITTESSPSDLTSRI---GHPTPKPIGLMETIIAAAPD--GVVA 169 Query: 17383 DPFYGAGTVGIVSQELNRKCVGIEINPDYVYISSRR 17490 DPF G+G+ + ++ L RK +G+E+ Y + ++R Sbjct: 170 DPFAGSGSTLVAARNLGRKAIGVELEEKYCELIAKR 205 >ref|NP_050163.1|hypothetical protein Length = 731 Score = 35.4 bits (80), Expect = 0.20 Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 22/180 (12%) Frame = -2 Query: 4184 AGPVIGSVGLIPA-TSP---QINGGYATTAPSYYLHVDEAAFGGTLTI-IGNRTTMQSLW 4020 AGP G +P TSP +G Y + SY ++ GT+ +GNR T W Sbjct: 147 AGP-----GKVPLYTSPFGGHKSGQYLSNGQSYKIYWKAKDIDGTVWYNLGNRDTQ---W 198 Query: 4019 AAGARKYRILHRAG---SSGAFTPLLQSWNNYRWNGATSTLESIAWDSLQMYPLPDPTKD 3849 + KY +L + G + A+ L + N +G T I+W++ YP+ D + D Sbjct: 199 ISS--KYFVLSKTGDYATQKAYGRLSINGNVTVMSGPGGTGNVISWNNKGQYPIYDISTD 256 Query: 3848 YSIDDLLIQWNTIGSTGIHEL--------------KAEFFRDDPARTPVASAPQTLQLMI 3711 Y +W IG H+L E+ DD A+ A+ QT Q+ + Sbjct: 257 YE----GTKWYHIGQQNGHQLWVKSGDNVSFKEPGTVEYKEDDAAK---ANIKQTAQVPV 309 >ref|NP_818049.1|gp76 Length = 224 Score = 35.0 bits (79), Expect = 0.26 Identities = 13/39 (33%), Positives = 25/39 (64%) Frame = +1 Query: 17374 LILDPFYGAGTVGIVSQELNRKCVGIEINPDYVYISSRR 17490 ++ DPF G+G+ + ++ L R+ +G+E+ Y I +RR Sbjct: 174 VVADPFAGSGSTLVAARNLGRRAIGVELEERYCEIIARR 212 >ref|NP_818455.1|gp155 Length = 436 Score = 34.3 bits (77), Expect = 0.45 Identities = 22/74 (29%), Positives = 31/74 (41%) Frame = +1 Query: 17281 INTESCAEAHFAVFPKNLVRPCILAGSEERDLILDPFYGAGTVGIVSQELNRKCVGIEIN 17460 +N + H V P L+R +ILDPF G+GT C+ IE Sbjct: 361 VNEDGAKVMHSTVKPLTLMRWLARLVCPPGGVILDPFAGSGTTVEACLLEGFDCIAIESE 420 Query: 17461 PDYVYISSRRNARV 17502 DY+ + +R RV Sbjct: 421 ADYIPLIEQRIERV 434 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,300,759 Number of Sequences: 14420 Number of extensions: 1905316 Number of successful extensions: 4898 Number of sequences better than 0.5: 20 Number of HSP's better than 0.5 without gapping: 3594 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4863 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 8370491542 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig43 (18,267 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_006944.1|NAD-dependent DNA ligase, subunit A 103 5e-22 ref|NP_046572.1|ABC transporter 77 8e-14 ref|YP_006945.1|NAD-dependent DNA ligase, subunit B 44 8e-04 >ref|YP_006944.1|NAD-dependent DNA ligase, subunit A Length = 323 Score = 103 bits (258), Expect = 5e-22 Identities = 108/382 (28%), Positives = 165/382 (43%), Gaps = 5/382 (1%) Frame = -2 Query: 11099 YVDARPEISDYEFDRLMERLIELEKAFPDFVTPDSPSHRVGGAITREFPSVRHREPMLSL 10920 Y ISD E+DRL++R E+ P P L Sbjct: 15 YYQGMSLISDEEYDRLVKRFPLEEEIGPKGDIPH-------------------------L 49 Query: 10919 SNTYSLAEVEDFYSRVKKLLLVE-GVREQDMAAELKFDGVAISLLYRDGLLVQGATRGDG 10743 YSL +V +Y+R K G E D K DG AISLLY +G VQ TRG+G Sbjct: 50 YRMYSLQKV--YYNRGDKPPFNPLGQVETD-----KLDGCAISLLYINGEFVQALTRGNG 102 Query: 10742 TEGDDITTNLKTLSSVPLRIPLTSLPVXXXXXXXXXXXXEVFMQKDDFARLNEARPEEDR 10563 G+D+T+N++ L+ +P EV + K+ Sbjct: 103 ILGNDVTSNVRLLN----------IPKKISQKVPTQITGEVLITKE-------------- 138 Query: 10562 FANPRNATAGTLKLQDSGEVARR----RLNFVAYYLRLSSQDSFLLTQYDRLELLGQLGF 10395 N RN +G + L+DS + +R L FVAY ++ S++ + Y L + + Sbjct: 139 VENKRNFASGAINLKDSDDFVQRIGEGGLIFVAYGIQCSAESVGITEAY-----LKDMLW 193 Query: 10394 FTGKHYRLCRDMKEIGDFIGYWAVERWNLPYETDGVVLKLNDVALWPRIGATAKSPRWAI 10215 +++ +++ +I TDG V+++ND + R G T K PR A Sbjct: 194 LENENFLTVVNVRSFFKWI------------PTDGKVVRINDNNKFFREGWTNKFPRGAF 241 Query: 10214 AYKYPAQQAKTVLQGVAFQVGRLGTVTPVAELEPVRLAGSTVSRSTLHNFDEIERLGLML 10035 A K + T L V +QVG G VTPV EPV + +T+ ++TL+N D I L L + Sbjct: 242 AIKEDEEGEITTLTKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNNVDYINSLDLEI 301 Query: 10034 HDRVIIEKSGEVIPKVIRVVLD 9969 ++ + ++G VIP ++ V D Sbjct: 302 GCQIRVIRAGGVIPCIVERVYD 323 >ref|NP_046572.1|ABC transporter Length = 705 Score = 76.6 bits (187), Expect = 8e-14 Identities = 59/201 (29%), Positives = 109/201 (54%), Gaps = 7/201 (3%) Frame = -2 Query: 13484 LALSRDVRQTIIPDLSLEIEAGEFVAITGPSGSGKSTLLYMMGGLDKPTFGNVWLDGEEL 13305 L + D + I+ D++L ++ + V I G SG+GKST + L K +++L+G ++ Sbjct: 488 LNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDI 547 Query: 13304 TEKDESEMNRIRNEKIGFIYQFHFLLPEFTALENVSMPMMINGRFNKKEIKDRAKMLLD- 13128 D + + +I +I + FL + T EN+ M + F++ EI++ M Sbjct: 548 NRYDHLSIRK----RIVYIDENPFLF-KGTIKENLCMGEI----FDQNEIENACIMSQCH 598 Query: 13127 --TVGLENKYTNKPSQ----LSGGQQQRVAIARALANEPKVLLGDEPTGNLDSKSAKNVY 12966 L+ +Y+ K S+ LS GQ+QR+A+ARA+ ++P+VL+ DE N+D + K +Y Sbjct: 599 EFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIY 658 Query: 12965 ELFDRLNQEKNQTIVVVTHDE 12903 E R+ + I+++TH++ Sbjct: 659 ETLHRM----DCLIILITHND 675 Score = 51.6 bits (122), Expect = 3e-06 Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 6/178 (3%) Frame = +1 Query: 2014 NITIDIPNNSSTGIVGANGAGKSTLVNHFNGYFLPQTGSISIEKDVINKKNLDVIRKKVG 2193 +I + + I+G +G GKST + + SI + IN+ + IRK++ Sbjct: 501 DINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIV 560 Query: 2194 LVFQNPDDQLFTARLYDDIAFGPENLGMPPTEIARVVEASLRDI-NL-----WELRDKPP 2355 + +NP LF + +++ G E E A ++ I NL ++L + Sbjct: 561 YIDENPF--LFKGTIKENLCMG-EIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG- 616 Query: 2356 SHLSQGQKRFAAFAAVLVMNPTILVMDEPTSDLDPGNRRKLITLVNSLVKTKITVSHD 2529 S+LS GQK+ A A ++ P +L++DE S++DP N + + ++ + I ++H+ Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCLIILITHN 674 >ref|YP_006945.1|NAD-dependent DNA ligase, subunit B Length = 259 Score = 43.5 bits (101), Expect = 8e-04 Identities = 33/147 (22%), Positives = 74/147 (50%), Gaps = 5/147 (3%) Frame = -2 Query: 9944 VGVPSVCPECGASLEKPENEVSYYCPDQDSCPAQIRGRLLHFASRNALDIQSLGESLVAQ 9765 + +P+ CP CG+ L+ ++ +C ++ +CPAQ + +F ++ + ++ G + + Sbjct: 3 IEIPTQCPSCGSKLDLVNGQL--FCRNKSNCPAQSSKLIENFCTK--MKLKGFGPKTIEK 58 Query: 9764 LVQKGLVRDAGDLYLLQQPQLEALERMGRKSAHNLLRALQES--REKSYERLLYALGIRH 9591 L + +L+ L + L + +G K A L+ L + + +L +LGI Sbjct: 59 LE----LTKISELFYLTEEDL--VRAVGSKVAAKLISELNTKVRGDIDFGSVLGSLGIPL 112 Query: 9590 VGQATARELAR---AYETVEALQNASE 9519 +G+ A++L++ +++ V+A A E Sbjct: 113 IGEVAAKKLSQNCTSFQDVKADGKAGE 139 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,765,726 Number of Sequences: 14420 Number of extensions: 2020214 Number of successful extensions: 5637 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 3990 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5631 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 8568034258 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig44 (25,624 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 160 6e-39 ref|NP_958266.1|hypothetical protein 47 9e-05 ref|NP_818503.1|gp203 37 0.098 ref|NP_892052.1|hypothetical protein 36 0.17 >ref|NP_046572.1|ABC transporter Length = 705 Score = 160 bits (405), Expect = 6e-39 Identities = 147/579 (25%), Positives = 270/579 (46%), Gaps = 14/579 (2%) Frame = +3 Query: 7560 QKDETLEKGKKGSADWYIASRLIAYIKPYKALVAASAGITLAGSILGPLRPYLTKIAIDD 7739 +K++ +K D ++LI ++ +L G+ +AGS + K +D Sbjct: 145 EKEKDQKKHSYFFKDILFRNKLIVFVILLTSLFVV--GLAVAGS-------FYIKFLVDL 195 Query: 7740 YIAHGDMKGLATISLLLAAVVLLDGIKQFIATWLTQIIGQKAVFSIRMDVFRHLQQLPAR 7919 I + L TI+L+ ++VL+ I F+ ++L + K + F + +LP Sbjct: 196 IIPRSLRESLITITLIFISMVLIRCIFDFVRSYLIIKLSYKVDKEMSNVYFNKVTKLPIN 255 Query: 7920 FFDRNPIGRLLTRTTNDIESLNEMLSSGIITILGDIMQLLFIVGLMLWIDWQLALVVLAI 8099 FF+ G +++R ND + + S+ +T + DI+ +L + G++L+ + + + I Sbjct: 256 FFENREDGEVISRF-NDGIYIKDFFSANFVTAIIDIILILGL-GVILYRTNNILFLTI-I 312 Query: 8100 LPLMLYATM--MFKKRVRIAFQDVRTHLARLNTFLQEHIAGMTIVQLFNH-----QKSEY 8258 LP++L + + +F ++ Q + A+ + L + MT V N +K Sbjct: 313 LPILLLSCLAILFFDHLKKKNQKLMEDKAKSTSLLINFLKNMTTVYSLNKTSFFLEKFHL 372 Query: 8259 TKHSDINADHRDANIRTVFYFSVYYPFI--EVLSSLTAG----MVIWYSAVRVLNADLTL 8420 T +N+ FSV I E+L L +++W +VLN ++L Sbjct: 373 TYDKQLNST-----------FSVAKAVISNEILKGLIQNSFTIIILWVGTRQVLNDSMSL 421 Query: 8421 GVVVSFVQYIWLFFRPLQHLSDRFNVIQTAIASSDRVFRLLXXXXXXXXXXXXXXXFVFR 8600 G ++ L + + +Q A +S R F ++ F Sbjct: 422 GTLLFINTLAAFLLSSLDRILSMQSDLQQAHVASIRFFDVVNYPVQQDSNENLTE-LDFI 480 Query: 8601 SRITFSNVWFAYDTDNWILKDLSMEVRRGEKIAIVGATGSGKTTIINILSRLYPYAKGSI 8780 I N+ D +I++D+++ + R +K+ I+G +G+GK+T LS+LY SI Sbjct: 481 QNIKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSI 540 Query: 8781 RIDNVELPDIASRSLRKMIGVVMQDVFLFSGTIRENLAFGNPDLPDEAIFEAARIVG-AD 8957 ++ +++ S+RK I + ++ FLF GTI+ENL G ++ D+ E A I+ Sbjct: 541 YLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMG--EIFDQNEIENACIMSQCH 598 Query: 8958 RFIDQLPGGYAYRVQENGAGLSAGQKQLIAFVRALLYDPQILVLDEATSSVDTETEMLID 9137 FI L Y+Y++ ENG+ LS GQKQ +A RA+L+ PQ+L+LDE+ S++D + LI Sbjct: 599 EFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIY 658 Query: 9138 AATAKLMQNRTSIIIAHRLSTVQKADRIIVLHKGVIKES 9254 ++ + I+I H + K ++ +V I ES Sbjct: 659 ETLHRM--DCLIILITHNDPSNFKYNKKLVFRNNRIIES 695 >ref|NP_958266.1|hypothetical protein Length = 438 Score = 47.0 bits (110), Expect = 9e-05 Identities = 27/71 (38%), Positives = 36/71 (50%) Frame = -1 Query: 24814 AEPAVQTESAVQTESAVQTESAVQTEPAVQTEPAVQTEPEVQTEPAAQTEPEVQTEPAAQ 24635 A P V E A+ A+ EP V+ EP + EPEV+ E + EPEV+ EP + Sbjct: 226 AVPVVSVEFERAAAEAIALAPALP-EPEVEPEP--EAEPEVEPELEPEVEPEVEVEPEVE 282 Query: 24634 TEPAAQTEPAA 24602 EP + EP A Sbjct: 283 VEPEVEVEPEA 293 Score = 44.7 bits (104), Expect = 5e-04 Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Frame = -1 Query: 24859 EVAAPPSAQADHTVQAEPAVQTESAVQTESAV---QTESAVQTEPAVQTEPAVQTEPEVQ 24689 E A P A V E A+ A+ + E + EP V+ E + EPEV+ Sbjct: 217 ETPAAPRPAAVPVVSVEFERAAAEAIALAPALPEPEVEPEPEAEPEVEPELEPEVEPEVE 276 Query: 24688 TEPAAQTEPEVQTEP-AAQTEPAAQTEPA 24605 EP + EPEV+ EP A PA PA Sbjct: 277 VEPEVEVEPEVEVEPEAVPAAPAPAPAPA 305 Score = 42.0 bits (97), Expect = 0.003 Identities = 28/80 (35%), Positives = 40/80 (50%) Frame = -1 Query: 24808 PAVQTESAVQTESAVQTESAVQTEPAVQTEPAVQTEPEVQTEPAAQTEPEVQTEPAAQTE 24629 PA +AV S +A + A+ PA+ EPEV+ EP A EPEV+ E + E Sbjct: 219 PAAPRPAAVPVVSVEFERAAAE---AIALAPALP-EPEVEPEPEA--EPEVEPELEPEVE 272 Query: 24628 PAAQTEPAAQTESAVQTEAD 24569 P + EP + E V+ E + Sbjct: 273 PEVEVEPEVEVEPEVEVEPE 292 Score = 37.4 bits (85), Expect = 0.075 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = -1 Query: 24871 DVIVEVAAPPSAQADHTVQAEPAVQTESAVQTESAVQTESAVQTEPAVQTEP-AVQTEPE 24695 + I A P + + +AEP V+ E + E V+ E V+ EP V+ EP AV P Sbjct: 240 EAIALAPALPEPEVEPEPEAEPEVEPELEPEVEPEVEVEPEVEVEPEVEVEPEAVPAAPA 299 Query: 24694 VQTEPA 24677 PA Sbjct: 300 PAPAPA 305 >ref|NP_818503.1|gp203 Length = 442 Score = 37.0 bits (84), Expect = 0.098 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 15/185 (8%) Frame = +3 Query: 8658 KDLSMEVRRGEKIAIVGATGSGKTTIIN--ILSRLYPYAKGSIRIDNVELPDIASRSLRK 8831 KD+S+ + + + + GATGSGK++ IN ++S LY +++ ++ P + Sbjct: 115 KDISLNLAKMPHLLVAGATGSGKSSFINSMLVSLLYRATPDRVKLIMID-PKCVELTPYN 173 Query: 8832 MIGVVMQDVFLFSGTIRENLAFGNPDLPD------EAIFEAAR-------IVGADRFIDQ 8972 I ++Q V + + L + ++ D EA A +V D D Sbjct: 174 GIPHLLQPVVTEADEAVKTLRWLTVEMDDRYRQMQEAGVRHAEKLGLPYIVVVVDELADL 233 Query: 8973 LPGGYAYRVQENGAGLSAGQKQLIAFVRALLYDPQILVLDEATSSVDTETEMLIDAATAK 9152 + GGY V+ N ++ QK A + +L + V D T + + + ATA Sbjct: 234 MMGGYKKEVEANIVRIA--QKARAAGIHLVLATQRPSV-DVVTGLIKSNVPSRLSFATAS 290 Query: 9153 LMQNR 9167 L +R Sbjct: 291 LTDSR 295 >ref|NP_892052.1|hypothetical protein Length = 188 Score = 36.2 bits (82), Expect = 0.17 Identities = 25/95 (26%), Positives = 39/95 (41%) Frame = -1 Query: 24820 VQAEPAVQTESAVQTESAVQTESAVQTEPAVQTEPAVQTEPEVQTEPAAQTEPEVQTEPA 24641 V E V +S ES V + + T+P++ + P V E + EP V T Sbjct: 26 VNVESLVTDKSIDPVESLVASGALASTDPSIISTELDSPSPSVNAEKLVEVEPLVTTASL 85 Query: 24640 AQTEPAAQTEPAAQTESAVQTEADLSDVGEVSIVP 24536 A EP A P +++ +D G ++VP Sbjct: 86 APDEPLATANPLTTGDASDND----NDSGAGTMVP 116 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 126,963,961 Number of Sequences: 14420 Number of extensions: 2622324 Number of successful extensions: 7655 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 4907 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7608 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 11836460188 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig45 (24,907 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_195228.1|thymidilate synthase 213 6e-55 ref|NP_570363.1|unknown 191 4e-48 ref|NP_064749.1|RP thymidylate synthase 70 8e-12 ref|NP_835555.1|hypothetical protein, similar to scaffolding pro... 69 3e-11 ref|NP_817552.1|gp103 68 4e-11 ref|NP_795404.1|head maturation protease 67 9e-11 ref|NP_958605.1|77ORF015 67 9e-11 ref|NP_039712.1|predicted 27.8Kd protein 63 2e-09 ref|NP_050150.1|ClpP-like protease 61 6e-09 ref|NP_817637.1|gp48 60 1e-08 ref|NP_046863.1|gp48 59 3e-08 ref|NP_542556.1|putative phage C31 protein gp16-like protein 57 7e-08 ref|NP_061501.1|ClpP protease 57 1e-07 ref|NP_858955.1|protease of the ClpP family 53 1e-06 ref|YP_077209.1|thymidylate synthase 52 3e-06 ref|NP_795465.1|putative ClpP protease ATP-dependent protease pr... 52 4e-06 ref|NP_795616.1|putative helicase 50 8e-06 ref|NP_795446.1|putative DEAD box family helicase 50 8e-06 ref|NP_049395.1|putative scaffolding protein 50 1e-05 ref|NP_038326.1|ORF25 49 2e-05 ref|NP_839925.1|putative ClpP protease 49 3e-05 ref|NP_076678.1|protease 49 3e-05 ref|NP_818463.1|gp163 47 9e-05 ref|NP_116498.1|putative ATP-dependent ClpP protein 47 1e-04 ref|NP_680515.1|putative helicase 46 2e-04 ref|NP_049421.1|putative helicase 45 3e-04 ref|YP_025030.1|putative ClpP-like protease 45 3e-04 ref|NP_049970.1|Predicted clp-protease 45 3e-04 ref|NP_047961.1|gp16 45 5e-04 ref|NP_695088.1|putative helicase 44 6e-04 ref|NP_049999.1|putative helicase 44 6e-04 ref|NP_049952.1|putative helicase 44 6e-04 ref|NP_056709.1|putative helicase 44 6e-04 ref|NP_803812.1|ORF246 43 0.001 ref|NP_445687.1|putative helicase 42 0.003 ref|NP_075503.1|protease 42 0.004 ref|NP_803338.1|scaffolding protease 42 0.004 ref|NP_818164.1|gp91 41 0.007 ref|YP_024499.1|putative helicase 40 0.011 ref|NP_050128.1|putative DEAH-family helicase 40 0.015 ref|YP_024839.1|Pas53 39 0.019 ref|NP_899255.1|ClpP 38 0.043 ref|NP_932523.1|hypothetical protein 35 0.28 ref|YP_024899.1|putative helicase 35 0.47 >ref|YP_195228.1|thymidilate synthase Length = 213 Score = 213 bits (543), Expect = 6e-55 Identities = 112/217 (51%), Positives = 149/217 (68%), Gaps = 5/217 (2%) Frame = -3 Query: 11192 MQVRLISATSPLISIDNKPLSAEGLMAYCARVSSPH-QENDSYEKLLAYCLEHKHWSVFE 11016 M V+L+S T AE +AY ARVS+P+ QEN +Y KLL+YC++H HWSVFE Sbjct: 3 MSVKLVSVTP----------DAEKTIAYIARVSNPNNQENPNYAKLLSYCIKHGHWSVFE 52 Query: 11015 MADMTVEIVTSRAISPQILRHRSFQFQEFSQRYAKAQAIETYRP----RRQDNKNRQNSL 10848 A MT+EI TSR I+ QILRHRSF FQEFSQRYA+ + P R QD+KNRQNS+ Sbjct: 53 QAHMTLEINTSRGIAAQILRHRSFTFQEFSQRYAETNLLGYEIPIPDLRSQDHKNRQNSV 112 Query: 10847 DDLDPSTCAWFDETQKNIAGLAMEKYNEALERGIAKECARVLLPLATQTKLYMKGSVRSW 10668 DD+ P + +++ YNE L +G+AKECAR +LPLAT T++YM G++RSW Sbjct: 113 DDISPEKKSVLQGQIDKHFRESIDLYNELLRQGVAKECARFVLPLATPTRIYMTGNLRSW 172 Query: 10667 IHYLEIRTLESTQKEHREIAIEIKHIFSERFPAVSKA 10557 +HY+++R+ TQKEH +IAIE K IFSE+FP +++A Sbjct: 173 MHYIDLRSSNGTQKEHMDIAIECKKIFSEQFPIINEA 209 >ref|NP_570363.1|unknown Length = 235 Score = 191 bits (484), Expect = 4e-48 Identities = 114/241 (47%), Positives = 141/241 (58%), Gaps = 4/241 (1%) Frame = -3 Query: 11267 SGQPAHEFSSDLVIFKP-FTIKKPVTMQVRLISATSPLISIDNKPLSAEGLMAYCARVSS 11091 + Q +H+ +F P F + K V LIS T AE L+AY ARVS+ Sbjct: 6 TAQQSHQHPHQSTLFNPTFNMSK-----VSLISVTP----------DAEELIAYLARVSN 50 Query: 11090 PHQE-NDSYEKLLAYCLEHKHWSVFEMADMTVEIVTSRAISPQILRHRSFQFQEFSQRYA 10914 + D ++L+ Y ++H HWS FEMA M VEI T+RAI+PQILRHRSF FQEFSQRYA Sbjct: 51 KDAKLGDPADRLIRYLIKHGHWSPFEMAHMVVEIETTRAIAPQILRHRSFSFQEFSQRYA 110 Query: 10913 KAQAIETYRP--RRQDNKNRQNSLDDLDPSTCAWFDETQKNIAGLAMEKYNEALERGIAK 10740 A E P RRQD KNRQNS+DDL A F + Y L G+AK Sbjct: 111 VADLGEFEVPELRRQDTKNRQNSIDDLPAEIVAEFQSEIDEVFETTRVLYQRMLSYGVAK 170 Query: 10739 ECARVLLPLATQTKLYMKGSVRSWIHYLEIRTLESTQKEHREIAIEIKHIFSERFPAVSK 10560 ECAR +LPL T TKLYM G++RSWIHY ++R TQ+EHR IA E K++ P V+K Sbjct: 171 ECARGILPLNTPTKLYMSGTIRSWIHYCQLRCGNGTQEEHRLIAEECKNLLYANLPNVAK 230 Query: 10559 A 10557 A Sbjct: 231 A 231 >ref|NP_064749.1|RP thymidylate synthase Length = 222 Score = 70.5 bits (171), Expect = 8e-12 Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 3/173 (1%) Frame = -3 Query: 11063 KLLAYCLEHKHWSVFEMADMTVEIVTSRAISPQILRHRSFQFQEFSQRYAKAQAIETYRP 10884 KL+ Y +HKH S F A + + ++ Q+++H+ ++ E S+RY + E Y P Sbjct: 51 KLIKYLAKHKHISPFGHAFASFHVKAPIFVARQLVKHKFLRWNEISRRYVDDEP-EFYTP 109 Query: 10883 ---RRQDNKNRQNSLDDLDPSTCAWFDETQKNIAGLAMEKYNEALERGIAKECARVLLPL 10713 R + +Q S ++P + + + A Y +AL+ GI+ E AR+LLP Sbjct: 110 DVWRGRSADKKQGSDGVVNPEYNPQYLDNKIKFA------YLQALDIGISPEQARMLLPQ 163 Query: 10712 ATQTKLYMKGSVRSWIHYLEIRTLESTQKEHREIAIEIKHIFSERFPAVSKAL 10554 +T T+ Y GS+ ++ +R E TQ E R +A +I ++ +P AL Sbjct: 164 STMTEWYWSGSLDAFADMCRLRCKEDTQYESRVVADQISEKMADLYPVSWAAL 216 >ref|NP_835555.1|hypothetical protein, similar to scaffolding protein Length = 245 Score = 68.6 bits (166), Expect = 3e-11 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 1/144 (0%) Frame = +1 Query: 11653 IFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGT 11832 + + E + D+ I +NS GG++ AG IY ++ + V+ +AAS + + +G Sbjct: 31 VLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIAMAGD 90 Query: 11833 KGKRASLPHSRIMIHQPSGGAQGQESDIIIQAXXXXXXXXXXXXXXASHTGKDVQQVRED 12012 + + P +R+MIH PS AQG+ D+ A A GK+ Q++ E Sbjct: 91 HIEMS--PVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKNKQELVEM 148 Query: 12013 SERDRWMNAQEALEYGIID-QIFE 12081 R+ W+NA EA+E G D ++FE Sbjct: 149 MARETWLNADEAIEQGFADSKMFE 172 >ref|NP_817552.1|gp103 Length = 286 Score = 68.2 bits (165), Expect = 4e-11 Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 16/171 (9%) Frame = +1 Query: 11611 GIDEHVAGLIMAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTM--QYIRP-DVS-- 11775 G++++ + QL EDP D++I +NSPGGSV AG+ ++D + RP D S Sbjct: 117 GVNDYSVEACLNQLALWHREDPNCDMHIVMNSPGGSVIAGMHLFDQIAAYSTRPWDTSDR 176 Query: 11776 -------TVCV-GMAASMGAFLLASGTKGKRASLPHSRIMIHQPSGGAQGQESDIIIQAX 11931 T+ V GMAASMG LL S +R P + +MIH+ S G G+ +I Sbjct: 177 PKGTHKTTMTVRGMAASMGGILLQS--VDERIIGPEAYLMIHEISAGTGGKIGEIEDMVG 234 Query: 11932 XXXXXXXXXXXXXASHTGKDVQQVREDS---ERDRWMNAQEALEYGIIDQI 12075 G + D+ D W+++ EAL YG +D+I Sbjct: 235 WYRHLCARIAKVFVHRAGGKITAEEFDAGWKRTDWWLDSDEALRYGFVDRI 285 >ref|NP_795404.1|head maturation protease Length = 268 Score = 67.0 bits (162), Expect = 9e-11 Identities = 44/140 (31%), Positives = 67/140 (47%) Frame = +1 Query: 11656 FLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTK 11835 FL+S E DI + +NS GG V G IY ++ +V V G+AAS+ + ++ +G Sbjct: 35 FLDSAGGE-DIQVRLNSGGGEVFVGSEIYSALKDYPGNVEVVITGLAASIASIIMLAGDV 93 Query: 11836 GKRASLPHSRIMIHQPSGGAQGQESDIIIQAXXXXXXXXXXXXXXASHTGKDVQQVREDS 12015 K + P ++IMIH S G+ G + + A TGK ++RE Sbjct: 94 IKAS--PMAQIMIHNASWGSYGDYRQLKHDSEVVENASISLAGMYAQKTGKQETEIRELL 151 Query: 12016 ERDRWMNAQEALEYGIIDQI 12075 + + W A A E G+ID I Sbjct: 152 DAETWFTANSAKEIGLIDDI 171 >ref|NP_958605.1|77ORF015 Length = 245 Score = 67.0 bits (162), Expect = 9e-11 Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 1/144 (0%) Frame = +1 Query: 11653 IFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGT 11832 + + E + D+ I +NS GG++ AG IY ++ + V+ +AAS + + +G Sbjct: 31 VLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIAMAGD 90 Query: 11833 KGKRASLPHSRIMIHQPSGGAQGQESDIIIQAXXXXXXXXXXXXXXASHTGKDVQQVRED 12012 + + P +R+MIH PS AQG+ D+ A A GK+ Q++ E Sbjct: 91 HIEMS--PVARMMIHNPSSIAQGEVKDLNHAAETLEHVGQIMAEAYAVRAGKNKQELIEM 148 Query: 12013 SERDRWMNAQEALEYGIID-QIFE 12081 ++ W+NA EA+E G D ++FE Sbjct: 149 MAKETWLNADEAIEQGFADSKMFE 172 >ref|NP_039712.1|predicted 27.8Kd protein Length = 243 Score = 62.8 bits (151), Expect = 2e-09 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 2/163 (1%) Frame = -3 Query: 11081 ENDSYEKLLAYCLEHKHWSVFEMADMTVEIVTSRAISPQILRHRSFQFQEFSQRYAKAQA 10902 EN+ Y L + ++ H SVFE A T I SR++ ++ RHR F SQRY Sbjct: 65 ENEDY---LNHIIDLGHESVFEHASATFYIEASRSVLTELERHRHLSFSVVSQRYVDPTD 121 Query: 10901 IETYRPRR--QDNKNRQNSLDDLDPSTCAWFDETQKNIAGLAMEKYNEALERGIAKECAR 10728 + + P + + + ++ L + S + D ++I ++ L R A+E AR Sbjct: 122 LGIHLPPALFKLHPDDRDDLVHIMESVSSEIDAVYEHIVNRLADR---GLPRKQAREAAR 178 Query: 10727 VLLPLATQTKLYMKGSVRSWIHYLEIRTLESTQKEHREIAIEI 10599 +LP T + + + G+ R+W + ++ R E+ E RE+A E+ Sbjct: 179 AVLPNMTNSPMVVTGNHRAWRYVIKARWHEAADAEIRELAGEL 221 >ref|NP_050150.1|ClpP-like protease Length = 242 Score = 60.8 bits (146), Expect = 6e-09 Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 1/139 (0%) Frame = +1 Query: 11683 DIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTKGKRASLPHS 11862 D+ + +NSPGG V AG IY ++ + V G A S +++ + + + + P + Sbjct: 46 DVTLEINSPGGYVDAGSEIYTALKEYQGQVIAKITGQACSAASWIALAADRIEMS--PTA 103 Query: 11863 RIMIHQPSGGAQGQESDIIIQAXXXXXXXXXXXXXXASHTGKDVQQVREDSERDRWMNAQ 12042 ++MIH+ S + G D+ + TG D Q+V WMNA+ Sbjct: 104 QMMIHRASTISIGNSDDLASDLNALNSLDKSFVDLYSQRTGLDAQEVYRLMCNTTWMNAK 163 Query: 12043 EALEYGIIDQI-FEKRPKP 12096 EA++ G D+I F+ KP Sbjct: 164 EAVDKGFADEIMFQNDKKP 182 >ref|NP_817637.1|gp48 Length = 235 Score = 59.7 bits (143), Expect = 1e-08 Identities = 55/204 (26%), Positives = 84/204 (41%), Gaps = 15/204 (7%) Frame = -3 Query: 11138 PLSAEGLMAYCAR-----VSSPHQENDSYEKLLAYCLEHKHWSVFEMADMTVEIVTSRAI 10974 P SA+ L + R S P+ L + L+ H SV E A T I SR++ Sbjct: 27 PSSADELAEFAGRNCYRSFSRPNPGTRENVDYLKHILDVGHESVLEHASATFYIEASRSV 86 Query: 10973 SPQILRHRSFQFQEFSQRYAKAQAIETYRPRRQDNKNRQNSLDDLDPSTCAWF--DETQK 10800 ++ RHR F SQRY + + P D +D +F E + Sbjct: 87 LTELERHRHLSFSVVSQRYVDPTELGVHEPPAVK--------DLIDAPGRGYFRAKELLE 138 Query: 10799 NIAGLAMEKYNE--------ALERGIAKECARVLLPLATQTKLYMKGSVRSWIHYLEIRT 10644 I + E Y+E L R A+E AR +LP T + + + G+ R+W + ++ R Sbjct: 139 EIQHASAEAYDELVTIYAEAGLGRKKAREAARAVLPNMTNSPMVVTGNHRAWRYVIKARW 198 Query: 10643 LESTQKEHREIAIEIKHIFSERFP 10572 E+ E R +A E+ E P Sbjct: 199 HEAADAEIRSLAGELLRQLREIAP 222 >ref|NP_046863.1|gp48 Length = 235 Score = 58.5 bits (140), Expect = 3e-08 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 22/229 (9%) Frame = -3 Query: 11192 MQVRLISAT---------SPLISIDNKPLSAEGLMAYCAR-----VSSPHQENDSYEKLL 11055 M+V+LI++T + + D SA+ L + R P+ + L Sbjct: 1 MKVQLIASTILEDPSWAGTDYVGDDETVTSADELAEFAGRNCYLSFDRPNPKTRENVDYL 60 Query: 11054 AYCLEHKHWSVFEMADMTVEIVTSRAISPQILRHRSFQFQEFSQRYAKAQAIETYRPRRQ 10875 + L+ H SV E + T I SR++ ++ RHR F SQRY + + P Sbjct: 61 NHILDVGHESVLEHSSATFYIEASRSVLTELERHRHLSFSVVSQRYVDPTELGIHVPP-- 118 Query: 10874 DNKNRQNSLDDLDPSTCAWFDETQKNIAGLAMEKY--------NEALERGIAKECARVLL 10719 + +L S E ++ A E Y + R A+E AR +L Sbjct: 119 -------AFTELSGSDADKAKEVLLDVQSFAQEAYEYLVHIFSDAGFPRKKAREAARAVL 171 Query: 10718 PLATQTKLYMKGSVRSWIHYLEIRTLESTQKEHREIAIEIKHIFSERFP 10572 P T + + + G+ R+W + ++ R E+ E RE+A E+ E P Sbjct: 172 PNMTNSPMVVTGNHRAWRYVIKNRWHEAADAEIRELAGELLRQLREIAP 220 >ref|NP_542556.1|putative phage C31 protein gp16-like protein Length = 234 Score = 57.4 bits (137), Expect = 7e-08 Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 11/183 (6%) Frame = -3 Query: 11072 SYEKLLAYCLEHKHWSVFE--MADMTVEIVTSRAISPQILRHRSFQFQEFSQRYAKAQAI 10899 ++E L+ L H+ FE A VE + SR+ Q+ RHR F SQRY Sbjct: 46 THEALMGELLRRGHFGPFEHIQAFFAVEGL-SRSAMAQVTRHRHMSFDVQSQRYCDFSDK 104 Query: 10898 ETYRPRRQDNKNRQNSLDDLDPSTCAWFDETQKNIAGL---------AMEKYNEALERGI 10746 P D KN + +D+ +D ++ G ++E Y + +E+G+ Sbjct: 105 NIVIPPG-DKKNP--AAEDV---VLGQYDGPAEDFTGADALEGHFVNSVELYEKLIEQGM 158 Query: 10745 AKECARVLLPLATQTKLYMKGSVRSWIHYLEIRTLESTQKEHREIAIEIKHIFSERFPAV 10566 AKE AR +LP+ + + + R+ +H+ ++R Q E RE A ++ E P V Sbjct: 159 AKEDARFVLPIGVEVDMTFSANARTLMHFFDLRKNMKAQWEAREFATKVLEECKEWSPLV 218 Query: 10565 SKA 10557 A Sbjct: 219 FNA 221 >ref|NP_061501.1|ClpP protease Length = 296 Score = 56.6 bits (135), Expect = 1e-07 Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 3/144 (2%) Frame = +1 Query: 11659 LESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTK- 11835 L S + D+ + +NSPGG V GL IY+ ++ + V+ +G+AAS +F+ +G + Sbjct: 71 LRSIGNDVDVTVNINSPGGDVFEGLAIYNLLREHKGKVTVNIIGLAASAASFIAMAGDEI 130 Query: 11836 --GKRASLPHSRIMIHQPSGGAQGQESDIIIQAXXXXXXXXXXXXXXASHTGKDVQQVRE 12009 G+ A L MIH A G +D+ A A T D+ + + Sbjct: 131 RIGRAAFL-----MIHNAWLIAMGNRNDLREIADWLEPFDMTLADIYAQRTEIDIDDIVK 185 Query: 12010 DSERDRWMNAQEALEYGIIDQIFE 12081 + + W+ +EA++ G D E Sbjct: 186 QMDAETWIGGREAVDKGWADAFLE 209 >ref|NP_858955.1|protease of the ClpP family Length = 245 Score = 53.1 bits (126), Expect = 1e-06 Identities = 41/164 (25%), Positives = 70/164 (42%) Frame = +1 Query: 11584 RERIIFLGSGIDEHVAGLIMAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIR 11763 RE IF G D G A + +E DI + ++SPGG + AGL IY+ + + Sbjct: 41 RELNIFSVIGEDFFGEGTTSAHIASFLNEIGPGDITVNIDSPGGDMFAGLAIYNLLLAHK 100 Query: 11764 PDVSTVCVGMAASMGAFLLASGTKGKRASLPHSRIMIHQPSGGAQGQESDIIIQAXXXXX 11943 V+ +G AAS + + +G + P + IMIH G ++ + Sbjct: 101 GRVTVNVIGRAASAASVIAMAGDQINMH--PSAFIMIHNCHLVVGGNSKELAEVSEMMKP 158 Query: 11944 XXXXXXXXXASHTGKDVQQVREDSERDRWMNAQEALEYGIIDQI 12075 + TG + + + + WM+A+E+++ G D I Sbjct: 159 FDSAMADIYVARTGMSKDTIVQMMDAETWMSAEESVKLGFADSI 202 >ref|YP_077209.1|thymidylate synthase Length = 257 Score = 52.0 bits (123), Expect = 3e-06 Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 10/183 (5%) Frame = -3 Query: 11126 EGLMAYCARVSSPHQENDSYEKLLAY---------CLEHKHWSVFEMADMTVEIV-TSRA 10977 E ++A A++S + D +EK + + H +WSV E + T I SR Sbjct: 13 EKVVAIAAKMSRSRKGWDYHEKEMTDEEIETWIRDAILHGYWSVLEHSVYTFSIEGISRV 72 Query: 10976 ISPQILRHRSFQFQEFSQRYAKAQAIETYRPRRQDNKNRQNSLDDLDPSTCAWFDETQKN 10797 S Q++RHR + + S R+A+ E Y+P + +++ E Sbjct: 73 ASHQLVRHRIASYTQMSHRFAR-PIDEYYKPIIPISIKKRD------------VHELVNK 119 Query: 10796 IAGLAMEKYNEALERGIAKECARVLLPLATQTKLYMKGSVRSWIHYLEIRTLESTQKEHR 10617 A E Y E L+ GI +E AR +LP A T + + + R ++ +R Q E R Sbjct: 120 AYNNAYEIYYELLKSGIPEEDARYVLPNAVNTNIVVTMNARELYNFFSLRLCSRAQWEIR 179 Query: 10616 EIA 10608 IA Sbjct: 180 AIA 182 >ref|NP_795465.1|putative ClpP protease ATP-dependent protease proteolytic subunit Length = 221 Score = 51.6 bits (122), Expect = 4e-06 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 1/147 (0%) Frame = +1 Query: 11638 IMAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFL 11817 + A+ I + + DI + VNS GG V+ G IY ++ + V+ GMAAS + Sbjct: 28 VSAKSIIEKLPEDNSDIVLEVNSNGGLVTVGSEIYTALRNYKGKVTAEITGMAASAASVA 87 Query: 11818 LASGTKGKRASLPHSRIMIHQP-SGGAQGQESDIIIQAXXXXXXXXXXXXXXASHTGKDV 11994 + K + P +++M+H+ G D+ + + TGK Sbjct: 88 VMGADKVVMS--PTAQMMVHKALFNWVAGNSDDLDKASNALKSSDKAIVNAYVAKTGKSE 145 Query: 11995 QQVREDSERDRWMNAQEALEYGIIDQI 12075 ++ + + +M+AQEA+E G D++ Sbjct: 146 DEIMDLMRNETFMSAQEAVENGFADEV 172 >ref|NP_795616.1|putative helicase Length = 409 Score = 50.4 bits (119), Expect = 8e-06 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Frame = +3 Query: 22749 AKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEIKSLERIQILRELRAGDVEVLVGV 22928 AKG +A+V T + S + D F + G +S+ + + ER + ++ R G + +LV Sbjct: 173 AKGKQAIVYTHSVEASHLVSDMFNQAGYQSQSVSGKTPKSEREEAMQAFRDGKLRILVNC 232 Query: 22929 NLLREGLDLPEVSLVAILDADKEGFLRNTRSL---MQIAGRAARNVDGFVVFYAD 23084 L EG+DLP V + + LR T+SL +Q A R DG + D Sbjct: 233 ELFTEGIDLPNVDVCIM--------LRPTQSLSLYLQFAMRPLNPRDGKIAIIID 279 >ref|NP_795446.1|putative DEAD box family helicase Length = 409 Score = 50.4 bits (119), Expect = 8e-06 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Frame = +3 Query: 22749 AKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEIKSLERIQILRELRAGDVEVLVGV 22928 AKG +A+V T + S + D F + G +S+ + + ER + ++ R G + +LV Sbjct: 173 AKGKQAIVYTHSVEASHLVSDMFNQAGYQSQSVSGKTPKSEREEAMQAFRDGKLRILVNC 232 Query: 22929 NLLREGLDLPEVSLVAILDADKEGFLRNTRSL---MQIAGRAARNVDGFVVFYAD 23084 L EG+DLP V + + LR T+SL +Q A R DG + D Sbjct: 233 ELFTEGIDLPNVDVCIM--------LRPTQSLSLYLQFAMRPLNPRDGKIAIIID 279 >ref|NP_049395.1|putative scaffolding protein Length = 222 Score = 49.7 bits (117), Expect = 1e-05 Identities = 34/137 (24%), Positives = 61/137 (44%) Frame = +1 Query: 11665 SEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTKGKR 11844 + D + +I + + S GG V A IY ++ + G+AAS + + +G + Sbjct: 37 TNDEDEEITLNIASNGGDVFAASEIYTMLRDSGKRIVVNIQGLAASAASVISMAGNTVRI 96 Query: 11845 ASLPHSRIMIHQPSGGAQGQESDIIIQAXXXXXXXXXXXXXXASHTGKDVQQVREDSERD 12024 + P + IMIH+ S G G D+ Q+ TG ++ E ++ Sbjct: 97 S--PTAHIMIHKASSGFVGNSDDMEHQSVVLNSIDESIALAYEMKTGLKQSELLELMAKE 154 Query: 12025 RWMNAQEALEYGIIDQI 12075 W+NA+ A++ G D+I Sbjct: 155 TWLNAKTAVDKGFADEI 171 >ref|NP_038326.1|ORF25 Length = 221 Score = 49.3 bits (116), Expect = 2e-05 Identities = 33/135 (24%), Positives = 62/135 (45%) Frame = +1 Query: 11671 DPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTKGKRAS 11850 D + +I + + S GG V A IY ++ + G+AAS + + +G + + Sbjct: 39 DKDEEITLNIASNGGDVFAASEIYTMLKASGKRIVVNVQGLAASAASVISMAGDTVRIS- 97 Query: 11851 LPHSRIMIHQPSGGAQGQESDIIIQAXXXXXXXXXXXXXXASHTGKDVQQVREDSERDRW 12030 P ++IMIH+ S G +G D+ Q+ TG ++ + ++ W Sbjct: 98 -PTAQIMIHKASTGIRGNSDDLEHQSAVLSSIDESIALAYEMKTGLKQTELLDLMAKETW 156 Query: 12031 MNAQEALEYGIIDQI 12075 +NA+ A++ G D+I Sbjct: 157 LNAKTAVDKGFADEI 171 >ref|NP_839925.1|putative ClpP protease Length = 235 Score = 48.5 bits (114), Expect = 3e-05 Identities = 33/133 (24%), Positives = 57/133 (42%) Frame = +1 Query: 11677 ERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTKGKRASLP 11856 + +I + + S GG V A IY ++ V+ G+AAS + + +G + P Sbjct: 42 DEEIVLNIASNGGDVFAASEIYTAIKMNGKPVTVNIQGLAASAASVIAMAGDTVNIS--P 99 Query: 11857 HSRIMIHQPSGGAQGQESDIIIQAXXXXXXXXXXXXXXASHTGKDVQQVREDSERDRWMN 12036 +++MIH+ G+QG D +A TG + + + WM Sbjct: 100 TAQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDLLQLMSNETWMT 159 Query: 12037 AQEALEYGIIDQI 12075 AQ+A++ G D I Sbjct: 160 AQDAVDKGFADNI 172 >ref|NP_076678.1|protease Length = 235 Score = 48.5 bits (114), Expect = 3e-05 Identities = 33/133 (24%), Positives = 57/133 (42%) Frame = +1 Query: 11677 ERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTKGKRASLP 11856 + +I + + S GG V A IY ++ V+ G+AAS + + +G + P Sbjct: 42 DEEIVLNIASNGGDVFAASEIYTAIKMNGKPVTVNIQGLAASAASVIAMAGDTVNIS--P 99 Query: 11857 HSRIMIHQPSGGAQGQESDIIIQAXXXXXXXXXXXXXXASHTGKDVQQVREDSERDRWMN 12036 +++MIH+ G+QG D +A TG + + + WM Sbjct: 100 TAQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDLLQLMSNETWMT 159 Query: 12037 AQEALEYGIIDQI 12075 AQ+A++ G D I Sbjct: 160 AQDAVDKGFADNI 172 >ref|NP_818463.1|gp163 Length = 236 Score = 47.0 bits (110), Expect = 9e-05 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 13/149 (8%) Frame = +1 Query: 11668 EDPERDIYIYVNSPGGSVSAGLGIYDTM----------QYIRPDVSTVCVGMAASMGAFL 11817 +DPE + V+SPGG ++G D + YI V GMAASMG + Sbjct: 93 QDPESKWNLIVDSPGGYCNSGFHAIDQLIEYSAWGGGSHYITMTVR----GMAASMGGII 148 Query: 11818 LASGTKGKRASLPHSRIMIHQPSGGAQGQESDIIIQAXXXXXXXXXXXXXXASHTGKDVQ 11997 L + + R +++I+IH S G G ++ GK + Sbjct: 149 LQAADE--RVMGRNAQILIHPISSGLYGGRGELHDYMGRIEMLTAQAEKLFKHRAGKKLP 206 Query: 11998 QVREDSE---RDRWMNAQEALEYGIIDQI 12075 + + + ++ W+ A+EALEY ++D+I Sbjct: 207 RKKLKNALMYKNWWIGAEEALEYALVDRI 235 >ref|NP_116498.1|putative ATP-dependent ClpP protein Length = 237 Score = 46.6 bits (109), Expect = 1e-04 Identities = 30/133 (22%), Positives = 57/133 (42%) Frame = +1 Query: 11677 ERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTKGKRASLP 11856 + ++ + + S GG V + IY ++ ++ G+AAS + + +G + P Sbjct: 44 DEEVILNIASNGGDVFSASEIYTKLKNSNKNIVVNIEGIAASAASVIAMAGDTVNIS--P 101 Query: 11857 HSRIMIHQPSGGAQGQESDIIIQAXXXXXXXXXXXXXXASHTGKDVQQVREDSERDRWMN 12036 +++MIH+ G+QG D +A TG + + + WM Sbjct: 102 TAQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDLLQLMSNETWMT 161 Query: 12037 AQEALEYGIIDQI 12075 AQ+A++ G D I Sbjct: 162 AQDAVDKGFADNI 174 >ref|NP_680515.1|putative helicase Length = 455 Score = 45.8 bits (107), Expect = 2e-04 Identities = 21/81 (25%), Positives = 48/81 (59%) Frame = +3 Query: 22740 RHTAKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEIKSLERIQILRELRAGDVEVL 22919 +H A G +A+V + S+ + + F+ GI + + ++ +R +I+ + +AG + +L Sbjct: 210 QHLAGGRQAIVYAHSIEASKQVVEAFQSAGITAVHADAKTPKGQRDRIMADFKAGKITIL 269 Query: 22920 VGVNLLREGLDLPEVSLVAIL 22982 V+L+ EG ++P+V ++ +L Sbjct: 270 SNVDLISEGFNVPDVGVIIML 290 >ref|NP_049421.1|putative helicase Length = 443 Score = 45.4 bits (106), Expect = 3e-04 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 11/138 (7%) Frame = +3 Query: 22704 KGQIDDLL-----AEIRRH---TAKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEI 22859 K +DD + ++ RH AKG +A+V T + SE + + FKK G S + + Sbjct: 188 KKSVDDTMKRVIYGDVIRHYEKLAKGKQAIVYTHSVEASESVSNTFKKNGYTSIAISGKT 247 Query: 22860 KSLERIQILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSL---MQ 23030 R + ++ R ++ ++V L EG+DLP V + + LR T+SL +Q Sbjct: 248 PPEVRERAMQAFRDRELTIMVNCELFTEGIDLPNVDVCIM--------LRPTQSLSLYLQ 299 Query: 23031 IAGRAARNVDGFVVFYAD 23084 A RA +G D Sbjct: 300 FAMRALNPREGKTAIIID 317 >ref|YP_025030.1|putative ClpP-like protease Length = 228 Score = 45.4 bits (106), Expect = 3e-04 Identities = 27/130 (20%), Positives = 58/130 (44%) Frame = +1 Query: 11683 DIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTKGKRASLPHS 11862 D+ + + S GG V I + ++ + +V+ + A S + + K + A P + Sbjct: 42 DVTLEITSNGGEVDPATEICNALRSYQGNVTAKVMSNAYSAASIVAMGANKVQMA--PGA 99 Query: 11863 RIMIHQPSGGAQGQESDIIIQAXXXXXXXXXXXXXXASHTGKDVQQVREDSERDRWMNAQ 12042 ++MIH+ S A G ++ + ++ TGK +++ W++A Sbjct: 100 KMMIHRASSDASGNSHEMDAASGMLQTTDSAIASLYSAKTGKPADDFLALMDKETWLDAD 159 Query: 12043 EALEYGIIDQ 12072 +A+E G+ D+ Sbjct: 160 QAIELGLADE 169 >ref|NP_049970.1|Predicted clp-protease Length = 224 Score = 45.1 bits (105), Expect = 3e-04 Identities = 34/137 (24%), Positives = 60/137 (43%) Frame = +1 Query: 11665 SEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTKGKR 11844 + D +I + + S GG V A IY ++ + G+AAS A +++ R Sbjct: 40 ANDEGEEITLNIASNGGDVFAASEIYTMLKSCGKRIVANVQGLAAS-AASVISMAADTVR 98 Query: 11845 ASLPHSRIMIHQPSGGAQGQESDIIIQAXXXXXXXXXXXXXXASHTGKDVQQVREDSERD 12024 S P + +MIH+ S G G D+ Q+ TG ++ + ++ Sbjct: 99 IS-PTAHMMIHKASSGLVGNSDDMEHQSVVLNSIDESIALAYEMKTGLKQTELLDLMAKE 157 Query: 12025 RWMNAQEALEYGIIDQI 12075 W+NA+ A++ G D+I Sbjct: 158 TWLNAKTAVDKGFADEI 174 >ref|NP_047961.1|gp16 Length = 237 Score = 44.7 bits (104), Expect = 5e-04 Identities = 43/151 (28%), Positives = 62/151 (41%), Gaps = 1/151 (0%) Frame = -3 Query: 11057 LAYCLEHKHWSVFEMADMTVEIV-TSRAISPQILRHRSFQFQEFSQRYAKAQAIETYRPR 10881 L L H+SV E A +T + SRA+ ++ RHR F SQRY E P Sbjct: 66 LGNILAQGHFSVLEHASVTFLVRDVSRALLTELSRHRHLSFSVVSQRYVDHADTEPVVPP 125 Query: 10880 RQDNKNRQNSLDDLDPSTCAWFDETQKNIAGLAMEKYNEALERGIAKECARVLLPLATQT 10701 + P + + Q AG+ + + R A+E AR LLP A Sbjct: 126 AIRGTELEK------PFREDYAEALQAYDAGVKLLRAR-GYGRKQAREAARALLPNAAPV 178 Query: 10700 KLYMKGSVRSWIHYLEIRTLESTQKEHREIA 10608 + + G++R+W L R + E RE A Sbjct: 179 DMVVTGNLRAWRDVLGKRWHVAADAEIREFA 209 >ref|NP_695088.1|putative helicase Length = 443 Score = 44.3 bits (103), Expect = 6e-04 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 11/138 (7%) Frame = +3 Query: 22704 KGQIDDLL-----AEIRRH---TAKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEI 22859 K +DD + ++ RH AKG +A+V T + SE + + F + G S + + Sbjct: 188 KKSVDDTMKRVIYGDVIRHYEKLAKGKQAIVYTHSVEASESVSNTFNEQGYTSIAISGKT 247 Query: 22860 KSLERIQILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSL---MQ 23030 R + ++ R G + ++V L EG+DLP V + + LR T+SL +Q Sbjct: 248 PPEVRDRAMQAFRDGKLTIMVNCELFTEGIDLPNVDVCIM--------LRPTQSLSLYLQ 299 Query: 23031 IAGRAARNVDGFVVFYAD 23084 A RA +G D Sbjct: 300 FAMRALNPREGKTAIIID 317 >ref|NP_049999.1|putative helicase Length = 443 Score = 44.3 bits (103), Expect = 6e-04 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 11/138 (7%) Frame = +3 Query: 22704 KGQIDDLL-----AEIRRH---TAKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEI 22859 K +DD + ++ RH AKG +A+V T + SE + + F + G S + + Sbjct: 188 KKSVDDTMKRVIYGDVIRHYEKLAKGKQAIVYTHSVEASESVSNTFNEQGYTSIAISGKT 247 Query: 22860 KSLERIQILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSL---MQ 23030 R + ++ R G + ++V L EG+DLP V + + LR T+SL +Q Sbjct: 248 PPEVRDRAMQAFRDGKLTIMVNCELFTEGIDLPNVDVCIM--------LRPTQSLSLYLQ 299 Query: 23031 IAGRAARNVDGFVVFYAD 23084 A RA +G D Sbjct: 300 FAMRALNPREGKTAIIID 317 >ref|NP_049952.1|putative helicase Length = 443 Score = 44.3 bits (103), Expect = 6e-04 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 11/138 (7%) Frame = +3 Query: 22704 KGQIDDLL-----AEIRRH---TAKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEI 22859 K +DD + ++ RH AKG +A+V T + SE + + F + G S + + Sbjct: 188 KKSVDDTMKRVIYGDVIRHYEKLAKGKQAIVYTHSVEASESVSNTFNEQGYTSIAISGKT 247 Query: 22860 KSLERIQILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSL---MQ 23030 R + ++ R G + ++V L EG+DLP V + + LR T+SL +Q Sbjct: 248 PPEVRDRAMQAFRDGKLTIMVNCELFTEGIDLPNVDVCIM--------LRPTQSLSLYLQ 299 Query: 23031 IAGRAARNVDGFVVFYAD 23084 A RA +G D Sbjct: 300 FAMRALNPREGKTAIIID 317 >ref|NP_056709.1|putative helicase Length = 443 Score = 44.3 bits (103), Expect = 6e-04 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 11/138 (7%) Frame = +3 Query: 22704 KGQIDDLL-----AEIRRH---TAKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEI 22859 K +DD + ++ RH AKG +A+V T + SE + + F + G S + + Sbjct: 188 KKSVDDTMKRVIYGDVIRHYEKLAKGKQAIVYTHSVEASESVSNTFNEQGYTSIAISGKT 247 Query: 22860 KSLERIQILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSL---MQ 23030 R + ++ R G + ++V L EG+DLP V + + LR T+SL +Q Sbjct: 248 PPEVRDRAMQAFRDGKLTIMVNCELFTEGIDLPNVDVCIM--------LRPTQSLSLYLQ 299 Query: 23031 IAGRAARNVDGFVVFYAD 23084 A RA +G D Sbjct: 300 FAMRALNPREGKTAIIID 317 >ref|NP_803812.1|ORF246 Length = 218 Score = 43.1 bits (100), Expect = 0.001 Identities = 23/65 (35%), Positives = 37/65 (56%) Frame = +1 Query: 23719 SGEPFFYHPVEVATILLNELPLDGVSVAAALLHDVIEDSGYTYDDLVAELGVEVADIVEG 23898 SG+P+++H ++VA + L + AA LHDVIED+ T DL + V ++V Sbjct: 54 SGKPYWHHLLQVAE-MAQLFDLSHAAYKAAWLHDVIEDTAVTASDLTKLFSIPVVNLVTE 112 Query: 23899 LTKIS 23913 LT ++ Sbjct: 113 LTNVT 117 >ref|NP_445687.1|putative helicase Length = 559 Score = 42.0 bits (97), Expect = 0.003 Identities = 27/98 (27%), Positives = 51/98 (52%) Frame = +3 Query: 22758 HKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEIKSLERIQILRELRAGDVEVLVGVNLL 22937 + LV+ +++ L + ++ GI + ++ S+ K ER++ + L+ ++VL+ +L Sbjct: 424 YPCLVIVRRIAIAKKLAEIMRENGIIADWVSSKTKLEERMEKIEALKNEKLQVLISTSLA 483 Query: 22938 REGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAAR 23051 EGLD+P + LV +L K L+Q GR R Sbjct: 484 DEGLDIPNLRLVVLLTQGKSRI-----KLIQRIGRVMR 516 >ref|NP_075503.1|protease Length = 257 Score = 41.6 bits (96), Expect = 0.004 Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%) Frame = +1 Query: 11683 DIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTKGKRASLPHS 11862 +I +++NS GGSV G IY+ ++ ++ +AAS+ + + SG +S Sbjct: 53 EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSG--DTIFMHKNS 110 Query: 11863 RIMIHQPSGGAQGQESDIIIQAXXXXXXXXXXXXXXASHTGKDVQQ--VREDSERDRWMN 12036 +MIH G ++ A KD+ Q +++ + + W+ Sbjct: 111 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLD-KAKDLDQEHLKQMLDAETWLT 169 Query: 12037 AQEALEYGIIDQI 12075 A+EAL +G+ID+I Sbjct: 170 AEEALSFGLIDEI 182 >ref|NP_803338.1|scaffolding protease Length = 257 Score = 41.6 bits (96), Expect = 0.004 Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%) Frame = +1 Query: 11683 DIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTKGKRASLPHS 11862 +I +++NS GGSV G IY+ ++ ++ +AAS+ + + SG +S Sbjct: 53 EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSG--DTIFMHKNS 110 Query: 11863 RIMIHQPSGGAQGQESDIIIQAXXXXXXXXXXXXXXASHTGKDVQQ--VREDSERDRWMN 12036 +MIH G ++ A KD+ Q +++ + + W+ Sbjct: 111 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLD-KAKDLDQEHLKQMLDAETWLT 169 Query: 12037 AQEALEYGIIDQI 12075 A+EAL +G+ID+I Sbjct: 170 AEEALSFGLIDEI 182 >ref|NP_818164.1|gp91 Length = 235 Score = 40.8 bits (94), Expect = 0.007 Identities = 46/208 (22%), Positives = 86/208 (41%), Gaps = 17/208 (8%) Frame = -3 Query: 11129 AEGLMAYCARVSSPHQENDSYEK--LLAYCLEHKHWSVFEMADMTVEIVTSRAISPQILR 10956 ++ + AR S+ D E+ L+ + +H + FE + T + + + R Sbjct: 20 SDSRVCVAARTSTAGAGADDSERYGLINALMRDRHGTPFEHMNATFRVTAPIFVWREHHR 79 Query: 10955 HRS-FQFQEFSQRYAKAQAI-----ETYRP--RRQDNKNRQNSLDDLDPSTCAWFDETQK 10800 HRS + + E S RY + + ET RP + + +N L+ A Sbjct: 80 HRSGWSYNEESGRYKQLDPVFYVPGET-RPIAKVEGTRNMDYVLEKGTADQHALIANAMW 138 Query: 10799 NIAGLAMEKYNEALERGIAKECARVLLPLATQTKLYMKGSVRSWIHYLEIRTLES----- 10635 A +Y L+ GI +E AR++LP+ + + + RS +H+L +R + Sbjct: 139 ATCSGAYRQYEAMLDAGIVREVARMVLPVNIMSTCIVTCNARSLMHFLSLRQRHNDARFP 198 Query: 10634 --TQKEHREIAIEIKHIFSERFPAVSKA 10557 Q E +A + + +E P V ++ Sbjct: 199 SKPQYEINLVANGYERLLAEEAPLVHRS 226 >ref|YP_024499.1|putative helicase Length = 582 Score = 40.0 bits (92), Expect = 0.011 Identities = 23/85 (27%), Positives = 47/85 (55%) Frame = +3 Query: 22797 EDLDDYFKKVGIRSRYLHSEIKSLERIQILRELRAGDVEVLVGVNLLREGLDLPEVSLVA 22976 + + + + + +LH EI S R + L ++R+G ++V++ +L+ EG+D+ ++ + Sbjct: 459 DTISEMLNDLDVEHYFLHGEIDSETRREKLNDMRSGKLKVMIATSLIDEGVDISGINAL- 517 Query: 22977 ILDADKEGFLRNTRSLMQIAGRAAR 23051 IL A ++ R +Q GRA R Sbjct: 518 ILGAGG----KSLRQTLQRIGRALR 538 >ref|NP_050128.1|putative DEAH-family helicase Length = 455 Score = 39.7 bits (91), Expect = 0.015 Identities = 19/78 (24%), Positives = 41/78 (52%) Frame = +3 Query: 22749 AKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEIKSLERIQILRELRAGDVEVLVGV 22928 A KA++ + + + + F K I ++ + + K +R + +++ R G +++LV Sbjct: 214 ANNTKAIIYSYSVHSCQQIAKEFNKNNIPAKEVDGKTKKEDRDKAMQDFRDGKIKILVNA 273 Query: 22929 NLLREGLDLPEVSLVAIL 22982 L EG+D+P+ V +L Sbjct: 274 ELYGEGVDVPDCETVIML 291 >ref|YP_024839.1|Pas53 Length = 567 Score = 39.3 bits (90), Expect = 0.019 Identities = 31/105 (29%), Positives = 43/105 (40%) Frame = +3 Query: 22749 AKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEIKSLERIQILRELRAGDVEVLVGV 22928 A K + T T + L GIR+ L ER ILR L+ G+ +V+ Sbjct: 249 AHDRKGVAFTPTVATAHALAAALCARGIRTEALDGTTHKDERRAILRRLKTGETQVVTNC 308 Query: 22929 NLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAARNVDG 23063 +L EG D P +S V + K L +Q+ GR R G Sbjct: 309 GVLTEGFDEPSISCVVVARPTKFHGL-----YVQMIGRGTRLYPG 348 >ref|NP_899255.1|ClpP Length = 239 Score = 38.1 bits (87), Expect = 0.043 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%) Frame = +1 Query: 11641 MAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCV-GMAASMGAFL 11817 M Q++ SE +Y+++N+PGG+ +A I D + + C G S G + Sbjct: 35 MLQILHTASETDL--VYLHLNTPGGNFAAACQICDAIMQSKAGAVIACAEGEVCSAGTMI 92 Query: 11818 LASGTKGKRASLPHSRIMIHQPSGGAQGQESDIIIQA 11928 + G S P + M H SGG G+ D + QA Sbjct: 93 FLA-CNGWHVS-PFATFMFHTSSGGQIGKMPDTLKQA 127 >ref|NP_932523.1|hypothetical protein Length = 155 Score = 35.4 bits (80), Expect = 0.28 Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 9/151 (5%) Frame = +1 Query: 23698 HEGEKRASGEPFFYHPVEVATILLNELPLDGVSVAAALLHDVIEDSGYTYDDLVAEL--- 23868 H G+ G P+ HP+++ + V + +LHDV+ED YDD L Sbjct: 19 HAGQFDKGGAPYILHPLQLMHWARRDREALDVQI-LCVLHDVVED---CYDDREEGLRDI 74 Query: 23869 ----GVEVADIVEGLTKISGITINRETSQAEGFRKMLLSMVKDIRVILIKFCDRLHN--M 24030 G +A +V+ +TK G E + L+ + DIR + K D +N + Sbjct: 75 NTLFGSSMAQLVDNVTKRDG----------ESYECYLIRVNSDIRSVKCKRYDLRNNADL 124 Query: 24031 RTLESLPEHRRLKIALETRDIYAPLAHRFGL 24123 R L+ + + + A++ Y + ++GL Sbjct: 125 RRLKGVTP-KDTERAVKYMTAYYNMGEKWGL 154 >ref|YP_024899.1|putative helicase Length = 614 Score = 34.7 bits (78), Expect = 0.47 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +3 Query: 21486 ALTDGVLRGDRWQTLLGVTGSGKTFTVSNVIAQVDKPVLVMSHNKTLAAQL 21638 A+ D RG R + TGSGKT T + ++V + M+H + L QL Sbjct: 59 AVFDAWSRGARTVMAVSATGSGKTVTAEAIASEVQGEGVAMAHRRELVGQL 109 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 130,216,707 Number of Sequences: 14420 Number of extensions: 2812703 Number of successful extensions: 8802 Number of sequences better than 0.5: 44 Number of HSP's better than 0.5 without gapping: 5380 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8767 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 11500803569 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig46 (25,738 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046670.1|similar to Escherichia coli YedG 154 4e-37 ref|YP_164331.1|hypothetical protein 89 2e-17 ref|YP_006374.1|ORF19 82 2e-15 ref|NP_817508.1|gp59 70 1e-11 ref|NP_720296.1|Orf-232 57 1e-07 ref|NP_536389.1|conserved hypothetical protein 53 1e-06 ref|NP_945063.1|gp32 53 1e-06 ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase 50 1e-05 ref|NP_038305.1|ORF5 44 8e-04 ref|NP_695040.1|putative replication protein DnaC 41 0.005 ref|NP_862860.1|gp21 36 0.22 ref|NP_958593.1|putative putative minor tail protein 35 0.49 >ref|NP_046670.1|similar to Escherichia coli YedG Length = 224 Score = 154 bits (389), Expect = 4e-37 Identities = 88/221 (39%), Positives = 125/221 (56%), Gaps = 6/221 (2%) Frame = +2 Query: 8069 MCGRFGFFELKYFIELLRQLEIP-FEEDETYRFAPGYNIAPESSVTVLLGNHNTATLTNA 8245 MCGRF F F +++ Q I F + Y P YN+AP ++ ++ + + L Sbjct: 1 MCGRFTLFS--EFDDIIEQFNIDQFLPEGEYH--PSYNVAPSQNILTIINDGSNNRLGKL 56 Query: 8246 QWGLIPHWAKSIPKV--RPINARSESLDTKPYFRHMFRNNHCLIPASGFYEWKRTEEARK 8419 +WGLIP WAK K+ + INAR+E+L KP FR + C+IPA FYEWKR + K Sbjct: 57 RWGLIPPWAKD-EKIGYKMINARAETLSEKPSFRKPLVSKRCIIPADSFYEWKRLDPKTK 115 Query: 8420 QPYYIHRTDNRPMAFAALWDRWKPPEKNEKPIISCGIITTEANREMLSVHDRMPVILEPE 8599 P I + AFA L+++W PE N P+ +C IITT+ N M +HDRMPVIL E Sbjct: 116 IPMRIKLKSSNLFAFAGLYEKWNTPEGN--PLYTCTIITTKPNELMEDIHDRMPVILTDE 173 Query: 8600 TWKDWLEAGKTG---IENLLRPAREGTIELYPVSTLLNNPQ 8713 K+WL T +++LL+P +E Y VS+L+N+P+ Sbjct: 174 NEKEWLNPKNTDPDYLQSLLQPYDADDMEAYQVSSLVNSPK 214 >ref|YP_164331.1|hypothetical protein Length = 228 Score = 89.0 bits (219), Expect = 2e-17 Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 7/195 (3%) Frame = +2 Query: 8069 MCGRFGFFE-LKYFIELLRQ----LEIPFEEDETYRFAPGYNIAPESSVTVLLGNHNTAT 8233 MCGR + + F++ L + + E+ E Y N+AP ++VT L + Sbjct: 1 MCGRLSQYTGMHEFVDALSMPNVLVNLVGEQSERY------NVAPSTAVTTLRLEGDALV 54 Query: 8234 LTNAQWGLIPHWAKSIPKVRPINARSESLDTKPYFRHMFRNNHCLIPASGFYEWKRTEEA 8413 +WG P WA+ + PINAR E + +F +R+ L P SG++EW Sbjct: 55 AQPIRWGWRPFWARD--RAAPINARVEKVAHGRFFSAAWRHR-ALCPVSGWFEWVAEGGP 111 Query: 8414 RKQPYYIHRTDNRPMAFAALWDRWKPPEKNEKPIISCG--IITTEANREMLSVHDRMPVI 8587 RKQP++I D P+ AA+ P +++P G IIT ++ M+ +HDR PV+ Sbjct: 112 RKQPFHIQHRDGSPILCAAIGQF---PGLDDEPGEQHGFVIITADSAGGMVDIHDRRPVV 168 Query: 8588 LEPETWKDWLEAGKT 8632 L PE ++W++ T Sbjct: 169 LPPELAREWIDPATT 183 >ref|YP_006374.1|ORF19 Length = 214 Score = 82.4 bits (202), Expect = 2e-15 Identities = 49/107 (45%), Positives = 64/107 (59%) Frame = -1 Query: 18766 DLSGAILKGRNLRGADFQNANFSGAVLTDSDLSNANLRNASLDGARMSGALLIRADFQGA 18587 +L GA L G NLRGAD ++A+ GA L ++L ANL A+L GA + GA L A+ +GA Sbjct: 28 NLYGADLYGANLRGADLRDADLCGADLYGANLRGANLYGANLYGANLCGANLYGANLRGA 87 Query: 18586 RMHAVDLEGAVLDGAHLQKAELQQSILRKADCSNVDFSDADLRDCNF 18446 ++ +L GA L GA L A L+ + LR AD D DADL D F Sbjct: 88 NLYGANLRGANLYGADLYGANLRGADLRDADLCGADLRDADLPDLTF 134 Score = 75.1 bits (183), Expect = 3e-13 Identities = 45/108 (41%), Positives = 61/108 (56%) Frame = -1 Query: 18736 NLRGADFQNANFSGAVLTDSDLSNANLRNASLDGARMSGALLIRADFQGARMHAVDLEGA 18557 NL GAD AN GA L D+DL A+L A+L GA + GA L A+ GA ++ +L GA Sbjct: 28 NLYGADLYGANLRGADLRDADLCGADLYGANLRGANLYGANLYGANLCGANLYGANLRGA 87 Query: 18556 VLDGAHLQKAELQQSILRKADCSNVDFSDADLRDCNFREASLANATLI 18413 L GA+L+ A L + L A+ D DADL + R+A L + T + Sbjct: 88 NLYGANLRGANLYGADLYGANLRGADLRDADLCGADLRDADLPDLTFV 135 Score = 63.9 bits (154), Expect = 8e-10 Identities = 44/105 (41%), Positives = 58/105 (55%) Frame = -1 Query: 18700 SGAVLTDSDLSNANLRNASLDGARMSGALLIRADFQGARMHAVDLEGAVLDGAHLQKAEL 18521 S A L +DL ANLR A L A + GA L A+ +GA ++ +L GA L GA+L A L Sbjct: 25 SRANLYGADLYGANLRGADLRDADLCGADLYGANLRGANLYGANLYGANLCGANLYGANL 84 Query: 18520 QQSILRKADCSNVDFSDADLRDCNFREASLANATLIGADLQAAYL 18386 + + L A+ + ADL N R A L +A L GADL+ A L Sbjct: 85 RGANLYGANLRGANLYGADLYGANLRGADLRDADLCGADLRDADL 129 Score = 43.5 bits (101), Expect = 0.001 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 9/108 (8%) Frame = -1 Query: 18151 VRNAASTANIW---------RKAEIQSAVLYDRKQYEQLKRNVFDWNKTRKQNSAMRVTL 17999 +R + S AN++ R A+++ A L Y R + + L Sbjct: 20 MRESGSRANLYGADLYGANLRGADLRDADLCGADLYGANLRGANLYGANLYGANLCGANL 79 Query: 17998 HGADFDHKNLSYADLAGADLAASTFKGADLEESDLRKADLSGCDFREA 17855 +GA+ NL A+L GA+L + GA+L +DLR ADL G D R+A Sbjct: 80 YGANLRGANLYGANLRGANLYGADLYGANLRGADLRDADLCGADLRDA 127 Score = 42.7 bits (99), Expect = 0.002 Identities = 28/75 (37%), Positives = 38/75 (50%) Frame = -1 Query: 17968 SYADLAGADLAASTFKGADLEESDLRKADLSGCDFREASXXXXXXXXXXXXXANFWRANL 17789 S A+L GADL + +GADL ++DL ADL G + R A+ AN + ANL Sbjct: 25 SRANLYGADLYGANLRGADLRDADLCGADLYGANLRGANLYGANLYGANLCGANLYGANL 84 Query: 17788 DRIRLDGAVVSAATV 17744 L GA + A + Sbjct: 85 RGANLYGANLRGANL 99 Score = 42.0 bits (97), Expect = 0.003 Identities = 34/97 (35%), Positives = 44/97 (45%) Frame = -1 Query: 18034 TRKQNSAMRVTLHGADFDHKNLSYADLAGADLAASTFKGADLEESDLRKADLSGCDFREA 17855 T + S R L+GAD NL ADL ADL GADL ++LR A+L G + A Sbjct: 18 TSMRESGSRANLYGADLYGANLRGADLRDADLC-----GADLYGANLRGANLYGANLYGA 72 Query: 17854 SXXXXXXXXXXXXXANFWRANLDRIRLDGAVVSAATV 17744 + AN + ANL L GA + A + Sbjct: 73 NLCGANLYGANLRGANLYGANLRGANLYGADLYGANL 109 Score = 38.9 bits (89), Expect = 0.026 Identities = 28/82 (34%), Positives = 36/82 (43%) Frame = -1 Query: 18544 AHLQKAELQQSILRKADCSNVDFSDADLRDCNFREASLANATLIGADLQAAYLWRANFSR 18365 A+L A+L + LR AD + D ADL N R A L GA+L A L AN Sbjct: 27 ANLYGADLYGANLRGADLRDADLCGADLYGANLR-----GANLYGANLYGANLCGANLYG 81 Query: 18364 VKLRGVRVSDATILDTGRYATE 18299 LRG + A + Y + Sbjct: 82 ANLRGANLYGANLRGANLYGAD 103 Score = 38.9 bits (89), Expect = 0.026 Identities = 21/45 (46%), Positives = 27/45 (60%) Frame = -1 Query: 18001 LHGADFDHKNLSYADLAGADLAASTFKGADLEESDLRKADLSGCD 17867 L GA+ NL A+L GADL + +GADL ++DL ADL D Sbjct: 84 LRGANLYGANLRGANLYGADLYGANLRGADLRDADLCGADLRDAD 128 Score = 36.6 bits (83), Expect = 0.13 Identities = 21/46 (45%), Positives = 27/46 (58%) Frame = -1 Query: 18001 LHGADFDHKNLSYADLAGADLAASTFKGADLEESDLRKADLSGCDF 17864 L+GA+ NL ADL GA+L + + ADL +DLR ADL F Sbjct: 89 LYGANLRGANLYGADLYGANLRGADLRDADLCGADLRDADLPDLTF 134 Score = 35.8 bits (81), Expect = 0.22 Identities = 28/89 (31%), Positives = 42/89 (47%) Frame = -1 Query: 18001 LHGADFDHKNLSYADLAGADLAASTFKGADLEESDLRKADLSGCDFREASXXXXXXXXXX 17822 L GAD +L ADL GA+L + GA+L ++L A+L G + R A+ Sbjct: 39 LRGADLRDADLCGADLYGANLRGANLYGANLYGANLCGANLYGANLRGANLYGANLRGAN 98 Query: 17821 XXXANFWRANLDRIRLDGAVVSAATVLDS 17735 A+ + ANL L A + A + D+ Sbjct: 99 LYGADLYGANLRGADLRDADLCGADLRDA 127 >ref|NP_817508.1|gp59 Length = 281 Score = 70.1 bits (170), Expect = 1e-11 Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 5/131 (3%) Frame = -1 Query: 18757 GAILKGRNLRGADFQNANFSGAVLTDSDLSNANLRNASLDGARMSGALLIRADFQ----- 18593 G L+ +LRGAD +A +G L+ + L+NANL A+L A ++GA L AD Sbjct: 32 GISLQRADLRGADLSHAYLAGVNLSRAKLNNANLSRAALQDANLNGACLTGADLTYAGAI 91 Query: 18592 GARMHAVDLEGAVLDGAHLQKAELQQSILRKADCSNVDFSDADLRDCNFREASLANATLI 18413 A + +L A L A LQ A L + L A+ S +F DA+L + EA+ ANA+ Sbjct: 92 SASLVDANLVRANLSSAALQSANLAYARLFGANLSRANFDDANLVHASLIEANAANASFE 151 Query: 18412 GADLQAAYLWR 18380 GA+L+ A L R Sbjct: 152 GANLRHAELER 162 Score = 54.3 bits (129), Expect = 6e-07 Identities = 37/110 (33%), Positives = 55/110 (50%) Frame = -1 Query: 18649 ASLDGARMSGALLIRADFQGARMHAVDLEGAVLDGAHLQKAELQQSILRKADCSNVDFSD 18470 A+++ A G L RAD +GA + L G L A L A L ++ L+ A+ + + Sbjct: 23 AAVEDAASRGISLQRADLRGADLSHAYLAGVNLSRAKLNNANLSRAALQDANLNGACLTG 82 Query: 18469 ADLRDCNFREASLANATLIGADLQAAYLWRANFSRVKLRGVRVSDATILD 18320 ADL ASL +A L+ A+L +A L AN + +L G +S A D Sbjct: 83 ADLTYAGAISASLVDANLVRANLSSAALQSANLAYARLFGANLSRANFDD 132 Score = 46.6 bits (109), Expect = 1e-04 Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 10/93 (10%) Frame = -1 Query: 18763 LSGAILKGRNLRGADFQNANFSGAVLTDSDLSNANLRNASLDG-----ARMSGALLIRAD 18599 L A L G L GAD A A L D++L ANL +A+L AR+ GA L RA+ Sbjct: 70 LQDANLNGACLTGADLTYAGAISASLVDANLVRANLSSAALQSANLAYARLFGANLSRAN 129 Query: 18598 FQGARM-HAVDLE----GAVLDGAHLQKAELQQ 18515 F A + HA +E A +GA+L+ AEL++ Sbjct: 130 FDDANLVHASLIEANAANASFEGANLRHAELER 162 Score = 41.6 bits (96), Expect = 0.004 Identities = 59/201 (29%), Positives = 82/201 (40%) Frame = -1 Query: 18490 SNVDFSDADLRDCNFREASLANATLIGADLQAAYLWRANFSRVKLRGVRVSDATILDTGR 18311 S D A + D R SL A L GADL AYL N SR KL +S A + D Sbjct: 16 SRFDGLRAAVEDAASRGISLQRADLRGADLSHAYLAGVNLSRAKLNNANLSRAALQD--- 72 Query: 18310 YATEEWARDRQAVFLSASPSVDPLKASSDASSAAVEGGSKNARSQGRSSPAHLVRNAAST 18131 A A + L + S++ V+ A+LVR Sbjct: 73 -----------ANLNGACLTGADLTYAGAISASLVD--------------ANLVR----- 102 Query: 18130 ANIWRKAEIQSAVLYDRKQYEQLKRNVFDWNKTRKQNSAMRVTLHGADFDHKNLSYADLA 17951 AN+ A +QSA L Y +L F N +R A+FD NL +A L Sbjct: 103 ANL-SSAALQSANL----AYARL----FGANLSR------------ANFDDANLVHASLI 141 Query: 17950 GADLAASTFKGADLEESDLRK 17888 A+ A ++F+GA+L ++L + Sbjct: 142 EANAANASFEGANLRHAELER 162 >ref|NP_720296.1|Orf-232 Length = 232 Score = 56.6 bits (135), Expect = 1e-07 Identities = 36/80 (45%), Positives = 44/80 (55%) Frame = -1 Query: 18760 SGAILKGRNLRGADFQNANFSGAVLTDSDLSNANLRNASLDGARMSGALLIRADFQGARM 18581 S A L G NLRGAD + A+ GA L +DL A+LR A L G + G AD G + Sbjct: 73 SRADLCGTNLRGADLRGADLRGADLRGADLRGADLRGADLCGTNLRG-----ADLCGTNL 127 Query: 18580 HAVDLEGAVLDGAHLQKAEL 18521 DL GA L GA+L A+L Sbjct: 128 RGADLRGADLRGANLCDADL 147 Score = 55.5 bits (132), Expect = 3e-07 Identities = 31/67 (46%), Positives = 40/67 (59%) Frame = -1 Query: 18766 DLSGAILKGRNLRGADFQNANFSGAVLTDSDLSNANLRNASLDGARMSGALLIRADFQGA 18587 +L GA L+G +LRGAD + A+ GA L +DL NLR A L G + GA L AD +GA Sbjct: 81 NLRGADLRGADLRGADLRGADLRGADLRGADLCGTNLRGADLCGTNLRGADLRGADLRGA 140 Query: 18586 RMHAVDL 18566 + DL Sbjct: 141 NLCDADL 147 Score = 48.9 bits (115), Expect = 3e-05 Identities = 42/120 (35%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Frame = -1 Query: 18661 NLRNASLDGARMSGAL------LIRADFQGARMHAVDLEGAVLDGAHLQKAELQQSILRK 18500 NLRN +++ A +S L + G+R DL G L GA L+ A+L+ + LR Sbjct: 43 NLRNNNMNSADLSKILEEHKVWITSMRESGSR---ADLCGTNLRGADLRGADLRGADLRG 99 Query: 18499 ADCSNVDFSDADLRDCNFREASLANATLIGADLQAAYLWRANFSRVKLRGVRVSDATILD 18320 AD D ADL N R A L L GADL+ A LRG + DA + D Sbjct: 100 ADLRGADLRGADLCGTNLRGADLCGTNLRGADLRGA----------DLRGANLCDADLPD 149 Score = 46.2 bits (108), Expect = 2e-04 Identities = 25/50 (50%), Positives = 31/50 (62%) Frame = -1 Query: 18001 LHGADFDHKNLSYADLAGADLAASTFKGADLEESDLRKADLSGCDFREAS 17852 L GAD +L ADL GADL + +GADL ++LR ADL G D R A+ Sbjct: 92 LRGADLRGADLRGADLRGADLCGTNLRGADLCGTNLRGADLRGADLRGAN 141 Score = 45.4 bits (106), Expect = 3e-04 Identities = 26/55 (47%), Positives = 33/55 (60%) Frame = -1 Query: 18019 SAMRVTLHGADFDHKNLSYADLAGADLAASTFKGADLEESDLRKADLSGCDFREA 17855 ++MR + AD NL ADL GADL + +GADL +DLR ADL G + R A Sbjct: 66 TSMRESGSRADLCGTNLRGADLRGADLRGADLRGADLRGADLRGADLCGTNLRGA 120 Score = 42.7 bits (99), Expect = 0.002 Identities = 24/49 (48%), Positives = 30/49 (61%) Frame = -1 Query: 18001 LHGADFDHKNLSYADLAGADLAASTFKGADLEESDLRKADLSGCDFREA 17855 L GAD +L ADL GADL + +GADL ++LR ADL G + R A Sbjct: 82 LRGADLRGADLRGADLRGADLRGADLRGADLCGTNLRGADLCGTNLRGA 130 Score = 41.2 bits (95), Expect = 0.005 Identities = 28/77 (36%), Positives = 35/77 (45%) Frame = -1 Query: 17968 SYADLAGADLAASTFKGADLEESDLRKADLSGCDFREASXXXXXXXXXXXXXANFWRANL 17789 S ADL G +L + +GADL +DLR ADL G D R A N A+L Sbjct: 73 SRADLCGTNLRGADLRGADLRGADLRGADLRGADLRGADLCGTNLRGADLCGTNLRGADL 132 Query: 17788 DRIRLDGAVVSAATVLD 17738 L GA + A + D Sbjct: 133 RGADLRGANLCDADLPD 149 Score = 38.5 bits (88), Expect = 0.034 Identities = 20/45 (44%), Positives = 26/45 (57%) Frame = -1 Query: 18001 LHGADFDHKNLSYADLAGADLAASTFKGADLEESDLRKADLSGCD 17867 L GAD +L +L GADL + +GADL +DLR A+L D Sbjct: 102 LRGADLRGADLCGTNLRGADLCGTNLRGADLRGADLRGANLCDAD 146 Score = 36.2 bits (82), Expect = 0.17 Identities = 20/46 (43%), Positives = 25/46 (54%) Frame = -1 Query: 18001 LHGADFDHKNLSYADLAGADLAASTFKGADLEESDLRKADLSGCDF 17864 L GAD NL ADL G +L + +GADL ++L ADL F Sbjct: 107 LRGADLCGTNLRGADLCGTNLRGADLRGADLRGANLCDADLPDLTF 152 >ref|NP_536389.1|conserved hypothetical protein Length = 223 Score = 53.1 bits (126), Expect = 1e-06 Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 11/158 (6%) Frame = +2 Query: 8270 AKSIPKVRPI-----NARSESLDTKPYFRHMFR-NNHCLIPASGFYEWKRTEEARKQPYY 8431 AK+ K PI N R ++L P + +R CLIPA YE E R + Sbjct: 72 AKAEGKAPPIMRSTMNVRDDNLGQSPLYGPAWRAGRRCLIPARWIYE-PCYETGRNVWHR 130 Query: 8432 IHRTDNRPMAFAALWDRWKPPEKNEKPIISCGIITTEANREMLSVHD-----RMPVILEP 8596 I TD RP A +W K + E ++ + E + M +H R VIL P Sbjct: 131 IGLTDWRPYCVAGIWRTLKSEDGRETHTMAMITVNAEGDPIMSRMHKPGDEKRSVVILRP 190 Query: 8597 ETWKDWLEAGKTGIENLLRPAREGTIELYPVSTLLNNP 8710 + W++WL A ++LYP ++ P Sbjct: 191 DDWEEWLTTSNA-------EAARAMLQLYPAGDMVAAP 221 >ref|NP_945063.1|gp32 Length = 223 Score = 53.1 bits (126), Expect = 1e-06 Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 11/158 (6%) Frame = +2 Query: 8270 AKSIPKVRPI-----NARSESLDTKPYFRHMFR-NNHCLIPASGFYEWKRTEEARKQPYY 8431 AK+ K PI N R ++L P + +R CLIPA YE E R + Sbjct: 72 AKAEGKAPPIMRSTMNVRDDNLGQSPLYGPAWRAGRRCLIPARWIYE-PCYETGRNVWHR 130 Query: 8432 IHRTDNRPMAFAALWDRWKPPEKNEKPIISCGIITTEANREMLSVHD-----RMPVILEP 8596 I TD RP A +W K + E ++ + E + M +H R VIL P Sbjct: 131 IGLTDWRPYCVAGIWRTLKSEDGRETHTMAMITVNAEGDPIMSRMHKPGDEKRSVVILRP 190 Query: 8597 ETWKDWLEAGKTGIENLLRPAREGTIELYPVSTLLNNP 8710 + W++WL A ++LYP ++ P Sbjct: 191 DDWEEWLTTSNA-------EAARAMLQLYPAGDMVAAP 221 >ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase Length = 327 Score = 50.1 bits (118), Expect = 1e-05 Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 6/102 (5%) Frame = -1 Query: 17608 VTVTIPLYNNVRFIAQTIDSVLAQTF--TDFELLIYDDHSTDG--SFEIAASYSD--RRI 17447 V+V +P +NN + +TI SVL QT TD+EL+I DDHS D + + Y R Sbjct: 4 VSVIMPTFNNGEKLHRTISSVLNQTMKSTDYELIIIDDHSNDNGETLNVIKKYKGLVRFK 63 Query: 17446 RLVRNPVNLGPERNWNKAIGEVRGKYVKLVCGDDILYPDCLE 17321 +L +N N RN + + +YV + DD+L+ LE Sbjct: 64 QLKKNSGNASVPRNTGLKMS--KAEYVFFLDSDDLLHERALE 103 >ref|NP_038305.1|ORF5 Length = 260 Score = 43.9 bits (102), Expect = 8e-04 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 5/121 (4%) Frame = +3 Query: 6975 NYNLILIGPSGTGKSYLAGGLCHEALK-LGYHALFRTMDELIQTI----RFKDVTTAAAR 7139 +YN++LIG +G GKS+LA + ALK L H + M I + + K+ A Sbjct: 119 DYNIVLIGNTGVGKSHLA----YSALKALSDHT--KKMGVFINVVDLLAKIKEDFNLEAE 172 Query: 7140 EYKRLVHAHLLVIDDIMMFPLEKSVAVGLFQLINQLHEQTSFIITTNKNPKEWAEMLGDE 7319 +R+ A LV+DD+ EK L + L+++T IITTN +P++ G Sbjct: 173 YIRRISEAEWLVLDDL---GTEKVTEWSSGILYSILNKRTKTIITTNLSPQDILGTYGKR 229 Query: 7320 V 7322 V Sbjct: 230 V 230 >ref|NP_695040.1|putative replication protein DnaC Length = 296 Score = 41.2 bits (95), Expect = 0.005 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 5/110 (4%) Frame = +3 Query: 6981 NLILIGPSGTGKSYLAGGLCHEALK-LGYHALFRTMDELIQTIR--FKDVTTAAAREYKR 7151 N ++ GP+GTGKS+LA + + L+ +F + E++ I+ F + + + EY Sbjct: 153 NTVVSGPAGTGKSHLAMSILKDCLQHTDLTVIFASWSEVLHLIKDSFDNKDSFYSTEYFM 212 Query: 7152 LV--HAHLLVIDDIMMFPLEKSVAVGLFQLINQLHEQTSFIITTNKNPKE 7295 V + LLVIDDI EK + L L +T IITTN E Sbjct: 213 EVFRNTDLLVIDDI---GSEKITEWSMSLLTEVLDARTKTIITTNLKSDE 259 >ref|NP_862860.1|gp21 Length = 256 Score = 35.8 bits (81), Expect = 0.22 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 3/114 (2%) Frame = +3 Query: 6981 NLILIGPSGTGKSYLAGGLCHEALKLGYH-ALFRTMDELIQTIRFKDVTTAAAREY--KR 7151 N++ G +GTGKS+LA + + A+F + +L+ I+ + E+ + Sbjct: 120 NIVFQGEAGTGKSHLAFAMMKYLSETTKEIAIFINVTDLLMKIK----ADFSQEEFLVNK 175 Query: 7152 LVHAHLLVIDDIMMFPLEKSVAVGLFQLINQLHEQTSFIITTNKNPKEWAEMLG 7313 + A LV+DD+ M EK L N L+++ + +ITTN +E + G Sbjct: 176 IASAKFLVLDDLGM---EKDSEWSFSILYNILNKRANTVITTNLTAQEIQKRYG 226 >ref|NP_958593.1|putative putative minor tail protein Length = 2021 Score = 34.7 bits (78), Expect = 0.49 Identities = 46/248 (18%), Positives = 107/248 (43%), Gaps = 8/248 (3%) Frame = -1 Query: 10555 LRVVERELRSQVDELKAKTGELDILKV-----IRARLESDLDHERSNALEKIALLQQS-- 10397 L +E R+ ++ K EL L V ++ +++++LD + + E + ++ Sbjct: 3 LEELELRFRANYGDVIQKIDELTNLIVQKTGDMQYKMQNNLDKFQQSMNESTSRANENVK 62 Query: 10396 -ELRLKTEFEHLAGRILEERGSSLGEENRVRMASLLQPLKEQLDAFRTRVDEVHRNDTEI 10220 E+ ++E E ++LE+ +L +N V ++Q KEQ ++ + V++ ++ + Sbjct: 63 EEIHQRSEAEEAKQKLLEQ---TLNTQNEVT-DKIVQGNKEQAESSKEAVNQSEKSLDSL 118 Query: 10219 SARLIEQVRQLQELSGQVSREANLLARAIKGESKAQGDWGELIIERIFEASGLEKGREYT 10040 +ARL E Q ++ Q S +++ + +S+ Q ++ +++ + Sbjct: 119 TARLQEASNMQQRIAQQTSTAHDVIKDISRPKSQTQ-------VKEPLKSTSQNDYSSFD 171 Query: 10039 VQESFRMEDGTLKRPDFMVLLPGEKAVIVDSKVSLTAYERYCSLDDVARREQALREHVQS 9860 + R++ KRP + +D ++ A +D + E +S Sbjct: 172 NYQEKRIQSYMPKRP---------VDLGIDDEIQAEASRAKKEVDSLVTHINEKMEQARS 222 Query: 9859 VRRHIAGL 9836 ++R IA L Sbjct: 223 MQRRIATL 230 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 131,298,701 Number of Sequences: 14420 Number of extensions: 2759453 Number of successful extensions: 8315 Number of sequences better than 0.5: 12 Number of HSP's better than 0.5 without gapping: 5144 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8251 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 11889828186 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig47 (24,426 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_803670.1|ORF104 86 2e-16 ref|NP_817387.1|gp49 83 1e-15 ref|NP_851959.1|hypothetical protein 79 2e-14 ref|YP_025041.1|putative transposase B 66 1e-10 ref|NP_536395.1|ISBt3 transposase subunit protein 59 3e-08 ref|NP_859396.1|hypothetical protein 56 2e-07 ref|NP_039721.1|predicted 17.2Kd protein 55 3e-07 ref|NP_046873.1|gp57 52 3e-06 ref|YP_024980.1|major tail subunit 52 4e-06 ref|NP_958229.1|gene 55 protein 48 5e-05 ref|NP_818208.1|gp135 46 2e-04 ref|NP_944342.1|gp33 46 2e-04 ref|YP_024421.1|Hypothetical protein 42 0.003 ref|NP_958559.1|putative protein 42 0.003 ref|NP_944801.1|unknown 42 0.004 ref|NP_795389.1|hypothetical protein 41 0.005 ref|NP_851958.1|hypothetical protein 41 0.007 ref|NP_817811.1|gp50 41 0.007 ref|NP_817998.1|gp25 41 0.007 ref|NP_039696.1|predicted 21.3kd protein 39 0.019 ref|YP_077230.1|Hypothetical protein 39 0.025 ref|NP_542581.1|hypothetical protein 39 0.025 ref|NP_963976.1|ORF B494 39 0.032 ref|NP_817477.1|gp27 37 0.072 ref|YP_195257.1|virion structural protein 37 0.072 ref|YP_006904.1|Hypothetical protein 37 0.094 ref|YP_195258.1|hypothetical protein 37 0.094 ref|NP_075300.1|gp33 37 0.12 ref|NP_542568.1|putative methyltransferase-endonuclease 37 0.12 ref|YP_164385.1|cro 37 0.12 ref|NP_817647.1|gp58 35 0.36 ref|YP_164671.1|orf36 35 0.47 >ref|NP_803670.1|ORF104 Length = 162 Score = 85.5 bits (210), Expect = 2e-16 Identities = 52/142 (36%), Positives = 78/142 (54%), Gaps = 9/142 (6%) Frame = -1 Query: 2265 VFLITINPVGVMGKGIALQFKHAFPENFKAYADAVNRKQIRTGEVQVVPVSSLNGVRYII 2086 ++LIT+N VGVMG G+A FK +PE F+ Y ++ I G + S +G R+++ Sbjct: 17 LYLITVNVVGVMGAGLAKSFKEKYPELFERYKHDCKKRIITIGNPVIYKAS--DGKRFMM 74 Query: 2085 TFPTRNHWRYPSKPEWITAGLRDLRKKIED---------YQIESIAIPPLGFGNGGLDWS 1933 FPT+++WR PS+ +I GL + + + D + I IPPLG NGGLD+S Sbjct: 75 -FPTKDNWRNPSQISFIERGLEWMMENVSDSAENEEDCIHPDWKIIIPPLGCANGGLDFS 133 Query: 1932 VVKAEIESALQGLPVEIQVYEP 1867 V+ IE +P +I V P Sbjct: 134 DVRTIIEDWSNHMPNQIVVVYP 155 >ref|NP_817387.1|gp49 Length = 288 Score = 83.2 bits (204), Expect = 1e-15 Identities = 46/103 (44%), Positives = 60/103 (58%) Frame = +2 Query: 6191 EGGVEYWLARDLQYLLGYSKWDNFLNVVSKAKTACEISGHNVADHFADVGKMVDLGSGSQ 6370 +GG + W AR L +GYS W F ++ +AKTA G NV F K +G + Sbjct: 22 QGGEDRWSARWLMEQMGYSSWQKFEPIIERAKTAAASEGFNVRTLFTQTVKK----TGGR 77 Query: 6371 REVDDIMLTRYACYLIAQNGDSRKQEIAFAQTYFAIQTRRAEV 6499 E D +TR+A YLIA NG K E+A AQTYFA++TR+AEV Sbjct: 78 PETD-YHVTRFAAYLIAMNGQPSKPEVAAAQTYFAVKTRQAEV 119 >ref|NP_851959.1|hypothetical protein Length = 95 Score = 79.0 bits (193), Expect = 2e-14 Identities = 34/90 (37%), Positives = 55/90 (61%) Frame = -1 Query: 22191 MVIIKKSALNSFGAKYPDAIPALNEWYARVKAADWQNHADLKTMFLSADYIANERYVFNI 22012 M ++ L+SF K+ A AL+ WY V +W+ D++ F SAD++ N R +FNI Sbjct: 1 MKVLNVEKLHSFSRKHNQAKGALDSWYDEVIRENWKTTQDIRNRFNSADFLPNNRVIFNI 60 Query: 22011 KGNHYRIVARIRFSSRTVFIKFIGTHKSYD 21922 KGN+YR+V ++ + + V ++ +GTH YD Sbjct: 61 KGNNYRLVVQVVYQAGMVIVERVGTHAEYD 90 >ref|YP_025041.1|putative transposase B Length = 280 Score = 66.2 bits (160), Expect = 1e-10 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 3/160 (1%) Frame = +3 Query: 23283 TGPNQVYTWDITYMGRTIRGLFYYAYVVTDIFDKSIVGWAVHAEESEAHSRALFERILKG 23462 TG NQ +T D+TY+ +T R + Y + D+ + I+G++ + E +K Sbjct: 111 TGLNQKWTADMTYI-QTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKN 169 Query: 23463 RRI-GLKALHADNGHPMKGVSLMALLIDLKVAVSHSRPRTSNDNPYIESLFKTMKYHVTY 23639 R I G +H D G L +L + S+SR DN +ES ++K Y Sbjct: 170 RTITGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVY 229 Query: 23640 P-KAFETLEDARQWMGEFVN-WYNTEHKHSSIGYVTPHQM 23753 P FE E A + E+V+ +YN + HSS+GY TP Q+ Sbjct: 230 PVPVFEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQV 269 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 58.5 bits (140), Expect = 3e-08 Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 6/162 (3%) Frame = +3 Query: 23277 RATGPNQVYTWDITYMGRTIRGLFYYAYVVTDIFDKSIVGWAVHAEESEAHSRALFERIL 23456 +A PNQ++ D TY+ T +G Y A+V+ D+F + IVGW V + + E+ L Sbjct: 106 KADRPNQLWVSDFTYVS-TWQGWLYVAFVI-DVFARRIVGWRVSSSMTTDFVLDALEQAL 163 Query: 23457 KGRRIGLKAL---HADNGHPMKGVSLMALLIDLKVAVSHSRPRTSNDNPYIES---LFKT 23618 R+ G H+D G + L + + S S DN E+ L+KT Sbjct: 164 YARQPGEDGTLIHHSDRGSQYVSIRYSERLAEAGIEPSVGSRGDSYDNALAETINGLYKT 223 Query: 23619 MKYHVTYPKAFETLEDARQWMGEFVNWYNTEHKHSSIGYVTP 23744 H P ++T E E+V WYN +GY+ P Sbjct: 224 ELIHRRAP--WKTRESVELATLEWVAWYNHHRLMEPLGYIPP 263 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 55.8 bits (133), Expect = 2e-07 Identities = 40/155 (25%), Positives = 66/155 (42%) Frame = +3 Query: 23280 ATGPNQVYTWDITYMGRTIRGLFYYAYVVTDIFDKSIVGWAVHAEESEAHSRALFERILK 23459 A P+Q++ D TY+ T +G Y A+++ D+F IVGW V + E+ L Sbjct: 126 AERPDQLWVADFTYVS-TWQGFVYVAFII-DVFAGYIVGWRVSSSMETTFVLDALEQALW 183 Query: 23460 GRRIGLKALHADNGHPMKGVSLMALLIDLKVAVSHSRPRTSNDNPYIESLFKTMKYHVTY 23639 RR H+D G ++ L + + S S DN ES+ K V + Sbjct: 184 ARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIH 243 Query: 23640 PKAFETLEDARQWMGEFVNWYNTEHKHSSIGYVTP 23744 K+++ + +V+WYN +G+ P Sbjct: 244 RKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPP 278 >ref|NP_039721.1|predicted 17.2Kd protein Length = 152 Score = 55.5 bits (132), Expect = 3e-07 Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Frame = +1 Query: 8935 KFLNLRGITKPLFNADRLKSLPAGQTVHLCEGVPDVVSLESKGLIALGVLGATSFRTEWV 9114 K+L++ G L+N L + + +CEG D ++ E GL +G+ GA ++ + Sbjct: 35 KYLSMPGEKDRLYNTYALTKY--SKDMAICEGELDTITAELCGLPTVGLSGAQKWKPYFR 92 Query: 9115 DRFLKFKVV-VLGDGDEGGAKFAKDISKYFIDRGKPVQCMTLPKGKDVSDVLAQDGSA 9285 + FL ++ V +L DGD+ G +FA+ ++K + + + +P+G+DV+ ++ G A Sbjct: 93 ELFLGYRNVNILADGDDAGMEFARSVAKTLPN----ARIIPMPEGEDVNSLVTSQGKA 146 >ref|NP_046873.1|gp57 Length = 152 Score = 52.0 bits (123), Expect = 3e-06 Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Frame = +1 Query: 8929 KAKFLNLRGITKPLFNADRLKSLPAGQTVHLCEGVPDVVSLESKGLIALGVLGATSFRTE 9108 K K++ + G L+N L + + + EG D ++ E G+ +GV GA ++ Sbjct: 33 KPKYMTMPGDKPRLYNTVALTRY--SRDMAITEGEIDAITAELCGIPTVGVPGAQMWKPH 90 Query: 9109 WVDRFLKFKVV-VLGDGDEGGAKFAKDISKYFIDRGKPVQCMTLPKGKDVSDVLAQDG 9279 + + FL ++ V +L DGDE G +FAK ++K + + + +P+G+DV+ ++ G Sbjct: 91 FRELFLGYRNVNILADGDEPGMEFAKSVAKTLPN----ARIIPMPEGEDVNSLVTSQG 144 >ref|YP_024980.1|major tail subunit Length = 743 Score = 51.6 bits (122), Expect = 4e-06 Identities = 68/238 (28%), Positives = 91/238 (38%), Gaps = 28/238 (11%) Frame = +2 Query: 16412 HRSPEVVAKDSQRDAYLRSLGYT-VIRFENQLVLNNPAEF-LNQIKTALQLPSTAGRGAG 16585 +R+ VV +S D+ S T V F +Q A F L+ T +Q+ G G G Sbjct: 453 NRTVSVVGTNSVGDSVPASASLTPVSNFISQSTFTTNAAFTLHPDCTFVQVQGCGGGGGG 512 Query: 16586 GEGNTPGPKVI-----GAALTYPSTTGRGAGGEGNTPVPNEIGESLTYPSTTGRGAGGEG 16750 G G+ G ++ G A + GG+ T V G TT G GG Sbjct: 513 GSGDAIGTELTGGGGGGGAALVSVLSSNAIGGQTATIVIGGGGAGAPNVGTTFGGNGGNT 572 Query: 16751 NTPGPKVIGESLT--------YPST-TGRGA-GGEGNIPVPNEIGESLTYPSTTGRGAGG 16900 + G +IG S T Y S +G GA GG G N G + S G G G Sbjct: 573 SVSGAGIIGLSWTGGKGGRSGYRSDGSGNGAFGGAGGNNSANTGGGAGGVSSNGGNGVNG 632 Query: 16901 EGNTPGPKVIGELLTY------PSTTGRGAGGEGNTPGPNGIG-----VFWQTQGSGK 17041 G G +L+ S G G G G T GP+G G V+W +G+ Sbjct: 633 GGGGGGSN--NDLVLRRGGNGGGSNGGIGGQGVGTTDGPSGGGGGNSAVWWDNADAGR 688 Score = 36.6 bits (83), Expect = 0.12 Identities = 49/175 (28%), Positives = 63/175 (36%), Gaps = 21/175 (12%) Frame = +2 Query: 16583 GGEGNTPGPKVIGAALTYPSTTGRGAGGEGN------TPVPNEIGESL------------ 16708 GG T P +G T S G + G+ TPV N I +S Sbjct: 439 GGTTYTSPPTAVGQNRTV-SVVGTNSVGDSVPASASLTPVSNFISQSTFTTNAAFTLHPD 497 Query: 16709 -TYPSTTGRGAGGEGNTPGPKVIGESLTYPSTTGRGAGGEGNIPV--PNEIGESLTYPST 16879 T+ G G GG G + G+++ T G G GG + V N IG +T Sbjct: 498 CTFVQVQGCGGGGGGGS------GDAIGTELTGGGGGGGAALVSVLSSNAIGGQT---AT 548 Query: 16880 TGRGAGGEGNTPGPKVIGELLTYPSTTGRGAGGEGNTPGPNGIGVFWQTQGSGKS 17044 G GG G P V TT G GG + G IG+ W G+S Sbjct: 549 IVIGGGGAG---APNV--------GTTFGGNGGNTSVSGAGIIGLSWTGGKGGRS 592 Score = 34.7 bits (78), Expect = 0.47 Identities = 44/164 (26%), Positives = 58/164 (35%), Gaps = 1/164 (0%) Frame = +2 Query: 16568 AGRGA-GGEGNTPGPKVIGAALTYPSTTGRGAGGEGNTPVPNEIGESLTYPSTTGRGAGG 16744 +G GA GG G G A S G G G G G RG G Sbjct: 599 SGNGAFGGAGGNNSANTGGGAGGVSSNGGNGVNGGGG-------GGGSNNDLVLRRGGNG 651 Query: 16745 EGNTPGPKVIGESLTYPSTTGRGAGGEGNIPVPNEIGESLTYPSTTGRGAGGEGNTPGPK 16924 G+ G + G+ + +T G GG GN V + ++ GRG G G + Sbjct: 652 GGSNGG--IGGQGVG--TTDGPSGGGGGNSAVWWDNADA-------GRGGNGVTGNSGNQ 700 Query: 16925 VIGELLTYPSTTGRGAGGEGNTPGPNGIGVFWQTQGSGKSFSMV 17056 G TG G GG G G G+ F G+G ++ Sbjct: 701 TGGH------ATGNGNGGGG---GGGGVPDFGGAGGNGSGGKVI 735 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 47.8 bits (112), Expect = 5e-05 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 2/158 (1%) Frame = +3 Query: 23283 TGPNQVYTWDITYMGRTIRGLFYYAYVVTDIFDKSIVGWAVHAEESEAHSRALFERILKG 23462 T PNQV+ D+TY+ R + Y VV D+F + VGWA+ + E + Sbjct: 135 TEPNQVWCGDVTYIWTGKR--WAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWET 192 Query: 23463 R-RIGLKALHADNGHPMKGVSLMALLIDLKVAVSHSRPRTSNDNPYIESLFKTMKYHVTY 23639 R + G H+D G LL ++ S SR DN +E F+++K Sbjct: 193 RGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMP 252 Query: 23640 PKAFETLEDARQWMGEF-VNWYNTEHKHSSIGYVTPHQ 23750 + + +A + ++ V +Y+ H G + P++ Sbjct: 253 VVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNE 290 >ref|NP_818208.1|gp135 Length = 251 Score = 46.2 bits (108), Expect = 2e-04 Identities = 48/147 (32%), Positives = 55/147 (37%), Gaps = 4/147 (2%) Frame = +2 Query: 16577 GAGGEGNTPGPKVIGAALTYPS--TTGRGAGGEGNTPVPN--EIGESLTYPSTTGRGAGG 16744 G+GG G T V G PS G GG G P N + G S ST G G GG Sbjct: 119 GSGGNGGTAS--VSGLPFEVPSGILVSGGKGGNGGAPGNNAGQAGSS----STNGAGGGG 172 Query: 16745 EGNTPGPKVIGESLTYPSTTGRGAGGEGNIPVPNEIGESLTYPSTTGRGAGGEGNTPGPK 16924 G G S + ST G G G G+ N G + G G G + G Sbjct: 173 GGG-------GGSRSSNSTHGTGGSG-GSASGGNPTG--IMKAGAKGNNGSGRGGSAGS- 221 Query: 16925 VIGELLTYPSTTGRGAGGEGNTPGPNG 17005 +T GRG GG G TP G Sbjct: 222 ---------ATGGRGGGGGGYTPATAG 239 >ref|NP_944342.1|gp33 Length = 472 Score = 46.2 bits (108), Expect = 2e-04 Identities = 52/164 (31%), Positives = 63/164 (38%), Gaps = 12/164 (7%) Frame = +2 Query: 16580 AGGEGNTPGPKVIGAALTYPSTTGRGAGGEGNTPV--PNEIGESLTYPSTTGRGAGGEGN 16753 A G+T P + Y S G GAGG G V PN + +G G GG G Sbjct: 257 ATSSGSTTVPPNV--TTIYVSGNGGGAGGGGCATVGTPNIM---------SGAGGGGAGQ 305 Query: 16754 TPGPKVI----GESLTYPSTTGRGAGGEGNIPVPNEIGESLTYPSTTG----RGAGGEGN 16909 + + GE+LTY T GAG G VP G + T + GG G Sbjct: 306 FTEWQALTVVPGETLTY---TIGGAGNGGAPNVPGGAGGNTTITGSVSGLLLSLTGGVGG 362 Query: 16910 TPGPKVIGELLTYPSTTGRGA--GGEGNTPGPNGIGVFWQTQGS 17035 +PG T G GA GG G GP G+G GS Sbjct: 363 SPGVGGAYSAYTAGGNGGAGAPAGGYGQDTGPQGVGASGGAGGS 406 Score = 44.3 bits (103), Expect = 6e-04 Identities = 51/152 (33%), Positives = 64/152 (42%), Gaps = 14/152 (9%) Frame = +2 Query: 16583 GGEGNTPGPKVIGAALTYPSTTGRGAG-------GEGNTPVPNEIGESLTYPSTTGRGA- 16738 GG GN P V G A + TG +G G G +P + T G GA Sbjct: 325 GGAGNGGAPNVPGGAGGNTTITGSVSGLLLSLTGGVGGSPGVGGAYSAYTAGGNGGAGAP 384 Query: 16739 -GGEGNTPGPKVIGESLTYPSTTGRGA----GGEGNIPVPNEIGES-LTYPSTTGRGAGG 16900 GG G GP+ +G S G G GG G ++IG + L + TG G GG Sbjct: 385 AGGYGQDTGPQGVGAS------GGAGGSNPFGGGGTAVRGSQIGNTMLAGLAATGYGCGG 438 Query: 16901 EGNTPGPKVIGELLTYPSTTGRGAGGEGNTPG 16996 G G G T P++TG +GG G TPG Sbjct: 439 -GGCGGVYAAGN-TTIPTSTG-NSGGAG-TPG 466 Score = 36.2 bits (82), Expect = 0.16 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 2/86 (2%) Frame = +2 Query: 16568 AGRGAGGEGNTPGPKVIGAALTYPSTTGRGAGGEGNTPV-PNEIGES-LTYPSTTGRGAG 16741 AG AGG G GP+ +GA+ G G G T V ++IG + L + TG G G Sbjct: 381 AGAPAGGYGQDTGPQGVGAS---GGAGGSNPFGGGGTAVRGSQIGNTMLAGLAATGYGCG 437 Query: 16742 GEGNTPGPKVIGESLTYPSTTGRGAG 16819 G G G G + T P++TG G Sbjct: 438 G-GGCGGVYAAGNT-TIPTSTGNSGG 461 >ref|YP_024421.1|Hypothetical protein Length = 741 Score = 42.0 bits (97), Expect = 0.003 Identities = 62/222 (27%), Positives = 73/222 (32%), Gaps = 11/222 (4%) Frame = +2 Query: 16412 HRSPEVVAKDSQRDAYLRSLGYT-VIRFENQLVLNNPAEF-LNQIKTALQLPSTAGRGAG 16585 +R+ VV +S D+ T V F +Q A F L+ T +Q+ G G G Sbjct: 453 NRTVSVVGTNSVGDSAPAVATVTPVSNFISQSTFTTNAAFTLHPDCTFVQVQGCGGGGGG 512 Query: 16586 GEGNTPGPKVIGAALTYPSTTGRGAGGEGNTPV--PNEIGESLTYPSTTGRGAGG----- 16744 G G T G S G G GG V N IG T G G GG Sbjct: 513 GSGRTAGGN--------DSIGGGGGGGAALVSVLSSNAIG-GQTATIVVGGGGGGAANRA 563 Query: 16745 --EGNTPGPKVIGESLTYPSTTGRGAGGEGNIPVPNEIGESLTYPSTTGRGAGGEGNTPG 16918 GN V G + S TG AG G G S G GAG Sbjct: 564 IAAGNGGNSSVSGAGIVGLSWTGGRAGANGVQGYYASGGNGGNNSSNVGAGAGASSGNAA 623 Query: 16919 PKVIGELLTYPSTTGRGAGGEGNTPGPNGIGVFWQTQGSGKS 17044 V G GG G PG G W++ G S Sbjct: 624 SGV------------SGGGGGGTGPGNGG----WRSGNGGGS 649 Score = 38.9 bits (89), Expect = 0.025 Identities = 38/141 (26%), Positives = 50/141 (35%), Gaps = 1/141 (0%) Frame = +2 Query: 16562 STAGRGAGGEGNTPGPKVIGAALTYPSTTGRGAG-GEGNTPVPNEIGESLTYPSTTGRGA 16738 S G GAG V G G G G G G N G + ++ G A Sbjct: 609 SNVGAGAGASSGNAASGVSGGG-------GGGTGPGNGGWRSGNGGGSNAGVGTSNGNNA 661 Query: 16739 GGEGNTPGPKVIGESLTYPSTTGRGAGGEGNIPVPNEIGESLTYPSTTGRGAGGEGNTPG 16918 G G G S + G GG+G + + TG G GG G + G Sbjct: 662 QAAGGGGG----GNSAVWWDNAAAGKGGDGT------ASSGASGGNATGNGNGGGGGSGG 711 Query: 16919 PKVIGELLTYPSTTGRGAGGE 16981 ++G T S G G+GG+ Sbjct: 712 TSILGN-GTDGSAGGNGSGGK 731 >ref|NP_958559.1|putative protein Length = 261 Score = 42.0 bits (97), Expect = 0.003 Identities = 29/126 (23%), Positives = 56/126 (44%) Frame = +3 Query: 2907 EVKIREKSAGLLAVDTPFTFPDGDQYQLYIKVMPGGLLRLTDMGHTLMHLSYEHDIDKFC 3086 E K ++ S ++ ++ PF D+ +Y + LTD G TL +L + + Sbjct: 18 EAKFKDLSQNVIRIEVPFLDSFSDEIVMYAIKNKNNSITLTDDGWTLDNLK-SNGVTISR 76 Query: 3087 EGTRGALYEKIKSETSVEEHDGSLCIDSTSEQLAADIFRLGQAITSISDLTFLKRSRIES 3266 R ++ + + E DG L + RL QAI +++D+ L ++ +S Sbjct: 77 SKNRKRIFTNRLNAFGITEKDGELTTTVEYKYFPTAKNRLLQAILAVNDMFMLSKNTTKS 136 Query: 3267 TFYDDL 3284 F++D+ Sbjct: 137 LFFEDV 142 >ref|NP_944801.1|unknown Length = 261 Score = 41.6 bits (96), Expect = 0.004 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 8/134 (5%) Frame = -1 Query: 2247 NPVGVMGKGIALQFKHAFPENFKA------YADAVNRKQIRT--GEVQVVPVSSLNGVRY 2092 N + +MG GIA + +P+ ++ YA + K G V + Sbjct: 28 NCMNLMGAGIADKISKLYPKAYETDTEVYLYAGGIGHKPCENLLGNFSVARLKQGRIANL 87 Query: 2091 IITFPTRNHWRYPSKPEWITAGLRDLRKKIEDYQIESIAIPPLGFGNGGLDWSVVKAEIE 1912 T RY + + + L+ L + E Q++ + +P +G G GGLD V I Sbjct: 88 YTQLKTGKDARYSA----LESSLKQLNRYCEVNQLKKVGLPMIGAGIGGLDPQAVTVIIN 143 Query: 1911 SALQGLPVEIQVYE 1870 ++ + V + VYE Sbjct: 144 QVMKSVDVYLYVYE 157 >ref|NP_795389.1|hypothetical protein Length = 210 Score = 41.2 bits (95), Expect = 0.005 Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 8/168 (4%) Frame = +1 Query: 4321 TYYLFDSPLLKQLLKKVSEIPSSMDYDAFGRIYEYFLGEFAMSEGQGGGEFYTPVSIVRL 4500 T LFD + + ++ +I + + YD F R YF E A + + + +TP+S+ +L Sbjct: 24 TDILFDKDSREDIFRQFLDIETDLSYDWFMR---YFEDEHA--DRKNKKQDFTPLSVSKL 78 Query: 4501 LTEVI--EPYHGRILDPACGSGGMFVSSARFVAQHK--QNP----SAELSIHGIEKTDET 4656 LT ++ YH + A G+GG+ + + + +H+ NP ++ E +D Sbjct: 79 LTGLVSGHTYH----ESAVGTGGILIQAWQ---RHRISSNPFTYKPSDYWYQVEELSDRA 131 Query: 4657 GRLCRLNLAVHGLEGRIMHGGNVNSYYDDPHDATGNFDFVLANPPFNV 4800 N+++ G+ G ++HG ++ + + D +L+ NV Sbjct: 132 LPFLLFNMSIRGINGVVVHGDSLTRQVKNIYFLQNTKDDMLSFSDINV 179 >ref|NP_851958.1|hypothetical protein Length = 218 Score = 40.8 bits (94), Expect = 0.007 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 1/104 (0%) Frame = -2 Query: 21809 AFSDGENATNDAKITEL-AKAIEDYEDRHVVMPMPLVIKKPETLPDVIELKMFEKKMKRK 21633 A SD + T D EL IE YE R M P I + I+ +M ++ + Sbjct: 26 ASSDLQPGTEDFDEFELLGLLIEHYESREFPMDKPDPI-------EAIKFRMDQQGLSYA 78 Query: 21632 DMAKLLGISDTRLSEVMHGKRKVNMELAKRLYKTLGVDPKFILE 21501 DM + +G S +++SEV++ KR +++ + +RL+ LG+ +++ Sbjct: 79 DMKQYIG-SASKVSEVLNRKRPLSLSMIRRLHDGLGIPADILIQ 121 >ref|NP_817811.1|gp50 Length = 571 Score = 40.8 bits (94), Expect = 0.007 Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 8/177 (4%) Frame = +2 Query: 17741 VRHFLGRGFI----GKAM-VVSIDKATAIRMYDKVQRFWMEETGLVRQQLVRYDLSS-ER 17902 +R + GF+ GK + + ++DK +R F +E V + V Y + + E Sbjct: 186 LRWAIKHGFLVQPRGKTVRIKNLDKLDDVRTV--AGDFKNDELAEVMEAAVEYVVDAIEL 243 Query: 17903 RGELQERLQVLESTDMAVIVSPGQNEIGQMQQIGLDIVKHRKRMVESQPALDEKFKDSVD 18082 + + S D A +++ NE G + + H +R + ++++ V Sbjct: 244 HARERTNIVFAASVDGAHMIADAINERGMTAEAVTGSMPHAER-----EQVYDRYRTGVT 298 Query: 18083 PLRIVFVCAMWLT-GFDAPSCSTVYLDKPMRNHTLM-QTIARANRVFPGKHSGMIVD 18247 V M LT G D P C TV + +P R+ L Q + RA R+FPGK +++D Sbjct: 299 KN---LVTVMVLTEGADFPMCDTVVMARPTRSKNLYAQMVGRALRLFPGKTDALVLD 352 >ref|NP_817998.1|gp25 Length = 941 Score = 40.8 bits (94), Expect = 0.007 Identities = 49/173 (28%), Positives = 65/173 (37%), Gaps = 17/173 (9%) Frame = +2 Query: 16571 GRGAGGEGNTPGPKVIGAAL--TYPSTTGRGAGG-------------EGNTPVPNEIGES 16705 G G GG G + A+ TY +T G G G +G G S Sbjct: 757 GGGGGGGGAYIDVLIPVEAIGPTYSTTRGLGGAGGAKAYSGDGKDGADGGASTFTSGGVS 816 Query: 16706 LTYPSTTGRGAGGEGNTPGPKVIGES--LTYPSTTGRGAGGEGNIPVPNEIGESLTYPST 16879 LT G G ++ G + +G + +T TG G GN G+S T Sbjct: 817 LTANGGQGGKKGTNSSSSGARGLGGTAVITGLDATGFSGGNGGNGGSSPTNGQS----RT 872 Query: 16880 TGRGAGGEGNTPGPKVIGELLTYPSTTGRGAGGEGNTPGPNGIGVFWQTQGSG 17038 G GAGG+G G+L + +G G G + GP G G F GSG Sbjct: 873 NGAGAGGKGGG------GKLSNDNTISG---GNNGTSDGPAGNGGFGSAGGSG 916 >ref|NP_039696.1|predicted 21.3kd protein Length = 220 Score = 39.3 bits (90), Expect = 0.019 Identities = 47/175 (26%), Positives = 58/175 (33%), Gaps = 10/175 (5%) Frame = +2 Query: 16571 GRGAGGEGNTPGPKVIGAALTYPSTTGRGAGGEGNTPVPNEIGESLTYPSTTGRGAGGEG 16750 G G GG+G + GRG V E G + + T G G G Sbjct: 68 GGGGGGKG-----------MALADGWGRGGDAGSWAIVTLERGVHIPLSTKTITGLVGAG 116 Query: 16751 NTPGPKVIGESLTYPSTTGRGAGGEGNIPVPNEIGESLTYPSTTGRGAGGE--------G 16906 G S AGG G + +G S T G GG G Sbjct: 117 GAAGAG---------SVFSGKAGGPGGNTTASAVGWS---GLTATGGPGGSVIDILSVAG 164 Query: 16907 NTPGPKVIGELLTYPSTTGRGAGGEGNTPGPNGIG--VFWQTQGSGKSFSMVFFA 17065 +PG + + L AGG GN PG G G V Q+ G+G FFA Sbjct: 165 KSPGDRTYNDQLYIGGAQQNSAGGNGNAPGGGGAGAQVSAQSGGAGARGQAWFFA 219 >ref|YP_077230.1|Hypothetical protein Length = 757 Score = 38.9 bits (89), Expect = 0.025 Identities = 25/78 (32%), Positives = 35/78 (44%) Frame = +2 Query: 16688 NEIGESLTYPSTTGRGAGGEGNTPGPKVIGESLTYPSTTGRGAGGEGNIPVPNEIGESLT 16867 N+ G S P+++ G+GG G + P G G G GG + P PN G Sbjct: 169 NQSGSSNNSPNSSSPGSGGGGGSSNPNSGG---------GSGGGGGSSSP-PNSGGGGGN 218 Query: 16868 YPSTTGRGAGGEGNTPGP 16921 +G G+GG G + GP Sbjct: 219 NNPNSGGGSGGGGGSTGP 236 Score = 37.4 bits (85), Expect = 0.072 Identities = 24/78 (30%), Positives = 36/78 (46%) Frame = +2 Query: 16532 NQIKTALQLPSTAGRGAGGEGNTPGPKVIGAALTYPSTTGRGAGGEGNTPVPNEIGESLT 16711 NQ ++ P+++ G+GG G + P G G G GG ++P PN G Sbjct: 169 NQSGSSNNSPNSSSPGSGGGGGSSNPNSGG---------GSGGGGGSSSP-PNSGGGGGN 218 Query: 16712 YPSTTGRGAGGEGNTPGP 16765 +G G+GG G + GP Sbjct: 219 NNPNSGGGSGGGGGSTGP 236 >ref|NP_542581.1|hypothetical protein Length = 311 Score = 38.9 bits (89), Expect = 0.025 Identities = 44/161 (27%), Positives = 64/161 (39%), Gaps = 10/161 (6%) Frame = +2 Query: 16532 NQIKTALQLPSTAGRGAGGEGNTPGPKVIGAALTYPSTTGRGAGGEGNTPVPNEIGESLT 16711 +Q +ALQ + G G G I + S+ G GAG G+ ++ G+ + Sbjct: 161 SQPGSALQPATDGGYGHGS---------IHGRINEYSSGGGGAGEPGDADGDSQGGDGMD 211 Query: 16712 YPSTTGRGAGGEG---NTPGPKVIGESLTYP---STTGRGAGGEGNIPVPN----EIGES 16861 + ST G G G G V + + P S G G GG G + V + +GE Sbjct: 212 FSSTFGTQYGENGWFAGGGGGSVYSTTASGPNGRSLGGNGGGGNGGVEVSDGSGLNVGED 271 Query: 16862 LTYPSTTGRGAGGEGNTPGPKVIGELLTYPSTTGRGAGGEG 16984 P+T G G G E ++ L+ S G GG G Sbjct: 272 -AMPNTGGGGGGSERDSS--------LSASSDAYGGDGGSG 303 >ref|NP_963976.1|ORF B494 Length = 494 Score = 38.5 bits (88), Expect = 0.032 Identities = 23/76 (30%), Positives = 39/76 (51%) Frame = -1 Query: 1626 YALNGYYLKGFEQKEAKPFEPFDIIVERSDEVLDYIQNKLNPVEKTHLDKVLKLIKGFES 1447 Y N +L +E+ AKPFEP DE L+Y K + +++ K ++++K +S Sbjct: 292 YIQNVLHLDNYERISAKPFEPNITYYLYDDEKLNYNFGKRDGLKQ----KTVEVVKNLKS 347 Query: 1446 PYGLELLATVDYLIIE 1399 P G+ L+ Y + E Sbjct: 348 PEGITLVVVSSYQMAE 363 >ref|NP_817477.1|gp27 Length = 946 Score = 37.4 bits (85), Expect = 0.072 Identities = 37/149 (24%), Positives = 51/149 (34%), Gaps = 7/149 (4%) Frame = +2 Query: 16565 TAGRGAGGEGNTPGPKVIGAALTYPSTTGRGAGGEGNTPVPNE-IGESLTYPSTTG---- 16729 T+G G GG G+ + + G G+GG ++ +G + T TG Sbjct: 797 TSGDGRGGANGGASVFSSGSVVITANGGGHGSGGTNSSSSGTRGLGGTATAVGITGVTAS 856 Query: 16730 --RGAGGEGNTPGPKVIGESLTYPSTTGRGAGGEGNIPVPNEIGESLTYPSTTGRGAGGE 16903 GA G P G GRG GG+ + G + T G G GG Sbjct: 857 LLSGANGGNGGSSPTSGGSKTDGAGAGGRGGGGKKSNDKTFNGGNNGTSDGPAGNGGGGS 916 Query: 16904 GNTPGPKVIGELLTYPSTTGRGAGGEGNT 16990 G + T G GG+G T Sbjct: 917 SGGSG-----------TGTDAGDGGDGYT 934 >ref|YP_195257.1|virion structural protein Length = 560 Score = 37.4 bits (85), Expect = 0.072 Identities = 49/172 (28%), Positives = 66/172 (38%), Gaps = 18/172 (10%) Frame = +2 Query: 16565 TAGRGAGG--------EGNTPGPKVIGAALTYPSTTGRGAGGEGNTPVPNEIGESLTYPS 16720 T G GAGG G + P G +Y G+ G G + G + Sbjct: 27 TVGGGAGGFEPFNDRFSGGSGSP---GGTTSYRDGIGQLIAGFGGSSSIGGTGTPNFFRG 83 Query: 16721 TTGRGAGGEGNTPG-PKVIGESLTYPSTTG--RGAGGEGNIPVPNEIGESLTYPSTTGRG 16891 G+ A + N P + S+ + G G+GG G +G S + PS++G G Sbjct: 84 RFGQTATSDFNPRADPGYLDFSIGFSDGNGWRYGSGGPGAT-----LGTSGSSPSSSGGG 138 Query: 16892 AGGEG------NTPGPKVIGELLTYPSTTGRGAGGEGN-TPGPNGIGVFWQT 17026 GG G NT G V GE T G GG GN G GI ++T Sbjct: 139 GGGAGYRTMARNTRG-AVPGENNTIIIGFGGSQGGSGNRRAGARGIAYIYET 189 >ref|YP_006904.1|Hypothetical protein Length = 172 Score = 37.0 bits (84), Expect = 0.094 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = +1 Query: 9007 QTVHLCEGVPDVVSLESKGLIALGVLGATSFRTEWVD-RFLKFKVVVLGDGDEGGAKFAK 9183 + V + E V V+L + G AL +LG++ + + L FK+V +GD D G KFA+ Sbjct: 84 KVVLIAESVFKAVALHNAGYPALAMLGSSPGKALLKQLKLLPFKLVAVGDNDPAGEKFAR 143 Query: 9184 DISKY 9198 ++ + Sbjct: 144 QLNGF 148 >ref|YP_195258.1|hypothetical protein Length = 582 Score = 37.0 bits (84), Expect = 0.094 Identities = 40/146 (27%), Positives = 49/146 (33%) Frame = +2 Query: 16577 GAGGEGNTPGPKVIGAALTYPSTTGRGAGGEGNTPVPNEIGESLTYPSTTGRGAGGEGNT 16756 G GG G G +G GAGG G V + G + G G GG + Sbjct: 99 GDGGRGGNDGES---------GWSGCGAGG-GAATVFSLAGSDVIVAGGGGGGGGGAFSC 148 Query: 16757 PGPKVIGESLTYPSTTGRGAGGEGNIPVPNEIGESLTYPSTTGRGAGGEGNTPGPKVIGE 16936 GP+ P G AG N + + PS G+G G+ PG Sbjct: 149 GGPE-------RPGARGGDAG--------NWVNTTSISPSNGGQGGDKSGDGPG------ 187 Query: 16937 LLTYPSTTGRGAGGEGNTPGPNGIGV 17014 G GG G PG G GV Sbjct: 188 ----------GGGGGGGAPGGGGGGV 203 >ref|NP_075300.1|gp33 Length = 267 Score = 36.6 bits (83), Expect = 0.12 Identities = 41/150 (27%), Positives = 53/150 (35%), Gaps = 5/150 (3%) Frame = +2 Query: 16568 AGRGAGGEGNTPGPKVIGAALTYPSTTGRGAGGEGNTPVPNEIG-----ESLTYPSTTGR 16732 AG G G G V + + +G AG +G + + G S++ S TG Sbjct: 126 AGSSNGNNGAPGGSTVFSSGSVSLTASGGAAGVKGTSSSASGSGGAGGTTSISGVSATGY 185 Query: 16733 GAGGEGNTPGPKVIGESLTYPSTTGRGAGGEGNIPVPNEIGESLTYPSTTGRGAGGEGNT 16912 G GN G+S T G GAGG G V + + G G + Sbjct: 186 TGGKGGNGGSSPSSGQS----RTDGSGAGGGGGGGVRS---------NDNSFSGGSNGTS 232 Query: 16913 PGPKVIGELLTYPSTTGRGAGGEGNTPGPN 17002 GP G GRG G NT G N Sbjct: 233 SGPAGNG---------GRGTDGSINTGGSN 253 >ref|NP_542568.1|putative methyltransferase-endonuclease Length = 1288 Score = 36.6 bits (83), Expect = 0.12 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 5/74 (6%) Frame = +1 Query: 4399 DAFGRIYEYFLGEFAMSEGQGGGEFYTPVSIVRLLTEVIEPYHG----RILDPACGSGGM 4566 D G +Y+++ F + GEFYTP ++ + + ++ G R++DP+CGSG Sbjct: 390 DLLGDLYQHY---FDPETRKALGEFYTPQPVIDYIMDGVDYNVGVSGERLIDPSCGSGTF 446 Query: 4567 FVSSA-RFVAQHKQ 4605 V + R++ K+ Sbjct: 447 LVEAVNRYIEDVKR 460 >ref|YP_164385.1|cro Length = 60 Score = 36.6 bits (83), Expect = 0.12 Identities = 13/40 (32%), Positives = 31/40 (77%) Frame = -2 Query: 21689 ETLPDVIELKMFEKKMKRKDMAKLLGISDTRLSEVMHGKR 21570 E L + ++F++KM ++++AK++GIS+ LS++++G++ Sbjct: 3 EELGIKVRSELFKRKMSQRELAKMIGISEAYLSDIINGRK 42 >ref|NP_817647.1|gp58 Length = 135 Score = 35.0 bits (79), Expect = 0.36 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Frame = +1 Query: 8347 HDKASPSLSFSINYNTWRCFGACGKHGDAINLVMEKEGLDFNAA---LEWFSNNFNADVK 8517 H +PS S S +N +RCF AC G A+ ++ E+E + + A E S + + Sbjct: 36 HGDETPSASISFKHNAFRCF-ACPVKGSAVAIIKEQEEVSYAEAKRIAEELSPGGDGTIP 94 Query: 8518 RQFSGQRKR 8544 Q S Q +R Sbjct: 95 AQPSRQSRR 103 >ref|YP_164671.1|orf36 Length = 148 Score = 34.7 bits (78), Expect = 0.47 Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 5/125 (4%) Frame = -1 Query: 2232 MGKGIALQFKHAFPENFKAYADAVNRKQIRTGEVQVVPVSSLNGVRYIITFPTRNHWRYP 2053 MG GIA +F + Y D R T + VP S L R I T+N RY Sbjct: 29 MGAGIAKEFSKRL--GGRKYIDKYIRPY--TSNSKCVP-SILKDGRVIYNLVTKN--RYY 81 Query: 2052 SKPEW--ITAGLRDLRKKI---EDYQIESIAIPPLGFGNGGLDWSVVKAEIESALQGLPV 1888 KP + +T L L++++ D +A+P +G G L W V+ I+ Sbjct: 82 QKPSYKSLTESLYSLKEQLVESSDGSAVKLAMPRIGSGLDKLTWRKVRRIIKQVFADTNF 141 Query: 1887 EIQVY 1873 +I +Y Sbjct: 142 DIAIY 146 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 128,345,765 Number of Sequences: 14420 Number of extensions: 2769892 Number of successful extensions: 8189 Number of sequences better than 0.5: 32 Number of HSP's better than 0.5 without gapping: 5083 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8122 length of database: 3,019,461 effective HSP length: 111 effective length of database: 1,418,841 effective search space used: 11393293230 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig48 (21,917 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958229.1|gene 55 protein 124 4e-28 ref|NP_859396.1|hypothetical protein 108 2e-23 ref|YP_025041.1|putative transposase B 94 6e-19 ref|NP_536395.1|ISBt3 transposase subunit protein 92 2e-18 ref|NP_038305.1|ORF5 45 2e-04 ref|NP_839903.1|putative DnaC protein 40 0.008 ref|NP_076710.1|DnaC 40 0.010 ref|NP_061611.1|orf 21 39 0.017 ref|NP_620626.1|putative transposase 39 0.017 ref|NP_695040.1|putative replication protein DnaC 39 0.017 ref|NP_862860.1|gp21 39 0.022 ref|NP_075485.1|hypothetical protein 39 0.022 ref|NP_803371.1|dnaC 39 0.022 ref|NP_958645.1|77ORF013 38 0.038 ref|NP_938213.1|A transposase 36 0.14 ref|NP_076651.1|DnaC 35 0.32 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 124 bits (311), Expect = 4e-28 Identities = 88/263 (33%), Positives = 130/263 (49%), Gaps = 7/263 (2%) Frame = -3 Query: 1716 VSTQCELAGVTRSGY-YGQSKSLMPNTEDLELMKLIDEEY-TRHPFYGSRRMKRVLLAQG 1543 V T C + GV RS Y Y +++ P+ L + E + H G+R + + +G Sbjct: 28 VVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRG 87 Query: 1542 RKVNRKRVQRLMRNLGLAGIAPGPNTSKP--HPQHKIYPYLLRGLVITRPNHVWSTDVTY 1369 ++ R RLM+ LGL + K H I YL R +T PN VW DVTY Sbjct: 88 YQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTY 147 Query: 1368 CRLPGGFMYLTAVIDWYSRKVLAWRLSNSLDSSFCVDCLEEAIRKYGMP--EIFNTDQGT 1195 + YL V+D ++RK + W +S S DS + LE A G P +F++DQG+ Sbjct: 148 IWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGS 207 Query: 1194 QYTSEAFTGVLKSHDIRISMDGRGRALDNIFVERLWRNVKQEDLYLKGYETAVEMMRGLT 1015 YTS F +L + IR SM RG DN +ER +R++K E + + GY + E +T Sbjct: 208 HYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAIT 267 Query: 1014 EYF-RFYNIERPHQSLGYKTPDE 949 +Y +Y+ RPH+ G P+E Sbjct: 268 DYIVGYYSALRPHEYNGGLPPNE 290 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 108 bits (270), Expect = 2e-23 Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 3/230 (1%) Frame = -3 Query: 1629 ELMKLIDEEYTRHPFYGSRRMKRVLLAQGRKVNRKRVQRLMRNLGLAGIAPGPNTSKPHP 1450 E+ ++ DE H YG R++ R LL +G +V R V RLM +GLAG+ G Sbjct: 54 EIQRVYDEN---HQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTIS 110 Query: 1449 QHKIYP--YLLRGLVITRPNHVWSTDVTYCRLPGGFMYLTAVIDWYSRKVLAWRLSNSLD 1276 + + + R V RP+ +W D TY GF+Y+ +ID ++ ++ WR+S+S++ Sbjct: 111 RKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSME 170 Query: 1275 SSFCVDCLEEAI-RKYGMPEIFNTDQGTQYTSEAFTGVLKSHDIRISMDGRGRALDNIFV 1099 ++F +D LE+A+ + I ++D+G+QY S A+T LK + S G + DN Sbjct: 171 TTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMA 230 Query: 1098 ERLWRNVKQEDLYLKGYETAVEMMRGLTEYFRFYNIERPHQSLGYKTPDE 949 E + K E ++ K ++ E+ + +YN R LG+ P E Sbjct: 231 ESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAE 280 >ref|YP_025041.1|putative transposase B Length = 280 Score = 94.0 bits (232), Expect = 6e-19 Identities = 78/271 (28%), Positives = 132/271 (48%), Gaps = 18/271 (6%) Frame = -3 Query: 1704 CELAGVTRSGYYG--QSKSLMPNTEDLELMKLIDEEYTRHPF-YGSRRMKRVLLAQGR-- 1540 C + GV+R+ YY K ED +L + I + YG ++ L + + Sbjct: 2 CRILGVSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQPL 61 Query: 1539 --KVNRKRVQRLMRNLGLAGIAPGPNTSKPHPQHKIY--PYLLR-GLVITRPNHVWSTDV 1375 + + +R+ RLM+ L + + + + K+ P LL+ T N W+ D+ Sbjct: 62 QLRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTADM 121 Query: 1374 TYCRLP-GGFMYLTAVIDWYSRKVLAWRLSNSLDSSFCVDCLEEAIRKYGMPE--IFNTD 1204 TY + G+ YL+ ++D +SR+++ + S +D+ + LE A++ + I +TD Sbjct: 122 TYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIHTD 181 Query: 1203 QGTQYTSEAFTGVLKSHDIRISMDGRGRALDNIFVERLWRNVKQEDLY----LKGYETAV 1036 G+QYTS+ + L IR S +G DN +E ++K+E +Y + YETA Sbjct: 182 LGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAA 241 Query: 1035 EMMRGLTEYFR-FYNIERPHQSLGYKTPDEV 946 + L EY FYN +R H SLGY+TP +V Sbjct: 242 AV---LFEYVHAFYNRKRIHSSLGYQTPLQV 269 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 92.0 bits (227), Expect = 2e-18 Identities = 65/224 (29%), Positives = 110/224 (49%), Gaps = 12/224 (5%) Frame = -3 Query: 1584 YGSRRMKRVLLAQGRKVNRKRVQRLMRNLGLAGIAPGP-------NTSKPHPQHKIYPYL 1426 YG ++ + + +G V R V RLM+ GL G G + + P P ++ Sbjct: 46 YGVPKVWKQMNREGITVARCTVGRLMKLQGLRGAVRGKRVRTTITDVTAPRPLDRVN--- 102 Query: 1425 LRGLVITRPNHVWSTDVTYCRLPGGFMYLTAVIDWYSRKVLAWRLSNSLDSSFCVDCLEE 1246 R RPN +W +D TY G++Y+ VID ++R+++ WR+S+S+ + F +D LE+ Sbjct: 103 -RQFKADRPNQLWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSSSMTTDFVLDALEQ 161 Query: 1245 AIRKYGMPE----IFNTDQGTQYTSEAFTGVLKSHDIRISMDGRGRALDNIFVERLWRNV 1078 A+ E I ++D+G+QY S ++ L I S+ RG + DN E + Sbjct: 162 ALYARQPGEDGTLIHHSDRGSQYVSIRYSERLAEAGIEPSVGSRGDSYDNALAETINGLY 221 Query: 1077 KQEDLYLKG-YETAVEMMRGLTEYFRFYNIERPHQSLGYKTPDE 949 K E ++ + ++T + E+ +YN R + LGY P E Sbjct: 222 KTELIHRRAPWKTRESVELATLEWVAWYNHHRLMEPLGYIPPAE 265 >ref|NP_038305.1|ORF5 Length = 260 Score = 45.4 bits (106), Expect = 2e-04 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Frame = -3 Query: 21657 NFNLILIGPSGTGKSYLAGGLCHEALK-LGYH----ALFRTMDDLIQTIRFKEITAAAAR 21493 ++N++LIG +G GKS+LA + ALK L H +F + DL+ I KE A Sbjct: 119 DYNIVLIGNTGVGKSHLA----YSALKALSDHTKKMGVFINVVDLLAKI--KEDFNLEAE 172 Query: 21492 EYKRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDE 21313 +R+ A LV+DD+ EK L + L+++T IITTN SP++ G Sbjct: 173 YIRRISEAEWLVLDDL---GTEKVTEWSSGILYSILNKRTKTIITTNLSPQDILGTYGKR 229 Query: 21312 V 21310 V Sbjct: 230 V 230 Score = 45.4 bits (106), Expect = 2e-04 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Frame = +3 Query: 309 NFNLILIGPSGTGKSYLAGGLCHEALK-LGYH----ALFRTMDDLIQTIRFKEITAAAAR 473 ++N++LIG +G GKS+LA + ALK L H +F + DL+ I KE A Sbjct: 119 DYNIVLIGNTGVGKSHLA----YSALKALSDHTKKMGVFINVVDLLAKI--KEDFNLEAE 172 Query: 474 EYKRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDE 653 +R+ A LV+DD+ EK L + L+++T IITTN SP++ G Sbjct: 173 YIRRISEAEWLVLDDL---GTEKVTEWSSGILYSILNKRTKTIITTNLSPQDILGTYGKR 229 Query: 654 V 656 V Sbjct: 230 V 230 >ref|NP_839903.1|putative DnaC protein Length = 294 Score = 40.4 bits (93), Expect = 0.008 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%) Frame = -3 Query: 21654 FNLILIGPSGTGKSYLAGGLCHEA---LKLG-YHALFRTMDDLIQTIR----FKEITAAA 21499 FN + +G +G GKS+LA + E LK + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 21498 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 21328 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 21327 MLGDEVLA 21304 D++++ Sbjct: 264 SYDDKIVS 271 Score = 40.4 bits (93), Expect = 0.008 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%) Frame = +3 Query: 312 FNLILIGPSGTGKSYLAGGLCHEA---LKLG-YHALFRTMDDLIQTIR----FKEITAAA 467 FN + +G +G GKS+LA + E LK + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 468 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 638 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 639 MLGDEVLA 662 D++++ Sbjct: 264 SYDDKIVS 271 >ref|NP_076710.1|DnaC Length = 294 Score = 40.0 bits (92), Expect = 0.010 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 11/128 (8%) Frame = -3 Query: 21654 FNLILIGPSGTGKSYLAGGLCHEALKL----GYHALFRTMDDLIQTIR----FKEITAAA 21499 FN + +G +G GKS+LA + E + + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDDKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 21498 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 21328 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 21327 MLGDEVLA 21304 D++++ Sbjct: 264 SYDDKIVS 271 Score = 40.0 bits (92), Expect = 0.010 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 11/128 (8%) Frame = +3 Query: 312 FNLILIGPSGTGKSYLAGGLCHEALKL----GYHALFRTMDDLIQTIR----FKEITAAA 467 FN + +G +G GKS+LA + E + + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDDKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 468 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 638 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 639 MLGDEVLA 662 D++++ Sbjct: 264 SYDDKIVS 271 >ref|NP_061611.1|orf 21 Length = 257 Score = 39.3 bits (90), Expect = 0.017 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 21651 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 21478 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 118 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIQMLMDRIKAAYNKNAVETTDELVRL 177 Query: 21477 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 21301 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 178 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 231 Query: 21300 ALLDRLLYKCEVIKLTGKSYR 21238 + R+ + +++ G +R Sbjct: 232 RINSRMKHNARKVRVIGDDFR 252 Score = 39.3 bits (90), Expect = 0.017 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = +3 Query: 315 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 488 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 118 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIQMLMDRIKAAYNKNAVETTDELVRL 177 Query: 489 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 665 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 178 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 231 Query: 666 ALLDRLLYKCEVIKLTGKSYR 728 + R+ + +++ G +R Sbjct: 232 RINSRMKHNARKVRVIGDDFR 252 >ref|NP_620626.1|putative transposase Length = 362 Score = 39.3 bits (90), Expect = 0.017 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 19/149 (12%) Frame = -3 Query: 1344 YLTAVIDWYSRKVLAWRLSNSLDSSFCVDCLEEAIRKYGMPEIFN-------TDQGTQYT 1186 Y+ ID +R L + + + L + +D +++AI + IF TD G+++ Sbjct: 206 YVYDFIDEKTRLALGY-VYDKLSTDNAIDAVKKAISDF--KNIFGIIITRIRTDNGSEFI 262 Query: 1185 SEA------------FTGVLKSHDIRISMDGRGRALDNIFVERLWRNVKQEDLYLKGYET 1042 + FT L +I N +ER +N + ++ + Sbjct: 263 NNYRNNQKISVKKTNFTQFLTDKNILHQTTPVRSPQSNGKIERFHQNYTKLFVFEEKILN 322 Query: 1041 AVEMMRGLTEYFRFYNIERPHQSLGYKTP 955 AV + L +Y+ FYN ER H+SL ++TP Sbjct: 323 AVSLQNKLNDYYYFYNFERVHKSLNFQTP 351 >ref|NP_695040.1|putative replication protein DnaC Length = 296 Score = 39.3 bits (90), Expect = 0.017 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 5/110 (4%) Frame = -3 Query: 21651 NLILIGPSGTGKSYLAGGLCHEALK-LGYHALFRTMDDLIQTIR--FKEITAAAAREY-- 21487 N ++ GP+GTGKS+LA + + L+ +F + +++ I+ F + + EY Sbjct: 153 NTVVSGPAGTGKSHLAMSILKDCLQHTDLTVIFASWSEVLHLIKDSFDNKDSFYSTEYFM 212 Query: 21486 KRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKE 21337 + + LLVIDDI EK + L L +T IITTN E Sbjct: 213 EVFRNTDLLVIDDI---GSEKITEWSMSLLTEVLDARTKTIITTNLKSDE 259 Score = 39.3 bits (90), Expect = 0.017 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 5/110 (4%) Frame = +3 Query: 315 NLILIGPSGTGKSYLAGGLCHEALK-LGYHALFRTMDDLIQTIR--FKEITAAAAREY-- 479 N ++ GP+GTGKS+LA + + L+ +F + +++ I+ F + + EY Sbjct: 153 NTVVSGPAGTGKSHLAMSILKDCLQHTDLTVIFASWSEVLHLIKDSFDNKDSFYSTEYFM 212 Query: 480 KRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKE 629 + + LLVIDDI EK + L L +T IITTN E Sbjct: 213 EVFRNTDLLVIDDI---GSEKITEWSMSLLTEVLDARTKTIITTNLKSDE 259 >ref|NP_862860.1|gp21 Length = 256 Score = 38.9 bits (89), Expect = 0.022 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Frame = -3 Query: 21651 NLILIGPSGTGKSYLAGGLCHEALKLGYH-ALFRTMDDLIQTIRFKEITAAAARE---YK 21484 N++ G +GTGKS+LA + + A+F + DL+ I+ A ++E Sbjct: 120 NIVFQGEAGTGKSHLAFAMMKYLSETTKEIAIFINVTDLLMKIK-----ADFSQEEFLVN 174 Query: 21483 RLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLG 21319 ++ SA LV+DD+ M EK L N L+++ + +ITTN + +E + G Sbjct: 175 KIASAKFLVLDDLGM---EKDSEWSFSILYNILNKRANTVITTNLTAQEIQKRYG 226 Score = 38.9 bits (89), Expect = 0.022 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Frame = +3 Query: 315 NLILIGPSGTGKSYLAGGLCHEALKLGYH-ALFRTMDDLIQTIRFKEITAAAARE---YK 482 N++ G +GTGKS+LA + + A+F + DL+ I+ A ++E Sbjct: 120 NIVFQGEAGTGKSHLAFAMMKYLSETTKEIAIFINVTDLLMKIK-----ADFSQEEFLVN 174 Query: 483 RLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLG 647 ++ SA LV+DD+ M EK L N L+++ + +ITTN + +E + G Sbjct: 175 KIASAKFLVLDDLGM---EKDSEWSFSILYNILNKRANTVITTNLTAQEIQKRYG 226 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 38.9 bits (89), Expect = 0.022 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 21651 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 21478 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 21477 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 21301 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 21300 ALLDRLLYKCEVIKLTGKSYR 21238 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 Score = 38.9 bits (89), Expect = 0.022 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = +3 Query: 315 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 488 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 489 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 665 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 666 ALLDRLLYKCEVIKLTGKSYR 728 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 >ref|NP_803371.1|dnaC Length = 259 Score = 38.9 bits (89), Expect = 0.022 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 21651 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 21478 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 21477 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 21301 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 21300 ALLDRLLYKCEVIKLTGKSYR 21238 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 Score = 38.9 bits (89), Expect = 0.022 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = +3 Query: 315 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 488 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 489 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 665 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 666 ALLDRLLYKCEVIKLTGKSYR 728 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 >ref|NP_958645.1|77ORF013 Length = 259 Score = 38.1 bits (87), Expect = 0.038 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 21651 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 21478 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 21477 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 21301 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 21300 ALLDRLLYKCEVIKLTGKSYR 21238 + R+ + +++ G +R Sbjct: 234 RINSRMKKRARKVRVIGDDFR 254 Score = 38.1 bits (87), Expect = 0.038 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = +3 Query: 315 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 488 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 489 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 665 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 666 ALLDRLLYKCEVIKLTGKSYR 