BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig195 (323,322 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 278 2e-73 ref|NP_061653.1|transposase 141 3e-32 ref|YP_006919.1|putative RNaseH ribonuclease 104 4e-21 ref|NP_050636.1|putative protease protein 100 1e-19 ref|NP_938240.1|protease (I) and scaffold (Z) proteins 100 1e-19 ref|NP_945089.1|gp58 85 3e-15 ref|YP_195193.1|hypothetical protein 82 2e-14 ref|NP_046572.1|ABC transporter 76 2e-12 ref|NP_612844.1|Gp15 protein 73 2e-11 ref|NP_803721.1|ORF155 72 3e-11 ref|NP_817947.1|gp96 70 8e-11 ref|NP_040341.1|putative transposase 69 2e-10 ref|NP_695158.1|minor capsid protein 67 9e-10 ref|NP_818239.1|gp188 64 6e-09 ref|NP_938226.1|putative integral membrane protein 60 1e-07 ref|NP_046584.1|putative transglycosylase 60 1e-07 ref|NP_958252.1|hypothetical protein 58 6e-07 ref|NP_943827.1|gp49 57 1e-06 ref|NP_835609.1|hypothetical protein 51 7e-05 ref|NP_938231.1|hypothetical protein 50 9e-05 ref|NP_813780.1|internal virion protein D 49 2e-04 ref|NP_112710.1|ORF47 49 3e-04 ref|NP_108727.1|minor structural protein 3 49 3e-04 ref|NP_536425.1|putative helix-turn-helix transcriptional regulator 49 3e-04 ref|NP_945111.1|gp80 49 3e-04 ref|NP_076626.1|endopeptidase 49 3e-04 ref|NP_046877.1|putative non-heme haloperoxidase 48 4e-04 ref|NP_663686.1|structural protein 48 4e-04 ref|NP_052116.1|internal virion protein D 46 0.002 ref|NP_690787.1|immunity repressor 45 0.003 ref|NP_075512.2|hypothetical protein 45 0.005 ref|NP_040733.1|morphogenesis protein B 45 0.005 ref|NP_803346.1|tail fiber protein 44 0.006 ref|NP_817650.1|gp61 44 0.008 ref|YP_006619.1|Gp39 43 0.019 ref|NP_777327.1|hypothetical protein 42 0.042 ref|NP_803396.1|tail length tape measure protein 41 0.072 ref|YP_006616.1|Gp36 41 0.072 ref|NP_891600.1|Gp44 40 0.093 ref|NP_958298.1|hypothetical protein 40 0.093 ref|NP_046933.1|gp38 40 0.093 ref|YP_024964.1|putative prophage repressor protein 40 0.12 ref|NP_064745.1|gp7 40 0.16 ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase access... 40 0.16 ref|NP_058454.1|orf 16 39 0.21 ref|YP_006601.1|Gp21 39 0.21 ref|NP_932394.1|DNA polymerase accessory protein 39 0.27 ref|NP_817883.1|gp32 38 0.46 ref|YP_164723.1|orf88 38 0.46 ref|NP_690779.1|ORF46 38 0.46 >ref|NP_945090.1|gp59 Length = 429 Score = 278 bits (712), Expect = 2e-73 Identities = 158/405 (39%), Positives = 220/405 (54%) Frame = -1 Query: 67530 RGAIAAAVIGNWLEFFDFTVYGFFAVLIGRLFFXXXXXXXXXXXSVATFAAGFFTRPLGS 67351 R A+ A ++GN E+FDF Y FF+V+I +LFF SV+T GFF RP+G Sbjct: 20 RRAVIAVIVGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLLSVSTIGVGFFMRPIGG 79 Query: 67350 VVLGVYADRKGRKAALNLTIMLMALGTGLIAIAPTYAQAGVAAPLLIVVARLMQGFSQGG 67171 +V+G AD+ GR+AAL +TI LM GT +I APTY AG+ APL+IVVARL+QGFS GG Sbjct: 80 IVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGG 139 Query: 67170 EFGAATSTLSEHGGTSRRAFRASWQLATQGGAALMGSGFAALLSNTLTKDALEGWGWRLP 66991 E G AT+ L E R + SW A+ G A ++ S A + L + +E WGWR+P Sbjct: 140 EMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWRIP 199 Query: 66990 FFAGLLIAPVGMYLRRRLADDAPGDHHHAIERGVLRELFSKHARXXXXXXXXVMGGTVST 66811 F GL + PVG+Y+R RL D E + E+ +R V+ TV + Sbjct: 200 FLLGLGLGPVGIYIRSRLNDPGFPADERLGECAPVVEVVRSFSREALVGFGLVVFWTVCS 259 Query: 66810 YILTFYMPTYAIHTLGVPMKLSMFVGVASGCVMLVTCPLFGWLSDRLGSRRMPIFVGRGX 66631 Y+L FY+PTYA L +P + ++L PL G LSD G RR + Sbjct: 260 YVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLFG-RRWFLAGALLV 318 Query: 66630 XXXXLFPAFWLMNHHPTLSVILPLTALMLLFYSLGSASEMALMCESLPRHVRATGISIAY 66451 +P F ++N P L +L + L + +A + + P V +TGISI+Y Sbjct: 319 AIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFPDGVLSTGISISY 378 Query: 66450 ALAVTIFGGTAQLVATWLVKTTGSKLAPAGYVAACVVLSLIAVAM 66316 LAV FGG + + TW + TT + LAPA YV A ++SLI+V++ Sbjct: 379 NLAVITFGGFSAAIITWAIATTHNNLAPAFYVIAAAIVSLISVSL 423 Score = 214 bits (546), Expect = 3e-54 Identities = 119/400 (29%), Positives = 202/400 (50%), Gaps = 1/400 (0%) Frame = +2 Query: 299999 KRAVSAMAIGNAMEWFDFGVYSYIAVTLGKVFFPSSSPSXXXXXXXXXXXXXXVVRPLGG 300178 +RAV A+ +GN EWFDF YS+ +V + K+FFPS+ + +RP+GG Sbjct: 20 RRAVIAVIVGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLLSVSTIGVGFFMRPIGG 79 Query: 300179 MVFGPLGDRIGRQRVLAATMIMMAVGTFAIGLIPSYASIGIMAPVLLLVARLVQGFSTGG 300358 +V G + D++GR+ L T+ +M GT IG P+Y G+ AP++++VARL+QGFS GG Sbjct: 80 IVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGG 139 Query: 300359 EYGGAATFIAEFSTDKRRGFMGSFLEFGTLIGYVMGAGVVALLTASLSEDALLSWGWRVP 300538 E GGA ++ E +R G+ S+++ ++ + + + L E + SWGWR+P Sbjct: 140 EMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWRIP 199 Query: 300539 FLIAGPLGLIGLYIRMKLEETPAFKRQAEAREAQDKAVPKTRFRETLFANWRALLLCVGL 300718 FL+ LG +G+YIR +L + P F A E + P E + + R L+ GL Sbjct: 200 FLLGLGLGPVGIYIRSRLND-PGF----PADERLGECAPVV---EVVRSFSREALVGFGL 251 Query: 300719 VLIFNVTDYMVLSYLPSFMSSTLHFDESHSXXXXXXXXXXXXXXXXAAGRLSDRIGRKPV 300898 V+ + V Y++L Y+P++ S L S G LSD GR+ Sbjct: 252 VVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLFGRRWF 311 Query: 300899 MLAGCVGLLALSIPSMMLIHAGT-TASVFXXXXXXXXXXSCFTGVMPSALPALFPTEIRY 301075 + + + + P +++A ++ + + G + +AL +FP + Sbjct: 312 LAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFPDGVLS 371 Query: 301076 GALAIGFNVSVSLFGGTTPLVTAWLVDVTQNLMMPAYYMM 301195 ++I +N++V FGG + + W + T N + PA+Y++ Sbjct: 372 TGISISYNLAVITFGGFSAAIITWAIATTHNNLAPAFYVI 411 Score = 140 bits (354), Expect = 5e-32 Identities = 105/394 (26%), Positives = 168/394 (42%), Gaps = 5/394 (1%) Frame = +1 Query: 17587 EFYDFIIFVFFAPAIGQLFFPHDIPDWLRQLQTFGIFAAGYLARPLGGVIMAHFGDLFGR 17766 E++DFI + FF+ I +LFFP D L L + G+ RP+GG+++ D GR Sbjct: 33 EWFDFISYSFFSVIIAKLFFP-STDDNLSLLLSVSTIGVGFFMRPIGGIVIGGIADKVGR 91 Query: 17767 KRMFTLSVLMMSVPTLLMGLLPTYDTIGIXXXXXXXXXXXXQGAAVGGEVPGAWVFVSEH 17946 + T+++ +M+ T ++G PTY G+ QG + GGE+ GA ++ E Sbjct: 92 RAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGGEMGGATAYLRER 151 Query: 17947 VPSRHIXXXXXXXXXXXXXXXXXXXXVAAAINSRYSGAEVTAFAWRIPFLLGGVFGLFSV 18126 VP+ +A I ++ ++ WRIPFLLG G + Sbjct: 152 VPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWRIPFLLGLGLGPVGI 211 Query: 18127 YLRRWLHETPVFAEMXXXXXXXXEIPLKAVLRDHGRAVIVSMLLTWMLSAAIVVVILMTP 18306 Y+R L++ A+ P+ V+R R +V L + V++ P Sbjct: 212 YIRSRLNDPGFPADERLGEC----APVVEVVRSFSREALVGFGLVVFWTVCSYVLLFYIP 267 Query: 18307 ALLQKQFHLAPATTLFANSIATLCLTAGCITAGSLAGWIGAKRVLGIGGLVLAACYYLLF 18486 K L +T A + + G L+ G + L LV Y LF Sbjct: 268 TYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLFGRRWFLAGALLVAIVAAYPLF 327 Query: 18487 AQV--AADASTLPLYYGIAGFTVGTI-GAVPFVMVRSFPAVVRFSGISFSYNVAYAIFGG 18657 A + A TL ++ + G + + G + + FP V +GIS SYN+A FGG Sbjct: 328 AMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFPDGVLSTGISISYNLAVITFGG 387 Query: 18658 LTPVIV--SLMMKSNPLAPVAYVAAICVLGAIAV 18753 + I+ ++ N LAP YV A ++ I+V Sbjct: 388 FSAAIITWAIATTHNNLAPAFYVIAAAIVSLISV 421 >ref|NP_061653.1|transposase Length = 328 Score = 141 bits (356), Expect = 3e-32 Identities = 103/322 (31%), Positives = 150/322 (46%), Gaps = 2/322 (0%) Frame = -3 Query: 265252 YQHLSAEERATIMILLQQGCSARGIARTLRRSPSTITREIRRALQWPQRTAFVPAGSGGC 265073 Y HL+ ERA I +L Q+ S R IAR L+RS STI+REI R A + Sbjct: 16 YNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISRN----NLNQSYQAETAQK 71 Query: 265072 TYDXXXXXXXXXXXRLKRRRHPKLAEDGVLFGVVHHFLLEGWSPSQIAGTLKRMWPDDLD 264893 Y+ R P+L ++ ++L WSP QI G L L Sbjct: 72 NYETKRKLCGRPT-----RFTPELGN------IIKYYLKCHWSPEQIVGRL-------LQ 113 Query: 264892 RRVSHETIYNCIYAMPRGELRKELIACLRRAQAKRMPRSRGQDRRGQLPDAVSIHLRPPE 264713 ++ +TIY I + + ELI+CLR+ ++ P+ + RG+ I RP E Sbjct: 114 NQICFKTIYRWINS---NMINFELISCLRQKGKRQKPK----ETRGKFNIGRPISQRPKE 166 Query: 264712 ANERAFPGHWEGDLLKGAANRS--AXXXXXXXXXXXXXLAKLKDATAASALEGFTAKLRS 264539 +R GHWE D + + +S + D ++ S ++ Sbjct: 167 IKKRNTFGHWEADTIVSSRGKSKGCIATFAERKSRYYYCVLMPDRSSNSMETAINNLIKH 226 Query: 264538 IAEPMRKTLTYDRGKEMARHPELSEATGIRVYFCDPRSPWQRGSCENINGLLRQYLPKGT 264359 + + KT+T DRGKE + + + I VYF DP S WQRG+ EN NGLLR++ PK T Sbjct: 227 LPKGAVKTITVDRGKEFSCYQNIENQFNINVYFADPYSAWQRGTNENTNGLLREFFPKKT 286 Query: 264358 DLSVYSQEELDAIADRLNSRPR 264293 DL+ +QE+L+ D +N RPR Sbjct: 287 DLAKVNQEQLNYALDSINYRPR 308 >ref|YP_006919.1|putative RNaseH ribonuclease Length = 158 Score = 104 bits (260), Expect = 4e-21 Identities = 57/143 (39%), Positives = 80/143 (55%), Gaps = 11/143 (7%) Frame = +2 Query: 297773 IYTDGACKGNPGPGGWGALLRYGDREKEL---FGGEPNTTNNRMELMGVIAALE-ALKRP 297940 +YTDGACK NPGPG WG ++ Y D + L G P TTNN MEL ++ AL ++K+ Sbjct: 6 VYTDGACKSNPGPGAWGFIV-YDDNDDRLGSKSGYSPKTTNNEMELTAIVEALRWSVKKD 64 Query: 297941 CR-VIVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWKRLDALVAQH------E 298099 R ++++TDS Y + G+ W+ W++KGW A N +LW+ L Q+ Sbjct: 65 NRPIVIYTDSAYCKNGMESWMFSWQRKGWKKADGEVPLNLELWQEAFKLTQQYINFHNTN 124 Query: 298100 IEWRWVKGHAGHPENERADALAN 298168 + VKGH+G NE DAL N Sbjct: 125 PTFIKVKGHSGISGNEAVDALCN 147 >ref|NP_050636.1|putative protease protein Length = 361 Score = 99.8 bits (247), Expect = 1e-19 Identities = 57/144 (39%), Positives = 82/144 (56%), Gaps = 11/144 (7%) Frame = -3 Query: 263776 RIIPSGAFRAQDGRPINAPA---WKMDNRIAQILIQAANARTDDYLIDFEHASLSAQGPV 263606 +++P+G F A+DGRP + W +D IA L++ A D LID+EH L + Sbjct: 23 QLLPAGHFSARDGRPFDVTGGQGWFIDGEIAGRLVEGVRALNQDVLIDYEHNQLRKDKGL 82 Query: 263605 P-----AAGWFK--QLEWREGDGLFVVGARWTERAKAMLQAGEYRYVSPVFSY-APDGAV 263450 P AAGWF +++WREG+GLF + RWT A+ + GE+ Y+S VF Y GAV Sbjct: 83 PPEQLVAAGWFNADEMQWREGEGLF-IHPRWTAAAQQRIDDGEFGYLSAVFPYDTATGAV 141 Query: 263449 TALLSIALTNNPALSGLTDLGAIA 263378 + ALTN+P +G+ L A+A Sbjct: 142 LQIRLAALTNDPGATGMKKLTALA 165 >ref|NP_938240.1|protease (I) and scaffold (Z) proteins Length = 326 Score = 99.8 bits (247), Expect = 1e-19 Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 3/117 (2%) Frame = -3 Query: 263731 INAPAWKMDNRIAQILIQAANARTDDYLIDFEHASLSAQG---PVPAAGWFKQLEWREGD 263561 ++ P W++D A +I+ A +R ++D+EH +L + P PAAG F EWREG Sbjct: 1 MDVPGWRIDAASAAAVIERARSRKTPPVLDYEHQTLKKEQNGQPAPAAGRFLDFEWREGS 60 Query: 263560 GLFVVGARWTERAKAMLQAGEYRYVSPVFSYAPDGAVTALLSIALTNNPALSGLTDL 263390 GL+ +T RA +++ GEY Y SPVFSYAPDG V ++L A+TN+PA+ GL L Sbjct: 61 GLWG-RVEYTARAAKLIEDGEYLYFSPVFSYAPDGTVLSILMGAMTNDPAIDGLEPL 116 >ref|NP_945089.1|gp58 Length = 297 Score = 85.1 bits (209), Expect = 3e-15 Identities = 81/284 (28%), Positives = 115/284 (40%), Gaps = 5/284 (1%) Frame = +1 Query: 128143 FVASAKYLNFSYAARELGLTPSAVSRQIASLEALFGVKLFVREGRGLTLTRAGEVYHARV 128322 F A+A++ NF+ AA EL + AVS+Q+ LE G LFVR+ + L LTRAG+ Y RV Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRV 74 Query: 128323 VAPLREIGNASIELLSARENRDLLTIASVPTFTTKWLLPRLTRFLAGAPGVTLGFRRHLA 128502 A L + A+ L+ + LTIA T +L R+ F A P V++ Sbjct: 75 HAILADCVEAT-ALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILVREG 133 Query: 128503 PGDPFPFGLDAAIRY-GDGAWEGIRSDYLDGRTFVPVCTREFAERHALRGPADVATAPRL 128679 + D + Y D GI + C F + P D+ A L Sbjct: 134 VFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRV-PPQDLMEATLL 192 Query: 128680 VHEQAESAWSEWAQRHHAT----RMNALAGARFEQYSVLIQAVQAGLGIALVPRFLILDN 128847 V E+ + W W T Y VL+Q G G L + +I Sbjct: 193 VAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAILGWKHMITPL 252 Query: 128848 LAAGTLIEPFDAPVDLDAQGHYLCYAPERLATSDALRRFREWML 128979 + +G L+ DA G Y P + A+ FREW+L Sbjct: 253 VESGKLVLASDAHASFG--GAYQVIWPADRRDTPAVTMFREWLL 294 Score = 73.2 bits (178), Expect = 1e-11 Identities = 70/293 (23%), Positives = 120/293 (40%), Gaps = 6/293 (2%) Frame = +2 Query: 49370 LQAMQVFTRVVDTSSFTKAAETLSLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGA 49549 LQ + F +FT+AAE L++ + +V+ + LE FLG L R + L LT G Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 49550 AYYERCVRILADVEETEASFQNNNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDL 49729 Y +R ILAD E A + PH L I L + + EF +P++ + Sbjct: 69 QYADRVHAILADCVEATALVM-KEQTPH-SLTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 49730 QLGLSDRPVDLLQEGVDC-VIRVGALQDSSLVARRVGLFECVSVAAPAYL-DKYGEPRSI 49903 ++ + + +L D V + + + + + + AP +L + P+ + Sbjct: 127 RILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVPPQDL 186 Query: 49904 ED----LAEHKAVNYFSSRTGRTIDWTFLTDGKEVEVKMNAIVSVNDADAYVTCGLEGFG 50071 + +AE + + R DW LT G E+ + +S N + L G G Sbjct: 187 MEATLLVAEEQQRQWMGWR-----DWFRLTVG-EIGFRPARTISANSYPVLLQLALHGHG 240 Query: 50072 LIQPPLFMVLPHLRDGRLKEVLPGLKPLPMPISVVYPHSRHLSPKVRVFVDWI 50230 I M+ P + G+L V++P R +P V +F +W+ Sbjct: 241 AILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWL 293 Score = 47.4 bits (111), Expect = 8e-04 Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 1/140 (0%) Frame = +2 Query: 93632 FVCVAHHKSLRAAARELGVTQPAITHTIRELETALNAELLVRSVRGVDLTACGHALLPRA 93811 F A H + AA EL V Q A++ + +LET L L VR + + LT G R Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRV 74 Query: 93812 EQLLGDMRRTVEAVEQVKGEMSGR-VAVGTMPSIALTALPHAVTAFRRAMPNVSLHLEEV 93988 +L D VEA V E + + + A L + F P VS+ + Sbjct: 75 HAILAD---CVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSV---RI 128 Query: 93989 TVPDALAQLHNGTLDIAAMH 94048 V + + L+ DI + Sbjct: 129 LVREGVFNLNAAEFDIGVYY 148 Score = 45.4 bits (106), Expect = 0.003 Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 1/155 (0%) Frame = -2 Query: 114182 GSLSAAAAQLYTTQPTVSRRLQALERSLGMRLLQRTTHAMRLTVDGERCFTRAKELLAGW 114003 G+ + AA +L Q VS+++ LE LG L R A+ LT G++ R +LA Sbjct: 22 GNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHAILAD- 80 Query: 114002 AAFEADLRGAQEEPDGLLRVAVPHAFGQERFVAPLAQFLRDYPRVSVEWLLQDEVRDFVG 113823 EA +E+ L +A +A+F ++P VSV L+++ V + Sbjct: 81 -CVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILVREGVFNLNA 139 Query: 113822 SGIDCAI-QVGEPSDPGVVAIRLTKVPRFVVAAPS 113721 + D + + + PG+ + AP+ Sbjct: 140 AEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPT 174 Score = 42.7 bits (99), Expect = 0.019 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 3/150 (2%) Frame = +1 Query: 118378 AVADTGSFEQAAVRLHVTASAVTQRVRALEASLGTPLVLR-TRPCRPTIAGQRVLQHLRR 118554 A A G+F +AA L+V AV+++V LE LGT L +R + T AGQ Q+ R Sbjct: 17 AAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ---QYADR 73 Query: 118555 VALLQADL--QSTLAAERASPISVTIALNSDSLGTWFLPALTSVLAGERILFELIVEDQD 118728 V + AD + L + +P S+TIA S + T FL + + E + + ++ Sbjct: 74 VHAILADCVEATALVMKEQTPHSLTIACASGT-ATLFLADRIAEFSAEHPEVSVRILVRE 132 Query: 118729 HTFALLESGMAVGCVTTESKPMRGCVATPL 118818 F L + +G P G T + Sbjct: 133 GVFNLNAAEFDIGVYYIRDVPPPGIAGTAI 162 Score = 38.9 bits (89), Expect = 0.27 Identities = 39/132 (29%), Positives = 56/132 (42%), Gaps = 11/132 (8%) Frame = +2 Query: 316895 LYYFWVVVKEGGFARAAQRLDMAVQTISAQVRELEKSLGHQLLRPAGRGVALTDAGRAAY 317074 L +F + G F RAA+ L++A +S QV +LE LG L + + LT AG+ Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71 Query: 317075 ARAEVIFE---------MGRLIPDDVRAAAGRPTVRLAVGLADGISKLAAHAILAPVLET 317227 R I M P + A T L LAD I++ +A E Sbjct: 72 DRVHAILADCVEATALVMKEQTPHSLTIACASGTATLF--LADRIAEFSA--------EH 121 Query: 317228 P--ALRLLCHEG 317257 P ++R+L EG Sbjct: 122 PEVSVRILVREG 133 >ref|YP_195193.1|hypothetical protein Length = 120 Score = 82.4 bits (202), Expect = 2e-14 Identities = 41/80 (51%), Positives = 51/80 (63%) Frame = -2 Query: 214451 GRDFHGRRTANGERFNMNALTAAHRTLPLSSYIKVTNASTGKWVVVKVNDRGPFKRGRVL 214272 G +HG+RTANGER+N + AHR LP + ++VTN TGK V+V+VNDRGP+ R L Sbjct: 36 GDGYHGQRTANGERYNAYGKSVAHRYLPFGTRLRVTNQRTGKSVIVRVNDRGPYVYDRDL 95 Query: 214271 DLSYAAAKMIGLVHAGTGRV 214212 DLSY A I G RV Sbjct: 96 DLSYGAFSTIAPPSQGVARV 115 >ref|NP_046572.1|ABC transporter Length = 705 Score = 76.3 bits (186), Expect = 2e-12 Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 5/184 (2%) Frame = -2 Query: 31655 LRDVTLDVRRGEVFGIIGRSGAGKSTLLRLVNGLERASSGSVRVHGVEVGTLDDDGLVAL 31476 + D+ L + R + IIG SG GKST + ++ L + S+ ++G+++ D +++ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDH---LSI 555 Query: 31475 RRRTGMVFQHFNLLSAKTVFENVALPLKIAGVPKAERVRKVDALLELVGLAAKRDAYPAS 31296 R+R + ++ L T+ EN+ + +I + E + E + K+ +Y S Sbjct: 556 RKRIVYIDENPFLFKG-TIKENLCMG-EIFDQNEIENACIMSQCHEFICNLDKQYSYKLS 613 Query: 31295 -----LSGGQKQRVGIARALVHDPEVLLCDEATSALDPETTQSILALLADINRRLGLTIV 31131 LS GQKQR+ +ARA++H P+VL+ DE+ S +DP+ T+ I L R+ I+ Sbjct: 614 ENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETL----HRMDCLII 669 Query: 31130 LITH 31119 LITH Sbjct: 670 LITH 673 Score = 60.5 bits (145), Expect = 9e-08 Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 4/205 (1%) Frame = -3 Query: 276910 IEVNNLNFFYNKF-HALKNINLRIPEGKVTAFIGPSGCGKSTLLRTFNKMFALYPEQRAE 276734 I+ NLN + + +++INL + IG SG GKST ++ +K++ + + Sbjct: 483 IKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKV-----PD 537 Query: 276733 GEILMDGENLLTTKRDISLLRARIGMVFQKPTPFPMSIYDNIAFGVKMFEKLTRSEMDDR 276554 I ++G ++ + D +R RI + + P F +I +N+ G E ++E+++ Sbjct: 538 KSIYLNGLDI--NRYDHLSIRKRIVYIDENPFLFKGTIKENLCMG----EIFDQNEIENA 591 Query: 276553 VEWALTKAALWSEVKD---KLNXXXXXXXXXXXQRLCIARGIAIRPEVLLLDEPCSALDP 276383 + + + K KL+ QRL +AR I +P+VL+LDE S +DP Sbjct: 592 CIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDP 651 Query: 276382 ISTGRIEELIAELKSDYTVVIVTHN 276308 +T I E + + D ++++THN Sbjct: 652 DNTKLIYETLHRM--DCLIILITHN 674 Score = 53.5 bits (127), Expect = 1e-05 Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 16/228 (7%) Frame = -1 Query: 6348 IEHLSVRYGA---RTVLEDLSLSIGAGEFLTVLGKSGCGKTTLLRFIAGFVKADGLTGTL 6178 I+ +++ GA R ++ED++L + + + ++G+SG GK+T + ++ K + L Sbjct: 483 IKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYL 542 Query: 6177 SVAGRDLT---HAPPHKRNLGLLFQNYALFPHLSVFENVAFGL--------RARRMASSE 6031 + G D+ H KR + + +N LF ++ EN+ G A M+ Sbjct: 543 N--GLDINRYDHLSIRKR-IVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCH 598 Query: 6030 VTRRVADALKLVQLGDAGHHLPAQLSGGMQQRVALARALVIEPDVLLLDEPLSALDANLR 5851 D +L + G + LS G +QR+ALARA++ +P VL+LDE LS +D + Sbjct: 599 EFICNLDKQYSYKLSENG----SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPD-- 652 Query: 5850 ASVRSELKALHERLPNL--TVVCVTHDRDDALVLSDRALLLRDGRIAQ 5713 K ++E L + ++ +TH+ D + ++ L+ R+ RI + Sbjct: 653 -----NTKLIYETLHRMDCLIILITHN-DPSNFKYNKKLVFRNNRIIE 694 Score = 47.4 bits (111), Expect = 8e-04 Identities = 39/160 (24%), Positives = 82/160 (51%), Gaps = 4/160 (2%) Frame = -1 Query: 181578 VDGVSFDVKRGETVGLVGESGCGKSTLARALVGLVPMTAGTVRWRGQAVAP-DHLRGTAM 181402 V+ ++ + R + V ++GESG GKST A++L L + ++ G + DHL ++ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHL---SI 555 Query: 181401 RREVQMIFQDPL---ASLDPRMTIEQIVAEPLVTHHAGLGRAEVRRRVITMLERVGLNAH 181231 R+ + I ++P ++ + + +I + + + + + I L++ ++ Sbjct: 556 RKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCH---EFICNLDKQ--YSY 610 Query: 181230 HLLRYPHEFSGGQCQRIGIARALIGEPKLVICDEPVSALD 181111 L S GQ QR+ +ARA++ +P+++I DE +S +D Sbjct: 611 KLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNID 650 >ref|NP_612844.1|Gp15 protein Length = 983 Score = 72.8 bits (177), Expect = 2e-11 Identities = 41/108 (37%), Positives = 54/108 (50%), Gaps = 5/108 (4%) Frame = +3 Query: 255888 PAAGNVVRTF----DGSKSKGIDIANSAGTPVQAAATGTVVYAGNGLRGYGNLIILKHNA 256055 P G + TF G K GID GTPV+ + G V+ YG + + H Sbjct: 860 PTTGTITATFPTYPSGGKHDGIDFGTPIGTPVRVSKDGVVIKRRELTTSYGKYLFVDHGG 919 Query: 256056 DYLTAYAHNRALLVREGQSVTQGQTIAEMGSS-DSDRVALHFELRYGG 256196 +T YAHN LLV EG V +GQ IA+ G++ +S LH+ELR G Sbjct: 920 GLITIYAHNSELLVNEGDRVKRGQIIAKTGNTGNSTGPHLHWELRVNG 967 >ref|NP_803721.1|ORF155 Length = 482 Score = 72.0 bits (175), Expect = 3e-11 Identities = 41/107 (38%), Positives = 59/107 (55%), Gaps = 7/107 (6%) Frame = +2 Query: 297875 NTTNNRMELMGVIAALEALKRPC--RVIVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPV 298048 N TNN EL I A + R+ + DS+YV+KG++ ++ W K W+ + TPV Sbjct: 71 NPTNNTGELTAAIEAFKIAHEADAPRLTMLMDSEYVRKGMTAYLPKWIKSNWIKSDGTPV 130 Query: 298049 KNADLWKRLDALVAQHE-----IEWRWVKGHAGHPENERADALANRG 298174 N DLWK++ L A+ E + +WV+GH G NE+ADA A G Sbjct: 131 ANQDLWKQMVELKAKWEETNKPLSIQWVRGHNGDIGNEKADANAKLG 177 >ref|NP_817947.1|gp96 Length = 566 Score = 70.5 bits (171), Expect = 8e-11 Identities = 62/247 (25%), Positives = 107/247 (43%), Gaps = 5/247 (2%) Frame = -2 Query: 284285 FSDVAGCDEAKE-EVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 284109 F +V G D KE + + + + + + + ++P+G +L+G G GKTL +A+ E Sbjct: 281 FDNVGGLDVFKEWAIRQKIAYSPEARAYNL---KLPKGAMLIGVSGCGKTLSCQALGAEW 337 Query: 284108 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVXXXXXXXXXXGND 283929 P + + +VG +R+R +F + IV+IDE++ G Sbjct: 338 NWPVVRLDINALKGKYVGESESRLRGIFSKIDALGQVIVYIDEVEKALEGAVSGSADGGV 397 Query: 283928 EREQTLNQMLVEMDGFEANSGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIRGREQ 283749 + L +L M + V++ A N L LR GRFD ++ LP R Sbjct: 398 SAD-ALGAILTWMQDRAGQAFVMMTA--NDPSKLPPEFLRKGRFDEVWWIDLPTRAERMS 454 Query: 283748 IMRVHLR---KVPIANDVDAAVIARGTPGFSGADLANLVNEAALF-AARRGKRIVEMQDF 283581 + LR + +D +A T GF+GA++A + A+F A G R + +D Sbjct: 455 VAAATLRSNGRDAETLGIDLGAVADATNGFTGAEIAACIEHDAMFNAFADGGREITTEDI 514 Query: 283580 EDAKDKI 283560 A ++ Sbjct: 515 LHAAGEV 521 >ref|NP_040341.1|putative transposase Length = 322 Score = 69.3 bits (168), Expect = 2e-10 Identities = 89/333 (26%), Positives = 143/333 (42%), Gaps = 13/333 (3%) Frame = -3 Query: 265252 YQHLSAEERATIMILL----------QQGCSARGIARTLRRSPSTITREIRRALQWPQRT 265103 Y HLS ++ + LL +Q SA IA+ L R STI REI+R + + Sbjct: 2 YSHLSFMDKVKLEQLLLSKIFLKKNGEQNISA--IAKYLNRHRSTILREIKRFKTIDEYS 59 Query: 265102 AFVPAGSGGCTYDXXXXXXXXXXXRLKRRRHPKLAEDGVLFGVVH-HFLLEGWSPSQIAG 264926 A+ S Y+ K + K E+ + F +H F + SPS++ Sbjct: 60 AYK---SDKMYYEKRK----------KNNKRFKFTEEQLNF--IHLRFNVYHDSPSELI- 103 Query: 264925 TLKRMWPDDLDRRVSHETIYNCIYAMPRGELRKELIACLRRAQAKRMPRSRGQDRRGQLP 264746 + + V +T+Y I G L++ L R K+ R D RG+L Sbjct: 104 -YRYFLKFKVKFPVCVKTLYKWIRLGFYGFLKQNL-----RHHGKKYKRKGKSDNRGKLT 157 Query: 264745 DAVSIHLRPPEANERAFPGHWEGDLLKGAANRSAXXXXXXXXXXXXXLAKLKDATAASAL 264566 D SI N+ + G E D + G ++SA KL++ TA Sbjct: 158 DFKSIW---DIDNKVSNVGWLEMDTVVGKDHKSAILVLVEQLSKKYFAIKLENHTAREVE 214 Query: 264565 EGFTAKL--RSIAEPMRKTLTYDRGKEMARHPELSEATGIRVYFCDPRSPWQRGSCENIN 264392 + F + ++ ++ +T DR KE ++ E+ +VYFCD SP Q+ E +N Sbjct: 215 KKFKDIIIKNNLIGKIKGIIT-DRRKEFSKWREMEIFAETQVYFCDAGSPQQKPLIEYMN 273 Query: 264391 GLLRQYLPKGTDLSVYSQEELDAIADRLNSRPR 264293 LR + PKGTD + SQ+++D + + +N + R Sbjct: 274 SELRHWFPKGTDFNKVSQKQIDWVVNVINDKLR 306 >ref|NP_695158.1|minor capsid protein Length = 1608 Score = 67.0 bits (162), Expect = 9e-10 Identities = 44/104 (42%), Positives = 57/104 (54%), Gaps = 4/104 (3%) Frame = +3 Query: 255921 GSKSKGIDIANSAGTPVQAAATGTVVYAGNGLRGYGNLIILK-HNADYLTAYAHNRALLV 256097 G KGID A GTP+ A GTVV AG G+GN +++K A T Y H + + V Sbjct: 1254 GGFHKGIDFAAPLGTPIPAQYGGTVVQAGPA-SGFGNWVVIKPSGASVDTIYGHMKRMKV 1312 Query: 256098 REGQSVTQGQTIAEMGS-SDSDRVALHFELR--YGGRSIDPARY 256220 + GQ V GQ IA +GS S +H+ELR GG+S +P Y Sbjct: 1313 KTGQHVKAGQIIAWVGSEGQSSGPHVHYELRAGLGGKSYNPMTY 1356 >ref|NP_818239.1|gp188 Length = 318 Score = 64.3 bits (155), Expect = 6e-09 Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Frame = +2 Query: 57281 GIMLIADEVQTGFARTGKLFAMQQYDVLADLITMAKSLAGGMPLSGVVGRADVMDAAAPG 57460 G ++ADE TGF R G+++ Q Y D I GG+ L GV+G A+++D A G Sbjct: 136 GRTVVADESATGFGRLGRIWGHQAYGFTPDAIIFGGPAGGGLTLGGVIGPAELLDDAFVG 195 Query: 57461 GLGGTYAGNPLAVASAHAVLDIIDEEKLCERATQLGDALKAKLNALRADIAP-IADVRGP 57637 + AG PLA A+ A L I+ E L E + G +L AL +AD G Sbjct: 196 PM----AGAPLACATGAATLAAINPE-LLEHVREEGVTFGERLRALVDRFGDYLADTAGS 250 Query: 57638 GAMVAVEFVNP 57670 G ++F +P Sbjct: 251 GLYHTLDFRSP 261 >ref|NP_938226.1|putative integral membrane protein Length = 149 Score = 60.1 bits (144), Expect = 1e-07 Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 1/133 (0%) Frame = -3 Query: 266569 VMPEQARHLCSVLGPESAIQLLNEFGGQIIHIPKKATNFTSPTLARIAVTFGESVIDMLA 266390 ++P+ R + +G + + ++ + GG I + A +A G + + L Sbjct: 14 MLPDTVRDMAGRIGLPATLVVVEQLGGTSWRIAEGRARRGEARRAALAELVGSDIEEQLH 73 Query: 266389 KEFGGEHLYLPMLTDAIRKMRDRTICRDFERMLRS-RTANEAVATLARRHKISDRQVWRI 266213 + GE +Y+ A+ + RD I FE+ LR +TA ++ LAR++ +SDR +W I Sbjct: 74 THYRGEEIYVARCHKALVRWRDLEIVERFEQGLRDGQTARSLLSDLARQYNLSDRWIWEI 133 Query: 266212 LKKPLDATARRET 266174 + +P + ++ T Sbjct: 134 VNRPSEPAPQQST 146 Score = 38.1 bits (87), Expect = 0.46 Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 2/112 (1%) Frame = -3 Query: 266989 IGIDSTLQLIYECGGTTLSIPKVR-RDGNDVFERLSEVVGRNEAIRLCEQFGSNGGRTYI 266813 IG+ +TL ++ + GGT+ I + R R G L+E+VG + +L + G Y+ Sbjct: 26 IGLPATLVVVEQLGGTSWRIAEGRARRGEARRAALAELVGSDIEEQLHTHY--RGEEIYV 83 Query: 266812 PRLSSAMKYARAHQIRERFRE-LRKHGGASAAVRVLSVETRMTNRNVWRILS 266660 R A+ R +I ERF + LR A + + L+ + +++R +W I++ Sbjct: 84 ARCHKALVRWRDLEIVERFEQGLRDGQTARSLLSDLARQYNLSDRWIWEIVN 135 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 59.7 bits (143), Expect = 1e-07 Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 2/102 (1%) Frame = +3 Query: 255924 SKSKGIDIANSAGTPVQAAATGTVVYAGNGLRGYGNLIILKHNADYLTAYAHN-RALLVR 256100 S KG D A AGT +++ +G V AG + GN +++K + + Y H V+ Sbjct: 1578 SPHKGTDFAAKAGTAIKSLQSGKVQIAGYS-KTAGNWVVIKQDDGTVAKYMHMLNTPSVK 1636 Query: 256101 EGQSVTQGQTIAEMGSS-DSDRVALHFELRYGGRSIDPARYL 256223 GQSV GQTI ++GS+ +S LH ++ G++IDP +Y+ Sbjct: 1637 AGQSVKAGQTIGKVGSTGNSTGNHLHLQIEQNGKTIDPEKYM 1678 Score = 45.1 bits (105), Expect = 0.004 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Frame = -3 Query: 295612 PTELALLPFIESAYNPQALSVAKAAGMWQFMPGTGRTYNLKRNMWQDERRDVLASTSAAL 295433 P +A + ES +N +A S A G+ Q MP T ++ + N D ++V+ T Sbjct: 1437 PALIAAVIQQESGFNAKARSGVGAMGLMQLMPATAKSLGV--NNAYDPYQNVMGGTK--- 1491 Query: 295432 DYLSRLHDMFG-DWYLALAAYNWGEGNVQRAIARNQAAGLPTDYQNLRMPNETRNYVPKL 295256 YL++ + FG + ALAAYN G GNV + Y + ET+NYV K+ Sbjct: 1492 -YLAQQLEKFGGNVEKALAAYNAGPGNVIK-------------YGGIPPFKETQNYVKKI 1537 Query: 295255 QA 295250 A Sbjct: 1538 MA 1539 >ref|NP_958252.1|hypothetical protein Length = 263 Score = 57.8 bits (138), Expect = 6e-07 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 19/182 (10%) Frame = +1 Query: 298237 RQIILDTETTGLNPRSGDRLIEIGCVEL-LNRRLTGNNLHIYVNPERDSDPGALAVHGLT 298413 R + D ETTG++ DR++ ++L + LT L +P + GA AVHG+T Sbjct: 6 