Prophage Finder Output

Genome file:  temp/burkholderiaxenolc.txt
Sequence Header:  >Contig480

Genome size:  1471779
Host's GC content:  61.73
Predicted Codon Position GC:  	1st:  64.86	 2nd:  43.37	 3rd:  72.14

 

Prophage Finder Output

Genome file:  temp/burkholderiaxenolc.txt
Sequence Header:  >Contig481

Genome size:  3363536
Host's GC content:  62.84
Predicted Codon Position GC:  	1st:  65.54	 2nd:  43.67	 3rd:  74.02

 

Prophage Finder Output

Genome file:  temp/burkholderiaxenolc.txt
Sequence Header:  >Contig482

Genome size:  4868361
Host's GC content:  62.78
Predicted Codon Position GC:  	1st:  65.51	 2nd:  43.65	 3rd:  73.92

 >PredictedProphage1 
 Length:   10358 
 Number of hits =   5 
 GC	Coding	First	Second	Third
 57.17 	 57.05 	 65.39 	 40.36 	 65.39 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 2739144	2739437	-1	ref|NP_061611.1|orf 21	48.1bits(113)	0.005
 2743586	2744830	-1	ref|NP_046798.1|Old 	62.4bits(150)	3e-07
 2746111	2746269	-1	ref|NP_064757.1|gp19 	48.1bits(113)	0.005
 2748750	2749160	-1	ref|NP_817710.1|gp32 	50.1bits(118)	0.001
 2749262	2749501	-1	ref|YP_024964.1|putative prophage repressor protein	50.1bits(118)	0.001
 
 >PredictedProphage2 
 Length:   35081 
 Number of hits =   26 
 GC	Coding	First	Second	Third
 61.79 	 61.81 	 62.39 	 48.81 	 74.23 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 3268537	3269055	-1	ref|NP_835609.1|hypothetical protein	45.1bits(105)	0.045
 3270322	3270786	-1	ref|YP_112524.1|glycosidase 	93.6bits(231)	1e-16
 3273671	3274405	-1	ref|YP_024725.1|gp52 	131bits(330)	4e-28
 3274394	3274624	-1	ref|NP_599053.1|unknown 	56.6bits(135)	1e-05
 3274709	3275737	-1	ref|YP_024939.1|gp19 	187bits(474)	7e-45
 3275827	3276393	-1	ref|NP_543105.1|hypothetical protein	110bits(274)	1e-21
 3276430	3277587	-1	ref|NP_543104.1|hypothetical protein	120bits(301)	8e-25
 3277634	3278035	-1	ref|NP_050650.1|Hypothetical protein	115bits(289)	2e-23
 3278048	3278473	-1	ref|NP_700392.1|putative base plate assembly protein	124bits(312)	4e-26
 3278656	3279672	-1	ref|NP_599048.1|tail protein	186bits(471)	2e-44
 3280593	3280991	-1	ref|NP_700390.1|tail 	118bits(295)	4e-24
 3281327	3281986	-1	ref|YP_024920.1|putative membrane protein	88.6bits(218)	4e-15
 3283574	3283903	-1	ref|NP_543097.1|hypothetical protein	55.1bits(131)	4e-05
 3284033	3284194	-1	ref|YP_024954.1|gp34 	70.1bits(170)	1e-09
 3284595	3286085	-1	ref|NP_599043.1|tail sheath protein	329bits(843)	1e-87
 3286139	3286282	-1	ref|NP_599042.1|unknown 	48.5bits(114)	0.004
 3287250	3288161	-1	ref|NP_758919.1|ORF26 	100bits(248)	1e-18
 3289695	3290579	-1	ref|NP_046900.1|gp5 	202bits(514)	2e-49
 3290642	3292192	-1	ref|NP_918995.1|putative portal protein	227bits(578)	6e-57
 3292617	3293762	-1	ref|NP_918997.1|putative terminase large subunit (carboxy-end terminase)	152bits(384)	2e-34
 3298097	3298612	-1	ref|NP_061574.1|Orf78 	125bits(314)	3e-26
 3298696	3299124	-1	ref|NP_944248.1|hypothetical protein	72.8bits(177)	2e-10
 3299809	3300111	-1	ref|YP_024754.1|p26 	62.0bits(149)	4e-07
 3300453	3300773	-1	ref|YP_164300.1|hypothetical protein	115bits(289)	2e-23
 3301955	3302230	-1	ref|NP_944232.1|hypothetical protein	43.9bits(102)	0.10
 3303141	3303617	-1	ref|NP_852739.1|putative DNA replication protein O	117bits(292)	9e-24
 
 >PredictedProphage3 
 Length:   9519 
 Number of hits =   6 
 GC	Coding	First	Second	Third
 62.17 	 61.71 	 60.23 	 47.44 	 77.46 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 3313605	3313916	1	ref|NP_061574.1|Orf78 	107bits(267)	7e-21
 3315258	3315401	1	ref|NP_944262.1|hypothetical protein	53.1bits(126)	2e-04
 3315548	3315874	1	ref|NP_892112.1|hypothetical protein	152bits(383)	3e-34
 3317447	3318343	1	ref|NP_536393.1|conserved hypothetical protein	372bits(955)	1e-100
 3319932	3320885	1	ref|NP_700401.1|Integrase protein	70.1bits(170)	1e-09
 3322590	3323123	-1	ref|NP_932589.1|hypothetical protein	63.9bits(154)	9e-08
 
 >PredictedProphage4 
 Length:   20246 
 Number of hits =   6 
 GC	Coding	First	Second	Third
 60.98 	 64.37 	 65.87 	 49.64 	 77.59 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 3914520	3915467	-1	ref|NP_064745.1|gp7 	50.4bits(119)	0.001
 3920182	3920880	-1	ref|NP_918994.1|putative head-tail preconnector protein	164bits(416)	4e-38
 3923203	3923763	-1	ref|NP_943837.1|gp59 	58.9bits(141)	3e-06
 3926426	3927328	-1	ref|NP_061531.1|integrase 	90.5bits(223)	9e-16
 3931272	3931598	-1	ref|NP_052288.1|hypothetical protein	51.2bits(121)	6e-04
 3934415	3934765	1	ref|NP_945089.1|gp58 	51.2bits(121)	6e-04
 
 >PredictedProphage5 
 Length:   10149 
 Number of hits =   5 
 GC	Coding	First	Second	Third
 61.67 	 61.08 	 63.46 	 44.23 	 75.55 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 4817065	4817376	-1	ref|NP_705641.1|gp15 	52.0bits(123)	4e-04
 4820827	4821018	1	ref|NP_043468.1|hypothetical protein	44.7bits(104)	0.059
 4823009	4823296	-1	ref|NP_597898.1|regulatory protein cI	41.6bits(96)	0.50
 4823858	4824091	-1	ref|NP_612999.1|CI protein	42.7bits(99)	0.22
 4826056	4827213	1	ref|NP_848235.1|integrase 	186bits(473)	1e-44