728 + R+ + +++ G +R Sbjct: 234 RINSRMKKRARKVRVIGDDFR 254 >ref|NP_938213.1|A transposase Length = 690 Score = 36.2 bits (82), Expect = 0.14 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = -3 Query: 1341 LTAVIDWYSRKVLAWRLSNSLDSSFCVDCLEEAIRKYGMPEIFNTDQGTQYTS 1183 +T +ID +R++ W + + VD L +A K G+P IF D G+ Y + Sbjct: 285 ITTIIDIRTRRIPGWSTGLAESALVVVDALRDACIKGGVPAIFYVDNGSGYVN 337 >ref|NP_076651.1|DnaC Length = 294 Score = 35.0 bits (79), Expect = 0.32 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 11/146 (7%) Frame = -3 Query: 21654 FNLILIGPSGTGKSYLAGGLCHEA---LKLG-YHALFRTMDDLIQTIRFKEITAAAAREY 21487 FN + +G + GKS+LA + E LK + LF + +LI+ I+ + E Sbjct: 145 FNTVFVGGACRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNHSDTKAEE 204 Query: 21486 KRLL----SAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 21328 +RL + LLVIDD+ F + + G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNNWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 21327 MLGDEVLATALLDRLLYKCEVIKLTG 21250 D++++ + K VIK G Sbjct: 264 SYDDKIVSPIMEGS---KNSVIKFEG 286 Score = 35.0 bits (79), Expect = 0.32 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 11/146 (7%) Frame = +3 Query: 312 FNLILIGPSGTGKSYLAGGLCHEA---LKLG-YHALFRTMDDLIQTIRFKEITAAAAREY 479 FN + +G + GKS+LA + E LK + LF + +LI+ I+ + E Sbjct: 145 FNTVFVGGACRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNHSDTKAEE 204 Query: 480 KRLL----SAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 638 +RL + LLVIDD+ F + + G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNNWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 639 MLGDEVLATALLDRLLYKCEVIKLTG 716 D++++ + K VIK G Sbjct: 264 SYDDKIVSPIMEGS---KNSVIKFEG 286 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 115,817,410 Number of Sequences: 14420 Number of extensions: 2484078 Number of successful extensions: 7182 Number of sequences better than 0.5: 16 Number of HSP's better than 0.5 without gapping: 4651 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7161 length of database: 3,019,461 effective HSP length: 111 effective length of database: 1,418,841 effective search space used: 10207142154 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig49 (24,854 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_861745.1|RB69ORF055c hypothetical protein 93 1e-18 ref|YP_077221.1|Hypothetical protein 38 0.043 ref|NP_958681.1|Bbp12 36 0.21 >ref|NP_861745.1|RB69ORF055c hypothetical protein Length = 211 Score = 92.8 bits (229), Expect = 1e-18 Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 12/212 (5%) Frame = +1 Query: 16279 MISQPETAAIIDSGKNILEQEAQAIHRIADRLDDNFARAIALILSCK--------GKIIV 16434 M + P T AI + + ++A ++ +A + N AR A++ + + ++I+ Sbjct: 1 MKTTPITIAI-----DAIIKQASSLAAMAKVISQNPARYNAILETLRRPGLSNYESRVII 55 Query: 16435 SGMGKSGIIGQKIAATMASTGTTALFLHPADAAHGDLGIVCSGDIVICLSKSGTTEELNY 16614 +G+GK+ I K + T AS G +++L+ +HGD G + D++I +S+SG TEE+ Sbjct: 56 TGVGKNANIATKASETFASLGIPSMYLNTGHYSHGDAGFIAPNDVLIHISRSGKTEEMIG 115 Query: 16615 IIPALKKTGASIIALTGNSRSYLAKSADIVLD----TGIEQEACPYDLAPTTSTTAMLAM 16782 + LK ++ + + + + + + D TGI E LAPT STT +LA+ Sbjct: 116 VAKHLKMIRPNVKQILLHCNPDIPQENEALFDYSFCTGIAVEVDENSLAPTMSTTLLLAL 175 Query: 16783 GDALSMTLMQAKNFTPVDFALTHPKGSLGRRL 16878 D ++ L + FT DF HP G+LG L Sbjct: 176 IDTFAINLSSERGFTSNDFLKFHPGGALGAML 207 >ref|YP_077221.1|Hypothetical protein Length = 468 Score = 38.1 bits (87), Expect = 0.043 Identities = 59/269 (21%), Positives = 104/269 (38%), Gaps = 1/269 (0%) Frame = -3 Query: 15252 IANIIGSAVSGLMVFPVFMQLRPFFSFHQFRELIQIGLPYVPAGIAGLLIHLIDRNILIR 15073 +A ++ S L+V L F F+ L++ IA DR I++ Sbjct: 165 LAALVCDIYSFLIVIKSVSGLPFAFDKALFKRLVKESYALNLKSIASFFSTQGDRLIVVS 224 Query: 15072 ISSSDIERIYGEGYVASDILGIYGRVVAFGIILQLFIQVFRFAWQPFFLQHASDPDAKRL 14893 + + IY + +D+ G+ R V +++ +F A D R+ Sbjct: 225 LLGTYFLAIYQFAALLADVPGMILRAVNDSVLVS----------SSYF--KAKGADELRM 272 Query: 14892 FRYVLSISTLFTMVLALASTFFVPDLVRYHYADRFYLLPPRYWIGLSVLPWIFLSYVFDM 14713 R T+ T V A+ V LV + P Y L L + LS++F + Sbjct: 273 SRLTFKAVTILTFVTAIVFLVLVRFLVPAFF--------PAYKASLDALSILSLSFIFSI 324 Query: 14712 ISTNLTAGLL-ITGNTRSLPMVTFSGALVTSLVCWALVPVNGMEGAAYAIVAGTFVMCLV 14536 LT ++ + R +++ A++ L ALVP G+ GAA + + V ++ Sbjct: 325 PFLVLTQFIISYKRDLRLFTLISLIDAVLVVLTSIALVPRLGILGAAISQLIVAVVNNVL 384 Query: 14535 MAYYSLKFYPNRYDWLKLSLLLAVGGVFA 14449 YSL + +L L+ + +FA Sbjct: 385 NLLYSLHVKVFKVGKKELLLMAMMPVIFA 413 >ref|NP_958681.1|Bbp12 Length = 231 Score = 35.8 bits (81), Expect = 0.21 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 10/148 (6%) Frame = +1 Query: 23734 IDLGYSSGFTAVGAVGCDYGSTRLEAEVGYQTNDIDSITGSFDGDSASLALSGNAKVLSL 23913 + LG S+ G VG YG+ ++ + +Q+N G + ++ ++ GNA ++ Sbjct: 8 VALGASAASMGSGLVGSYYGARSQQSSLQFQSNIARINAGIANTNADTIESIGNANADAI 67 Query: 23914 MANGFYDFDLGGVELYAMAGIGVAQVSINDLT-----LADTNDLGISADDID-----DAN 24063 +A G DF+ EL A + + Q I T L ++A+ ID A Sbjct: 68 LATG--DFNASIAELGAQSALEAGQQQIAAQTLKAGQLKGAQRAALAANGIDLGEGSAAE 125 Query: 24064 EYLSRRLGAPVDLNALGLNVNETTLAYQ 24147 +S + +D + L N T Y+ Sbjct: 126 VQVSSDIVKQIDTDTLRANAARTAWGYR 153 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 125,062,645 Number of Sequences: 14420 Number of extensions: 2602527 Number of successful extensions: 7745 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 5000 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7741 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 11476928412 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig50 (26,772 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818206.1|gp133 44 0.001 ref|NP_050160.1|hypothetical protein 44 0.001 ref|YP_112541.1|modification methylase 37 0.10 ref|YP_006598.1|Gp18 36 0.23 ref|NP_046914.1|gp19 35 0.39 >ref|NP_818206.1|gp133 Length = 948 Score = 43.5 bits (101), Expect = 0.001 Identities = 28/88 (31%), Positives = 45/88 (51%) Frame = -1 Query: 10203 LGIRYRYGGTTTEGFDCSGLVMHLFRETFQMQLPRTAAEQSSLGSTIPKNRLKPGDLVFF 10024 +G Y +G T +DCSGL++ +R + +++ RT ++ + +TIP L PGDL+ Sbjct: 523 IGRPYVWGATGPASYDCSGLMLAAYR-SIGIEIGRTTYDEVATCTTIPPTNLVPGDLI-Q 580 Query: 10023 STEGKVIDHVGIVLDNNRFAHAATRGGV 9940 +G V+ G N HA G V Sbjct: 581 PHDGHVVMWTG----NGTVVHAPQTGDV 604 >ref|NP_050160.1|hypothetical protein Length = 1487 Score = 43.5 bits (101), Expect = 0.001 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Frame = -1 Query: 10200 GIRYRYGGTTTEGFDCSGLVMHLFRETFQMQLPRTAAEQSSLGSTIPKNRLKPGDLVFFS 10021 G Y +G + FDCSGLV + P + +Q ++ + ++ GDLVFF Sbjct: 1102 GKPYVWGSEGPDSFDCSGLVKYSLERQSVKSFPHYSGDQYAMSRGVKDPQI--GDLVFFG 1159 Query: 10020 TEGKVIDHVGIVLDNNR-FAHAATRGGVTISKLSE 9919 G+ +HVG+ N + ++ + R G+ + +S+ Sbjct: 1160 PGGR--NHVGVYAGNGKVWSARSPRSGIGMDNVSD 1192 >ref|YP_112541.1|modification methylase Length = 216 Score = 37.0 bits (84), Expect = 0.10 Identities = 14/28 (50%), Positives = 21/28 (75%) Frame = +1 Query: 7150 NVAIKNDDSISLLATYPDDFFDWIFVDP 7233 N+ I N+D++ L+A YPD++FD VDP Sbjct: 6 NIEITNEDNMLLMARYPDNYFDLAIVDP 33 >ref|YP_006598.1|Gp18 Length = 236 Score = 35.8 bits (81), Expect = 0.23 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 16/83 (19%) Frame = -1 Query: 10161 FDCSGLVMHLFRETFQMQLPRTAAEQSSLGSTIPKNRL----------------KPGDLV 10030 +DC GLVM FR+T ++L + + P N +PGD+V Sbjct: 124 YDCWGLVMSYFRQTHGIELHDYRVDYPWWENNYPDNFYHDCWYECGFREFDGPPQPGDMV 183 Query: 10029 FFSTEGKVIDHVGIVLDNNRFAH 9961 + +H GI+L+ N H Sbjct: 184 IMQVQSDKWNHAGILLEGNMLLH 206 >ref|NP_046914.1|gp19 Length = 243 Score = 35.0 bits (79), Expect = 0.39 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 16/83 (19%) Frame = -1 Query: 10161 FDCSGLVMHLFRETFQMQLPRTAAEQSSLGSTIPKNRL----------------KPGDLV 10030 FDC GLVM FR+T ++L + ++ P N + GDLV Sbjct: 124 FDCWGLVMSYFRQTHGIELHDYRVDYPWWENSYPDNFYQDCWYECGFREFDGPPQEGDLV 183 Query: 10029 FFSTEGKVIDHVGIVLDNNRFAH 9961 + +H GI+L+ N H Sbjct: 184 IMQVQADKWNHAGILLEGNMLLH 206 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 136,329,650 Number of Sequences: 14420 Number of extensions: 2891797 Number of successful extensions: 9325 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 5461 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9313 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 12374353431 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig51 (24,419 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_944261.1|putative TnpA transposase 87 8e-17 ref|NP_945285.1|scaffolding protein 37 0.094 ref|NP_064745.1|gp7 37 0.12 ref|NP_076659.1|Orf5 37 0.12 ref|YP_024840.1|Pas54 36 0.21 ref|YP_044803.1|Mem 35 0.36 >ref|NP_944261.1|putative TnpA transposase Length = 482 Score = 87.0 bits (214), Expect = 8e-17 Identities = 87/385 (22%), Positives = 163/385 (42%), Gaps = 10/385 (2%) Frame = +2 Query: 22214 GKQIEIRLVYTDKQAECPECGQLCKIYDHTSEQQ-WRHLDTMQFETIIVARLPRCKCKEH 22390 G + I YT C +CG + ++Y H + +R I A R +C++ Sbjct: 19 GDEYIISADYTVLPEACQKCGVIGRVYKHGPKMIIFRDSPIRGRPVSIEANAQRFRCRDC 78 Query: 22391 GVKTVRVPWAARH--SRFTLMFESFAIELLMHCSSIKAASSMLNLNWHAVDEIMRRAVKR 22564 G ++ P H +R T + E + + + A + D+ +R Sbjct: 79 GGTFIQ-PLGGIHPATRMTARCVQYIEEQCLRDTFTRIAEHV-----GCDDKTVRTLAGD 132 Query: 22565 GLNRRESEAIAYL----GIDEKSFKAGQHYVTTLNDLDKGRVLEVVEHRTNEAAKALLES 22732 ++R +E +L GIDE + T D+ ++++ R A L Sbjct: 133 YIDRLNAEYTPWLPEWLGIDETQIDGKLRCIIT--DVVNRVPIDMLPDRDKPLVTAWLHQ 190 Query: 22733 LNKKQQEQVKAVSADMWKPYANAVEELLPNADLVHDRFHISKYLSEAVDAVRRKESRELD 22912 K++ VK ++ DMWKPY +A + + P +V D+FH+ + + A+D +R +++ + Sbjct: 191 F--KERGGVKGLAIDMWKPYKDAAQSVFPGLPVVVDKFHLVRMANRAMDDIRITLAKDQE 248 Query: 22913 QAGDKRLVGSKYVWLRNPENMREQQKVELSNLMACEFKTSQAWALKNMFRYFWQLGDTDG 23092 +A + + K + +N+ EQ + L + E + A+ LK F + Sbjct: 249 KAVGRDWMRRKALLRMRYKNLDEQGRFNLQMWLDNEPHVAIAYGLKEAFYDIYDAPSRAE 308 Query: 23093 ASFFFEYWSRRVD---EVGLTPLIDVKELLQRHFDHILTYFKHAITNAVSEGLNSKIQIV 23263 A + W + V G + + + + +L YF H I+N +E LN +++ Sbjct: 309 AEERLDAWRKSVPADMRKGKKSFMPLLTSTRNWREEMLAYFDHPISNGYTEALNGVAKVI 368 Query: 23264 KASARGFHRFESYRNRILFYCGKLN 23338 + RG+ FE R R+L+ GKL+ Sbjct: 369 NRAGRGY-SFEVLRARLLY--GKLH 390 >ref|NP_945285.1|scaffolding protein Length = 193 Score = 37.0 bits (84), Expect = 0.094 Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 3/115 (2%) Frame = +1 Query: 2161 ELKVSEVNQEWKKKRREFDQEVVIKNNKFNQMQKQVLQKE---GQLKKQSQDLRDMERKL 2331 E ++S+V + ++F +V K ++ ++ Q+ Q++ LKK+ D+ D+++KL Sbjct: 13 EDQISQVFALYGASVQKFKDDVASKESELESVRGQLTQRDKDLNDLKKKGADVEDIQQKL 72 Query: 2332 QDQRKEIEQTMETVNLRSSELERITLEQNQRLESISNLQADEARQMLVDNMLAKA 2496 +D + + +Q E + ++ ADE + L+D L KA Sbjct: 73 EDLQAKYKQDTEALEMK---------------------LADENKSRLIDAELTKA 106 >ref|NP_064745.1|gp7 Length = 540 Score = 36.6 bits (83), Expect = 0.12 Identities = 39/174 (22%), Positives = 66/174 (37%), Gaps = 3/174 (1%) Frame = -1 Query: 10211 TAVTRRAAFSSKAHGNRTASDTGSGTGCRDIETAITATAAYRLRKNTCRIITFRDDGSVC 10032 T+ T A + A + TAS T + A T+ +A + + S Sbjct: 117 TSATNAGASETAASASATASATSATNSATSASQAATSASAAAVSEGNAATSETNAANSAT 176 Query: 10031 FGRGNITAIIPGTSAAAKTDGHRTASDTGTGTGCIDIEAPVSAAAAYRLCHKA--IGVIF 9858 G+ + SAA+ + + S + T + A +AAA A V Sbjct: 177 SASGSASTATTQASAASVSATNAATSASNAATSATNAAASQAAAATSETNAAASESTVTT 236 Query: 9857 LRGNRTLNQGSHHTACSPVSAAASETDGHSSTADT-GTRTSASQIEAAVSATAA 9699 N ++ + T+ S + A+ +STA T T + S+ AA SA++A Sbjct: 237 SATNAATSEANAATSASTATTQATNAATSASTASTSATNAATSETNAASSASSA 290 >ref|NP_076659.1|Orf5 Length = 169 Score = 36.6 bits (83), Expect = 0.12 Identities = 25/121 (20%), Positives = 51/121 (42%) Frame = +1 Query: 2131 EAQKEANEYKELKVSEVNQEWKKKRREFDQEVVIKNNKFNQMQKQVLQKEGQLKKQSQDL 2310 E K+AN + ++NQ NN+ NQ++ Q+ Q L+ Q+ Sbjct: 54 EQLKQANNSSQQYADQLNQ---------------LNNRINQLKDQINQDNSNLQNQAASY 98 Query: 2311 RDMERKLQDQRKEIEQTMETVNLRSSELERITLEQNQRLESISNLQADEARQMLVDNMLA 2490 ++ L Q++E+ + + N + + + + N +L + + + DE Q + D Sbjct: 99 QNQLNVLNQQKEEVARQLNQANQDKANMAQQISDLNSKL-TAAQQKTDELSQAVTDAQQT 157 Query: 2491 K 2493 K Sbjct: 158 K 158 >ref|YP_024840.1|Pas54 Length = 216 Score = 35.8 bits (81), Expect = 0.21 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 3/139 (2%) Frame = +1 Query: 2095 LEAEERAVQIVQEAQKEANEYKELKVSEVNQEWKKKR---REFDQEVVIKNNKFNQMQKQ 2265 LEA+ R ++ +E ++KE E++QE ++ R RE+D++ + ++ ++M Q Sbjct: 83 LEAQVRRLEATLAESRELVQFKEKVADEIDQEAERLRSKVREYDRDRKTERDRADRMTAQ 142 Query: 2266 VLQKEGQLKKQSQDLRDMERKLQDQRKEIEQTMETVNLRSSELERITLEQNQRLESISNL 2445 +++ R E+E R +L RL + Sbjct: 143 A------------------NRMETDRAELEAE-----------HRRSLAARDRLLETATR 173 Query: 2446 QADEARQMLVDNMLAKARE 2502 +A AR L N +A+ARE Sbjct: 174 KASAARDFLSTNTVAEARE 192 >ref|YP_044803.1|Mem Length = 215 Score = 35.0 bits (79), Expect = 0.36 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 5/96 (5%) Frame = +1 Query: 2230 IKNNKFNQMQKQV----LQKEGQLKKQSQDLRDMERKLQDQRKEIEQTMETVN-LRSSEL 2394 ++NN Q K + LQ + +L ++ L +E +QRKEIE+ E + L+S + Sbjct: 40 LQNNNLKQENKDIRFELLQTQKELADKNNSLSKLEVMFDNQRKEIERLSEELKALQSGNV 99 Query: 2395 ERITLEQNQRLESISNLQADEARQMLVDNMLAKARE 2502 + + + +++E++ N + Q V N+ A+ E Sbjct: 100 DPLVKKLKEQIENLVNEKKQLTEQ--VYNVKAELNE 133 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,123,652 Number of Sequences: 14420 Number of extensions: 2114785 Number of successful extensions: 6501 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 4414 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6490 length of database: 3,019,461 effective HSP length: 111 effective length of database: 1,418,841 effective search space used: 11390455548 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig52 (28,073 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_195210.1|virion structural protein 47 1e-04 ref|NP_038305.1|ORF5 45 3e-04 ref|YP_024980.1|major tail subunit 44 9e-04 ref|YP_195258.1|hypothetical protein 44 0.001 ref|NP_570367.1|collagen alpha 1(I) chain precursor 41 0.006 ref|NP_116510.1|unknown 41 0.007 ref|NP_839903.1|putative DnaC protein 40 0.010 ref|YP_024421.1|Hypothetical protein 40 0.013 ref|NP_076710.1|DnaC 40 0.013 ref|NP_061611.1|orf 21 39 0.022 ref|NP_695040.1|putative replication protein DnaC 39 0.022 ref|NP_862860.1|gp21 39 0.028 ref|NP_075485.1|hypothetical protein 39 0.028 ref|NP_803371.1|dnaC 39 0.028 ref|NP_958645.1|77ORF013 38 0.048 ref|NP_817998.1|gp25 37 0.082 ref|NP_944342.1|gp33 37 0.082 ref|YP_195253.1|hypothetical protein 37 0.082 ref|YP_164733.1|orf98 37 0.14 ref|NP_943810.1|gp32 35 0.31 ref|NP_817363.1|gp25 35 0.31 ref|NP_076691.1|host-specificity 35 0.31 ref|NP_818345.1|gp44 35 0.41 ref|NP_818208.1|gp135 35 0.41 ref|NP_958546.1|putative protein 35 0.41 ref|NP_542581.1|hypothetical protein 35 0.41 ref|NP_076651.1|DnaC 35 0.41 >ref|YP_195210.1|virion structural protein Length = 1177 Score = 46.6 bits (109), Expect = 1e-04 Identities = 74/306 (24%), Positives = 115/306 (37%), Gaps = 5/306 (1%) Frame = +2 Query: 2567 GTGNDLDNRITGNSGKNTLVGGAGNDTLDGGSGADNMAGGIGDDTYVVNYSLDVVTENAG 2746 G+G D +T +G N + AGND S DT + V NA Sbjct: 141 GSGTSTDQDVTLVAGTNVSLTRAGNDIQISSSFT---------DTDTITTLRSAVGGNAT 191 Query: 2747 EGTDLVQSSTGWTLGANVEQLELTGMANARGTGNELDNRITGNIGSNMLAGD----AGKD 2914 G + S T+ +V+ L +T T + R+ G G N LAGD AG + Sbjct: 192 SGDISIAGSGSTTVSQSVDGLTIT----IDSTDTDTITRLRGGTGENFLAGDFTLIAGDE 247 Query: 2915 TLLGGAGND-TLDGGTGADSMAGGIGDDIYVVNYSLDVVTENADEGIDLVQSSTGWTLGA 3091 L G D T++ + GG ++ VT + QS G T+ Sbjct: 248 VTLSQTGRDITINSVDTITRLKGGA-----TGSFKSGDVTFTGSGATTVSQSQDGSTI-- 300 Query: 3092 NLENLELTGTANTRGTGNDHDNRITGNSGKNTLTGGAGNDTLDGGTGADSMAGGIGNDTY 3271 +++++ T T RI G++G TLT G D G+G ++ T Sbjct: 301 TIDSID-TNTI----------TRIRGSNG-GTLTSG---DVTFLGSGVTTVEQSPDGRTI 345 Query: 3272 VVNYSLDVVTENADEGVDLVQSSVSWTLGANIENLELISTGNTRGTGNDLNNRITGNIGK 3451 ++ + T +A L S S++L N EN+ + + L N I + G Sbjct: 346 TISSTDQDTTYDAALSGGLFLSGTSFSL-KNNENINDQTIVKWDSSNFQLTNSIITDDGS 404 Query: 3452 NTLVGG 3469 +GG Sbjct: 405 TVTIGG 410 Score = 42.7 bits (99), Expect = 0.002 Identities = 80/370 (21%), Positives = 126/370 (34%), Gaps = 10/370 (2%) Frame = +2 Query: 2660 SGADNMAGGIGDDTYVVNYSLDVVTENAGEGTDLVQSSTGWTLGA----NVEQLELTGMA 2827 SG +N IG+D+ + N S+ + + G + + T T + T Sbjct: 79 SGTENALSNIGNDS-LENSSITINGTSIPLGGSVTTADTNTTYSFAAVDGTTDVRKTIRL 137 Query: 2828 NARGTGNELDNRITGNIGSNMLAGDAGKDTLLGGAGNDTLDGGTGADSMAGGIGDDIYVV 3007 + G+G D +T G+N+ AG D + + DT D T S GG Sbjct: 138 TSGGSGTSTDQDVTLVAGTNVSLTRAGNDIQISSSFTDT-DTITTLRSAVGG-------- 188 Query: 3008 NYSLDVVTENADEGIDLVQSSTGWTLGANLENLELTGTANTRGTGNDHDNRITGNSGKNT 3187 NA G + S T+ +++ L +T T D R+ G +G+N Sbjct: 189 ---------NATSGDISIAGSGSTTVSQSVDGLTIT----IDSTDTDTITRLRGGTGENF 235 Query: 3188 LTGG----AGNDTLDGGTGADSMAGGIGNDTYVVNYSLDVVTENADEGVDLVQSSVSWTL 3355 L G AG++ TG D + S+D +T +S Sbjct: 236 LAGDFTLIAGDEVTLSQTGRD-----------ITINSVDTITRLKGGATGSFKSGDVTFT 284 Query: 3356 GANIENLELISTGNTRGTGNDLNNRITGNIGKN--TLVGGAGNDTLXXXXXXXXXXXXXX 3529 G+ + G+T + N IT G N TL G D Sbjct: 285 GSGATTVSQSQDGSTITIDSIDTNTITRIRGSNGGTLTSG---DVTFLGSGVTTVEQSPD 341 Query: 3530 XXXYVVNSSGDVVTENADEGIDLVQSSISWTLSPNVENLELTGTANARGTGNDLDNRITG 3709 ++S+ T +A L S S++L N EN+ + L N I Sbjct: 342 GRTITISSTDQDTTYDAALSGGLFLSGTSFSLKNN-ENINDQTIVKWDSSNFQLTNSIIT 400 Query: 3710 NSGKNTLVGG 3739 + G +GG Sbjct: 401 DDGSTVTIGG 410 >ref|NP_038305.1|ORF5 Length = 260 Score = 45.4 bits (106), Expect = 3e-04 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Frame = +2 Query: 80 NFNLILIGPSGTGKSYLAGGLCHEALK-LGYH----ALFRTMDDLIQTIRFKEITAAAAR 244 ++N++LIG +G GKS+LA + ALK L H +F + DL+ I KE A Sbjct: 119 DYNIVLIGNTGVGKSHLA----YSALKALSDHTKKMGVFINVVDLLAKI--KEDFNLEAE 172 Query: 245 EYKRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDE 424 +R+ A LV+DD+ EK L + L+++T IITTN SP++ G Sbjct: 173 YIRRISEAEWLVLDDL---GTEKVTEWSSGILYSILNKRTKTIITTNLSPQDILGTYGKR 229 Query: 425 V 427 V Sbjct: 230 V 230 >ref|YP_024980.1|major tail subunit Length = 743 Score = 43.9 bits (102), Expect = 9e-04 Identities = 49/167 (29%), Positives = 65/167 (38%), Gaps = 9/167 (5%) Frame = +2 Query: 2519 GANLENLELTGTANTR------GTGNDLDNRITGNSGKNTLVGGAGNDTLDGGSGADNMA 2680 GA + L TG R G+GN GN+ NT GGAG + +GG+G + Sbjct: 576 GAGIIGLSWTGGKGGRSGYRSDGSGNGAFGGAGGNNSANT-GGGAGGVSSNGGNGVNGGG 634 Query: 2681 GGIGDDTYVVNYSLDVVTENAGEGTDLVQSSTGWTLGANVEQLELTGMANARGTGNEL-- 2854 GG G + D+V G G G G + + T + G GN Sbjct: 635 GGGGSNN-------DLVLRRGGNG-------GGSNGGIGGQGVGTTDGPSGGGGGNSAVW 680 Query: 2855 -DNRITGNIGSNMLAGDAGKDTLLGGAGNDTLDGGTGADSMAGGIGD 2992 DN G G N + G++G T GN GG G GG+ D Sbjct: 681 WDNADAGR-GGNGVTGNSGNQTGGHATGNGNGGGGGG-----GGVPD 721 Score = 35.8 bits (81), Expect = 0.24 Identities = 61/245 (24%), Positives = 90/245 (36%), Gaps = 21/245 (8%) Frame = +2 Query: 2804 QLELTGMANARGTGNELDNRITGNIGSNMLAGDAGKDTLLGGAGNDTLDGGTGADSMAGG 2983 Q++ G G+G+ + +TG G G L+ ++ + G T + GG Sbjct: 502 QVQGCGGGGGGGSGDAIGTELTGG-------GGGGGAALVSVLSSNAIGGQTATIVIGGG 554 Query: 2984 IGDDIYVVNYSLDVVTENADEGIDLVQSSTGWTLGANLENLELTGTANTR------GTGN 3145 + +V T G + S GA + L TG R G+GN Sbjct: 555 GAG-------APNVGTTFGGNGGNTSVS------GAGIIGLSWTGGKGGRSGYRSDGSGN 601 Query: 3146 DHDNRITGNSGKNTLTGGAGNDTLDGGTGADSMAGGIGNDTYVV----------NYSL-- 3289 GN+ NT GGAG + +GG G + GG G++ +V N + Sbjct: 602 GAFGGAGGNNSANT-GGGAGGVSSNGGNGVNGGGGGGGSNNDLVLRRGGNGGGSNGGIGG 660 Query: 3290 -DVVTENADEGVDLVQSSVSWTLGANIENLELISTGN--TRGTGNDLNNRITGNIGKNTL 3460 V T + G S+V W +N + GN T +GN TGN G Sbjct: 661 QGVGTTDGPSGGGGGNSAVWW------DNADAGRGGNGVTGNSGNQTGGHATGN-GNGGG 713 Query: 3461 VGGAG 3475 GG G Sbjct: 714 GGGGG 718 >ref|YP_195258.1|hypothetical protein Length = 582 Score = 43.5 bits (101), Expect = 0.001 Identities = 93/399 (23%), Positives = 139/399 (34%), Gaps = 34/399 (8%) Frame = +2 Query: 2612 KNTLVGGAGNDTLDGGSGADNMAGGIGDDTYVVNYSLDVVTENAGEGTDLVQSSTGWT-- 2785 +N +V AG GG+ + GG GD Y + +S+ + N G S G+T Sbjct: 23 QNIVVAVAGARGGTGGADSGGPGGGYGDGRYGL-FSIPSSSSNRSWG-----SWVGFTGS 76 Query: 2786 LGANVEQLELTGMANARGTGNELDNRITGNIGSNMLAG---DAGKDTLLGGAGNDTLDGG 2956 G + G + G G D GN G + +G G T+ AG+D + G Sbjct: 77 NGPGGSSAVVGGPGGSNGAGKNGDGGRGGNDGESGWSGCGAGGGAATVFSLAGSDVIVAG 136 Query: 2957 TGADSMAGGI------------GDDIYVVNYSLDVVTENADEGIDLVQSSTGWTLGANLE 3100 G G GD VN + + N +G D G G Sbjct: 137 GGGGGGGGAFSCGGPERPGARGGDAGNWVN-TTSISPSNGGQGGDKSGDGPGGGGGGG-- 193 Query: 3101 NLELTGTANTRGTGNDHDNRITGNSGKNTLTGGAGNDTLDGGT-GADSMAGGIGNDTYVV 3277 G G G D +G +G GG G +G S + IGN + Sbjct: 194 -----GAPGGGGGGVGQD--CSGGAGG----GGGGGSRYNGSVLSLTSTSTNIGNGYISL 242 Query: 3278 NYSL---DVVTENADEGVDLVQSSVSWTLGANIENLELIST--GNTRGTGNDLNNRITGN 3442 +Y L ++ T + D + S + N + I+ G+ +G+ + + Sbjct: 243 SYDLTVAEITTFSIDPNTIIAGESATLEWSVTDSNSQSINQDIGSVATSGSLIVSPSVTT 302 Query: 3443 IGKNTLVGGAGNDT----LXXXXXXXXXXXXXXXXXYVVNSS-------GDVVTENADEG 3589 T +G AGNDT L V +S GD + D+G Sbjct: 303 DYTLTAIGDAGNDTATVTLTVYQPVVATITASPNPVIVGQNSTLSWTVTGDASEASIDQG 362 Query: 3590 IDLVQSSISWTLSPNVENLELTGTANARGTGNDLDNRIT 3706 I V S S T+SP+ T T +A G G + +T Sbjct: 363 IGPVLFSSSTTISPSTTT---TYTLSASGLGGADQDSVT 398 >ref|NP_570367.1|collagen alpha 1(I) chain precursor Length = 302 Score = 41.2 bits (95), Expect = 0.006 Identities = 66/296 (22%), Positives = 96/296 (32%), Gaps = 1/296 (0%) Frame = +2 Query: 2597 TGNSGKNTLVGGAGNDTLDGGSGADNMAGGIGDDTYVVNYSLDVVTENAGEGTDLVQSST 2776 TG G L G G G GAD G G +G +Q Sbjct: 36 TGPQGPQGLQGEQGLQGPQGLPGADGADGAQGPQGI--------------QGEQGLQGPQ 81 Query: 2777 GWTLGANVEQLELTGMANARGTGNELDNRITGNIGSNMLAGDAGKDTLLGGAGNDTLDGG 2956 G GA+ + G +G ++ D G G GDAG L G GND DG Sbjct: 82 GLP-GADGADSTVPGPQGPKG--DKGDTGDAGPQGPKGDTGDAGPQGLKGDPGNDGADGA 138 Query: 2957 TGADSMAGGIGDDIYVVNYSLDVVTENADEGIDLVQSSTGWTLGANLENLELTGTANTRG 3136 TG + G G+ +G D Q G + TG +G Sbjct: 139 TGPEGPQGPQGNP--------------GADGADGAQGPKG--------DKGDTGDPGAQG 176 Query: 3137 -TGNDHDNRITGNSGKNTLTGGAGNDTLDGGTGADSMAGGIGNDTYVVNYSLDVVTENAD 3313 GN D GN G + G G + G G + G + V+ + D+ + Sbjct: 177 PQGNPGDQGPQGNPGADGADGAIGPEGPQGPQGPEGPEGPMSTAALTVDINSDIAS---- 232 Query: 3314 EGVDLVQSSVSWTLGANIENLELISTGNTRGTGNDLNNRITGNIGKNTLVGGAGND 3481 ++ + G+N + + G+ L N + G + T +G D Sbjct: 233 -----ASRAIIYAPGSN-------GQASLKYNGSFLINPLNGTLTAPTFIGDLTGD 276 >ref|NP_116510.1|unknown Length = 1904 Score = 40.8 bits (94), Expect = 0.007 Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 17/199 (8%) Frame = +2 Query: 2636 GNDTLDGGSGADNMAG--GIGDDTYVVNYSLDVVTENAGEGTDLVQSSTGWTLGANV--- 2800 GND DG +G D +AG G+G T V+ Y+L + GTD + +TGWT Sbjct: 850 GNDGKDGATGKDGVAGKDGVGIKTTVITYAL------SSSGTD--KPNTGWTSQVPTLVK 901 Query: 2801 -EQLELTGMANARGTGNELDNRIT-----GNIGSNMLAGDAG----KDTLLGGAG-NDTL 2947 + L + + +E +T GN G++ +AG G K T+ G + T Sbjct: 902 GQYLWTKTVWTYTDSSSETGYSVTYIAKDGNNGNDGIAGKDGVGIKKTTITYAVGTSGTT 961 Query: 2948 DGGTGADSMAGGIGDDIYVVNYSLDVVTENADEGIDLVQSSTGWTLGANLENLELTGTAN 3127 +G +S + ++ ++ T+N E TG+++ + G Sbjct: 962 APASGWNSQVPNVPAGQFLWTKTVWTYTDNTSE--------TGYSVA-------MMGVKG 1006 Query: 3128 TRG-TGNDHDNRITGNSGK 3181 +G GN+ N I G GK Sbjct: 1007 DKGDPGNNGTNGIAGKDGK 1025 Score = 35.8 bits (81), Expect = 0.24 Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 26/199 (13%) Frame = +2 Query: 2933 GNDTLDGGTGADSMAG--GIGDDIYVVNYSLDVVTENADEGIDLVQSSTGW--------- 3079 GND DG TG D +AG G+G V+ Y+L + G D + +TGW Sbjct: 850 GNDGKDGATGKDGVAGKDGVGIKTTVITYAL------SSSGTD--KPNTGWTSQVPTLVK 901 Query: 3080 -------TLGANLENLELTGTANT--RGTGNDHDNRITGNSG----KNTLTGGAG-NDTL 3217 T+ ++ TG + T GN+ ++ I G G K T+T G + T Sbjct: 902 GQYLWTKTVWTYTDSSSETGYSVTYIAKDGNNGNDGIAGKDGVGIKKTTITYAVGTSGTT 961 Query: 3218 DGGTGADSMAGGIGNDTYVVNYSLDVVTENADE-GVDLVQSSVSWTLGANIENLELISTG 3394 +G +S + ++ ++ T+N E G + V G Sbjct: 962 APASGWNSQVPNVPAGQFLWTKTVWTYTDNTSETGYSVAMMGVK---------------G 1006 Query: 3395 NTRGTGNDLNNRITGNIGK 3451 + GN+ N I G GK Sbjct: 1007 DKGDPGNNGTNGIAGKDGK 1025 >ref|NP_839903.1|putative DnaC protein Length = 294 Score = 40.4 bits (93), Expect = 0.010 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%) Frame = +2 Query: 83 FNLILIGPSGTGKSYLAGGLCHEA---LKLG-YHALFRTMDDLIQTIR----FKEITAAA 238 FN + +G +G GKS+LA + E LK + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 239 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 409 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 410 MLGDEVLA 433 D++++ Sbjct: 264 SYDDKIVS 271 >ref|YP_024421.1|Hypothetical protein Length = 741 Score = 40.0 bits (92), Expect = 0.013 Identities = 62/249 (24%), Positives = 88/249 (35%), Gaps = 32/249 (12%) Frame = +2 Query: 2627 GGAGNDTLDGGSGADNMAGGIGDDTYVVNYSLDVVTENAGEGTDLVQSSTGWTLGANVEQ 2806 GG G+ GG+ D++ GG G +V+ V++ NA G G GA Sbjct: 510 GGGGSGRTAGGN--DSIGGGGGGGAALVS----VLSSNAIGGQTATIVVGGGGGGA---- 559 Query: 2807 LELTGMANARGTGNELDNRITGNIGSNMLAGDAGKDTLLG------GAGNDTLDGGTGAD 2968 A A G G G +G + G AG + + G GN++ + G GA Sbjct: 560 ---ANRAIAAGNGGNSSVSGAGIVGLSWTGGRAGANGVQGYYASGGNGGNNSSNVGAGAG 616 Query: 2969 SMAGGIGDDIYVVNYSLDVVTENADEGIDLVQSSTGWTLGANLENLELTGTANTR----- 3133 + +G + + G + GW G + GT+N Sbjct: 617 ASSGNAASGV------------SGGGGGGTGPGNGGWRSGNGGGSNAGVGTSNGNNAQAA 664 Query: 3134 ---GTGNDH---DNRITGNSGKNTLTGGA--GNDTLDG-------------GTGADSMAG 3250 G GN DN G G T + GA GN T +G G G D AG Sbjct: 665 GGGGGGNSAVWWDNAAAGKGGDGTASSGASGGNATGNGNGGGGGSGGTSILGNGTDGSAG 724 Query: 3251 GIGNDTYVV 3277 G G+ V+ Sbjct: 725 GNGSGGKVI 733 >ref|NP_076710.1|DnaC Length = 294 Score = 40.0 bits (92), Expect = 0.013 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 11/128 (8%) Frame = +2 Query: 83 FNLILIGPSGTGKSYLAGGLCHEALKL----GYHALFRTMDDLIQTIR----FKEITAAA 238 FN + +G +G GKS+LA + E + + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDDKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 239 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 409 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 410 MLGDEVLA 433 D++++ Sbjct: 264 SYDDKIVS 271 >ref|NP_061611.1|orf 21 Length = 257 Score = 39.3 bits (90), Expect = 0.022 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = +2 Query: 86 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 259 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 118 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIQMLMDRIKAAYNKNAVETTDELVRL 177 Query: 260 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 436 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 178 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 231 Query: 437 ALLDRLLYKCEVIKLTGKSYR 499 + R+ + +++ G +R Sbjct: 232 RINSRMKHNARKVRVIGDDFR 252 >ref|NP_695040.1|putative replication protein DnaC Length = 296 Score = 39.3 bits (90), Expect = 0.022 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 5/110 (4%) Frame = +2 Query: 86 NLILIGPSGTGKSYLAGGLCHEALK-LGYHALFRTMDDLIQTIR--FKEITAAAAREY-- 250 N ++ GP+GTGKS+LA + + L+ +F + +++ I+ F + + EY Sbjct: 153 NTVVSGPAGTGKSHLAMSILKDCLQHTDLTVIFASWSEVLHLIKDSFDNKDSFYSTEYFM 212 Query: 251 KRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKE 400 + + LLVIDDI EK + L L +T IITTN E Sbjct: 213 EVFRNTDLLVIDDI---GSEKITEWSMSLLTEVLDARTKTIITTNLKSDE 259 >ref|NP_862860.1|gp21 Length = 256 Score = 38.9 bits (89), Expect = 0.028 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Frame = +2 Query: 86 NLILIGPSGTGKSYLAGGLCHEALKLGYH-ALFRTMDDLIQTIRFKEITAAAARE---YK 253 N++ G +GTGKS+LA + + A+F + DL+ I+ A ++E Sbjct: 120 NIVFQGEAGTGKSHLAFAMMKYLSETTKEIAIFINVTDLLMKIK-----ADFSQEEFLVN 174 Query: 254 RLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLG 418 ++ SA LV+DD+ M EK L N L+++ + +ITTN + +E + G Sbjct: 175 KIASAKFLVLDDLGM---EKDSEWSFSILYNILNKRANTVITTNLTAQEIQKRYG 226 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 38.9 bits (89), Expect = 0.028 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = +2 Query: 86 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 259 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 260 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 436 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 437 ALLDRLLYKCEVIKLTGKSYR 499 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 >ref|NP_803371.1|dnaC Length = 259 Score = 38.9 bits (89), Expect = 0.028 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = +2 Query: 86 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 259 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 260 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 436 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 437 ALLDRLLYKCEVIKLTGKSYR 499 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 >ref|NP_958645.1|77ORF013 Length = 259 Score = 38.1 bits (87), Expect = 0.048 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = +2 Query: 86 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 259 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 260 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 436 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 437 ALLDRLLYKCEVIKLTGKSYR 499 + R+ + +++ G +R Sbjct: 234 RINSRMKKRARKVRVIGDDFR 254 >ref|NP_817998.1|gp25 Length = 941 Score = 37.4 bits (85), Expect = 0.082 Identities = 45/139 (32%), Positives = 55/139 (39%), Gaps = 16/139 (11%) Frame = +2 Query: 2624 VGGAGNDTLDGGSGADNMAGGIGDDTYVVNYSLDV-VTENAGEGTDL-VQSSTGWTLG-- 2791 +GGAG G G D GG T S V +T N G+G SS+ G Sbjct: 786 LGGAGGAKAYSGDGKDGADGGASTFT-----SGGVSLTANGGQGGKKGTNSSSSGARGLG 840 Query: 2792 --ANVEQLELTGMANARGTGNELDNRITGNIGSNMLAGDAGK--------DTLLGGAGND 2941 A + L+ TG + G GN + G +N AG GK D + G N Sbjct: 841 GTAVITGLDATGFSGGNG-GNGGSSPTNGQSRTNG-AGAGGKGGGGKLSNDNTISGGNNG 898 Query: 2942 TLDG--GTGADSMAGGIGD 2992 T DG G G AGG GD Sbjct: 899 TSDGPAGNGGFGSAGGSGD 917 >ref|NP_944342.1|gp33 Length = 472 Score = 37.4 bits (85), Expect = 0.082 Identities = 52/195 (26%), Positives = 75/195 (38%), Gaps = 21/195 (10%) Frame = +2 Query: 2732 TENAGEGTDLVQ------SSTGWTLGANVEQLELTGMANARGTGNELDNRITGNIGSNML 2893 T G+G ++VQ +T T G ++QL T R T + + N+ + + Sbjct: 216 TPVVGDGANIVQVGENIAQATRLTQGVRLDQLYGTAKGFLRATSSG-STTVPPNVTTIYV 274 Query: 2894 AGDAGKDTLLGGAGNDTLDGGTGADSMAGGIGDDIYVVNYSLDVVTENA---------DE 3046 +G+ G GG G T+ G S AGG G + +L VV + Sbjct: 275 SGNGGG---AGGGGCATV-GTPNIMSGAGGGGAGQFTEWQALTVVPGETLTYTIGGAGNG 330 Query: 3047 GIDLVQSSTGW--TLGANLENLELT---GTANTRGTGNDHDNRITG-NSGKNTLTGGAGN 3208 G V G T+ ++ L L+ G + G G + G N G GG G Sbjct: 331 GAPNVPGGAGGNTTITGSVSGLLLSLTGGVGGSPGVGGAYSAYTAGGNGGAGAPAGGYGQ 390 Query: 3209 DTLDGGTGADSMAGG 3253 DT G GA AGG Sbjct: 391 DTGPQGVGASGGAGG 405 Score = 35.0 bits (79), Expect = 0.41 Identities = 46/160 (28%), Positives = 59/160 (36%), Gaps = 12/160 (7%) Frame = +2 Query: 2546 TGTANTRGTGNDLDNRITGNSGKNTLVGGAGND---TLDGGSGADNMAGGIGDDTYVVNY 2716 T T G GN + G +G NT + G+ + +L GG G GG Y Sbjct: 319 TLTYTIGGAGNGGAPNVPGGAGGNTTITGSVSGLLLSLTGGVGGSPGVGG-AYSAYTAGG 377 Query: 2717 SLDVVTENAGEGTDLVQSSTGWTLGANVEQLELTGMANARGTGNELDNRITGN-IGSNML 2893 + G G D G + GA G +N G G + G+ IG+ ML Sbjct: 378 NGGAGAPAGGYGQDTGPQGVGASGGA--------GGSNPFGGGG---TAVRGSQIGNTML 426 Query: 2894 AGDAGKDTLLGG--------AGNDTLDGGTGADSMAGGIG 2989 AG A GG AGN T+ TG AG G Sbjct: 427 AGLAATGYGCGGGGCGGVYAAGNTTIPTSTGNSGGAGTPG 466 >ref|YP_195253.1|hypothetical protein Length = 3779 Score = 37.4 bits (85), Expect = 0.082 Identities = 61/236 (25%), Positives = 92/236 (38%), Gaps = 20/236 (8%) Frame = +2 Query: 7805 ILVAGSSNGDFAIVR--------YNADGSLDAD------FGSGGKLTTDFSGGYDDGRSV 7942 IL G+S G I+R + GSLD + S G++ D +G G + Sbjct: 3135 ILKGGTSAGIIEIIRGRFSTTPILHNTGSLDTPNIDFYKYTSTGRVI-DTAGQSLWGNNT 3193 Query: 7943 TLQSDGKILLAGSVEISSQYDFGIARYNSDGTLDTTFSDDGKVNTDINGGTYDVATNVKV 8122 L G+I +V S D +A G F G + G +DV+ V Sbjct: 3194 FLSGGGQISGFDNVNTSDPSDLRVA-----GNYTFVFPTGGSGS----GAAFDVS----V 3240 Query: 8123 QSDGKIIVSGVSCKEGGSGTDFALVRYNADGTL---DASFGSANMRNT---LNGWTEFTE 8284 DG + ++ VS GSG YN + TL D+S G N +NG + Sbjct: 3241 AFDGTVTLTIVS---SGSG-------YNDNETLTILDSSVGGGGAPNITLDINGVND--- 3287 Query: 8285 YGIPVVLDSNVQIYDAELAVADNYNGATLILMRNGGANDEDQFSALSGGTLNALTE 8452 +V I + A +++ L+L+ G D+FS L GGT+ L + Sbjct: 3288 -------PGDVYILPISIPAAADFDIGDLLLIDRGNPASPDEFSVLGGGTITGLRD 3336 >ref|YP_164733.1|orf98 Length = 1273 Score = 36.6 bits (83), Expect = 0.14 Identities = 46/224 (20%), Positives = 79/224 (35%), Gaps = 36/224 (16%) Frame = +2 Query: 2840 TGNELDNRITGNIGSNMLAGDAGKDTLLGG---AGNDTLDGGTGADSMAG---------G 2983 + + L++ + G+ GS +G G T GG G + GG+G +AG G Sbjct: 306 SNSTLEDAVGGSGGSGS-SGSGGNGTGGGGITVTGGGSSGGGSGLGKLAGLLVAGGAVTG 364 Query: 2984 IGDDIYVVNYSLDVVTENADEGIDLVQ----------------------SSTGWTLGANL 3097 + N S + + E+A++ ++ + TG+T G Sbjct: 365 AVRGVTSANNSGNTIRESAEDSVNSIMIGEANRTGTTSKHADNTILNNLQKTGYTNGTGY 424 Query: 3098 ENLELTGTANTRGTGNDHDNRITGNSGKNTLTGGAGNDTLDGGTGADSMAGGIGNDTYVV 3277 +TG AN + G + + GN T S G G + Sbjct: 425 GTTAMTGFANAYTSSTGDTKNYLGAADAASQLSRYGNMGTSSTTSLISAIGNAGAGAGIA 484 Query: 3278 NYSLDVVTENADEGVDLVQSSVSWTLGANIENL--ELISTGNTR 3403 N + + E + G+ S L + I+N + +S GN R Sbjct: 485 NTTKSIQGELVNSGMTARGSEQGQALTSMIQNQSGQSLSAGNVR 528 Score = 35.8 bits (81), Expect = 0.24 Identities = 70/303 (23%), Positives = 112/303 (36%), Gaps = 50/303 (16%) Frame = +2 Query: 2504 TGWTLGANLENLELTGTAN--TRGTGN--------DLDNRIT-----GNSGKNTLVGGAG 2638 TG+T G +TG AN T TG+ D ++++ G S +L+ G Sbjct: 416 TGYTNGTGYGTTAMTGFANAYTSSTGDTKNYLGAADAASQLSRYGNMGTSSTTSLISAIG 475 Query: 2639 NDTLDGGSGADNMAGGIGDDTYVVNYSLDVVTENAGEG-TDLVQSSTGWTLGA-NVEQL- 2809 N G+G N I + +VN + G+ T ++Q+ +G +L A NV L Sbjct: 476 N--AGAGAGIANTTKSIQGE--LVNSGMTARGSEQGQALTSMIQNQSGQSLSAGNVRDLA 531 Query: 2810 ELTGMANARGT------GNELDNRITGNIGS-------NMLAGDAGKDTLLGGAGNDTL- 2947 L G+ G+ G + N+++ +G+ N+ AG+ K GA L Sbjct: 532 SLQGIQAKYGSVMQGAQGADAYNKVSTGLGNYNDPLLRNLFAGNNSK---YAGAHGQALE 588 Query: 2948 ---------------DGGTGADSMAGGIGDDIYVVNYSLDVVTENADEGIDLVQSSTGWT 3082 D G M G GD Y D+ +D V+ + Sbjct: 589 YRDMQNMTKEPWKMGDMINGLQQMTG--GDSAETAMYISQKTGVKYDQAMDYVKMNNHGK 646 Query: 3083 LGANLENLELTGTANTRGTGN---DHDNRITGNSGKNTLTGGAGNDTLDGGTGADSMAGG 3253 L + + A T+G G D T ++ KN + T + G G S+ G Sbjct: 647 LTKSNIKSQARKNARTKGKGKKAYDKSGSKTIDNKKN-IRERRDTKTSESGDGIRSVLNG 705 Query: 3254 IGN 3262 + N Sbjct: 706 VTN 708 >ref|NP_943810.1|gp32 Length = 448 Score = 35.4 bits (80), Expect = 0.31 Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 3/140 (2%) Frame = +2 Query: 2609 GKNTLVGGAGNDTLDGGSGADNMAGGIGDDTYVVNYSLDVVTENA-GEGTDLVQSSTGWT 2785 G + V GA + G ++ AGG+ T V L NA G D Sbjct: 335 GTDIPVSGALTGVVGAGGASNGAAGGVSTCTTV---GLTAPVNNADASGQD--------- 382 Query: 2786 LGANVEQLELTGMANARGTGNELDNRITGNIGSNMLAGDAGKDTLLGGAGNDTLDGGTGA 2965 G N + L G+ G G G+ G++ AG+ G+D GG G +L G Sbjct: 383 -GGNAPNVTLNGITYPGGRG--------GSSGTSSSAGEDGQDPGGGGEGGGSLIAG--- 430 Query: 2966 DSMAGGIGDD--IYVVNYSL 3019 +AGG G +YV Y + Sbjct: 431 --LAGGAGGKGRVYVRVYEV 448 >ref|NP_817363.1|gp25 Length = 320 Score = 35.4 bits (80), Expect = 0.31 Identities = 61/258 (23%), Positives = 87/258 (33%), Gaps = 13/258 (5%) Frame = +2 Query: 2207 EGIDLVQSSVSWTLGANVENLELTGMANTRGTGNDHDNRITGNSGKNTLSGGVGNDTLXX 2386 E ++L V +GA+ + L G + GTG R T +S ++ GG G + Sbjct: 49 ENVNLTNEPVP--VGASGCWVTLIGGGGSGGTGR----RFTSSSNRSGGGGGGGGAKVFR 102 Query: 2387 XXXXXXXXXXXXNDTYVVNYSLD--VVTENAGEGTDLVQSSTGWTLGANLENLELTGTAN 2560 TY V L VT+ G + + G + +++L Sbjct: 103 TFVPVASM----GSTYSVTRGLGGAAVTDTGASGPNGKPGNAGGASTFSSGSIQLIANGG 158 Query: 2561 TRGTGNDLDNRITGNSGK-----------NTLVGGAGNDTLDGGSGADNMAGGIGDDTYV 2707 G G + G+ G N GGAG+ G G DN +GG Sbjct: 159 GGGGGGTSTSGSPGSGGTAFVSGISSTTANGSAGGAGDYNAAGAPGVDNTSGGAAGG--- 215 Query: 2708 VNYSLDVVTENAGEGTDLVQSSTGWTLGANVEQLELTGMANARGTGNELDNRITGNIGSN 2887 G G+D ST + G + +G A A T N + G N Sbjct: 216 ----------GGGSGSD---QSTIYFGGKGGDVTGASGGAGATFTSNAQN-------GPN 255 Query: 2888 MLAGDAGKDTLLGGAGND 2941 G AG GGAG D Sbjct: 256 QAPGQAGPGG--GGAGRD 271 >ref|NP_076691.1|host-specificity Length = 810 Score = 35.4 bits (80), Expect = 0.31 Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 16/200 (8%) Frame = +2 Query: 2636 GNDTLDGGSGADNMAG--GIGDDTYVVNYSLDVVTENAGEGTDLVQSSTGWTLG----AN 2797 GND DG G D AG G+G T V+ Y++ GT +TGWT Sbjct: 365 GNDGKDGADGHDGRAGKDGVGIKTTVITYAIST------SGT--TAPNTGWTNSVPSLVK 416 Query: 2798 VEQLELTGMANARGTGNELDNRIT-----GNIGSNMLAGDAG---KDTLL--GGAGNDTL 2947 + L + T +E +T GN G++ +AG G K T + G+ + T+ Sbjct: 417 GQYLWTKTVWTYSDTTSETGYSVTYIAKDGNDGNDGIAGKDGTGIKTTTITYAGSTSGTI 476 Query: 2948 DGGTGADSMAGGIGDDIYVVNYSLDVVTENADEGIDLVQSSTGWTLGANLENLELTGTAN 3127 +G + + Y+ ++ T+N E TG+++ A + N TG Sbjct: 477 APSSGWATTVPTVAAGSYLWTKTVWAYTDNTSE--------TGYSV-AKMGNNGATGPQG 527 Query: 3128 TRGTGNDHDNRITGNSGKNT 3187 G+ D +I N+ T Sbjct: 528 PPGSNGD-PGKIVSNTEPTT 546 >ref|NP_818345.1|gp44 Length = 326 Score = 35.0 bits (79), Expect = 0.41 Identities = 52/215 (24%), Positives = 71/215 (33%), Gaps = 8/215 (3%) Frame = +2 Query: 2657 GSGADNMAGGIGDDTYVVNYSLDVVTENAGEGT-DLVQSSTGWTLGANVEQLELTGMANA 2833 G G+ G G + ++ S+ ++ G L SST + GA +G+A A Sbjct: 131 GGGSTGFGGTDGGSSSFLSGSVSLIAGGGARGAIALSGSSTQVSGGAGSLTSVTSGVAGA 190 Query: 2834 RGTGNELDNRITGNIGSNMLAGDAGKDTLLGGAG-------NDTLDGGTGADSMAGGIGD 2992 + + GS GD GG G N GG G +S G G+ Sbjct: 191 VVIPGAPGGKGAASSGSAEDGGDNPSGAGAGGGGGGRVSDSNSQTPGGRGGNSAVGTGGE 250 Query: 2993 DIYVVNYSLDVVTENADEGIDLVQSSTGWTLGANLENLELTGTANTRGTGNDHDNRITGN 3172 G SS G N G G GN+ + TG+ Sbjct: 251 R----------------GGAGANGSSAADQTGGN------PGAGGGGGGGNNSGSTTTGH 288 Query: 3173 SGKNTLTGGAGNDTLDGGTGADSMAGGIGNDTYVV 3277 G GG G + T A GG G D YV+ Sbjct: 289 GGNGGKYGGGGGGSGGHRTNA-RRYGGAGGDGYVL 322 >ref|NP_818208.1|gp135 Length = 251 Score = 35.0 bits (79), Expect = 0.41 Identities = 50/182 (27%), Positives = 65/182 (35%) Frame = +2 Query: 2459 VTENAGEGTDLVQSSTGWTLGANLENLELTGTANTRGTGNDLDNRITGNSGKNTLVGGAG 2638 V +AG G D + T + G N GTA+ G ++ + I + GK G G Sbjct: 101 VVISAGWGADGGTAFTYYGSGGN------GGTASVSGLPFEVPSGILVSGGKGGNGGAPG 154 Query: 2639 NDTLDGGSGADNMAGGIGDDTYVVNYSLDVVTENAGEGTDLVQSSTGWTLGANVEQLELT 2818 N+ GS + N AGG G G G +ST T G+ Sbjct: 155 NNAGQAGSSSTNGAGGGG----------------GGGGGSRSSNSTHGTGGSG------- 191 Query: 2819 GMANARGTGNELDNRITGNIGSNMLAGDAGKDTLLGGAGNDTLDGGTGADSMAGGIGDDI 2998 G A+ + GN GS G AG T GG G GG G G + Sbjct: 192 GSASGGNPTGIMKAGAKGNNGSGR-GGSAGSAT--GGRGG----GGGGYTPATAGTPGEA 244 Query: 2999 YV 3004 YV Sbjct: 245 YV 246 >ref|NP_958546.1|putative protein Length = 1544 Score = 35.0 bits (79), Expect = 0.41 Identities = 59/268 (22%), Positives = 104/268 (38%), Gaps = 10/268 (3%) Frame = +2 Query: 2537 LELTGTANTRGTGNDLDNRITGNSGKNTLVGGAGNDTLDGGSG-ADNMAGGIGDDTYVVN 2713 L+ N G ++ +++ K GG G + D G+ A ++ G+ V Sbjct: 1175 LDAIKRGNYEAAGENISDKVDKGLSKRK-GGGKGKGSNDEGTKRAKEISNGLSSQAPNVQ 1233 Query: 2714 YSLDVVTENAGEGTDLVQSSTGWTLGANVEQLELTGMANARG--TGNELDNRITGNIGSN 2887 S V++ A +G L AN TG A A G T + + GS Sbjct: 1234 KSAKKVSDAADKG-----------LKAN------TGKAKAEGKKTATAYSSGVKSGKGSV 1276 Query: 2888 MLAGDAGKDTLLGGAGNDTLD----GGTGADSMAGGIGDDIYVVNYSLDVVTENADEGID 3055 A GA + T G + A + A GI V+ + + +A G++ Sbjct: 1277 SSASKELPKAAANGAKSSTSSVKSAGKSVASNYASGIKSGKDSVHSAAASLGSSAISGLN 1336 Query: 3056 LVQSS---TGWTLGANLENLELTGTANTRGTGNDHDNRITGNSGKNTLTGGAGNDTLDGG 3226 +SS TG TLG+++++ + ++ R TG D G+S + + G Sbjct: 1337 SKKSSAKSTGTTLGSSMQSGLKSKSSAMRSTGKD-----LGSSANSGARSYHSDMYSTGQ 1391 Query: 3227 TGADSMAGGIGNDTYVVNYSLDVVTENA 3310 A+ +A GI + + + + + +NA Sbjct: 1392 YLAEGIADGISSGSGAIRQAAESAVQNA 1419 >ref|NP_542581.1|hypothetical protein Length = 311 Score = 35.0 bits (79), Expect = 0.41 Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 11/211 (5%) Frame = +2 Query: 4655 DSEDGSISVLTNNGDGSFATKV--DYATGKYPWSAASADFDNDGHTDLXXXXXXXXXXXX 4828 DS G ++ + G G++ +++ DY G+ S A ++ + L Sbjct: 121 DSTFGDLTAIGGGGGGAYTSRISSDYG-GRDGGSGGGATDESQPGSALQPATDGGY---- 175 Query: 4829 LRNNGDGSFAAKVDYATGNIPDSVTTVDVNGD---GNADLVVAVTGSNYVSVMINNGDGF 4999 G GS +++ + + D +GD G+ + G+ Y +G+ Sbjct: 176 ----GHGSIHGRINEYSSGGGGAGEPGDADGDSQGGDGMDFSSTFGTQY------GENGW 225 Query: 5000 FAS----EVNYTTCSGP--WYVTSTDLNGDGMADLVVGSGYEKGVSVLINNGDGTFAEKI 5161 FA V TT SGP + G+G ++ GSG G + N G G + Sbjct: 226 FAGGGGGSVYSTTASGPNGRSLGGNGGGGNGGVEVSDGSGLNVGEDAMPNTGGGGGGSER 285 Query: 5162 DYAMGFSAVSIATADVNGDGKADLIVAKYYY 5254 D S++S ++ GDG + +++ KY Y Sbjct: 286 D-----SSLSASSDAYGGDGGSGIVILKYVY 311 >ref|NP_076651.1|DnaC Length = 294 Score = 35.0 bits (79), Expect = 0.41 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 11/146 (7%) Frame = +2 Query: 83 FNLILIGPSGTGKSYLAGGLCHEA---LKLG-YHALFRTMDDLIQTIRFKEITAAAAREY 250 FN + +G + GKS+LA + E LK + LF + +LI+ I+ + E Sbjct: 145 FNTVFVGGACRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNHSDTKAEE 204 Query: 251 KRLL----SAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 409 +RL + LLVIDD+ F + + G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNNWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 410 MLGDEVLATALLDRLLYKCEVIKLTG 487 D++++ + K VIK G Sbjct: 264 SYDDKIVSPIMEGS---KNSVIKFEG 286 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 144,308,493 Number of Sequences: 14420 Number of extensions: 3127238 Number of successful extensions: 10459 Number of sequences better than 0.5: 27 Number of HSP's better than 0.5 without gapping: 5540 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10339 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 12983872145 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig53 (30,325 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164394.1|DEAD box family helicase 41 0.008 ref|NP_050128.1|putative DEAH-family helicase 38 0.052 >ref|YP_164394.1|DEAD box family helicase Length = 526 Score = 40.8 bits (94), Expect = 0.008 Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 8/204 (3%) Frame = +1 Query: 19636 LSNAQQNALQTLSDAYKKQEFATFLLHGVTGSGKTLVYIEFLKQVIASGKTAIVLVPEIA 19815 L + QQ+A +++ + K T L+ TG GKT+V+ + ++ + G+ +VL Sbjct: 3 LRDYQQDARESIQAEWDKGNRKTLLVLP-TGCGKTIVFSKVIEDRVKKGERVLVLAHRGE 61 Query: 19816 LTPQTAARFRHHFHDDITILHSAMSDHEKYD--AWHNLRLGKTKIALGARSSVFAPLDNL 19989 L Q A + + T L +A E+ +W + +G + + + + P D Sbjct: 62 LLEQAADKL-----EKSTGLKTATEKAEQTSLGSWFRVVVGSVQTLMREKRLMQFPKDFF 116 Query: 19990 GAIIVDEEHDGAYKQDRNPRYQGRDTAIMRAMFENALCVLGTATP------SFESYHNAL 20151 II+DE H + YQ + F++A + TATP + SY +L Sbjct: 117 DTIIIDEAHHCV-----SDSYQR-----VLQYFDSANVLGVTATPDRSDMRNLGSYFESL 166 Query: 20152 NGKYTLITLPERIDGAKMPEIKII 20223 +Y TLP+ I + IK + Sbjct: 167 AFEY---TLPKAIKEGYLSPIKAL 187 >ref|NP_050128.1|putative DEAH-family helicase Length = 455 Score = 38.1 bits (87), Expect = 0.052 Identities = 23/80 (28%), Positives = 40/80 (50%) Frame = +1 Query: 20506 YKSSGTERIEEELNLLFPDELILRMDVDTTSSKDAHAKILKDFQDKKSKILLGTQMVAKG 20685 Y ++I +E N I +VD + K+ K ++DF+D K KIL+ ++ +G Sbjct: 224 YSVHSCQQIAKEFN----KNNIPAKEVDGKTKKEDRDKAMQDFRDGKIKILVNAELYGEG 279 Query: 20686 LDFPDVTLVGVLMADIGLNI 20745 +D PD V +L L++ Sbjct: 280 VDVPDCETVIMLRPTQSLSL 299 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 154,238,054 Number of Sequences: 14420 Number of extensions: 3232758 Number of successful extensions: 9263 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 5647 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9263 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 13891669994 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig54 (25,456 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_758929.1|ORF37 50 1e-05 ref|NP_695158.1|minor capsid protein 35 0.37 >ref|NP_758929.1|ORF37 Length = 303 Score = 49.7 bits (117), Expect = 1e-05 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 10/167 (5%) Frame = -3 Query: 23951 RMLGVPTVADRVAQTVGKETLEPLLEPIFHQDSYGYRPG-RSALDAVGVVRERCWKYD-- 23781 R++ P DRV +EPL + + DSY R G R+ A+ ++ K + Sbjct: 72 RLISAPHFKDRVVHRAIYNVIEPLFDKTYIYDSYACRRGERAPTKALTGLQYFIKKVESK 131 Query: 23780 ----WVVEFDISKFFDTMNHELL--MRAVRKHCQIEWVLLYVERWLKAPMMSPEGDLVER 23619 + ++ DIS++F +++H++L + + CQ LL+ + Sbjct: 132 HGKAYALKADISRYFSSIDHQVLKSILEAKIQCQRTLDLLF--------YIIDNSPCESM 183 Query: 23618 TKGTPQGGVISPLLANLFLHYAFDRWVSENLPGVPFCRYADD-GVLH 23481 G P G + S + AN++LH DR+ L + RY DD ++H Sbjct: 184 GVGIPLGNLTSQIFANVYLH-ELDRYAKHALGAKHYIRYMDDFAIIH 229 >ref|NP_695158.1|minor capsid protein Length = 1608 Score = 35.0 bits (79), Expect = 0.37 Identities = 25/77 (32%), Positives = 38/77 (49%) Frame = +1 Query: 20059 TKKGLNMKKYKVTLTQEERKELDALSSRGKHAAQTALNSLILLACDEGKYQKERSINETI 20238 TK + KKY L ++E K DA++ K ++ L+ L L +GK K++ + ETI Sbjct: 864 TKTAGDRKKYLAQLAKDENKSNDAVTKATKISSGKQLDILENLKDHKGKLSKQQ-MTETI 922 Query: 20239 ARVLNVSMKTIDRVKKR 20289 KTID K+ Sbjct: 923 KNSAQERDKTIDNADKQ 939 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 135,957,353 Number of Sequences: 14420 Number of extensions: 2950151 Number of successful extensions: 8216 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 5203 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8206 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 11757812612 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig55 (28,627 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_695158.1|minor capsid protein 53 2e-06 ref|NP_612844.1|Gp15 protein 52 3e-06 ref|NP_777327.1|hypothetical protein 51 7e-06 ref|NP_835600.1|putative glycosyltransferases 46 2e-04 ref|NP_803346.1|tail fiber protein 45 4e-04 ref|NP_075512.2|hypothetical protein 44 7e-04 ref|NP_663686.1|structural protein 44 7e-04 ref|NP_943827.1|gp49 44 9e-04 ref|NP_112710.1|ORF47 44 9e-04 ref|NP_108727.1|minor structural protein 3 44 9e-04 ref|NP_076626.1|endopeptidase 44 9e-04 ref|YP_006499.1|Cin 39 0.022 ref|NP_690783.1|ORF50 39 0.029 ref|NP_050655.1|Gin 39 0.037 ref|NP_899372.1|exsB protein 35 0.41 >ref|NP_695158.1|minor capsid protein Length = 1608 Score = 52.8 bits (125), Expect = 2e-06 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 2/89 (2%) Frame = -3 Query: 5819 NNGIDISVPVGTPVRAVSGGKVVQIAYMPTFGNIVIVRHPDSYL-TVYANLGSLRVAKNE 5643 + GID + P+GTP+ A GG VVQ FGN V+++ + + T+Y ++ ++V + Sbjct: 1257 HKGIDFAAPLGTPIPAQYGGTVVQAGPASGFGNWVVIKPSGASVDTIYGHMKRMKVKTGQ 1316 Query: 5642 VIKSQQLIG-VSGKMPEGGSVVHFEIWKG 5559 +K+ Q+I V + G VH+E+ G Sbjct: 1317 HVKAGQIIAWVGSEGQSSGPHVHYELRAG 1345 >ref|NP_612844.1|Gp15 protein Length = 983 Score = 52.0 bits (123), Expect = 3e-06 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 2/100 (2%) Frame = -3 Query: 5819 NNGIDISVPVGTPVRAVSGGKVVQIAYMPT-FGNIVIVRHPDSYLTVYANLGSLRVAKNE 5643 ++GID P+GTPVR G V++ + T +G + V H +T+YA+ L V + + Sbjct: 878 HDGIDFGTPIGTPVRVSKDGVVIKRRELTTSYGKYLFVDHGGGLITIYAHNSELLVNEGD 937 Query: 5642 VIKSQQLIGVSGKMPEG-GSVVHFEIWKGRVKQNPEQWLR 5526 +K Q+I +G G +H+E+ + QN LR Sbjct: 938 RVKRGQIIAKTGNTGNSTGPHLHWELRVNGIPQNVAPSLR 977 >ref|NP_777327.1|hypothetical protein Length = 196 Score = 50.8 bits (120), Expect = 7e-06 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 8/93 (8%) Frame = -3 Query: 5819 NNGIDISVP------VGTPVRAVSGGKVVQIAYMPTFGNIVIVRHPDSYL-TVYANLGSL 5661 + G+D++ P G PV A++ G+VV P +G +V++ HP + + T Y +L + Sbjct: 50 HTGVDLNGPGGGDTDCGQPVHAMTDGRVVIAGRFPVWGGMVVLWHPSAGVWTRYGHLRDI 109 Query: 5660 RVAKNEVIKSQQLIGVSGKMPEGGSV-VHFEIW 5565 V +V+ + Q IG GKM GG +HF+++ Sbjct: 110 LVHPGDVVVAGQQIGTIGKMTTGGYCHLHFDVF 142 >ref|NP_835600.1|putative glycosyltransferases Length = 484 Score = 45.8 bits (107), Expect = 2e-04 Identities = 25/60 (41%), Positives = 36/60 (60%) Frame = -1 Query: 17599 DDIVPLLSIADLMLMPSNVESFGLAALEAMACGVPVVATDAGGFPEFIAQGEHGYLLPPG 17420 ++I L + AD++L S+ E FG+A+LEA CG PVVAT GG + + E Y + G Sbjct: 294 EEIALLYNGADVVLQLSSNEGFGIASLEASLCGAPVVATMTGGIADQYSLYEMDYEVADG 353 >ref|NP_803346.1|tail fiber protein Length = 2066 Score = 45.1 bits (105), Expect = 4e-04 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%) Frame = -3 Query: 5867 QRFGSVEDRDLKIVRTNNGIDISVPVGTPVRAVSGGKVVQIAYMPTFGNIVIVRHPDSYL 5688 QRFGS + GID +P GT + AV GG ++ GN + ++ + Sbjct: 1691 QRFGSYTGGLNFNGGRHYGIDFGMPTGTNIYAVKGGIADKVWTDYGGGNSIQIKTGANEW 1750 Query: 5687 TVYANLGSLRVAKNEVIKSQQLIGVSGKMPE--GGSVVHFEIWKGR-----VKQNPEQWL 5529 Y +L + + IK+ QLIG SG G+ +HF++ +G ++PE+WL Sbjct: 1751 NWYMHLSKQLARQGQRIKAGQLIGKSGATGNFVRGAHLHFQLMQGSHPGNDTAKDPEKWL 1810 Query: 5528 R 5526 + Sbjct: 1811 K 1811 >ref|NP_075512.2|hypothetical protein Length = 2067 Score = 44.3 bits (103), Expect = 7e-04 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 7/103 (6%) Frame = -3 Query: 5813 GIDISVPVGTPVRAVSGGKVVQIAYMPTFGNIVIVRHPDSYLTVYANLGSLRVAKNEVIK 5634 GID +P GT V AV GG ++ GN + ++ + Y +L + + IK Sbjct: 1710 GIDFGMPSGTNVYAVKGGIADKVWTDYGGGNSIQIKTGANEWNWYMHLSKQLARQGQRIK 1769 Query: 5633 SQQLIGVSGKMPE--GGSVVHFEIWKGR-----VKQNPEQWLR 5526 + QLIG SG G+ +HF++ +G ++PE+WL+ Sbjct: 1770 AGQLIGKSGATGNFVRGAHLHFQLMQGSHPGNDTAKDPEKWLK 1812 >ref|NP_663686.1|structural protein Length = 908 Score = 44.3 bits (103), Expect = 7e-04 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Frame = -3 Query: 5786 TPVRAVSGGKVVQIA--YMPTFGNIVIVRHPDSYLTVYANLGSLRVAKNEVIKSQQLIGV 5613 TP+ A + G+VVQ Y +GN +++H D T YA+ + V+ + +K Q IG+ Sbjct: 812 TPILASNDGQVVQAGSNYYDWYGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGL 871 Query: 5612 SGKM-PEGGSVVHFE 5571 G P G +HF+ Sbjct: 872 MGATGPVTGPHLHFQ 886 >ref|NP_943827.1|gp49 Length = 429 Score = 43.9 bits (102), Expect = 9e-04 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 11/108 (10%) Frame = -3 Query: 5819 NNGIDISVPVGTPVRAVSGGKVVQIAYMPTFGNIVIVRHP---DSYLTVYANLG---SLR 5658 + G+D + GTP+ A GG V I FG +++ HP TVY ++ + Sbjct: 20 HRGLDFAAKDGTPIYAAQGGTVAYIGRADGFGQWIVIDHPAADGGGTTVYGHMWDAFATG 79 Query: 5657 VAKNEVIKSQQLIGVSGKMPEG-GSVVHFE----IWKGRVKQNPEQWL 5529 + + + +++ QLI G + G +HFE +W+ + +P+ WL Sbjct: 80 LRQGQRVEAGQLIAYVGTNGQSTGPHLHFEVHPTVWRQGSQIDPKPWL 127 >ref|NP_112710.1|ORF47 Length = 918 Score = 43.9 bits (102), Expect = 9e-04 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Frame = -3 Query: 5786 TPVRAVSGGKVVQIA--YMPTFGNIVIVRHPDSYLTVYANLGSLRVAKNEVIKSQQLIGV 5613 TP+ A G+VVQ Y +GN +++H D T YA+ + V+ + +K Q IG+ Sbjct: 822 TPILASGDGQVVQAGSNYYDWYGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGL 881 Query: 5612 SGKM-PEGGSVVHFE 5571 G P G +HF+ Sbjct: 882 MGATGPVTGPHLHFQ 896 >ref|NP_108727.1|minor structural protein 3 Length = 906 Score = 43.9 bits (102), Expect = 9e-04 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Frame = -3 Query: 5786 TPVRAVSGGKVVQIA--YMPTFGNIVIVRHPDSYLTVYANLGSLRVAKNEVIKSQQLIGV 5613 TP+ A + G+VVQ Y +GN +++H D T YA+ + V+ + +K Q IG+ Sbjct: 810 TPILASNDGQVVQAGSNYYNWYGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGL 869 Query: 5612 SGKM-PEGGSVVHFE 5571 G P G +HF+ Sbjct: 870 MGATGPVTGPHLHFQ 884 >ref|NP_076626.1|endopeptidase Length = 894 Score = 43.9 bits (102), Expect = 9e-04 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Frame = -3 Query: 5786 TPVRAVSGGKVVQIA--YMPTFGNIVIVRHPDSYLTVYANLGSLRVAKNEVIKSQQLIGV 5613 TP+ A G+VVQ Y +GN +++H D T YA+ + V+ + +K Q IG+ Sbjct: 798 TPILASGDGQVVQAGSNYYDWYGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGL 857 Query: 5612 SGKM-PEGGSVVHFE 5571 G P G +HF+ Sbjct: 858 MGATGPVTGPHLHFQ 872 >ref|YP_006499.1|Cin Length = 186 Score = 39.3 bits (90), Expect = 0.022 Identities = 17/40 (42%), Positives = 29/40 (72%) Frame = -1 Query: 23107 TKGDILIIRRVDRLGCSLRGLIDIFEQLQKWGVGFRSGND 22988 ++GD L++ ++DRLG S+R L+ + E+L+ G+ FRS D Sbjct: 53 SRGDTLVVWKLDRLGRSMRHLVVLVEELRDRGINFRSLTD 92 >ref|NP_690783.1|ORF50 Length = 321 Score = 38.9 bits (89), Expect = 0.029 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 1/99 (1%) Frame = -3 Query: 24062 YLDLCEYETALEYLNRSLSI-RQEIGHKLREGATLNNISQIYKVRGEYDTALEYLNRSLA 23886 Y+ L + +L Y+N S+ I R+ G+K + +L + Q Y G Y+ A E ++ Sbjct: 107 YMMLRQSLISLNYINDSIQIYRENEGYKRKLATSLMIVGQNYTDLGLYEKAEESFLEAIR 166 Query: 23885 ICQEIGDKRGEGTTLNNISLIYSARGEYDTALEYLKRSL 23769 I + + D +N+S+ YSA + LK+++ Sbjct: 167 ISRVLHDSLFTALIHHNLSITYSAANRSQDCINALKKAI 205 >ref|NP_050655.1|Gin Length = 193 Score = 38.5 bits (88), Expect = 0.037 Identities = 17/39 (43%), Positives = 28/39 (71%) Frame = -1 Query: 23104 KGDILIIRRVDRLGCSLRGLIDIFEQLQKWGVGFRSGND 22988 KGD L++ ++DRLG S++ LI + +L++ G+ FRS D Sbjct: 54 KGDTLVVWKLDRLGRSMKHLISLVGELRERGINFRSLTD 92 >ref|NP_899372.1|exsB protein Length = 238 Score = 35.0 bits (79), Expect = 0.41 Identities = 21/62 (33%), Positives = 29/62 (46%) Frame = -1 Query: 4855 VVLGLSGGIDSAVVCELASRALGSDQVLALMMPYRSSSTDSIVHAQLLVEKLGIRAETCS 4676 VV LSGG+DS ++ G D V AL Y + + A+L +KLGI Sbjct: 3 VVSVLSGGLDSTILTYKLVDEFGKDNVFALSFYYGQKQSIELEKAKLTCQKLGIEHRLID 62 Query: 4675 IT 4670 I+ Sbjct: 63 IS 64 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 148,465,593 Number of Sequences: 14420 Number of extensions: 3174448 Number of successful extensions: 8844 Number of sequences better than 0.5: 15 Number of HSP's better than 0.5 without gapping: 5417 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8834 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 13104929428 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig56 (23,864 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_006571.1|Doc 54 1e-06 ref|NP_038305.1|ORF5 45 3e-04 ref|NP_839903.1|putative DnaC protein 40 0.008 ref|NP_076710.1|DnaC 40 0.011 ref|NP_061611.1|orf 21 39 0.019 ref|NP_695040.1|putative replication protein DnaC 39 0.019 ref|NP_862860.1|gp21 39 0.024 ref|NP_075485.1|hypothetical protein 39 0.024 ref|NP_803371.1|dnaC 39 0.024 ref|NP_958645.1|77ORF013 38 0.041 ref|NP_944924.1|unknown 37 0.092 ref|NP_046798.1|Old 36 0.16 ref|NP_076651.1|DnaC 35 0.35 >ref|YP_006571.1|Doc Length = 126 Score = 53.5 bits (127), Expect = 1e-06 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 1/114 (0%) Frame = +2 Query: 1394 EVVIAIHDEQIAVHGGSLGIRDSGLLYSALARPKHKANYGD-PSVFDLAAAYAYGIIRNH 1570 E +IA+HD I+ +GG G+ D G + + R + + Y + +F+++A Y R H Sbjct: 7 EELIALHDANISRYGGLPGMSDPGRAEAIIGRVQARVAYEEITDLFEVSATYLVATARGH 66 Query: 1571 PFVDGNKRTGFLVAYVFLHINGWELRSIEVEAVNAVLDLAAGEMDEPFFSEWLK 1732 F D NKRT A +FL NG ++ E + + A GE+ ++ L+ Sbjct: 67 IFNDANKRTALNSALLFLRRNGVQVFD-SPELADLTVGAATGEISVSSVADTLR 119 >ref|NP_038305.1|ORF5 Length = 260 Score = 45.4 bits (106), Expect = 3e-04 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Frame = -3 Query: 23646 NFNLILIGPSGTGKSYLAGGLCHEALK-LGYH----ALFRTMDDLIQTIRFKEITAAAAR 23482 ++N++LIG +G GKS+LA + ALK L H +F + DL+ I KE A Sbjct: 119 DYNIVLIGNTGVGKSHLA----YSALKALSDHTKKMGVFINVVDLLAKI--KEDFNLEAE 172 Query: 23481 EYKRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDE 23302 +R+ A LV+DD+ EK L + L+++T IITTN SP++ G Sbjct: 173 YIRRISEAEWLVLDDL---GTEKVTEWSSGILYSILNKRTKTIITTNLSPQDILGTYGKR 229 Query: 23301 V 23299 V Sbjct: 230 V 230 >ref|NP_839903.1|putative DnaC protein Length = 294 Score = 40.4 bits (93), Expect = 0.008 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%) Frame = -3 Query: 23643 FNLILIGPSGTGKSYLAGGLCHEA---LKLG-YHALFRTMDDLIQTIR----FKEITAAA 23488 FN + +G +G GKS+LA + E LK + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 23487 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 23317 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 23316 MLGDEVLA 23293 D++++ Sbjct: 264 SYDDKIVS 271 >ref|NP_076710.1|DnaC Length = 294 Score = 40.0 bits (92), Expect = 0.011 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 11/128 (8%) Frame = -3 Query: 23643 FNLILIGPSGTGKSYLAGGLCHEALKL----GYHALFRTMDDLIQTIR----FKEITAAA 23488 FN + +G +G GKS+LA + E + + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDDKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 23487 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 23317 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 23316 MLGDEVLA 23293 D++++ Sbjct: 264 SYDDKIVS 271 >ref|NP_061611.1|orf 21 Length = 257 Score = 39.3 bits (90), Expect = 0.019 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 23640 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 23467 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 118 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIQMLMDRIKAAYNKNAVETTDELVRL 177 Query: 23466 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 23290 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 178 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 231 Query: 23289 ALLDRLLYKCEVIKLTGKSYR 23227 + R+ + +++ G +R Sbjct: 232 RINSRMKHNARKVRVIGDDFR 252 >ref|NP_695040.1|putative replication protein DnaC Length = 296 Score = 39.3 bits (90), Expect = 0.019 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 5/110 (4%) Frame = -3 Query: 23640 NLILIGPSGTGKSYLAGGLCHEALK-LGYHALFRTMDDLIQTIR--FKEITAAAAREY-- 23476 N ++ GP+GTGKS+LA + + L+ +F + +++ I+ F + + EY Sbjct: 153 NTVVSGPAGTGKSHLAMSILKDCLQHTDLTVIFASWSEVLHLIKDSFDNKDSFYSTEYFM 212 Query: 23475 KRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKE 23326 + + LLVIDDI EK + L L +T IITTN E Sbjct: 213 EVFRNTDLLVIDDI---GSEKITEWSMSLLTEVLDARTKTIITTNLKSDE 259 >ref|NP_862860.1|gp21 Length = 256 Score = 38.9 bits (89), Expect = 0.024 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Frame = -3 Query: 23640 NLILIGPSGTGKSYLAGGLCHEALKLGYH-ALFRTMDDLIQTIRFKEITAAAARE---YK 23473 N++ G +GTGKS+LA + + A+F + DL+ I+ A ++E Sbjct: 120 NIVFQGEAGTGKSHLAFAMMKYLSETTKEIAIFINVTDLLMKIK-----ADFSQEEFLVN 174 Query: 23472 RLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLG 23308 ++ SA LV+DD+ M EK L N L+++ + +ITTN + +E + G Sbjct: 175 KIASAKFLVLDDLGM---EKDSEWSFSILYNILNKRANTVITTNLTAQEIQKRYG 226 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 38.9 bits (89), Expect = 0.024 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 23640 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 23467 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 23466 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 23290 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 23289 ALLDRLLYKCEVIKLTGKSYR 23227 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 >ref|NP_803371.1|dnaC Length = 259 Score = 38.9 bits (89), Expect = 0.024 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 23640 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 23467 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 23466 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 23290 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 23289 ALLDRLLYKCEVIKLTGKSYR 23227 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 >ref|NP_958645.1|77ORF013 Length = 259 Score = 38.1 bits (87), Expect = 0.041 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 23640 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 23467 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 23466 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 23290 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 23289 ALLDRLLYKCEVIKLTGKSYR 23227 + R+ + +++ G +R Sbjct: 234 RINSRMKKRARKVRVIGDDFR 254 >ref|NP_944924.1|unknown Length = 106 Score = 37.0 bits (84), Expect = 0.092 Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = -2 Query: 1369 LASSWSAFRYSFMPQRAASICFANSGSYGVTVYPVG--VSVKNTMSPCFTLRRSVAAFGR 1196 L +S S F Y F P +A S NS S GV+V P S+KNT S ++LRR +F + Sbjct: 33 LKASSSHFIY-FSPLKAFSKLSTNSSSIGVSVLPARYLASLKNTFSIMYSLRRDKMSFQK 91 Query: 1195 ITPVEFPIFVTVARI 1151 P F +ARI Sbjct: 92 KLP---RFFRRIARI 103 >ref|NP_046798.1|Old Length = 586 Score = 36.2 bits (82), Expect = 0.16 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Frame = +1 Query: 4036 IEEPELGLHPDILPKLADLLIEASQR-TQIIVTTHSDILVDAMTETPESVVVCEKQDG 4206 I+EPEL LHP + + + L+ S+ Q+I++THS ++ A ++ VC+ +G Sbjct: 298 IDEPELYLHPSAINSVRESLVTLSESGYQVIISTHSASMLSA-KHAANAIQVCKDSNG 354 >ref|NP_076651.1|DnaC Length = 294 Score = 35.0 bits (79), Expect = 0.35 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 11/146 (7%) Frame = -3 Query: 23643 FNLILIGPSGTGKSYLAGGLCHEA---LKLG-YHALFRTMDDLIQTIRFKEITAAAAREY 23476 FN + +G + GKS+LA + E LK + LF + +LI+ I+ + E Sbjct: 145 FNTVFVGGACRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNHSDTKAEE 204 Query: 23475 KRLL----SAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 23317 +RL + LLVIDD+ F + + G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNNWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 23316 MLGDEVLATALLDRLLYKCEVIKLTG 23239 D++++ + K VIK G Sbjct: 264 SYDDKIVSPIMEGS---KNSVIKFEG 286 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 126,048,339 Number of Sequences: 14420 Number of extensions: 2678802 Number of successful extensions: 7243 Number of sequences better than 0.5: 13 Number of HSP's better than 0.5 without gapping: 4699 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7236 length of database: 3,019,461 effective HSP length: 111 effective length of database: 1,418,841 effective search space used: 11127969963 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig57 (33,492 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_006603.1|Gp23 77 8e-14 ref|NP_046572.1|ABC transporter 73 2e-12 ref|YP_006569.1|HumD 70 1e-11 ref|NP_046921.1|gp26 64 1e-09 ref|NP_046569.1|IMPB 63 2e-09 ref|NP_803358.1|cI-like repressor 40 0.011 ref|NP_058469.1|repressor 40 0.011 ref|NP_059606.1|C2 40 0.011 ref|NP_958626.1|77ORF011 40 0.011 ref|YP_164719.1|orf84 40 0.019 ref|NP_803258.1|cI-like repressor 39 0.043 ref|NP_510900.1|similar to phage phi PVL repressor 38 0.057 ref|NP_835522.1|similar to repressor 37 0.16 ref|NP_803311.1|cI-like repressor 37 0.16 ref|NP_859366.1|CI protein 36 0.28 ref|NP_859200.1|CI protein 36 0.28 ref|NP_050522.1|similar to CI repressor 36 0.28 ref|NP_040628.1|repressor 36 0.28 ref|NP_037735.1|prophage repressor CI 36 0.28 >ref|YP_006603.1|Gp23 Length = 127 Score = 77.4 bits (189), Expect = 8e-14 Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 2/118 (1%) Frame = +3 Query: 9930 GFPSPADDAMELGLDLNKALIRHPEATFYARVKGSSMVEANLREGDILVIDKSLHPKNGD 10109 GFPSPA D +E L L++ I+HP AT++ R ++ A + +G +LVID SL+P +G Sbjct: 2 GFPSPAADYVEKQLSLDEKFIKHPAATYFMRA-ANTCYRAGILQGALLVIDASLNPCDGS 60 Query: 10110 IAICFLDGEFTVKRISQDKSGLSLMPANDAFKPIRITEENDF--LVWGIVTYIIHKAR 10277 + +C LDGEF VKR L K ++E++ V+G++TYII+ AR Sbjct: 61 LLVCALDGEFRVKRYRMAPKP-HLEDLTSGRKEALPSQEDNCPPAVFGVITYIINDAR 117 >ref|NP_046572.1|ABC transporter Length = 705 Score = 73.2 bits (178), Expect = 2e-12 Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 1/187 (0%) Frame = -2 Query: 1679 VKKVNVDILSKYVTAIIGPSGCGKSTFLRSINRMNDLIPSCHTTGGLLFDGEDIYGKFTD 1500 V+ +N+ + K IIG SG GKSTF +S++++ + + +G DI D Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDK-----SIYLNGLDI--NRYD 551 Query: 1499 EVLLRKKIGMVFQKPNPFPKSIFENIAYGPKLHGIQDKKALAEIVERSLRKAALWD-EVS 1323 + +RK+I + + P F +I EN+ G Q++ A I+ + D + S Sbjct: 552 HLSIRKRIVYIDENPFLFKGTIKENLCMGEIFD--QNEIENACIMSQCHEFICNLDKQYS 609 Query: 1322 DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYT 1143 +L +N LS GQ+QRL +AR + +P++L+LDE S +DP T I + + R Sbjct: 610 YKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLH--RMDCL 667 Query: 1142 IMIVTHN 1122 I+++THN Sbjct: 668 IILITHN 674 Score = 40.4 bits (93), Expect = 0.011 Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Frame = -2 Query: 33437 QYSYI-----STLSGGERRRLYLLKQLIDSPNVLLLDEPTNDLDIPTLRVLEDYLDTYTG 33273 QYSY S LS G+++RL L + ++ P VL+LDE +++D +++ + L Sbjct: 607 QYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDC 666 Query: 33272 CLIVVSHD 33249 +I+++H+ Sbjct: 667 LIILITHN 674 >ref|YP_006569.1|HumD Length = 129 Score = 70.5 bits (171), Expect = 1e-11 Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Frame = +3 Query: 9930 GFPSPADDAMELGLDLNKALIRHPEATFYARVKGSSMVEANLREGDILVIDKSLHPKNGD 10109 GFPSPA D +E + L++ LIRHP AT++ R S E L +G +LV+D SL P +G Sbjct: 2 GFPSPAADYVESRISLDQQLIRHPSATYFMRAADSHHREGIL-QGALLVVDSSLTPVDGS 60 Query: 10110 IAICFLDGEFTVKRISQDKSGLSLMPANDAFKPIRITEENDF----LVWGIVTYIIHKAR 10277 + +C ++GE+ +KR + L + K +++ + V+G++T++I+ AR Sbjct: 61 LLVCAMEGEYRIKRY-RKYPRQHLEDLSTGKKEALPVDDDGYTCSNAVFGVITHVINDAR 119 >ref|NP_046921.1|gp26 Length = 128 Score = 63.9 bits (154), Expect = 1e-09 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Frame = +3 Query: 9930 GFPSPADDAMELGLDLNKALIRHPEATFYARVKGSSMVEANLREGDILVIDKSLHPKNGD 10109 GFPSPA D +E + L+K L+ P AT++ R G++ + + G +LV+D S P +G Sbjct: 2 GFPSPAQDYVEERISLDKLLLTRPSATYFMRA-GATHYQEGILYGALLVVDASRTPCDGS 60 Query: 10110 IAICFLDGEFTVKRISQDKSG--LSLMPANDAFKPIRITEENDFLVWGIVTYIIHKAR 10277 + +C +DGE +KR + + L P E + ++G++TY I+ R Sbjct: 61 LLVCRMDGELRIKRYRKSPTPHLEDLQTGRREEIPKYDDETSPDAIFGVITYSINDMR 118 >ref|NP_046569.1|IMPB Length = 416 Score = 62.8 bits (151), Expect = 2e-09 Identities = 96/409 (23%), Positives = 156/409 (38%), Gaps = 11/409 (2%) Frame = +3 Query: 10308 VDCNNFYVSCERV---FNPGLQNRPVVVLSNNDGCFIARSEEA--KAIGLAMGDPAYKNR 10472 VD +FY S V NP VV + G + + A K G+ G ++ Sbjct: 15 VDMKSFYASVSAVTMGLNPLTCYLAVVGNTERQGSVVLAASPALKKDFGIKTGSRLFEIP 74 Query: 10473 ELLRQHNVAVYSANFPLYGDMSARVMKTLETLAPD--LEIYSIDECFLDLGGFGKFNLAD 10646 E R H + + L+ +S + K P+ + YSIDE FLD GK + + Sbjct: 75 EDPRIH---IVNPQMKLFIRVSTEITKLFYRFVPEKCVHTYSIDESFLDA---GKEDPEE 128 Query: 10647 YAAATRKTVHRNTGIPVSIGIGATKTIAKAANRMAKKNLSLGGVCILSTAAATREALGAM 10826 A A + ++ R G+ ++GIG ++K A + K + G+ + Sbjct: 129 MAKAIQSSMWREFGLMCTVGIGDNMLLSKLALDLESKK-TKSGIARWRYEDVPNKLWKVR 187 Query: 10827 AVEHIWGIGSQYAALLHKQHIHTALDFADAPTHWVQKHLHITGARVQQELNGHSCLPLEL 11006 + +WGIG + L++ I T A P ++K I G ++ +G ++L Sbjct: 188 PLSKMWGIGGRMERNLNRMGISTIGQLAKFPLELLEKKFGIMGNQLYYHAHG-----IDL 242 Query: 11007 VRSRKQSICTSRSFGS---LVSSYEEIGYAIAHFTSTCAFKLRREGSRASLLTVFLYTSP 11177 + SFG L+ Y A C RR + + Sbjct: 243 SEIGAPLMQGQISFGKSQILLRDYTRSEEIKAVLLEICEEVARRARTHNKVGRTISLGIG 302 Query: 11178 FIEKENRYRGTRTFALPFPSNNTXXXXXXXXXXXXSIYRSGYGYKKAGVLVSGITDEKGA 11357 + + E R+ + P++ T Y SG + V +S I D+ Sbjct: 303 YSKDELGGGFHRSKTIDLPTSITMDIYRCCLMLFNKFY-SGKTVRSVSVTLSNIEDD--- 358 Query: 11358 AMTTLSLFDNDPLPRNQKRDMKLMETLDAINSRFG-QGTLRTASDTNSG 11501 LSLF+ D N+KR KL +D I S++G + LR S T +G Sbjct: 359 VNQQLSLFEVD----NEKR-RKLGFVMDGIRSKYGSKAILRAVSYTPAG 402 >ref|NP_803358.1|cI-like repressor Length = 256 Score = 40.4 bits (93), Expect = 0.011 Identities = 27/83 (32%), Positives = 41/83 (49%) Frame = +3 Query: 10005 ATFYARVKGSSMVEANLREGDILVIDKSLHPKNGDIAICFLDGEFTVKRISQDKSGLSLM 10184 A F V G SM E L++G I K K+G IA+ LDG +KR+ + ++L+ Sbjct: 173 ADFCILVNGDSM-EPMLKQGTYAFIKKEDSIKDGTIALVVLDGVSLIKRVDICEDYINLV 231 Query: 10185 PANDAFKPIRITEENDFLVWGIV 10253 N + I++ +D V G V Sbjct: 232 SLNPKYDDIKVASFSDIKVMGKV 254 >ref|NP_058469.1|repressor Length = 256 Score = 40.4 bits (93), Expect = 0.011 Identities = 27/83 (32%), Positives = 41/83 (49%) Frame = +3 Query: 10005 ATFYARVKGSSMVEANLREGDILVIDKSLHPKNGDIAICFLDGEFTVKRISQDKSGLSLM 10184 A F V G SM E L++G I K K+G IA+ LDG +KR+ + ++L+ Sbjct: 173 ADFCILVNGDSM-EPMLKQGTYAFIKKEDSIKDGTIALVVLDGVSLIKRVDICEDYINLV 231 Query: 10185 PANDAFKPIRITEENDFLVWGIV 10253 N + I++ +D V G V Sbjct: 232 SLNPKYDDIKVASFSDIKVMGKV 254 >ref|NP_059606.1|C2 Length = 216 Score = 40.4 bits (93), Expect = 0.011 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%) Frame = +3 Query: 10002 EATFYARVKGSSMVEA---NLREGDILVIDKSLHPKNGDIAICFLDG--EFTVKRISQDK 10166 E +F+ V+G SM ++ EG I+++D + P+NG + + L+G E T K++ D Sbjct: 121 EDSFWLDVQGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEATFKKLVMDA 180 Query: 10167 SGLSLMPANDAFKPIRI 10217 L P N + I I Sbjct: 181 GRKFLKPLNPQYPMIEI 197 >ref|NP_958626.1|77ORF011 Length = 255 Score = 40.4 bits (93), Expect = 0.011 Identities = 27/83 (32%), Positives = 41/83 (49%) Frame = +3 Query: 10005 ATFYARVKGSSMVEANLREGDILVIDKSLHPKNGDIAICFLDGEFTVKRISQDKSGLSLM 10184 A F V G SM E L++G I K K+G IA+ LDG +KR+ + ++L+ Sbjct: 172 ADFCILVNGDSM-EPMLKQGTYAFIKKEDSIKDGTIALVVLDGVSLIKRVDICEDYINLV 230 Query: 10185 PANDAFKPIRITEENDFLVWGIV 10253 N + I++ +D V G V Sbjct: 231 SLNPKYDDIKVASFSDIKVMGKV 253 >ref|YP_164719.1|orf84 Length = 158 Score = 39.7 bits (91), Expect = 0.019 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Frame = +1 Query: 23983 KRKAIYPGTFDPFTNGHLDVLDRALNIFDEVEVVI----GENSQKKTLFTVNERLEMIRE 24150 K+ +Y GTF PF GH L RAL + D V +V+ G+ L + +R +RE Sbjct: 15 