RMVAFDLETTGVDVEQ-DRIVTAAAIDLGAEKPLT---LEWLADPGIEIPEGATAVHGIT 61 Query: 298414 TEFLSDKPKFA-EVADQIRDFVK-----GAELIIHNAPFDLGFLDAEFARLGLPPFIEHC 298575 TE + + A +V DQ+ + + G ++ HN P+DL LD E R LP + Sbjct: 62 TEHAREHGERAHDVVDQVAETLALRVRDGVPVVGHNVPYDLTLLDRECRRYELPLLQDRL 121 Query: 298576 DG----VIDTLAEAKQMFPGKR--------NSLDALCDRFGISNAHRTLHGALLDSELLA 298719 DG VIDT + P ++ L L + + HG D+ + A Sbjct: 122 DGTPLHVIDTRVLDQHCLPYRKRVSETQGARQLITLAQVYSLPWDAEAAHGCSYDALMAA 181 Query: 298720 EV 298725 + Sbjct: 182 RI 183 >ref|NP_943827.1|gp49 Length = 429 Score = 57.0 bits (136), Expect = 1e-06 Identities = 43/112 (38%), Positives = 57/112 (50%), Gaps = 11/112 (9%) Frame = +3 Query: 255921 GSKSKGIDIANSAGTPVQAAATGTVVYAGNGLRGYGNLIILKHNA---DYLTAYAH---N 256082 GS+ +G+D A GTP+ AA GTV Y G G+G I++ H A T Y H Sbjct: 17 GSQHRGLDFAAKDGTPIYAAQGGTVAYIGRA-DGFGQWIVIDHPAADGGGTTVYGHMWDA 75 Query: 256083 RALLVREGQSVTQGQTIAEMGSS-DSDRVALHFELR----YGGRSIDPARYL 256223 A +R+GQ V GQ IA +G++ S LHFE+ G IDP +L Sbjct: 76 FATGLRQGQRVEAGQLIAYVGTNGQSTGPHLHFEVHPTVWRQGSQIDPKPWL 127 >ref|NP_835609.1|hypothetical protein Length = 321 Score = 50.8 bits (120), Expect = 7e-05 Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 6/60 (10%) Frame = -3 Query: 85303 LKVGLVLSGGGAKGAYQVGVMRALAEVGA----QIDMVAGASIGALNGAIVAS--AVTPQ 85142 +K L+LSGGGAKGA+Q GV+ L GA +I VAG S+G++NG AS A+TP+ Sbjct: 1 MKKLLILSGGGAKGAFQAGVISCLVREGALKDNEILAVAGTSVGSINGVWCASRAALTPK 60 >ref|NP_938231.1|hypothetical protein Length = 166 Score = 50.4 bits (119), Expect = 9e-05 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Frame = +3 Query: 267882 MSYPMSTRARLRTAIVERGLSMQEAARTVGVPYGTAVNWRRDASKSGDDWLVARKRKASL 268061 M++P TR LR A V S++ AA GV YGTA W++ A GDDW A+ + Sbjct: 1 MAHPKETRDALRRAYVLDRQSLEVAAAMFGVSYGTARRWKQQAEAEGDDWDKAQSAQLLA 60 Query: 268062 ------TPQNLFSRALAAYERTLDEIERDPNLSP 268145 + + + + ++ T++ I+ D ++ P Sbjct: 61 GGGLEDVARQVLAGLVTQFQATMEAIQVDADIKP 94 >ref|NP_813780.1|internal virion protein D Length = 1392 Score = 49.3 bits (116), Expect = 2e-04 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 2/117 (1%) Frame = -3 Query: 295696 RPDYVQRMTERSQKYLYHIVEELEARHMPTE-LALLPFIESAYNPQALSVAKAAGMWQFM 295520 R D ++ Y I + +A +P E L FIES++NP A S G+ QF Sbjct: 3 RKDEYAKLVAEGTPYDDAIRQAADANGVPYEYLHKKIFIESSFNPDAKSPTGPLGLGQFT 62 Query: 295519 PGTGRTYNLKRNMWQDERRDVLASTSAALDYLSRLHDMF-GDWYLALAAYNWGEGNV 295352 TG+ Y L M ++R D + S +A+ Y L + GD AYN G G + Sbjct: 63 KATGKAYGL---MTDEDRLDPIKSINASAQYTRDLMGTYKGDMLKVALAYNQGNGRL 116 >ref|NP_112710.1|ORF47 Length = 918 Score = 48.9 bits (115), Expect = 3e-04 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = +3 Query: 255939 IDIAN-SAGTPVQAAATGTVVYAG-NGLRGYGNLIILKHNADYLTAYAHNRALLVREGQS 256112 +D+ N + TP+ A+ G VV AG N YGN ++KH T YAH + V GQ+ Sbjct: 813 MDLVNGNPTTPILASGDGQVVQAGSNYYDWYGNYTVIKHADGLYTGYAHQSRIDVSVGQN 872 Query: 256113 VTQGQTIAEMGSS 256151 V +GQ I MG++ Sbjct: 873 VKKGQQIGLMGAT 885 >ref|NP_108727.1|minor structural protein 3 Length = 906 Score = 48.9 bits (115), Expect = 3e-04 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = +3 Query: 255939 IDIAN-SAGTPVQAAATGTVVYAG-NGLRGYGNLIILKHNADYLTAYAHNRALLVREGQS 256112 +D+ N + TP+ A+ G VV AG N YGN ++KH T YAH + V GQ+ Sbjct: 801 MDLVNGNPTTPILASNDGQVVQAGSNYYNWYGNYTVIKHADGLYTGYAHQSRIDVSVGQN 860 Query: 256113 VTQGQTIAEMGSS 256151 V +GQ I MG++ Sbjct: 861 VKKGQQIGLMGAT 873 >ref|NP_536425.1|putative helix-turn-helix transcriptional regulator Length = 128 Score = 48.9 bits (115), Expect = 3e-04 Identities = 29/69 (42%), Positives = 38/69 (55%) Frame = -3 Query: 186916 VDAPAALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAQALGV 186737 +DA A +RA R L+ T D A AAGISKP+LSQ+E + L+ IA AL V Sbjct: 56 LDAELAGDHPVRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAV 115 Query: 186736 TVQYFVDTP 186710 V ++ P Sbjct: 116 PVDDLIELP 124 >ref|NP_945111.1|gp80 Length = 128 Score = 48.9 bits (115), Expect = 3e-04 Identities = 29/69 (42%), Positives = 38/69 (55%) Frame = -3 Query: 186916 VDAPAALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAQALGV 186737 +DA A +RA R L+ T D A AAGISKP+LSQ+E + L+ IA AL V Sbjct: 56 LDAELAGDHPVRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAV 115 Query: 186736 TVQYFVDTP 186710 V ++ P Sbjct: 116 PVDDLIELP 124 >ref|NP_076626.1|endopeptidase Length = 894 Score = 48.9 bits (115), Expect = 3e-04 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = +3 Query: 255939 IDIAN-SAGTPVQAAATGTVVYAG-NGLRGYGNLIILKHNADYLTAYAHNRALLVREGQS 256112 +D+ N + TP+ A+ G VV AG N YGN ++KH T YAH + V GQ+ Sbjct: 789 MDLVNGNPTTPILASGDGQVVQAGSNYYDWYGNYTVIKHADGLYTGYAHQSRIDVSVGQN 848 Query: 256113 VTQGQTIAEMGSS 256151 V +GQ I MG++ Sbjct: 849 VKKGQQIGLMGAT 861 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 48.1 bits (113), Expect = 4e-04 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 1/116 (0%) Frame = +3 Query: 39870 LSSGISLPYVERGSGAPMVFVHGSLCDYRYWEPQLASLSVH-YRCIAPSLSHYWPAVEAG 40046 L+ G + G+GAP+VF+HG + +E L L+ H +R IA +++ + Sbjct: 8 LADGFRVGVSTVGTGAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRS--GS 65 Query: 40047 IQDEFSWQNHVDELAEFIDALDLGPVHLVGHSRGGSVAFNVARQHPQLVDTLTLAD 40214 + + ++ + +D LD+ GHS GG + +A +HP V L D Sbjct: 66 LPTGHTVEDMTRVTLKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLD 121 >ref|NP_663686.1|structural protein Length = 908 Score = 48.1 bits (113), Expect = 4e-04 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = +3 Query: 255939 IDIAN-SAGTPVQAAATGTVVYAG-NGLRGYGNLIILKHNADYLTAYAHNRALLVREGQS 256112 +D+ N + TP+ A+ G VV AG N YGN ++KH T YAH + V GQ+ Sbjct: 803 MDLVNGNPTTPILASNDGQVVQAGSNYYDWYGNYTVIKHADGLYTGYAHQSRIDVSVGQN 862 Query: 256113 VTQGQTIAEMGSS 256151 V +GQ I MG++ Sbjct: 863 VKKGQQIGLMGAT 875 >ref|NP_052116.1|internal virion protein D Length = 1320 Score = 45.8 bits (107), Expect = 0.002 Identities = 43/123 (34%), Positives = 57/123 (46%), Gaps = 2/123 (1%) Frame = -3 Query: 295603 LALLPFIESAYNPQALSVAKAAGMWQFMPGTGRTYNLK-RNMWQDERRDVLASTSAALDY 295427 L L F ES++NP+A S G+ QF GT LK + D+R + + AA + Sbjct: 29 LRKLAFNESSFNPKAKSPTGPKGLMQFTKGTATALGLKVTDADDDDRYNPELAVDAAARH 88 Query: 295426 LSRLHDMF-GDWYLALAAYNWGEGNVQRAIARNQAAGLPTDYQNLRMPNETRNYVPKLQA 295250 LS L + GD A AYN GEG R A A D+ ++ E RNY+ L Sbjct: 89 LSDLIRKYDGDELKAALAYNQGEG---RNGAPQMQAYDKGDWASI--SEEGRNYMRNLMD 143 Query: 295249 VKN 295241 V N Sbjct: 144 VAN 146 >ref|NP_690787.1|immunity repressor Length = 144 Score = 45.4 bits (106), Expect = 0.003 Identities = 25/77 (32%), Positives = 44/77 (57%) Frame = -3 Query: 186898 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAQALGVTVQYFV 186719 +G +I+A+R+ K T A A +S+ +L+ +ER +PSL++L +A ALG+ V V Sbjct: 3 VGQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSAIV 62 Query: 186718 DTPSEERSVCRGEQLRF 186668 E ++ + EQ + Sbjct: 63 G----EETLIKEEQAEY 75 >ref|NP_075512.2|hypothetical protein Length = 2067 Score = 44.7 bits (104), Expect = 0.005 Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 9/123 (7%) Frame = +3 Query: 255882 IWPAAGNVVR--TFDGSKSKGIDIANSAGTPVQAAATGTVVYAGNGLRGYGNLIILKHNA 256055 IW G F+G + GID +GT V A G G GN I +K A Sbjct: 1690 IWQRFGRYTGGLNFNGGRHYGIDFGMPSGTNVYAVKGGIADKVWTDYGG-GNSIQIKTGA 1748 Query: 256056 DYLTAYAHNRALLVREGQSVTQGQTIAEMGSSDS--DRVALHFELRYGGR-----SIDPA 256214 + Y H L R+GQ + GQ I + G++ + LHF+L G + DP Sbjct: 1749 NEWNWYMHLSKQLARQGQRIKAGQLIGKSGATGNFVRGAHLHFQLMQGSHPGNDTAKDPE 1808 Query: 256215 RYL 256223 ++L Sbjct: 1809 KWL 1811 >ref|NP_040733.1|morphogenesis protein B Length = 258 Score = 44.7 bits (104), Expect = 0.005 Identities = 21/44 (47%), Positives = 35/44 (79%), Gaps = 1/44 (2%) Frame = +3 Query: 255627 YRVERGDTLYKIARDNRTSLANIVRWN-QITNPDAIEVGQVLRV 255755 ++V+ GDTL KIA DN+T+++ ++ N +ITNP+ I+VGQ +R+ Sbjct: 214 HKVKSGDTLSKIAVDNKTTVSRLMSLNPEITNPNHIKVGQTIRL 257 >ref|NP_803346.1|tail fiber protein Length = 2066 Score = 44.3 bits (103), Expect = 0.006 Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 9/123 (7%) Frame = +3 Query: 255882 IWPAAGNVVR--TFDGSKSKGIDIANSAGTPVQAAATGTVVYAGNGLRGYGNLIILKHNA 256055 IW G+ F+G + GID GT + A G G GN I +K A Sbjct: 1689 IWQRFGSYTGGLNFNGGRHYGIDFGMPTGTNIYAVKGGIADKVWTDYGG-GNSIQIKTGA 1747 Query: 256056 DYLTAYAHNRALLVREGQSVTQGQTIAEMGSSDS--DRVALHFELRYGGR-----SIDPA 256214 + Y H L R+GQ + GQ I + G++ + LHF+L G + DP Sbjct: 1748 NEWNWYMHLSKQLARQGQRIKAGQLIGKSGATGNFVRGAHLHFQLMQGSHPGNDTAKDPE 1807 Query: 256215 RYL 256223 ++L Sbjct: 1808 KWL 1810 >ref|NP_817650.1|gp61 Length = 274 Score = 43.9 bits (102), Expect = 0.008 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 4/119 (3%) Frame = +3 Query: 39870 LSSGISLPYVERGSGAPMVFVHGSLCDYRYWEPQLASLSVHYRCIAPSLSHYWPAVEAGI 40049 L G + + G+G P+VF+HG +E L L+ + AV G Sbjct: 10 LDDGFRVGVSQVGTGVPLVFLHGLTVSALAYEELLIELAQRGFAVTAL-----DAVNHGR 64 Query: 40050 QDEFSWQNHVDELAEF----IDALDLGPVHLVGHSRGGSVAFNVARQHPQLVDTLTLAD 40214 D + + V+E+ +DAL + VGHS GG + +A ++P+ V L D Sbjct: 65 TDSLPFGHTVEEMTRVTLRALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILLD 123 >ref|YP_006619.1|Gp39 Length = 202 Score = 42.7 bits (99), Expect = 0.019 Identities = 27/91 (29%), Positives = 46/91 (50%) Frame = +1 Query: 298243 IILDTETTGLNPRSGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPGALAVHGLTTEF 298422 +I+DTETTGL D +IEI + + L L+ V P R P A ++ +T E Sbjct: 22 VIIDTETTGL--MDFDEIIEITIINMRGEIL----LNSLVKPSRPIPPEATKINHITNEM 75 Query: 298423 LSDKPKFAEVADQIRDFVKGAELIIHNAPFD 298515 ++D P +++V + + + + N+ FD Sbjct: 76 VADAPTWSDVFPAVLKIIWKYKWLAWNSSFD 106 >ref|NP_777327.1|hypothetical protein Length = 196 Score = 41.6 bits (96), Expect = 0.042 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +3 Query: 255960 GTPVQAAATGTVVYAGNGLRGYGNLIILKH-NADYLTAYAHNRALLVREGQSVTQGQTIA 256136 G PV A G VV AG +G +++L H +A T Y H R +LV G V GQ I Sbjct: 66 GQPVHAMTDGRVVIAGR-FPVWGGMVVLWHPSAGVWTRYGHLRDILVHPGDVVVAGQQIG 124 Query: 256137 EMGSSDSDRVA-LHFEL 256184 +G + LHF++ Sbjct: 125 TIGKMTTGGYCHLHFDV 141 >ref|NP_803396.1|tail length tape measure protein Length = 1550 Score = 40.8 bits (94), Expect = 0.072 Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 3/99 (3%) Frame = +3 Query: 255966 PVQAAATGT--VVYAGNGLRGYGNLIILKHNADYLTAYAHNRALLVREGQSVTQGQTIAE 256139 PV + G V+ NG GYG + + A YAH V+ GQ V GQT+ Sbjct: 1200 PVPSTINGRAQVMPVHNG--GYGKWVKIVKGA-LEVIYAHLSKYKVKTGQQVRVGQTVGI 1256 Query: 256140 MGSSD-SDRVALHFELRYGGRSIDPARYLPAR*TRGPST 256253 G++ S LH+E+R+ GR DP +L G ST Sbjct: 1257 SGNTGFSTGPHLHYEMRWNGRHRDPLPWLRKNNGGGKST 1295 >ref|YP_006616.1|Gp36 Length = 202 Score = 40.8 bits (94), Expect = 0.072 Identities = 22/59 (37%), Positives = 33/59 (55%) Frame = -3 Query: 186895 GSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAQALGVTVQYFV 186719 G +++A R LK TL A + GIS P + +ERG PSL +A+ L + VQ+ + Sbjct: 9 GERLKARRLELKMTLKQVAESVGISLPGVQNLERGDVMPSLEIGLALAKCLRMPVQWIL 67 >ref|NP_891600.1|Gp44 Length = 324 Score = 40.4 bits (93), Expect = 0.093 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Frame = -2 Query: 284192 GRIPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFVGVGAARVRD--MFEQ 284019 GRIP +L PGTGKT +A+A+ + V + ++G+D F+ R ++ Sbjct: 40 GRIPSMILHSPSPGTGKTTVAKALCEDVGVDYLFVNGADCKIDFIRDEITRFAQSVSLDE 99 Query: 284018 AKKHAPCIVFIDEID 283974 K+ +V IDE D Sbjct: 100 EKREKGKVVIIDEYD 114 >ref|NP_958298.1|hypothetical protein Length = 393 Score = 40.4 bits (93), Expect = 0.093 Identities = 22/59 (37%), Positives = 33/59 (55%) Frame = -3 Query: 186913 DAPAALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAQALGV 186737 D+P LG++I A R+ + + + A A +S L +ERG SPS +L +A AL V Sbjct: 3 DSPRELGARIAARRRARRLSQPELAAVAHVSLSMLRAIERGARSPSDATLEALADALDV 61 >ref|NP_046933.1|gp38 Length = 202 Score = 40.4 bits (93), Expect = 0.093 Identities = 23/59 (38%), Positives = 32/59 (54%) Frame = -3 Query: 186895 GSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAQALGVTVQYFV 186719 G +++A R LK TL A A GIS P + +ERG PSL +A+ L VQ+ + Sbjct: 9 GERLKARRLELKLTLKQVAEAVGISLPGVQNLERGDVMPSLEIGLSLAKCLRKPVQWIL 67 >ref|YP_024964.1|putative prophage repressor protein Length = 244 Score = 40.0 bits (92), Expect = 0.12 Identities = 29/95 (30%), Positives = 44/95 (46%) Frame = -3 Query: 186898 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAQALGVTVQYFV 186719 +G++IR LR+ TL A GIS+ +S+ E G + P L +A+ L V+Y + Sbjct: 7 IGTRIRELRKAKGLTLQQLADVFGISRASVSEWESGRSKPDANKLVLLAKELHTAVEYLL 66 Query: 186718 DTPSEERSVCRGEQLRFFGFADSANLFARLTNVTE 186614 + G+ FADSA RL T+ Sbjct: 67 N----------GDTNDAMSFADSAASRRRLRGGTK 91 >ref|NP_064745.1|gp7 Length = 540 Score = 39.7 bits (91), Expect = 0.16 Identities = 53/214 (24%), Positives = 73/214 (34%), Gaps = 2/214 (0%) Frame = -1 Query: 239247 IGDLGTANVPASCSNNGARTSANTTGDLGANGILGIGPAPLDCGATCATSTSPTYNNYYA 239068 + D+ A A + A + N N A L A ++T+ + A Sbjct: 70 LADVEAAKAAALVAQAAAELAENNAETAEVNAEASETAAGLSATAAATSATNAGASETAA 129 Query: 239067 CPNGNASCTVAL--VPTSQQVANPVHHFATDNNGVIVQMPTVSNSGQGSATGLLTFGIGT 238894 + AS T A ++ Q A A +NS SA+G Sbjct: 130 SASATASATSATNSATSASQAATSASAAAVSEGNAATSETNAANSAT-SASG-------- 180 Query: 238893 QSNNALGASTQLTSTSAGDVDATFLGSSVTAFFDTGSNAYFFNDAAQTTCSTNTQFYCPS 238714 AST T SA V AT +S + + +NA + AA T TN Sbjct: 181 ------SASTATTQASAASVSATNAATSASNAATSATNAAA-SQAAAATSETNAA--ASE 231 Query: 238713 STVTYSATLTGKNGASGGVSMPVGNADALFAAPS 238612 STVT SAT + A+ S A AA S Sbjct: 232 STVTTSATNAATSEANAATSASTATTQATNAATS 265 >ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase accessory protein Length = 320 Score = 39.7 bits (91), Expect = 0.16 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Frame = -2 Query: 284219 DPQKFQKL--GGRIPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFV-GVG 284049 D + F+ L G++P +L PGTGKT +A+A+ + ++GSD FV G Sbjct: 29 DHETFKSLVSKGKLPHIILHSPSPGTGKTTVAKALCNDINAEMMFVNGSDCKIDFVRGPL 88 Query: 284048 AARVRDMFEQAKKHAPCIVFIDEID 283974 A R + + K P ++ IDE D Sbjct: 89 TAFARSVSMEGK---PKVIVIDEFD 110 >ref|NP_058454.1|orf 16 Length = 539 Score = 39.3 bits (90), Expect = 0.21 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +3 Query: 256020 GYGNLIILKHNADYLTAYAHNRALLVREGQSVTQGQTIAEMGSSD-SDRVALHFELRYGG 256196 GYG + + A YAH V+ GQ V GQT+ G++ S LH+E+R+ G Sbjct: 443 GYGKWVKIVKGA-LEVIYAHLSKYKVKTGQQVRVGQTVGISGNTGFSTGPHLHYEMRWNG 501 Query: 256197 RSIDPARYL 256223 R DP +L Sbjct: 502 RHRDPLPWL 510 >ref|YP_006601.1|Gp21 Length = 3433 Score = 39.3 bits (90), Expect = 0.21 Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 2/107 (1%) Frame = -1 Query: 61836 VAGEVRALAQRSANAAKEIKTLIGASVERV-ESGSRIVDGAGKTMEDIVAQV-KRVSDLI 61663 VA +V + Q ++A EI+ + +E V +S + ++ +T+ D + V K ++D + Sbjct: 857 VAQQVTDINQSIDDSASEIRQQVDGQIESVNKSITENINSVNQTLSDNITAVNKSITDAV 916 Query: 61662 AEISSSTAEQSTGVAQVDQAVVHLDNITQQNAALVEQSAAASESLKQ 61522 ++I++S +Q +A V++ +T+ +AAL Q A SLKQ Sbjct: 917 SDINTSVDQQ---IADVNKT------LTEGDAALKSQLQAVENSLKQ 954 Score = 39.3 bits (90), Expect = 0.21 Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 2/107 (1%) Frame = -1 Query: 59892 VAGEVRALAQRSANAAKEIKALIGASVERV-ESGSRIVDGAGKTMEDIVAQV-KRVSDLI 59719 VA +V + Q ++A EI+ + +E V +S + ++ +T+ D + V K ++D + Sbjct: 857 VAQQVTDINQSIDDSASEIRQQVDGQIESVNKSITENINSVNQTLSDNITAVNKSITDAV 916 Query: 59718 AEISSSTAEQSTGVAQVDQAVVHLDNITQQNAALVEQSAAASESLKQ 59578 ++I++S +Q +A V++ +T+ +AAL Q A SLKQ Sbjct: 917 SDINTSVDQQ---IADVNKT------LTEGDAALKSQLQAVENSLKQ 954 >ref|NP_932394.1|DNA polymerase accessory protein Length = 319 Score = 38.9 bits (89), Expect = 0.27 Identities = 18/39 (46%), Positives = 24/39 (61%) Frame = -2 Query: 284192 GRIPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSD 284076 GRIP +L PGTGKT +ARA+ E F ++G+D Sbjct: 40 GRIPNIILHSPSPGTGKTTVARALVAEIDAEFLFVNGAD 78 >ref|NP_817883.1|gp32 Length = 503 Score = 38.1 bits (87), Expect = 0.46 Identities = 24/54 (44%), Positives = 31/54 (57%) Frame = +2 Query: 24884 PATSHTL*QSSKGKPEVYVLGRSP*TPADVIRRRTFKVTHRTSSRDLPIDLAGS 25045 PATS TL QSS + VL + TP D+ RRR K++ T +P D+AGS Sbjct: 3 PATSGTLPQSSDDDGDSPVLDFNNLTPEDIERRRNRKLSEVTRRLVIPSDIAGS 56 >ref|YP_164723.1|orf88 Length = 464 Score = 38.1 bits (87), Expect = 0.46 Identities = 17/44 (38%), Positives = 28/44 (63%) Frame = +3 Query: 255624 YYRVERGDTLYKIARDNRTSLANIVRWNQITNPDAIEVGQVLRV 255755 YY V+ GD+ +KIA D+ T+++N+ N ++ I GQ LR+ Sbjct: 420 YYTVKSGDSFWKIANDHGTTISNLTSLNGLSMYSTIYPGQSLRI 463 >ref|NP_690779.1|ORF46 Length = 300 Score = 38.1 bits (87), Expect = 0.46 Identities = 19/43 (44%), Positives = 28/43 (65%) Frame = +3 Query: 255627 YRVERGDTLYKIARDNRTSLANIVRWNQITNPDAIEVGQVLRV 255755 Y V++GDTL +IA S+A + +N I N + I VGQVL++ Sbjct: 170 YTVKKGDTLSEIAVKTGVSMAKLQAYNGIKNANKITVGQVLKL 212 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,130,690,935 Number of Sequences: 14420 Number of extensions: 21076844 Number of successful extensions: 82423 Number of sequences better than 0.5: 50 Number of HSP's better than 0.5 without gapping: 12109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 82213 length of database: 3,019,461 effective HSP length: 129 effective length of database: 1,159,281 effective search space used: 124789643964 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig193 (293,364 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 162 2e-38 ref|NP_061653.1|transposase 141 3e-32 ref|YP_006919.1|putative RNaseH ribonuclease 94 7e-18 ref|NP_818425.1|gp127 82 3e-14 ref|NP_536389.1|conserved hypothetical protein 77 1e-12 ref|NP_945063.1|gp32 77 1e-12 ref|NP_803721.1|ORF155 72 2e-11 ref|NP_040341.1|putative transposase 69 2e-10 ref|NP_848223.1|hypothetical protein 68 5e-10 ref|YP_024782.1|p54 66 2e-09 ref|NP_899402.1|Dda 66 2e-09 ref|NP_944136.1|Dda DNA helicase 65 3e-09 ref|NP_891582.1|Dda DNA helicase 63 2e-08 ref|NP_945089.1|gp58 62 3e-08 ref|NP_542568.1|putative methyltransferase-endonuclease 62 4e-08 ref|NP_839905.1|putative methylase 61 5e-08 ref|NP_878240.1|Mth 61 5e-08 ref|NP_042036.1|DNA primase 58 5e-07 ref|NP_049632.1|Dda DNA helicase 56 2e-06 ref|YP_006615.1|Gp35 56 2e-06 ref|NP_665998.1|putative C5-cytosine methyltransferase 54 6e-06 ref|NP_150145.1|putative DNA methylase 54 8e-06 ref|NP_046932.1|gp37 54 1e-05 ref|NP_064745.1|gp7 52 3e-05 ref|NP_938228.1|putative structural protein 52 3e-05 ref|NP_861705.1|Dda DNA helicase 51 6e-05 ref|NP_818053.1|gp80 50 1e-04 ref|NP_945098.1|gp67 49 2e-04 ref|NP_817858.1|gp7 49 3e-04 ref|NP_049909.1|structural protein P5 47 0.001 ref|NP_944257.1|putative DnaC 46 0.002 ref|NP_075300.1|gp33 45 0.003 ref|NP_932377.1|DNA helicase 45 0.003 ref|NP_813725.1|gp9.1 45 0.005 ref|NP_958506.1|putative integrase 44 0.008 ref|NP_817477.1|gp27 44 0.010 ref|NP_818239.1|gp188 44 0.010 ref|NP_892081.1|relication protein RepA 44 0.010 ref|NP_046954.1|gp58 44 0.010 ref|YP_003925.1|Dam methylase 43 0.013 ref|NP_817998.1|gp25 42 0.023 ref|NP_944253.1|hypothetical protein; similar to DNA methyltrans... 42 0.030 ref|YP_006628.1|Gp48 42 0.039 ref|YP_164321.1|hypothetical protein 41 0.050 ref|NP_040602.1|Tail fiber protein 41 0.050 ref|YP_024843.1|Pas57 41 0.050 ref|NP_542284.1|unknown 40 0.086 ref|YP_024953.1|putative methyl transferase protein 40 0.086 ref|NP_943810.1|gp32 40 0.11 ref|NP_891650.1|distal long tail fiber assembly catalyst 40 0.11 ref|NP_848249.1|cytosine methylase 40 0.11 ref|NP_817363.1|gp25 40 0.15 ref|NP_695118.1|putative tail protein 39 0.25 ref|NP_945304.1|structural phage protein 39 0.25 ref|NP_510917.1|similar to Escherichia coli DnaC 39 0.33 ref|NP_046944.1|gp48 39 0.33 ref|YP_024980.1|major tail subunit 38 0.43 ref|NP_075485.1|hypothetical protein 38 0.43 ref|NP_803371.1|dnaC 38 0.43 ref|NP_958645.1|77ORF013 38 0.43 >ref|NP_945090.1|gp59 Length = 429 Score = 162 bits (409), Expect = 2e-38 Identities = 110/425 (25%), Positives = 197/425 (46%), Gaps = 9/425 (2%) Frame = +3 Query: 205590 AAGERARSQARKAAIGSFVGAVVDWYDFLLYGIVAALVFNSAFFPKVSPTMGTLAAFATF 205769 AA + R+A I VG +W+DF+ Y + ++ FFP + L + +T Sbjct: 10 AAPSASSDTHRRAVIAVIVGNGFEWFDFISYSFFSVIIAK-LFFPSTDDNLSLLLSVSTI 68 Query: 205770 GVGFLFRPLGGVVFGHYGDRLGRKRMLVLTVMLMGLSTVAIGLLPGFATIGWWAPVLLVT 205949 GVGF RP+GG+V G D++GR+ L +T+ LM T IG P + G AP+++V Sbjct: 69 GVGFFMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVV 128 Query: 205950 MRAIQGFAVGGEWGGAALMAVESAPKQKKAFXXXXXXXXXXXXXXXATGIVSILSHTLGD 206129 R +QGF+ GGE GGA E P ++ + A+ + + L + Sbjct: 129 ARLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDE 188 Query: 206130 AAFKSWGWRLPFLFSIVLVLIGLWVRKSMDESQEFVEKVEHGNRKLRLPVLEALTRHPKA 206309 +SWGWR+PFL + L +G+++R +++ F G PV+E + + Sbjct: 189 QQIESWGWRIPFLLGLGLGPVGIYIRSRLND-PGFPADERLGE---CAPVVEVVRSFSRE 244 Query: 206310 FLLIVALRLAELFTMYIVTAFALSYSTSNLGMSRDLFLSIGLLVGTVSCVTIPSFAWLAD 206489 L+ L + Y++ + +Y++ L + L+ ++ P L+D Sbjct: 245 ALVGFGLVVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSD 304 Query: 206490 RFGLRRIYLTGA-LIGLASAVPFFLALESRS-----VAWIVVFSILLANAAHDMVVSVQQ 206651 FG RR +L GA L+ + +A P F L + + + VVF +++A+ ++ ++ Sbjct: 305 LFG-RRWFLAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAAL-- 361 Query: 206652 PLFTELFGAEYRYSGAGVGYQFASVVGGGFTPFIAVALVSFAGGAWH---LVAGYLAVGC 206822 +++F +G + Y A + GGF + A++++A H A Y+ Sbjct: 362 ---SDMFPDGVLSTGISISYNLAVITFGGF----SAAIITWAIATTHNNLAPAFYVIAAA 414 Query: 206823 LISLV 206837 ++SL+ Sbjct: 415 IVSLI 419 >ref|NP_061653.1|transposase Length = 328 Score = 141 bits (356), Expect = 3e-32 Identities = 103/322 (31%), Positives = 150/322 (46%), Gaps = 2/322 (0%) Frame = -2 Query: 200060 YQHLSAEERATIMILLQQGCSARGIARTLRRSPSTITREIRRALQWPQRTAFVPAGSGGC 199881 Y HL+ ERA I +L Q+ S R IAR L+RS STI+REI R A + Sbjct: 16 YNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISRN----NLNQSYQAETAQK 71 Query: 199880 TYDXXXXXXXXXXXRLKRRRHPKLAEDGVLFGVVHHFLLEGWSPSQIAGTLKRMWPDDLD 199701 Y+ R P+L ++ ++L WSP QI G L L Sbjct: 72 NYETKRKLCGRPT-----RFTPELGN------IIKYYLKCHWSPEQIVGRL-------LQ 113 Query: 199700 RRVSHETIYNCIYAMPRGELRKELIACLRRAQAKRMPRSRGQDRRGQLPDAVSIHLRPPE 199521 ++ +TIY I + + ELI+CLR+ ++ P+ + RG+ I RP E Sbjct: 114 NQICFKTIYRWINS---NMINFELISCLRQKGKRQKPK----ETRGKFNIGRPISQRPKE 166 Query: 199520 ANERAFPGHWEGDLLKGAANRS--AXXXXXXXXXXXXXLAKLKDATAASALEGFTAKLRS 199347 +R GHWE D + + +S + D ++ S ++ Sbjct: 167 IKKRNTFGHWEADTIVSSRGKSKGCIATFAERKSRYYYCVLMPDRSSNSMETAINNLIKH 226 Query: 199346 IAEPMRKTLTYDRGKEMARHPELSEATGIRVYFCDPRSPWQRGSCENINGLLRQYLPKGT 199167 + + KT+T DRGKE + + + I VYF DP S WQRG+ EN NGLLR++ PK T Sbjct: 227 LPKGAVKTITVDRGKEFSCYQNIENQFNINVYFADPYSAWQRGTNENTNGLLREFFPKKT 286 Query: 199166 DLSVYSQEELDAIADRLNSRPR 199101 DL+ +QE+L+ D +N RPR Sbjct: 287 DLAKVNQEQLNYALDSINYRPR 308 >ref|YP_006919.1|putative RNaseH ribonuclease Length = 158 Score = 94.0 bits (232), Expect = 7e-18 Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 8/146 (5%) Frame = -1 Query: 98031 WTDGACSGNPGPGGWGAIT------QVGGREARFFGGMNP-TTNNVMELFGVLFVLESTL 97873 +TDGAC NPGPG WG I ++G + G +P TTNN MEL ++ L ++ Sbjct: 7 YTDGACKSNPGPGAWGFIVYDDNDDRLGSKS-----GYSPKTTNNEMELTAIVEALRWSV 61 Query: 97872 GRLPPGSTLSVRTDSQYVQKGVTEWLAGWKRKGWRKADGKLVLNAEWWQRTDAALIAHRA 97693 + + + TDS Y + G+ W+ W+RKGW+KADG++ LN E WQ + Sbjct: 62 KK--DNRPIVIYTDSAYCKNGMESWMFSWQRKGWKKADGEVPLNLELWQEAFKLTQQYIN 119 Query: 97692 AGNT-VNVLWVRGHAGDELNERADAL 97618 NT + V+GH+G NE DAL Sbjct: 120 FHNTNPTFIKVKGHSGISGNEAVDAL 145 >ref|NP_818425.1|gp127 Length = 247 Score = 82.0 bits (201), Expect = 3e-14 Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 8/192 (4%) Frame = -3 Query: 11251 LSYLEFFAGSGLVAEGLRGLFRPVWANDLSEKKAATYTANHGARHFHLGSIENVEG---- 11084 L++++ FAG G + L+ AN +K A H I+NV G Sbjct: 3 LTHVDLFAGIGGFSLTLQRAGAKTVANVEIDKNCRQILARHYPDAVQFDDIKNVSGDDLR 62 Query: 11083 --AVLPVADMTWASFPCQDLSLAGKQAGIHAARSGLVWQWLRALDEIPERPPVLVAENVV 10910 +P + FPCQD+S AG+ AG+ RSGL W+ +R L+E+ P + ENV Sbjct: 63 SVGFVPERGILTGGFPCQDISAAGRGAGLAGERSGLFWEIVRLLNEL--HPKWFILENVP 120 Query: 10909 GLVSAHGGEGYLQLHAALRERGYLVGAMKLDAA-RWLPQSRPRIFVVAY-RESLPLPAEL 10736 L+S HGG + AL GY + LDA +PQ R RIF+V + +S AE+ Sbjct: 121 RLLSIHGGRDMGTVVGALAGSGYGLAWRVLDAQFTGVPQRRRRIFIVGHLGDSGRASAEI 180 Query: 10735 VNDGPGWAHDTA 10700 + + G + D+A Sbjct: 181 LFERQGVSGDSA 192 >ref|NP_536389.1|conserved hypothetical protein Length = 223 Score = 76.6 bits (187), Expect = 1e-12 Identities = 45/114 (39%), Positives = 57/114 (50%), Gaps = 11/114 (9%) Frame = +2 Query: 91169 EIYKDYVGPIFRGREGAYTTDPATFGLVPRKRIRPGIK-----------LFDTMNARAET 91315 EIY DY+ P +G A FG PR + I+ + TMN R + Sbjct: 33 EIYPDYLAPTVAMIDGRVEAFLAGFGYWPRALQKANIEKAKAEGKAPPIMRSTMNVRDDN 92 Query: 91316 VGERHNFKGAWRRLQFCLVPCRTFYEPNYETGRAVRWRIGLADGAPLLVAGLWR 91477 +G+ + AWR + CL+P R YEP YETGR V RIGL D P VAG+WR Sbjct: 93 LGQSPLYGPAWRAGRRCLIPARWIYEPCYETGRNVWHRIGLTDWRPYCVAGIWR 146 Score = 73.2 bits (178), Expect = 1e-11 Identities = 35/72 (48%), Positives = 49/72 (68%), Gaps = 1/72 (1%) Frame = +2 Query: 91670 DGK-AYSFTMLTVNADEHPLMRRFHRPTDEKRSLVIVPPTEYESWLNCQSTEEARSFLRL 91846 DG+ ++ M+TVNA+ P+M R H+P DEKRS+VI+ P ++E WL + E AR+ L+L Sbjct: 152 DGRETHTMAMITVNAEGDPIMSRMHKPGDEKRSVVILRPDDWEEWLTTSNAEAARAMLQL 211 Query: 91847 YPAELMHAEPYP 91882 YPA M A P P Sbjct: 212 YPAGDMVAAPAP 223 >ref|NP_945063.1|gp32 Length = 223 Score = 76.6 bits (187), Expect = 1e-12 Identities = 45/114 (39%), Positives = 57/114 (50%), Gaps = 11/114 (9%) Frame = +2 Query: 91169 EIYKDYVGPIFRGREGAYTTDPATFGLVPRKRIRPGIK-----------LFDTMNARAET 91315 EIY DY+ P +G A FG PR + I+ + TMN R + Sbjct: 33 EIYPDYLAPTVAMIDGRVEAFLAGFGYWPRALQKANIEKAKAEGKAPPIMRSTMNVRDDN 92 Query: 91316 VGERHNFKGAWRRLQFCLVPCRTFYEPNYETGRAVRWRIGLADGAPLLVAGLWR 91477 +G+ + AWR + CL+P R YEP YETGR V RIGL D P VAG+WR Sbjct: 93 LGQSPLYGPAWRAGRRCLIPARWIYEPCYETGRNVWHRIGLTDWRPYCVAGIWR 146 Score = 73.2 bits (178), Expect = 1e-11 Identities = 35/72 (48%), Positives = 49/72 (68%), Gaps = 1/72 (1%) Frame = +2 Query: 91670 DGK-AYSFTMLTVNADEHPLMRRFHRPTDEKRSLVIVPPTEYESWLNCQSTEEARSFLRL 91846 DG+ ++ M+TVNA+ P+M R H+P DEKRS+VI+ P ++E WL + E AR+ L+L Sbjct: 152 DGRETHTMAMITVNAEGDPIMSRMHKPGDEKRSVVILRPDDWEEWLTTSNAEAARAMLQL 211 Query: 91847 YPAELMHAEPYP 91882 YPA M A P P Sbjct: 212 YPAGDMVAAPAP 223 >ref|NP_803721.1|ORF155 Length = 482 Score = 72.4 bits (176), Expect = 2e-11 Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Frame = -1 Query: 97947 FGGM-NPTTNNVMELFGVLFVLESTLGRLPPGSTLSVRTDSQYVQKGVTEWLAGWKRKGW 97771 FG + N TNN EL + + + L++ DS+YV+KG+T +L W + W Sbjct: 65 FGSVTNNPTNNTGELTAAIEAFK--IAHEADAPRLTMLMDSEYVRKGMTAYLPKWIKSNW 122 Query: 97770 RKADGKLVLNAEWWQRTDAALIAHRAAGNTVNVLWVRGHAGDELNERADALARRGSNQS 97594 K+DG V N + W++ +++ WVRGH GD NE+ADA A+ GS Q+ Sbjct: 123 IKSDGTPVANQDLWKQMVELKAKWEETNKPLSIQWVRGHNGDIGNEKADANAKLGSGQN 181 >ref|NP_040341.1|putative transposase Length = 322 Score = 69.3 bits (168), Expect = 2e-10 Identities = 89/333 (26%), Positives = 143/333 (42%), Gaps = 13/333 (3%) Frame = -2 Query: 200060 YQHLSAEERATIMILL----------QQGCSARGIARTLRRSPSTITREIRRALQWPQRT 199911 Y HLS ++ + LL +Q SA IA+ L R STI REI+R + + Sbjct: 2 YSHLSFMDKVKLEQLLLSKIFLKKNGEQNISA--IAKYLNRHRSTILREIKRFKTIDEYS 59 Query: 199910 AFVPAGSGGCTYDXXXXXXXXXXXRLKRRRHPKLAEDGVLFGVVH-HFLLEGWSPSQIAG 199734 A+ S Y+ K + K E+ + F +H F + SPS++ Sbjct: 60 AYK---SDKMYYEKRK----------KNNKRFKFTEEQLNF--IHLRFNVYHDSPSELI- 103 Query: 199733 TLKRMWPDDLDRRVSHETIYNCIYAMPRGELRKELIACLRRAQAKRMPRSRGQDRRGQLP 199554 + + V +T+Y I G L++ L R K+ R D RG+L Sbjct: 104 -YRYFLKFKVKFPVCVKTLYKWIRLGFYGFLKQNL-----RHHGKKYKRKGKSDNRGKLT 157 Query: 199553 DAVSIHLRPPEANERAFPGHWEGDLLKGAANRSAXXXXXXXXXXXXXLAKLKDATAASAL 199374 D SI N+ + G E D + G ++SA KL++ TA Sbjct: 158 DFKSIW---DIDNKVSNVGWLEMDTVVGKDHKSAILVLVEQLSKKYFAIKLENHTAREVE 214 Query: 199373 EGFTAKL--RSIAEPMRKTLTYDRGKEMARHPELSEATGIRVYFCDPRSPWQRGSCENIN 199200 + F + ++ ++ +T DR KE ++ E+ +VYFCD SP Q+ E +N Sbjct: 215 KKFKDIIIKNNLIGKIKGIIT-DRRKEFSKWREMEIFAETQVYFCDAGSPQQKPLIEYMN 273 Query: 199199 GLLRQYLPKGTDLSVYSQEELDAIADRLNSRPR 199101 LR + PKGTD + SQ+++D + + +N + R Sbjct: 274 SELRHWFPKGTDFNKVSQKQIDWVVNVINDKLR 306 >ref|NP_848223.1|hypothetical protein Length = 842 Score = 67.8 bits (164), Expect = 5e-10 Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 10/132 (7%) Frame = +2 Query: 29201 GVRNRNPGNLRDNAT----------GGFRLFDTFEDGIHSADANLLDYGVHHHINTLTGV 29350 G+RN NPGNL + T G F F+T E GI + NLL Y I+T+ + Sbjct: 250 GIRNNNPGNLEYSKTNPWVGQTGDDGRFAKFETPEHGIRALGRNLLSYQ-RQGIDTVNDI 308 Query: 29351 INRWAPAGDGDNNPAIYAAAVSKATGIGVDDVIDLRDPAVRQHILAAMFDVESPGWRVAM 29530 INRWAP D +N A Y AV G+ D +D +P + + A++ E+ + Sbjct: 309 INRWAPPSDNNNTDA-YIQAVCAQLGVTPDQPLDASNPDTLKALCASIIQHENGSQPYSD 367 Query: 29531 QQSPTAFAALTG 29566 QQ T +A G Sbjct: 368 QQLATGVSAAIG 379 >ref|YP_024782.1|p54 Length = 683 Score = 65.9 bits (159), Expect = 2e-09 Identities = 104/487 (21%), Positives = 188/487 (38%), Gaps = 88/487 (18%) Frame = +1 Query: 105757 EGRVAIISGKPGAGKTTLLKCVAPILEKDGR-------------AVHYAAPTGKAAKRMR 105897 EG+ ++G G GKTT V LE+ G ++ A T A + ++ Sbjct: 147 EGQCFALTGAAGTGKTTAQAAVVQALEEQGAFSTHNFKYIGEKDSIAIVAFTKVAVRNIQ 206 Query: 105898 QSIERPTST---------IHRMLGLGRGGAKARPDDEN---------PLKTA------SA 106005 +++++ +T IH +L + R +DE P++ A + Sbjct: 207 KALKKNPATMKYVEHCMTIHSLLEY-EPVIETRENDEGIDYEVRIFRPMRNACNRMGITH 265 Query: 106006 VVIDEASMLDAKLTLAILRSIGPKTLLVLVGDPGQLPSIRAGKVLADLMDSNAFPTARLT 106185 ++I+EASM+ L + + ++ P ++ +GD QL + +LA + + P LT Sbjct: 266 LIIEEASMVGVDLWMNLYAALNPGVQIIYLGDINQLQPVFGNPILAYAL--SKLPVIELT 323 Query: 106186 NVVRQGAQSDIV----KVARAIDSGESPDFTLHPDSPPERKKSDCVFLEEPNAQRLGDRI 106353 V RQ + I+ +V + + SP ++ + + K + LG + Sbjct: 324 EVYRQALDNPIIANAHRVLKGLPFQTSPCGRVNLITGRAKVKVGM----DHQGMALGGVM 379 Query: 106354 ANMLRNAQVDAKMDPLRDAQVIAASNVGPTGAVALNATLQAAFNPPEPNKPELHVKRTV- 106530 + Q D + D +++A N G A+N + A F N H++ + Sbjct: 380 QKLFEAGQYDPEQD-----IILSAWNKKGCGVWAMNERI-ATFLGQARNALVYHIRAAMH 433 Query: 106531 -------------KGVDQSFALRFGDKVMQTSNEASKAL------FDGPSDRSKPLEEKG 106653 K + + A+ K + T +A A G LE+ Sbjct: 434 EWYLAVGDLVLVDKRLGRIMAIEENPKYVGTVTKAPGAYTRGGTPLVGGKTEEVNLEDVD 493 Query: 106654 IFNGDVGYIVAMDR-------------VSMWVQFDNGHAHF--------------SNDEA 106752 N D+G I A + S++V +++ +F + + A Sbjct: 494 YTNFDLGDIKAANEDEDDESMTKRAASHSVFVAWEDQVDNFPDGIPRDMWHEMKSAGEFA 553 Query: 106753 RKSLTLSYANTVHKFQGSESPLIFFAMHESTPKPLLTRNLAYTAITRARTKCIVIGSERR 106932 ++ +Y TVHK QGSE +F H +L+R L YTA+TRA+ + G E Sbjct: 554 KEKFQFAYCLTVHKSQGSEWRKVFLITHYD-HSSMLSRELIYTALTRAKEEFSCFGKEDL 612 Query: 106933 LNEAAGR 106953 + +A R Sbjct: 613 IEKACAR 619 >ref|NP_899402.1|Dda Length = 411 Score = 65.9 bits (159), Expect = 2e-09 Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 13/232 (5%) Frame = +1 Query: 105775 ISGKPGAGKTTLLKCVAPILEKDGRAVHYAAPTGKAAKRMRQSIERPTSTIHRMLGLGRG 105954 ISG G+GKT L+K + LE G+ V PT +A + ++ + STIH +L Sbjct: 13 ISGPAGSGKTFLMKSILEALESKGKNVTMVTPTHQAKNVLHKATGQEVSTIHSLL----- 67 Query: 105955 GAKARPD------------DENPLKTASAVVIDEASMLDAKLTLAILRSIGPKTLLVLVG 106098 K PD + L +V++EASM+D +L R++ K ++ VG Sbjct: 68 --KIHPDTYEDQKHFTQSGEVEGLDEIDVLVVEEASMVDEELFQITGRTMPRKCRILAVG 125 Query: 106099 DPGQLPSIR-AGKVLADLMDSNAFPTARLTNVVRQGAQSDIVKVARAIDSGESPDFTLHP 106275 D QL ++ V++ F T + VVRQ + +++VA + +G+ L Sbjct: 126 DKYQLQPVKHEPGVISPFF--TKFSTFEMNEVVRQAKDNPLIQVATEVRNGQ----WLRT 179 Query: 106276 DSPPERKKSDCVFLEEPNAQRLGDRIANMLRNAQVDAKMDPLRDAQVIAASN 106431 + ER++ L PN ++ D + + + + L D +++A +N Sbjct: 180 NWSKERRQG---VLHVPNVNKMLDTYLSKVNSP------EDLLDYRILAYTN 222 Score = 45.8 bits (107), Expect = 0.002 Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 4/154 (2%) Frame = +1 Query: 136795 IKGAAGTGKTTVAKGIARTFELAGSNVFGTAISSGAAAILGKEAGIESFTVADLL----S 136962 I G AG+GKT + K I E G NV + A +L K G E T+ LL Sbjct: 13 ISGPAGSGKTFLMKSILEALESKGKNVTMVTPTHQAKNVLHKATGQEVSTIHSLLKIHPD 72 Query: 136963 RLERGEHKAQGTEPPKLPLGDKSVLFVDESGMIDTRSMHKLMGYQKEIGFKMVWFGDTRQ 137142 E +H Q E L + VL V+E+ M+D + ++ G +++ GD Q Sbjct: 73 TYEDQKHFTQSGEVE--GLDEIDVLVVEEASMVD-EELFQITGRTMPRKCRILAVGDKYQ 129 Query: 137143 LAPVAAGNVQLTTEANYGHLNSASMSEITRQKEE 137244 L PV + + ++ M+E+ RQ ++ Sbjct: 130 LQPVK--HEPGVISPFFTKFSTFEMNEVVRQAKD 161 >ref|NP_944136.1|Dda DNA helicase Length = 454 Score = 65.1 bits (157), Expect = 3e-09 Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 10/168 (5%) Frame = +1 Query: 105775 ISGKPGAGKTTLLKC-VAPILEKDGRAVHYAAPTGKAAKRMRQSIERPTSTIHRMLGLG- 105948 ISG G+GK+ L K + +L+ + AV APT +A + + STIH +L + Sbjct: 33 ISGPAGSGKSFLTKILIQKLLDLNSGAVITCAPTHQAKIVLSKMSGFTASTIHSVLKIHP 92 Query: 105949 ------RGGAKARPDD-ENPLKTASAVVIDEASMLDAKLTLAILRSIGPKTLLVLVGDPG 106107 R +++ D + LK +++DEASM+D L +L+S+ P ++ +GD Sbjct: 93 DTYEDVREFKQSKSDKAKEDLKAVRYLIVDEASMVDNDLFEILLKSVHPFCQIIAIGDKH 152 Query: 106108 QLPSIR-AGKVLADLMDSNAFPTARLTNVVRQGAQSDIVKVARAIDSG 106248 Q+ +R A ++ F A L VVRQ A + I++VA I +G Sbjct: 153 QIQPVRHAPGEISPFFTDKRFRLAELKTVVRQQAGNPIIQVATKIRNG 200 >ref|NP_891582.1|Dda DNA helicase Length = 463 Score = 62.8 bits (151), Expect = 2e-08 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 7/166 (4%) Frame = +1 Query: 105775 ISGKPGAGKTTLLKCVAPILEKDG-RAVHYAAPTGKAAKRMRQSIERPTSTIHRMLGLGR 105951 + G G GKT ++K + + + G V A PT +A K + +++ R T+H +L L Sbjct: 33 VRGAAGTGKTAMMKFIVQEMVRRGVTGVVLATPTHQAKKVLSKAVGRQAFTLHALLRLNP 92 Query: 105952 GGAKA----RPDDENPLKTASAVVIDEASMLDAKLTLAILRSIGPKTLLVLVGDPGQLPS 106119 + D L +++DEASM+D KL +++SI + +++ VGD QL Sbjct: 93 TNYEDTQVFEQKDTPKLDDVQIIIVDEASMVDKKLFDILMKSINGRIVIIAVGDLYQLRP 152 Query: 106120 I--RAGKVLADLMDSNAFPTARLTNVVRQGAQSDIVKVARAIDSGE 106251 + ++ F LT + R A I+ VA A+ +G+ Sbjct: 153 VDPSGATSISPFFTDERFQNVELTEIKRSNA--PIIDVATAVRNGK 196 Score = 50.1 bits (118), Expect = 1e-04 Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 7/153 (4%) Frame = +1 Query: 136795 IKGAAGTGKTTVAKGIARTFELAGSNVFGTAISS---GAAAILGKEAGIESFTVADLLSR 136965 ++GAAGTGKT + K I + E+ V G +++ A +L K G ++FT+ LL Sbjct: 33 VRGAAGTGKTAMMKFIVQ--EMVRRGVTGVVLATPTHQAKKVLSKAVGRQAFTLHALLRL 90 Query: 136966 LERGEHKAQGTEPPKLP-LGDKSVLFVDESGMIDTRSMHKLMGYQKEIGFKMVWF--GDT 137136 Q E P L D ++ VDE+ M+D + LM K I ++V GD Sbjct: 91 NPTNYEDTQVFEQKDTPKLDDVQIIIVDEASMVDKKLFDILM---KSINGRIVIIAVGDL 147 Query: 137137 RQLAPV-AAGNVQLTTEANYGHLNSASMSEITR 137232 QL PV +G ++ + ++EI R Sbjct: 148 YQLRPVDPSGATSISPFFTDERFQNVELTEIKR 180 >ref|NP_945089.1|gp58 Length = 297 Score = 62.0 bits (149), Expect = 3e-08 Identities = 43/147 (29%), Positives = 69/147 (46%) Frame = -2 Query: 259022 LQNMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGE 258843 LQ + F G+FT AA+ LN GA+S+ V +LE L T L R + L LT AG+ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 258842 NYLRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPTLTRYHAQYPDVSI 258663 Y R ILAD E A E+ L + + ++ + + A++P+VS+ Sbjct: 69 QYADRVHAILADC--VEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 258662 ELSLSQRMPDLFDGTSDMAVVTASSLP 258582 + + + + +L D+ V +P Sbjct: 127 RILVREGVFNLNAAEFDIGVYYIRDVP 153 Score = 53.9 bits (128), Expect = 8e-06 Identities = 38/126 (30%), Positives = 56/126 (44%) Frame = +3 Query: 200907 GSLNRAADRIGRSQSAVSQQMRKLETQIGQPLFRRQGRGLVPTEAGDLMLSYARRILELN 201086 G+ RAA+ + +Q AVS+Q+ KLET +G LF R + L T AG IL Sbjct: 22 GNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHAILADC 81 Query: 201087 DEAVQAIRGSAIEGAVRFGLPGDFAESWLPTALGQFKRTHPAVRVEIVVERNGQLLERLD 201266 EA + ++ A +L + +F HP V V I+V + L+ Sbjct: 82 VEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILVREG---VFNLN 138 Query: 201267 AGELDV 201284 A E D+ Sbjct: 139 AAEFDI 144 Score = 47.4 bits (111), Expect = 7e-04 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 4/164 (2%) Frame = +3 Query: 268833 LRLLRVFKGVVQCGGMAAAELELNIGISTISRHVKDLETRLGLVLCRRGRAGFTLTAEGQ 269012 L+ L F + G A ELN+ +S+ V LET LG L R LT GQ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 269013 TVYEETLRLLASMEAFRSRIDGIHDKMGGELHIAVFDKTATNPQARLGDAIRQFADEAPD 269192 + +LA + + + ++ L IA TAT L D I +F+ E P+ Sbjct: 69 QYADRVHAILADCVEATALV--MKEQTPHSLTIACASGTAT---LFLADRIAEFSAEHPE 123 Query: 269193 VALNL----HVASINEVERGIIDGSYQVGIIPAHRNSGSLVYAE 269312 V++ + V ++N E I G Y + +P +G+ + AE Sbjct: 124 VSVRILVREGVFNLNAAEFDI--GVYYIRDVPPPGIAGTAIVAE 165 >ref|NP_542568.1|putative methyltransferase-endonuclease Length = 1288 Score = 61.6 bits (148), Expect = 4e-08 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 6/109 (5%) Frame = -3 Query: 69766 FDAVLGNPPYVRIQNLPASTREAIRDRFSSCAKGNVDLYYAFCEKALDVAR----RVSFV 69599 +D V+GNPPYVRIQ+LP ++A+ ++ GN DLY F E+ LD + ++ ++ Sbjct: 693 YDYVVGNPPYVRIQHLP-DQQKAMLEQLYDSTTGNYDLYCPFYERGLDFLKDGNGKLGYI 751 Query: 69598 VPNSLLSNASAKALREKMA--PRLTRLIDFGTRRIFAPASAYACVFLVE 69458 PN + + +R + RL + DF +F A+ Y + + E Sbjct: 752 TPNQFMVTDYGEGIRRVLLRDSRLDEIYDFRDSGVFEDATNYPAIVIAE 800 >ref|NP_839905.1|putative methylase Length = 185 Score = 61.2 bits (147), Expect = 5e-08 Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 14/185 (7%) Frame = -3 Query: 11251 LSYLEFFAGSGLVAEGLRGLFRP-VWANDLSEKKAATYTANH---GARHFH-LGSIENVE 11087 + +L+ FAG G GL V ++ + +Y A H G R +H + ++ N E Sbjct: 1 MKFLDLFAGIGGFRLGLEQAGHECVGFCEIDKFARQSYKAIHNTEGEREYHDITTVSNEE 60 Query: 11086 GAVLP-VADMTWASFPCQDLSLAGKQAG-IHAARSGLVWQWLRALDEIPERPPVLVAENV 10913 L ++ FPCQ S+AGK+ G + R L ++ RA ++I +P L ENV Sbjct: 61 WRTLRGTVELICGGFPCQAFSIAGKRKGFLDETRGTLFFEIARAAEQI--KPRTLFLENV 118 Query: 10912 VGLVSAHGGEGYLQLHAALRERGYLVGAMKLDAARW-LPQSRPRIFVVAY------RESL 10754 GL+S G + + + L E GY L++ + +PQ+R R+F++ + RE Sbjct: 119 RGLLSHDKGRTFRTIISTLDELGYDAEWQILNSKNFGVPQNRERVFIIGHLRGERGREVF 178 Query: 10753 PLPAE 10739 P+ E Sbjct: 179 PITRE 183 Score = 43.1 bits (100), Expect = 0.013 Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Frame = -1 Query: 48783 LDLIAGGPPCQPFSSAGLGRAH-DDPR-DMWPEAIRSVRELAPRAFLFENVQGFLRPRFA 48610 ++LI GG PCQ FS AG + D+ R ++ E R+ ++ PR ENV+G L Sbjct: 68 VELICGGFPCQAFSIAGKRKGFLDETRGTLFFEIARAAEQIKPRTLFLENVRGLLSHDKG 127 Query: 48609 PYLSWIIESLRRPLCARRPGETHAEHXXXXXXXXXXXRYDVGVFAVNAADFGAAQQRRRV 48430 II +L YD +N+ +FG Q R RV Sbjct: 128 RTFRTIISTL------------------------DELGYDAEWQILNSKNFGVPQNRERV 163 Query: 48429 VVAG-IRREPG 48400 + G +R E G Sbjct: 164 FIIGHLRGERG 174 >ref|NP_878240.1|Mth Length = 312 Score = 61.2 bits (147), Expect = 5e-08 Identities = 79/321 (24%), Positives = 114/321 (35%), Gaps = 16/321 (4%) Frame = -1 Query: 48780 DLIAGGPPCQPFSSAGLGRAHDDPRDMWPEAIRSVRELAPRAFLFENVQGFLRPRFAPYL 48601 +L+ G PCQ FS G +A ++ E R++ ++ P+AF+ ENV G +R F L Sbjct: 63 ELLIGCYPCQGFSQGGARKADRKINTLYLEFARALSKIKPKAFIVENVSGMVRRNFEHLL 122 Query: 48600 SWIIESLRRPLCARRPGETHAEHXXXXXXXXXXXRYDVGVFAVNAADFGAAQQRRRVVVA 48421 Y V +NA+ +G +Q R+R+ + Sbjct: 123 K------------------------DQFKVFEEAGYTVSSQILNASHYGVSQDRKRIFIV 158 Query: 48420 GIRREPGAPERLLAAPTPTHSREALLWDQWIAGDYWRRHAIRAPKTGPXXXXXXXXXXAQ 48241 GIR++ G + P PTH GD Sbjct: 159 GIRKDYGITYKF---PKPTH------------GD-------------------------- 177 Query: 48240 RIRGIEPQLRPAVIPWRTTRDAIAGLGEPNGQNQHVFQAGAKVY--ANHTGSALDLPAKA 48067 + P+ T RDAI + P + A Y + + D +K Sbjct: 178 -----------GLTPYSTIRDAIGHM--PVWPVGEFYDADFHWYYLSRNRRQDWDQISKT 224 Query: 48066 LKAGAHGVP-----------GGENMLIGDDGTPRYFSVREAARLQGFHDAWQFEGPR-SE 47923 + A +P G + D R FS REAA LQGF D E R S Sbjct: 225 IVANPRHMPLHPISPTLEKLGPDKWQFTSDAPARRFSYREAAILQGFGDLIFPETERASI 284 Query: 47922 GMRQ--LGNAVPVQLSEALGR 47866 M+ +GNAVP L EA+ R Sbjct: 285 NMKYTVVGNAVPPPLFEAVAR 305 Score = 57.8 bits (138), Expect = 5e-07 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 2/163 (1%) Frame = -3 Query: 11242 LEFFAGSGLVAEG-LRGLFRPVWANDLSEKKAATYTANHGARHFHLGSIENVEGAVLPVA 11066 + F+G G G L F + AND+ Y NH + LG I ++ P A Sbjct: 5 VSLFSGCGGSDAGVLNAGFNVLMANDILPYARDVYLENHPETDYILGDISGLQS--FPSA 62 Query: 11065 DMTWASFPCQDLSLAGKQAGIHAARSGLVWQWLRALDEIPERPPVLVAENVVGLVSAHGG 10886 ++ +PCQ S G + + L ++ RAL +I +P + ENV G+V + Sbjct: 63 ELLIGCYPCQGFSQGGARKADRKINT-LYLEFARALSKI--KPKAFIVENVSGMVRRNFE 119 Query: 10885 EGYLQLHAALRERGYLVGAMKLDAARW-LPQSRPRIFVVAYRE 10760 E GY V + L+A+ + + Q R RIF+V R+ Sbjct: 120 HLLKDQFKVFEEAGYTVSSQILNASHYGVSQDRKRIFIVGIRK 162 >ref|NP_042036.1|DNA primase Length = 777 Score = 57.8 bits (138), Expect = 5e-07 Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%) Frame = -1 Query: 25194 SKEPGGGGFRYIERKG--------LWAVSFGARFERRTDKLVLSASDIDGRIWSVQTINA 25039 +K G G Y+ RKG L R LV+ D G + ++Q I+A Sbjct: 122 AKTRTGTGNAYLTRKGFPGRECRMLTGTHRAGGVSWRAGDLVVPLYDDSGELVNLQLISA 181 Query: 25038 EGDKFFCKDGRVAG-CMFWIGKPVDGQPITVVEGFATGASARMALGHAVAVAFFAVNLRP 24862 +G K K G+V G C G+ G+ + + EG+AT + G V VA +VNL Sbjct: 182 DGRKRTLKGGQVRGTCHTLEGQNQAGKRLWIAEGYATALTVHHLTGETVMVALSSVNLLS 241 Query: 24861 VAEAIRERFPSSPMAILADND 24799 +A R++ P+ + + AD D Sbjct: 242 LASLARQKHPACQIVLAADRD 262 >ref|NP_049632.1|Dda DNA helicase Length = 439 Score = 56.2 bits (134), Expect = 2e-06 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 8/167 (4%) Frame = +1 Query: 105775 ISGKPGAGKTTLLK-CVAPILEKDGRAVHYAAPTGKAAKRMRQSIERPTSTIHRMLGLG- 105948 I+G G GKTTL K + ++ G + AAPT A K + + + STIH +L + Sbjct: 30 INGPAGTGKTTLTKFIIEALISTGGTGIILAAPTHAAKKILSKLSGKEASTIHSILKINP 89 Query: 105949 ---RGGAKARPDDENPLKTASAVVIDEASMLDAKLTLAILRSIGPKTLLVLVGDPGQLPS 106119 + L ++ DE SM D KL +L +I P ++ +GD Q+ Sbjct: 90 VTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGIGDNKQIRP 149 Query: 106120 IRAGK---VLADLMDSNAFPTARLTNVVRQGAQSDIVKVARAIDSGE 106251 + G+ ++ F LT V R A I+ VA + +G+ Sbjct: 150 VEPGENTAYISPFFTHKDFYQCELTEVKRSNA--PIIDVATDVRNGK 194 Score = 45.8 bits (107), Expect = 0.002 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 3/178 (1%) Frame = +1 Query: 136759 VKALSDSGTVAIIKGAAGTGKTTVAKGIART-FELAGSNVFGTAISSGAAAILGKEAGIE 136935 +KA+ + I G AGTGKTT+ K I G+ + A + A IL K +G E Sbjct: 18 MKAIKEKKHHVTINGPAGTGKTTLTKFIIEALISTGGTGIILAAPTHAAKKILSKLSGKE 77 Query: 136936 SFTVADLLSRLERGEHKAQGTEPPKLP-LGDKSVLFVDESGMIDTRSMHKLMGYQKEIGF 137112 + T+ +L + E ++P L VL DE M D R + K++ Sbjct: 78 ASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYD-RKLFKILLSTIPPWC 136 Query: 137113 KMVWFGDTRQLAPVAAGNVQLTTEANYGHLNSASMSEITRQKEEWMRQ-TVLRSMNAP 137283 ++ GD +Q+ PV G N+A +S K+ + + T ++ NAP Sbjct: 137 TIIGIGDNKQIRPVEPGE------------NTAYISPFFTHKDFYQCELTEVKRSNAP 182 >ref|YP_006615.1|Gp35 Length = 1328 Score = 55.8 bits (133), Expect = 2e-06 Identities = 49/161 (30%), Positives = 65/161 (40%), Gaps = 11/161 (6%) Frame = -1 Query: 25074 DGRIWSVQTINAEGDKFFCK---DGRVAGCMFWIGKPVDGQPITVVEGFATGASARMALG 24904 DGRI Q I+ G KF G G F IG Q + VVEGFATGAS +A Sbjct: 233 DGRILGWQRIDQRGGKFQTSAITSGDFVGACFVIGDLKGAQNVAVVEGFATGASVWLATR 292 Query: 24903 -------HAVAVAFFAVNLRPVAEAIRERFPSSPMAILADNDRATEADXXXXXXXXXXXX 24745 AV VA A N+ V E + +P++ + DNDR + A+ Sbjct: 293 KDPKKRFDAVVVAVAANNMIHVVEQLVNMYPAAKITCALDNDRKSSAEGKGNTGLRTGYE 352 Query: 24744 XXXALN-IDWLXXXXXXXXXXXXTDWNDLMLAEGLSEVRAQ 24625 + + + +D+NDL GL EV Q Sbjct: 353 IMEKFSCVKCVYPVFEDDPELECSDFNDLHSLRGLKEVARQ 393 >ref|NP_665998.1|putative C5-cytosine methyltransferase Length = 283 Score = 54.3 bits (129), Expect = 6e-06 Identities = 45/137 (32%), Positives = 59/137 (43%), Gaps = 2/137 (1%) Frame = -1 Query: 48795 GLADLDLIAGGPPCQPFSSAGLGRAHDDPR-DMWPEAIRSVRELAPRAFLFENVQGFLRP 48619 G+ L ++GGPPCQ FS G R DDPR +++ E +R V + P F+ ENV G Sbjct: 105 GVGQLTAVSGGPPCQGFSHIG-KREEDDPRNELYLEMVRIVHQAKPVFFVMENVPG---- 159 Query: 48618 RFAPYLSWIIESLRRPLCARRPGETHAEHXXXXXXXXXXXRYDVGVFAVNAADFGAAQQR 48439 L GE E Y+V +AAD+G Q R Sbjct: 160 ----------------LATMHDGEAIME----VCENFEAGGYEVTWDKHDAADYGVPQHR 199 Query: 48438 RRVVVAGIRRE-PGAPE 48391 RV+V G R + G PE Sbjct: 200 ERVLVIGKRVDVMGMPE 216 Score = 46.2 bits (108), Expect = 0.002 Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 9/161 (5%) Frame = -3 Query: 11098 ENVEGAVLPVADMTWASF--PCQDLSLAGKQAGIHAARSGLVWQWLRALDEIPERPPVLV 10925 E +E A + V +T S PCQ S GK+ R+ L + +R + + +P V Sbjct: 97 EILEAAGIGVGQLTAVSGGPPCQGFSHIGKREE-DDPRNELYLEMVRIVHQA--KPVFFV 153 Query: 10924 AENVVGLVSAHGGEGYLQLHAALRERGYLVGAMKLDAARW-LPQSRPRIFVVAYR-ESLP 10751 ENV GL + H GE +++ GY V K DAA + +PQ R R+ V+ R + + Sbjct: 154 MENVPGLATMHDGEAIMEVCENFEAGGYEVTWDKHDAADYGVPQHRERVLVIGKRVDVMG 213 Query: 10750 LPAE-----LVNDGPGWAHDTALRRVRESLESASPAGSDGW 10643 +P E + PG R R L+ A D + Sbjct: 214 MPEEGNPQFHIGAKPGGIKHPEFFRERHDLKEPDQATFDAF 254 >ref|NP_150145.1|putative DNA methylase Length = 385 Score = 53.9 bits (128), Expect = 8e-06 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 6/168 (3%) Frame = -3 Query: 11251 LSYLEFFAGSGLVAEGLRGLFRP-VWANDLSEKKAATYTANHGAR-HFHLGSIENVEGAV 11078 + +L+ FAG G G+ + ++ + A+Y A H + L I V Sbjct: 1 MKFLDLFAGIGGFRIGMESAGHECIGFCEIDKFARASYKAIHDTKGEIELHDITTVSDDT 60 Query: 11077 LPV---ADMTWASFPCQDLSLAGKQAGIHAARSGLVWQWLRALDEIPERPPVLVAENVVG 10907 + D+ FPCQ S+AG + G R L ++ R + +P L ENV G Sbjct: 61 IRGIGHVDVICGGFPCQAFSIAGNRRGFEDTRGTLFFEIARFASIL--KPRYLFLENVKG 118 Query: 10906 LVSAHGGEGYLQLHAALRERGYLVGAMKLDAARW-LPQSRPRIFVVAY 10766 L++ G + + +AL E GY V L++ + +PQ+R R+F++ + Sbjct: 119 LLNHDRGNTFEVILSALDELGYDVEWQVLNSKNFGVPQNRERVFIIGH 166 Score = 48.9 bits (115), Expect = 2e-04 Identities = 38/127 (29%), Positives = 51/127 (40%), Gaps = 1/127 (0%) Frame = -1 Query: 48795 GLADLDLIAGGPPCQPFSSAGLGRAHDDPR-DMWPEAIRSVRELAPRAFLFENVQGFLRP 48619 G+ +D+I GG PCQ FS AG R +D R ++ E R L PR ENV+G L Sbjct: 63 GIGHVDVICGGFPCQAFSIAGNRRGFEDTRGTLFFEIARFASILKPRYLFLENVKGLLNH 122 Query: 48618 RFAPYLSWIIESLRRPLCARRPGETHAEHXXXXXXXXXXXRYDVGVFAVNAADFGAAQQR 48439 I+ +L YDV +N+ +FG Q R Sbjct: 123 DRGNTFEVILSAL------------------------DELGYDVEWQVLNSKNFGVPQNR 158 Query: 48438 RRVVVAG 48418 RV + G Sbjct: 159 ERVFIIG 165 >ref|NP_046932.1|gp37 Length = 1324 Score = 53.5 bits (127), Expect = 1e-05 Identities = 47/161 (29%), Positives = 65/161 (40%), Gaps = 11/161 (6%) Frame = -1 Query: 25074 DGRIWSVQTINAEGDKFFCK---DGRVAGCMFWIGKPVDGQPITVVEGFATGASARMALG 24904 DGRI Q I+ G KF +G G F IG Q I EGFATGAS +A Sbjct: 233 DGRIVGWQRIDLNGGKFQTSAITNGDFVGACFVIGDLQGAQKIATAEGFATGASIWLATR 292 Query: 24903 H-------AVAVAFFAVNLRPVAEAIRERFPSSPMAILADNDRATEADXXXXXXXXXXXX 24745 + AV +A A N+ V E + +P++ + DNDR + A+ Sbjct: 293 NDPKKRFDAVVIAVSANNMIHVVEQLVNMYPAAQITCALDNDRKSSAEGKGNTGLRTGFD 352 Query: 24744 XXXALN-IDWLXXXXXXXXXXXXTDWNDLMLAEGLSEVRAQ 24625 + + + +D+NDL GL EV Q Sbjct: 353 IMEKFSGVKCVYPTFEDDPELECSDFNDLHSLRGLKEVARQ 393 >ref|NP_064745.1|gp7 Length = 540 Score = 52.0 bits (123), Expect = 3e-05 Identities = 44/164 (26%), Positives = 74/164 (45%) Frame = +2 Query: 219821 ASTIGAAAKLARKRPPSPRTHSTSNGPTAARGCSNDAGSGCSRSQRGAINVVTSRPIAAV 220000 A+ GA+ A + T +T++ +A++ ++ + + S N TS AA Sbjct: 119 ATNAGASETAASASATASATSATNSATSASQAATSASAAAVSEG-----NAATSETNAAN 173 Query: 220001 ASTPKIRRAARFQLTIRRPASTPTMASGDASTTLCNNAKSSEGACSSDAAAGSRRVGLGA 220180 ++T A+ T AS ++++ +A+T+ N A S+ A +S AAA + A Sbjct: 174 SATSASGSAS----TATTQASAASVSATNAATSASNAATSATNAAASQAAAATSETNAAA 229 Query: 220181 SSSLSAPRKRSFANSGLTATTSAHSTKLIATNATAWASNSEGAA 220312 S S + A S A TSA + ATNA AS + +A Sbjct: 230 SESTVTTSATNAATSEANAATSASTATTQATNAATSASTASTSA 273 Score = 45.4 bits (106), Expect = 0.003 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 1/165 (0%) Frame = +2 Query: 219821 ASTIGAAAKLARKRPPSPRTHSTSNGPTAARGCSNDAGSGCSRSQRGAINVVTSRPIAAV 220000 A+T +AA ++ + T++ +N T+A G ++ A + S + A N TS AA Sbjct: 150 AATSASAAAVSEGNAATSETNA-ANSATSASGSASTATTQASAASVSATNAATSASNAAT 208 Query: 220001 ASTPKIRRAARFQLTIRRPASTPTMASGDASTTLCNNAKSSEGACSSDAA-AGSRRVGLG 220177 ++T AS A+ T NA +SE ++ A A + Sbjct: 209 SATN-------------------AAASQAAAATSETNAAASESTVTTSATNAATSEANAA 249 Query: 220178 ASSSLSAPRKRSFANSGLTATTSAHSTKLIATNATAWASNSEGAA 220312 S+S + + + A S TA+TSA + TNA + AS++ +A Sbjct: 250 TSASTATTQATNAATSASTASTSATNAATSETNAASSASSAASSA 294 Score = 39.3 bits (90), Expect = 0.19 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 1/160 (0%) Frame = +3 Query: 40803 SLSHSSSLMFAAAIETIWRASRSESARNAITSAI-SGLTANTRAVVTSGCALGSISGALD 40979 S S +++ AAA+ A+ +A N+ TSA S TA T+A S A + + A + Sbjct: 146 SASQAATSASAAAVSEGNAATSETNAANSATSASGSASTATTQASAASVSATNAATSASN 205 Query: 40980 NARAASAAHGSVSRASISPAQPALAPPFGRPLWQS*NATFARSIAKARIESTDAATRSPR 41159 A +A+ A S + A+ S A + +T S A +AAT + Sbjct: 206 AATSATNAAASQAAAATSETNAAAS-----------ESTVTTSATNAATSEANAATSAST 254 Query: 41160 WRARMASARPSALMINGGSAPNAFSGDTSGFSAIARASRS 41279 + +A SA + SA NA + +T+ S+ + A+ S Sbjct: 255 ATTQATNAATSASTAS-TSATNAATSETNAASSASSAASS 293 Score = 38.9 bits (89), Expect = 0.25 Identities = 62/250 (24%), Positives = 94/250 (37%), Gaps = 12/250 (4%) Frame = -2 Query: 162257 PRAMRADIEKKGNALIASRSWSVAG----GQIEXXXXXXXXXXSAFL*SKLGAQNTGLTS 162090 P AM+AD++ GN LI + + G +E +A ++ A+ + + Sbjct: 42 PNAMQADLDLNGNNLIGATGLLINGTDYLADVEAAKAAALVAQAAAELAENNAETAEVNA 101 Query: 162089 RTPEIAPEATALRIAR*WREAWLFSINVDSSAVATATCRIEGSRASRNTPSTSPEPARRS 161910 E A +A A A +SA A+AT S S + +TS A S Sbjct: 102 EASETAAGLSATAAATSATNAGASETAASASATASAT-SATNSATSASQAATSASAAAVS 160 Query: 161909 MVFGSP*SRGNARAIQSASPLGCSMRSTRKGSKSSANRAAMTLSAPARSWC*TSATIPAT 161730 + A + SAS + + + SA AA + S A S +A+ A Sbjct: 161 EGNAATSETNAANSATSASGSASTATTQASAASVSATNAATSASNAATSATNAAASQAAA 220 Query: 161729 PSPGMSRPASAA--------ACGAFAQLSCSARIAVAAGVWDRPSSSTQSRSAWPERT*S 161574 + + AS + A + A + SA A S+ST S SA T S Sbjct: 221 ATSETNAAASESTVTTSATNAATSEANAATSASTATTQATNAATSASTASTSATNAAT-S 279 Query: 161573 SMRAVSSANS 161544 A SSA+S Sbjct: 280 ETNAASSASS 289 Score = 38.5 bits (88), Expect = 0.33 Identities = 37/160 (23%), Positives = 71/160 (44%) Frame = +1 Query: 225982 SVRRIARSTT*AAYSNVVGAAKPSPTRTACSDGSLPSTANISRCSGPSDGRA*PAGTISS 226161 S A S + AA S AA S A S+ + ++A + S + A ++S+ Sbjct: 139 SATNSATSASQAATS--ASAAAVSEGNAATSETNAANSATSASGSASTATTQASAASVSA 196 Query: 226162 AHCARAVSVSDTAPSNSLSRPWCGFAPTTSTSACHADVSLASASATVPPVTDVSTIACST 226341 + A + S + T+ +N+ + A TS + A S + SAT ++ + ++ Sbjct: 197 TNAATSASNAATSATNAAASQ---AAAATSETNAAASESTVTTSATNAATSEANAATSAS 253 Query: 226342 ATPLSSNNAAMRASVACASRVISSRADVSSASTRGMSGST 226461 + NAA AS A S ++ ++ ++AS+ + S+ Sbjct: 254 TATTQATNAATSASTASTSATNAATSETNAASSASSAASS 293 >ref|NP_938228.1|putative structural protein Length = 138 Score = 52.0 bits (123), Expect = 3e-05 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 14/93 (15%) Frame = +2 Query: 29195 PLGVRNRNPGNL----RDNATGG----------FRLFDTFEDGIHSADANLLDYGVHHHI 29332 P G+RN NPGN+ R+N G F FDT +GI + LL+Y + Sbjct: 5 PRGIRNNNPGNIVWSARNNWQGQLPHNPKIEPRFARFDTAHNGIRALAKLLLNYRKVDGL 64 Query: 29333 NTLTGVINRWAPAGDGDNNPAIYAAAVSKATGI 29431 T+ +I RWAP+ + D YA AV++A G+ Sbjct: 65 RTVESLIARWAPSNENDTR--AYATAVARAMGV 95 >ref|NP_861705.1|Dda DNA helicase Length = 437 Score = 50.8 bits (120), Expect = 6e-05 Identities = 51/171 (29%), Positives = 74/171 (43%), Gaps = 12/171 (7%) Frame = +1 Query: 105775 ISGKPGAGKTTLLKCVAPILEKDGRA-VHYAAPTGKAAKRMRQSIERPTSTIHRMLGLGR 105951 I+G G GKTTL + + L G + + AAPT A K + + + STIH +L + Sbjct: 30 INGPAGTGKTTLTRFIVEALISSGESGIILAAPTHAAKKVLSKLAGQEASTIHSILKINP 89 Query: 105952 GG--------AKARPDDENPLKTASAVVIDEASMLDAKLTLAILRSIGPKTLLVLVGDPG 106107 K PD L ++ DEASM D L +L SI ++ +GD Sbjct: 90 TTYEENVLFEQKKVPD----LALCRVLLFDEASMCDRSLFKIMLASIPKWCTVIGIGDRC 145 Query: 106108 QLPSIRAGK---VLADLMDSNAFPTARLTNVVRQGAQSDIVKVARAIDSGE 106251 Q+ + G+ L+ F LT V R A I+ VA I +G+ Sbjct: 146 QIRPVDPGESTAYLSPFFTHKDFVQCDLTEVKRSNA--PIIDVATDIRNGK 194 Score = 48.1 bits (113), Expect = 4e-04 Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 2/137 (1%) Frame = +1 Query: 136759 VKALSDSGTVAIIKGAAGTGKTTVAKGIARTFELAG-SNVFGTAISSGAAAILGKEAGIE 136935 +KA+ + I G AGTGKTT+ + I +G S + A + A +L K AG E Sbjct: 18 MKAIKEKKHHVTINGPAGTGKTTLTRFIVEALISSGESGIILAAPTHAAKKVLSKLAGQE 77 Query: 136936 SFTVADLLSRLERGEHKAQGTEPPKLP-LGDKSVLFVDESGMIDTRSMHKLMGYQKEIGF 137112 + T+ +L + E K+P L VL DE+ M D RS+ K+M Sbjct: 78 ASTIHSILKINPTTYEENVLFEQKKVPDLALCRVLLFDEASMCD-RSLFKIMLASIPKWC 136 Query: 137113 KMVWFGDTRQLAPVAAG 137163 ++ GD Q+ PV G Sbjct: 137 TVIGIGDRCQIRPVDPG 153 >ref|NP_818053.1|gp80 Length = 252 Score = 50.1 bits (118), Expect = 1e-04 Identities = 49/164 (29%), Positives = 69/164 (42%), Gaps = 11/164 (6%) Frame = -3 Query: 11104 SIENVEGAVLPVADMTWASFPCQDLSLAGKQAGIHAARSGLVWQWLRALDEIPERPPVLV 10925 ++E E P D+ FPCQD+S AG + GI +S L L + I RP ++ Sbjct: 54 TVEWWESEERPRVDLICGGFPCQDISNAGARKGITGPKSSLWGGMLHTVRNI--RPRYVL 111 Query: 10924 AENVVGLVSAHGGEGYLQLHAALRERGYLVGAMKLDA-ARWLPQSRPRIFVVAYRESLPL 10748 ENV L+ G + A L E G+ L A A P +R R+F++AY + L Sbjct: 112 IENVAALLV----RGVDTVLADLHESGFNAEWSVLSACAMGAPHTRERLFILAYPNNQRL 167 Query: 10747 