KKIGVYFGTFSPFHVGHQQDLYRALAVNDGVVLVVSGYKGDRGDNIGL-PLYKRFRYLRE 73 Query: 24151 IVIEFPGVTVAVLHDGLLANY 24213 + P + VA+L++ + Y Sbjct: 74 AFADEPNIVVAMLNEDNIPRY 94 >ref|NP_803258.1|cI-like repressor Length = 239 Score = 38.5 bits (88), Expect = 0.043 Identities = 26/83 (31%), Positives = 41/83 (49%) Frame = +3 Query: 10005 ATFYARVKGSSMVEANLREGDILVIDKSLHPKNGDIAICFLDGEFTVKRISQDKSGLSLM 10184 A F V G SM E L++G I K K+G IA+ LDG +KR+ + ++L+ Sbjct: 156 ADFCILVNGDSM-EPMLKQGTYAFIKKEDSIKDGTIALVVLDGVSLIKRVDICEDYINLV 214 Query: 10185 PANDAFKPIRITEENDFLVWGIV 10253 N + I++ ++ V G V Sbjct: 215 SLNPKYDDIKVASFSNIKVMGKV 237 >ref|NP_510900.1|similar to phage phi PVL repressor Length = 238 Score = 38.1 bits (87), Expect = 0.057 Identities = 19/64 (29%), Positives = 38/64 (59%) Frame = +3 Query: 10020 RVKGSSMVEANLREGDILVIDKSLHPKNGDIAICFLDGEFTVKRISQDKSGLSLMPANDA 10199 +V G SM E ++G+I+ ++K+ + KNG I I ++ E VK++ + L+L+ N Sbjct: 160 KVNGDSM-EPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKK 218 Query: 10200 FKPI 10211 ++ + Sbjct: 219 YRDL 222 >ref|NP_835522.1|similar to repressor Length = 237 Score = 36.6 bits (83), Expect = 0.16 Identities = 19/58 (32%), Positives = 35/58 (60%) Frame = +3 Query: 10020 RVKGSSMVEANLREGDILVIDKSLHPKNGDIAICFLDGEFTVKRISQDKSGLSLMPAN 10193 +V G SM E ++G+I+ ++K+ + KNG I I ++ E VK++ + L+L+ N Sbjct: 159 KVNGDSM-EPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLN 215 >ref|NP_803311.1|cI-like repressor Length = 237 Score = 36.6 bits (83), Expect = 0.16 Identities = 19/58 (32%), Positives = 35/58 (60%) Frame = +3 Query: 10020 RVKGSSMVEANLREGDILVIDKSLHPKNGDIAICFLDGEFTVKRISQDKSGLSLMPAN 10193 +V G SM E ++G+I+ ++K+ + KNG I I ++ E VK++ + L+L+ N Sbjct: 159 KVNGDSM-EPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLN 215 >ref|NP_859366.1|CI protein Length = 231 Score = 35.8 bits (81), Expect = 0.28 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 6/80 (7%) Frame = +3 Query: 10002 EATFYARVKGSSMV-----EANLREGDILVIDKSLHPKNGDIAICFLDG-EFTVKRISQD 10163 ++ F+ V+G+SM + + +G ++++D + GD I L G EFT K++ +D Sbjct: 133 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 192 Query: 10164 KSGLSLMPANDAFKPIRITE 10223 + L P N + I E Sbjct: 193 SGQVFLQPLNPQYPMIPCNE 212 >ref|NP_859200.1|CI protein Length = 231 Score = 35.8 bits (81), Expect = 0.28 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 6/80 (7%) Frame = +3 Query: 10002 EATFYARVKGSSMV-----EANLREGDILVIDKSLHPKNGDIAICFLDG-EFTVKRISQD 10163 ++ F+ V+G+SM + + +G ++++D + GD I L G EFT K++ +D Sbjct: 133 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 192 Query: 10164 KSGLSLMPANDAFKPIRITE 10223 + L P N + I E Sbjct: 193 SGQVFLQPLNPQYPMIPCNE 212 >ref|NP_050522.1|similar to CI repressor Length = 169 Score = 35.8 bits (81), Expect = 0.28 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 6/80 (7%) Frame = +3 Query: 10002 EATFYARVKGSSMV-----EANLREGDILVIDKSLHPKNGDIAICFLDG-EFTVKRISQD 10163 ++ F+ V+G+SM + + +G ++++D + GD I L G EFT K++ +D Sbjct: 71 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 130 Query: 10164 KSGLSLMPANDAFKPIRITE 10223 + L P N + I E Sbjct: 131 SGQVFLQPLNPQYPMIPCNE 150 >ref|NP_040628.1|repressor Length = 237 Score = 35.8 bits (81), Expect = 0.28 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 6/80 (7%) Frame = +3 Query: 10002 EATFYARVKGSSMV-----EANLREGDILVIDKSLHPKNGDIAICFLDG-EFTVKRISQD 10163 ++ F+ V+G+SM + + +G ++++D + GD I L G EFT K++ +D Sbjct: 139 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 198 Query: 10164 KSGLSLMPANDAFKPIRITE 10223 + L P N + I E Sbjct: 199 SGQVFLQPLNPQYPMIPCNE 218 >ref|NP_037735.1|prophage repressor CI Length = 237 Score = 35.8 bits (81), Expect = 0.28 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 6/80 (7%) Frame = +3 Query: 10002 EATFYARVKGSSMV-----EANLREGDILVIDKSLHPKNGDIAICFLDG-EFTVKRISQD 10163 ++ F+ V+G+SM + + +G ++++D + GD I L G EFT K++ +D Sbjct: 139 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 198 Query: 10164 KSGLSLMPANDAFKPIRITE 10223 + L P N + I E Sbjct: 199 SGQVFLQPLNPQYPMIPCNE 218 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 172,570,050 Number of Sequences: 14420 Number of extensions: 3647026 Number of successful extensions: 10351 Number of sequences better than 0.5: 19 Number of HSP's better than 0.5 without gapping: 5827 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10342 length of database: 3,019,461 effective HSP length: 114 effective length of database: 1,375,581 effective search space used: 15198794469 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig58 (29,275 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase 64 6e-10 ref|NP_835534.1|hypothetical protein 47 1e-04 ref|YP_164282.1|hypothetical protein 42 0.003 ref|NP_061549.1|Orf53 37 0.15 ref|NP_058480.1|orf 41 36 0.19 ref|NP_542287.1|unknown 36 0.19 ref|YP_003923.1|putative ATP-dependent helicase 35 0.32 ref|NP_690769.1|ORF36 35 0.32 ref|NP_038305.1|ORF5 35 0.42 ref|NP_818317.1|gp16 35 0.42 >ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase Length = 327 Score = 64.3 bits (155), Expect = 6e-10 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 4/94 (4%) Frame = +1 Query: 28378 EISVILPTFNRARLLDTAIQSVLGQTF--TDWELLVVDDGSSDN--TFDLVNPYITENPR 28545 ++SVI+PTFN L I SVL QT TD+EL+++DD S+DN T +++ Y R Sbjct: 3 KVSVIMPTFNNGEKLHRTISSVLNQTMKSTDYELIIIDDHSNDNGETLNVIKKY-KGLVR 61 Query: 28546 IRYLRHCNRKLNNTRNAGIQAAFGRYITFLDSDD 28647 + L+ + + RN G++ + Y+ FLDSDD Sbjct: 62 FKQLKKNSGNASVPRNTGLKMSKAEYVFFLDSDD 95 >ref|NP_835534.1|hypothetical protein Length = 647 Score = 47.0 bits (110), Expect = 1e-04 Identities = 40/209 (19%), Positives = 96/209 (45%), Gaps = 1/209 (0%) Frame = -2 Query: 22890 QTLVRTTEELRASRDSLRHWFASLKLELLEKRLVSLDEELSRHHIAIERLDTERRSQQGR 22711 + +++T ++ + + L K ++L ++ +++++ I I + ++ Sbjct: 174 EDVIKTNDDFKELNNILGDHEIETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVPEF 233 Query: 22710 DRELRRTIAENGGDRIESISAEIRQKQEELERRNQKAARYEELARLLGEHPAATAEEFHS 22531 D + R TI + +++E+ +I+ EE+ RNQ A + EL R+ + A+ + H+ Sbjct: 234 DND-RHTIIKQEIEQLENERIDIQNGAEEINLRNQLADKQSELKRIEANNSASNENKIHA 292 Query: 22530 QQAGHSAMRDATAEVEAQVQNNLNEAGVLFTQGRHEHEQLTEEIKGLKARMSNI-DEKQV 22354 A ++ +++ N + T + QL E KGLK+ + ++K Sbjct: 293 LTNELHVENGTVANLKTRLKQNKQQ----ITHEENRRNQLLENHKGLKSDLEKAKNQKFE 348 Query: 22353 AMRRSLCEALNLSEKEMPFAGELLQVREQ 22267 + ++C +++P A ++ +VRE+ Sbjct: 349 YLDDNVCSCCG---QQLP-AEQVSEVREK 373 >ref|YP_164282.1|hypothetical protein Length = 338 Score = 42.0 bits (97), Expect = 0.003 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 7/157 (4%) Frame = -2 Query: 22878 RTTEELRASRD-----SLRHWFASLKLELLEKRLVSLDE--ELSRHHIAIERLDTERRSQ 22720 +T++E+ A D H F L E + ++DE ++ +A E+ + +R+ Sbjct: 137 KTSDEIAAMIDRCGEIDTAHDFYDLTKEAQAAQQTAMDELTQMLTDRLAFEQAERQRQEL 196 Query: 22719 QGRDRELRRTIAENGGDRIESISAEIRQKQEELERRNQKAARYEELARLLGEHPAATAEE 22540 + + E+RR R+E AE+R++QEE++R+ ++ AR + R L AE+ Sbjct: 197 EAQQAEMRR--------RMEEQDAEMRRQQEEMQRQREELARQQ---RELAAARQQLAEQ 245 Query: 22539 FHSQQAGHSAMRDATAEVEAQVQNNLNEAGVLFTQGR 22429 A R A AQ++ A TQ R Sbjct: 246 ETPAAVDPEAPRVEAAPAPAQIKPASKAAEPSATQWR 282 >ref|NP_061549.1|Orf53 Length = 354 Score = 36.6 bits (83), Expect = 0.15 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 22/127 (17%) Frame = -2 Query: 22821 LKLELLEKRLVSLDEELSRHHIAIERLDTERRSQQGRDRELRR-----TIAEN------- 22678 L+ E + +E ++R ERL ERR+Q+ RD RR AE Sbjct: 196 LRAEAAAREQKEREERIAREAAEAERLAAERRAQEERDATARREAEAKAAAERRELELRL 255 Query: 22677 GGDRIESISAEIRQKQEELERRNQKAA----------RYEELARLLGEHPAATAEEFHSQ 22528 ++ E E +Q+ E+ ER Q+ A + +E AR+ E A +++ H + Sbjct: 256 AAEKAEREKLEAQQRAEQAERDAQRRAEEATAAERQRQADEQARIEREAAARESDKAHKK 315 Query: 22527 QAGHSAM 22507 + A+ Sbjct: 316 AINNEAL 322 >ref|NP_058480.1|orf 41 Length = 332 Score = 36.2 bits (82), Expect = 0.19 Identities = 24/142 (16%), Positives = 65/142 (45%) Frame = -2 Query: 22890 QTLVRTTEELRASRDSLRHWFASLKLELLEKRLVSLDEELSRHHIAIERLDTERRSQQGR 22711 + +++T ++ + + L K ++L ++ +++++ I I + ++ Sbjct: 178 EDVIKTNDDFKELNNILGDHEIETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVPEF 237 Query: 22710 DRELRRTIAENGGDRIESISAEIRQKQEELERRNQKAARYEELARLLGEHPAATAEEFHS 22531 D + R I + +++E+ +I+ +EE+ RNQ A + EL R+ + A+ + H+ Sbjct: 238 DND-RYAIIKQEIEQLENERIDIQNGKEEINLRNQLADKQSELKRIEDNNSASNENKIHA 296 Query: 22530 QQAGHSAMRDATAEVEAQVQNN 22465 A ++ +++ N Sbjct: 297 LTNELHVENGTAANLKTRLKQN 318 >ref|NP_542287.1|unknown Length = 224 Score = 36.2 bits (82), Expect = 0.19 Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 17/185 (9%) Frame = -3 Query: 21266 NTRKSGNLRLAKSMSTLPPARNIAQCLNNFGPTICLASRGGSRSCSTKTLSAKSPIFSR- 21090 +T +S A S+S P A I C + PT R C++ T SA SP F R Sbjct: 4 STYRSSTCIPASSISPCP-APVIITCTSRMRPTWTRPER----RCASPTRSAASPTFRRW 58 Query: 21089 ---NWP-ANGRPSRNALPGSMNRSRKSTSMRVDT--SPSKHN*TSTPISVIFSRSCEPAP 20928 WP + R R+ + + +++S+ R+ + + SKH+ S + S+S AP Sbjct: 59 TRSAWPTSRSRRLRSKISSARGPAQRSSKRRLPSIAAWSKHSARSQRARSLPSKSLATAP 118 Query: 20927 KVLL-------PVRTTPSTPKPNSSRCGESSIA---SVVVKPMPTSIGAGQPKSPTYATG 20778 + + P+R P+ R SIA S + + S+ AG P T Sbjct: 119 QHRIPLARTRDPIRLLPALMGACGRRARPRSIATSRSAMRRSSAFSMTAGAPAMSTCLRS 178 Query: 20777 SFLPP 20763 + P Sbjct: 179 TMTAP 183 >ref|YP_003923.1|putative ATP-dependent helicase Length = 672 Score = 35.4 bits (80), Expect = 0.32 Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 3/99 (3%) Frame = -3 Query: 14270 IARQLQEHEQVLCIVNTRKDCRELHAQMPAGTVHLSALMCPEHRSKVISEVKSKLMTGEL 14091 +A++ +E VL + C+E A +P G+ + A++ + +K ++ + G++ Sbjct: 321 VAKKAEERNAVLITCAGVRHCKEAAAALPPGSTY--AIITGDTDNKARKKILDDVRAGKI 378 Query: 14090 VRVVSTQLLEAGVDI---DFPTVYRSFSGLDSIAQAAGR 13983 L GV++ DF + R L + Q GR Sbjct: 379 KYTFQVMALTTGVNVPNWDFSVILRKIGSLTLLIQLLGR 417 >ref|NP_690769.1|ORF36 Length = 1018 Score = 35.4 bits (80), Expect = 0.32 Identities = 21/62 (33%), Positives = 31/62 (50%) Frame = -2 Query: 21489 QQQTHTLLSEAGAESASRFAALRQMRSDAFGDQSVTIESCDNREREMRDWLQTKIDAENG 21310 +QQ L + GAE+ +A L Q S A GD + +E D ++M D T +D +G Sbjct: 388 EQQAAALKTIVGAEAYKHWAVLLQKGSKALGDNTKALEKSDGAAKKMAD---TMLDNAHG 444 Query: 21309 KI 21304 I Sbjct: 445 SI 446 >ref|NP_038305.1|ORF5 Length = 260 Score = 35.0 bits (79), Expect = 0.42 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 5/112 (4%) Frame = -3 Query: 29252 SGTGKSYLAGGLCHEALK-LGYHA----LFRTMDDLIQTIRFKEITAAAAREYKRLLSAH 29088 +G GKS+LA + ALK L H +F + DL+ I KE A +R+ A Sbjct: 128 TGVGKSHLA----YSALKALSDHTKKMGVFINVVDLLAKI--KEDFNLEAEYIRRISEAE 181 Query: 29087 LLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEV 28932 LV+DD+ EK L + L+++T IITTN SP++ G V Sbjct: 182 WLVLDDL---GTEKVTEWSSGILYSILNKRTKTIITTNLSPQDILGTYGKRV 230 >ref|NP_818317.1|gp16 Length = 461 Score = 35.0 bits (79), Expect = 0.42 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +1 Query: 28576 LNNTRNAGIQAAFGRYITFLDSDDSYTPDHLES 28674 L + RN + A GRY+ F+D DD PD+L + Sbjct: 79 LGDKRNVMVDIAQGRYVVFIDDDDRIEPDYLST 111 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 158,457,988 Number of Sequences: 14420 Number of extensions: 3470906 Number of successful extensions: 10342 Number of sequences better than 0.5: 10 Number of HSP's better than 0.5 without gapping: 5675 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10336 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 13405169644 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig59 (28,235 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_025041.1|putative transposase B 62 4e-09 ref|NP_958675.1|reverse transcriptase 61 5e-09 ref|NP_996568.1|reverse transcriptase 61 5e-09 ref|NP_996616.1|hypothetical protein predicted by GeneMark 61 5e-09 ref|NP_758929.1|ORF37 60 2e-08 ref|NP_445672.1|putative helicase 58 5e-08 ref|NP_859396.1|hypothetical protein 56 2e-07 ref|NP_536395.1|ISBt3 transposase subunit protein 49 2e-05 ref|NP_543070.1|putative replication protein DnaC 45 5e-04 ref|NP_958229.1|gene 55 protein 41 0.006 ref|NP_803254.1|integrase 40 0.010 ref|NP_695147.1|integrase 40 0.013 ref|NP_624303.1|integrase fragment 40 0.013 ref|NP_061591.2|integrase 39 0.022 ref|NP_818023.1|gp50 38 0.063 ref|NP_612851.1|putative integrase 38 0.063 ref|NP_076752.1|integrase 38 0.063 ref|NP_795429.1|putative integrase 37 0.083 ref|YP_024516.1|putative DNA polymerase 37 0.083 ref|NP_663635.1|putative integrase 37 0.083 ref|NP_076635.1|integrase 37 0.083 ref|YP_025047.1|putative integrase 37 0.11 ref|NP_680502.1|integrase 37 0.14 ref|NP_695029.1|Integrase 36 0.18 ref|NP_996675.1|integrase 36 0.18 ref|NP_511007.1|integrase 36 0.24 ref|NP_046786.1|Int 36 0.24 ref|NP_878228.1|Int 36 0.24 ref|NP_839878.1|Int 36 0.24 ref|NP_438114.1|integrase-like protein 35 0.31 ref|NP_795541.1|putative integrase 35 0.31 ref|NP_116524.1|integrase 35 0.31 ref|NP_075464.1|integrase 35 0.41 ref|NP_803307.1|integrase 35 0.41 ref|NP_058467.1|integrase 35 0.41 ref|NP_061531.1|integrase 35 0.41 ref|NP_108680.1|integrase 35 0.41 ref|NP_076573.1|integrase 35 0.41 >ref|YP_025041.1|putative transposase B Length = 280 Score = 61.6 bits (148), Expect = 4e-09 Identities = 66/278 (23%), Positives = 127/278 (45%), Gaps = 15/278 (5%) Frame = +1 Query: 7240 CQVVGISLRTLQRWKCCGVKDNRKGA----VKRVVRKLEAETRQAI----IGHCNTERYQ 7395 C+++G+S R++ K +++ A +K+ + ++ AE +Q I H Q Sbjct: 2 CRILGVSRAQYYRYR--SPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQ 59 Query: 7396 DL----NPHEIVPLLLNEGVYLASVSTFYRVLKAEHLVHHRSNTRPKQGYGKPPERLATG 7563 L +P I L+ ++ +V+ + ++ V R N KQ + TG Sbjct: 60 PLQLRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLL-KQDFS------TTG 112 Query: 7564 SDQVYCWDITWLPRTVKGLFFYAYVVIDIFDKTIVGWSVHEEEHEQYSRDLFERTLQGRK 7743 +Q + D+T++ +T + + Y ++D+ + I+G+S ++ E ++ R Sbjct: 113 LNQKWTADMTYI-QTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRT 171 Query: 7744 IALRAL-HADNGHPMKGITLMALLTSLNVEISHNRPRVSNDNPFIESFFKTLKYRVNYPL 7920 I + H D G LT L++ S++R DN +ESF +LK YP+ Sbjct: 172 ITGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPV 231 Query: 7921 R-FRDLMHAREWMASFVN-WYNTEHLHSAIGHVTPHQL 8028 F D A + +V+ +YN + +HS++G+ TP Q+ Sbjct: 232 PVFEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQV 269 >ref|NP_958675.1|reverse transcriptase Length = 328 Score = 61.2 bits (147), Expect = 5e-09 Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 7/196 (3%) Frame = -2 Query: 3130 LHEEIHTGSYRAQPVKR--VYIPKTDGQKRPLGITAIE--DKLVQQAVVTVLNQIYETEF 2963 L E+ G+Y P + VY PK P I+A+E D+LVQ A+ ++ I+E Sbjct: 49 LQAELKAGNYERGPYREFLVYEPK------PRLISALEFKDRLVQHALCNIVAPIFEAGL 102 Query: 2962 YGFSYGYRPGRAPENALDALATAILKRPINWILDADLQKFFDSIPHDKLMALISIRV--- 2792 ++Y RP + + + + + L +D KFF SI L A+I ++ Sbjct: 103 LPYTYACRPDKGTHAGVCHVQAELRRTRATHFLKSDFSKFFPSIDRAALYAMIDKKIHCA 162 Query: 2791 GDKRILRLIGKWLKTGYIEDGKRYRQTEGTPQGSVISPLLANIYLHYVVDEWVEQERRRR 2612 +R+LR++ + D + G P GS+ S L AN+Y VD + E ++R Sbjct: 163 ATRRLLRVV--------LPD-----EGVGIPIGSLTSQLFANVY-GGAVDRLLHDELKQR 208 Query: 2611 NNGEVIIIRYADDLVL 2564 + RY DD+V+ Sbjct: 209 H-----WARYMDDIVV 219 >ref|NP_996568.1|reverse transcriptase Length = 328 Score = 61.2 bits (147), Expect = 5e-09 Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 7/196 (3%) Frame = -2 Query: 3130 LHEEIHTGSYRAQPVKR--VYIPKTDGQKRPLGITAIE--DKLVQQAVVTVLNQIYETEF 2963 L E+ G+Y P + VY PK P I+A+E D+LVQ A+ ++ I+E Sbjct: 49 LQAELKAGNYERGPYREFLVYEPK------PRLISALEFKDRLVQHALCNIVAPIFEAGL 102 Query: 2962 YGFSYGYRPGRAPENALDALATAILKRPINWILDADLQKFFDSIPHDKLMALISIRV--- 2792 ++Y RP + + + + + L +D KFF SI L A+I ++ Sbjct: 103 LPYTYACRPDKGTHAGVCHVQAELRRTRATHFLKSDFSKFFPSIDRAALYAMIDKKIHCA 162 Query: 2791 GDKRILRLIGKWLKTGYIEDGKRYRQTEGTPQGSVISPLLANIYLHYVVDEWVEQERRRR 2612 +R+LR++ + D + G P GS+ S L AN+Y VD + E ++R Sbjct: 163 ATRRLLRVV--------LPD-----EGVGIPIGSLTSQLFANVY-GGAVDRLLHDELKQR 208 Query: 2611 NNGEVIIIRYADDLVL 2564 + RY DD+V+ Sbjct: 209 H-----WARYMDDIVV 219 >ref|NP_996616.1|hypothetical protein predicted by GeneMark Length = 328 Score = 61.2 bits (147), Expect = 5e-09 Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 7/196 (3%) Frame = -2 Query: 3130 LHEEIHTGSYRAQPVKR--VYIPKTDGQKRPLGITAIE--DKLVQQAVVTVLNQIYETEF 2963 L E+ G+Y P + VY PK P I+A+E D+LVQ A+ ++ I+E Sbjct: 49 LQAELKAGNYERGPYREFLVYEPK------PRLISALEFKDRLVQHALCNIVAPIFEAGL 102 Query: 2962 YGFSYGYRPGRAPENALDALATAILKRPINWILDADLQKFFDSIPHDKLMALISIRV--- 2792 ++Y RP + + + + + L +D KFF SI L A+I ++ Sbjct: 103 LPYTYACRPDKGTHAGVCHVQAELRRTRATHFLKSDFSKFFPSIDRAALYAMIDKKIHCA 162 Query: 2791 GDKRILRLIGKWLKTGYIEDGKRYRQTEGTPQGSVISPLLANIYLHYVVDEWVEQERRRR 2612 +R+LR++ + D + G P GS+ S L AN+Y VD + E ++R Sbjct: 163 ATRRLLRVV--------LPD-----EGVGIPIGSLTSQLFANVY-GGAVDRLLHDELKQR 208 Query: 2611 NNGEVIIIRYADDLVL 2564 + RY DD+V+ Sbjct: 209 H-----WARYMDDIVV 219 >ref|NP_758929.1|ORF37 Length = 303 Score = 59.7 bits (143), Expect = 2e-08 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 7/193 (3%) Frame = -2 Query: 3055 QKRPLGITAIEDKLVQQAVVTVLNQIYETEFYGFSYGYRPG-RAPENALDALATAILKRP 2879 ++R + +D++V +A+ V+ +++ + SY R G RAP AL L I K Sbjct: 70 KRRLISAPHFKDRVVHRAIYNVIEPLFDKTYIYDSYACRRGERAPTKALTGLQYFIKKVE 129 Query: 2878 IN----WILDADLQKFFDSIPHDKLMALISIRVGDKRILRLIGKWLKTGYIEDGKRYRQT 2711 + L AD+ ++F SI H L +++ ++ +R L L+ YI D Sbjct: 130 SKHGKAYALKADISRYFSSIDHQVLKSILEAKIQCQRTLDLLF------YIIDNSPCESM 183 Query: 2710 E-GTPQGSVISPLLANIYLHYVVDEWVEQERRRRNN-GEVIIIRYADDLVLGFQYKTEAE 2537 G P G++ S + AN+YLH E +R ++ G IRY DD + K Sbjct: 184 GVGIPLGNLTSQIFANVYLH-------ELDRYAKHALGAKHYIRYMDDFAIIHHDKAVLH 236 Query: 2536 RYLEALSERVQTY 2498 ++ + + E + Y Sbjct: 237 QWRKDIEEFLHLY 249 >ref|NP_445672.1|putative helicase Length = 601 Score = 58.2 bits (139), Expect = 5e-08 Identities = 105/510 (20%), Positives = 208/510 (40%), Gaps = 26/510 (5%) Frame = -3 Query: 13848 QLRPIQTAAIAKILASDDNFILASRTASGKTEAAFLPILSKVDFNDSGVQVLYISPLIAL 13669 QL Q A+ L SD N ++ + T +GK+ A L + ++ +V+Y PL AL Sbjct: 7 QLNEFQKKALQSFLMSDKNLLITAPTGTGKSFLAMLMAM------ETKSRVVYTVPLRAL 60 Query: 13668 ---INDQFY-RIEELCKNLDVTV---TKWHGEANKTLKDRLIKQPTGIVLITPESLEAMF 13510 +ND F+ ++ L +V ++ + E + L++R ++ T E +A+F Sbjct: 61 ALQLNDDFHNKVAPLVNGYADSVALTSEVYEEDPENLEER-------VIFTTYEKADAIF 113 Query: 13509 VNK-PFNVKKLFSNLKYVVIDEVHSFIGTDRGTQLKSILSRLQRVNSQSFSIVGLSATIG 13333 P+ ++ ++IDE+H+ +RG ++++++ ++ IV +SATI Sbjct: 114 RRHYPWT-----DRIETLIIDEIHNIGDKERGKAIENLIAYAM---NEGIRIVAMSATIP 165 Query: 13332 DYNEAKKFIGNE----KNTKVLLDRTAKEINSVFRFFXXXXXXXXXXXXKDLYIETKDNK 13165 D N+ + I E + L + K N + +F + K+ Sbjct: 166 DVNKIAEIIDAEIIKTDERPIPLYKAVKIGNKL--YFEDGDVIELKEDFIKKMVR-KNKV 222 Query: 13164 VLIFPNSRGRAEEV-AVKLKKISERVKGHPHYFSHHSSVDREVREYVEYFAKNNKRHNFC 12988 V+IF ++R +AEE+ + +K +V +F H+ +D E + + + K +N Sbjct: 223 VMIFTSTRKKAEELYMIYDRKFQNKVA----FF--HAGLDAETKLRLLEETRQGK-YNII 275 Query: 12987 ISCTSTLELGIDIG-----------SVDEVVQIDATHSIASL--IQRVGRSGRKDGESSN 12847 +S T+ L G++ + E + I + Q GR+GR + Sbjct: 276 VS-TTALSQGVNFPFYAVVFDDLKLPIIEYGRFTGWKQITPIEFDQICGRAGRPGYDEEG 334 Query: 12846 LFLYATTQWSLLQSIACWLLYNESFIEPPEKNEKPYDILVHQALSITKSHSGILLTELIK 12667 L + T + + ++ + +L L++ + +++ Sbjct: 335 LCIIEATDIRQAEKL------KRTYFNTSYGTITGHHVLEDFLLALISKYIYAKPDRIME 388 Query: 12666 QLKENSAFNSIEQSEVEEILQNLIEIDFLEKLQREVIVGVQGEKVVNSREFYSVFKTEEN 12487 K +F +I + V+E L+ L + + V + G V S Y K Sbjct: 389 ATKHTISFRNISEELVKEKLEELKNAKLIGEDGTGYFVTLYGRAVAES---YFDVKDAIT 445 Query: 12486 FKVVNAGNTIGEIPFSPQIIEDENILLSAK 12397 + V N + E I+E+EN+L ++K Sbjct: 446 YHDVLTKNNVKEEEIINAILENENVLNASK 475 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 56.2 bits (134), Expect = 2e-07 Identities = 57/241 (23%), Positives = 92/241 (38%), Gaps = 8/241 (3%) Frame = +1 Query: 7321 KRVVRKLEAETRQAIIGHCNTERYQDLNPHEIVPLLLNEGVYLA--------SVSTFYRV 7476 KR R + + I E +Q ++ LL EG+ +A +V V Sbjct: 40 KRSARAQHDDWLKREIQRVYDENHQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGV 99 Query: 7477 LKAEHLVHHRSNTRPKQGYGKPPERLATGSDQVYCWDITWLPRTVKGLFFYAYVVIDIFD 7656 L+ + + S G + +A DQ++ D T++ T +G F Y +ID+F Sbjct: 100 LRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVS-TWQG-FVYVAFIIDVFA 157 Query: 7657 KTIVGWSVHEEEHEQYSRDLFERTLQGRKIALRALHADNGHPMKGITLMALLTSLNVEIS 7836 IVGW V + D E+ L R+ + H+D G + L + S Sbjct: 158 GYIVGWRVSSSMETTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLAS 217 Query: 7837 HNRPRVSNDNPFIESFFKTLKYRVNYPLRFRDLMHAREWMASFVNWYNTEHLHSAIGHVT 8016 S DN ES K V + +++ ++V+WYN L +GH Sbjct: 218 TGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTP 277 Query: 8017 P 8019 P Sbjct: 278 P 278 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 49.3 bits (116), Expect = 2e-05 Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 8/183 (4%) Frame = +1 Query: 7567 DQVYCWDITWLPRTVKGLFFYAYVVIDIFDKTIVGWSVHEEEHEQYSRDLFERTLQGRKI 7746 +Q++ D T++ T +G + A+V ID+F + IVGW V + D E+ L R+ Sbjct: 111 NQLWVSDFTYVS-TWQGWLYVAFV-IDVFARRIVGWRVSSSMTTDFVLDALEQALYARQP 168 Query: 7747 ALRAL---HADNGHPMKGITLMALLTSLNVEISHNRPRVSNDNPFIES---FFKTLKYRV 7908 H+D G I L +E S S DN E+ +KT Sbjct: 169 GEDGTLIHHSDRGSQYVSIRYSERLAEAGIEPSVGSRGDSYDNALAETINGLYKTELIHR 228 Query: 7909 NYPLRFRDLMH--AREWMASFVNWYNTEHLHSAIGHVTPHQLRTGEARCIFERRNLVMQQ 8082 P + R+ + EW+A WYN L +G++ P + EA + RN Sbjct: 229 RAPWKTRESVELATLEWVA----WYNHHRLMEPLGYIPPAE---AEANYYRQLRNAADVS 281 Query: 8083 ART 8091 A T Sbjct: 282 ALT 284 >ref|NP_543070.1|putative replication protein DnaC Length = 252 Score = 44.7 bits (104), Expect = 5e-04 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Frame = -3 Query: 25782 QVHCNAARNLTRDQLLSLSDCSFIRRGENILITGATGCGKSYLACALG----RQACSLGY 25615 +V+ +AARNL + + + + G ++++TG+ G GK++LA ++ R + Sbjct: 78 EVNPDAARNLAACRRYAENWPDMLENGTSLVMTGSCGTGKNHLAVSMAKHIIRNYLASVE 137 Query: 25614 RTLYFGMNRFLERIAQTKLDGTFVRVLNQIERTHLIILDDFGLQPLDATTRIALLQILED 25435 T + R ++ + + T V+ L+I+D+ G+Q A L +I+ Sbjct: 138 ITDVMRLTRAVKNCWRNDSEKTADEVIEHYASMDLLIIDEVGVQFGSAAEMAILQEIINA 197 Query: 25434 RYGK--QAIMITSQLPVAQWHDVIGEPTIADGIMD 25336 RY I+I++ P W + P IAD I D Sbjct: 198 RYESILPTILISNLSPEELWAFI--SPRIADRITD 230 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 41.2 bits (95), Expect = 0.006 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 5/161 (3%) Frame = +1 Query: 7558 TGSDQVYCWDITWLPRTVKGLFFYAYVVIDIFDKTIVGWSVHEEEHEQYSRDLFERTLQG 7737 T +QV+C D+T++ + + Y VV+D+F + VGW++ + + E + Sbjct: 135 TEPNQVWCGDVTYIWTGKR--WAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWET 192 Query: 7738 R-KIALRALHADNGHPMKGITLMALLTSLNVEISHNRPRVSNDNPFIESFFKTLKYR--- 7905 R K H+D G LL + S +R DN +E FF++LK Sbjct: 193 RGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMP 252 Query: 7906 -VNYPLRFRDLMHAREWMASFVNWYNTEHLHSAIGHVTPHQ 8025 V Y + F + HA V +Y+ H G + P++ Sbjct: 253 VVGY-VSFSEAAHA--ITDYIVGYYSALRPHEYNGGLPPNE 290 >ref|NP_803254.1|integrase Length = 348 Score = 40.4 bits (93), Expect = 0.010 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = -2 Query: 17695 SIMPKTKKPATLHWLLHSYATHLLEAGTDQQYIQELLGHKS-SKTTETYTHACEQSLLKI 17519 S+ P K +H L HSYA++L+ G D + EL+ H + ++T +TY+H + Sbjct: 288 SVFPNLK----IHHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQA 343 Query: 17518 SSPFD 17504 S FD Sbjct: 344 MSIFD 348 >ref|NP_695147.1|integrase Length = 391 Score = 40.0 bits (92), Expect = 0.013 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -2 Query: 17665 TLHWLLHSYATHLLEAGTDQQYIQELLGHKSSKTT-ETYTHACEQ 17534 T H L H++A+ LL G D Y+ + LGHK TT TYTH ++ Sbjct: 326 TCHALRHTHASLLLYEGRDISYVSKRLGHKDIMTTYNTYTHVIQE 370 >ref|NP_624303.1|integrase fragment Length = 112 Score = 40.0 bits (92), Expect = 0.013 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -2 Query: 17674 KPATLHWLLHSYATHLLEAGTDQQYIQELLGHKSSKTTE-TYTH 17546 K T H L HS+A++LL G QY+ E LGH + TE Y+H Sbjct: 49 KNVTFHALRHSHASYLLSKGVSIQYVSERLGHSNVGITENVYSH 92 >ref|NP_061591.2|integrase Length = 348 Score = 39.3 bits (90), Expect = 0.022 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = -2 Query: 17662 LHWLLHSYATHLLEAGTDQQYIQELLGHKS-SKTTETYTHACEQSLLKISSPFD 17504 +H L HSYA++L+ G D + EL+ H + ++T +TY+H + S FD Sbjct: 295 IHHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD 348 >ref|NP_818023.1|gp50 Length = 424 Score = 37.7 bits (86), Expect = 0.063 Identities = 18/41 (43%), Positives = 22/41 (53%) Frame = -2 Query: 17665 TLHWLLHSYATHLLEAGTDQQYIQELLGHKSSKTTETYTHA 17543 TLH H+ AT L G D+Q E+LGH S + Y HA Sbjct: 361 TLHSARHTAATVLRSNGVDEQTRMEILGHNSPEVARVYAHA 401 >ref|NP_612851.1|putative integrase Length = 349 Score = 37.7 bits (86), Expect = 0.063 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = -2 Query: 17662 LHWLLHSYATHLLEAGTDQQYIQELLGHKSSKTT-ETYTHACEQSLLKISSPFDNL 17498 +H L HS+A+ L+E G I E LGH+ +TT +TY+H +S+ D L Sbjct: 293 IHDLRHSHASLLIELGFTPLLISERLGHEKVQTTLDTYSHLYPNKDTMVSNKLDEL 348 >ref|NP_076752.1|integrase Length = 394 Score = 37.7 bits (86), Expect = 0.063 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Frame = -2 Query: 17659 HWLLHSYATHLLEAGTDQQYIQELLGHKSSK-TTETYTHACEQSLLKISSPFDNL 17498 H HS+A+ LL A + IQE LGH S K T +TY+H + +K F+++ Sbjct: 337 HGFRHSHASLLLNADVPYKEIQERLGHASIKMTMDTYSHLESDNKIKAVERFESI 391 >ref|NP_795429.1|putative integrase Length = 362 Score = 37.4 bits (85), Expect = 0.083 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Frame = -2 Query: 17665 TLHWLLHSYATHLLEAGTDQQYIQELLGHKSSKTT-ETYTHACEQSLLKISSPFD 17504 T+H H++A+ L E+G + +Q LGH +TT YTH + ++ I + F+ Sbjct: 299 TIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAIDDIGTKFN 353 >ref|YP_024516.1|putative DNA polymerase Length = 1072 Score = 37.4 bits (85), Expect = 0.083 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 23/166 (13%) Frame = -1 Query: 14717 EITDVGGFD---------FGMVVMKYYEGYIKDDEQLRRNALKWLKGEYRTKT-EAKQDL 14568 E+TDVGG+D F +++++ IK ++++ K K EY K E K+ L Sbjct: 335 EVTDVGGYDKPLEDFKLWFVTKLLRFFSDKIK---EIQKENKKIAKKEYDVKAPEYKEWL 391 Query: 14567 --GVREVINDLNYYDMLKNFC-----KLFVSMGYSGFMVNL------DEAINLYKISTSV 14427 + E + +L+ D K F K ++ +G S +VN+ DE IN+ + S Sbjct: 392 ENKLNETVVELD--DTEKKFRVSELEKKYIQLGLSPEIVNMNLVMDNDEFINIAEQSPEY 449 Query: 14426 MREKNYEKILTIYNDCFQGKVANLFFNFAGTKEVLENERRGLFSYN 14289 M +Y K T+ NL + K+V+ + G F+Y+ Sbjct: 450 MGLSDYAKSYTL------NTAINLINEYRDVKDVVNDIDGGNFNYD 489 >ref|NP_663635.1|putative integrase Length = 359 Score = 37.4 bits (85), Expect = 0.083 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = -2 Query: 17683 KTKKPATLHWLLHSYATHLLEAGTDQQYIQELLGHKSSKTT-ETYTHACEQSLLKISSPF 17507 K +P +H H++A+ L E+G + +Q LGH KTT YTH + + KI F Sbjct: 294 KEIEPIRIHAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHITKFAKDKIGQQF 353 Query: 17506 DN 17501 + Sbjct: 354 SD 355 >ref|NP_076635.1|integrase Length = 359 Score = 37.4 bits (85), Expect = 0.083 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = -2 Query: 17683 KTKKPATLHWLLHSYATHLLEAGTDQQYIQELLGHKSSKTT-ETYTHACEQSLLKISSPF 17507 K +P +H H++A+ L E+G + +Q LGH KTT YTH + + KI F Sbjct: 294 KEIEPIRIHAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHITKFAKDKIGQQF 353 Query: 17506 DN 17501 + Sbjct: 354 SD 355 >ref|YP_025047.1|putative integrase Length = 389 Score = 37.0 bits (84), Expect = 0.11 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Frame = -2 Query: 17722 ACKKC*NMHSIMPKTKKPA----TLHWLLHSYATHLLEAGTDQQYIQELLGHKS-SKTTE 17558 AC K +H I K + P T H L HS+ ++L+ G D YI + LGH + T + Sbjct: 308 ACNKA--LHVIQNKAEIPENKQITFHGLRHSHVSYLISKGVDIYYISKRLGHSDVTITMK 365 Query: 17557 TYTH 17546 Y H Sbjct: 366 VYGH 369 >ref|NP_680502.1|integrase Length = 385 Score = 36.6 bits (83), Expect = 0.14 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Frame = -2 Query: 17659 HWLLHSYATHLLEAGTDQQYIQELLGHKS-SKTTETYTH 17546 H L H++ ++LL G D QY+ LGH++ TT+ YTH Sbjct: 330 HGLRHTHGSYLLYKGLDIQYVSHRLGHENVGITTKIYTH 368 >ref|NP_695029.1|Integrase Length = 374 Score = 36.2 bits (82), Expect = 0.18 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Frame = -2 Query: 17683 KTKKPATLHWLLHSYATHLLEAGTDQQYIQELLGHKS-SKTTETYTHACEQ 17534 K P T+H L H++A+ LL G D + + LGH S + T +TY H ++ Sbjct: 308 KISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHIIKE 358 >ref|NP_996675.1|integrase Length = 374 Score = 36.2 bits (82), Expect = 0.18 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Frame = -2 Query: 17683 KTKKPATLHWLLHSYATHLLEAGTDQQYIQELLGHKS-SKTTETYTHACEQ 17534 K P T+H L H++A+ LL G D + + LGH S + T +TY H ++ Sbjct: 308 KISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHIIKE 358 >ref|NP_511007.1|integrase Length = 384 Score = 35.8 bits (81), Expect = 0.24 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = -2 Query: 17674 KPATLHWLLHSYATHLLEAGTDQQYIQELLGHKSSKTTETY 17552 +P TLH L H++ +EAG D Y+ + LGH TT Y Sbjct: 304 EPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKY 344 >ref|NP_046786.1|Int Length = 337 Score = 35.8 bits (81), Expect = 0.24 Identities = 19/58 (32%), Positives = 26/58 (44%) Frame = -2 Query: 17701 MHSIMPKTKKPATLHWLLHSYATHLLEAGTDQQYIQELLGHKSSKTTETYTHACEQSL 17528 M +I P H L HS+ATH + G +Q +LGH + T Y H + L Sbjct: 255 MKAIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYL 312 >ref|NP_878228.1|Int Length = 326 Score = 35.8 bits (81), Expect = 0.24 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = -2 Query: 17716 KKC*NMHSIMPKTKKPATLHWLLHSYATHLLEAGTDQQYIQELLGHKSSKTTETYTH 17546 K C + + P H L H++A+H + G + +Q++LGH S + T Y H Sbjct: 249 KFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAH 305 >ref|NP_839878.1|Int Length = 326 Score = 35.8 bits (81), Expect = 0.24 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = -2 Query: 17716 KKC*NMHSIMPKTKKPATLHWLLHSYATHLLEAGTDQQYIQELLGHKSSKTTETYTH 17546 K C + + P H L H++A+H + G + +Q++LGH S + T Y H Sbjct: 249 KFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAH 305 >ref|NP_438114.1|integrase-like protein Length = 365 Score = 35.4 bits (80), Expect = 0.31 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = -2 Query: 17674 KPATLHWLLHSYATHLLEAGTDQQYIQELLGH-KSSKTTETYTHACEQS 17531 K T H H++A+ L EAG + QE LGH K + T + YTH ++S Sbjct: 303 KRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLSKKS 351 >ref|NP_795541.1|putative integrase Length = 384 Score = 35.4 bits (80), Expect = 0.31 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = -2 Query: 17674 KPATLHWLLHSYATHLLEAGTDQQYIQELLGH-KSSKTTETYTHACEQS 17531 K T H H++A+ L EAG + QE LGH K + T + YTH ++S Sbjct: 322 KRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLSKKS 370 >ref|NP_116524.1|integrase Length = 374 Score = 35.4 bits (80), Expect = 0.31 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = -2 Query: 17671 PATLHWLLHSYATHLLEAGTDQQYIQELLGHKS-SKTTETYTHACEQ 17534 P T+H L H++A+ LL G D + + LGH S + T +TY H ++ Sbjct: 312 PLTIHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHIIKE 358 >ref|NP_075464.1|integrase Length = 401 Score = 35.0 bits (79), Expect = 0.41 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -2 Query: 17674 KPATLHWLLHSYATHLLEAGTDQQYIQELLGHKSSKTT-ETYTHACEQSLLKISSPFDNL 17498 K T H H++ T L+E + I + +GH KTT YTH E+ +++ +N+ Sbjct: 340 KKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI 399 >ref|NP_803307.1|integrase Length = 401 Score = 35.0 bits (79), Expect = 0.41 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -2 Query: 17674 KPATLHWLLHSYATHLLEAGTDQQYIQELLGHKSSKTT-ETYTHACEQSLLKISSPFDNL 17498 K T H H++ T L+E + I + +GH KTT YTH E+ +++ +N+ Sbjct: 340 KKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI 399 >ref|NP_058467.1|integrase Length = 401 Score = 35.0 bits (79), Expect = 0.41 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -2 Query: 17674 KPATLHWLLHSYATHLLEAGTDQQYIQELLGHKSSKTT-ETYTHACEQSLLKISSPFDNL 17498 K T H H++ T L+E + I + +GH KTT YTH E+ +++ +N+ Sbjct: 340 KKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI 399 >ref|NP_061531.1|integrase Length = 369 Score = 35.0 bits (79), Expect = 0.41 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -2 Query: 17665 TLHWLLHSYATHLLEAGTDQQYIQELLGHKSSKTTETYTH 17546 T+H L H+ A L+ AG +++LLGH + TE Y H Sbjct: 287 TIHDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTERYAH 326 >ref|NP_108680.1|integrase Length = 374 Score = 35.0 bits (79), Expect = 0.41 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = -2 Query: 17671 PATLHWLLHSYATHLLEAGTDQQYIQELLGHKS-SKTTETYTHACEQ 17534 P T+H L H++A+ LL G D + + LGH S + T +TY H ++ Sbjct: 312 PLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHIIKE 358 >ref|NP_076573.1|integrase Length = 374 Score = 35.0 bits (79), Expect = 0.41 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = -2 Query: 17671 PATLHWLLHSYATHLLEAGTDQQYIQELLGHKS-SKTTETYTHACEQ 17534 P T+H L H++A+ LL G D + + LGH S + T +TY H ++ Sbjct: 312 PLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHIIKE 358 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 142,826,180 Number of Sequences: 14420 Number of extensions: 2982121 Number of successful extensions: 8345 Number of sequences better than 0.5: 38 Number of HSP's better than 0.5 without gapping: 4975 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8334 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 13059710879 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig60 (34,627 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_038305.1|ORF5 42 0.004 ref|NP_862860.1|gp21 37 0.13 ref|NP_958516.1|putative antirepressor 36 0.29 ref|NP_203435.1|hypothetical protein 35 0.49 >ref|NP_038305.1|ORF5 Length = 260 Score = 42.0 bits (97), Expect = 0.004 Identities = 47/145 (32%), Positives = 66/145 (45%), Gaps = 5/145 (3%) Frame = -1 Query: 34375 TRDAKRDQPSPAPPSYGNCSGSTRTSTWILIGQSGTGKSYLAGGLCHEALK-LGYH---- 34211 TR+ K D + G G +LIG +G GKS+LA + ALK L H Sbjct: 97 TRNQKEDLKNVRSQLRGYLDGQDYNI--VLIGNTGVGKSHLA----YSALKALSDHTKKM 150 Query: 34210 ALFRTMDDLIQTIRFKEITAAAAREYKRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQL 34031 +F + DL+ I KE A +R+ A LV+DD+ EK L + L Sbjct: 151 GVFINVVDLLAKI--KEDFNLEAEYIRRISEAEWLVLDDL---GTEKVTEWSSGILYSIL 205 Query: 34030 HEQTSFIITTNKSPKEWAEMLGDEV 33956 +++T IITTN SP++ G V Sbjct: 206 NKRTKTIITTNLSPQDILGTYGKRV 230 >ref|NP_862860.1|gp21 Length = 256 Score = 37.0 bits (84), Expect = 0.13 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Frame = -1 Query: 34282 GQSGTGKSYLAGGLCHEALKLGYH-ALFRTMDDLIQTIRFKEITAAAARE---YKRLLSA 34115 G++GTGKS+LA + + A+F + DL+ I+ A ++E ++ SA Sbjct: 125 GEAGTGKSHLAFAMMKYLSETTKEIAIFINVTDLLMKIK-----ADFSQEEFLVNKIASA 179 Query: 34114 HLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLG 33965 LV+DD+ M EK L N L+++ + +ITTN + +E + G Sbjct: 180 KFLVLDDLGM---EKDSEWSFSILYNILNKRANTVITTNLTAQEIQKRYG 226 >ref|NP_958516.1|putative antirepressor Length = 253 Score = 35.8 bits (81), Expect = 0.29 Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 2/104 (1%) Frame = -1 Query: 24766 LIAFENRPIRRYFDEATETWYFSIVDVIAILSESVNPRDYWFRMKVRVKSDDGL--QLST 24593 L FEN+ +R E YF DV IL RD + V +D L Q+ST Sbjct: 7 LFNFENQQVRTL--TVDEEPYFVGKDVATILGYKNGSRD----INTHVDEEDKLRYQIST 60 Query: 24592 VCRQLKMKAPDGKMRATDCVNVEGLLRIIQSIPSPKAEPFKQWL 24461 G+MR +N GL +I S P A+ FK+W+ Sbjct: 61 A----------GQMRDQILINESGLYSLILSSKLPNAKKFKRWV 94 >ref|NP_203435.1|hypothetical protein Length = 157 Score = 35.0 bits (79), Expect = 0.49 Identities = 19/45 (42%), Positives = 28/45 (62%) Frame = -2 Query: 23796 SDRERALLRKQVVRLRKQGKSNKEVAELLGLSVQTSSRWWQWYQR 23662 S E A LRK+ + L + ++EVAE LG+S T S+W + Y+R Sbjct: 20 SKAEWARLRKRALALVDEDWKSREVAEELGVSQDTVSKWVERYRR 64 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 182,561,247 Number of Sequences: 14420 Number of extensions: 3938677 Number of successful extensions: 11639 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 6311 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11617 length of database: 3,019,461 effective HSP length: 114 effective length of database: 1,375,581 effective search space used: 15718764087 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig61 (46,643 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 135 5e-31 ref|NP_046572.1|ABC transporter 105 4e-22 ref|NP_932589.1|hypothetical protein 84 9e-16 ref|NP_813780.1|internal virion protein D 67 2e-10 ref|NP_052116.1|internal virion protein D 67 2e-10 ref|NP_046584.1|putative transglycosylase 60 2e-08 ref|NP_523341.1|internal virion protein D 50 2e-05 ref|NP_848303.1|internal virion protein 50 3e-05 ref|NP_663692.1|putative lysin 49 6e-05 ref|NP_112716.1|LYS 47 1e-04 ref|NP_108734.1|lysin 47 1e-04 ref|NP_996722.1|lysin 47 2e-04 ref|NP_944261.1|putative TnpA transposase 46 4e-04 ref|NP_690649.1|morphogenesis protein 46 4e-04 ref|YP_006507.1|Sit 45 6e-04 ref|NP_040700.1|hypothetical protein 45 8e-04 ref|NP_690779.1|ORF46 44 0.002 ref|NP_040733.1|morphogenesis protein B 41 0.009 ref|NP_943903.1|gp47 recombination endonuclease subunit 36 0.29 >ref|NP_945090.1|gp59 Length = 429 Score = 135 bits (339), Expect = 5e-31 Identities = 83/324 (25%), Positives = 148/324 (45%), Gaps = 7/324 (2%) Frame = +2 Query: 22433 RRVITASSVGTLIEWYDFYIFGSLAKIISEQFFPKDNPXXXXXXXXXXXXXGFVVRPFGA 22612 RR + A VG EW+DF + + II++ FFP + GF +RP G Sbjct: 20 RRAVIAVIVGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLLSVSTIGVGFFMRPIGG 79 Query: 22613 LFFGRLGDLIGRKYTFLVTLIIMGGSTFAIGLVPGYKTIGFVAPAIVFVLRXXXXXXXXX 22792 + G + D +GR+ VT+ +M T IG P YK G AP ++ V R Sbjct: 80 IVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGG 139 Query: 22793 XXXXXXTYVAEHSPSDKRGFWTSFIQTTATIGLFVSLGVILIVRQTLGVETFTDWGWRIP 22972 Y+ E P+++ G++TS+IQ + + ++ + + + + L + WGWRIP Sbjct: 140 EMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWRIP 199 Query: 22973 FLLSIFLVAISVYIRMKMSESPAFAKLKKEGKTSTNPLAE---SFKKKDNLKMXXXXXXX 23143 FLL + L + +YIR ++++ P F ++ G+ + P+ E SF ++ Sbjct: 200 FLLGLGLGPVGIYIRSRLND-PGFPADERLGECA--PVVEVVRSFSRE----------AL 246 Query: 23144 XXXXXXXXWYTGQFYALSFLQNACNVEFVQSNYIISIALLIGTPFFI----IFGALSDKI 23311 W + L ++ + + IA+L+G + + G LSD Sbjct: 247 VGFGLVVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLF 306 Query: 23312 GRKYIMMTGMLIAVVAYRPIYTVM 23383 GR++ + +L+A+VA P++ ++ Sbjct: 307 GRRWFLAGALLVAIVAAYPLFAML 330 >ref|NP_046572.1|ABC transporter Length = 705 Score = 105 bits (262), Expect = 4e-22 Identities = 102/487 (20%), Positives = 211/487 (43%), Gaps = 6/487 (1%) Frame = +2 Query: 39119 LARGAFRYAERLISHNITFKILAKLRLWFYDAIEPLAPARLMHFKSGDLLQRVVDDIQSL 39298 L R F + + +++K+ ++ +++ + L + + G+++ R D I Sbjct: 217 LIRCIFDFVRSYLIIKLSYKVDKEMSNVYFNKVTKLPINFFENREDGEVISRFNDGIYIK 276 Query: 39299 ENIYTRVLGPPLTALLVTALMWFLLGSYSVSAAMIILCFHTLAGIGVPILTMQLSRGISV 39478 + + + +L+ L L + ++ IIL L+ + IL + + Sbjct: 277 DFFSANFVTAIIDIILILGLGVILYRTNNILFLTIILPILLLSCLA--ILFFDHLKKKNQ 334 Query: 39479 GIMKHKAEEQVLALDLIQGIGELQLYGNLPAHLAAMQSAETGKLQLQRKNAVIEGLHESL 39658 +M+ KA+ L ++ ++ + + L +L A +E L Sbjct: 335 KLMEDKAKSTSLLINFLKNMTTVYSLNKTSFFLEKFHLTYDKQLNSTFSVAKAVISNEIL 394 Query: 39659 TGLLMNGAVITILWTLIPSISSGATANGIALSVITLA--VMASFEPFLPLPSTIKHIEAD 39832 GL+ N I ILW + + + + G L + TLA +++S + L + S ++ Sbjct: 395 KGLIQNSFTIIILWVGTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHV- 453 Query: 39833 QHAGERLFEILDAKPETIAPANPIPFPSEHAIQVKRLSFTYPGSTAKALDSLSFSVLPGE 40012 A R F++++ + + N I+ L+ ++ ++ + + Sbjct: 454 --ASIRFFDVVNYPVQQDSNENLTELDFIQNIKTVNLNIG-ADPMRYIVEDINLILDRKD 510 Query: 40013 HIAIVGPSGAGKSTITALFMRFWNSREGCINIGGHNITLFDPEELRRNIALVSQKTYLFA 40192 + I+G SG GKST + + + I + G +I +D +R+ I + + +LF Sbjct: 511 KVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFK 570 Query: 40193 ETIRENLTLAAPGATDDDLKKALTAAGLSHFASKLDEW----CGQHGMKLSGGERQRIAI 40360 TI+ENL + ++++ A + F LD+ ++G LS G++QR+A+ Sbjct: 571 GTIKENLCMGEI-FDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLAL 629 Query: 40361 ARILLQRAPIMILDEATANLDGITEKEVTETLTAISAGKTLITITHRLKAMEKYHRIFVL 40540 AR +L + ++ILDE+ +N+D K + ETL + +I ITH + KY++ V Sbjct: 630 ARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDC--LIILITHNDPSNFKYNKKLVF 687 Query: 40541 EKGKIVE 40561 +I+E Sbjct: 688 RNNRIIE 694 Score = 85.5 bits (210), Expect = 4e-16 Identities = 89/402 (22%), Positives = 174/402 (43%), Gaps = 14/402 (3%) Frame = +3 Query: 37584 YIPQIFFALFTPLLIAGIILQGDPI----SGGILLITAPLIPLFM-----ILIGKSASAM 37736 YI F A F +I I++ G + + IL +T ++P+ + IL Sbjct: 274 YIKDFFSANFVTAIIDIILILGLGVILYRTNNILFLTI-ILPILLLSCLAILFFDHLKKK 332 Query: 37737 TDKQWKTMSRMSGFFLDVLQGLPTLKLFAQSQRQHDAFEKSGETFRHATMNVLKVAFLSS 37916 K + ++ + ++ L+ + T+ ++ + F + + ++T +V K + Sbjct: 333 NQKLMEDKAKSTSLLINFLKNMTTVYSLNKTSFFLEKFHLTYDKQLNSTFSVAKAVISNE 392 Query: 37917 LTLELVGTIGTAIVAVGIGLR-LMTGHLTFQHALFVLILTPDFYLPLRQLGTKFHAGMEG 38093 + L+ T I+ + +G R ++ ++ LF+ L L ++ + + Sbjct: 393 ILKGLIQNSFTIII-LWVGTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQA 451 Query: 38094 VSASKELFAILD----QSAPSAVQQVDFAVQEGAKKSPIHFSDVSYTYPGSSRPALEGIN 38261 AS F +++ Q + + ++DF I + Y +E IN Sbjct: 452 HVASIRFFDVVNYPVQQDSNENLTELDFIQNIKTVNLNIGADPMRYI--------VEDIN 503 Query: 38262 ATIPAEKTTAIIGPSGSGKSTLINLLLRFQDPGKGSITINDNPIHAIPLEAWHKQISWVP 38441 + + IIG SG+GKST L + SI +N I+ + K+I ++ Sbjct: 504 LILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYID 563 Query: 38442 QHPYLFNATLRENILLAKRDASSEEMEIALKKTGLATFIKTLPQGLETMIGEEGARLSGG 38621 ++P+LF T++EN+ + + E+E A + FI L + + E G+ LS G Sbjct: 564 ENPFLFKGTIKENLCMGE-IFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTG 622 Query: 38622 EAQRVALARAFLKNAPLLVLDEPTSHTDPELETVLRNSIQEL 38747 + QR+ALARA L +L+LDE S+ DP+ ++ ++ + Sbjct: 623 QKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM 664 >ref|NP_932589.1|hypothetical protein Length = 507 Score = 84.3 bits (207), Expect = 9e-16 Identities = 102/477 (21%), Positives = 182/477 (38%), Gaps = 17/477 (3%) Frame = +3 Query: 13611 LTLLDYSFIVGYXXXXXXXXXXFSKKASENVGEFFLSGRKLPWWIAGTGMVATTFAADTP 13790 + LLD GY K S +F++ R LPWWI G ++A +A+ Sbjct: 1 MQLLDMVIFAGYIGCIVMAGLVIGWKKSGTTKSYFMADRSLPWWILGCAILAANISAEHL 60 Query: 13791 LAVTGLVAKNGIAGNWVWWTFVSGGMLTVFFFARLWRRSNILTDLEFIEIRYSGTAAKFL 13970 + TG GIA T ++ + + ++ I T +F+ ++Y Sbjct: 61 IGTTGSAYAMGIAIGAFELTGALALVVAAWLAIPYFVKNQITTMPQFLAMKYDNRVRSMF 120 Query: 13971 RGFKALYFGLFINSIIIGWVNLAMYKIIRIMVPELNPEITIIALVVLTTVYSGLSGLWGV 14150 F + + L +N + ++ + I I + E+ + AL+ +YS + GL + Sbjct: 121 ATFWIVVYTL-VNLTAVSYMGALAFTSIGIPL-----EVGVWALIGFAVLYSAVGGLSSL 174 Query: 14151 SITDAVQFIIAMTGCIILAVLALQAPEVGGISGLQHALPAWMFDFYPSLSGSRETPVQDS 14330 TD +Q I +T I L A G+ ++ M Y L + ++ Sbjct: 175 VWTDFIQVGILLTAGIACTWFTLDA---YGVHVGSTSIAGSMVSLYKELPNHFQLVLEPG 231 Query: 14331 -----------GAFSLPFASFAAMAFVQWWASWYPGSEPGGGGYIAQRMMSAKDEKHSLL 14477 G + S + AF Q +I Q ++AK K + Sbjct: 232 HPAYENIPGILGVVGVFLGSLSYFAFNQ---------------FIVQGALAAKSVKEAQK 276 Query: 14478 ATLWFTVAHYCLRPWPWIIVALASLVMFPDLPLDQKEDGFVYVMKTVLPSGLKGLLVAAF 14657 + F L P II + + M + L + + +++ +P+G GL++AA Sbjct: 277 GMV-FAAFLKLLMPLVVIIPGIMAYSM-TNGSLTPSDKAYPWLIDNFMPAGFHGLVMAAL 334 Query: 14658 LAAYMSTLSTHLNWGTSYLINDFYQRFLKPEAEAAHLVKASKIVTGLIAIFSLFITFYVL 14837 AA +STL+ LN ++ D + KPE L+K ++ V + + L Sbjct: 335 FAAIISTLAAILNSISTMFTLDIV-KVHKPELSDKTLMKVARTVVVVCGAIGASLAIPFL 393 Query: 14838 KTITGAWEFIIQCGAGTGF------VLIFRWFWWRLNAWSEITSMLAPFLAYAWISF 14990 + A+ FI + GF V+ F +W+ N+ + I + A A + F Sbjct: 394 GNLDQAYHFIQEF---VGFVTPAMLVIFFAALYWKTNSNAAIAVTVFSVAANAIVKF 447 >ref|NP_813780.1|internal virion protein D Length = 1392 Score = 67.0 bits (162), Expect = 2e-10 Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Frame = -2 Query: 9076 VDKRNMTAKILGLSKIYFPLFEENLERYNVPLEMKYLAI-VESALNPTAVSSAGARGLWQ 8900 +++++ AK++ Y + + VP E + I +ES+ NP A S G GL Q Sbjct: 1 MNRKDEYAKLVAEGTPYDDAIRQAADANGVPYEYLHKKIFIESSFNPDAKSPTGPLGLGQ 60 Query: 8899 FMYGTGKMYGLETSSFIEDRYDPYKATAAASKHLRDLYNIY-GDWFLALAAYNSGPGNV 8726 F TGK YGL T EDR DP K+ A++++ RDL Y GD AYN G G + Sbjct: 61 FTKATGKAYGLMTD---EDRLDPIKSINASAQYTRDLMGTYKGDMLKVALAYNQGNGRL 116 >ref|NP_052116.1|internal virion protein D Length = 1320 Score = 67.0 bits (162), Expect = 2e-10 Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 3/116 (2%) Frame = -2 Query: 9019 LFEENLERYNVPLEM-KYLAIVESALNPTAVSSAGARGLWQFMYGTGKMYGLE-TSSFIE 8846 LF++ +++ V ++ + LA ES+ NP A S G +GL QF GT GL+ T + + Sbjct: 14 LFQKAADKHGVSYDLLRKLAFNESSFNPKAKSPTGPKGLMQFTKGTATALGLKVTDADDD 73 Query: 8845 DRYDPYKATAAASKHLRDLYNIY-GDWFLALAAYNSGPGNVNKAIRRAGGIKNYWA 8681 DRY+P A AA++HL DL Y GD A AYN G G N A + K WA Sbjct: 74 DRYNPELAVDAAARHLSDLIRKYDGDELKAALAYNQGEGR-NGAPQMQAYDKGDWA 128 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 59.7 bits (143), Expect = 2e-08 Identities = 48/139 (34%), Positives = 66/139 (47%), Gaps = 3/139 (2%) Frame = -2 Query: 8998 RYNV-PLEMKYLAIVESALNPTAVSSAGARGLWQFMYGTGKMYGLETSSFIEDRYDPYKA 8822 +YNV P + + ES N A S GA GL Q M T K G + + YDPY+ Sbjct: 1432 KYNVDPALIAAVIQQESGFNAKARSGVGAMGLMQLMPATAKSLG------VNNAYDPYQN 1485 Query: 8821 TAAASKHL-RDLYNIYGDWFLALAAYNSGPGNVNKAIRRAGGIKNYWAIWNYLPAETRGY 8645 +K+L + L G+ ALAAYN+GPGNV K GGI + NY+ Y Sbjct: 1486 VMGGTKYLAQQLEKFGGNVEKALAAYNAGPGNVIK----YGGIPPFKETQNYVKKIMANY 1541 Query: 8644 VPAF-IAVNYIMNYYKEHN 8591 + A + I +YY ++ Sbjct: 1542 SKSLSSATSSIASYYTNNS 1560 >ref|NP_523341.1|internal virion protein D Length = 1318 Score = 50.4 bits (119), Expect = 2e-05 Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Frame = -2 Query: 9028 YFPLFEENLERYNVPLEM-KYLAIVESALNPTAVSSAGARGLWQFMYGTGKMYGLE-TSS 8855 Y LF++ + V ++ + +A ES PTA S G G+ QF T GL T Sbjct: 12 YDGLFQKEADANGVSYDLLRKVAWTESRFVPTAKSKTGPLGIMQFTKATANALGLRVTDG 71 Query: 8854 FIEDRYDPYKATAAASKHLRDLYNIY-GDWFLALAAYNSGPGNV 8726 +DR +P A AA+KHL L + GD A AYN G G + Sbjct: 72 PDDDRLNPELAINAAAKHLAGLVGKFDGDELKAALAYNQGEGRL 115 >ref|NP_848303.1|internal virion protein Length = 1318 Score = 49.7 bits (117), Expect = 3e-05 Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Frame = -2 Query: 9028 YFPLFEENLERYNVPLEM-KYLAIVESALNPTAVSSAGARGLWQFMYGTGKMYGLE-TSS 8855 Y LF++ + V ++ + +A ES PTA S G G+ QF T GL T Sbjct: 12 YDGLFQKAADANGVSYDLLRKVAWTESRFVPTAKSKTGPLGIMQFTKATANALGLRVTDG 71 Query: 8854 FIEDRYDPYKATAAASKHLRDLYNIY-GDWFLALAAYNSGPGNV 8726 +DR +P A AA+KHL L + GD A AYN G G + Sbjct: 72 PDDDRLNPELAINAAAKHLAGLVGKFDGDELKAALAYNQGEGRL 115 >ref|NP_663692.1|putative lysin Length = 429 Score = 48.5 bits (114), Expect = 6e-05 Identities = 33/115 (28%), Positives = 52/115 (45%) Frame = -2 Query: 7909 QNHKVKKGETVASISRQYGVSSESIAELNNLSGRKQIRPGQVLKITGKASSAKSEARIXX 7730 + H V+ G+T++ I+ +G + + +A N+LS I GQV++ TG S A + Sbjct: 331 KTHIVQSGDTLSGIASNWGTNWQELARQNSLSNPNMIYTGQVIRFTGGQSGATA------ 384 Query: 7729 XXXXXXXXXSHKYHKVKKGETLSSIADKYALSVSELSXXXXXXXXXLIRPGQKLN 7565 + + V G+ LSSIA + +V L LI GQ LN Sbjct: 385 -----------RTYTVSSGDNLSSIASRLGTTVQSLVSMNGISNPNLIYAGQTLN 428 >ref|NP_112716.1|LYS Length = 429 Score = 47.4 bits (111), Expect = 1e-04 Identities = 33/111 (29%), Positives = 51/111 (45%) Frame = -2 Query: 7897 VKKGETVASISRQYGVSSESIAELNNLSGRKQIRPGQVLKITGKASSAKSEARIXXXXXX 7718 VK+G+T++ I+ +G + + +A N+LS I GQV++ TG S A + Sbjct: 335 VKQGDTLSGIASNWGTNWQELARQNSLSNPNVIYTGQVIRFTGGQSGATA---------- 384 Query: 7717 XXXXXSHKYHKVKKGETLSSIADKYALSVSELSXXXXXXXXXLIRPGQKLN 7565 + + V G+ LSSIA + +V L LI GQ LN Sbjct: 385 -------RTYTVSSGDNLSSIASRLGTTVQSLVSMNGISNPNLIYAGQTLN 428 >ref|NP_108734.1|lysin Length = 428 Score = 47.4 bits (111), Expect = 1e-04 Identities = 34/115 (29%), Positives = 53/115 (46%) Frame = -2 Query: 7909 QNHKVKKGETVASISRQYGVSSESIAELNNLSGRKQIRPGQVLKITGKASSAKSEARIXX 7730 +++ VK+G+T++ I+ +G + + +A N+LS I GQV+ TG S A + A Sbjct: 330 KSYVVKQGDTLSGIASNWGTNWQELARQNSLSNPNMIYAGQVISFTGGQSGATARA---- 385 Query: 7729 XXXXXXXXXSHKYHKVKKGETLSSIADKYALSVSELSXXXXXXXXXLIRPGQKLN 7565 + V+ G+ LSSIA +V L LI GQ LN Sbjct: 386 -------------YTVQSGDNLSSIAILLGTTVQSLVSMNGISNPNLIYAGQTLN 427 >ref|NP_996722.1|lysin Length = 429 Score = 47.0 bits (110), Expect = 2e-04 Identities = 33/115 (28%), Positives = 54/115 (46%) Frame = -2 Query: 7909 QNHKVKKGETVASISRQYGVSSESIAELNNLSGRKQIRPGQVLKITGKASSAKSEARIXX 7730 +++ VK+G+T++ I+ G + + +A N+LS I GQV+ +TG S A + Sbjct: 331 KSYIVKQGDTLSGIASNLGTNWQELARQNSLSNPNMIYSGQVISLTGGQSGATA------ 384 Query: 7729 XXXXXXXXXSHKYHKVKKGETLSSIADKYALSVSELSXXXXXXXXXLIRPGQKLN 7565 + + V+ G+ LSSIA + +V L LI GQ LN Sbjct: 385 -----------RTYTVQSGDNLSSIARRLGTTVQSLVSMNGISNPNLIYAGQTLN 428 >ref|NP_944261.1|putative TnpA transposase Length = 482 Score = 45.8 bits (107), Expect = 4e-04 Identities = 74/370 (20%), Positives = 129/370 (34%), Gaps = 13/370 (3%) Frame = -2 Query: 18544 CPQCGREG-VKAYDTSEATWRHLNFFQHEAYLTVRVPRISCPECGILKLQSFPWSRRESG 18368 C +CG G V + +R + R C +CG +Q + Sbjct: 35 CQKCGVIGRVYKHGPKMIIFRDSPIRGRPVSIEANAQRFRCRDCGGTFIQPLGGIHPATR 94 Query: 18367 FTLLFEAMIMIMAKSMPVKAIAAIVGEHDTRIWRIINHYVEKAREQEDHSAVTMVGVDET 18188 T I IA VG D + + Y+++ + +G+DET Sbjct: 95 MTARCVQYIEEQCLRDTFTRIAEHVGCDDKTVRTLAGDYIDRLNAEYTPWLPEWLGIDET 154 Query: 18187 SSKRGHNYVSLFVDLAVSKVLFATEGKDAATVKRFSEDLAAHKGDPALITEFCSDMSPAF 18008 + D+ + +D V + G L DM + Sbjct: 155 QIDG--KLRCIITDVVNRVPIDMLPDRDKPLVTAWLHQFKERGGVKGLAI----DMWKPY 208 Query: 18007 IKGVADNFTNAQLTFDKFHIMQVINNAVDEVRRQEQKERPELQRSRYIWLKNQNNLKASQ 17828 F + DKFH++++ N A+D++R K++ + W++ + L+ + Sbjct: 209 KDAAQSVFPGLPVVVDKFHLVRMANRAMDDIRITLAKDQEKAVGRD--WMRRKALLRM-R 265 Query: 17827 RKRLDELSLPRLNLK--------TTRAYRMRLTFQEFFEQP-QVLVEAFLKKWYFWATHS 17675 K LDE R NL+ AY ++ F + ++ P + E L W Sbjct: 266 YKNLDEQG--RFNLQMWLDNEPHVAIAYGLKEAFYDIYDAPSRAEAEERLDAWRKSVPAD 323 Query: 17674 QLQPMKE--AAYTIKRHW-SGILRWFTSRINNGVLEGINSLIQAAKARARGYRTTKNLIN 17504 + K T R+W +L +F I+NG E +N + + RGY Sbjct: 324 MRKGKKSFMPLLTSTRNWREEMLAYFDHPISNGYTEALNGVAKVINRAGRGYSFEVLRAR 383 Query: 17503 MIYLISGKLN 17474 ++Y GKL+ Sbjct: 384 LLY---GKLH 390 >ref|NP_690649.1|morphogenesis protein Length = 263 Score = 45.8 bits (107), Expect = 4e-04 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 1/102 (0%) Frame = -2 Query: 7924 RKEKIQNHKVKKGETVASISRQYGVSSESIAELN-NLSGRKQIRPGQVLKITGKASSAKS 7748 + K H VKKG+T++ I+++ S++++ ELN + +I GQ + + G S KS Sbjct: 158 KTSKTNTHVVKKGDTLSEIAKKIKTSTKTLLELNPTIKNPNKIYVGQRINVGG--SPVKS 215 Query: 7747 EARIXXXXXXXXXXXSHKYHKVKKGETLSSIADKYALSVSEL 7622 + +K+K+GETL+ IA K +VS+L Sbjct: 216 TLK----------------YKIKRGETLTGIAKKNKTTVSQL 241 >ref|YP_006507.1|Sit Length = 1140 Score = 45.1 bits (105), Expect = 6e-04 Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 15/124 (12%) Frame = -2 Query: 9022 PLFEENLERYNVPLEMKY-LAIVESALNPTAVS----------SAGARGLWQFMYGTGKM 8876 P F E +Y +P Y +A ES NP A S S GA G++QF + Sbjct: 747 PYFAELENKYGLPEGTLYAIAATESGGNPNAKSTLTRSPNGKLSGGALGMFQFTSVAREE 806 Query: 8875 YGLETSSFIEDRYDPYKATAAA----SKHLRDLYNIYGDWFLALAAYNSGPGNVNKAIRR 8708 GL ED ++P K+ AA SK+L+ GD A+ AYN+G G +NK + Sbjct: 807 TGLSR----EDSFNPEKSAEAAALLMSKYLKQAN---GDLNEAITAYNAGFGTINKWKKG 859 Query: 8707 AGGI 8696 G + Sbjct: 860 TGDL 863 >ref|NP_040700.1|hypothetical protein Length = 265 Score = 44.7 bits (104), Expect = 8e-04 Identities = 28/78 (35%), Positives = 36/78 (46%) Frame = -2 Query: 8956 ESALNPTAVSSAGARGLWQFMYGTGKMYGLETSSFIEDRYDPYKATAAASKHLRDLYNIY 8777 ES+ NP S GA GL Q M T K G + + YDP + + LR+ + Y Sbjct: 32 ESSGNPRTTSGVGAMGLMQLMPATAKSLG------VTNAYDPTQNIYGGAALLRENLDRY 85 Query: 8776 GDWFLALAAYNSGPGNVN 8723 GD AL AY+ G N Sbjct: 86 GDVNTALLAYHGGTNQAN 103 >ref|NP_690779.1|ORF46 Length = 300 Score = 43.5 bits (101), Expect = 0.002 Identities = 21/51 (41%), Positives = 32/51 (62%) Frame = -2 Query: 7903 HKVKKGETVASISRQYGVSSESIAELNNLSGRKQIRPGQVLKITGKASSAK 7751 + VKKG+T++ I+ + GVS + N + +I GQVLK+TG A S+K Sbjct: 170 YTVKKGDTLSEIAVKTGVSMAKLQAYNGIKNANKITVGQVLKLTGAAGSSK 220 >ref|NP_040733.1|morphogenesis protein B Length = 258 Score = 41.2 bits (95), Expect = 0.009 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Frame = -2 Query: 7903 HKVKKGETVASISRQYGVSSESIAELN-NLSGRKQIRPGQVLKITGKASSAKSEARIXXX 7727 +KVK G+ + I++++ + ++ +LN ++ IR GQ + +TG Sbjct: 163 YKVKSGDNLTKIAKKHNTTVATLLKLNPSIKDPNMIRVGQTINVTGSGG----------- 211 Query: 7726 XXXXXXXXSHKYHKVKKGETLSSIADKYALSVSEL 7622 K HKVK G+TLS IA +VS L Sbjct: 212 ----------KTHKVKSGDTLSKIAVDNKTTVSRL 236 >ref|NP_943903.1|gp47 recombination endonuclease subunit Length = 342 Score = 36.2 bits (82), Expect = 0.29 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 9/128 (7%) Frame = -2 Query: 19816 GHGSTFSKK--VWFKNRPYCMSYRGLDCSETLSATRFWRYGDLGTNKIEEAVALFSSNQQ 19643 GH T S+K V + PY ++ DC+E FW + D T ++E F +N Sbjct: 185 GHYHTSSRKGNVLYTGTPYTLTMG--DCNEIRG---FWVF-DTDTKELE-----FIANPD 233 Query: 19642 --PLRFFFR*EWSAKVSDSDVGKAVDVI-----KTAHATV*KNANFQDCCWQAEKRNFFN 19484 LR ++ ++ KV D GK V++I A + A F++ C++ ++ +N Sbjct: 234 IWHLRIDYKKDFDPKVIDKCKGKIVELIIYEFDDKLDAVM---AQFENVCYEFRQKQVYN 290 Query: 19483 FSVGVHDV 19460 FS V D+ Sbjct: 291 FSSDVEDI 298 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 243,482,677 Number of Sequences: 14420 Number of extensions: 5212588 Number of successful extensions: 14621 Number of sequences better than 0.5: 19 Number of HSP's better than 0.5 without gapping: 7327 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 14605 length of database: 3,019,461 effective HSP length: 116 effective length of database: 1,346,741 effective search space used: 20781560371 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig62 (37,874 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_899299.1|conserved hypothetical protein 98 7e-20 ref|NP_046572.1|ABC transporter 65 4e-10 ref|NP_945016.1|unknown 61 7e-09 ref|NP_945015.1|unknown 61 7e-09 ref|NP_046944.1|gp48 53 2e-06 ref|YP_006628.1|Gp48 49 3e-05 ref|NP_944261.1|putative TnpA transposase 46 3e-04 ref|NP_038305.1|ORF5 45 4e-04 ref|NP_839903.1|putative DnaC protein 40 0.013 ref|NP_076710.1|DnaC 40 0.017 ref|NP_061611.1|orf 21 39 0.029 ref|NP_695040.1|putative replication protein DnaC 39 0.029 ref|NP_862860.1|gp21 39 0.038 ref|NP_075485.1|hypothetical protein 39 0.038 ref|NP_803371.1|dnaC 39 0.038 ref|NP_690787.1|immunity repressor 39 0.038 ref|NP_958645.1|77ORF013 38 0.064 ref|NP_612853.1|putative CI-like transcriptional repressor 37 0.14 ref|NP_852481.1|Transcriptional regulator, MerR family 35 0.41 >ref|NP_899299.1|conserved hypothetical protein Length = 242 Score = 97.8 bits (242), Expect = 7e-20 Identities = 76/250 (30%), Positives = 123/250 (49%), Gaps = 8/250 (3%) Frame = +1 Query: 30409 SDIHNEFSREESSENWQVPKLSEDNESVLILAGDIGLLSRKQTWFGFLSQCSKQFRDVFV 30588 SDIHN++ E + E +++ D ++VL++AGDI R L + ++R V Sbjct: 10 SDIHNDYHDENALE-----RITGDKDAVLVVAGDINSKGRTVR---DLEAVADRWRAVIA 61 Query: 30589 IEGNHEWYHGNI-EKHSWQNAIAEHGFHNVHTGQLILEE----EKIAIIGTTLW---TDF 30744 + GNH+W+ I E+H ++ ++ NVH ++LE+ + + GTTLW D+ Sbjct: 62 VPGNHDWWGLAIHERHKFETSV-----DNVH---VLLEDTVQIDDVTFCGTTLWHEVNDW 113 Query: 30745 FGGNPIAMFDVSQGLNDYRLIKVGADYHRLRPEYLLALHHKQKKRLFEDVDHYTGLGYNV 30924 F G + +ND R I+ G + L E + ALH Q + E G Sbjct: 114 FEGQRW-----KENMNDRRKIR-GPQWRPLYGEDVHALHC-QSVKFIEKCREIEG---KK 163 Query: 30925 IVVTHHHPSLQGIAPCYWNDLLNAAYVSNLEKEVLSHKINYWICGHCHTAMEYSIGETRV 31104 +++THH PSL+ I+ Y N+ Y ++LE L N+ I GH H +Y + + V Sbjct: 164 VLITHHAPSLKSISSYYAYSSTNSFYCTDLEH--LLEGFNFAIHGHVHQEFDYHVNDCNV 221 Query: 31105 ICNPKGYPHE 31134 +CNP+ Y E Sbjct: 222 LCNPRAYGSE 231 >ref|NP_046572.1|ABC transporter Length = 705 Score = 65.5 bits (158), Expect = 4e-10 Identities = 52/178 (29%), Positives = 89/178 (50%) Frame = -3 Query: 7431 VRDISLEVEEGSCVALVGANGAGKSTLAKALCGQLKPRGGNVFFNGQKITGLPASEIAKR 7252 V DI+L ++ V ++G +G GKST AK+L K +++ NG I I KR Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 7251 GLCLCPEGRHIFAPLTVEENLLLGAYTHLPSIGPFRRKASDDLQRIFSIFPRLGERLSQQ 7072 + E +F T++ENL +G I S + I ++ + +LS+ Sbjct: 559 -IVYIDENPFLFKG-TIKENLCMGEIFDQNEI-ENACIMSQCHEFICNLDKQYSYKLSEN 615 Query: 7071 AGSLSGGEQQMLAIARSLMGKPRFMILDEPSMGLAPILVKEVFQAIASLHASGITILL 6898 +LS G++Q LA+AR+++ +P+ +ILDE + P K +++ +LH I+L Sbjct: 616 GSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYE---TLHRMDCLIIL 670 Score = 54.7 bits (130), Expect = 7e-07 Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 12/212 (5%) Frame = -2 Query: 26116 LDSIDLQFKRNDYTAIMGPSGSGKSTMMNIIGCL-DIPTSGIYELNGQNVAEMDDNELAR 25940 ++ I+L R D I+G SG+GKST + L +P IY LNG ++ D + + Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIY-LNGLDINRYDHLSIRK 557 Query: 25939 --IRNREIGFVFQTFNLLPRLNCLRNVELPLIYAGITPEEREQRAT--EALHRV--GLGN 25778 + E F+F+ ++ L I + + A H L Sbjct: 558 RIVYIDENPFLFKG-----------TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDK 606 Query: 25777 RITHKPSE----LSGGQIQRVAIARALINNPSIILADEPTGNLDTATSMEIMEIFGNLSD 25610 + ++K SE LS GQ QR+A+ARA+++ P +++ DE N+D + I E L Sbjct: 607 QYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYE---TLHR 663 Query: 25609 AGNTIILITHEE-DIARYTHRVIRLRDGKIES 25517 IILITH + +Y +++ + IES Sbjct: 664 MDCLIILITHNDPSNFKYNKKLVFRNNRIIES 695 >ref|NP_945016.1|unknown Length = 293 Score = 61.2 bits (147), Expect = 7e-09 Identities = 67/255 (26%), Positives = 105/255 (41%), Gaps = 16/255 (6%) Frame = -3 Query: 18891 FSDGEISVNYFESI-----RGS---DLFIIQSTNPPADNLMELLIM---IDXXXXXXXXR 18745 F GEI N+ E R + D II D L L + +D Sbjct: 26 FPSGEIGGNFSEDFVKFTERNAGKIDNVIITVQGYDKDTLFALALAKDAVDSLVPQKSAM 85 Query: 18744 ITAVIPYYGYARQDRKDKPRVAITAKLVANLLTTAGANRILTMDLHAPQIQGFFDIPFDH 18565 T V + AR DR A K+ ANL+ G + + +D H+ + F Sbjct: 86 KTVVFGFLPNARYDRHMFKGDAAALKVFANLVNAMGFDAVCALDPHSNVAENLFKC---- 141 Query: 18564 LYSSVMLINDIRQRDFRENLV--VASPDVGGVKLARKFAEELGTDLVIVDK-RRPKANVA 18394 M D+ + L+ + +PD G K + A+E+ + + K R K Sbjct: 142 --FQSMKQKDVAVHYANDPLIDYLVAPDAGASKKIAETAKEVDKPYITMSKVRNLKTGEI 199 Query: 18393 EVMNIIGDV--SGKNVLLVDDMIDTAGTLVNAAKAIRDAGGLRVYAAATHPILSGPAIER 18220 M I+ DV + K V+++DD+ D T V AAK +R+AG RV TH I S +E Sbjct: 200 TGMRILDDVDLTDKTVMILDDICDGGRTFVEAAKHLREAGAKRVELYVTHGIFS-KDVEN 258 Query: 18219 INASVIEKLIVSDSV 18175 + + I+ + ++S+ Sbjct: 259 LLDNGIDHIYTTNSL 273 >ref|NP_945015.1|unknown Length = 298 Score = 61.2 bits (147), Expect = 7e-09 Identities = 67/255 (26%), Positives = 105/255 (41%), Gaps = 16/255 (6%) Frame = -3 Query: 18891 FSDGEISVNYFESI-----RGS---DLFIIQSTNPPADNLMELLIM---IDXXXXXXXXR 18745 F GEI N+ E R + D II D L L + +D Sbjct: 31 FPSGEIGGNFSEDFVKFTERNAGKIDNVIITVQGYDKDTLFALALAKDAVDSLVPQKSAM 90 Query: 18744 ITAVIPYYGYARQDRKDKPRVAITAKLVANLLTTAGANRILTMDLHAPQIQGFFDIPFDH 18565 T V + AR DR A K+ ANL+ G + + +D H+ + F Sbjct: 91 KTVVFGFLPNARYDRHMFKGDAAALKVFANLVNAMGFDAVCALDPHSNVAENLFKC---- 146 Query: 18564 LYSSVMLINDIRQRDFRENLV--VASPDVGGVKLARKFAEELGTDLVIVDK-RRPKANVA 18394 M D+ + L+ + +PD G K + A+E+ + + K R K Sbjct: 147 --FQSMKQKDVAVHYANDPLIDYLVAPDAGASKKIAETAKEVDKPYITMSKVRNLKTGEI 204 Query: 18393 EVMNIIGDV--SGKNVLLVDDMIDTAGTLVNAAKAIRDAGGLRVYAAATHPILSGPAIER 18220 M I+ DV + K V+++DD+ D T V AAK +R+AG RV TH I S +E Sbjct: 205 TGMRILDDVDLTDKTVMILDDICDGGRTFVEAAKHLREAGAKRVELYVTHGIFS-KDVEN 263 Query: 18219 INASVIEKLIVSDSV 18175 + + I+ + ++S+ Sbjct: 264 LLDNGIDHIYTTNSL 278 >ref|NP_046944.1|gp48 Length = 95 Score = 53.1 bits (126), Expect = 2e-06 Identities = 25/81 (30%), Positives = 50/81 (61%) Frame = -1 Query: 31925 IKKRKDESPDFAKTFEQGYEQFRIGELLRQARKRAGLTQEDLAEKLHTKKSAVSRIENHS 31746 +K+ +P+ + +E ++ + E+L + R++AGLT+ LAE++ + SA+SR+E++ Sbjct: 11 VKEELLNTPEAIRGYEDADKELAMVEMLYEMREKAGLTKSALAERMGLQPSAISRLESNP 70 Query: 31745 EDIRLSTLSHYAEALGKKLTV 31683 + TLS YA+A G + + Sbjct: 71 LGASMKTLSRYAKACGASIDI 91 >ref|YP_006628.1|Gp48 Length = 95 Score = 49.3 bits (116), Expect = 3e-05 Identities = 22/81 (27%), Positives = 49/81 (60%) Frame = -1 Query: 31925 IKKRKDESPDFAKTFEQGYEQFRIGELLRQARKRAGLTQEDLAEKLHTKKSAVSRIENHS 31746 +K+ +P+ + +++ ++ + E+L + R++AGL++ LAE++ SA+SR+E + Sbjct: 11 VKESLLNTPEAIRGYQEADKELALVEMLYEMREKAGLSKSALAERMGITPSAISRLEGNP 70 Query: 31745 EDIRLSTLSHYAEALGKKLTV 31683 + TL+ YA+A G + + Sbjct: 71 LGASMKTLNKYAQACGASINI 91 >ref|NP_944261.1|putative TnpA transposase Length = 482 Score = 45.8 bits (107), Expect = 3e-04 Identities = 74/370 (20%), Positives = 129/370 (34%), Gaps = 13/370 (3%) Frame = -2 Query: 30010 CPQCGREG-VKAYDTSEATWRHLNFFQHEAYLTVRVPRISCPECGILKLQSFPWSRRESG 29834 C +CG G V + +R + R C +CG +Q + Sbjct: 35 CQKCGVIGRVYKHGPKMIIFRDSPIRGRPVSIEANAQRFRCRDCGGTFIQPLGGIHPATR 94 Query: 29833 FTLLFEAMIMIMAKSMPVKAIAAIVGEHDTRIWRIINHYVEKAREQEDHSAVTMVGVDET 29654 T I IA VG D + + Y+++ + +G+DET Sbjct: 95 MTARCVQYIEEQCLRDTFTRIAEHVGCDDKTVRTLAGDYIDRLNAEYTPWLPEWLGIDET 154 Query: 29653 SSKRGHNYVSLFVDLAVSKVLFATEGKDAATVKRFSEDLAAHKGDPALITEFCSDMSPAF 29474 + D+ + +D V + G L DM + Sbjct: 155 QIDG--KLRCIITDVVNRVPIDMLPDRDKPLVTAWLHQFKERGGVKGLAI----DMWKPY 208 Query: 29473 IKGVADNFTNAQLTFDKFHIMQVINNAVDEVRRQEQKERPELQRSRYIWLKNQNNLKASQ 29294 F + DKFH++++ N A+D++R K++ + W++ + L+ + Sbjct: 209 KDAAQSVFPGLPVVVDKFHLVRMANRAMDDIRITLAKDQEKAVGRD--WMRRKALLRM-R 265 Query: 29293 RKRLDELSLPRLNLK--------TTRAYRMRLTFQEFFEQP-QVLVEAFLKKWYFWATHS 29141 K LDE R NL+ AY ++ F + ++ P + E L W Sbjct: 266 YKNLDEQG--RFNLQMWLDNEPHVAIAYGLKEAFYDIYDAPSRAEAEERLDAWRKSVPAD 323 Query: 29140 QLQPMKE--AAYTIKRHW-SGILRWFTSRINNGVLEGINSLIQAAKARARGYRTTKNLIN 28970 + K T R+W +L +F I+NG E +N + + RGY Sbjct: 324 MRKGKKSFMPLLTSTRNWREEMLAYFDHPISNGYTEALNGVAKVINRAGRGYSFEVLRAR 383 Query: 28969 MIYLISGKLN 28940 ++Y GKL+ Sbjct: 384 LLY---GKLH 390 >ref|NP_038305.1|ORF5 Length = 260 Score = 45.4 bits (106), Expect = 4e-04 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Frame = -3 Query: 37734 NFNLILIGPSGTGKSYLAGGLCHEALK-LGYH----ALFRTMDDLIQTIRFKEITAAAAR 37570 ++N++LIG +G GKS+LA + ALK L H +F + DL+ I KE A Sbjct: 119 DYNIVLIGNTGVGKSHLA----YSALKALSDHTKKMGVFINVVDLLAKI--KEDFNLEAE 172 Query: 37569 EYKRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDE 37390 +R+ A LV+DD+ EK L + L+++T IITTN SP++ G Sbjct: 173 YIRRISEAEWLVLDDL---GTEKVTEWSSGILYSILNKRTKTIITTNLSPQDILGTYGKR 229 Query: 37389 V 37387 V Sbjct: 230 V 230 >ref|NP_839903.1|putative DnaC protein Length = 294 Score = 40.4 bits (93), Expect = 0.013 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%) Frame = -3 Query: 37731 FNLILIGPSGTGKSYLAGGLCHEA---LKLG-YHALFRTMDDLIQTIR----FKEITAAA 37576 FN + +G +G GKS+LA + E LK + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 37575 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 37405 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 37404 MLGDEVLA 37381 D++++ Sbjct: 264 SYDDKIVS 271 >ref|NP_076710.1|DnaC Length = 294 Score = 40.0 bits (92), Expect = 0.017 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 11/128 (8%) Frame = -3 Query: 37731 FNLILIGPSGTGKSYLAGGLCHEALKL----GYHALFRTMDDLIQTIR----FKEITAAA 37576 FN + +G +G GKS+LA + E + + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDDKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 37575 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 37405 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 37404 MLGDEVLA 37381 D++++ Sbjct: 264 SYDDKIVS 271 >ref|NP_061611.1|orf 21 Length = 257 Score = 39.3 bits (90), Expect = 0.029 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 37728 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 37555 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 118 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIQMLMDRIKAAYNKNAVETTDELVRL 177 Query: 37554 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 37378 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 178 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 231 Query: 37377 ALLDRLLYKCEVIKLTGKSYR 37315 + R+ + +++ G +R Sbjct: 232 RINSRMKHNARKVRVIGDDFR 252 >ref|NP_695040.1|putative replication protein DnaC Length = 296 Score = 39.3 bits (90), Expect = 0.029 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 5/110 (4%) Frame = -3 Query: 37728 NLILIGPSGTGKSYLAGGLCHEALK-LGYHALFRTMDDLIQTIR--FKEITAAAAREY-- 37564 N ++ GP+GTGKS+LA + + L+ +F + +++ I+ F + + EY Sbjct: 153 NTVVSGPAGTGKSHLAMSILKDCLQHTDLTVIFASWSEVLHLIKDSFDNKDSFYSTEYFM 212 Query: 37563 KRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKE 37414 + + LLVIDDI EK + L L +T IITTN E Sbjct: 213 EVFRNTDLLVIDDI---GSEKITEWSMSLLTEVLDARTKTIITTNLKSDE 259 >ref|NP_862860.1|gp21 Length = 256 Score = 38.9 bits (89), Expect = 0.038 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Frame = -3 Query: 37728 NLILIGPSGTGKSYLAGGLCHEALKLGYH-ALFRTMDDLIQTIRFKEITAAAARE---YK 37561 N++ G +GTGKS+LA + + A+F + DL+ I+ A ++E Sbjct: 120 NIVFQGEAGTGKSHLAFAMMKYLSETTKEIAIFINVTDLLMKIK-----ADFSQEEFLVN 174 Query: 37560 RLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLG 37396 ++ SA LV+DD+ M EK L N L+++ + +ITTN + +E + G Sbjct: 175 KIASAKFLVLDDLGM---EKDSEWSFSILYNILNKRANTVITTNLTAQEIQKRYG 226 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 38.9 bits (89), Expect = 0.038 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 37728 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 37555 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 37554 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 37378 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 37377 ALLDRLLYKCEVIKLTGKSYR 37315 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 >ref|NP_803371.1|dnaC Length = 259 Score = 38.9 bits (89), Expect = 0.038 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 37728 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 37555 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 37554 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 37378 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 37377 ALLDRLLYKCEVIKLTGKSYR 37315 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 >ref|NP_690787.1|immunity repressor Length = 144 Score = 38.9 bits (89), Expect = 0.038 Identities = 21/60 (35%), Positives = 35/60 (58%) Frame = -1 Query: 31856 IGELLRQARKRAGLTQEDLAEKLHTKKSAVSRIENHSEDIRLSTLSHYAEALGKKLTVVI 31677 +G+ ++ RK LTQ LAEK + +S ++ IE + LSTL A ALG +++ ++ Sbjct: 3 VGQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSAIV 62 >ref|NP_958645.1|77ORF013 Length = 259 Score = 38.1 bits (87), Expect = 0.064 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 37728 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 37555 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 37554 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 37378 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 37377 ALLDRLLYKCEVIKLTGKSYR 37315 + R+ + +++ G +R Sbjct: 234 RINSRMKKRARKVRVIGDDFR 254 >ref|NP_612853.1|putative CI-like transcriptional repressor Length = 240 Score = 37.0 bits (84), Expect = 0.14 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Frame = -1 Query: 31856 IGELLRQARKRAGLTQEDLAEKLHTKKSAVSRIE-NHSEDIRLSTLSHYAEAL 31701 IG+ +++ RK GLT +++A+KL+ ++ V R E N E++ +S L AE L Sbjct: 3 IGQRIKEKRKSMGLTVDEVAKKLNKNRATVYRYESNDIENLPISILEPLAEIL 55 >ref|NP_852481.1|Transcriptional regulator, MerR family Length = 114 Score = 35.4 bits (80), Expect = 0.41 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = -1 Query: 31853 GELLRQARKRAGLTQEDLAEKLHTKKSAVSRIENHSEDIRLSTLSHYA 31710 GE L++ R LTQ +L +K+ +S +S +ENH + L +L A Sbjct: 5 GENLKKFRNSHTLTQAELGDKIQLSRSQISNLENHFNEPDLDSLDRIA 52 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 201,043,312 Number of Sequences: 14420 Number of extensions: 4350052 Number of successful extensions: 12317 Number of sequences better than 0.5: 19 Number of HSP's better than 0.5 without gapping: 6610 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12302 length of database: 3,019,461 effective HSP length: 114 effective length of database: 1,375,581 effective search space used: 17208518310 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig63 (40,641 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_038305.1|ORF5 45 4e-04 ref|NP_839903.1|putative DnaC protein 40 0.014 ref|NP_076710.1|DnaC 40 0.018 ref|NP_061611.1|orf 21 39 0.031 ref|YP_164323.1|hypothetical protein 39 0.031 ref|NP_695040.1|putative replication protein DnaC 39 0.031 ref|NP_862860.1|gp21 39 0.040 ref|NP_075485.1|hypothetical