PA----------ELVNDGPGWAHDTALRRVRESLESASPAGSDG 10646 A E+ G G H A+ + S A A G Sbjct: 168 QASGKSRVRDDFEMAFRGVGTEHVHAVAQPDSSQRGAHWASEPG 211 Score = 43.5 bits (101), Expect = 0.010 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = -1 Query: 48783 LDLIAGGPPCQPFSSAGLGRAHDDPR-DMWPEAIRSVRELAPRAFLFENVQGFL 48625 +DLI GG PCQ S+AG + P+ +W + +VR + PR L ENV L Sbjct: 66 VDLICGGFPCQDISNAGARKGITGPKSSLWGGMLHTVRNIRPRYVLIENVAALL 119 >ref|NP_945098.1|gp67 Length = 433 Score = 49.3 bits (116), Expect = 2e-04 Identities = 34/81 (41%), Positives = 44/81 (54%), Gaps = 5/81 (6%) Frame = -3 Query: 11065 DMTWASFPCQDLSLAGKQAGIHAARSGLVWQWLRALDEIPERPPVLVAENVVGLVSAHGG 10886 D A FPCQDLS+AG++AG+ RSGL ++ D+ +LV ENV G++SA Sbjct: 80 DCVIAGFPCQDLSVAGRRAGLDGKRSGLFFRVADIADDCGAW--LLVLENVSGIISATAS 137 Query: 10885 -----EGYLQLHAALRERGYL 10838 EG L AA R G L Sbjct: 138 VVDETEGELAERAASRVVGEL 158 >ref|NP_817858.1|gp7 Length = 196 Score = 48.5 bits (114), Expect = 3e-04 Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 29/185 (15%) Frame = -3 Query: 11233 FAGSGLVAEGLRGLF--RPVWANDLSEKKAATYTANHGARHFHLGSIENVEGA----VLP 11072 F+GSG++ + R VW + +++ A A +LG + V + L Sbjct: 13 FSGSGMLDRAVEQATGGRVVWHCE-NDRAAKLVLAERWPGVPNLGDVRRVNWSRIRWSLG 71 Query: 11071 VADMTWASFPCQDLSLAGKQAGI-HAARSGLVWQWLRALDEIPERPPVLVAENVVGLV-- 10901 D+ FPC D+S AG+QAG+ +SGL +++RA+D + RP +V ENV L+ Sbjct: 72 PVDILCGGFPCTDISPAGRQAGLAPGTQSGLWVEFVRAIDTL--RPQTVVIENVRNLLHV 129 Query: 10900 -----SAHGGEGYLQLHAALRERGYLVGAMKLDA------ARW---------LPQSRPRI 10781 S G G Q A RG +GA+ D A W P R RI Sbjct: 130 RANIRSTLGRMGPDQRDMAGDPRG--IGAVLGDLADLGFDAEWEVVPASDAGAPHRRQRI 187 Query: 10780 FVVAY 10766 FVVA+ Sbjct: 188 FVVAH 192 Score = 45.8 bits (107), Expect = 0.002 Identities = 45/169 (26%), Positives = 66/169 (39%), Gaps = 7/169 (4%) Frame = -1 Query: 48894 GDVRAIDWTAARDXXXXXXXXXXXXXXXXLTDPGLADLDLIAGGPPCQPFSSAG--LGRA 48721 GDVR ++W+ R L +D++ GG PC S AG G A Sbjct: 56 GDVRRVNWSRIRW--------------------SLGPVDILCGGFPCTDISPAGRQAGLA 95 Query: 48720 HDDPRDMWPEAIRSVRELAPRAFLFENVQGFLRPRFAPYLSWIIESLRRPLCARRPGETH 48541 +W E +R++ L P+ + ENV+ L R ++R L P + Sbjct: 96 PGTQSGLWVEFVRAIDTLRPQTVVIENVRNLLHVR---------ANIRSTLGRMGPDQRD 146 Query: 48540 AEHXXXXXXXXXXXRYDVGVFA----VNAADFGAAQQRRRV-VVAGIRR 48409 D+G A V A+D GA +R+R+ VVA RR Sbjct: 147 MAGDPRGIGAVLGDLADLGFDAEWEVVPASDAGAPHRRQRIFVVAHARR 195 >ref|NP_049909.1|structural protein P5 Length = 160 Score = 47.0 bits (110), Expect = 0.001 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 15/118 (12%) Frame = +2 Query: 29201 GVRNRNPGNLRDNATGGFR--------LFDTFED------GIHSADANLLDYGVHHHINT 29338 G+RN NP N+++ + GG + L TFE+ GI + L Y V + + + Sbjct: 29 GLRNNNPLNIKEGSDGGAQWEGEHELDLDPTFEEFKTPVHGIRAGARILRTYAVKYGLES 88 Query: 29339 LTGVINRWAPAGDGDNNPAIYAAAVSKATGIGVDDVI-DLRDPAVRQHILAAMFDVES 29509 + G+I RWAP + +N+ Y V+ TGI + + D PAV ++AM D+E+ Sbjct: 89 IEGIIARWAP--EEENDTENYINFVANKTGIPRNQKLNDETYPAV----ISAMIDMEN 140 >ref|NP_944257.1|putative DnaC Length = 265 Score = 46.2 bits (108), Expect = 0.002 Identities = 53/216 (24%), Positives = 89/216 (41%), Gaps = 21/216 (9%) Frame = +3 Query: 130686 ELDRRQSRLIERRYQQSGLEEKLTLTEFDWSFNPK----LPRQACFQLHAL--------- 130826 E + ++R E R +Q +E +L + +F + + Q +AL Sbjct: 57 EQEELEARAREERVRQERIEARLNASGIPLAFRDRTFENFVAETDEQRYALDVARSFAEN 116 Query: 130827 ---KFVAAGENALIIGKPGTGKSHLAKAVAYQAVLQGHKVQYLETDDFFNRYAL-----S 130982 K + AG+ + G PGTGKSHLA A+ Q V++ YL+ R + Sbjct: 117 FWTKHLPAGDFLIFGGNPGTGKSHLALAI-QQYVMRHSTAMYLDAMALIRRVRATWRRDA 175 Query: 130983 PAAQQETRLRAIXXXXXXXXXXXXXSRTIPDDAGALLQTLIHQRYKLHRSVVVTSNRVVQ 131162 P +++E L + + DD A++ +I++RY+ R ++ +N Sbjct: 176 PQSEEEV-LHTLGFTVDLLAIDEIGVQRGTDDEQAIVFEIINRRYRDLRPTILMTNLNGA 234 Query: 131163 DWGAYLGDNTMSTTILDRLMHHCHLLEFDGRSYRLK 131270 +LG TM DRL +L F S+R K Sbjct: 235 GLKDFLGARTM-----DRLYERGTMLPFMWPSHRRK 265 >ref|NP_075300.1|gp33 Length = 267 Score = 45.1 bits (105), Expect = 0.003 Identities = 41/141 (29%), Positives = 56/141 (39%), Gaps = 14/141 (9%) Frame = +2 Query: 167366 GGNFLATINDGNAPAGAVGSNAFGYNGPVFAMAGGASVETGTGSFTVSVGNYGGQTIGAS 167545 GG A ++GN A GS F +GGA+ GT S G GG T + Sbjct: 121 GGARAAGSSNGNNGAPG-GSTVFSSGSVSLTASGGAAGVKGTSSSASGSGGAGGTTSISG 179 Query: 167546 VFYSGAT----------VNAGDISVTGVGLPRSMSNSVTSTGITVAGGTNGVATLTA--- 167686 V +G T ++G G G V S + +GG+NG ++ A Sbjct: 180 VSATGYTGGKGGNGGSSPSSGQSRTDGSGAGGGGGGGVRSNDNSFSGGSNGTSSGPAGNG 239 Query: 167687 -TGPGGIVLTGSGNPTNGGDG 167746 G G + TG N +GGDG Sbjct: 240 GRGTDGSINTGGSNAGSGGDG 260 >ref|NP_932377.1|DNA helicase Length = 439 Score = 45.1 bits (105), Expect = 0.003 Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 12/171 (7%) Frame = +1 Query: 105775 ISGKPGAGKTTLLKCVAPILEKDG-RAVHYAAPTGKAAKRMRQSIERPTSTIHRMLGLGR 105951 I G G GKTTL K + L + G + + AAPT +A K + + R TI +L + Sbjct: 30 IRGPAGTGKTTLTKFLLDRLFQTGQQGIVLAAPTHQAKKELSKHALRKAYTIQSLLKINP 89 Query: 105952 G--------GAKARPDDENPLKTASAVVIDEASMLDAKLTLAILRSIGPKTLLVLVGDPG 106107 K PD ++ DE S KL +++++ +++ +GD Sbjct: 90 STLEENQIFEQKGTPD----FSKIRVLICDEVSFYTRKLFNILMKTVPSHCVIIGIGDKA 145 Query: 106108 QLPSIRAGK---VLADLMDSNAFPTARLTNVVRQGAQSDIVKVARAIDSGE 106251 Q+ + L+ + F L V R Q I++VA I +G+ Sbjct: 146 QIRGVSEDNETHELSPFFTDDRFSQVELDEVKRH--QGPIIEVATDIRNGK 194 >ref|NP_813725.1|gp9.1 Length = 166 Score = 44.7 bits (104), Expect = 0.005 Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Frame = -3 Query: 11098 ENVEGAVLPVADMTWASFPCQDLSLAGKQAGIHAARSGLVWQWLRALDEIP-ERPPVLVA 10922 E++ G V D A FPCQD+S AGK+AGI RSG+ W D I RP + Sbjct: 58 EDLRGEV----DTITAGFPCQDISNAGKRAGIQGERSGI---WFNIADAIRIIRPRYVYL 110 Query: 10921 ENVVGLVSAHGGEGYLQLHAALRERGY 10841 EN V A G + ++L E GY Sbjct: 111 EN----VGAIRNRGQAAVLSSLSEIGY 133 >ref|NP_958506.1|putative integrase Length = 391 Score = 43.9 bits (102), Expect = 0.008 Identities = 81/366 (22%), Positives = 141/366 (38%), Gaps = 17/366 (4%) Frame = +2 Query: 6629 RNFKSIAEARDKARSMAAIMESTKRNPREIEREKDAGQMSLGEAFSLYREALVKRPKPAT 6808 R FKS AEA M+ I P ++K Q+ + E L+ E + K +T Sbjct: 41 RGFKSYAEAEAVFNKMSQI------KPDNFVKQK---QIKVAELRELWFENYKTQVKEST 91 Query: 6809 ANTLDTLDKAIAKFKDWAKTRIVDLRPEAILHRFDEIAVKTRTSAEQTFRWASAAINHAI 6988 AN ++ D ++ F + T AE +WA + Sbjct: 92 ANK---------------NKQVFD---NHVIPAFGNQYIDKITVAELQ-KWADRKAKQIV 132 Query: 6989 EWERAMAQSANRPALLTYNPFTILGVQKRYRSRAQLEAEYKKKGVRNP-------LSPRD 7147 ++ R A+ +N G++ Y S L+ K P + +D Sbjct: 133 KY---------RDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTQD 183 Query: 7148 TLGRFFDALLGRRDENRTGCDYLIVTTLWGTRKSEAAALIWRDL-LTEEESHVLPWVC-- 7318 L +F + +D Y + + G RKSEA AL W D+ LT V + Sbjct: 184 ELNQFLEVA---KDYGLVPYTYFKLLSATGLRKSEALALTWSDINLTAGTLSVNKTLAYG 240 Query: 7319 LETRRVFFPDTKNRSQHELPIADGVFKLL---RMRRDLQLLEEFETPAMPNKRLNPRRRY 7489 L + + P +S+ LPI+DG+ ++L + ++ + E F T R++ ++ Sbjct: 241 LNGKTIIQPPKSPKSKRILPISDGLKEVLIDYKRKQKIISKELFHTNKGTYLRISKPDQW 300 Query: 7490 FVFPARSKFSKTGHYSDAKSLLGYICQD--AEIKRLTMHDLRRTLGR--VAEERTSYAAV 7657 +S ++K H A+ Y ++ +++ +T+H R T +AE V Sbjct: 301 L----KSIYAK-DHEEKAEYAKKYNLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTV 355 Query: 7658 KRLLNH 7675 + LL H Sbjct: 356 QMLLGH 361 >ref|NP_817477.1|gp27 Length = 946 Score = 43.5 bits (101), Expect = 0.010 Identities = 36/130 (27%), Positives = 51/130 (39%) Frame = +2 Query: 167363 NGGNFLATINDGNAPAGAVGSNAFGYNGPVFAMAGGASVETGTGSFTVSVGNYGGQTIGA 167542 + G+ + T N G +G S++ G G GG + G T S+ + GA Sbjct: 813 SSGSVVITANGGGHGSGGTNSSSSGTRG-----LGGTATAVGITGVTASLLS------GA 861 Query: 167543 SVFYSGATVNAGDISVTGVGLPRSMSNSVTSTGITVAGGTNGVATLTATGPGGIVLTGSG 167722 + G++ +G G G S T GG NG + A GG GSG Sbjct: 862 NGGNGGSSPTSGGSKTDGAGAGGRGGGGKKSNDKTFNGGNNGTSDGPAGNGGGGSSGGSG 921 Query: 167723 NPTNGGDGID 167752 T+ GDG D Sbjct: 922 TGTDAGDGGD 931 >ref|NP_818239.1|gp188 Length = 318 Score = 43.5 bits (101), Expect = 0.010 Identities = 28/76 (36%), Positives = 38/76 (50%) Frame = -2 Query: 267962 GVVIPPKGYLKRLRDICTAHDILLIFDEVITGFGRSGAMTGADAFGVTPDIMNFAKQVTN 267783 G ++ P+ L + D T ++ DE TGFGR G + G A+G TPD + F Sbjct: 117 GRLVAPEVVLDEV-DRATKSGRTVVADESATGFGRLGRIWGHQAYGFTPDAIIFGGPAGG 175 Query: 267782 GTQPLGGVIATKEIYD 267735 G LGGVI E+ D Sbjct: 176 GL-TLGGVIGPAELLD 190 >ref|NP_892081.1|relication protein RepA Length = 1330 Score = 43.5 bits (101), Expect = 0.010 Identities = 50/199 (25%), Positives = 73/199 (36%), Gaps = 17/199 (8%) Frame = -1 Query: 25161 IERKGLWAVSFGARFERRTDKLVLSASDIDGR----IWSVQTINAEGDKFFCKD------ 25012 + R +W R + + + S IDGR I Q I + G K + Sbjct: 203 VRRVSVWDRGHNGDKLTRRECMAIPLSHIDGRFNGKIIGWQRIFSNGAKIQTRAVDMGAG 262 Query: 25011 ----GRVAGCMFWIGKPVDGQPITVVEGFATGASARMALG---HAVAVAFFAVNLRPVAE 24853 +G IGK + + VVEGFATGAS MA AV VA A N+ V + Sbjct: 263 PDAAAPFSGSCHIIGKLRGAERVCVVEGFATGASVYMAAKKRFDAVIVAVAANNVIKVVD 322 Query: 24852 AIRERFPSSPMAILADNDRATEADXXXXXXXXXXXXXXXALNIDWLXXXXXXXXXXXXTD 24673 + +P + DND+ + A+ +D Sbjct: 323 QLNSLYPGIEIWCALDNDQKSAAEGKGNTGIKTGIDVIKKFPNVKCTRPLFNNDEKELSD 382 Query: 24672 WNDLMLAEGLSEVRAQCAA 24616 +NDL A+G++E Q A Sbjct: 383 FNDLFQAKGITETNRQLFA 401 >ref|NP_046954.1|gp58 Length = 331 Score = 43.5 bits (101), Expect = 0.010 Identities = 20/41 (48%), Positives = 23/41 (56%) Frame = -1 Query: 48759 PCQPFSSAGLGRAHDDPRDMWPEAIRSVRELAPRAFLFENV 48637 PCQP+SSAG G DD R +WP R V+E P E V Sbjct: 79 PCQPWSSAGKGGKFDDERHLWPVFFRLVKECRPPVIFGEQV 119 Score = 40.0 bits (92), Expect = 0.11 Identities = 45/144 (31%), Positives = 61/144 (42%), Gaps = 3/144 (2%) Frame = -3 Query: 11074 PVADMTW-ASFPCQDLSLAGKQAGIHAARSGLVWQ-WLRALDEIPERPPVLVAENVVGLV 10901 P + W AS PCQ S AGK R +W + R + E RPPV+ E V Sbjct: 68 PDSRSVWTASLPCQPWSSAGKGGKFDDERH--LWPVFFRLVKEC--RPPVIFGEQV---S 120 Query: 10900 SAHGGEGYLQLHAALRERGYLVGAMKLDAAR-WLPQSRPRIFVVAYRESLPLPAELVNDG 10724 S G E + + L GY V A+ AA P R RIF +AY S + N Sbjct: 121 SKDGLEWFSAVQTDLENAGYAVAALDTCAASVGAPHIRQRIFWMAYDYS----QQYQNGD 176 Query: 10723 PGWAHDTALRRVRESLESASPAGS 10652 G + +T + ++E A + S Sbjct: 177 KGCSENTGQKSSGTTVELAGCSSS 200 >ref|YP_003925.1|Dam methylase Length = 237 Score = 43.1 bits (100), Expect = 0.013 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 16/136 (11%) Frame = -3 Query: 27949 DEWLTPPEILAAL----GPFELDPCAPIKRPWPTAALHFTTRSDGLARAWG-DRRVWLNP 27785 D W TP E++A L G ++LD A + ++ ++ L R WG ++ VWLNP Sbjct: 57 DLWSTPREVIAYLEGRYGKYDLDAAASEENK--VCEKFYSQETNCLKRWWGKNKHVWLNP 114 Query: 27784 PFGQEAAKWIRKA---ALHGNAI-ALIPARTETAMF-------HDWVWGQADAVLFLRGR 27638 P+ + +++KA H N I L+PA TA F + +W +AD + G Sbjct: 115 PYSRPDI-FVKKAIEQMEHNNQIDMLLPADNSTAWFTEARQNAAEIIWIEADLTEDIDGN 173 Query: 27637 PHFHFVDGSRAPFNSG 27590 + R F SG Sbjct: 174 ---EYARSGRLAFISG 186 >ref|NP_817998.1|gp25 Length = 941 Score = 42.4 bits (98), Expect = 0.023 Identities = 36/128 (28%), Positives = 47/128 (36%) Frame = +2 Query: 167369 GNFLATINDGNAPAGAVGSNAFGYNGPVFAMAGGASVETGTGSFTVSVGNYGGQTIGASV 167548 G T N G S++ G G GG +V TG + S GN G Sbjct: 813 GGVSLTANGGQGGKKGTNSSSSGARG-----LGGTAVITGLDATGFSGGNGGN------- 860 Query: 167549 FYSGATVNAGDISVTGVGLPRSMSNSVTSTGITVAGGTNGVATLTATGPGGIVLTGSGNP 167728 G++ G G G S T++GG NG + A G GSG+ Sbjct: 861 --GGSSPTNGQSRTNGAGAGGKGGGGKLSNDNTISGGNNGTSDGPAGNGGFGSAGGSGDG 918 Query: 167729 TNGGDGID 167752 +NGG G D Sbjct: 919 SNGGTGTD 926 >ref|NP_944253.1|hypothetical protein; similar to DNA methyltransferase amino terminus Length = 205 Score = 42.0 bits (97), Expect = 0.030 Identities = 45/138 (32%), Positives = 59/138 (42%), Gaps = 13/138 (9%) Frame = -1 Query: 48780 DLIAGGPPCQPFSSAGLGRAHDDPRDMWP-------EAIRSVREL---APRAFLFENVQG 48631 D++ GG PCQ FS AGL + D R +AI VR L AP ++ENV G Sbjct: 67 DVLVGGTPCQAFSLAGLRESLSDERGNLTLKFVELIDAIDHVRRLDGAAPAVVVWENVPG 126 Query: 48630 FLRPR---FAPYLSWIIESLRRPLCARRPGETHAEHXXXXXXXXXXXRYDVGVFAVNAAD 48460 L + F +L+ + PL A PG A V ++A Sbjct: 127 VLSTKDNAFGCFLAGLAGE-DEPLVA--PGGRWANAGCVYGPQRA-----VAWRTLDAQY 178 Query: 48459 FGAAQQRRRVVVAGIRRE 48406 FG AQ+RRRV V R+ Sbjct: 179 FGVAQRRRRVFVVASGRD 196 Score = 41.2 bits (95), Expect = 0.050 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 11/109 (10%) Frame = -3 Query: 11191 FRPVWANDLSEKKAATYTANHGARHFHLGSIENVEGAVLP----VADMTWASFPCQDLSL 11024 ++P W ++ EK + A+H +LG + + AVL V D+ PCQ SL Sbjct: 22 WKPAWFAEI-EKFPSAVLAHHYPDVPNLGDMTKITRAVLAREVEVPDVLVGGTPCQAFSL 80 Query: 11023 AGKQAGIHAARSGLVWQWLRALDEIPE-------RPPVLVAENVVGLVS 10898 AG + + R L +++ +D I P V+V ENV G++S Sbjct: 81 AGLRESLSDERGNLTLKFVELIDAIDHVRRLDGAAPAVVVWENVPGVLS 129 >ref|YP_006628.1|Gp48 Length = 95 Score = 41.6 bits (96), Expect = 0.039 Identities = 19/56 (33%), Positives = 33/56 (58%) Frame = +3 Query: 202059 ILVGFRKAAGLTQAQLAARLGVTQQSYAQLEANPSAVSMERLFKVLNVLGVRVTLE 202226 +L R+ AGL+++ LA R+G+T + ++LE NP SM+ L K G + ++ Sbjct: 37 MLYEMREKAGLSKSALAERMGITPSAISRLEGNPLGASMKTLNKYAQACGASINIQ 92 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 41.2 bits (95), Expect = 0.050 Identities = 49/158 (31%), Positives = 67/158 (42%), Gaps = 8/158 (5%) Frame = -2 Query: 41192 RRPRAGHPRSPTRAARSGVRGFDASLRDRPRKRGVLRLP*RAAERGGESRLRRADGGPAH 41013 RR G + AAR GV+G + +R V R + A+ GG R RR D P Sbjct: 369 RRGGPGGAGADQPAARRGVQG-------QAGRRTVERRGLQGADAGG-IRARRDDQEPVR 420 Query: 41012 AAVRRRSGPRIVERSRD*SERATARDDGARVGRQPGDRRRDRISRALAARCSPDRL--DR 40839 RRR+G +R R+ +V R G R+ R+ + ARC+ RL D Sbjct: 421 RLPRRRAGVCRADRRRE-----------GQVRRLRGP-RQGRVGQGGRARCAGPRLRFDH 468 Query: 40838 SGKHQRRRVAKRIAADGDSRSA------IDGPGRLAAH 40743 SG ++ R + AD D A + G GRL H Sbjct: 469 SGVGEQGRCQGQGRADQDGGGAHQGVEVLGGRGRLQGH 506 >ref|NP_040602.1|Tail fiber protein Length = 401 Score = 41.2 bits (95), Expect = 0.050 Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 3/171 (1%) Frame = +3 Query: 40833 AAAIETIWRASRSESARNAI-TSAISGLTANTRAVVTSGCALGSISGALDNAR--AASAA 41003 A A E A+ +ES++NA TSA + T+ T A + A S S A A A SA Sbjct: 178 AKATEAEKSAAAAESSKNAAATSAGAAKTSETNAAASQQSAATSASTAATKASEAATSAR 237 Query: 41004 HGSVSRASISPAQPALAPPFGRPLWQS*NATFARSIAKARIESTDAATRSPRWRARMASA 41183 S+ + ++ + GR + +AT A + A+A S A S R ASA Sbjct: 238 DAVASKEAAKSSETNASSSAGRA---ASSATAAENSARAAKTSETNARSSETAAERSASA 294 Query: 41184 RPSALMINGGSAPNAFSGDTSGFSAIARASRSVRCCGMSQSHRSTTARASE 41336 A GSA A + T + AS+S + +A+ +E Sbjct: 295 AADAKTAAAGSASTASTKATEAAGSAVSASQSKSAAEAAAIRAKNSAKRAE 345 Score = 38.9 bits (89), Expect = 0.25 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 14/173 (8%) Frame = +2 Query: 219836 AAAKLARKRPPSPRTHSTSNGPTAARGCSNDAGSGCSRSQRGAINVVTSRPIAAVASTPK 220015 A+AK + S+ N + G + + + + SQ+ A ++ A + Sbjct: 176 ASAKATEAEKSAAAAESSKNAAATSAGAAKTSETNAAASQQSAATSASTAATKASEAATS 235 Query: 220016 IRRAARFQLTIR-----------RPASTPTMA--SGDASTTLCNNAKSSEGACS-SDAAA 220153 R A + + R AS+ T A S A+ T NA+SSE A S +AA Sbjct: 236 ARDAVASKEAAKSSETNASSSAGRAASSATAAENSARAAKTSETNARSSETAAERSASAA 295 Query: 220154 GSRRVGLGASSSLSAPRKRSFANSGLTATTSAHSTKLIATNATAWASNSEGAA 220312 + S+S ++ + A S ++A+ S + + A A A +E A Sbjct: 296 ADAKTAAAGSASTASTKATEAAGSAVSASQSKSAAEAAAIRAKNSAKRAEDIA 348 >ref|YP_024843.1|Pas57 Length = 305 Score = 41.2 bits (95), Expect = 0.050 Identities = 26/92 (28%), Positives = 41/92 (44%) Frame = +2 Query: 167447 PVFAMAGGASVETGTGSFTVSVGNYGGQTIGASVFYSGATVNAGDISVTGVGLPRSMSNS 167626 P + + AS T + S + S + AS S + ++ S TG P + +++ Sbjct: 191 PSTSTSASASAST-SASASASTSASASTSASASASTSASASSSASPSTTGSASPSTTTST 249 Query: 167627 VTSTGITVAGGTNGVATLTATGPGGIVLTGSG 167722 + GIT G + L TGPGGIV+ G Sbjct: 250 TAAPGITTTPVAGGGSDLPVTGPGGIVMLAGG 281 >ref|NP_542284.1|unknown Length = 434 Score = 40.4 bits (93), Expect = 0.086 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 10/107 (9%) Frame = -2 Query: 207524 GRALDVRAEALEHLDVRVDFAHAERAALHVVFEPRDAEAREQRRNQHDRRAHRLRQPVDG 207345 G AL V LE + R+ H ++A HV DAE E + RRA RLR+P+ Sbjct: 17 GDALVVITIGLEEVAYRLG-CHDLKSACHVALVGHDAEPGEPLLTKSCRRAERLREPI-- 73 Query: 207344 RIERRVAV----------VQLEDARREVDRHVAAERAEDVEDLAHVG 207234 + R+A+ V+ DARR++D + RA + D A +G Sbjct: 74 -LVLRLALQFPRRRSEPKVRHADARRQIDTQIVPRRAVE-HDAAELG 118 >ref|YP_024953.1|putative methyl transferase protein Length = 343 Score = 40.4 bits (93), Expect = 0.086 Identities = 20/50 (40%), Positives = 24/50 (48%) Frame = -1 Query: 48786 DLDLIAGGPPCQPFSSAGLGRAHDDPRDMWPEAIRSVRELAPRAFLFENV 48637 D + G PCQPFS+AG G DD R +WP + E P E V Sbjct: 71 DRPVWTGSCPCQPFSAAGKGGGFDDERHLWPHWHWLIAERRPAVVFGEQV 120 >ref|NP_943810.1|gp32 Length = 448 Score = 40.0 bits (92), Expect = 0.11 Identities = 37/112 (33%), Positives = 45/112 (40%), Gaps = 1/112 (0%) Frame = +2 Query: 167444 GPVFAMAGGASVETGTGSFTVSVGNYGGQTIGASVFYSGATV-NAGDISVTGVGLPRSMS 167620 GP F++ GA E T T N GG TI F SG+ V AG S G G+ Sbjct: 107 GPTFSLQIGAGGEQSTSDTT---RNNGGPTI----FSSGSIVLTAGGGSANG-GVASQSG 158 Query: 167621 NSVTSTGITVAGGTNGVATLTATGPGGIVLTGSGNPTNGGDGIDLQTGTAAG 167776 AGG N A G G+ + SGNP N + D + AG Sbjct: 159 QWYVPMANGTAGGVNNTMGGAAGGAEGVSYSHSGNPQNDNEKWDALSADPAG 210 >ref|NP_891650.1|distal long tail fiber assembly catalyst Length = 258 Score = 40.0 bits (92), Expect = 0.11 Identities = 47/139 (33%), Positives = 56/139 (40%), Gaps = 3/139 (2%) Frame = +2 Query: 167363 NGGNFLATINDGNAPAGAVGSNAFGYNGPVFAMAGGASVETGTGSFTVSVGNYGGQTIGA 167542 NGG+ A GNA A+G+ N A+AGG G + G GG+ GA Sbjct: 118 NGGSNAAGAAGGNAINNAIGTRLRITNNG--AIAGGGGGGGGGNRGRLVFGGGGGRPFGA 175 Query: 167543 SVFYS--GATVNAGDISVTGVGLPRSMSNSVTSTGITVAGGTNGVATLTATGPGGIVLT- 167713 S G+ AG IS G G S S + G AGG G A GG T Sbjct: 176 GGSSSNMGSGATAGSISAPGKGSVGEGSLSAYTGG---AGGNVGAA-------GGRCNTQ 225 Query: 167714 GSGNPTNGGDGIDLQTGTA 167770 G+G NGG TG A Sbjct: 226 GNGTEYNGGAAGKAVTGNA 244 >ref|NP_848249.1|cytosine methylase Length = 389 Score = 40.0 bits (92), Expect = 0.11 Identities = 19/50 (38%), Positives = 24/50 (48%) Frame = -1 Query: 48786 DLDLIAGGPPCQPFSSAGLGRAHDDPRDMWPEAIRSVRELAPRAFLFENV 48637 D + G PCQPFS+AG G D R +WP + E P+ E V Sbjct: 72 DKTVWTGSCPCQPFSAAGKGDGFADERHLWPHFFHLISERRPQHVFGEQV 121 >ref|NP_817363.1|gp25 Length = 320 Score = 39.7 bits (91), Expect = 0.15 Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 10/147 (6%) Frame = +2 Query: 167366 GGNFLATINDGNAPAGAVGSNAFGYNGPVFAMAGGASVETGTGSFTVS-VGNYG-----G 167527 G F ++ N G G+ F PV +M SV G G V+ G G G Sbjct: 79 GRRFTSSSNRSGGGGGGGGAKVFRTFVPVASMGSTYSVTRGLGGAAVTDTGASGPNGKPG 138 Query: 167528 QTIGASVFYSGATVNAGDISVTGVGLPRSMSNSVTSTGITVAGGT---NGVATLTATGPG 167698 GAS F SG+ + G G +++G +GGT +G+++ TA G Sbjct: 139 NAGGASTFSSGSIQLIANGGGGGGG-------GTSTSGSPGSGGTAFVSGISSTTANGSA 191 Query: 167699 GIVLTGSGN-PTNGGDGIDLQTGTAAG 167776 G G+G+ G G+D +G AAG Sbjct: 192 G----GAGDYNAAGAPGVDNTSGGAAG 214 >ref|NP_695118.1|putative tail protein Length = 1517 Score = 38.9 bits (89), Expect = 0.25 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 7/141 (4%) Frame = -1 Query: 266697 SERTPSSTLRMAELALEAGLPPGVLNVVNGDKE-------AVDTILTDARVKAVSFVGST 266539 ++ SS+ RM ++ +AG G N+ NG K AVD+++ AR A+ VG+ Sbjct: 1283 AQSVQSSSQRMIQMGRQAGTQTGQ-NIANGIKSSVGAVSSAVDSLVNAARAHAMGGVGAM 1341 Query: 266538 PIAEYIYSTGCANGKRVQALGGAKNFAVVMPDADIDNAVNALMGAAYGSCGERCMAIPLV 266359 I + G ANG + +LG + A NAL+ A + + M Sbjct: 1342 QIVGAMIGKGLANG-MIASLGA------------VTAAANALVAQAERAAQAKAMIHSPS 1388 Query: 266358 VAIGDETGDRIVAGLKAEIEK 266296 DE G I G+ I++ Sbjct: 1389 RLFRDEVGIYIGQGMAVGIDR 1409 >ref|NP_945304.1|structural phage protein Length = 162 Score = 38.9 bits (89), Expect = 0.25 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 2/108 (1%) Frame = +2 Query: 166559 LHGAGSMPIGPNEQVSMSAAGPKATVPAMAGSFNAMLSGPNTTFELANSALSGNQLSIAT 166738 +H + P + + P++ + S N ++ N T E++N L + Sbjct: 28 VHSGAGLKKVPVSTLKRTFTTPQSAISVATSSSNGIVRPDNQTTEVSNGVLKAKTATSGQ 87 Query: 166739 DGALNIVNSTVSAGSK--LALTGSALTISGSKLTSGANSLVELGGGQH 166876 G + NST++ S L + SAL I + AN L+ G QH Sbjct: 88 AGVVRPDNSTITIDSSGVLRVNRSALGIPSTPSEVVANKLINQNGNQH 135 >ref|NP_510917.1|similar to Escherichia coli DnaC Length = 259 Score = 38.5 bits (88), Expect = 0.33 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Frame = +3 Query: 130677 LQDELDRRQSRLIERRYQQSGLEEKLTLTEFDWSFNPKLPRQACFQLHALKFVAA----- 130841 + +E R + R I + QS + L + ++ P+ +Q + A+++V Sbjct: 59 IYEEYKRNKQRKINNIFNQSNVNPSLRDATVN-NYKPQNEKQVHAKQSAIEYVQGFSTKE 117 Query: 130842 GENALIIGKPGTGKSHLAKAVAYQAVLQGHKVQYLETDDFFNR 130970 ++ + G GTGKSHLA A+A +GH V ++ +R Sbjct: 118 PKSLIFQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDR 160 >ref|NP_046944.1|gp48 Length = 95 Score = 38.5 bits (88), Expect = 0.33 Identities = 18/55 (32%), Positives = 32/55 (58%) Frame = +3 Query: 202059 ILVGFRKAAGLTQAQLAARLGVTQQSYAQLEANPSAVSMERLFKVLNVLGVRVTL 202223 +L R+ AGLT++ LA R+G+ + ++LE+NP SM+ L + G + + Sbjct: 37 MLYEMREKAGLTKSALAERMGLQPSAISRLESNPLGASMKTLSRYAKACGASIDI 91 >ref|YP_024980.1|major tail subunit Length = 743 Score = 38.1 bits (87), Expect = 0.43 Identities = 57/230 (24%), Positives = 77/230 (33%) Frame = +2 Query: 167396 GNAPAGAVGSNAFGYNGPVFAMAGGASVETGTGSFTVSVGNYGGQTIGASVFYSGATVNA 167575 G A + SNA G + GG + G+ +GG G + SGA + Sbjct: 530 GAALVSVLSSNAIGGQTATIVIGGGGAGAPNVGT------TFGGN--GGNTSVSGAGIIG 581 Query: 167576 GDISVTGVGLPRSMSNSVTSTGITVAGGTNGVATLTATGPGGIVLTGSGNPTNGGDGIDL 167755 +S TG RS S +G GG G + G G V + GN NGG G Sbjct: 582 --LSWTGGKGGRSGYRS-DGSGNGAFGGAGGNNSANTGGGAGGVSSNGGNGVNGGGG--- 635 Query: 167756 QTGTAAGALSNAPAVQXXXXXXXXXXXXXXXXXXXXXXVAIGSNGVSNTVQAGGDAQITG 167935 G +N ++ + G G S DA G Sbjct: 636 -----GGGSNNDLVLRRGGNGGGSNGGIGGQGVGTTDGPSGGGGGNSAVWWDNADAGRGG 690 Query: 167936 SNPTGVGVELLGGSVYAAGNLTVSGTGAGGMTNAMLQQNSASGQGVFANQ 168085 + TG GG +A GN G G GG+ + + SG V Q Sbjct: 691 NGVTGNSGNQTGG--HATGNGNGGGGGGGGVPDFGGAGGNGSGGKVIIRQ 738 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 38.1 bits (87), Expect = 0.43 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Frame = +3 Query: 130677 LQDELDRRQSRLIERRYQQSGLEEKLTLTEFDWSFNPKLPRQACFQLHALKFVAA----- 130841 + +E R + R I + QS + L ++ P+ +Q + A+++V Sbjct: 59 IYEEYKRNKQRKINNIFNQSNVNPSLRDATVK-NYKPQNEKQVHAKQTAIEYVQGFSTKE 117 Query: 130842 GENALIIGKPGTGKSHLAKAVAYQAVLQGHKVQYLETDDFFNR 130970 ++ ++ G GTGKSHLA A+A +GH V ++ +R Sbjct: 118 PKSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDR 160 >ref|NP_803371.1|dnaC Length = 259 Score = 38.1 bits (87), Expect = 0.43 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Frame = +3 Query: 130677 LQDELDRRQSRLIERRYQQSGLEEKLTLTEFDWSFNPKLPRQACFQLHALKFVAA----- 130841 + +E R + R I + QS + L ++ P+ +Q + A+++V Sbjct: 59 IYEEYKRNKQRKINNIFNQSNVNPSLRDATVK-NYKPQNEKQVHAKQTAIEYVQGFSTKE 117 Query: 130842 GENALIIGKPGTGKSHLAKAVAYQAVLQGHKVQYLETDDFFNR 130970 ++ ++ G GTGKSHLA A+A +GH V ++ +R Sbjct: 118 PKSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDR 160 >ref|NP_958645.1|77ORF013 Length = 259 Score = 38.1 bits (87), Expect = 0.43 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Frame = +3 Query: 130677 LQDELDRRQSRLIERRYQQSGLEEKLTLTEFDWSFNPKLPRQACFQLHALKFVAA----- 130841 + +E R + R I + QS + L ++ P+ +Q + A+++V Sbjct: 59 IYEEYKRNKQRKINNIFNQSNVNPSLRDATVK-NYKPQNEKQVHAKQTAIEYVQGFSTKE 117 Query: 130842 GENALIIGKPGTGKSHLAKAVAYQAVLQGHKVQYLETDDFFNR 130970 ++ ++ G GTGKSHLA A+A +GH V ++ +R Sbjct: 118 PKSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDR 160 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,179,237,935 Number of Sequences: 14420 Number of extensions: 22328946 Number of successful extensions: 85893 Number of sequences better than 0.5: 60 Number of HSP's better than 0.5 without gapping: 11933 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 85685 length of database: 3,019,461 effective HSP length: 128 effective length of database: 1,173,701 effective search space used: 114622465959 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig192 (271,246 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 233 5e-60 ref|NP_859396.1|hypothetical protein 122 2e-26 ref|NP_818506.1|gp206 122 2e-26 ref|NP_536395.1|ISBt3 transposase subunit protein 114 3e-24 ref|YP_025041.1|putative transposase B 101 4e-20 ref|YP_024677.1|gp04 96 2e-18 ref|NP_046572.1|ABC transporter 91 4e-17 ref|NP_958229.1|gene 55 protein 86 1e-15 ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family 82 3e-14 ref|NP_817650.1|gp61 81 5e-14 ref|NP_046877.1|putative non-heme haloperoxidase 77 6e-13 ref|NP_817938.1|gp87 72 2e-11 ref|NP_945089.1|gp58 67 6e-10 ref|NP_046669.1|similar to part of DNA ligases 65 2e-09 ref|YP_164334.1|integrase 59 2e-07 ref|NP_612994.1|hypothetical protein 55 2e-06 ref|NP_049482.1|serine 55 2e-06 ref|NP_848235.1|integrase 52 3e-05 ref|NP_818239.1|gp188 49 2e-04 ref|NP_958192.1|gene 16 protein 48 4e-04 ref|NP_835600.1|putative glycosyltransferases 45 0.002 ref|NP_620626.1|putative transposase 44 0.006 ref|NP_112034.1|integrase 44 0.006 ref|NP_536385.1|conserved hypothetical protein 43 0.012 ref|NP_945059.1|gp28 43 0.012 ref|NP_542261.1|unknown 42 0.036 ref|NP_061549.1|Orf53 42 0.036 ref|NP_061531.1|integrase 40 0.10 ref|NP_818386.1|gp85 40 0.10 ref|YP_164321.1|hypothetical protein 38 0.40 ref|YP_164067.1|large terminase subunit 38 0.40 >ref|NP_945090.1|gp59 Length = 429 Score = 233 bits (595), Expect = 5e-60 Identities = 142/414 (34%), Positives = 209/414 (50%), Gaps = 1/414 (0%) Frame = -2 Query: 256458 PSSSPSTGRSKAAAVFRVTAGNXXXXXXXXXXXFYATQIAAVFFPAASEFASLMMTFAVF 256279 PS+S T R AV V GN F++ IA +FFP+ + SL+++ + Sbjct: 12 PSASSDTHRR---AVIAVIVGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLLSVSTI 68 Query: 256278 GAGFLMRPLGAIVLGAYIDDVGRRKGLIVTLAIMASGTILIAFVPGYATIGMLAPVLVLA 256099 G GF MRP+G IV+G D VGRR L VT+A+M +GT +I F P Y G+ AP++++ Sbjct: 69 GVGFFMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVV 128 Query: 256098 GRLLQGFSAGAELGGVSVYLAELATPGRKGFYTXXXXXXXXXXXXXXXALGFALNHWLST 255919 RLLQGFSAG E+GG + YL E R G+YT L + L Sbjct: 129 ARLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDE 188 Query: 255918 SAIAAWGWRVPFFVGCMIVPFIFMLRRNLQETQEFTARRHRPSMKEVFATLARNWGVVIA 255739 I +WGWR+PF +G + P +R L + F A V + + Sbjct: 189 QQIESWGWRIPFLLGLGLGPVGIYIRSRLND-PGFPADERLGECAPVVEVVRSFSREALV 247 Query: 255738 GMMLVAMTTTSFYLITVYAPTFGKTVLHLSTADSLLVTLCVGVSNFVWL-PIGGALSDRI 255562 G LV T Y++ Y PT+ VL L ++ + L VG S +++ P+ G LSD Sbjct: 248 GFGLVVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVL-VGASIVLFVTPLIGHLSDLF 306 Query: 255561 GRRPLLVGMTLLAIATAYPALSLLAHAPSFINMLLVLLWLSFMYGIYNGAMVVALTEVMP 255382 GRR L G L+AI AYP ++L AP +L+ + + Y G ++ AL+++ P Sbjct: 307 GRRWFLAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFP 366 Query: 255381 VEVRVAGFSLAYSLATAVFGGFTPAISTALIHMTGDKAAPGYWMSLAAVCALLA 255220 V G S++Y+LA FGGF+ AI T I T + AP +++ AA+ +L++ Sbjct: 367 DGVLSTGISISYNLAVITFGGFSAAIITWAIATTHNNLAPAFYVIAAAIVSLIS 420 Score = 222 bits (565), Expect = 1e-56 Identities = 130/391 (33%), Positives = 195/391 (49%), Gaps = 1/391 (0%) Frame = -3 Query: 112310 AVLRVTSGNXXXXXXXXXXXFYATTISRVFFPTASEFASLLLTFAVFGAGFLMRPLGAIV 112131 AV+ V GN F++ I+++FFP+ + SLLL+ + G GF MRP+G IV Sbjct: 22 AVIAVIVGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLLSVSTIGVGFFMRPIGGIV 81 Query: 112130 LGAYIDEVGRRKGLIVTLSIMASGTVLIACVPGYATIGVAAPVLVLLGRLLQGFSAGAEL 111951 +G D+VGRR L VT+++M +GT +I P Y G+ AP+++++ RLLQGFSAG E+ Sbjct: 82 IGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGGEM 141 Query: 111950 GGVSVYLAEMATPGHKGFYTSWXXXXXXXXXXXXXXIGYLLNHLLTSQEIGAWGWRIPFF 111771 GG + YL E G+YTSW + + L Q+I +WGWRIPF Sbjct: 142 GGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWRIPFL 201 Query: 111770 IGCAIVPAIFLLRRSLQETAEFTARTHRPRAREVFATMLKNWRTVFAGMLLVAMXXXXXX 111591 +G + P +R L + F A V + R G LV Sbjct: 202 LGLGLGPVGIYIRSRLNDPG-FPADERLGECAPVVEVVRSFSREALVGFGLVVFWTVCSY 260 Query: 111590 XXXXXXXTFGKAVLKLSTADSLIVTLCVGLSNFVWL-PVGGALSDRIGRKPILVAVTVLA 111414 T+ VLKL ++ I L VG S +++ P+ G LSD GR+ L ++A Sbjct: 261 VLLFYIPTYASKVLKLPSSTGFIAVL-VGASIVLFVTPLIGHLSDLFGRRWFLAGALLVA 319 Query: 111413 IATSYPALAWLAGAPSFGRMLAVLLWLSFFFGMYNGAMVAALTEIMPANVRVAGFSLAFS 111234 I +YP A L AP +L + Y G ++AAL+++ P V G S++++ Sbjct: 320 IVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFPDGVLSTGISISYN 379 Query: 111233 LATAVFGGFTPAVSTYLIELTGDKAAPGYWL 111141 LA FGGF+ A+ T+ I T + AP +++ Sbjct: 380 LAVITFGGFSAAIITWAIATTHNNLAPAFYV 410 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 122 bits (306), Expect = 2e-26 Identities = 85/292 (29%), Positives = 136/292 (46%), Gaps = 11/292 (3%) Frame = +1 Query: 29956 LVDALREEYGXXXXXXXXXXXXXXYFY-----HRSPIRVADKYAD--VRRTVAEIFEDNH 30114 L+D LRE+YG Y++ H R A D ++R + ++++NH Sbjct: 4 LLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQHDDWLKREIQRVYDENH 63 Query: 30115 RSYGYRRVQAALSRQRVFLSEKVVRRLMKQGGLHAARPKRRRYRSYIGEISPAPDNIINR 30294 + YG R+V L R+ + ++ V RLM GL A + ++ R+ I + A + +NR Sbjct: 64 QVYGVRKVWRQLLREGIRVARCTVARLMAVMGL-AGVLRGKKVRTTISRKAVAAGDRVNR 122 Query: 30295 DFHANAPNEKWVTDISEFQIPAGKVYLSPMIDCFDGMVVSWSIGTSPDAELVNSMLDAAI 30474 F A P++ WV D + G VY++ +ID F G +V W + +S + V L+ A+ Sbjct: 123 QFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQAL 182 Query: 30475 ETVTEDDETPIVHSDRGGHYRWPGWLSRVAKAKLIPSMSRKACSPDNAACEGFFGRLKTE 30654 I HSD+G Y + R+ +A L+ S S DNA E G K E Sbjct: 183 --WARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAE 240 Query: 30655 MFYTGDWRSTTIAEFVEVLDAYVRWYNEKRIKGSLGYLSPIE----YRESLG 30798 + + W++ E + +V WYN +R+ G LG+ P E Y S+G Sbjct: 241 VIHRKSWKNRAEVELATL--TWVDWYNNRRLLGRLGHTPPAEAEKAYYASIG 290 Score = 47.8 bits (112), Expect = 5e-04 Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 2/153 (1%) Frame = +1 Query: 43747 NQVWSMDFMHDQLADGRSIRLFNVIDDFNREALGIEIDFSLPSERVIRARRQIIGWRGRP 43926 +Q+W DF + G F +ID F +G + S+ + V+ A Q + W RP Sbjct: 130 DQLWVADFTYVSTWQGFVYVAF-IIDVFAGYIVGWRVSSSMETTFVLDALEQAL-WARRP 187 Query: 43927 KAI--RCDNGPEYLSAAIIERARQYDIRLDYIQPGKPQQNAYVERFNRPVRYEWLSQYHW 44100 D G +Y+S A ER ++ + G NA E N + E + + W Sbjct: 188 SGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSW 247 Query: 44101 EDLDHVQRFATDWTWTYNHDRQNMALGGFTPKQ 44199 ++ V+ W YN+ R LG P + Sbjct: 248 KNRAEVELATLTWVDWYNNRRLLGRLGHTPPAE 280 >ref|NP_818506.1|gp206 Length = 282 Score = 122 bits (305), Expect = 2e-26 Identities = 72/235 (30%), Positives = 130/235 (55%), Gaps = 2/235 (0%) Frame = +1 Query: 264910 RMIWKGAISFGLVHVPVQLFPATRTVKPSFRMLDRRSMDPVGYRQINKRTGKEVTRDDIV 265089 R +W GA++FGLV+VPV+++ AT + + + Y ++ + G++V D+ Sbjct: 2 RAVWTGAVNFGLVNVPVKMYAATEEHDLKGHLAHVQDGGRIRYHKVCETCGEQVHTADLG 61 Query: 265090 RGYEYEKERYVVLTDDEIRSANPESTQTVDILTFVDEDAVSFLYLDTPYYLVPDRKGEKV 265269 + +E + + +LTD+++ E+ + +D++ FV V + LD PYYL + + Sbjct: 62 KVFEVDGQT-ALLTDEDLAELPSENNKVIDVVEFVPAGEVDPILLDKPYYLNAE-GSVRP 119 Query: 265270 YALLRDALNDSGKIGIALVVMRDRQHLGALIPVG--PLLALDTLRWQDELRPLDELSVPA 265443 YALL L+D+ K+ I V +R ++HL L G +L L TLRW DE+R E P Sbjct: 120 YALLARTLSDADKVAIVRVTLRSKEHLAVLRVTGKNEVLTLQTLRWPDEVR---EPDFPK 176 Query: 265444 DDAKRAGVTAREFEMAKKLIDDMSGKWTPDEYHDTFRDDILEMVERKVRAGKIEE 265608 D K ++ E ++A L+D++S + PD++ DT++ ++ +VE K+ ++ E Sbjct: 177 LDNK-PELSEAELKVAAMLVDELSAPFNPDKHQDTYKVELRALVESKLEPVEVPE 230 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 114 bits (286), Expect = 3e-24 Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 3/234 (1%) Frame = +1 Query: 30088 VAEIFEDNHRSYGYRRVQAALSRQRVFLSEKVVRRLMKQGGLHAARPKRRRYRSYIGEIS 30267 + +++ N + YG +V ++R+ + ++ V RLMK GL A + +R R+ I +++ Sbjct: 35 IKRVWQANMQVYGVPKVWKQMNREGITVARCTVGRLMKLQGLRGA-VRGKRVRTTITDVT 93 Query: 30268 -PAPDNIINRDFHANAPNEKWVTDISEFQIPAGKVYLSPMIDCFDGMVVSWSIGTSPDAE 30444 P P + +NR F A+ PN+ WV+D + G +Y++ +ID F +V W + +S + Sbjct: 94 APRPLDRVNRQFKADRPNQLWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSSSMTTD 153 Query: 30445 LVNSMLDAAI-ETVTEDDETPIVHSDRGGHYRWPGWLSRVAKAKLIPSMSRKACSPDNAA 30621 V L+ A+ +D T I HSDRG Y + R+A+A + PS+ + S DNA Sbjct: 154 FVLDALEQALYARQPGEDGTLIHHSDRGSQYVSIRYSERLAEAGIEPSVGSRGDSYDNAL 213 Query: 30622 CEGFFGRLKTEMFY-TGDWRSTTIAEFVEVLDAYVRWYNEKRIKGSLGYLSPIE 30780 E G KTE+ + W++ E + +V WYN R+ LGY+ P E Sbjct: 214 AETINGLYKTELIHRRAPWKTRESVELATL--EWVAWYNHHRLMEPLGYIPPAE 265 Score = 47.4 bits (111), Expect = 7e-04 Identities = 42/156 (26%), Positives = 63/156 (40%), Gaps = 5/156 (3%) Frame = +1 Query: 43747 NQVWSMDFMHDQLADGRSIRLFNVIDDFNREALGIEIDFSLPSERVIRARRQIIGWR--G 43920 NQ+W DF + G F VID F R +G + S+ ++ V+ A Q + R G Sbjct: 111 NQLWVSDFTYVSTWQGWLYVAF-VIDVFARRIVGWRVSSSMTTDFVLDALEQALYARQPG 169 Query: 43921 RPKAI--RCDNGPEYLSAAIIERARQYDIRLDYIQPGKPQQNAYVERFNRPVRYEWLSQY 44094 + D G +Y+S ER + I G NA E N + E + + Sbjct: 170 EDGTLIHHSDRGSQYVSIRYSERLAEAGIEPSVGSRGDSYDNALAETINGLYKTELIHRR 229 Query: 44095 H-WEDLDHVQRFATDWTWTYNHDRQNMALGGFTPKQ 44199 W+ + V+ +W YNH R LG P + Sbjct: 230 APWKTRESVELATLEWVAWYNHHRLMEPLGYIPPAE 265 Score = 42.4 bits (98), Expect = 0.021 Identities = 65/265 (24%), Positives = 95/265 (35%), Gaps = 20/265 (7%) Frame = -1 Query: 61930 RRARVTNDAGLVEEIQ-AHVAHLPTYGYRRVWALLRRSREQSGAPCINVKR--VYRVMRE 61760 R AR D L EI+ A++ YG +VW + R I V R V R+M+ Sbjct: 21 RCARAKRDELLQPEIKRVWQANMQVYGVPKVWKQMNREG-------ITVARCTVGRLMKL 73 Query: 61759 HQL--LLRRPGVR---------QDKRRHDGRVAVDRSNTRWCSDGFEFRCDDGTPLRVTF 61613 L +R VR + R + + DR N W SD F + L V F Sbjct: 74 QGLRGAVRGKRVRTTITDVTAPRPLDRVNRQFKADRPNQLWVSD-FTYVSTWQGWLYVAF 132 Query: 61612 ALDCCDREAISWAATTGGHSGDVVRDVMLAAVEQRFGTTQAAQSIEWL--TDNGSAYIDH 61439 +D R + W S + D +L A+EQ Q + + +D GS Y+ Sbjct: 133 VIDVFARRIVGWRV-----SSSMTTDFVLDALEQALYARQPGEDGTLIHHSDRGSQYVSI 187 Query: 61438 RTRSFARELGLEPLTTPVRSPQSNGMAES----FVKTMKHNYVAYMDKPDAPTALSRLAI 61271 R E G+EP N +AE+ + + H + + A Sbjct: 188 RYSERLAEAGIEPSVGSRGDSYDNALAETINGLYKTELIHRRAPWKTRESVELATLEWVA 247 Query: 61270 AFEHYNERHPHKALKYRSPREFRRN 61196 + H+ P L Y P E N Sbjct: 248 WYNHHRLMEP---LGYIPPAEAEAN 269 >ref|YP_025041.1|putative transposase B Length = 280 Score = 101 bits (251), Expect = 4e-20 Identities = 76/265 (28%), Positives = 126/265 (47%), Gaps = 14/265 (5%) Frame = +1 Query: 30028 YFYHRSPI----RVADKYADVRRTVAEIFEDNHRSYGYRRVQAALSRQ----RVFLSEKV 30183 Y+ +RSP R D AD+++ + IF + + YG ++ L+ + ++ S + Sbjct: 12 YYRYRSPKPSKRRAED--ADLKQRILRIFAEFKQRYGVMKIHHELNLELQPLQLRCSPRR 69 Query: 30184 VRRLMKQGGLHAARPKRRRYRSYIGEISPAPDNIINRDFHANAPNEKWVTDISEFQIPA- 30360 + RLMK+ +H+ + + S N++ +DF N+KW D++ Q Sbjct: 70 ISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYIQTKRN 129 Query: 30361 GKVYLSPMIDCFDGMVVSWSIGTSPDAELVNSMLDAAIE--TVTEDDETPIVHSDRGGHY 30534 G YLS ++D ++ +S D +LV L++A++ T+T D I+H+D G Y Sbjct: 130 GWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGD---LIIHTDLGSQY 186 Query: 30535 RWPGWLSRVAKAKLIPSMSRKACSPDNAACEGFFGRLKTEMFY---TGDWRSTTIAEFVE 30705 + R+ + + S SRK C DNA E F LK E Y + T A E Sbjct: 187 TSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFE 246 Query: 30706 VLDAYVRWYNEKRIKGSLGYLSPIE 30780 + A+ YN KRI SLGY +P++ Sbjct: 247 YVHAF---YNRKRIHSSLGYQTPLQ 268 >ref|YP_024677.1|gp04 Length = 90 Score = 95.5 bits (236), Expect = 2e-18 Identities = 48/89 (53%), Positives = 63/89 (70%) Frame = +2 Query: 24989 MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSARTG 25168 MNK +LI+ VAA G++K+D+ ++AVL+ IT ++ + + V L GFG FS G R+ARTG Sbjct: 1 MNKSDLINHVAAETGMTKTDSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTG 60 Query: 25169 RNPTTGEEIAIAAANTVKFAAGKAFKDAV 25255 RNP TGEEI I A+ KF AGK KDAV Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKDAV 89 >ref|NP_046572.1|ABC transporter Length = 705 Score = 91.3 bits (225), Expect = 4e-17 Identities = 93/479 (19%), Positives = 204/479 (42%) Frame = +2 Query: 223532 VRDMTFVQVTQHTVASFTTRTFGHLHRLGARFHAQRETGAVVRDLEKGTAGIGYLLGVAV 223711 VR ++++ + F + +L F RE G V+ G + V Sbjct: 225 VRSYLIIKLSYKVDKEMSNVYFNKVTKLPINFFENREDGEVISRFNDGIYIKDFFSANFV 284 Query: 223712 FTVVPTAIEIGSVLVIVISKYGGGFTAIILVTFAVYAAYTIALTRRRMRYQRRVNALEAE 223891 ++ + +G L +++ + I++ + + I + +++ +A+ Sbjct: 285 TAIIDIILILG--LGVILYRTNNILFLTIILPILLLSCLAILFFDHLKKKNQKLMEDKAK 342 Query: 223892 SNSRVVDSLLNVDTVKYFAREDVERSRLERVLDAWRDAGVDNQYALSTLHIGQSACIGAG 224071 S S +++ L N+ TV + + D ++ A+ + I + + Sbjct: 343 STSLLINFLKNMTTVYSLNKTSFFLEKFHLTYDKQLNSTFSVAKAVISNEILKGLIQNSF 402 Query: 224072 IAAVMLLAGQHVARGTMTVGDLVLINAYIIQISLPLNALGFVFREANDALTNIERLFGLL 224251 ++ + + V +M++G L+ IN + L+ + + + A R F ++ Sbjct: 403 TIIILWVGTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHVASIRFFDVV 462 Query: 224252 DARGKPGEDGDAPGAQPLVVRGGAIEFEHVDFGYEPSRQILWDVSFRIEPXXXXXXXXXX 224431 + + +D + + ++ I+ +++ G +P R I+ D++ ++ Sbjct: 463 NYPVQ--QDSNENLTELDFIQN--IKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGES 518 Query: 224432 XXXKSTLARLLFRLYQPDAGIIRIDGQDLRLVTERSLRDALGIVPQDTILFNDTLAYNIG 224611 KST A+ L +LY+ I ++G D+ S+R + + ++ LF T+ N+ Sbjct: 519 GTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLC 578 Query: 224612 YGKRDATRAEIIAAARSAQLDAFIERLPDAYDTRVGERGVRLSGGERQRVAIARALLKAP 224791 G+ + EI A +Q FI L Y ++ E G LS G++QR+A+ARA+L P Sbjct: 579 MGEI-FDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQP 637 Query: 224792 PIVVFDEATSALDTRSERAIQQELMRVAQHRTSLIIAHRLSTVVDADRILVMEHGRLVE 224968 +++ DE+ S +D + + I + L R+ ++I H + ++ LV + R++E Sbjct: 638 QVLILDESLSNIDPDNTKLIYETLHRM--DCLIILITHNDPSNFKYNKKLVFRNNRIIE 694 Score = 58.2 bits (139), Expect = 4e-07 Identities = 54/212 (25%), Positives = 101/212 (47%), Gaps = 9/212 (4%) Frame = +3 Query: 68454 SVKNIHKSFGD---HHVLKGISLDAHEGDVISILGASGSGKSTFLRCLNLLETPDDGSVA 68624 ++K ++ + G ++++ I+L D + I+G SG+GKSTF + L+ L D S+ Sbjct: 482 NIKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIY 541 Query: 68625 LAGEELKMKRTRDGKLQPGDRRQVDRIRSQLGMVFQNFNLWSHMTVLDNLVEGPL---RV 68795 L G ++ +R IR ++ + +N L+ T+ +NL G + Sbjct: 542 LNGLDI-------------NRYDHLSIRKRIVYIDENPFLFKG-TIKENLCMGEIFDQNE 587 Query: 68796 LKRSXXXXXXXXXXXXXXXGLADKRGYYPAHLSGGQQQRVAIARALAMHPKVMLFDEPTS 68975 ++ + + K ++LS GQ+QR+A+ARA+ P+V++ DE S Sbjct: 588 IENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLS 647 Query: 68976 ALDPE---LVGEVLRVMRSLAEEGRTMLVVTH 69062 +DP+ L+ E L M L ++++TH Sbjct: 648 NIDPDNTKLIYETLHRMDCL------IILITH 673 Score = 49.7 bits (117), Expect = 1e-04 Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 11/200 (5%) Frame = +3 Query: 81978 LDDISFRTHRREFVCVIGPSGCGKSTLIRILAGLDTQTSGEVLLDGKPVQGP---GADRG 82148 ++DI+ R++ V +IG SG GKST + L+ L + L+G + + Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 82149 MVFQGYTLFPWL-TVKKNVMFGLRMNGSSSGEAEREALQWLDLVGLTRFADVYPHQLSG- 82322 +V+ F + T+K+N+ G + E E + + Y ++LS Sbjct: 559 IVYIDENPFLFKGTIKENLCMGEIFD---QNEIENACIMSQCHEFICNLDKQYSYKLSEN 615 Query: 82323 ------GMKQRVAIARSLANRPRILLMDEPFGALDAQTRAKMQAHLLDIWRNIDVTILFI 82484 G KQR+A+AR++ ++P++L++DE +D + L +D I+ I Sbjct: 616 GSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETL----HRMDCLIILI 671 Query: 82485 THDLDEAILLADRILVLKAN 82544 TH+ D + ++ LV + N Sbjct: 672 THN-DPSNFKYNKKLVFRNN 690 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 86.3 bits (212), Expect = 1e-15 Identities = 75/280 (26%), Positives = 120/280 (42%), Gaps = 1/280 (0%) Frame = +1 Query: 29944 EKTKLVDALREEYGXXXXXXXXXXXXXXYFYHRS-PIRVADKYADVRRTVAEIFEDNHRS 30120 E+ ++ LR Y Y Y ++ P + + A +R V E+ +H S Sbjct: 14 EQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGS 73 Query: 30121 YGYRRVQAALSRQRVFLSEKVVRRLMKQGGLHAARPKRRRYRSYIGEISPAPDNIINRDF 30300 G R + +R+ + + RLMK+ GL + + RY+ G A N + R F Sbjct: 74 AGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRG-GHEHVAIPNYLERQF 132 Query: 30301 HANAPNEKWVTDISEFQIPAGKVYLSPMIDCFDGMVVSWSIGTSPDAELVNSMLDAAIET 30480 PN+ W D++ YL+ ++D F V W++ SPD+ L L+ A ET Sbjct: 133 AVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWET 192 Query: 30481 VTEDDETPIVHSDRGGHYRWPGWLSRVAKAKLIPSMSRKACSPDNAACEGFFGRLKTEMF 30660 + + HSD+G HY + + + ++ SMSR+ DN+ E FF LK E Sbjct: 193 RGKPGGV-MFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWM 251 Query: 30661 YTGDWRSTTIAEFVEVLDAYVRWYNEKRIKGSLGYLSPIE 30780 + S + A + D V +Y+ R G L P E Sbjct: 252 PVVGYVSFSEAAHA-ITDYIVGYYSALRPHEYNGGLPPNE 290 Score = 52.0 bits (123), Expect = 3e-05 Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 12/195 (6%) Frame = +1 Query: 43651 RIYRELELNLRIKPRKRLVRQVPEPLAVPRAV---------NQVWSMDFMHDQLADGRSI 43803 R+ +EL L +P R R E +A+P + NQVW D + R Sbjct: 97 RLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGK-RWA 155 Query: 43804 RLFNVIDDFNREALGIEIDFSLPSERVIRARRQIIGWRGRPKAI--RCDNGPEYLSAAII 43977 L V+D F R+ +G + FS S ++A RG+P + D G Y S Sbjct: 156 YLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFR 215 Query: 43978 ERARQYDIRLDYIQPGKPQQNAYVERFNRPVRYEWLSQYHWEDLDHVQRFATDW-TWTYN 44154 + +Y IR + G N+ +ERF R ++ EW+ + TD+ Y+ Sbjct: 216 QLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYS 275 Query: 44155 HDRQNMALGGFTPKQ 44199 R + GG P + Sbjct: 276 ALRPHEYNGGLPPNE 290 >ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family Length = 92 Score = 81.6 bits (200), Expect = 3e-14 Identities = 44/89 (49%), Positives = 54/89 (60%) Frame = +2 Query: 24989 MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSARTG 25168 MNK ELI VA GVSK + + +V+ V D I++A+ E V + GFG F +R+AR G Sbjct: 1 MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60 Query: 25169 RNPTTGEEIAIAAANTVKFAAGKAFKDAV 25255 RNP TGEEI I A F KA KDAV Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALKDAV 89 >ref|NP_817650.1|gp61 Length = 274 Score = 80.9 bits (198), Expect = 5e-14 Identities = 77/257 (29%), Positives = 113/257 (43%), Gaps = 5/257 (1%) Frame = +3 Query: 165393 PIMFHHGWPLSSDDWDAQMLFFVQRGFRVIAHDRRGHGRSTQVSDGHDMDHYAADAFAVV 165572 P++F HG +S+ ++ ++ QRGF V A D HGR+ + GH ++ + Sbjct: 26 PLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFGHTVEEMTRVTLRAL 85 Query: 165573 EALDLRNAVHVGHSTGGGEVARYVARHGEPAGRVAKAVLVSAVPPLMLKTDANPAGLPLE 165752 +AL + AV VGHS GGG VA R+ E RV A+L+ A + PL Sbjct: 86 DALGIDQAVFVGHSMGGGMVAEIAPRYPE---RVLAAILLDAAAGKEHHANLKD---PLR 139 Query: 165753 VFDGFRKALADNRAQFYLDVPSGPFYGFNRPGATVHQGVIQNWWRQGMIG--SAKAHYDG 165926 A+ +DV + AT G+ Q R G +A Y Sbjct: 140 ATQRLSGAV--------VDVLGDTYQAIKLRSATEGLGLAQT-LRSSFAGFRFVRAAYAL 190 Query: 165927 IKAFSETDQTEDLRSISVPTLVLHGEDDQIVPIADAALKSIKLLKNGTLKTYPGYSHGML 166106 +KA +E + ++++ V T V+HG DQIVP AA KS G L G+ ML Sbjct: 191 LKADTE-PLLKAMKALDVQTAVIHGLSDQIVPF--AAGKSAAEASGGALYAVEGFHSWML 247 Query: 166107 T---VNADVLNADLLAF 166148 + A+V+ LL F Sbjct: 248 ADPELAAEVIVFALLGF 264 Score = 48.1 bits (113), Expect = 4e-04 Identities = 46/143 (32%), Positives = 62/143 (43%), Gaps = 4/143 (2%) Frame = +3 Query: 88479 IVSDGLRLHYVSWGRDDAPAVVMLHGLRSYAQTWADAARALTDR-YRVVALDQRGRGASD 88655 ++ DG R+ G +V LHGL A + + L R + V ALD G +D Sbjct: 9 VLDDGFRVGVSQVGT--GVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTD 66 Query: 88656 WDP---RREYYAAAYVRDLDALVRALGLRRFVLVGHSMGGANAFVYAGRDPERLAGLVIE 88826 P E +R LDAL G+ + V VGHSMGG A R PER+ ++ Sbjct: 67 SLPFGHTVEEMTRVTLRALDAL----GIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILL 122 Query: 88827 DMGPGASVGSHGSARIKRELLET 88895 D A+ G A +K L T Sbjct: 123 D----AAAGKEHHANLKDPLRAT 141 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 77.4 bits (189), Expect = 6e-13 Identities = 71/260 (27%), Positives = 108/260 (41%), Gaps = 9/260 (3%) Frame = +3 Query: 165393 PIMFHHGWPLSSDDWDAQMLFFVQRGFRVIAHDRRGHGRSTQVSDGHDMDHYAADAFAVV 165572 P++F HG +S+ ++ + + GFRVIA D HGRS + GH ++ + Sbjct: 24 PLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTGHTVEDMTRVTLKTL 83 Query: 165573 EALDLRNAVHVGHSTGGGEVARYVARHGEPAGRVAKAVLVSAVPPLMLKTDANPAGLPLE 165752 + LD+ A+ GHS GGG V ARH RVA AVL+ A + Sbjct: 84 DELDIHRAIFAGHSMGGGMVVEIAARHPH---RVAAAVLLDAAAGQEHHDNIKVGHYATL 140 Query: 165753 VFDGFRKALADNRAQFYLDVPSGPFYGFNRPGATVHQGVIQNWWRQGMIGSAKAHYDGIK 165932 F +K + D+ + + + + +G + G++ Sbjct: 141 AFRAAKKL-----GEAVTDIVGDGYEAMH---------LRDTGEKLSFLGMLRDSVSGLR 186 Query: 165933 ------AFSETDQTEDLRSI---SVPTLVLHGEDDQIVPIADAALKSIKLLKNGTLKTYP 166085 A + D T L ++ VPT VLHG DQIVP +A L + K + N + Sbjct: 187 FVRAAFALMKADTTPLLHAMYRHGVPTAVLHGLHDQIVPY-EAGLSTAK-ITNASFYGVD 244 Query: 166086 GYSHGMLTVNADVLNADLLA 166145 G+ ML L ADL+A Sbjct: 245 GFHSWMLA--DPELAADLIA 262 Score = 49.3 bits (116), Expect = 2e-04 Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 4/125 (3%) Frame = +3 Query: 88479 IVSDGLRLHYVSWGRDDAPAVVMLHGLRSYAQTWADAARALTDR-YRVVALDQRGRGASD 88655 +++DG R+ + G AP +V LHGL A+ + + L + +RV+ALD G S Sbjct: 7 VLADGFRVGVSTVGTG-AP-LVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSG 64 Query: 88656 WDPRR---EYYAAAYVRDLDALVRALGLRRFVLVGHSMGGANAFVYAGRDPERLAGLVIE 88826 P E ++ LD L + R + GHSMGG A R P R+A V+ Sbjct: 65 SLPTGHTVEDMTRVTLKTLDEL----DIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLL 120 Query: 88827 DMGPG 88841 D G Sbjct: 121 DAAAG 125 >ref|NP_817938.1|gp87 Length = 284 Score = 72.4 bits (176), Expect = 2e-11 Identities = 66/268 (24%), Positives = 117/268 (43%), Gaps = 16/268 (5%) Frame = +1 Query: 264931 ISFGLVHVPVQLFPATRTVKPSFRMLDRRSMDPVGYRQINKRT---GKEVTRDDIVRGYE 265101 ++ GLV VPV++ + + M G ++ K G+ V DI +G+E Sbjct: 9 LTIGLVTVPVKMVGVSESHDRKASMYHPHEDGNFGKIKMPKLCEDCGEVVPTADIAKGFE 68 Query: 265102 YEKERYVVLTDDEIRSANPESTQTVDILTFVDEDAVSFLYL--DTPYYLVPD----RKGE 265263 E V+LT DE+ S + +++ FV + ++ + + Y LVPD R+ Sbjct: 69 -EGGDIVILTADELASIAAATGAALEVPQFVKAEQINPMLFANENIYRLVPDPKRGRQAA 127 Query: 265264 KVYALLRDALNDSGKIGIALVVMRDRQHLGAL----IPVGPLLALDTLRWQDELRPLDEL 265431 Y ++R L +G+ R LG L G +L + + W DELR + + Sbjct: 128 TTYLMVRHILVSQELVGVVQYTRWGRNRLGVLDVEPSDDGGVLVIRNMMWADELRSTEGI 187 Query: 265432 ---SVPADDAKRAGVTAREFEMAKKLIDDMSGKWTPDEYHDTFRDDILEMVERKVRAGKI 265602 +V DD + R + +++ M+G W P Y D + + + E + K + Sbjct: 188 VPTNVTEDD-----IDPRLLPVMASVVESMTGDWDPTAYTDRYTEQLSEAITAKAQG--- 239 Query: 265603 EEIEERPAETGRTATNVVDLTELLKRSL 265686 +EI +E+G+ +V DL L+ S+ Sbjct: 240 DEIATVASESGKAIDDVSDLLAKLEASI 267 >ref|NP_945089.1|gp58 Length = 297 Score = 67.4 bits (163), Expect = 6e-10 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 1/146 (0%) Frame = +2 Query: 251969 FRAVVELGSFRKAAESISISQPALSRRIEKLEDALGVRLFERTTRSVTLTTVGRVFAPSA 252148 F A G+F +AAE ++++Q A+S+++ KLE LG LF R +++ LT G+ +A Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRV 74 Query: 252149 EQLLDD-LDVALLGIRDVSSSRLGHVTIACVPSVAYYFLPNVIASYHRRFPRIRVKLLDA 252325 +L D ++ L +++ + L TIAC A FL + IA + P + V++L Sbjct: 75 HAILADCVEATALVMKEQTPHSL---TIACASGTATLFLADRIAEFSAEHPEVSVRIL-- 129 Query: 252326 SANEVLSAVISGEADFGVSFMGSQEP 252403 E + + + E D GV ++ P Sbjct: 130 -VREGVFNLNAAEFDIGVYYIRDVPP 154 Score = 57.8 bits (138), Expect = 5e-07 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 2/152 (1%) Frame = -3 Query: 212474 LRQLKYFVTTVESGSVAEASRQLFIAQPSISSAIKGLEESFGVKLFIRHHAQGVSLTPGG 212295 L+ L +F G+ A+ +L +AQ ++S + LE G LF+R A+ + LT G Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVR-DAKALHLTRAG 67 Query: 212294 TRFYRKAQELLRIAHEFEQNALADNDVVTGQIDIGCFETVAPLYLPQLIAGFRERYPGVN 212115 ++ + +L A E AL + + I C A L+L IA F +P V+ Sbjct: 68 QQYADRVHAIL--ADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVS 125 Query: 212114 IRL--RDGEQHELVQGLTAGTFDLAFLYDHDL 212025 +R+ R+G V L A FD+ Y D+ Sbjct: 126 VRILVREG-----VFNLNAAEFDIGVYYIRDV 152 >ref|NP_046669.1|similar to part of DNA ligases Length = 270 Score = 65.5 bits (158), Expect = 2e-09 Identities = 63/221 (28%), Positives = 94/221 (42%), Gaps = 11/221 (4%) Frame = +1 Query: 266950 IAPQLATLVDAPPADADWRYELKFDGYRILARIAGKGARRHVKLMTREGRDWTAKLRAQR 267129 ++P L + P D ++ ELKFDG R++ +KL TR + T+K Sbjct: 3 VSPMLLHSIKEPFNDENYITELKFDGIRLIL----SKFDNQIKLYTRHNNEVTSKFPELM 58 Query: 267130 DALAALPVDDAWLDGEAVVLGANGLPDFQALQNAFGAGQS-DDVTLFVFDLPYLDGYXXX 267306 D +P D LDGE +V + G PDF+A+ F + +S ++ VFD+ Y DG Sbjct: 59 DL--DIP-DGTVLDGEVIVAASGGAPDFEAVMERFMSKKSAHNIVYCVFDVIYKDGQSIA 115 Query: 267307 XXXXXXXXXXXXXXXXDSDPTRLRFSPDLGDDVASLIASACDTGLEGLIGKRAESRYR-G 267483 D P G+ +A A + LEG++ K+A S Y Sbjct: 116 AKPLTERKTVLNSLELD-HPNVFVIEGTQGNGLA-YFNLAKEKNLEGIVIKKANSPYEIN 173 Query: 267484 GRSAAWIKLKCRRRQEFVIGGYTE---------PSGSRHGF 267579 RS W+K+ E +I GYT+ P G+ GF Sbjct: 174 KRSHNWLKVINYDYTEVLITGYTKKDIKFLLSYPDGTSAGF 214 >ref|YP_164334.1|integrase Length = 411 Score = 58.9 bits (141), Expect = 2e-07 Identities = 95/441 (21%), Positives = 153/441 (34%), Gaps = 13/441 (2%) Frame = +1 Query: 23302 LTVRQIEAARATGKRYFLSDGRGLFLRVGPVGGKTWFVRVSINGK*LDKPLGKAWARSTT 23481 LT + A+A K Y L+D GL L V G K+W R S+NG+ LG T Sbjct: 3 LTDTAVRQAKAEAKDYTLADIDGLSLFVSHKGTKSWHFRFSLNGQQKRVSLG-------T 55 Query: 23482 DAQLSLEDXXXXXXXXXXXXXDGMDYLEAKKRERQAKVAKAAMADLTFGDLFDAWFATIN 23661 +LSL D G+D + +R K + TF + + W Sbjct: 56 YPELSLRDARQRRDEARSLVAQGIDPRGQHRADR-----KTVSVEETFRHVAEQWLELKQ 110 Query: 23662 XXXXXXXXXXXXXSLRSAMEKHMLPSLRTHRVSGVFASNVLPLLTAISDVGHNRQAVEML 23841 R ++ + P+L + + ++ ++ AI G Sbjct: 111 GRWADDSRKGSANQARRVLDNDLYPALANMKFREIHRRDLAAVVGAIERRG--------- 161 Query: 23842 ITIQQMIRWGERSQPWKRLLIDCDVLALAKEDVVSADYDPVRGNERNRTLTDDEIRLLGE 24021 + E+++ W R + + A +ED ++D D + E+ T + + GE Sbjct: 162 -----ALHVAEKARSWLRQIFRVGIAAGLREDNPASDLD-ILAKEQPPTEHNPILAHDGE 215 Query: 24022 LIPA--ARLPRSIES------AVWVMLACGTRVGETLPTRWTDLDFKARTWTIPKERTKS 24177 +PA RL RS + AV +ML R E D D + WT+P R K Sbjct: 216 ELPALLVRL-RSYQGSEITRIAVRLMLLTAVRTIELRKAAPADFDLEKGIWTVPPGRVK- 273 Query: 24178 NAAITIHLSDFVLAQFAAQQVVRAGMPEGDARREYVFPSEKGKLPHV-SISTACG----A 24342 Q+ +G+ Y+ P + + V + G A Sbjct: 274 -------------------QLRGKVRKDGEEVPPYIVPLSRQAIEEVRGLLQKTGKYPFA 314 Query: 24343 IHDRQRPKDAPTEGRTRATDALTVPGGQWKCHDLRRTCATMMQSLGIAESIVHRCLNHAR 24522 R P +E G H LR T +T + +G +++ L+HA Sbjct: 315 FAGRNDPTKMMSENTINQAIKRLGFDGLLTGHGLRGTFSTALHEMGYDTTLIEGQLSHAD 374 Query: 24523 NDPLDRIYLRFDYDARRMAAM 24585 + Y + RR A M Sbjct: 375 PNKTRAAYNHAAHVERRRAMM 395 >ref|NP_612994.1|hypothetical protein Length = 348 Score = 55.5 bits (132), Expect = 2e-06 Identities = 62/223 (27%), Positives = 92/223 (41%), Gaps = 22/223 (9%) Frame = +2 Query: 187583 AVNLASALRSLHSRGLTHNDIRPGNILIDDATHAIALTGLGLVSRAPRERPRDGPPAIAV 187762 ++ S L +HS+GL H DI+P NI+I + A+ L+ GL S+ E R P Sbjct: 113 SIQFLSGLYHIHSKGLMHFDIKPNNIMISNRNEAM-LSDFGL-SQLVNEESRAAPEFGYH 170 Query: 187763 EALPYLSPERTGLMNRWSDSRADLYSLGVVLYEMMTGKLPYR----AASAAEWLHCHTAQ 187930 +P PE L + D+Y G+ +Y M G + A S E L Sbjct: 171 FHVP---PEYFSLSTNDYNFTYDIYQAGLTIYRMCVGHDNFERERSAFSTIEQLRESIIN 227 Query: 187931 VPIPVAECIDGVPAQLSAIVARLLSKDAAQRYQTAAGLEHDLRRCLDA---WR------T 188083 P+ E + +L IV + + D +RYQ+ + +DL D WR T Sbjct: 228 GCYPLKEYPPHIHKKLITIVNKCIHVDPNERYQSVLDVLNDLSAISDGVLDWRLQMTKPT 287 Query: 188084 SGDVE-------AFAPGAADAPDQLQRPFRLY--GRQKQQHKL 188185 +G E A DA + FRLY GR+++ L Sbjct: 288 NGTCEWQKKSGDAILSIVFDAENSSTTGFRLYDDGRKRRATNL 330 >ref|NP_049482.1|serine Length = 348 Score = 55.5 bits (132), Expect = 2e-06 Identities = 62/223 (27%), Positives = 92/223 (41%), Gaps = 22/223 (9%) Frame = +2 Query: 187583 AVNLASALRSLHSRGLTHNDIRPGNILIDDATHAIALTGLGLVSRAPRERPRDGPPAIAV 187762 ++ S L +HS+GL H DI+P NI+I + A+ L+ GL S+ E R P Sbjct: 113 SIQFLSGLYHIHSKGLMHFDIKPNNIMISNRNEAM-LSDFGL-SQLVNEESRAAPEFGYH 170 Query: 187763 EALPYLSPERTGLMNRWSDSRADLYSLGVVLYEMMTGKLPYR----AASAAEWLHCHTAQ 187930 +P PE L + D+Y G+ +Y M G + A S E L Sbjct: 171 FHVP---PEYFSLSTNDYNFTYDIYQAGLTIYRMCVGHDNFERERSAFSTIEQLRESIIN 227 Query: 187931 VPIPVAECIDGVPAQLSAIVARLLSKDAAQRYQTAAGLEHDLRRCLDA---WR------T 188083 P+ E + +L IV + + D +RYQ+ + +DL D WR T Sbjct: 228 GCYPLKEYPPHIHKKLITIVNKCIHVDPNERYQSVLDVLNDLSAISDGVLDWRLQMTKPT 287 Query: 188084 SGDVE-------AFAPGAADAPDQLQRPFRLY--GRQKQQHKL 188185 +G E A DA + FRLY GR+++ L Sbjct: 288 NGTCEWQKKSGDAILSIVFDAENSSTTGFRLYDDGRKRRATNL 330 >ref|NP_848235.1|integrase Length = 416 Score = 51.6 bits (122), Expect = 3e-05 Identities = 51/203 (25%), Positives = 86/203 (42%) Frame = +1 Query: 23977 RNRTLTDDEIRLLGELIPAARLPRSIESAVWVMLACGTRVGETLPTRWTDLDFKARTWTI 24156 R+RTL +EI + + +++ A+ ++L R E + W+++DFK TW I Sbjct: 200 RDRTLQPEEIGVFFRALDHIGTMATMKLALKLVLLTLVRKSEFTHSTWSEVDFKKWTWII 259 Query: 24157 PKERTKSNAAITIHLSDFVLAQFAAQQVVRAGMPEGDARREYVFPSEKGKLPHVSISTAC 24336 P +R K + A I+L Q+ G EY+ P VS + Sbjct: 260 PSDRMKGSRAHVIYLPKQAQDLMVGLQMCAGGS-------EYLLPGRYS----VSKPLSN 308 Query: 24337 GAIHDRQRPKDAPTEGRTRATDALTVPGGQWKCHDLRRTCATMMQSLGIAESIVHRCLNH 24516 A++ R + E A L + HDLRRT +T++ G + + L H Sbjct: 309 AALN---RLINVTVESVNDAGGYLD----NFSVHDLRRTASTLLHEAGYPSDWIEKALAH 361 Query: 24517 ARNDPLDRIYLRFDYDARRMAAM 24585 + + +Y + +Y AR+ A M Sbjct: 362 EQKG-VRAVYNKAEY-ARQRAYM 382 >ref|NP_818239.1|gp188 Length = 318 Score = 49.3 bits (116), Expect = 2e-04 Identities = 65/265 (24%), Positives = 104/265 (39%), Gaps = 