protein 39 0.040 ref|NP_803371.1|dnaC 39 0.040 ref|NP_958645.1|77ORF013 38 0.068 >ref|NP_038305.1|ORF5 Length = 260 Score = 45.4 bits (106), Expect = 4e-04 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Frame = -3 Query: 40378 NFNLILIGPSGTGKSYLAGGLCHEALK-LGYH----ALFRTMDDLIQTIRFKEITAAAAR 40214 ++N++LIG +G GKS+LA + ALK L H +F + DL+ I KE A Sbjct: 119 DYNIVLIGNTGVGKSHLA----YSALKALSDHTKKMGVFINVVDLLAKI--KEDFNLEAE 172 Query: 40213 EYKRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDE 40034 +R+ A LV+DD+ EK L + L+++T IITTN SP++ G Sbjct: 173 YIRRISEAEWLVLDDL---GTEKVTEWSSGILYSILNKRTKTIITTNLSPQDILGTYGKR 229 Query: 40033 V 40031 V Sbjct: 230 V 230 >ref|NP_839903.1|putative DnaC protein Length = 294 Score = 40.4 bits (93), Expect = 0.014 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%) Frame = -3 Query: 40375 FNLILIGPSGTGKSYLAGGLCHEA---LKLG-YHALFRTMDDLIQTIR----FKEITAAA 40220 FN + +G +G GKS+LA + E LK + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 40219 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 40049 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 40048 MLGDEVLA 40025 D++++ Sbjct: 264 SYDDKIVS 271 >ref|NP_076710.1|DnaC Length = 294 Score = 40.0 bits (92), Expect = 0.018 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 11/128 (8%) Frame = -3 Query: 40375 FNLILIGPSGTGKSYLAGGLCHEALKL----GYHALFRTMDDLIQTIR----FKEITAAA 40220 FN + +G +G GKS+LA + E + + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDDKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 40219 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 40049 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 40048 MLGDEVLA 40025 D++++ Sbjct: 264 SYDDKIVS 271 >ref|NP_061611.1|orf 21 Length = 257 Score = 39.3 bits (90), Expect = 0.031 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 40372 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 40199 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 118 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIQMLMDRIKAAYNKNAVETTDELVRL 177 Query: 40198 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 40022 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 178 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 231 Query: 40021 ALLDRLLYKCEVIKLTGKSYR 39959 + R+ + +++ G +R Sbjct: 232 RINSRMKHNARKVRVIGDDFR 252 >ref|YP_164323.1|hypothetical protein Length = 2129 Score = 39.3 bits (90), Expect = 0.031 Identities = 48/181 (26%), Positives = 70/181 (38%), Gaps = 35/181 (19%) Frame = -3 Query: 4399 WRLAEGGLSWP--------VKGPRDLALLARKGVAELPGTAV------------------ 4298 WR A GG+ W + RDL L KGV +P AV Sbjct: 39 WREAVGGVRWRDEEEGRGLIGHARDLGLSVAKGVIGVPEAAVGLADIPTEGRVGKFLENQ 98 Query: 4297 --LLKFAAKTAREWLASHDLDTDAEFVRFLDAQLLVSVQTTTMHXXXXXXXXXLDLPVSG 4124 +L F + A+++L+ DL TD + D Q V T+H + S Sbjct: 99 DGMLGFRPREAKDFLS--DLHTDQYKQQQQDFQDADGVVDKTLHAVQNPSMVVNTVAESL 156 Query: 4123 ASRIAGG-IGRVSEQLAGSI------AESGGAVLYGQEVTRIDSVRREVIGVETRDGGAF 3965 S +AGG +GR LA ++ A GAV+ GQ+ +I + + + G A Sbjct: 157 PSMLAGGAVGRGVRALAPALAPVAAGAAGEGAVMAGQQAEQIRQETDDGLLTPAQSGAAV 216 Query: 3964 A 3962 A Sbjct: 217 A 217 >ref|NP_695040.1|putative replication protein DnaC Length = 296 Score = 39.3 bits (90), Expect = 0.031 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 5/110 (4%) Frame = -3 Query: 40372 NLILIGPSGTGKSYLAGGLCHEALK-LGYHALFRTMDDLIQTIR--FKEITAAAAREY-- 40208 N ++ GP+GTGKS+LA + + L+ +F + +++ I+ F + + EY Sbjct: 153 NTVVSGPAGTGKSHLAMSILKDCLQHTDLTVIFASWSEVLHLIKDSFDNKDSFYSTEYFM 212 Query: 40207 KRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKE 40058 + + LLVIDDI EK + L L +T IITTN E Sbjct: 213 EVFRNTDLLVIDDI---GSEKITEWSMSLLTEVLDARTKTIITTNLKSDE 259 >ref|NP_862860.1|gp21 Length = 256 Score = 38.9 bits (89), Expect = 0.040 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Frame = -3 Query: 40372 NLILIGPSGTGKSYLAGGLCHEALKLGYH-ALFRTMDDLIQTIRFKEITAAAARE---YK 40205 N++ G +GTGKS+LA + + A+F + DL+ I+ A ++E Sbjct: 120 NIVFQGEAGTGKSHLAFAMMKYLSETTKEIAIFINVTDLLMKIK-----ADFSQEEFLVN 174 Query: 40204 RLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLG 40040 ++ SA LV+DD+ M EK L N L+++ + +ITTN + +E + G Sbjct: 175 KIASAKFLVLDDLGM---EKDSEWSFSILYNILNKRANTVITTNLTAQEIQKRYG 226 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 38.9 bits (89), Expect = 0.040 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 40372 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 40199 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 40198 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 40022 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 40021 ALLDRLLYKCEVIKLTGKSYR 39959 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 >ref|NP_803371.1|dnaC Length = 259 Score = 38.9 bits (89), Expect = 0.040 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 40372 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 40199 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 40198 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 40022 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 40021 ALLDRLLYKCEVIKLTGKSYR 39959 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 >ref|NP_958645.1|77ORF013 Length = 259 Score = 38.1 bits (87), Expect = 0.068 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 40372 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 40199 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 40198 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 40022 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 40021 ALLDRLLYKCEVIKLTGKSYR 39959 + R+ + +++ G +R Sbjct: 234 RINSRMKKRARKVRVIGDDFR 254 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 214,367,794 Number of Sequences: 14420 Number of extensions: 4629300 Number of successful extensions: 13083 Number of sequences better than 0.5: 10 Number of HSP's better than 0.5 without gapping: 6879 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 13072 length of database: 3,019,461 effective HSP length: 115 effective length of database: 1,361,161 effective search space used: 18281753391 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig64 (37,073 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818251.1|gp200 54 1e-06 ref|NP_038305.1|ORF5 45 4e-04 ref|NP_818239.1|gp188 41 0.007 ref|NP_839903.1|putative DnaC protein 40 0.013 ref|NP_076710.1|DnaC 40 0.016 ref|NP_061611.1|orf 21 39 0.028 ref|NP_695040.1|putative replication protein DnaC 39 0.028 ref|NP_862860.1|gp21 39 0.037 ref|NP_075485.1|hypothetical protein 39 0.037 ref|NP_803371.1|dnaC 39 0.037 ref|NP_899507.1|moaA 38 0.063 ref|NP_958645.1|77ORF013 38 0.063 ref|YP_024516.1|putative DNA polymerase 35 0.41 >ref|NP_818251.1|gp200 Length = 113 Score = 53.5 bits (127), Expect = 1e-06 Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 1/100 (1%) Frame = +3 Query: 8856 IDVRKEDLELSTFRSGGKGGQNVNKVETAVRIKHIPSGIVVGCQQERSQFQNRERAM-KM 9032 + V D + T R G GGQN N +TAVRI H PSG V Q+ERSQ QN++ A +M Sbjct: 2 LSVTLADCVVETKRGHGNGGQNRNTRDTAVRIVHPPSGAVGESQEERSQLQNKKTAFRRM 61 Query: 9033 LMAQLYQRQREEEDAXXXXXXXXXXXXXWGSQIRSYVLDD 9152 + +Q + + A W +++ V +D Sbjct: 62 AESSKFQLWLKRQVANDDLIKAQVEREMWPVNLKTEVRED 101 >ref|NP_038305.1|ORF5 Length = 260 Score = 45.4 bits (106), Expect = 4e-04 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Frame = -3 Query: 36309 NFNLILIGPSGTGKSYLAGGLCHEALK-LGYH----ALFRTMDDLIQTIRFKEITAAAAR 36145 ++N++LIG +G GKS+LA + ALK L H +F + DL+ I KE A Sbjct: 119 DYNIVLIGNTGVGKSHLA----YSALKALSDHTKKMGVFINVVDLLAKI--KEDFNLEAE 172 Query: 36144 EYKRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDE 35965 +R+ A LV+DD+ EK L + L+++T IITTN SP++ G Sbjct: 173 YIRRISEAEWLVLDDL---GTEKVTEWSSGILYSILNKRTKTIITTNLSPQDILGTYGKR 229 Query: 35964 V 35962 V Sbjct: 230 V 230 >ref|NP_818239.1|gp188 Length = 318 Score = 41.2 bits (95), Expect = 0.007 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 1/103 (0%) Frame = -2 Query: 36814 PGFLADLRNLCDQNGIVLIFDEVMCGF-RVALGGAQSLYGVTPDLTTMGKIIGGGLPVGA 36638 P + D + ++G ++ DE GF R+ YG TPD G GGGL +G Sbjct: 122 PEVVLDEVDRATKSGRTVVADESATGFGRLGRIWGHQAYGFTPDAIIFGGPAGGGLTLGG 181 Query: 36637 FGGKRKIMERVAPLGDVYQAGTLSGNPLALTAGLETLKILMDE 36509 G ++++ D + G ++G PLA G TL + E Sbjct: 182 VIGPAELLD------DAF-VGPMAGAPLACATGAATLAAINPE 217 Score = 41.2 bits (95), Expect = 0.007 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 1/103 (0%) Frame = +2 Query: 27893 PGFLADLRNLCDQNGIVLIFDEVMCGF-RVALGGAQSLYGVTPDLTTMGKIIGGGLPVGA 28069 P + D + ++G ++ DE GF R+ YG TPD G GGGL +G Sbjct: 122 PEVVLDEVDRATKSGRTVVADESATGFGRLGRIWGHQAYGFTPDAIIFGGPAGGGLTLGG 181 Query: 28070 FGGKRKIMERVAPLGDVYQAGTLSGNPLALTAGLETLKILMDE 28198 G ++++ D + G ++G PLA G TL + E Sbjct: 182 VIGPAELLD------DAF-VGPMAGAPLACATGAATLAAINPE 217 >ref|NP_839903.1|putative DnaC protein Length = 294 Score = 40.4 bits (93), Expect = 0.013 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%) Frame = -3 Query: 36306 FNLILIGPSGTGKSYLAGGLCHEA---LKLG-YHALFRTMDDLIQTIR----FKEITAAA 36151 FN + +G +G GKS+LA + E LK + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 36150 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 35980 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 35979 MLGDEVLA 35956 D++++ Sbjct: 264 SYDDKIVS 271 >ref|NP_076710.1|DnaC Length = 294 Score = 40.0 bits (92), Expect = 0.016 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 11/128 (8%) Frame = -3 Query: 36306 FNLILIGPSGTGKSYLAGGLCHEALKL----GYHALFRTMDDLIQTIR----FKEITAAA 36151 FN + +G +G GKS+LA + E + + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDDKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 36150 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 35980 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 35979 MLGDEVLA 35956 D++++ Sbjct: 264 SYDDKIVS 271 >ref|NP_061611.1|orf 21 Length = 257 Score = 39.3 bits (90), Expect = 0.028 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 36303 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 36130 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 118 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIQMLMDRIKAAYNKNAVETTDELVRL 177 Query: 36129 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 35953 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 178 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 231 Query: 35952 ALLDRLLYKCEVIKLTGKSYR 35890 + R+ + +++ G +R Sbjct: 232 RINSRMKHNARKVRVIGDDFR 252 >ref|NP_695040.1|putative replication protein DnaC Length = 296 Score = 39.3 bits (90), Expect = 0.028 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 5/110 (4%) Frame = -3 Query: 36303 NLILIGPSGTGKSYLAGGLCHEALK-LGYHALFRTMDDLIQTIR--FKEITAAAAREY-- 36139 N ++ GP+GTGKS+LA + + L+ +F + +++ I+ F + + EY Sbjct: 153 NTVVSGPAGTGKSHLAMSILKDCLQHTDLTVIFASWSEVLHLIKDSFDNKDSFYSTEYFM 212 Query: 36138 KRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKE 35989 + + LLVIDDI EK + L L +T IITTN E Sbjct: 213 EVFRNTDLLVIDDI---GSEKITEWSMSLLTEVLDARTKTIITTNLKSDE 259 >ref|NP_862860.1|gp21 Length = 256 Score = 38.9 bits (89), Expect = 0.037 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Frame = -3 Query: 36303 NLILIGPSGTGKSYLAGGLCHEALKLGYH-ALFRTMDDLIQTIRFKEITAAAARE---YK 36136 N++ G +GTGKS+LA + + A+F + DL+ I+ A ++E Sbjct: 120 NIVFQGEAGTGKSHLAFAMMKYLSETTKEIAIFINVTDLLMKIK-----ADFSQEEFLVN 174 Query: 36135 RLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLG 35971 ++ SA LV+DD+ M EK L N L+++ + +ITTN + +E + G Sbjct: 175 KIASAKFLVLDDLGM---EKDSEWSFSILYNILNKRANTVITTNLTAQEIQKRYG 226 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 38.9 bits (89), Expect = 0.037 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 36303 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 36130 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 36129 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 35953 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 35952 ALLDRLLYKCEVIKLTGKSYR 35890 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 >ref|NP_803371.1|dnaC Length = 259 Score = 38.9 bits (89), Expect = 0.037 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 36303 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 36130 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 36129 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 35953 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 35952 ALLDRLLYKCEVIKLTGKSYR 35890 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 >ref|NP_899507.1|moaA Length = 374 Score = 38.1 bits (87), Expect = 0.063 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 1/150 (0%) Frame = -1 Query: 16475 YLHSRLLERAAKITDDIEVARKMNDLPDALKSMVKGGGSLTALPVIETQAGDVSAYIPTN 16296 Y +S+L + A++ ++ + + + NDL + ++ KG SLT L G+++ Sbjct: 110 YCYSKLSDLKARLFNEEDSSTRFNDLSTTINTISKGLSSLTIL------GGEITRSSNAP 163 Query: 16295 VISITDGQIFLESNLFNSGQRPAINVGISVSRVGGSAQIKAMKKV-AGTLRLDLAQFREL 16119 + G I N+F +G S+ GS IK++K+ A T+ + + RE Sbjct: 164 EVLRNVGDIKAAVNIFTNGS--------SLVLADGSDLIKSLKEANASTVFVSIDGLREY 215 Query: 16118 EAFSKFGSDLDKTTKAQLDRGARLVEILKQ 16029 + + + +D+ K +E++KQ Sbjct: 216 QDYIRLFADIKKVKSN--------IEVIKQ 237 >ref|NP_958645.1|77ORF013 Length = 259 Score = 38.1 bits (87), Expect = 0.063 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 36303 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 36130 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 36129 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 35953 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 35952 ALLDRLLYKCEVIKLTGKSYR 35890 + R+ + +++ G +R Sbjct: 234 RINSRMKKRARKVRVIGDDFR 254 >ref|YP_024516.1|putative DNA polymerase Length = 1072 Score = 35.4 bits (80), Expect = 0.41 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 9/92 (9%) Frame = -1 Query: 3545 EQSNTSIRYRDRLCLKLYRRIEIGVSPEIDMCRALTEKTGFSNL----PEYLGSLDYAQN 3378 E +T ++R K Y I++G+SPEI + + F N+ PEY+G DYA++ Sbjct: 401 ELDDTEKKFRVSELEKKY--IQLGLSPEIVNMNLVMDNDEFINIAEQSPEYMGLSDYAKS 458 Query: 3377 RASHYSLGILQSY-----VQNEGNAWNISLDY 3297 + ++ ++ Y V N+ + N + D+ Sbjct: 459 YTLNTAINLINEYRDVKDVVNDIDGGNFNYDW 490 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 192,703,480 Number of Sequences: 14420 Number of extensions: 4128124 Number of successful extensions: 12309 Number of sequences better than 0.5: 13 Number of HSP's better than 0.5 without gapping: 6475 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12301 length of database: 3,019,461 effective HSP length: 114 effective length of database: 1,375,581 effective search space used: 16841238183 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig65 (13,776 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_038305.1|ORF5 45 2e-04 ref|NP_839903.1|putative DnaC protein 40 0.005 ref|NP_076710.1|DnaC 40 0.006 ref|NP_061611.1|orf 21 39 0.011 ref|NP_695040.1|putative replication protein DnaC 39 0.011 ref|NP_862860.1|gp21 39 0.014 ref|NP_075485.1|hypothetical protein 39 0.014 ref|NP_803371.1|dnaC 39 0.014 ref|NP_958645.1|77ORF013 38 0.024 ref|NP_076651.1|DnaC 35 0.21 >ref|NP_038305.1|ORF5 Length = 260 Score = 45.4 bits (106), Expect = 2e-04 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Frame = -3 Query: 7807 NFNLILIGPSGTGKSYLAGGLCHEALK-LGYH----ALFRTMDDLIQTIRFKEITAAAAR 7643 ++N++LIG +G GKS+LA + ALK L H +F + DL+ I KE A Sbjct: 119 DYNIVLIGNTGVGKSHLA----YSALKALSDHTKKMGVFINVVDLLAKI--KEDFNLEAE 172 Query: 7642 EYKRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDE 7463 +R+ A LV+DD+ EK L + L+++T IITTN SP++ G Sbjct: 173 YIRRISEAEWLVLDDL---GTEKVTEWSSGILYSILNKRTKTIITTNLSPQDILGTYGKR 229 Query: 7462 V 7460 V Sbjct: 230 V 230 >ref|NP_839903.1|putative DnaC protein Length = 294 Score = 40.4 bits (93), Expect = 0.005 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%) Frame = -3 Query: 7804 FNLILIGPSGTGKSYLAGGLCHEA---LKLG-YHALFRTMDDLIQTIR----FKEITAAA 7649 FN + +G +G GKS+LA + E LK + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 7648 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 7478 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 7477 MLGDEVLA 7454 D++++ Sbjct: 264 SYDDKIVS 271 >ref|NP_076710.1|DnaC Length = 294 Score = 40.0 bits (92), Expect = 0.006 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 11/128 (8%) Frame = -3 Query: 7804 FNLILIGPSGTGKSYLAGGLCHEALKL----GYHALFRTMDDLIQTIR----FKEITAAA 7649 FN + +G +G GKS+LA + E + + LF + +LI+ I+ + + A Sbjct: 145 FNTVFVGGAGRGKSHLAMAILQEVNENLKDDKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 7648 AREYKRLLSAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 7478 R + + LLVIDD+ F + S G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 7477 MLGDEVLA 7454 D++++ Sbjct: 264 SYDDKIVS 271 >ref|NP_061611.1|orf 21 Length = 257 Score = 39.3 bits (90), Expect = 0.011 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 7801 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 7628 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 118 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIQMLMDRIKAAYNKNAVETTDELVRL 177 Query: 7627 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 7451 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 178 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 231 Query: 7450 ALLDRLLYKCEVIKLTGKSYR 7388 + R+ + +++ G +R Sbjct: 232 RINSRMKHNARKVRVIGDDFR 252 >ref|NP_695040.1|putative replication protein DnaC Length = 296 Score = 39.3 bits (90), Expect = 0.011 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 5/110 (4%) Frame = -3 Query: 7801 NLILIGPSGTGKSYLAGGLCHEALK-LGYHALFRTMDDLIQTIR--FKEITAAAAREY-- 7637 N ++ GP+GTGKS+LA + + L+ +F + +++ I+ F + + EY Sbjct: 153 NTVVSGPAGTGKSHLAMSILKDCLQHTDLTVIFASWSEVLHLIKDSFDNKDSFYSTEYFM 212 Query: 7636 KRLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKE 7487 + + LLVIDDI EK + L L +T IITTN E Sbjct: 213 EVFRNTDLLVIDDI---GSEKITEWSMSLLTEVLDARTKTIITTNLKSDE 259 >ref|NP_862860.1|gp21 Length = 256 Score = 38.9 bits (89), Expect = 0.014 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Frame = -3 Query: 7801 NLILIGPSGTGKSYLAGGLCHEALKLGYH-ALFRTMDDLIQTIRFKEITAAAARE---YK 7634 N++ G +GTGKS+LA + + A+F + DL+ I+ A ++E Sbjct: 120 NIVFQGEAGTGKSHLAFAMMKYLSETTKEIAIFINVTDLLMKIK-----ADFSQEEFLVN 174 Query: 7633 RLLSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLG 7469 ++ SA LV+DD+ M EK L N L+++ + +ITTN + +E + G Sbjct: 175 KIASAKFLVLDDLGM---EKDSEWSFSILYNILNKRANTVITTNLTAQEIQKRYG 226 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 38.9 bits (89), Expect = 0.014 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 7801 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 7628 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 7627 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 7451 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 7450 ALLDRLLYKCEVIKLTGKSYR 7388 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 >ref|NP_803371.1|dnaC Length = 259 Score = 38.9 bits (89), Expect = 0.014 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 7801 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 7628 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 7627 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 7451 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 7450 ALLDRLLYKCEVIKLTGKSYR 7388 + R+ + +++ G +R Sbjct: 234 RINSRMKHNARKVRVIGDDFR 254 >ref|NP_958645.1|77ORF013 Length = 259 Score = 38.1 bits (87), Expect = 0.024 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Frame = -3 Query: 7801 NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIR--FKEITAAAAREYKRL 7628 +LIL G GTGKS+LA + G+ F + L+ I+ + + E RL Sbjct: 120 SLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRL 179 Query: 7627 LS-AHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLAT 7451 LS LLV+DD+ + E ++ LF +V+ + + I TTN S KE L + Sbjct: 180 LSDIDLLVLDDMGVENTEHTLN-KLFSIVDNRVGKNN-IFTTNFSDKE----LNQNMNWQ 233 Query: 7450 ALLDRLLYKCEVIKLTGKSYR 7388 + R+ + +++ G +R Sbjct: 234 RINSRMKKRARKVRVIGDDFR 254 >ref|NP_076651.1|DnaC Length = 294 Score = 35.0 bits (79), Expect = 0.21 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 11/146 (7%) Frame = -3 Query: 7804 FNLILIGPSGTGKSYLAGGLCHEA---LKLG-YHALFRTMDDLIQTIRFKEITAAAAREY 7637 FN + +G + GKS+LA + E LK + LF + +LI+ I+ + E Sbjct: 145 FNTVFVGGACRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNHSDTKAEE 204 Query: 7636 KRLL----SAHLLVIDDI---MMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAE 7478 +RL + LLVIDD+ F + + G+ + E + IIT+N + KE Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNNWVQGVIYNIYNAREGNT-IITSNLTGKEMRS 263 Query: 7477 MLGDEVLATALLDRLLYKCEVIKLTG 7400 D++++ + K VIK G Sbjct: 264 SYDDKIVSPIMEGS---KNSVIKFEG 286 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,863,132 Number of Sequences: 14420 Number of extensions: 1479140 Number of successful extensions: 4079 Number of sequences better than 0.5: 10 Number of HSP's better than 0.5 without gapping: 3165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4075 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 6554598783 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig66 (46,554 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 103 2e-21 ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase 48 7e-05 ref|NP_049793.1|Hoc head outer capsid protein 39 0.045 ref|NP_040595.1|tail component 37 0.22 ref|NP_795606.1|hypothetical protein 36 0.29 >ref|NP_046572.1|ABC transporter Length = 705 Score = 103 bits (256), Expect = 2e-21 Identities = 69/263 (26%), Positives = 128/263 (48%), Gaps = 4/263 (1%) Frame = -1 Query: 30108 QALAKFVRYSMQSLTLGAGAFLVIEGKLSAGSMIAANVLMSRALQPLDLVVATWKPFVQA 29929 + L ++ S + L G V+ +S G+++ N L + L LD +++ QA Sbjct: 392 EILKGLIQNSFTIIILWVGTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQA 451 Query: 29928 RVAFLR----IERLLEKFSDSGLRSEHDQEPLGEIRLNGLTARVAGRTKPVLNDLHALFP 29761 VA +R + +++ S+ L + + + LN A + ++ D++ + Sbjct: 452 HVASIRFFDVVNYPVQQDSNENLTELDFIQNIKTVNLN----IGADPMRYIVEDINLILD 507 Query: 29760 AGKITVILGPSGSGKSTLARCVLGVWPDKEGDVLLDGDPIESWERKELGPHVGYLPQDIE 29581 +I+G SG+GKST A+ + ++ + + L+G I ++ + + Y+ ++ Sbjct: 508 RKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPF 567 Query: 29580 LFDGSIAENIARFGELDSPKIIEAATRTGIHEMILRFPHGYDTRIGEDGGLLSAGQRQRL 29401 LF G+I EN+ D +I A + HE I Y ++ E+G LS GQ+QRL Sbjct: 568 LFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRL 627 Query: 29400 GLARAMYGNPKILVLDEPNANLD 29332 LARA+ P++L+LDE +N+D Sbjct: 628 ALARAILHQPQVLILDESLSNID 650 Score = 96.3 bits (238), Expect = 2e-19 Identities = 100/478 (20%), Positives = 205/478 (42%), Gaps = 7/478 (1%) Frame = -1 Query: 32472 SLIVNVLVLAPSAYMMEVYDRVVNSRSHTTLLMLTILVIGSYLLLEALEWVRRQVMHGAG 32293 SL V L +A S Y+ + D ++ +L+ +T++ I L+ ++VR ++ Sbjct: 175 SLFVVGLAVAGSFYIKFLVDLIIPRSLRESLITITLIFISMVLIRCIFDFVRSYLIIKLS 234 Query: 32292 LGLDAKLRDQVIGAMFTARLQSLSSGGT----QALRDLKTVCDFLASTAMLAIIDMPLAL 32125 +D ++ + + + + D + DF ++ + AIID+ L L Sbjct: 235 YKVDKEMSNVYFNKVTKLPINFFENREDGEVISRFNDGIYIKDFFSANFVTAIIDIILIL 294 Query: 32124 LVLVLIFMMSPMLGWFAVAGALMQFMIGVINERRIREPLLAANRGSRNTQAYADSVLRNA 31945 + V+++ + +L + L+ + ++ +++ + + + L+N Sbjct: 295 GLGVILYRTNNILFLTIILPILLLSCLAILFFDHLKKKNQKLMEDKAKSTSLLINFLKNM 354 Query: 31944 EVIESMGMLDHIHNRWMRRQQDFLVQQAKASDHAGTNAAXXXXXXXXXXXXXXXXGCWLT 31765 + S+ ++ L + +N G Sbjct: 355 TTVYSLNKTSFFLEKFHLTYDKQLNSTFSVAKAVISNEILKGLIQNSFTIIILWVGTRQV 414 Query: 31764 LKGELQGSGMIVSSILGGRVLSPLVQIIGNWRQVEGAFEAFTRLDLMLKQYPVPE---KR 31594 L + ++ + L +LS L +I+ ++ A A R + YPV + + Sbjct: 415 LNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHVASIRF-FDVVNYPVQQDSNEN 473 Query: 31593 MALPPPTGSLVVDNLIAGAPGSKSQILKGISFRLAPGGTLAIVGPSASGKTTLARLLVGI 31414 + ++ NL GA + I++ I+ L + I+G S +GK+T A+ L + Sbjct: 474 LTELDFIQNIKTVNLNIGADPMR-YIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKL 532 Query: 31413 WPAIQGKVRLDGNDIYQWDKEELGQYIGYLPQNVELFDGTIAENIARFGEPDEAKVEAAC 31234 + + L+G DI ++D + + I Y+ +N LF GTI EN+ D+ ++E AC Sbjct: 533 YKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENAC 592 Query: 31233 RMVGLERFIEQLPQGYDTRIGDDGSFLSGGERQRVALARSVYGMPKFIVLDEPNASLD 31060 M FI L + Y ++ ++GS LS G++QR+ALAR++ P+ ++LDE +++D Sbjct: 593 IMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNID 650 >ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase Length = 320 Score = 48.1 bits (113), Expect = 7e-05 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 1/161 (0%) Frame = -3 Query: 21850 VLVTGAAGFIGFHVCRRLLDRGDSVTGLDNMNDYYDVHLKESRLAQLEPEEAFSFVKMDL 21671 +L+TG GFIG + +RL D V + N D++ ++ +S A +V +DL Sbjct: 2 ILITGCTGFIGSQLLKRL--NNDKVVCVAN-KDHFSNNIVDS---------AAEYVFVDL 49 Query: 21670 ADRAGMEELFDASRFDRVINLAAQAGVRYSLINPYSYIDSNIQGFLNILEGCRHNGIEHL 21491 DR + +L + D VINLA++ VR S S++++ I + NI L Sbjct: 50 TDREKVRDLLRKVKPDLVINLASKTPVRLS-YEDTSFMNNAIIAY-NIA-----MAEAPL 102 Query: 21490 VYASSSSVYGANESMPFSVHDNVDH-PLSLYAASKKANELM 21371 ++AS++ VY + + V P S YA SK A+E++ Sbjct: 103 IHASTAEVYPYTPYPHYYKEEEVYRTPTSPYAVSKIASEML 143 >ref|NP_049793.1|Hoc head outer capsid protein Length = 376 Score = 38.9 bits (89), Expect = 0.045 Identities = 36/115 (31%), Positives = 47/115 (40%), Gaps = 1/115 (0%) Frame = -3 Query: 34201 TLTVTNTNDAPTGSVTVTGRAIEGETLTAENTLADPDGPGSISYQWQADGVDIIGAQGQ- 34025 T TV T PTG + ET T + G G+I+Y W D V GA+ Sbjct: 2 TFTVDITPKTPTGVID--------ETKQFTATPSGQTGGGTITYAWSVDNVPQDGAEATF 53 Query: 34024 SLVLGAQEKDKRISVVASYKDGHGTNESVSSNSILYGTTTSISTDGSLITTTIPV 33860 S VL K I VVA+ G E+ + TT+I+ TTT+ V Sbjct: 54 SYVLKGPAGQKTIKVVATNTLSEGGPETAEA-------TTTITVKNKTQTTTLAV 101 >ref|NP_040595.1|tail component Length = 853 Score = 36.6 bits (83), Expect = 0.22 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 11/149 (7%) Frame = +1 Query: 8098 DEHTKKKLHLLEAISECKHKILTFKEKQTLARNNKEYDALSKQIEYEEKEIAQGEIQLQD 8277 +++T ++ L +A+ + KIL +A K+Y+A K+ + +++ G+ Q +D Sbjct: 413 EKYTARQEELNKALKD--GKILQADYNTLMAAAKKDYEATLKKPKQSSVKVSAGDRQ-ED 469 Query: 8278 IAHA-------EQRTLETHQKGRQLINENRYD----EIAEDMIPDDVLKQQLEDLTRQVE 8424 AHA E RTLE H + I++ R D E ++ + ++QL + + Sbjct: 470 SAHAALLTLQAELRTLEKHAGANEKISQQRRDLWKAESQFAVLEEAAQRRQLSAQEKSLL 529 Query: 8425 LKKDELNGIVIETADDVETLKVKISDQRR 8511 KDE +E + L K++ Q R Sbjct: 530 AHKDE----TLEYKRQLAALGDKVTYQER 554 >ref|NP_795606.1|hypothetical protein Length = 196 Score = 36.2 bits (82), Expect = 0.29 Identities = 29/155 (18%), Positives = 67/155 (43%), Gaps = 1/155 (0%) Frame = +1 Query: 8083 RKKVADEHTKKKLHLLEAISECKHKILTFKEKQTLARNNKEYDALSKQIEYEEKEIAQG- 8259 +K+ E +K++ L ++EC+HK+ + + T+ + D ++ + + + Sbjct: 51 KKEKKSEVKRKEIELTNLVNECEHKLFLYNQNMTIVNDTTNPDTFFNNLDTAKYSLERAV 110 Query: 8260 EIQLQDIAHAEQRTLETHQKGRQLINENRYDEIAEDMIPDDVLKQQLEDLTRQVELKKDE 8439 EI D +A LE KG + + + + I ++ +K+ D ++ + K E Sbjct: 111 EISKYDFINASGDDLE---KGLERLTNEKLN------IEEEFVKRYYFDNIKKANVLKTE 161 Query: 8440 LNGIVIETADDVETLKVKISDQRRHIEKEAHRLID 8544 +++ K ++ + R E + +LID Sbjct: 162 KG-----KQNNLSKGKERLLEYRDKFEDDTIKLID 191 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 238,165,276 Number of Sequences: 14420 Number of extensions: 5076761 Number of successful extensions: 15476 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 7506 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 15470 length of database: 3,019,461 effective HSP length: 116 effective length of database: 1,346,741 effective search space used: 20741158141 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig67 (40,028 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958675.1|reverse transcriptase 184 6e-46 ref|NP_996568.1|reverse transcriptase 184 6e-46 ref|NP_996616.1|hypothetical protein predicted by GeneMark 184 6e-46 ref|NP_758929.1|ORF37 182 2e-45 ref|NP_046572.1|ABC transporter 64 1e-09 ref|NP_945089.1|gp58 48 8e-05 ref|NP_543076.1|putative DNA methylase 38 0.067 >ref|NP_958675.1|reverse transcriptase Length = 328 Score = 184 bits (467), Expect = 6e-46 Identities = 112/335 (33%), Positives = 174/335 (51%), Gaps = 3/335 (0%) Frame = +2 Query: 30107 KTEKNLFESVTAFENVLSAARNAAKGKRETRSVLLFYAQLEDNLWQIIAELKSKTWQPGS 30286 K +NL + +T +EN+L A R + GKR T L F NL + AELK+ ++ G Sbjct: 3 KRHRNLIDQITTWENLLDAYRKTSHGKRRTWGYLEFKEYDLANLLALQAELKAGNYERGP 62 Query: 30287 FKSFSIYKPKPRLISAAPFRDRVVHHALINVVGPLLEQTFIHDTYANRMGKGTHKAIRRY 30466 ++ F +Y+PKPRLISA F+DR+V HAL N+V P+ E + TYA R KGTH + Sbjct: 63 YREFLVYEPKPRLISALEFKDRLVQHALCNIVAPIFEAGLLPYTYACRPDKGTHAGVCHV 122 Query: 30467 QHFL--CRFDYALKCDIKKYFPSVDHEILKTSLRRRVACNDTLWLIDTIIDNSNSQDDHL 30640 Q L R + LK D K+FPS+D L + +++ C T L+ ++ + Sbjct: 123 QAELRRTRATHFLKSDFSKFFPSIDRAALYAMIDKKIHCAATRRLLRVVLPDEG------ 176 Query: 30641 HYFQGDDLFTPVERRKGLPIGNLTSQFFANYYLNFLDHFVKERLHCKGYVRYVDDFVLFS 30820 G+PIG+LTSQ FAN Y +D + + L + + RY+DD V+ Sbjct: 177 ---------------VGIPIGSLTSQLFANVYGGAVDRLLHDELKQRHWARYMDDIVVLG 221 Query: 30821 DSRAELWRWKEEIERYLEEFRLVLNAQRTELFPTTEGRCFLGQKVFQSYRLLPAENVRRA 31000 D EL + + E RL L ++ P + G FLG +++ +++LL +V+RA Sbjct: 222 DDPEELRAVFYRLRDFASE-RLGLKISHWQVAPVSRGINFLGYRIWPTHKLLRKSSVKRA 280 Query: 31001 KKRV-QASDVANPAAMKKMHSGWIGHARQANTGNL 31102 K++V ++++ + W GHA+ A+T NL Sbjct: 281 KRKVANFIKHGEDESLQRFLASWSGHAQWADTHNL 315 >ref|NP_996568.1|reverse transcriptase Length = 328 Score = 184 bits (467), Expect = 6e-46 Identities = 112/335 (33%), Positives = 174/335 (51%), Gaps = 3/335 (0%) Frame = +2 Query: 30107 KTEKNLFESVTAFENVLSAARNAAKGKRETRSVLLFYAQLEDNLWQIIAELKSKTWQPGS 30286 K +NL + +T +EN+L A R + GKR T L F NL + AELK+ ++ G Sbjct: 3 KRHRNLIDQITTWENLLDAYRKTSHGKRRTWGYLEFKEYDLANLLALQAELKAGNYERGP 62 Query: 30287 FKSFSIYKPKPRLISAAPFRDRVVHHALINVVGPLLEQTFIHDTYANRMGKGTHKAIRRY 30466 ++ F +Y+PKPRLISA F+DR+V HAL N+V P+ E + TYA R KGTH + Sbjct: 63 YREFLVYEPKPRLISALEFKDRLVQHALCNIVAPIFEAGLLPYTYACRPDKGTHAGVCHV 122 Query: 30467 QHFL--CRFDYALKCDIKKYFPSVDHEILKTSLRRRVACNDTLWLIDTIIDNSNSQDDHL 30640 Q L R + LK D K+FPS+D L + +++ C T L+ ++ + Sbjct: 123 QAELRRTRATHFLKSDFSKFFPSIDRAALYAMIDKKIHCAATRRLLRVVLPDEG------ 176 Query: 30641 HYFQGDDLFTPVERRKGLPIGNLTSQFFANYYLNFLDHFVKERLHCKGYVRYVDDFVLFS 30820 G+PIG+LTSQ FAN Y +D + + L + + RY+DD V+ Sbjct: 177 ---------------VGIPIGSLTSQLFANVYGGAVDRLLHDELKQRHWARYMDDIVVLG 221 Query: 30821 DSRAELWRWKEEIERYLEEFRLVLNAQRTELFPTTEGRCFLGQKVFQSYRLLPAENVRRA 31000 D EL + + E RL L ++ P + G FLG +++ +++LL +V+RA Sbjct: 222 DDPEELRAVFYRLRDFASE-RLGLKISHWQVAPVSRGINFLGYRIWPTHKLLRKSSVKRA 280 Query: 31001 KKRV-QASDVANPAAMKKMHSGWIGHARQANTGNL 31102 K++V ++++ + W GHA+ A+T NL Sbjct: 281 KRKVANFIKHGEDESLQRFLASWSGHAQWADTHNL 315 >ref|NP_996616.1|hypothetical protein predicted by GeneMark Length = 328 Score = 184 bits (467), Expect = 6e-46 Identities = 112/335 (33%), Positives = 174/335 (51%), Gaps = 3/335 (0%) Frame = +2 Query: 30107 KTEKNLFESVTAFENVLSAARNAAKGKRETRSVLLFYAQLEDNLWQIIAELKSKTWQPGS 30286 K +NL + +T +EN+L A R + GKR T L F NL + AELK+ ++ G Sbjct: 3 KRHRNLIDQITTWENLLDAYRKTSHGKRRTWGYLEFKEYDLANLLALQAELKAGNYERGP 62 Query: 30287 FKSFSIYKPKPRLISAAPFRDRVVHHALINVVGPLLEQTFIHDTYANRMGKGTHKAIRRY 30466 ++ F +Y+PKPRLISA F+DR+V HAL N+V P+ E + TYA R KGTH + Sbjct: 63 YREFLVYEPKPRLISALEFKDRLVQHALCNIVAPIFEAGLLPYTYACRPDKGTHAGVCHV 122 Query: 30467 QHFL--CRFDYALKCDIKKYFPSVDHEILKTSLRRRVACNDTLWLIDTIIDNSNSQDDHL 30640 Q L R + LK D K+FPS+D L + +++ C T L+ ++ + Sbjct: 123 QAELRRTRATHFLKSDFSKFFPSIDRAALYAMIDKKIHCAATRRLLRVVLPDEG------ 176 Query: 30641 HYFQGDDLFTPVERRKGLPIGNLTSQFFANYYLNFLDHFVKERLHCKGYVRYVDDFVLFS 30820 G+PIG+LTSQ FAN Y +D + + L + + RY+DD V+ Sbjct: 177 ---------------VGIPIGSLTSQLFANVYGGAVDRLLHDELKQRHWARYMDDIVVLG 221 Query: 30821 DSRAELWRWKEEIERYLEEFRLVLNAQRTELFPTTEGRCFLGQKVFQSYRLLPAENVRRA 31000 D EL + + E RL L ++ P + G FLG +++ +++LL +V+RA Sbjct: 222 DDPEELRAVFYRLRDFASE-RLGLKISHWQVAPVSRGINFLGYRIWPTHKLLRKSSVKRA 280 Query: 31001 KKRV-QASDVANPAAMKKMHSGWIGHARQANTGNL 31102 K++V ++++ + W GHA+ A+T NL Sbjct: 281 KRKVANFIKHGEDESLQRFLASWSGHAQWADTHNL 315 >ref|NP_758929.1|ORF37 Length = 303 Score = 182 bits (463), Expect = 2e-45 Identities = 109/316 (34%), Positives = 175/316 (55%), Gaps = 14/316 (4%) Frame = +2 Query: 30125 FESVTAFENVLSAARNAAKGKRETRSVLLFYAQLEDNLWQI----IAELKSKTWQPGSFK 30292 FE + FEN+LSAA + KGK + + L+F+ LE+N+ + +++ P + Sbjct: 8 FEKIFDFENLLSAAYSCRKGKTKANATLVFFNNLEENIIDTKRADVGRVQNVPLSPFYYS 67 Query: 30293 SFSIYKPKPRLISAAPFRDRVVHHALINVVGPLLEQTFIHDTYANRMG-KGTHKAIRRYQ 30469 S K RLISA F+DRVVH A+ NV+ PL ++T+I+D+YA R G + KA+ Q Sbjct: 68 S-----RKRRLISAPHFKDRVVHRAIYNVIEPLFDKTYIYDSYACRRGERAPTKALTGLQ 122 Query: 30470 HFLCRFD------YALKCDIKKYFPSVDHEILKTSLRRRVACNDTLWLIDTIIDNSNSQD 30631 +F+ + + YALK DI +YF S+DH++LK+ L ++ C TL L+ IIDNS + Sbjct: 123 YFIKKVESKHGKAYALKADISRYFSSIDHQVLKSILEAKIQCQRTLDLLFYIIDNSPCES 182 Query: 30632 DHLHYFQGDDLFTPVERRKGLPIGNLTSQFFANYYLNFLDHFVKERLHCKGYVRYVDDFV 30811 + G+P+GNLTSQ FAN YL+ LD + K L K Y+RY+DDF Sbjct: 183 MGV----------------GIPLGNLTSQIFANVYLHELDRYAKHALGAKHYIRYMDDFA 226 Query: 30812 LFSDSRAELWRWKEEIERYLEEFRLVLNAQRTELFP---TTEGRCFLGQKVFQSYRLLPA 30982 + +A L +W+++IE +L + + +T++FP G + S+RLL Sbjct: 227 IIHHDKAVLHQWRKDIEEFLHLYLRLKTNSKTQVFPYQRVMAGAWISRVSNYSSHRLLRN 286 Query: 30983 ENVRRAKKRVQASDVA 31030 + ++ +++ D++ Sbjct: 287 AALSELRQNLKSIDLS 302 >ref|NP_046572.1|ABC transporter Length = 705 Score = 63.9 bits (154), Expect = 1e-09 Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 10/204 (4%) Frame = -3 Query: 8295 LDLSLQPETLHTLFGRSGSGKTTTLRILAGLTQPDSGHIEVNGRVWLDSAAKINLPPQKR 8116 ++L L + + G SG+GK+T + L+ L + I +NG LD +L +KR Sbjct: 502 INLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNG---LDINRYDHLSIRKR 558 Query: 8115 KVGFVFQDYALFPTMTIKENLLFAQK-TKNEQKVNELLELTHLSV--LHNRYPTKLSG-- 7951 V ++ ++ LF TIKENL + +NE + ++ H + L +Y KLS Sbjct: 559 IV-YIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG 616 Query: 7950 -----GQQQRV