25/265 (9%) Frame = -1 Query: 97789 RQLEDTIAFHGQQTIAAFVAEPVQGAGGLIVPPASYWARVRNVCDRHGILL--------- 97637 R+L D++ ++ AE + AG + W+ V ++ DR G L+ Sbjct: 71 RKLIDSLERPDADSLRVLYAEGGRDAGAVAFTQFPNWSLV-SLIDREGRLVAPEVVLDEV 129 Query: 97636 ----------IADEVVTGFGRTGSMLGSRGWGVAADILCVAKGISAGYVPLGATLYNGRI 97487 +ADE TGFGR G + G + +G D + + G + G + LG + + Sbjct: 130 DRATKSGRTVVADESATGFGRLGRIWGHQAYGFTPDAI-IFGGPAGGGLTLGGVIGPAEL 188 Query: 97486 AQAIEHGAGFSHVVMHGYTYSGHPLACAASLAVLDIVEAEDLPGNAARMGQRLLEQLLPL 97307 G +G PLACA A L + E L + G E+L L Sbjct: 189 LDDAFVG-----------PMAGAPLACATGAATLAAINPE-LLEHVREEGVTFGERLRAL 236 Query: 97306 TRDF-ETVGDVRGKGLMLALDLVTDKASRTPLDPGKGFAARVADAARKRGVLVR-AIANK 97133 F + + D G GL LD R+P A + + R+ G+L + + Sbjct: 237 VDRFGDYLADTAGSGLYHTLDF------RSP-----QLARKFEVSTRQHGLLTAPPVGST 285 Query: 97132 IVMSPPLTLQPKE----TDLIAHAL 97070 +V++P L +E +LIA L Sbjct: 286 VVVTPTLIASERELARGVELIAETL 310 >ref|NP_958192.1|gene 16 protein Length = 385 Score = 48.1 bits (113), Expect = 4e-04 Identities = 69/309 (22%), Positives = 116/309 (37%), Gaps = 4/309 (1%) Frame = +1 Query: 23302 LTVRQIEAARATGKRYFLSDGRGLFLRVGPVGGKTWFVRVSINGK*LDKPLGKAWARSTT 23481 LTV+QIEAA+ K Y L DG GL+L V G K W +R I+GK +GK Sbjct: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKY------ 55 Query: 23482 DAQLSLEDXXXXXXXXXXXXXDGMDYLEAKKRERQAKVAKAAMADLTFGDLFDAWFATIN 23661 ++L++ G+D ++AK KA+ + +F ++ W+ Sbjct: 56 -PLMTLQEARDKAWTARKDISVGIDPVKAK---------KASSNNNSFSAIYKEWY---- 101 Query: 23662 XXXXXXXXXXXXXSLRSAMEKHMLPSLRTHRVSGVFASNVLPLLTAISDVGHNRQAVEML 23841 L + +LP + + + +L ++ D G +A + Sbjct: 102 DHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKAR 161 Query: 23842 ITIQQMIRWGERSQPWKRLLIDCDVLALAKEDVVSADYDPVRGNERNR--TLTDDEIRLL 24015 ++ R+ V AK + D ++G + L D+I Sbjct: 162 RRCGEVFRY-------------AIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAF 208 Query: 24016 GELIPAARLPRSIES--AVWVMLACGTRVGETLPTRWTDLDFKARTWTIPKERTKSNAAI 24189 + + A SI S A V+ R E +W ++DF+ R TI K Sbjct: 209 NKAL--ATFSGSIVSLIATKVLRYTALRTKELRSMQWKNVDFENRIITIDASVMKGRKIH 266 Query: 24190 TIHLSDFVL 24216 + +SD V+ Sbjct: 267 VVPMSDQVI 275 >ref|NP_835600.1|putative glycosyltransferases Length = 484 Score = 45.4 bits (106), Expect = 0.002 Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 11/134 (8%) Frame = -3 Query: 242516 DAFVVLQLGRLVPRKGIDNVIDALARMPRDPQRPTHLYIVGGSQATPDPARDPE-LARLM 242340 D+ + L R + RK + + I A R HL I+ P P LA + Sbjct: 204 DSVIWLYNNRNISRKNLMDTIYAFLVYMLKNYRKHHLLIIKSDPVVPVGTDIPAFLADIN 263 Query: 242339 ALAH--DNGIADRVTFVGRRE--------REALHLCYSAADVFVTTPWYEPFGITPVEAM 242190 + H D + + + F+ E RE + L Y+ ADV + E FGI +EA Sbjct: 264 SFFHYRDIDLREHIVFISNDEVFHNGGFSREEIALLYNGADVVLQLSSNEGFGIASLEAS 323 Query: 242189 ACAAAVIGSDVGGI 242148 C A V+ + GGI Sbjct: 324 LCGAPVVATMTGGI 337 >ref|NP_620626.1|putative transposase Length = 362 Score = 44.3 bits (103), Expect = 0.006 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 12/100 (12%) Frame = -1 Query: 61468 TDNGSAYIDHRTRS------------FARELGLEPLTTPVRSPQSNGMAESFVKTMKHNY 61325 TDNGS +I++ + F + + TTPVRSPQSNG E F + + Sbjct: 255 TDNGSEFINNYRNNQKISVKKTNFTQFLTDKNILHQTTPVRSPQSNGKIERFHQNYTKLF 314 Query: 61324 VAYMDKPDAPTALSRLAIAFEHYNERHPHKALKYRSPREF 61205 V +A + ++L + YN HK+L +++P F Sbjct: 315 VFEEKILNAVSLQNKLNDYYYFYNFERVHKSLNFQTPFNF 354 >ref|NP_112034.1|integrase Length = 385 Score = 44.3 bits (103), Expect = 0.006 Identities = 67/309 (21%), Positives = 114/309 (36%), Gaps = 4/309 (1%) Frame = +1 Query: 23302 LTVRQIEAARATGKRYFLSDGRGLFLRVGPVGGKTWFVRVSINGK*LDKPLGKAWARSTT 23481 LTV+QIEAA+ K Y L D GL+L V G K W +R I+GK +GK Sbjct: 2 LTVKQIEAAKPKEKPYRLLDSNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKY------ 55 Query: 23482 DAQLSLEDXXXXXXXXXXXXXDGMDYLEAKKRERQAKVAKAAMADLTFGDLFDAWFATIN 23661 ++L++ G+D ++AK KA + +F ++ W+ Sbjct: 56 -PLMTLQEARDKAWAARKDISVGIDPVKAK---------KAPSNNNSFSAIYKEWY---- 101 Query: 23662 XXXXXXXXXXXXXSLRSAMEKHMLPSLRTHRVSGVFASNVLPLLTAISDVGHNRQAVEML 23841 L + +LP + + + +L ++ D G +A + Sbjct: 102 EHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKAR 161 Query: 23842 ITIQQMIRWGERSQPWKRLLIDCDVLALAKEDVVSADYDPVRGNERNR--TLTDDEIRLL 24015 ++ R+ V AK + D ++G + L D+I Sbjct: 162 RRCGEVFRY-------------AIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAF 208 Query: 24016 GELIPAARLPRSIES--AVWVMLACGTRVGETLPTRWTDLDFKARTWTIPKERTKSNAAI 24189 + + A SI S A ++ R E +W ++DF+ R TI K Sbjct: 209 NKAL--ATFSGSIVSLIATKILRYTALRTKELRSMQWKNVDFENRIITIDASVMKGRKIH 266 Query: 24190 TIHLSDFVL 24216 + +SD V+ Sbjct: 267 VVPMSDQVV 275 >ref|NP_536385.1|conserved hypothetical protein Length = 186 Score = 43.1 bits (100), Expect = 0.012 Identities = 22/37 (59%), Positives = 28/37 (75%), Gaps = 1/37 (2%) Frame = +3 Query: 35397 YPILDVKVR-SMTFDGRPVATEGNKMASSASLIASQG 35504 YPI+ VK +MTF RP+AT+G+K A A+LIASQG Sbjct: 48 YPIVSVKRELNMTFGDRPIATDGDKTACGATLIASQG 84 >ref|NP_945059.1|gp28 Length = 186 Score = 43.1 bits (100), Expect = 0.012 Identities = 22/37 (59%), Positives = 28/37 (75%), Gaps = 1/37 (2%) Frame = +3 Query: 35397 YPILDVKVR-SMTFDGRPVATEGNKMASSASLIASQG 35504 YPI+ VK +MTF RP+AT+G+K A A+LIASQG Sbjct: 48 YPIVSVKRELNMTFGDRPIATDGDKTACGATLIASQG 84 >ref|NP_542261.1|unknown Length = 433 Score = 41.6 bits (96), Expect = 0.036 Identities = 73/302 (24%), Positives = 110/302 (36%), Gaps = 8/302 (2%) Frame = +1 Query: 23293 MGALTVRQIEAARATGKRYFLSDGRGLFLRVGPVGGKTWFVRVSINGK*LDKPLGKAWAR 23472 M ALT +QI+ A+ K Y L+DG GL L V G K+W +R +GK +G Sbjct: 1 MSALTDKQIKNAKKADKDYKLADGGGLNLFVLSTGTKSWRLRYRFDGKEKTLVIGNY--- 57 Query: 23473 STTDAQLSLEDXXXXXXXXXXXXXDGMDYLEAKKRERQAKVAKAAMADLTFGDLFDAWFA 23652 +SL D G D KK E+ + K AD TF L W Sbjct: 58 ----PDVSLADARGEREAAKETLKSGRDPNVVKKIEK--AIGKQQAAD-TFEVLAREW-- 108 Query: 23653 TINXXXXXXXXXXXXXSLRSAMEKHMLPSLRTHRVSGVFASNVLPLLTAISDVGHNRQAV 23832 + + ++ + P + + + A VL +L + R A Sbjct: 109 --HKLQKPTWVEKHASDVLDSLVNDVFPIIGQMPIRDIDAPTVLGVLRLV----EQRDAK 162 Query: 23833 EMLITIQQMIRWGERSQPWKRLLIDCDVLALAKED---VVSADYDPVRGNERNRTLTDDE 24003 E I+Q I + + A ED VV P++ + D+ Sbjct: 163 ETARRIRQRI---------SAIFVYGIASGRASEDPAAVVRGAMAPMKKGRQPAITNLDK 213 Query: 24004 IRLLGELIPAARLPRSIESAVWVMLACGT--RVGETLPTRWTDLDFKART---WTIPKER 24168 R + L+ + P + + + L T R G + T WT+LD + W IP R Sbjct: 214 AREM--LVATWKTPSHPVTKLGLRLLTLTAVRPGTLISTPWTELDEVDESDPVWVIPAAR 271 Query: 24169 TK 24174 K Sbjct: 272 MK 273 >ref|NP_061549.1|Orf53 Length = 354 Score = 41.6 bits (96), Expect = 0.036 Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 3/156 (1%) Frame = -1 Query: 188995 AVAIEREEALVGEKLQ-KLHDVERIAARAFEHETAQALQFGPRGREGVADQMRHVVRL-- 188825 A+A RE + EK + + ++ER+ A A E + E +A + RL Sbjct: 172 ALAALREALVAREKYEAEQAELERLRAEAAAREQKER-------EERIAREAAEAERLAA 224 Query: 188824 QRRQHDFVDARARLPDEIDCASERMRDAHFVVAIRADHEHVARARPAQLFEHAERARVAP 188645 +RR + DA AR E A+ER + A +A+ E + + A+ E + R Sbjct: 225 ERRAQEERDATARREAEAKAAAERRELELRLAAEKAEREKLEAQQRAEQAERDAQRRAEE 284 Query: 188644 LQVVEKQHERLAVARERRDETRKHGEKAHACFLRRE 188537 E+Q + AR R+ + +KAH + E Sbjct: 285 ATAAERQRQADEQARIEREAAARESDKAHKKAINNE 320 >ref|NP_061531.1|integrase Length = 369 Score = 40.0 bits (92), Expect = 0.10 Identities = 45/194 (23%), Positives = 72/194 (37%), Gaps = 6/194 (3%) Frame = +1 Query: 23956 DPVRGNE------RNRTLTDDEIRLLGELIPAARLPRSIESAVWVMLACGTRVGETLPTR 24117 +PV+G + R+R LT E+ L + +E + + + G R E L Sbjct: 146 NPVKGRKMREAEGRDRWLTRAEVEALCRAARGQKFGPMLEDFIRLAVNTGCRREEMLGLE 205 Query: 24118 WTDLDFKARTWTIPKERTKSNAAITIHLSDFVLAQFAAQQVVRAGMPEGDARREYVFPSE 24297 W +DF R + TK+ +I +++ +A + R+ E +VF Sbjct: 206 WRRVDFANRLIYLEASHTKAGKRRSIPINEGAMAALKRRMAFRS---ETSPECPWVFARA 262 Query: 24298 KGKLPHVSISTACGAIHDRQRPKDAPTEGRTRATDALTVPGGQWKCHDLRRTCATMMQSL 24477 G IS + G Q K A + HDLR TCA + S Sbjct: 263 NGDRV---ISLSAGFKQACQAAKIA-----------------DFTIHDLRHTCAAWLVSA 302 Query: 24478 GIAESIVHRCLNHA 24519 G+ + V L H+ Sbjct: 303 GVPLADVRDLLGHS 316 >ref|NP_818386.1|gp85 Length = 424 Score = 40.0 bits (92), Expect = 0.10 Identities = 50/194 (25%), Positives = 74/194 (38%), Gaps = 9/194 (4%) Frame = +1 Query: 23965 RGNERNRTLTDDEIRLLGELIPAARLPRSIESAVWVMLACGTRVGETLPTRWTDLDFKAR 24144 R N R R LT +++ AA + R E ++ CG R E R D F+ R Sbjct: 213 RKNTRQRYLTHKQLQEF-----AAEMGR-FEGLTLLLGYCGARTSEAFGARGRD--FRGR 264 Query: 24145 TWTI-------PKERTKSNAAITIHLSDFVLAQFAAQQVVRAGMPEGDARREYVFPSEKG 24303 W + ++ TK++ A I + D V ++ P+ VFP +G Sbjct: 265 IWELYGAIVRNVEKDTKTHRARFIPIPDVVW-----NKIQMPANPDA-----LVFPGRRG 314 Query: 24304 KLPHVSISTAC-GAIHDRQRPKDAPTEGRTRATDALTVPG-GQWKCHDLRRTCATMMQSL 24477 + + A GA+ Q + T T P + HDLR TCA++ S Sbjct: 315 HITNGEYRWAFDGALRTMQERTEKLRAEEIAETGRATTPAFPRITPHDLRHTCASLAISS 374 Query: 24478 GIAESIVHRCLNHA 24519 G V L HA Sbjct: 375 GANVKAVQNLLGHA 388 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 38.1 bits (87), Expect = 0.40 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Frame = -2 Query: 69864 PVEQALRARQRERGEPGHARRAVDEAQPFLRAERERLAPDAPQRVAAADALASMARVAVA 69685 P+EQAL AR RER + G RAV EA A + P R D + R+ A Sbjct: 217 PIEQALFARARER-DSGETTRAVQEAVDTWAARNFSMPPGMLAR--QVDVVREQGRLKAA 273 Query: 69684 DAHERHVRHVGQIADR--AVRR 69625 ++ RH G + +R A+RR Sbjct: 274 ESEPRHPGASGHLGNREPALRR 295 >ref|YP_164067.1|large terminase subunit Length = 486 Score = 38.1 bits (87), Expect = 0.40 Identities = 19/41 (46%), Positives = 24/41 (58%) Frame = +3 Query: 182217 LASAPDPGAGKRGGSLLDSFKVLRDPRVWRLCQYYSIAFGG 182339 ++S PD AGKRGG +LD F + DPR Y I +GG Sbjct: 122 MSSNPDAQAGKRGGRILDEFALHPDPRKLWSIAYPGITWGG 162 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,017,548,343 Number of Sequences: 14420 Number of extensions: 19482125 Number of successful extensions: 72846 Number of sequences better than 0.5: 31 Number of HSP's better than 0.5 without gapping: 11778 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 72673 length of database: 3,019,461 effective HSP length: 127 effective length of database: 1,188,121 effective search space used: 107271880727 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig194 (267,387 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061653.1|transposase 141 3e-32 ref|NP_899369.1|GTP cyclohydrolase I 98 4e-19 ref|NP_945089.1|gp58 89 1e-16 ref|NP_958229.1|gene 55 protein 74 8e-12 ref|NP_817767.1|gp6 73 1e-11 ref|NP_046572.1|ABC transporter 73 1e-11 ref|NP_040341.1|putative transposase 69 2e-10 ref|NP_042036.1|DNA primase 58 5e-07 ref|NP_818403.1|gp105 52 2e-05 ref|NP_859396.1|hypothetical protein 51 6e-05 ref|NP_919008.1|conserved hypothetical protein 49 3e-04 ref|NP_042041.1|transcriptional regulator 49 3e-04 ref|NP_958698.1|Bbp29 46 0.001 ref|NP_996591.1|primase 46 0.001 ref|NP_996639.1|primase 46 0.001 ref|NP_536395.1|ISBt3 transposase subunit protein 46 0.002 ref|NP_665964.1|putative plasmid partitioning protein Soj 42 0.036 ref|YP_025041.1|putative transposase B 41 0.061 ref|NP_599056.1|bactoprenol glucosyltransferase 40 0.10 ref|NP_861819.1|NudE nudix hydrolase 40 0.10 ref|NP_490635.1|hypothetical protein 39 0.18 >ref|NP_061653.1|transposase Length = 328 Score = 141 bits (356), Expect = 3e-32 Identities = 103/322 (31%), Positives = 150/322 (46%), Gaps = 2/322 (0%) Frame = +2 Query: 253946 YQHLSAEERATIMILLQQGCSARGIARTLRRSPSTITREIRRALQWPQRTAFVPAGSGGC 254125 Y HL+ ERA I +L Q+ S R IAR L+RS STI+REI R A + Sbjct: 16 YNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISRN----NLNQSYQAETAQK 71 Query: 254126 TYDXXXXXXXXXXXXLKRRRHPKLAEDGVLFGVVHHFLLEGWSPSQIAGTLKRMWPDDLD 254305 Y+ R P+L ++ ++L WSP QI G L L Sbjct: 72 NYETKRKLCGRPT-----RFTPELGN------IIKYYLKCHWSPEQIVGRL-------LQ 113 Query: 254306 RRVSHETIYNCIYAMPRGELRKELIACLRRAQAKRMPRSRGQDRRGQLPDAVSIHLRPPE 254485 ++ +TIY I + + ELI+CLR+ ++ P+ + RG+ I RP E Sbjct: 114 NQICFKTIYRWINS---NMINFELISCLRQKGKRQKPK----ETRGKFNIGRPISQRPKE 166 Query: 254486 ANERAFPGHWEGDLLKGAANRS--AXXXXXXXXXXXXXXAKLKDATAASALEGFTAKLRS 254659 +R GHWE D + + +S + D ++ S ++ Sbjct: 167 IKKRNTFGHWEADTIVSSRGKSKGCIATFAERKSRYYYCVLMPDRSSNSMETAINNLIKH 226 Query: 254660 IAEPMRKTLTYDRGKEMARHPELSEATGIRVYFCDPRSPWQRGSCENINGLLRQYLPKGT 254839 + + KT+T DRGKE + + + I VYF DP S WQRG+ EN NGLLR++ PK T Sbjct: 227 LPKGAVKTITVDRGKEFSCYQNIENQFNINVYFADPYSAWQRGTNENTNGLLREFFPKKT 286 Query: 254840 DLSVYSQEELDAIADRLNSRPR 254905 DL+ +QE+L+ D +N RPR Sbjct: 287 DLAKVNQEQLNYALDSINYRPR 308 >ref|NP_899369.1|GTP cyclohydrolase I Length = 222 Score = 97.8 bits (242), Expect = 4e-19 Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 1/221 (0%) Frame = +2 Query: 98996 LSQLIRRRLEHAGARFHANDNIAAHLRDGELDALQSEVAQRMEAVLRSLVIDVDHDHNTR 99175 L Q + L G +N L D E A+ + R ++++L +D+ D + Sbjct: 11 LGQKVEAHLRKIGMHTPTVEN---GLTDDEKKAILED---RFTDIMQALGLDLSDD-SLV 63 Query: 99176 DTARRVAKMFVREVFAGRY-EAPPPVTEFPNVERLDELLIVGPLRVRSACSHHLCPIMGR 99352 DT +R AKM V E+ +G + P T N D+++ + V S C HH+ I G Sbjct: 64 DTPKRWAKMMVNELMSGLSPDMFPKCTAVDNKMNYDQMVCEKGITVLSQCEHHIVTIDGF 123 Query: 99353 IWIGVLPSATSNLIGLSKYGRLVNWVMARPQIQEEAVKQIADLLERRIAPDGLAVVLEAD 99532 + +P + ++GLSK R+V + RPQIQE QIA+ L+ + + +AV+++A Sbjct: 124 ATVAYIPK--NKVLGLSKMNRIVEYFARRPQIQERLTVQIAEALKFILETEDVAVLIDAK 181 Query: 99533 HFCMHWRGTKDDQAKMTNSVMRGKFLADASLRREFLALLSG 99655 H+C+ RG +D+ + S + G F + R EF++L G Sbjct: 182 HYCVKARGVEDNNSSTVTSHLSGAFRNEPEARAEFMSLARG 222 >ref|NP_945089.1|gp58 Length = 297 Score = 89.4 bits (220), Expect = 1e-16 Identities = 85/297 (28%), Positives = 124/297 (41%), Gaps = 9/297 (3%) Frame = -1 Query: 77868 LPPLNALRAFDAVARHGSFAGAAVELHVTHWAVGKQIRLLEDWFGRPLFDRRPRGVVLTD 77689 LPPL L FDA ARHG+F AA EL+V AV KQ+ LE + G LF R + + LT Sbjct: 6 LPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTR 65 Query: 77688 DGAALLGDVSSAFERLGTAAVRLRQHASTQRISGVVRVNVPMSFAFCWLLPRLADFHARY 77509 G V + A + + + ++ + A +L R+A+F A + Sbjct: 66 AGQQYADRVHAILADCVEATALVMKEQTPHSLT----IACASGTATLFLADRIAEFSAEH 121 Query: 77508 PDIDVRVSTTSRKLRYVADAFDIGV---RSGAEEGASVVSRSLMADLRVPACDPALL--R 77344 P++ VR+ A FDIGV R G + +++A+ C P L R Sbjct: 122 PEVSVRILVREGVFNLNAAEFDIGVYYIRDVPPPG--IAGTAIVAEDVHAYCAPTFLAGR 179 Query: 77343 QHPIQSVTDLRHHTLLHSATTRSAWSHWLK----XXXXXXXXXARHVEFDHVNLQLCAAV 77176 + P Q DL TLL + + W W AR + + + L A+ Sbjct: 180 RVPPQ---DLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLAL 236 Query: 77175 EGLGVALASLPLIGRDLAEGRLVCPLAAPIWRADDYMLVTNADRGADPAVAAFEQWI 77005 G G L +I + G+LV A Y ++ ADR PAV F +W+ Sbjct: 237 HGHGAILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWL 293 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 73.6 bits (179), Expect = 8e-12 Identities = 45/107 (42%), Positives = 59/107 (55%), Gaps = 1/107 (0%) Frame = +2 Query: 76649 GYRALDVGRHRTYEVIDQIGASESVELICAVFDVSRSCLYAHRGRARRVDAERMALRSRV 76828 GYRALDV + +I ++ A V +C VF V RS + R + D R LRS+V Sbjct: 4 GYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQV 63 Query: 76829 RELFIESRSSAGSRSIMGMMREEGTTIVRFKVSRLMEELGLI-CKQP 76966 EL S SAG+RSI M G + R+ RLM+ELGL+ C+QP Sbjct: 64 LELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQP 110 Score = 46.2 bits (108), Expect = 0.001 Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 17/215 (7%) Frame = +1 Query: 144259 RLYREAGLAV----RRRRKRQGVMIEREQLALPG---------APNEVWSIDFLMDALSN 144399 RL +E GL R KR G E +A+P PN+VW D + + Sbjct: 97 RLMKELGLVSCQQPTHRYKRGG----HEHVAIPNYLERQFAVTEPNQVWCGD--VTYIWT 150 Query: 144400 GPRVKCLTVVDD-FTNEAVDIVVDHGISGLYVARVLDRAARFRGYPKAV--RTDQGPEFT 144570 G R L VV D F + V + + L+ A RG P V +DQG +T Sbjct: 151 GKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYT 210 Query: 144571 SRALDQRAYANGVTLKLIQAGKPTQNAYIESFNGMFRDECLNEHWFTTLAHARAVIAAWR 144750 SR Q + + + + G N+ +E F ++E + + + + A I + Sbjct: 211 SRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYI 270 Query: 144751 QD-YNEQRPHSALNYLAPSEFAAKHRATADAPAAF 144852 Y+ RPH L P+E ++ +++ A+F Sbjct: 271 VGYYSALRPHEYNGGLPPNESENRYWKNSNSVASF 305 >ref|NP_817767.1|gp6 Length = 191 Score = 72.8 bits (177), Expect = 1e-11 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 2/155 (1%) Frame = +2 Query: 99152 VDHDHNTRDTARRVAKMFVREVFAGRYEAPPPVTE--FPNVERLDELLIVGPLRVRSACS 99325 V D +T T R AK + ++ +G E P E F + ++++ G ++++S C+ Sbjct: 20 VPTDDHTEGTPLRSAKAW-SDILSGYREDPADHLEVTFSAPDDPGQVILAG-VQLQSMCA 77 Query: 99326 HHLCPIMGRIWIGVLPSATSNLIGLSKYGRLVNWVMARPQIQEEAVKQIADLLERRIAPD 99505 HHL P G + PS ++GLSK R+V R Q+QE D + R+ P Sbjct: 78 HHLLPFTGMATVAYRPSPGDRVVGLSKLSRVVQGYARRLQVQERIGADTVDAIMARLRPA 137 Query: 99506 GLAVVLEADHFCMHWRGTKDDQAKMTNSVMRGKFL 99610 G V++ A H CM RG ++ + T +G L Sbjct: 138 GAVVLITASHDCMRLRGAQEPHSATTTIASKGLVL 172 >ref|NP_046572.1|ABC transporter Length = 705 Score = 72.8 bits (177), Expect = 1e-11 Identities = 56/209 (26%), Positives = 102/209 (48%), Gaps = 8/209 (3%) Frame = -3 Query: 236722 VLHRIDLEVGPNEVVGVLGCNGAGKTTLVKAIMGLLPCVSGNVVFQGQSITGLRTHAIAR 236543 ++ I+L + + V ++G +G GK+T K++ L ++ G I H R Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRY-DHLSIR 556 Query: 236542 RGIGLVPQGRWIFPKLTVRENLIMGT----QAAGGGAILDEVFEYFPILKS----RLSQN 236387 + I + + ++F K T++ENL MG I+ + E+ L +LS+N Sbjct: 557 KRIVYIDENPFLF-KGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSEN 615 Query: 236386 GGTLSGGEQQVLAIARALCGRPKLLLLDEPSDGVQPNMVELIGEVIPTLCRRSQLAVLLV 236207 G LS G++Q LA+ARA+ +P++L+LDE + P+ +LI E + R ++L+ Sbjct: 616 GSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETL----HRMDCLIILI 671 Query: 236206 EQNLDLVLRSAQRCIVLKNGRLAHTGHVE 236120 N D + +V +N R+ + + E Sbjct: 672 THN-DPSNFKYNKKLVFRNNRIIESSYSE 699 >ref|NP_040341.1|putative transposase Length = 322 Score = 69.3 bits (168), Expect = 2e-10 Identities = 89/333 (26%), Positives = 143/333 (42%), Gaps = 13/333 (3%) Frame = +2 Query: 253946 YQHLSAEERATIMILL----------QQGCSARGIARTLRRSPSTITREIRRALQWPQRT 254095 Y HLS ++ + LL +Q SA IA+ L R STI REI+R + + Sbjct: 2 YSHLSFMDKVKLEQLLLSKIFLKKNGEQNISA--IAKYLNRHRSTILREIKRFKTIDEYS 59 Query: 254096 AFVPAGSGGCTYDXXXXXXXXXXXXLKRRRHPKLAEDGVLFGVVH-HFLLEGWSPSQIAG 254272 A+ S Y+ K + K E+ + F +H F + SPS++ Sbjct: 60 AYK---SDKMYYEKRK----------KNNKRFKFTEEQLNF--IHLRFNVYHDSPSELI- 103 Query: 254273 TLKRMWPDDLDRRVSHETIYNCIYAMPRGELRKELIACLRRAQAKRMPRSRGQDRRGQLP 254452 + + V +T+Y I G L++ L R K+ R D RG+L Sbjct: 104 -YRYFLKFKVKFPVCVKTLYKWIRLGFYGFLKQNL-----RHHGKKYKRKGKSDNRGKLT 157 Query: 254453 DAVSIHLRPPEANERAFPGHWEGDLLKGAANRSAXXXXXXXXXXXXXXAKLKDATAASAL 254632 D SI N+ + G E D + G ++SA KL++ TA Sbjct: 158 DFKSIW---DIDNKVSNVGWLEMDTVVGKDHKSAILVLVEQLSKKYFAIKLENHTAREVE 214 Query: 254633 EGFTAKL--RSIAEPMRKTLTYDRGKEMARHPELSEATGIRVYFCDPRSPWQRGSCENIN 254806 + F + ++ ++ +T DR KE ++ E+ +VYFCD SP Q+ E +N Sbjct: 215 KKFKDIIIKNNLIGKIKGIIT-DRRKEFSKWREMEIFAETQVYFCDAGSPQQKPLIEYMN 273 Query: 254807 GLLRQYLPKGTDLSVYSQEELDAIADRLNSRPR 254905 LR + PKGTD + SQ+++D + + +N + R Sbjct: 274 SELRHWFPKGTDFNKVSQKQIDWVVNVINDKLR 306 >ref|NP_042036.1|DNA primase Length = 777 Score = 57.8 bits (138), Expect = 5e-07 Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 2/102 (1%) Frame = -1 Query: 216141 LIVPV--GNGLISTLELIDEHGRKSSLAGGAKRGGYWTTEPRWIPASAPSRVLVAEGMAT 215968 L+VP+ +G + L+LI GRK +L GG RG T E + A R+ +AEG AT Sbjct: 162 LVVPLYDDSGELVNLQLISADGRKRTLKGGQVRGTCHTLEGQ---NQAGKRLWIAEGYAT 218 Query: 215967 ALAASRATGWFATAALSSGNLGLVAKSLREQYPAAELIVLGE 215842 AL TG ALSS NL +A R+++PA ++++ + Sbjct: 219 ALTVHHLTGETVMVALSSVNLLSLASLARQKHPACQIVLAAD 260 >ref|NP_818403.1|gp105 Length = 266 Score = 52.4 bits (124), Expect = 2e-05 Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 11/209 (5%) Frame = -2 Query: 105503 QVLDVYLPARVARDWPTEPNAGAPVVVFFYGGSWQSG-KRNDYLFVGEALASRGFVAVVP 105327 Q LD++LP E APV +F GG+W G +R + L +G++ V Sbjct: 25 QKLDIWLP---------ESPENAPVFMFIPGGAWTIGDRRGQGYAIMSHLVQQGWICVAI 75 Query: 105326 DYRTYPATTFPGFIDDXXXXXXXXXXXXXAFGGDPRRVFLMGHSAGAQIAALLATDGRYL 105147 DYRT P +P +D +GG + + G SAG +A+L L Sbjct: 76 DYRTAPKNHWPAPFEDVSAAFHWVRANIHQYGGGD-FLAVGGASAGGHMASL-------L 127 Query: 105146 AASEMRSSEIAGVIGLAGPYDFLP------LRDATLERIF----PDDQRAASQPIRFVRG 104997 ++ S+ V+ L G YD+ L + ++ + D S PI + Sbjct: 128 GLTDWSFSKPDAVVSLYGVYDWTSKSLDHWLINRYVQHVVVGRRDHDTLRISSPIHQIHR 187 Query: 104996 SEPPMWLAVAENDTVVEPGNTDRFARALQ 104910 PP + + D V +F + L+ Sbjct: 188 DAPPFLIIQGDCDLVTPQSGAKKFFKKLK 216 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 50.8 bits (120), Expect = 6e-05 Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 10/195 (5%) Frame = +1 Query: 144253 IYRLYREAGLAVRRRRKRQGVMIEREQLA---------LPGAPNEVWSIDFLMDALSNGP 144405 + RL GLA R K+ I R+ +A + P+++W DF + G Sbjct: 87 VARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQG- 145 Query: 144406 RVKCLTVVDDFTNEAVDIVVDHGISGLYVARVLDRAARFRGYPKAVR-TDQGPEFTSRAL 144582 V ++D F V V + +V L++A R + +D+G ++ S A Sbjct: 146 FVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAY 205 Query: 144583 DQRAYANGVTLKLIQAGKPTQNAYIESFNGMFRDECLNEHWFTTLAHARAVIAAWRQDYN 144762 +R G+ G NA ES NG+++ E ++ + A W YN Sbjct: 206 TERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYN 265 Query: 144763 EQRPHSALNYLAPSE 144807 +R L + P+E Sbjct: 266 NRRLLGRLGHTPPAE 280 >ref|NP_919008.1|conserved hypothetical protein Length = 719 Score = 48.5 bits (114), Expect = 3e-04 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 10/77 (12%) Frame = -1 Query: 216729 ERCASRGSPAMTTPYVHDV-------DRARAALAVIP-ADDYGTWVDMAFALKQGFG--D 216580 ER S G P+ DV D A L ++P ADDY TWV++ AL + + Sbjct: 220 ERSESGGEIDYDDPFAADVAKTDIGEDELHAKLLLVPDADDYETWVNVGMALFHQYDGHE 279 Query: 216579 EGFEIWDAWSRTAPNYN 216529 G E+W WS TA NY+ Sbjct: 280 RGLELWHEWSETADNYD 296 >ref|NP_042041.1|transcriptional regulator Length = 88 Score = 48.5 bits (114), Expect = 3e-04 Identities = 23/61 (37%), Positives = 37/61 (60%) Frame = -2 Query: 230810 IMSWNDDGARTILRRRQVEQCTGLSRSTIYKRMQEGTFPPAIALGGRMVGWRAADIEQFL 230631 +M D LR +V GLSRSTIY+ +++G FPP ++LGG+ V W +++ ++ Sbjct: 16 LMPLPDITQERFLRVPEVMHLCGLSRSTIYELIRKGEFPPQVSLGGKNVAWLHSEVTAWM 75 Query: 230630 A 230628 A Sbjct: 76 A 76 >ref|NP_958698.1|Bbp29 Length = 854 Score = 46.2 bits (108), Expect = 0.001 Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 8/114 (7%) Frame = -1 Query: 216774 CG*ARFC*TGAPGSRERCASRGSP------AMTTPYVHDVDRARAALAVIPADDYGTWVD 216613 CG AR GS+ R +P A P D+ AR +A + +DY TW+ Sbjct: 190 CGLAR-----VTGSKSRTGLTSAPEDDPLMAYEPPVGIDLAEARRLVAYVDNEDYDTWLK 244 Query: 216612 MAFALKQGF--GDEGFEIWDAWSRTAPNYNEXXXXXXXXXXXXSGGKTLATLFW 216457 + +L F E +WD WS TA NY G+ T W Sbjct: 245 VGMSLHHEFDGSGEALALWDEWSATASNYASSEDVARRWDSFGKSGRNPTTARW 298 >ref|NP_996591.1|primase Length = 854 Score = 46.2 bits (108), Expect = 0.001 Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 8/114 (7%) Frame = -1 Query: 216774 CG*ARFC*TGAPGSRERCASRGSP------AMTTPYVHDVDRARAALAVIPADDYGTWVD 216613 CG AR GS+ R +P A P D+ AR +A + +DY TW+ Sbjct: 190 CGLAR-----VTGSKSRTGLTSAPEDDPLMAYEPPVGIDLAEARRLVAYVDNEDYDTWLK 244 Query: 216612 MAFALKQGF--GDEGFEIWDAWSRTAPNYNEXXXXXXXXXXXXSGGKTLATLFW 216457 + +L F E +WD WS TA NY G+ T W Sbjct: 245 VGMSLHHEFDGSGEALALWDEWSATASNYASSEDVARRWDSFGKSGRNPTTARW 298 >ref|NP_996639.1|primase Length = 854 Score = 46.2 bits (108), Expect = 0.001 Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 8/114 (7%) Frame = -1 Query: 216774 CG*ARFC*TGAPGSRERCASRGSP------AMTTPYVHDVDRARAALAVIPADDYGTWVD 216613 CG AR GS+ R +P A P D+ AR +A + +DY TW+ Sbjct: 190 CGLAR-----VTGSKSRTGLTSAPEDDPLMAYEPPVGIDLAEARRLVAYVDNEDYDTWLK 244 Query: 216612 MAFALKQGF--GDEGFEIWDAWSRTAPNYNEXXXXXXXXXXXXSGGKTLATLFW 216457 + +L F E +WD WS TA NY G+ T W Sbjct: 245 VGMSLHHEFDGSGEALALWDEWSATASNYASSEDVARRWDSFGKSGRNPTTARW 298 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 45.8 bits (107), Expect = 0.002 Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 10/175 (5%) Frame = +1 Query: 144352 PNEVWSIDFLMDALSNGPRVKCLTVVDDFTNEAVDIVVDHGISGLYVARVLDRA--ARFR 144525 PN++W DF + G + V+D F V V ++ +V L++A AR Sbjct: 110 PNQLWVSDFTYVSTWQG-WLYVAFVIDVFARRIVGWRVSSSMTTDFVLDALEQALYARQP 168 Query: 144526 GYPKAV--RTDQGPEFTSRALDQRAYANGVTLKLIQAGKPTQNAYIESFNGMFRDECLNE 144699 G + +D+G ++ S +R G+ + G NA E+ NG+++ E ++ Sbjct: 169 GEDGTLIHHSDRGSQYVSIRYSERLAEAGIEPSVGSRGDSYDNALAETINGLYKTELIHR 228 Query: 144700 H--WFTTLAHARAVIAAWRQDYNEQRPHSALNYLAPSEFAAKH----RATADAPA 144846 W T + A + W YN R L Y+ P+E A + R AD A Sbjct: 229 RAPWKTRESVELATL-EWVAWYNHHRLMEPLGYIPPAEAEANYYRQLRNAADVSA 282 >ref|NP_665964.1|putative plasmid partitioning protein Soj Length = 256 Score = 41.6 bits (96), Expect = 0.036 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 5/84 (5%) Frame = -3 Query: 3379 KGGIGKSTTSQNTLAALTDLGQKILIVGCDPKADST-----RLILHAKAQDTILSLAAEA 3215 KGG GK+TT+ N AL LG +L++ DP+ +T + +D++ + E Sbjct: 9 KGGAGKTTTTLNVAGALNQLGNDVLVIDLDPQGHATEGLGFEDLYDDPERDSLFDVLPEL 68 Query: 3214 GSVEDLELEDVMKIGYKDIRCVES 3143 +++LE + + ++++ CV S Sbjct: 69 ERMDELE---QLVVEHQEVDCVPS 89 >ref|YP_025041.1|putative transposase B Length = 280 Score = 40.8 bits (94), Expect = 0.061 Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 4/153 (2%) Frame = +1 Query: 144355 NEVWSIDFLMDALSNGPRVKCLTVVDDFTNEAVDIVVDHGISGLYVARVLDRAARFRGYP 144534 N+ W+ D T++D + + + V + L+ A + R Sbjct: 114 NQKWTADMTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTIT 173 Query: 144535 K--AVRTDQGPEFTSRALDQRAYANGVTLKLIQAGKPTQNAYIESFNGMFRDECLNE-HW 144705 + TD G ++TS +QR + + G P NA +ESF+ + EC+ Sbjct: 174 GDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPV 233 Query: 144706 FTTLAHARAVIAAW-RQDYNEQRPHSALNYLAP 144801 F A AV+ + YN +R HS+L Y P Sbjct: 234 FEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTP 266 >ref|NP_599056.1|bactoprenol glucosyltransferase Length = 307 Score = 40.0 bits (92), Expect = 0.10 Identities = 57/220 (25%), Positives = 85/220 (38%), Gaps = 9/220 (4%) Frame = -3 Query: 48235 IVVPIYNHRDAIG------GTLARLAVHGLPILVVDDGSDAPTQQVLTALAARYAGTMTL 48074 +VVP++N +AI L + + I+ ++DGS T+ ++ ALA + Sbjct: 5 LVVPVFNEEEAIPVFYKTVREFQELKPYEVEIVFINDGSKDATESIINALAVS-DPLVVP 63 Query: 48073 LRLPANRGKGAAVMEGLRAARARGYRHAIQIDADGQHDTADVPKFVAAAQAEPDAVILGR 47894 L N GK A+ GL A I ID D Q +P + QA D V+ R Sbjct: 64 LSFTRNFGKEPALFAGLDHASGDA---VIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKR 120 Query: 47893 PRFDDSVPKARLYGRYLTHAWVWIETLSLDIP---DAMCGFRLYPVDAVCELIDAVPLPT 47723 D RL + T W + + P + + FRL + V + LP Sbjct: 121 ---SDRSTDGRL--KRKTAEWFYKLHNKISTPKIEENVGDFRLMSREVVENI---KLLPE 172 Query: 47722 RMAFDSEILVRLHWRGLAFRTIETRVIYPADGVSHFDVWR 47603 R F I L W G +E G+S F+ W+ Sbjct: 173 RNLFMKGI---LSWVGGQTDVVEYVRAERVAGISKFNGWK 209 >ref|NP_861819.1|NudE nudix hydrolase Length = 152 Score = 40.0 bits (92), Expect = 0.10 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 6/60 (10%) Frame = +2 Query: 150305 WTLPGGMIRRGESALEAAHRELQEETGLVGLDLAYF------FYVDGSAKRHHVFVAKLP 150466 W +P G + GES +EAA RE +EETG D A+ Y D K H+F+ +P Sbjct: 42 WDIPKGRVEPGESPIEAAIRECEEETGFTQYDPAFLKDLGEHHYSDN--KNIHLFLYTIP 99 >ref|NP_490635.1|hypothetical protein Length = 130 Score = 39.3 bits (90), Expect = 0.18 Identities = 35/113 (30%), Positives = 45/113 (39%), Gaps = 9/113 (7%) Frame = +3 Query: 162990 PHHHLRRREAVPAAAHLPDPFVGLAPDRREMLEQPPFEQPR--VVVGRQSVPARMVQRAE 163163 P HH R +VPA P F+ L P R L QP ++PR + GR + PAR+ + Sbjct: 13 PQHHAASRRSVPAGQRQPVSFLRLRPVVR-CLCQPSGQRPRGPTIHGRTTRPARLGRGLR 71 Query: 163164 HLAVHVELQLPGRRVAEAHRLRAFVAGQMRGLPL-------VRAPAAVRPVQH 163301 L G R+ R + LPL RAPA P H Sbjct: 72 ----WTRADLAGHRLGPGRRRGGLPDRHPQSLPLPDPGPLSARAPAQTAPPAH 120 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,030,401,273 Number of Sequences: 14420 Number of extensions: 19895162 Number of successful extensions: 72611 Number of sequences better than 0.5: 21 Number of HSP's better than 0.5 without gapping: 11785 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 72499 length of database: 3,019,461 effective HSP length: 127 effective length of database: 1,188,121 effective search space used: 105743957121 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig191 (264,914 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_932363.1|hypothetical protein 382 e-104 ref|NP_061653.1|transposase 141 3e-32 ref|NP_945089.1|gp58 114 3e-24 ref|NP_803663.1|ORF097 82 2e-14 ref|NP_046877.1|putative non-heme haloperoxidase 79 3e-13 ref|NP_817650.1|gp61 76 2e-12 ref|NP_040341.1|putative transposase 69 2e-10 ref|NP_046584.1|putative transglycosylase 63 1e-08 ref|NP_046572.1|ABC transporter 61 4e-08 ref|NP_046976.1|tail protein 54 5e-06 ref|NP_818239.1|gp188 52 3e-05 ref|NP_665977.1|putative proliferation cellular nuclear antigene 50 1e-04 ref|NP_835729.1|hypothetical protein 44 0.005 ref|NP_040700.1|hypothetical protein 43 0.012 ref|NP_958267.1|hypothetical protein 40 0.10 ref|YP_024936.1|gp16 39 0.23 ref|NP_899500.1|hypothetical protein 38 0.39 >ref|NP_932363.1|hypothetical protein Length = 389 Score = 382 bits (980), Expect = e-104 Identities = 213/389 (54%), Positives = 269/389 (69%), Gaps = 6/389 (1%) Frame = -1 Query: 119243 RDAPVRSAILKELERQQSQVELIASENIVSRAVLEAQGSVLTNKYAEGYPGKRYYGGCEF 119064 +D V+S I E RQ +V LIASEN VS V++AQGS+ TNKYAEGYPGKRYYGGC Sbjct: 2 QDKVVQSIIEDEAMRQYCEVCLIASENYVSDDVMKAQGSIFTNKYAEGYPGKRYYGGCVK 61 Query: 119063 ADEIEALAIERVKQIFNAGYANVQPHSGAQANGSVMLALAKPGDTVLGMSLDAGGHLTHG 118884 ADEIE LAIER K++F+ +ANVQPHSG+QAN +V AL KPGD+VL MSLD GGHLTHG Sbjct: 62 ADEIENLAIERAKELFSCNFANVQPHSGSQANQAVYQALLKPGDSVLAMSLDCGGHLTHG 121 Query: 118883 AKPALSGKWFNAVQYGVNRD-TMRIDYDQVEELAHQHKPTLLIAGFSAYPRALDFARFRA 118707 K SGK ++ YGV D T+ I+ VE++ L++ G+SAY ++ A + Sbjct: 122 HKANASGKIYDFHHYGVFSDGTININ-QVVEQIRTIPDLKLVVIGYSAYVGRINEATYAK 180 Query: 118706 IAD---SVGAKLMVDMAHIAGVIAAGRHANPVEH-AHVVTSTTHKTLRGPRGGFVLTNDE 118539 IAD S+GAKLMVDMAH AG +AA HANP++ A VVT+TTHKTLRGPRGG +LTND Sbjct: 181 IADAAHSIGAKLMVDMAHFAGFVAARLHANPLKWGADVVTTTTHKTLRGPRGGLILTNDA 240 Query: 118538 EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEVLHADFKTYIDRVLANAQALGEVLKAGG 118359 +IAKK+NSA+FPG+QGGPL+HVIA KAV FGE L D+ Y+ +V NA + E A G Sbjct: 241 DIAKKVNSAIFPGIQGGPLLHVIAAKAVCFGEALREDYVDYMIQVAHNASIMYETFDAAG 300 Query: 118358 VDLVTGGTDNHLLLVDLRPK-GLKGAPVEQALERAGITCNKNGIPFDTEKPTVTSGIRLG 118182 LV G T+NH +L++ GL G EQ LE+ GI NKN +P DT P TSGIR+G Sbjct: 301 HKLV-GFTENHQVLLNTYESFGLTGREAEQLLEKEGIIVNKNMLPNDTRSPVETSGIRIG 359 Query: 118181 TPAGTTRGFGVAEFREIGRLILEVFDALR 118095 +PA TTRG+ ++F +I I+ + + + Sbjct: 360 SPAMTTRGWVESDFYDITIKIMHILECAK 388 >ref|NP_061653.1|transposase Length = 328 Score = 141 bits (356), Expect = 3e-32 Identities = 103/322 (31%), Positives = 150/322 (46%), Gaps = 2/322 (0%) Frame = +2 Query: 181892 YQHLSAEERATIMILLQQGCSARGIARTLRRSPSTITREIRRALQWPQRTAFVPAGSGGC 182071 Y HL+ ERA I +L Q+ S R IAR L+RS STI+REI R A + Sbjct: 16 YNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISRN----NLNQSYQAETAQK 71 Query: 182072 TYDXXXXXXXXXXXXLKRRRHPKLAEDGVLFGVVHHFLLEGWSPSQIAGTLKRMWPDDLD 182251 Y+ R P+L ++ ++L WSP QI G L L Sbjct: 72 NYETKRKLCGRPT-----RFTPELGN------IIKYYLKCHWSPEQIVGRL-------LQ 113 Query: 182252 RRVSHETIYNCIYAMPRGELRKELIACLRRAQAKRMPRSRGQDRRGQLPDAVSIHLRPPE 182431 ++ +TIY I + + ELI+CLR+ ++ P+ + RG+ I RP E Sbjct: 114 NQICFKTIYRWINS---NMINFELISCLRQKGKRQKPK----ETRGKFNIGRPISQRPKE 166 Query: 182432 ANERAFPGHWEGDLLKGAANRS--AXXXXXXXXXXXXXXAKLKDATAASALEGFTAKLRS 182605 +R GHWE D + + +S + D ++ S ++ Sbjct: 167 IKKRNTFGHWEADTIVSSRGKSKGCIATFAERKSRYYYCVLMPDRSSNSMETAINNLIKH 226 Query: 182606 IAEPMRKTLTYDRGKEMARHPELSEATGIRVYFCDPRSPWQRGSCENINGLLRQYLPKGT 182785 + + KT+T DRGKE + + + I VYF DP S WQRG+ EN NGLLR++ PK T Sbjct: 227 LPKGAVKTITVDRGKEFSCYQNIENQFNINVYFADPYSAWQRGTNENTNGLLREFFPKKT 286 Query: 182786 DLSVYSQEELDAIADRLNSRPR 182851 DL+ +QE+L+ D +N RPR Sbjct: 287 DLAKVNQEQLNYALDSINYRPR 308 >ref|NP_945089.1|gp58 Length = 297 Score = 114 bits (286), Expect = 3e-24 Identities = 90/291 (30%), Positives = 128/291 (43%), Gaps = 3/291 (1%) Frame = +3 Query: 102825 KSESLPSMQALRAFESAARLQSFTAAARELGSTQPAVSQQVFQLEAELGVPLFERSPRGV 103004 K + LP +Q L F++AAR +FT AA EL Q AVS+QV +LE LG LF R + + Sbjct: 2 KIQPLPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKAL 61 Query: 103005 TLTNDGQCLYEAVRASXXXXXXXXXXXXXXXXHGALTIVTDVGFATYWLMPRLAGLKRVM 103184 LT GQ + V A +LTI G AT +L R+A Sbjct: 62 HLTRAGQQYADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEH 121 Query: 103185 PDVDVRVVTSQD-YDVQRDHADIAILF-GDGHWPSCTAARLFPEAVTPVCXXXXXXXXXX 103358 P+V VR++ + +++ DI + + D P + E V C Sbjct: 122 PEVSVRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRV 181 Query: 103359 XXRPEHLHALPLLHVQPTHPERWLSWAGWFD-AHGLDAPAAARGVTFNSYALVIHAALLG 103535 P+ L LL V +W+ W WF G AR ++ NSY +++ AL G Sbjct: 182 P--PQDLMEATLL-VAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHG 238 Query: 103536 EGVALGWSPLVDELVASGQLVKLVDAPVVTSRGYFLVRPPQRPETDATHVF 103688 G LGW ++ LV SG+LV DA Y ++ P R +T A +F Sbjct: 239 HGAILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMF 289 Score = 63.2 bits (152), Expect = 1e-08 Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 5/178 (2%) Frame = -3 Query: 38034 IPSNSALMAFEXXXXXXXXXXXADELALTEGAISRQIGRLEAFLGVALFEXXXXXXXXXX 37855 +P L+ F+ A+EL + +GA+S+Q+ +LE FLG LF Sbjct: 6 LPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTR 65 Query: 37854 XXXRYAAQVREVL-DRLERDSQYLMGQAGDGGSIDIAVTPTFATRWLIPRLGGFQAEHPN 37678 +YA +V +L D +E + + Q S+ IA AT +L R+ F AEHP Sbjct: 66 AGQQYADRVHAILADCVEATALVMKEQTPH--SLTIACASGTATLFLADRIAEFSAEHPE 123 Query: 37677 ITVHLADRAEPFVLAGSGFDAAIHF----EHPAWAGMHTYRLCEEVLVPVCRPSLLAG 37516 ++V + R F L + FD +++ P AG T + E+V C P+ LAG Sbjct: 124 VSVRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAG--TAIVAEDVHA-YCAPTFLAG 178 Score = 59.7 bits (143), Expect = 1e-07 Identities = 76/297 (25%), Positives = 110/297 (37%), Gaps = 15/297 (5%) Frame = -2 Query: 254137 LRLIRVFLAVTDAGGVSAAQTMLNVGQSTISAQLSSLETRLGYRLCERGRSGFRLTPKGE 253958 L+ + F A G + A LNV Q +S Q+ LET LG L R LT G+ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 253957 RFHAMSRKLLAALDEFGMAARHMDRQLVGTLNIGLIGHTPVSQNARIAEAIAAFRTRDEA 253778 ++ +LA D A M Q +L I T +A+ IA F Sbjct: 69 QYADRVHAILA--DCVEATALVMKEQTPHSLTIACASGT---ATLFLADRIAEFSAEHPE 123 Query: 253777 VRFAISVRTPGDLEEKLLSNEIQIAVGYFWHR---VPSLHYTPLFVEHQIAYCGRGHPLF 253607 V I VR E N + +G ++ R P + T + E AYC P F Sbjct: 124 VSVRILVR-----EGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCA---PTF 175 Query: 253606 ERAGQLTPADVAEF----------EW-AWRS-YPLPEAHMSTTPDRVTATADNMEAVALL 253463 ++ P D+ E +W WR + L + P R T +A++ + L Sbjct: 176 LAGRRVPPQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPAR-TISANSYPVLLQL 234 Query: 253462 ILSGHHLGYLPQHFAAPYVAQGLLAPLNPEQLRYDVTFHMVVARDARGDPLVAAFLE 253292 L GH +H P V G L + + + ++ D R P V F E Sbjct: 235 ALHGHGAILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFRE 291 Score = 57.8 bits (138), Expect = 5e-07 Identities = 42/140 (30%), Positives = 69/140 (49%) Frame = +1 Query: 13015 YFLEVVNTGSVADAASRLNVVPSAVSRQIARLESELGTPLFVRRSRGMVPSKAGEMLAAY 13194 +F G+ AA LNV AVS+Q+ +LE+ LGT LFVR ++ + ++AG+ A Sbjct: 14 FFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA-- 71 Query: 13195 ARRSQLDAEQVSLEIDALRGEAERTIRIACTEGFAATFVPRAMAVFRRTVAPASFEVVVD 13374 R + A+ V ++ + ++ IAC G A F+ +A F S ++V Sbjct: 72 DRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILV- 130 Query: 13375 TAAGVTQRVREAECDVGLTF 13434 GV + AE D+G+ + Sbjct: 131 -REGVF-NLNAAEFDIGVYY 148 Score = 53.1 bits (126), Expect = 1e-05 Identities = 30/53 (56%), Positives = 35/53 (66%) Frame = -2 Query: 166276 LPPLTALQAFVAAAELGSFSRAAEHLCRTQGAVSRQVQQLEAYYRCALFVRHA 166118 LPPL L F AAA G+F+RAAE L QGAVS+QV +LE + LFVR A Sbjct: 6 LPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDA 58 Score = 46.6 bits (109), Expect = 0.001 Identities = 49/180 (27%), Positives = 76/180 (42%), Gaps = 2/180 (1%) Frame = +2 Query: 95765 FRAVMQRHTVTRAARDLHISQPAVSRLIADLEDRVGFVLFERQQGRFTPTAQARVLYEEV 95944 F A + TRAA +L+++Q AVS+ + LE +G LF R T + + V Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRV 74 Query: 95945 ERAFVGLDRVAQAAEQIRAMRRGTLRVAGSPAVALDLLPELVTRFSHAHPGVDITLLAHS 96124 D V A ++ +L +A + A L + + FS HP V + +L Sbjct: 75 HAILA--DCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILVRE 132 Query: 96125 ASTVVDKVASGQCDVGL-IAEPVPHPAVR-TERLAEGAMCCIVPRGHRLARKRVVRPADL 96298 V + + + D+G+ VP P + T +AE P LA +R V P DL Sbjct: 133 G---VFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPT--FLAGRR-VPPQDL 186 Score = 45.8 bits (107), Expect = 0.002 Identities = 30/115 (26%), Positives = 52/115 (45%) Frame = -2 Query: 53866 FVVIAEVRSLSRAAARVGRTQSALSQQMRRLEESVDQPLFQRTGRGVVLTHPGERLLLHA 53687 F A + +RAA + Q A+S+Q+ +LE + LF R + + LT G++ Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRV 74 Query: 53686 QRILRQHDEALADLCGTGLSGTIRFGCPDDYAQVWLPSLLRQFSSHHPHAIVEVV 53522 IL EA A + ++ C A ++L + +FS+ HP V ++ Sbjct: 75 HAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRIL 129 Score = 44.3 bits (103), Expect = 0.005 Identities = 54/240 (22%), Positives = 92/240 (38%), Gaps = 9/240 (3%) Frame = +1 Query: 257797 LVVIREVERQGSLTAAANALHLTQSALSHTVRKIEQQLGTPIWDREGRGLRLTQGGQYLL 257976 LV R G+ T AA L++ Q A+S V K+E LGT ++ R+ + L LT+ GQ Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71 Query: 257977 KLANRLLPQFELAEERMKQYAKGERGTLRIGMECHPCYQWLLKVVSPYLARWPDVDVDVK 258156 + +L + E + +L I +L ++ + A P+V V + Sbjct: 72 DRVHAILA--DCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRIL 129 Query: 258157 QRFQFGGIGALLGHDVDVLVTPDPLNKPGLRFDPVFDYEQVLVVADAHRLANADY----- 258321 R + A D+ V D + PG+ +V D H + Sbjct: 130 VREGVFNLNA-AEFDIGVYYIRD-VPPPGIA-------GTAIVAEDVHAYCAPTFLAGRR 180 Query: 258322 VTPEQLADEVLITYPVETDR----LDIYNQFLTPAAIVPRRHKSIETTDIMLQMVASGRG 258489 V P+ L + L+ + + D + + P R S + ++LQ+ G G Sbjct: 181 VPPQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHG 240 >ref|NP_803663.1|ORF097 Length = 816 Score = 82.4 bits (202), Expect = 2e-14 Identities = 121/492 (24%), Positives = 204/492 (41%), Gaps = 33/492 (6%) Frame = -3 Query: 187737 VEVDVESELIELVADDNPV--DVEVESDATELSVELRPVDNELIPVEVDVDSDVIELXXX 187564 VE DV S++ V DD+ + D++ ++DA+ ++NE + + D+ S Sbjct: 20 VEQDV-SKVETSVKDDHELVQDLKKDNDASAT------IENETVKTDTDIIS-------- 64 Query: 187563 XXXXXXXXDSETTELSVELRPVDNELIPVEVDVDSDVIELVADDRPVDVEVDSEATELSV 187384 ET + + + E++P E V+ + E +A VE EA +++ Sbjct: 65 -----AEEHEETAHAADKSAVIVEEVVPEETVVEESIPEPLAT---TSVEEGEEAVKVA- 115 Query: 187383 ELRPVDSELMPVEVDVESELIELVADDNPVDVEVESDATELSVELRPVDSELIPVEVDVD 187204 ++E+ E+ SE + V D +E DA + D+EL+PV Sbjct: 116 -----EAEIAE-EIGTISEGGKEVLDSTTEIIEAAQDAAD--------DTELVPVAEAPG 161 Query: 187203 NDEIELV-VDERPVDSELMPVEVEVDSELIELVADDNPVDVEVES------DATELSVEL 187045 +EL +E P+ E P + EL A D PV +++ DA E+ E Sbjct: 162 ETAVELTPTEETPLGDETPPPAPLSE----ELPAGDEPVSSTMDTLPDEVLDAGEVVSEA 217 Query: 187044 RP-VDNELMPVEVDVDSDVIELVADERPVDVEVDSEATELSVELRPVDSELMPVEVDVDS 186868 P +D+++ P E + + ++E P DVE+ +E E+ + P D ++ Sbjct: 218 VPGIDDDVTPEEAGAEQTTADESSNESP-DVEI-TETEEVDIT--------EPAVADAET 267 Query: 186867 DVIELVADDRPVDVEVDSETTELSVELRPVDSELIELVADERPVDV---------EVDSE 186715 +V+E V D +E E E P ++E E+VA + V V E Sbjct: 268 EVVETVEDTPDTTDSEVAEVVETESESIPAEAEPDEIVAVDEEVAVTDPIVEEAAETAEV 327 Query: 186714 ATELSVELRPVDSELMPVEVDVDSDEIELLVDERPVDSELMPVE--------------VE 186577 A E EL V E + DSD ++L++E + + E VE Sbjct: 328 AEEGLSELEEVRDEAEEELTNDDSDSTDVLINEAETEETVAETETASTIAEPTIEEGAVE 387 Query: 186576 VDSELIELVADDNPVDVEVDSDVNELSVELRPVDNELMPVEVDVESELIELVADDRPVDV 186397 DSE I ADD+ + +++ + E +++ VD E+ E DVE AD+ + Sbjct: 388 DDSETIVAEADDDVSEDDIEEKLAEGEIDIPDVDVEV--TEDDVEE------ADEAADEA 439 Query: 186396 DVESDATELSVE 186361 E+D E VE Sbjct: 440 VAEADDLEDEVE 451 Score = 69.3 bits (168), Expect = 2e-10 Identities = 110/422 (26%), Positives = 181/422 (42%), Gaps = 21/422 (4%) Frame = -3 Query: 188136 ELMPVEVEVDSDVIELVADDNPVDVE--VESDATELSVELRPVDNELIPVEVDVDSELIE 187963 E++P E V+ + E +A + + E V+ E++ E+ + V +D +E+IE Sbjct: 84 EVVPEETVVEESIPEPLATTSVEEGEEAVKVAEAEIAEEIGTISEGGKEV-LDSTTEIIE 142 Query: 187962 LVAD--DRPVDVDVESEATELSVELRPVDSELMPVEVEVDSDVIE-LVADDRPVDVDVES 187792 D D V V E +VEL P + + E + + E L A D PV +++ Sbjct: 143 AAQDAADDTELVPVAEAPGETAVELTPTEETPLGDETPPPAPLSEELPAGDEPVSSTMDT 202 Query: 187791 ------DATELSVELSP-VDSELMPVEVDVESELIELVADDNPVDVEV----ESDATELS 187645 DA E+ E P +D ++ P E E + ++++P DVE+ E D TE Sbjct: 203 LPDEVLDAGEVVSEAVPGIDDDVTPEEAGAEQTTADESSNESP-DVEITETEEVDITE-- 259 Query: 187644 VELRPVDNELIPVEVDVDSDVIELXXXXXXXXXXXDSETTELSV-ELRPVDNELIPVEVD 187468 P D +++V+E +TT+ V E+ ++E IP E + Sbjct: 260 -----------PAVADAETEVVETVEDTP--------DTTDSEVAEVVETESESIPAEAE 300 Query: 187467 VDSDVIELVADDRPVDVE--VDSEATELSVELRPVDSELMPVEVDVESELIELVADDNPV 187294 D E+VA D V V + EA E + SEL V + E EL DD Sbjct: 301 PD----EIVAVDEEVAVTDPIVEEAAETAEVAEEGLSELEEVRDEAEEELTN---DD--- 350 Query: 187293 DVEVESDATELSVELRPVDSELIPVEVDVDNDEIELVVDERPVDSELMPVEVEVDSELIE 187114 SD+T+ V + ++E E + + E ++E V+ DSE I Sbjct: 351 -----SDSTD--VLINEAETEETVAETETASTIAEPTIEEGAVED---------DSETIV 394 Query: 187113 LVADDNPVDVEVESDATELSVELRPVDNELMPVEV-DVDSDVIELVADERPVDVEV-DSE 186940 ADD+ + ++E E +++ VD E+ +V + D E VA+ ++ EV DS+ Sbjct: 395 AEADDDVSEDDIEEKLAEGEIDIPDVDVEVTEDDVEEADEAADEAVAEADDLEDEVEDSK 454 Query: 186939 AT 186934 T Sbjct: 455 KT 456 Score = 59.7 bits (143), Expect = 1e-07 Identities = 110/485 (22%), Positives = 192/485 (39%), Gaps = 22/485 (4%) Frame = -3 Query: 186684 VDSELMPVEVDVDSDEIELLVDERPVDSELMPVEVEVDSELIELVADDNPVDVEVDSDVN 186505 V+ ++ VE V D EL+ D + + +E E ++++ + + +D + Sbjct: 20 VEQDVSKVETSVKDDH-ELVQDLKKDNDASATIENETVKTDTDIISAEEHEETAHAADKS 78 Query: 186504 ELSVELRPVDNELMPVEVDVESELIELVADDRPVDVD--VESDATELSVELRPVDNELMP 186331 + VE E++P E VE + E +A + + V+ E++ E+ + Sbjct: 79 AVIVE------EVVPEETVVEESIPEPLATTSVEEGEEAVKVAEAEIAEEIGTISEGGKE 132 Query: 186330 VEVDVDSDVIELVAD--DRPVDVEVDSEATELSVELRPVDSELMPVEVDVDSDVIE-LVA 186160 V +D +++IE D D V V E +VEL P + + E + + E L A Sbjct: 133 V-LDSTTEIIEAAQDAADDTELVPVAEAPGETAVELTPTEETPLGDETPPPAPLSEELPA 191 Query: 186159 DDRPVDVEVDS------EATELSVELRP-VDNELMPVEVDVDSDEIELVADDRPVDVEVD 186001 D PV +D+ +A E+ E P +D+++ P E + + +++ P DVE+ Sbjct: 192 GDEPVSSTMDTLPDEVLDAGEVVSEAVPGIDDDVTPEEAGAEQTTADESSNESP-DVEI- 249 Query: 186000 SEATELSVELRPVESELIPVEVEVESDVIELXXXXXXXXXXXXXXATELSVELRPVESEL 185821 +E E+ + P + E++V+E E E P E+E Sbjct: 250 TETEEVDITE--------PAVADAETEVVETVEDTPDTTDSEVAEVVETESESIPAEAE- 300 Query: 185820 IPVEVDVDSDEIELXXXXXXXXXXXXXXATELSVELRPVESELIPVEVDVDSDEIELXXX 185641 P E+ +E+ + A E EL V E + DSD ++ Sbjct: 301 -PDEIVAVDEEVAVTDPIVEEAAETAEVAEEGLSELEEVRDEAEEELTNDDSDSTDVLIN 359 Query: 185640 XXXXXXXXXXXAT-----ELSVELRPV--DNELIPVEVE--VESDEIELVADERPVDV-E 185491 T E ++E V D+E I E + V D+IE E +D+ + Sbjct: 360 EAETEETVAETETASTIAEPTIEEGAVEDDSETIVAEADDDVSEDDIEEKLAEGEIDIPD 419 Query: 185490 VDSEATELSVELRPVESELIPVEVDVESDEIELVADDRPVDVEVDSEATELSVELRPVDS 185311 VD E TE VE E D +DE ADD +VE + +E + + Sbjct: 420 VDVEVTEDDVE-----------EADEAADEAVAEADDLEDEVEDSKKTIGQLLEEQASNE 468 Query: 185310 ELMEL 185296 ++E+ Sbjct: 469 SMLEI 473 Score = 59.7 bits (143), Expect = 1e-07 Identities = 97/438 (22%), Positives = 175/438 (39%), Gaps = 19/438 (4%) Frame = -3 Query: 186909 VDSELMPVEVDV--DSDVIELVADDRPVDVEVDSETTELSVELRPVDS-ELIELVADERP 186739 V+ ++ VE V D ++++ + D +++ET + ++ + E AD+ Sbjct: 20 VEQDVSKVETSVKDDHELVQDLKKDNDASATIENETVKTDTDIISAEEHEETAHAADKSA 79 Query: 186738 VDVEVDSEATELSVELRPVDSELMPVEVDVDSDEIEL----LVDERPVDSELMPVEVEVD 186571 V VE E +V + L V+ + +++ + +E SE ++ Sbjct: 80 VIVE--EVVPEETVVEESIPEPLATTSVEEGEEAVKVAEAEIAEEIGTISEGGKEVLDST 137 Query: 186570 SELIELVAD--DNPVDVEVDSDVNELSVELRPVDNELMPVEVDVESELIE-LVADDRPVD 186400 +E+IE D D+ V V E +VEL P + + E + L E L A D PV Sbjct: 138 TEIIEAAQDAADDTELVPVAEAPGETAVELTPTEETPLGDETPPPAPLSEELPAGDEPVS 197 Query: 186399 VDVES------DATELSVELRP-VDNELMPVEVDVDSDVIELVADDRPVDVEVDSEATEL 186241 +++ DA E+ E P +D+++ P E + + +++ P DVE+ +E E+ Sbjct: 198 STMDTLPDEVLDAGEVVSEAVPGIDDDVTPEEAGAEQTTADESSNESP-DVEI-TETEEV 255 Query: 186240 SVELRPVDSELMPVEVDVDSDVIELVADDRPVDVEVDSEATELSVELRPVDNELMPVEVD 186061 + P D +++V+E V D DSE E+ V+ E + + Sbjct: 256 DIT--------EPAVADAETEVVETVEDTPDT---TDSEVAEV------VETESESIPAE 298 Query: 186060 VDSDEIELVADDRPVDVEVDSEATELSVELRPVESELIPVEVEVESDVIELXXXXXXXXX 185881 + DEI V ++ V + EA E + SEL V E E ++ Sbjct: 299 AEPDEIVAVDEEVAVTDPIVEEAAETAEVAEEGLSELEEVRDEAEEELTN------DDSD 352 Query: 185880 XXXXXATELSVELRPVESELIPVEVDVDSDEIELXXXXXXXXXXXXXXATELSVELRPVE 185701 E E E+E + +E + +E +E + E Sbjct: 353 STDVLINEAETEETVAETETASTIAEPTIEEGAVEDDSETIVAEADDDVSEDDIEEKLAE 412 Query: 185700 SEL-IP-VEVDVDSDEIE 185653 E+ IP V+V+V D++E Sbjct: 413 GEIDIPDVDVEVTEDDVE 430 Score = 55.5 bits (132), Expect = 2e-06 Identities = 101/466 (21%), Positives = 177/466 (37%), Gaps = 20/466 (4%) Frame = -3 Query: 188919 VDSELRPVEVEV--DSDVIELVAEDRPVDVEVESEATELLVELRPVDSELMPVEVEVESD 188746 V+ ++ VE V D ++++ + +D +E+E + ++ + +S Sbjct: 20 VEQDVSKVETSVKDDHELVQDLKKDNDASATIENETVKTDTDIISAEEHEETAHAADKSA 79 Query: 188745 VI--ELVAEDRPVDVEVDSDATELSVELRPVDNELMPVEVDVDSDVIELXXXXXXXXXXX 188572 VI E+V E+ V+ + SVE ++ E+ + I Sbjct: 80 VIVEEVVPEETVVEESIPEPLATTSVEEGEEAVKVAEAEIAEEIGTI------------- 126 Query: 188571 XXXXXXXXXVLKPVDSELMPVEVDVDSELIELVADERPVD--VEVDSDVTELSVELRPVD 188398 SE +D +E+IE D V V E +VEL P + Sbjct: 127 ---------------SEGGKEVLDSTTEIIEAAQDAADDTELVPVAEAPGETAVELTPTE 171 Query: 188397 NELIPVEVDVDSDVIE-LVADDRPVDVEVDSETTELSVELRPVDSELMPVEVEVDNDVIE 188221 + E + + E L A D PV +D+ E+ ++ V SE +P +D+DV Sbjct: 172 ETPLGDETPPPAPLSEELPAGDEPVSSTMDTLPDEV-LDAGEVVSEAVP---GIDDDVTP 227 Query: 188220 LAAXXXXXXXXXXXXXXXXXXVLKPVDSELM-PVEVEVDSDVIELVAD-----DNPVDVE 188059 A + + + ++ P + +++V+E V D D+ V Sbjct: 228 EEAGAEQTTADESSNESPDVEITETEEVDITEPAVADAETEVVETVEDTPDTTDSEVAEV 287 Query: 188058 VESDATELSVELRPVDNELIPVEVDVDSELIELVADDRPVDVDVESEATEL----SVELR 187891 VE+++ + E P + + EV V ++E A+ V + SE E+ EL Sbjct: 288 VETESESIPAEAEPDEIVAVDEEVAVTDPIVEEAAETAEVAEEGLSELEEVRDEAEEELT 347 Query: 187890 PVDSELMPV---EVEVDSDVIELVADDRPVDVDVESDATELSVELSPVDSELMPVEVDVE 187720 DS+ V E E + V E + +E A E E +++ E D+E Sbjct: 348 NDDSDSTDVLINEAETEETVAETETASTIAEPTIEEGAVEDDSETIVAEADDDVSEDDIE 407 Query: 187719 SELIELVADDNPVDVEVESDATELSVELRPVDNELIPVEVDVDSDV 187582 +L E D VDVEV D E E +E + D++ +V Sbjct: 408 EKLAEGEIDIPDVDVEVTEDDVE---EADEAADEAVAEADDLEDEV 450 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 78.6 bits (192), Expect = 3e-13 Identities = 73/242 (30%), Positives = 107/242 (44%), Gaps = 11/242 (4%) Frame = +2 Query: 17117 KMSRITTPDGTEIYYNDWGTGQPIVLVGGWLVSADMWEYQAHFLASNGFRVIAYDRRGFG 17296 K I DG + + GTG P+V + G VSA +E LA +GFRVIA D G Sbjct: 2 KHETIVLADGFRVGVSTVGTGAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHG 61 Query: 17297 RSSQPWSGYDYDSLTSDLDELIQQLDLTDAILVGYSMGGGEVARYIGTRGSKRIAKVVLL 17476 RS +G+ + +T + + +LD+ AI G+SMGGG V I R R+A VLL Sbjct: 62 RSGSLPTGHTVEDMTRVTLKTLDELDIHRAIFAGHSMGGGMVVE-IAARHPHRVAAAVLL 120 Query: 17477 SATTPLLMAGADNPAGVPRDIFDGLRAG---VLHDRADFLVNFGRAFT---GADHDASVV 17638 A AG ++ D ++ G L RA G A T G ++A + Sbjct: 121 DAA-----AGQEH--------HDNIKVGHYATLAFRA--AKKLGEAVTDIVGDGYEAMHL 165 Query: 17639 TQAMLDWTFNMAITASIKATHDCIASFS-----ETDLRPDLKKFDIPTLVIHGGADPVVP 17803 +F + S+ A+F+ T L + + +PT V+HG D +VP Sbjct: 166 RDTGEKLSFLGMLRDSVSGLRFVRAAFALMKADTTPLLHAMYRHGVPTAVLHGLHDQIVP 225 Query: 17804 ID 17809 + Sbjct: 226 YE 227 >ref|NP_817650.1|gp61 Length = 274 Score = 75.9 bits (185), Expect = 2e-12 Identities = 75/253 (29%), Positives = 108/253 (42%), Gaps = 5/253 (1%) Frame = +2 Query: 17117 KMSRITTPDGTEIYYNDWGTGQPIVLVGGWLVSADMWEYQAHFLASNGFRVIAYDRRGFG 17296 K I DG + + GTG P+V + G VSA +E LA GF V A D G Sbjct: 4 KHKTIVLDDGFRVGVSQVGTGVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHG 63 Query: 17297 RSSQPWSGYDYDSLTSDLDELIQQLDLTDAILVGYSMGGGEVARYIGTRGSKRIAKVVLL 17476 R+ G+ + +T + L + A+ VG+SMGGG VA I R +R+ +LL Sbjct: 64 RTDSLPFGHTVEEMTRVTLRALDALGIDQAVFVGHSMGGGMVAE-IAPRYPERVLAAILL 122 Query: 17477 SATTPLLMAGADNPAGVPRDI-----FDGLRAGVLHDRADFLVNFGRAFTGADHDASVVT 17641 A AG ++ A + + G VL D + R+ T A + Sbjct: 123 DAA-----AGKEHHANLKDPLRATQRLSGAVVDVLGDTYQAIKL--RSATEGLGLAQTLR 175 Query: 17642 QAMLDWTFNMAITASIKATHDCIASFSETDLRPDLKKFDIPTLVIHGGADPVVPIDLSGK 17821 + + F A A +KA + L +K D+ T VIHG +D +VP +GK Sbjct: 176 SSFAGFRFVRAAYALLKADTE--------PLLKAMKALDVQTAVIHGLSDQIVPF-AAGK 226 Query: 17822 VSAELIPGARLVV 17860 +AE GA V Sbjct: 227 SAAEASGGALYAV 239 >ref|NP_040341.1|putative transposase Length = 322 Score = 69.3 bits (168), Expect = 2e-10 Identities = 89/333 (26%), Positives = 143/333 (42%), Gaps = 13/333 (3%) Frame = +2 Query: 181892 YQHLSAEERATIMILL----------QQGCSARGIARTLRRSPSTITREIRRALQWPQRT 182041 Y HLS ++ + LL +Q SA IA+ L R STI REI+R + + Sbjct: 2 YSHLSFMDKVKLEQLLLSKIFLKKNGEQNISA--IAKYLNRHRSTILREIKRFKTIDEYS 59 Query: 182042 AFVPAGSGGCTYDXXXXXXXXXXXXLKRRRHPKLAEDGVLFGVVH-HFLLEGWSPSQIAG 182218 A+ S Y+ K + K E+ + F +H F + SPS++ Sbjct: 60 AYK---SDKMYYEKRK----------KNNKRFKFTEEQLNF--IHLRFNVYHDSPSELI- 103 Query: 182219 TLKRMWPDDLDRRVSHETIYNCIYAMPRGELRKELIACLRRAQAKRMPRSRGQDRRGQLP 182398 + + V +T+Y I G L++ L R K+ R D RG+L Sbjct: 104 -YRYFLKFKVKFPVCVKTLYKWIRLGFYGFLKQNL-----RHHGKKYKRKGKSDNRGKLT 157 Query: 182399 DAVSIHLRPPEANERAFPGHWEGDLLKGAANRSAXXXXXXXXXXXXXXAKLKDATAASAL 182578 D SI N+ + G E D + G ++SA KL++ TA Sbjct: 158 DFKSIW---DIDNKVSNVGWLEMDTVVGKDHKSAILVLVEQLSKKYFAIKLENHTAREVE 214 Query: 182579 EGFTAKL--RSIAEPMRKTLTYDRGKEMARHPELSEATGIRVYFCDPRSPWQRGSCENIN 182752 + F + ++ ++ +T DR KE ++ E+ +VYFCD SP Q+ E +N Sbjct: 215 KKFKDIIIKNNLIGKIKGIIT-DRRKEFSKWREMEIFAETQVYFCDAGSPQQKPLIEYMN 273 Query: 182753 GLLRQYLPKGTDLSVYSQEELDAIADRLNSRPR 182851 LR + PKGTD + SQ+++D + + +N + R Sbjct: 274 SELRHWFPKGTDFNKVSQKQIDWVVNVINDKLR 306 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 62.8 bits (151), Expect = 1e-08 Identities = 34/93 (36%), Positives = 54/93 (58%) Frame = +1 Query: 153754 RLADIVNLTATKYSLPPALVYAIISIESRFQEKARGQHGATGLMQVVPTAHRGMLRDVKD 153933 + + +N A+KY++ PAL+ A+I ES F KAR GA GLMQ++P + + V + Sbjct: 1421 KYSSYINSAASKYNVDPALIAAVIQQESGFNAKARSGVGAMGLMQLMPATAKSL--GVNN 1478 Query: 153934 LTEPNANVDVGSRILSGYVRAAGGNVQAGLKSY 154032 +P NV G++ L+ + GGNV+ L +Y Sbjct: 1479 AYDPYQNVMGGTKYLAQQLEKFGGNVEKALAAY 1511 >ref|NP_046572.1|ABC transporter Length = 705 Score = 61.2 bits (147), Expect = 4e-08 Identities = 43/182 (23%), Positives = 89/182 (48%), Gaps = 3/182 (1%) Frame = +1 Query: 151624 VDDVSLTMKQGTITALVGASGSGKSTLLRMINRLIAPSSGTIRIDGVDTAGVPPEQLRRR 151803 V+D++L + + ++G SG+GKST + +++L +I ++G+D +R+R Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 151804 IGYVIQGHGLFPHWSVARNIATVPRLLGWPAARIDARVRELLELFHLAPSEFADKLPH-- 151977 I Y+ + LF ++ N+ + + + + E +++ KL Sbjct: 559 IVYIDENPFLF-KGTIKENLC-MGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG 616 Query: 151978 -ELSGGQQQRVGVARALAAEPAMLLMDEPFGALDPIIRNKAQDDLYALQRRLGITVVIVT 152154 LS GQ+QR+ +ARA+ +P +L++DE +DP +Y R+ ++++T Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDP----DNTKLIYETLHRMDCLIILIT 672 Query: 152155 HD 152160 H+ Sbjct: 673 HN 674 Score = 55.5 bits (132), Expect = 2e-06 Identities = 38/153 (24%), Positives = 77/153 (50%), Gaps = 6/153 (3%) Frame = -2 Query: 57826 VSIEVNKGEIVTLIGSNGAGKTTLMMTVCGTPRASSGRVLFEGNDITAMSTHQIMRQGMA 57647 +++ +++ + V +IG +G GK+T ++ + + G DI H +R+ + Sbjct: 502 INLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYD-HLSIRKRIV 560 Query: 57646 ISPEGRRVFPSLTVLENLKMGGFFASRHEIDDGI------EHVFKLFPRLKERAAQRAGT 57485 E +F T+ ENL MG F ++EI++ E + L + + ++ Sbjct: 561 YIDENPFLFKG-TIKENLCMGEIF-DQNEIENACIMSQCHEFICNLDKQYSYKLSENGSN 618 Query: 57484 MSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAP 57386 +S G++Q LA+ RA++ +P++L+LDE + P Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNIDP 651 Score = 44.3 bits (103), Expect = 0.005 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 5/159 (3%) Frame = -3 Query: 172581 VHNVSFDVQEGEIFVLMGLSGSGKSTLIRLVNRLVDPSAGKVLIDGLDVXXXXXXXXXXX 172402 V +++ + + +++G SG+GKST + +++L + ++GLD+ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSI--- 555 Query: 172401 XRKDMSMVFQSFALMPHRTVVSNAAFGLEVAGVGKKERERRAMEVLEQVGLAP--FSHKL 172228 + + + T+ N G E+ + E + E + +S+KL Sbjct: 556 --RKRIVYIDENPFLFKGTIKENLCMG-EIFDQNEIENACIMSQCHEFICNLDKQYSYKL 612 Query: 172227 P---SELSGGMQQRVGLARALAVNPSLMIMDEAFSALDP 172120 S LS G +QR+ LARA+ P ++I+DE+ S +DP Sbjct: 613 SENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDP 651 Score = 41.2 bits (95), Expect = 0.046 Identities = 42/186 (22%), Positives = 83/186 (44%), Gaps = 14/186 (7%) Frame = +1 Query: 136267 LKHVNLDIRPGEIFALLGPNGAGKTTLIGSICGIVTPTEGRVTVGGHDIR--DHYRAARE 136440 ++ +NL + + ++G +G GK+T S+ + + + + G DI DH + Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 136441 MIGLVPQELTTDAFETVWATVSFSRGLFGKAPDPAYIEKTL------KALSLWDKRDNKL 136602 ++ + D ++ G+ D IE + + DK+ + Sbjct: 559 IVYI-------DENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYK 611 Query: 136603 MT-----LSGGMKRRVMIAKALSHEPRILFLDEPTAGVDVELRRDMWKLV-DSLRESGVT 136764 ++ LS G K+R+ +A+A+ H+P++L LDE + +D D KL+ ++L Sbjct: 612 LSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNID----PDNTKLIYETLHRMDCL 667 Query: 136765 ILLTTH 136782 I+L TH Sbjct: 668 IILITH 673 >ref|NP_046976.1|tail protein Length = 1186 Score = 54.3 bits (129), Expect = 5e-06 Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 7/232 (3%) Frame = -3 Query: 187305 DNPVDVEVESDATELSVELRPVDSEL--IP--VEVDVDNDEIELVVDERPVDS-ELMPVE 187141 D+ + V+V DA E+ L +++ L +P VEVD+ ++ + E DS E +P + Sbjct: 3 DHELAVQVRMDAEEVVNGLNDLNNALSNLPGSVEVDITTEDTVTPILETIQDSLETLPSD 62 Query: 187140 VEVDSELIELVADDNPVDVE--VESDATELSVELRPVDNELMPVEVDVDSDVIELVADER 186967 VE+ + A + +++ V+ +E++V L DN DV + E ++DE Sbjct: 63 VEITISAFDDFATETITNIKDVVDGLPSEVNVTLTAEDNAS-----DVLDSLKERLSDEF 117 Query: 186966 PVDVEVDSEATELSVELRPVDSELMPVEVDVDSDVIELVADDRPVDVEVDSETTELSVEL 186787 + + VD ATE L+ + SE+ P VD + + VD TE+ L Sbjct: 118 NITLNVDDNATEPITNLKELLSEI-PSTVD--------------ISLNVDDNATEIVERL 162 Query: 186786 RPVDSELIELVADERPVDVEVDSEATELSVELRPVDSELMPVEVDVDSDEIE 186631 + ++ + V +V + E +L +L +D V+VD++ +E Sbjct: 163 HGLLGDIPDEVTTTVNAEVN-EGEVEDLKAKLEEIDGTTYDTAVNVDTESME 213 >ref|NP_818239.1|gp188 Length = 318 Score = 52.0 bits (123), Expect = 3e-05 Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 3/199 (1%) Frame = +3 Query: 54699 KCDERGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAVVTSAQIEE 54878 + + G ++ DE+ TG GR G ++ Q G TPD + G GL L V+ A++ + Sbjct: 131 RATKSGRTVVADESATGFGRLGRIWGHQAYGFTPDAIIFGGPAGGGLTLGGVIGPAELLD 190 Query: 54879 RAHALGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLV---QRANLMGERLRRGLLDLMERF 55049 A F PL A G L + + L + GERLR L++RF Sbjct: 191 DA------FVGPMAGAPLACATGAATLAAINPELLEHVREEGVTFGERLRA----LVDRF 240 Query: 55050 ECIGDXXXXXXXXXXEIVKDRRTKEPADGLGAKITRECMKLGLSMNIVQLPGMGGVFRIA 55229 GD D R+ + L K + GL + P +G + Sbjct: 241 ---GDYLADTAGSGLYHTLDFRSPQ----LARKFEVSTRQHGL----LTAPPVGSTVVVT 289 Query: 55230 PPLTVSEAEIDLGLSLLEQ 55286 P L SE E+ G+ L+ + Sbjct: 290 PTLIASERELARGVELIAE 308 Score = 40.8 bits (94), Expect = 0.060 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 8/102 (7%) Frame = +3 Query: 54078 EPLIVERARGSFVYDADGRAILDFTSGQMSAVLGHCHPDIVAVIAEYAGKLDHLF----- 54242 +P+ ++RA +V+D +LDFT+ + A +GH HP ++ I E+ LD+ Sbjct: 4 DPIAIQRADLHYVFDQYNTQLLDFTA--LQAPIGHNHPWVLTAIREH---LDYYVRTGPA 58 Query: 54243 SGMLSRPVVELATRLAD-LTPPGLD--RALLLSTGAESNEAA 54359 SG ++R VE A +L D L P D R L G ++ A Sbjct: 59 SGHVARWPVEYARKLIDSLERPDADSLRVLYAEGGRDAGAVA 100 >ref|NP_665977.1|putative proliferation cellular nuclear antigene Length = 247 Score = 50.1 bits (118), Expect = 1e-04 Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 3/185 (1%) Frame = -3 Query: 187065 TELSVELRPVDNELMPVEVDVDSDVIELVADERPVDVEVDSEATELSVELRPVDSELMPV 186886 +EL P+ + +V+++ D + + A + V+S A E D L+ + Sbjct: 9 SELESFTDPISQLVEECKVNLNEDGLHVRAVDPANVGMVESNAHASGFESYEADGGLIGL 68 Query: 186885 EVDVDSDVIELVADDRPVDVEVDSETTELSVELRPVDSELIELVADERPVDVEV-DSEAT 186709 VD DVI + V +E+D ET +L++++ ++ L + D + ++ D + T Sbjct: 69 NVDRFEDVIGMANSGDLVHLELDEETRKLAIQIEGMEFTLALIDPDSIRAEPDIPDLDLT 128 Query: 186708 -ELSVELRPVDSELMPVEVDVDSDEIELLVDERPVDSELMPVEVEVDSELIEL-VADDNP 186535 E+ +E R +D + D+ SD I L VDE+ EL +E E D++ + + + D+ Sbjct: 129 SEIVLEGRHIDRGIK--AADMVSDHITLAVDEK---EELFEIEAEGDTDDVHIGLERDDL 183 Query: 186534 VDVEV 186520 +D++V Sbjct: 184 IDLQV 188 Score = 48.5 bits (114), Expect = 3e-04 Identities = 53/247 (21%), Positives = 111/247 (44%), Gaps = 1/247 (0%) Frame = -3 Query: 187656 TELSVELRPVDNELIPVEVDVDSDVIELXXXXXXXXXXXDSETTELSVELRPVDNELIPV 187477 +EL P+ + +V+++ D + + +S E D LI + Sbjct: 9 SELESFTDPISQLVEECKVNLNEDGLHVRAVDPANVGMVESNAHASGFESYEADGGLIGL 68 Query: 187476 EVDVDSDVIELVADDRPVDVEVDSEATELSVELRPVDSELMPVEVDVESELIELVADDNP 187297 VD DVI + V +E+D E +L++++ ++ L ++ D + A+ + Sbjct: 69 NVDRFEDVIGMANSGDLVHLELDEETRKLAIQIEGMEFTLALIDPD------SIRAEPDI 122 Query: 187296 VDVEVESDATELSVELRPVDSELIPVEVDVDNDEIELVVDERPVDSELMPVEVEVDSELI 187117 D+++ S E+ +E R +D + D+ +D I L VDE+ EL +E E D++ + Sbjct: 123 PDLDLTS---EIVLEGRHIDRGI--KAADMVSDHITLAVDEK---EELFEIEAEGDTDDV 174 Query: 187116 EL-VADDNPVDVEVESDATELSVELRPVDNELMPVEVDVDSDVIELVADERPVDVEVDSE 186940 + + D+ +D++V + S++ + M +D +V + +E PV + +E Sbjct: 175 HIGLERDDLIDLQVGPARSLFSLDYL----KDMSKAIDAGDEVTIELGEEFPVKLAFTTE 230 Query: 186939 ATELSVE 186919 + V+ Sbjct: 231 EGNVDVQ 237 Score = 46.2 bits (108), Expect = 0.001 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 1/192 (0%) Frame = -3 Query: 186507 NELSVELRPVDNELMPVEVDVESELIELVADDRPVDVD-VESDATELSVELRPVDNELMP 186331 +EL P+ + +V++ + + + A D P +V VES+A E D L+ Sbjct: 9 SELESFTDPISQLVEECKVNLNEDGLHVRAVD-PANVGMVESNAHASGFESYEADGGLIG 67 Query: 186330 VEVDVDSDVIELVADDRPVDVEVDSEATELSVELRPVDSELMPVEVDVDSDVIELVADDR 186151 + VD DVI + V +E+D E +L++++ ++ L +D D I D Sbjct: 68 LNVDRFEDVIGMANSGDLVHLELDEETRKLAIQIEGMEFTL----ALIDPDSIRAEPDIP 123 Query: 186150 PVDVEVDSEATELSVELRPVDNELMPVEVDVDSDEIELVADDRPVDVEVDSEATELSVEL 185971 +D+ +E+ +E R +D + D+ SD I L D++ E+++E V + Sbjct: 124 DLDL-----TSEIVLEGRHIDRGIK--AADMVSDHITLAVDEKEELFEIEAEGDTDDVHI 176 Query: 185970 RPVESELIPVEV 185935 +LI ++V Sbjct: 177 GLERDDLIDLQV 188 Score = 41.6 bits (96), Expect = 0.035 Identities = 39/184 (21%), Positives = 84/184 (45%), Gaps = 3/184 (1%) Frame = -3 Query: 187197 EIELVVDERPVDSELMPVEVEVDSELIELVADDNPVDVEVESDATELSVELRPVDNELMP 187018 E+E D P+ + +V ++ + + + A D VES+A E D L+ Sbjct: 10 ELESFTD--PISQLVEECKVNLNEDGLHVRAVDPANVGMVESNAHASGFESYEADGGLIG 67 Query: 187017 VEVDVDSDVIELVADERPVDVEVDSEATELSVELRPVDSELMPVEVD---VDSDVIELVA 186847 + VD DVI + V +E+D E +L++++ ++ L ++ D + D+ +L Sbjct: 68 LNVDRFEDVIGMANSGDLVHLELDEETRKLAIQIEGMEFTLALIDPDSIRAEPDIPDL-- 125 Query: 186846 DDRPVDVEVDSETTELSVELRPVDSELIELVADERPVDVEVDSEATELSVELRPVDSELM 186667 D ++ ++ + ++ + S+ I L DE+ E+++E V + +L+ Sbjct: 126 -DLTSEIVLEGRHIDRGIKAADMVSDHITLAVDEKEELFEIEAEGDTDDVHIGLERDDLI 184 Query: 186666 PVEV 186655 ++V Sbjct: 185 DLQV 188 Score = 40.8 bits (94), Expect = 0.060 Identities = 38/178 (21%), Positives = 80/178 (44%), Gaps = 3/178 (1%) Frame = -3 Query: 187785 TELSVELSPVDSELMPVEVDVESELIELVADDNPVDVEVESDATELSVELRPVDNELIPV 187606 +EL P+ + +V++ + + + A D VES+A E D LI + Sbjct: 9 SELESFTDPISQLVEECKVNLNEDGLHVRAVDPANVGMVESNAHASGFESYEADGGLIGL 68 Query: 187605 EVDVDSDVIELXXXXXXXXXXXDSETTELSVELRPVDNELIPVEVD---VDSDVIELVAD 187435 VD DVI + D ET +L++++ ++ L ++ D + D+ +L Sbjct: 69 NVDRFEDVIGMANSGDLVHLELDEETRKLAIQIEGMEFTLALIDPDSIRAEPDIPDL--- 125 Query: 187434 DRPVDVEVDSEATELSVELRPVDSELMPVEVDVESELIELVADDNPVDVEVESDATEL 187261 D ++ ++ + ++ + S+ + + VD + EL E+ A+ + DV + + +L Sbjct: 126 DLTSEIVLEGRHIDRGIKAADMVSDHITLAVDEKEELFEIEAEGDTDDVHIGLERDDL 183 Score = 39.3 bits (90), Expect = 0.17 Identities = 31/157 (19%), Positives = 72/157 (45%) Frame = -3 Query: 186378 TELSVELRPVDNELMPVEVDVDSDVIELVADDRPVDVEVDSEATELSVELRPVDSELMPV 186199 +EL P+ + +V+++ D + + A D V+S A E D L+ + Sbjct: 9 SELESFTDPISQLVEECKVNLNEDGLHVRAVDPANVGMVESNAHASGFESYEADGGLIGL 68 Query: 186198 EVDVDSDVIELVADDRPVDVEVDSEATELSVELRPVDNELMPVEVDVDSDEIELVADDRP 186019 VD DVI + V +E+D E +L++++ ++ L ++ D E ++ D Sbjct: 69 NVDRFEDVIGMANSGDLVHLELDEETRKLAIQIEGMEFTLALIDPDSIRAEPDIPDLDLT 128 Query: 186018 VDVEVDSEATELSVELRPVESELIPVEVEVESDVIEL 185908 ++ ++ + ++ + S+ I + V+ + ++ E+ Sbjct: 129 SEIVLEGRHIDRGIKAADMVSDHITLAVDEKEELFEI 165 >ref|NP_835729.1|hypothetical protein Length = 282 Score = 44.3 bits (103), Expect = 0.005 Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 8/177 (4%) Frame = -3 Query: 186735 DVEVDSEATELSVELRPVDSELMPVEVDVDSDEIELLVDERPVDSELMPVEVEVDSELIE 186556 + + S E+ L+ ++ EL VE + E VDE D L EV L + Sbjct: 25 EASIHSITEEIREALKELEEELEQVEEPEGNPLTEAKVDETD-DDTLASFAEEVAQTLQK 83 Query: 186555 LVADDNPVDVEVDSDVNELSVELRPVDNELMPVEVDVESELIELVADDRPVDVDVE--SD 186382 A + E+ +++ + ++E +E+D++ E +EL DD + +DVE + Sbjct: 84 --AWETKQQEEMREAKHKMKRRITEAEHEDEDLELDLDEEDLELDLDDEDIKIDVEDVDE 141 Query: 186381 ATELSVELRPVDNELM-PVEVDVDSDVIELVADDRPVDVEVD-----SEATELSVEL 186229 EL E+ D +L E+D+D D+ V + V E+D E E ++EL Sbjct: 142 DGELEAEIELKDADLSDDEELDIDVDIKGAVESEEHVREEMDLLHTLLERVEEAIEL 198 Score = 43.1 bits (100), Expect = 0.012 Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 7/170 (4%) Frame = -3 Query: 186396 DVESDATELSVELRPVD----NELMPVEVD-VDSDVIELVADDRPVDVEVDSEATELSVE 186232 ++ EL EL V+ N L +VD D D + A++ ++ E T+ E Sbjct: 34 EIREALKELEEELEQVEEPEGNPLTEAKVDETDDDTLASFAEEVAQTLQKAWE-TKQQEE 92 Query: 186231 LRPVDSELMP--VEVDVDSDVIELVADDRPVDVEVDSEATELSVELRPVDNELMPVEVDV 186058 +R ++ E + + + +EL D+ +++++D E ++ VE D EL E ++ Sbjct: 93 MREAKHKMKRRITEAEHEDEDLELDLDEEDLELDLDDEDIKIDVEDVDEDGEL---EAEI 149 Query: 186057 DSDEIELVADDRPVDVEVDSEATELSVELRPVESELIPVEVEVESDVIEL 185908 + + +L +DD +D++VD + S E E +L+ +E + IEL Sbjct: 150 ELKDADL-SDDEELDIDVDIKGAVESEEHVREEMDLLHTLLERVEEAIEL 198 Score = 42.7 bits (99), Expect = 0.016 Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 17/178 (9%) Frame = -3 Query: 187107 ADDNPVDVEVESDATELSVELRPVD----NELMPVEVD-VDSDVIELVADE------RPV 186961 A + + E+ EL EL V+ N L +VD D D + A+E + Sbjct: 26 ASIHSITEEIREALKELEEELEQVEEPEGNPLTEAKVDETDDDTLASFAEEVAQTLQKAW 85 Query: 186960 DVEVDSEATELSVELR----PVDSELMPVEVDVDSDVIELVADDR--PVDVEVDSETTEL 186799 + + E E +++ + E +E+D+D + +EL DD +DVE E EL Sbjct: 86 ETKQQEEMREAKHKMKRRITEAEHEDEDLELDLDEEDLELDLDDEDIKIDVEDVDEDGEL 145 Query: 186798 SVELRPVDSELIELVADERPVDVEVDSEATELSVELRPVDSELMPVEVDVDSDEIELL 186625 E+ D++L +D+ +D++VD + S E + +L+ ++ + IELL Sbjct: 146 EAEIELKDADL----SDDEELDIDVDIKGAVESEEHVREEMDLLHTLLERVEEAIELL 199 Score = 41.2 bits (95), Expect = 0.046 Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 2/228 (0%) Frame = -3 Query: 187422 DVEVDSEATELSVELRPVDSELMPVEVDVESELIELVADDNPVDVEVESDATELSVELRP 187243 + + S E+ L+ ++ EL VE + L E D+ D + S A E++ L+ Sbjct: 25 EASIHSITEEIREALKELEEELEQVEEPEGNPLTEAKVDETDDDT-LASFAEEVAQTLQK 83 Query: 187242 VDSELIPVEVDVDNDEIELVVDERPVDSELMPVEVEVDSELIELVADDNPVDVEVES--D 187069 E+ +++ + E + E +E+++D E +EL DD + ++VE + Sbjct: 84 AWETKQQEEMREAKHKMKRRITEAEHEDE--DLELDLDEEDLELDLDDEDIKIDVEDVDE 141 Query: 187068 ATELSVELRPVDNELMPVEVDVDSDVIELVADERPVDVEVDSEATELSVELRPVDSELMP 186889 EL E+ D +L +D+ +D++VD + S E + +L+ Sbjct: 142 DGELEAEIELKDADL---------------SDDEELDIDVDIKGAVESEEHVREEMDLLH 186 Query: 186888 VEVDVDSDVIELVADDRPVDVEVDSETTELSVELRPVDSELIELVADE 186745 ++ + IEL+ + E +E R +S + + V DE Sbjct: 187 TLLERVEEAIELLRKVAGEETEEMAEAASCPTPRRMRESRVKKPVIDE 234 Score = 41.2 bits (95), Expect = 0.046 Identities = 44/204 (21%), Positives = 90/204 (44%), Gaps = 10/204 (4%) Frame = -3 Query: 186531 DVEVDSDVNELSVELRPVDNELMPVEVDVESELIELVADDRPVDVDVESDATELSVELRP 186352 + + S E+ L+ ++ EL VE + L E D+ D + S A E++ L+ Sbjct: 25 EASIHSITEEIREALKELEEELEQVEEPEGNPLTEAKVDETDDDT-LASFAEEVAQTLQK 83 Query: 186351 V-----DNELMPVEVDVDSDVIELVADDRPVDVEVDSEATELSVELRPVDSELMPVEVDV 186187 E+ + + + E +D +++++D E EL ++ + ++ V+ D Sbjct: 84 AWETKQQEEMREAKHKMKRRITEAEHEDEDLELDLDEEDLELDLDDEDIKIDVEDVDEDG 143 Query: 186186 DSDV-IEL----VADDRPVDVEVDSEATELSVELRPVDNELMPVEVDVDSDEIELVADDR 186022 + + IEL ++DD +D++VD + S E + +L+ ++ + IEL+ Sbjct: 144 ELEAEIELKDADLSDDEELDIDVDIKGAVESEEHVREEMDLLHTLLERVEEAIELLRKVA 203 Query: 186021 PVDVEVDSEATELSVELRPVESEL 185950 + E +EA R ES + Sbjct: 204 GEETEEMAEAASCPTPRRMRESRV 227 Score = 39.7 bits (91), Expect = 0.13 Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 4/216 (1%) Frame = -3 Query: 186825 EVDSETTELSVELRPVD----SELIELVADERPVDVEVDSEATELSVELRPVDSELMPVE 186658 E+ EL EL V+ + L E DE D + S A E++ L+ E Sbjct: 34 EIREALKELEEELEQVEEPEGNPLTEAKVDETDDDT-LASFAEEVAQTLQKAWETKQQEE 92 Query: 186657 VDVDSDEIELLVDERPVDSELMPVEVEVDSELIELVADDNPVDVEVDSDVNELSVELRPV 186478 + +++ + E + E +E+++D E +EL DD + ++V+ DV+E Sbjct: 93 MREAKHKMKRRITEAEHEDE--DLELDLDEEDLELDLDDEDIKIDVE-DVDE-------- 141 Query: 186477 DNELMPVEVDVESELIELVADDRPVDVDVESDATELSVELRPVDNELMPVEVDVDSDVIE 186298 D EL E ++E + +L +DD +D+DV+ S E + +L+ ++ + IE Sbjct: 142 DGEL---EAEIELKDADL-SDDEELDIDVDIKGAVESEEHVREEMDLLHTLLERVEEAIE 197 Query: 186297 LVADDRPVDVEVDSEATELSVELRPVDSELMPVEVD 186190 L+ + E +EA R +S + +D Sbjct: 198 LLRKVAGEETEEMAEAASCPTPRRMRESRVKKPVID 233 Score = 39.3 bits (90), Expect = 0.17 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 2/123 (1%) Frame = -3 Query: 188061 EVESDATELSVELRPVDNELIPVEVDVDSELIELVADDRPVDVDVE--SEATELSVELRP 187888 E+ ++ + ++E +E+D+D E +EL DD + +DVE E EL E+ Sbjct: 92 EMREAKHKMKRRITEAEHEDEDLELDLDEEDLELDLDDEDIKIDVEDVDEDGELEAEIEL 151 Query: 187887 VDSELMPVEVEVDSDVIELVADDRPVDVDVESDATELSVELSPVDSELMPVEVDVESELI 187708 D++L +DD +D+DV+ S E + +L+ ++ E I Sbjct: 152 KDADL---------------SDDEELDIDVDIKGAVESEEHVREEMDLLHTLLERVEEAI 196 Query: 187707 ELV 187699 EL+ Sbjct: 197 ELL 199 >ref|NP_040700.1|hypothetical protein Length = 265 Score = 43.1 bits (100), Expect = 0.012 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 9/114 (7%) Frame = +1 Query: 153763 DIVNLTATKYSLPPALVYAIISIESRFQEKARGQHGATGLMQVVPTAHRGMLRDVKDLTE 153942 + + + +Y+L P LV ++ ES + GA GLMQ++P + + V + + Sbjct: 9 ETIGAASAQYNLDPRLVAGVVQTESSGNPRTTSGVGAMGLMQLMPATAKSL--GVTNAYD 66 Query: 153943 PNANVDVGSRILSGYVRAAGGNVQAGLKSYGGSN---------AYAAKVMQRVD 154077 P N+ G+ +L + G A L +GG+N +Y KVM+ ++ Sbjct: 67 PTQNIYGGAALLRENLDRYGDVNTALLAYHGGTNQANWGAKTKSYPGKVMKNIN 120 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 40.0 bits (92), Expect = 0.10 Identities = 39/117 (33%), Positives = 49/117 (41%), Gaps = 11/117 (9%) Frame = +2 Query: 165512 AHHLRKRRDE-RSGGQPVGRHARIA----DRDAVPLLRGRQRQFERIEHEAGAAVDLRRA 165676 AHHLR R R+ P+G AR+ DR R R R++ G V RR Sbjct: 127 AHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRR-RPDPRRRVQPRLGVGVHRRRG 185 Query: 165677 DRVQP------AAPFVAVARRMQQRDPREIVDRVQRRSGLARAHRRQAFVEQRHGRH 165829 R A P ARR ++R E V+ R R HRR+A + RH RH Sbjct: 186 ARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRRHRRRASLRPRHRRH 242 Score = 38.1 bits (87), Expect = 0.39 Identities = 35/94 (37%), Positives = 43/94 (45%), Gaps = 7/94 (7%) Frame = -1 Query: 161294 TDANDISRTPTQRKPDERQRVRPVQDRHRPVEFAYGRPDDRRVPLRVAHR-RCEPARLRA 161118 T D RT +R+PD R+RV+P R + R RRV RV R R P R Sbjct: 152 TPVEDRRRTRRRRRPDPRRRVQP-----RLGVGVHRRRGARRVGRRVRVRARPGPGAARR 206 Query: 161117 PRA------GRTIRVARCHRQGPRHRQGGAARPR 161034 PR R +R R R G RHR+ + RPR Sbjct: 207 PRRRPHPEHPRAVRPRR--RTGRRHRRRASLRPR 238 >ref|YP_024936.1|gp16 Length = 763 Score = 38.9 bits (89), Expect = 0.23 Identities = 26/91 (28%), Positives = 44/91 (48%) Frame = +1 Query: 153796 LPPALVYAIISIESRFQEKARGQHGATGLMQVVPTAHRGMLRDVKDLTEPNANVDVGSRI 153975 +PP L+ A+ + + GA G+ Q++P R V D T+P +D ++ Sbjct: 311 VPPELMLALKNAGEKSNSGQVSPKGAAGVSQMMPENLRKY--GVTDPTDPMQALDGMAKY 368 Query: 153976 LSGYVRAAGGNVQAGLKSYGGSNAYAAKVMQ 154068 L+ + GGN+QA + Y G AA V++ Sbjct: 369 LADTQKQYGGNLQAMIADYNGGPKQAAAVLR 399 >ref|NP_899500.1|hypothetical protein Length = 197 Score = 38.1 bits (87), Expect = 0.39 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 4/109 (3%) Frame = -1 Query: 187649 YRSSSDRWTTS*YRSKSTWTAT*SNSWPTTDRSTWTSTARPPSCRSS-SGRWTTS*YRSK 187473 YR S+ +TTS + +T +T + + +T RST STA + ++ + WTTS R+ Sbjct: 81 YRLST--YTTSFTTTYNTTVSTSNTTSRSTSRSTTRSTAYSTTRSTAYTTSWTTS--RTT 136 Query: 187472 STWTAT*SNSWPT---TDRSTWRSTARPPSYPSS*GRWTAS*CPWKSTW 187335 S + S S+ T T RST ST R +Y S+ WT S W +T+ Sbjct: 137 SVTKGSYSTSYTTSRATSRSTSYSTTRSTAYTST---WTTS---WTTTY 179 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 944,404,983 Number of Sequences: 14420 Number of extensions: 17926501 Number of successful extensions: 69854 Number of sequences better than 0.5: 17 Number of HSP's better than 0.5 without gapping: 11504 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 69626 length of database: 3,019,461 effective HSP length: 127 effective length of database: 1,188,121 effective search space used: 104764945417 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig190 (264,103 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_932363.1|hypothetical protein 356 6e-97 ref|NP_050655.1|Gin 232 1e-59 ref|NP_818250.1|gp199 227 3e-58 ref|YP_006499.1|Cin 224 4e-57 ref|NP_944246.1|putative single-strand DNA binding protein 193 6e-48 ref|YP_025041.1|putative transposase B 164 4e-39 ref|NP_818618.1|gp80 161 3e-38 ref|NP_958229.1|gene 55 protein 157 4e-37 ref|NP_958203.1|gene 27 protein 144 5e-33 ref|NP_061653.1|transposase 141 2e-32 ref|YP_164279.1|single-stranded DNA-binding protein 141 2e-32 ref|YP_006485.1|Ssb 135 2e-30 ref|NP_859396.1|hypothetical protein 132 2e-29 ref|NP_536395.1|ISBt3 transposase subunit protein 125 2e-27 ref|YP_024435.1|hypothetical protein 117 4e-25 ref|NP_046685.1|putative DNA polymerase 103 8e-21 ref|NP_758949.1|ORF58 77 6e-13 ref|NP_817947.1|gp96 75 2e-12 ref|NP_112675.1|SSB 75 4e-12 ref|NP_690785.1|site-specific recombinase for integration and ex... 75 4e-12 ref|NP_463492.1|putative integrase 75 4e-12 ref|NP_076587.1|SSB protein 73 1e-11 ref|NP_463525.1|putative SSB protein 71 4e-11 ref|NP_438126.1|single-strand binding protein 71 5e-11 ref|NP_795558.1|putative single-strand DNA-binding protein 71 5e-11 ref|NP_108692.1|single-strand binding protein 70 7e-11 ref|NP_038310.1|ORF9 70 1e-10 ref|NP_040341.1|putative transposase 69 2e-10 ref|NP_058484.1|ssDNA binding protein 69 3e-10 ref|NP_835537.1|single-strand DNA-binding protein 68 4e-10 ref|NP_150144.1|putative SSB protein 67 6e-10 ref|NP_061608.1|single strand DNA binding protein 65 3e-09 ref|NP_076649.1|SSB 65 3e-09 ref|NP_663648.1|putative single stranded binding protein 65 4e-09 ref|NP_112664.1|INT 64 7e-09 ref|NP_612868.1|putative single stranded DNA binding protein 63 1e-08 ref|NP_061611.1|orf 21 60 1e-07 ref|NP_075485.1|hypothetical protein 59 3e-07 ref|NP_803371.1|dnaC 59 3e-07 ref|NP_690729.1|SSB protein 58 4e-07 ref|NP_046572.1|ABC transporter 58 4e-07 ref|NP_817551.1|gp102 57 6e-07 ref|NP_075481.1|ssDNA binding protein 55 2e-06 ref|NP_958645.1|77ORF013 55 2e-06 ref|NP_620626.1|putative transposase 55 4e-06 ref|NP_958623.1|77ORF007 54 7e-06 ref|NP_040813.1|integrase 54 7e-06 ref|NP_038305.1|ORF5 52 3e-05 ref|NP_813744.2|integrase 51 4e-05 ref|NP_075302.1|gp35 49 2e-04 ref|NP_852561.1|DNA integration 49 2e-04 ref|NP_061531.1|integrase 49 2e-04 ref|NP_862860.1|gp21 49 3e-04 ref|NP_075464.1|integrase 49 3e-04 ref|NP_058467.1|integrase 49 3e-04 ref|NP_803307.1|integrase 48 4e-04 ref|NP_046786.1|Int 47 6e-04 ref|NP_944257.1|putative DnaC 47 0.001 ref|NP_695040.1|putative replication protein DnaC 47 0.001 ref|YP_025047.1|putative integrase 47 0.001 ref|NP_536628.1|Int 47 0.001 ref|NP_536415.1|putative chromosome partitioning protein 46 0.001 ref|NP_945099.1|gp68 44 0.005 ref|NP_945251.1|DnaC protein 44 0.005 ref|NP_943914.1|hypothetical protein 44 0.005 ref|NP_839903.1|putative DnaC protein 43 0.012 ref|NP_958230.1|gene 56 protein 43 0.012 ref|NP_052278.1|Int 43 0.012 ref|NP_076710.1|DnaC 43 0.012 ref|NP_803254.1|integrase 43 0.016 ref|NP_891578.1|gp39.2 conserved hypothetical protein 43 0.016 ref|NP_958084.1|gp27 43 0.016 ref|NP_543070.1|putative replication protein DnaC 42 0.021 ref|NP_795384.1|Similar to E. coli DnaC protein 41 0.046 ref|NP_891600.1|Gp44 40 0.078 ref|NP_878228.1|Int 40 0.078 ref|NP_543053.1|putative integrase 40 0.078 ref|NP_839878.1|Int 40 0.078 ref|NP_116524.1|integrase 40 0.10 ref|NP_108680.1|integrase 40 0.10 ref|YP_025040.1|putative transposase A 40 0.10 ref|NP_076573.1|integrase 40 0.10 ref|NP_510917.1|similar to Escherichia coli DnaC 40 0.13 ref|NP_043466.1|integrase 39 0.17 ref|NP_795396.1|site-specific recombinase 39 0.23 ref|NP_536807.1|integrase 39 0.23 ref|NP_958267.1|hypothetical protein 39 0.23 ref|NP_695029.1|Integrase 39 0.23 ref|NP_892070.1|tail fiber protein 39 0.23 ref|NP_996675.1|integrase 39 0.23 ref|NP_076801.1|integrase 39 0.23 ref|NP_076651.1|DnaC 39 0.23 ref|NP_438114.1|integrase-like protein 39 0.30 ref|NP_795660.1|putative integrase 39 0.30 ref|NP_795541.1|putative integrase 39 0.30 ref|NP_817502.1|gp53 39 0.30 ref|NP_958556.1|putative integrase 39 0.30 ref|NP_690728.1|hypothetical protein 39 0.30 ref|YP_025058.1|DnaC 39 0.30 ref|NP_958506.1|putative integrase 38 0.39 ref|NP_042036.1|DNA primase 38 0.39 ref|NP_624303.1|integrase fragment 38 0.39 ref|NP_938213.1|A transposase 38 0.39 >ref|NP_932363.1|hypothetical protein Length = 389 Score = 356 bits (913), Expect = 6e-97 Identities = 196/363 (53%), Positives = 253/363 (69%), Gaps = 6/363 (1%) Frame = -1 Query: 155179 ERQRQEAHIELIASENYTSPRVLEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEQLAISR 155000 E RQ + LIASENY S V++AQGS+ TNKYAEGYPGKRYYGGC D +E LAI R Sbjct: 13 EAMRQYCEVCLIASENYVSDDVMKAQGSIFTNKYAEGYPGKRYYGGCVKADEIENLAIER 72 Query: 154999 AKALFNADFANVQPHSGSQANAAVYLALLTPGDTILGMSLAHGGHLTHGAKVSFSGKVFN 154820 AK LF+ +FANVQPHSGSQAN AVY ALL PGD++L MSL GGHLTHG K + SGK+++ Sbjct: 73 AKELFSCNFANVQPHSGSQANQAVYQALLKPGDSVLAMSLDCGGHLTHGHKANASGKIYD 132 Query: 154819 AVQYGVDATTGLIDYDE-IERLALEHRPKMIVAGFSAYSRVLDFARFRAIAD---KVGAY 154652 YGV + G I+ ++ +E++ K++V G+SAY ++ A + IAD +GA Sbjct: 133 FHHYGV-FSDGTININQVVEQIRTIPDLKLVVIGYSAYVGRINEATYAKIADAAHSIGAK 191 Query: 154651 LFVDMAHVAGLVAAGLYPNPVPF-ADVVTTTTHKTLRGPRGGLILARANEEIEKKLNSMV 154475 L VDMAH AG VAA L+ NP+ + ADVVTTTTHKTLRGPRGGLIL + +I KK+NS + Sbjct: 192 LMVDMAHFAGFVAARLHANPLKWGADVVTTTTHKTLRGPRGGLILTN-DADIAKKVNSAI 250 Query: 154474 FPGTQGGPLMHXXXXXXXAFKEALGPEFVTYQKQTLANARAMVEVFNARGYDVVSGGTDD 154295 FPG QGGPL+H F EAL ++V Y Q NA M E F+A G+ +V G T++ Sbjct: 251 FPGIQGGPLLHVIAAKAVCFGEALREDYVDYMIQVAHNASIMYETFDAAGHKLV-GFTEN 309 Query: 154294 HLFLVSLVKK-GITGKDADAALGRAHITVNKNTVPNDPQSPFVTSGIRIGTPAITTRGFL 154118 H L++ + G+TG++A+ L + I VNKN +PND +SP TSGIRIG+PA+TTRG++ Sbjct: 310 HQVLLNTYESFGLTGREAEQLLEKEGIIVNKNMLPNDTRSPVETSGIRIGSPAMTTRGWV 369 Query: 154117 EAD 154109 E+D Sbjct: 370 ESD 372 >ref|NP_050655.1|Gin Length = 193 Score = 232 bits (591), Expect = 1e-59 Identities = 115/181 (63%), Positives = 141/181 (77%) Frame = +3 Query: 94695 MLIGYARVSTQDQNLELQREALSKAGCKKVFEDKVSGTRADRPGLAKTLEMLREGDTLVV 94874 MLIGY RVST DQN +LQR AL AGC+++FEDK+SGTR DRPGL + L+ L++GDTLVV Sbjct: 1 MLIGYVRVSTNDQNTDLQRNALVCAGCEQIFEDKLSGTRTDRPGLKRALKRLQKGDTLVV 60 Query: 94875 WKLDRLGRSVKQLVDLVGDLHKHGVQFRSLTDSIDTGTPSGRFFFHVMASLAEMERELTV 95054 WKLDRLGRS+K L+ LVG+L + G+ FRSLTDSIDT +P GRFFFHVM +LAEMEREL + Sbjct: 61 WKLDRLGRSMKHLISLVGELRERGINFRSLTDSIDTSSPMGRFFFHVMGALAEMERELII 120 Query: 95055 ERTRAGLEVAKQLGRKGGRKPKMTDSKIESAKKLLASGVPPKDVAKNLGVSIPTLYRWVP 95234 ERT AGL A+ GR GGR PK+T ++ E A +LLA G+P K VA V++ TLY+ P Sbjct: 121 ERTMAGLAAARNKGRIGGRPPKLTKAEWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHP 180 Query: 95235 A 95237 A Sbjct: 181 A 181 Score = 201 bits (512), Expect = 2e-50 Identities = 98/157 (62%), Positives = 123/157 (78%) Frame = -2 Query: 45168 AGCKKVFEDKVSGTRADRPGLAKTLEMLREGDTLVVWKLDRLGRSVKQLVDLVGDLHKHG 44989 AGC+++FEDK+SGTR DRPGL + L+ L++GDTLVVWKLDRLGRS+K L+ LVG+L + G Sbjct: 25 AGCEQIFEDKLSGTRTDRPGLKRALKRLQKGDTLVVWKLDRLGRSMKHLISLVGELRERG 84 Query: 44988 VQFRSLTDSIDTGTPSGRFFFHVMASLAEMERELTVERTRAGLEVAKQLGRKGGRKPKMT 44809 + FRSLTDSIDT +P GRFFFHVM +LAEMEREL +ERT AGL A+ GR GGR PK+T Sbjct: 85 INFRSLTDSIDTSSPMGRFFFHVMGALAEMERELIIERTMAGLAAARNKGRIGGRPPKLT 144 Query: 44808 DSKIESAKKLLASGVPPKDVAKNLGVSIPTLYRWVPA 44698 ++ E A +LLA G+P K VA V++ TLY+ PA Sbjct: 145 KAEWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPA 181 Score = 132 bits (331), Expect = 2e-29 Identities = 84/187 (44%), Positives = 111/187 (59%), Gaps = 2/187 (1%) Frame = -2 Query: 84048 MLIGYMRVSKADGSQATDLQRDALIANGVDPAHLYEDQASGKREDRPGLVSCLKALRPGD 83869 MLIGY+RVS D Q TDLQR+AL+ G + ++ED+ SG R DRPGL LK L+ GD Sbjct: 1 MLIGYVRVSTND--QNTDLQRNALVCAGCE--QIFEDKLSGTRTDRPGLKRALKRLQKGD 56 Query: 83868 TLVVWKLDRLGRDLRHLINTVHDMTGRGIGLKVLTGHGAAIDTTTAAGKLVFGIFAALAE 83689 TLVVWKLDRLGR ++HLI+ V ++ RGI + LT +IDT++ G+ F + ALAE Sbjct: 57 TLVVWKLDRLGRSMKHLISLVGELRERGINFRSLTD---SIDTSSPMGRFFFHVMGALAE 113 Query: 83688 FERELIAERTIXXXXXXXXXXXXXXRPFKMTAAKLRLA--MAAMGQPETKVGDLCQELGI 83515 ERELI ERT+ RP K+T A+ A + A G P +V + + Sbjct: 114 MERELIIERTMAGLAAARNKGRIGGRPPKLTKAEWEQAGRLLAQGIPRKQVALI---YDV 170 Query: 83514 TRQTLYR 83494 TLY+ Sbjct: 171 ALSTLYK 177 >ref|NP_818250.1|gp199 Length = 1131 Score = 227 bits (579), Expect = 3e-58 Identities = 257/939 (27%), Positives = 398/939 (42%), Gaps = 104/939 (11%) Frame = -1 Query: 260404 AELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMALII 260225 A L + S L G SR EE ARA + G ++AITD + G R +AA + ++ Sbjct: 6 AALHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVL 65 Query: 260224 GSHFR--LTAADG-------APALAFTALAMNRDGYGNLCEFISLGRMRGKKGTYRLAPL 260072 G+ R L AD + + LA N G NL SL + Y+ L Sbjct: 66 GAEQRWMLNIADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYE--PEQFYKKPQL 123 Query: 260071 DLEHPEAPYTHLRGL---PDCIAILSPDFPANEQRLDAQVEW--FARVFGDRAWVAL--- 259916 D P + GL C+ D+ N+Q A+ EW +FGD + L Sbjct: 124 D---PGLLMQYRDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTW 180 Query: 259915 -----------TLHARAMDDIHRGVVERVAARHGVP-VVATSWPLMHVRS---RKPLQDV 259781 L+AR M I+ V R+A GVP VV H R + + D+ Sbjct: 181 QFINPVSPEQQALNAR-MSKINLAKV-RLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDM 238 Query: 259780 LTGIRVGRPVSECGY--ELAPNAERHLRSRLRLANLYPAGALEETVR----VARRCTFSL 259619 TG E G+ + NA+ +R + L + +EE +R +A +C + Sbjct: 239 STGSWKKDQHEERGHAADWMMNADE-IRHYMGLHGV-GTSVIEEAMRNSGWIADQCNAEI 296 Query: 259618 DDLKYEYPDELVPAGTDPATYLREQTYIGARRRFPAGIPIDVQAQ-IEHELQLIADLKYE 259442 D P D A + R R G+P DV Q +E+E +LI D Sbjct: 297 DGKLLAMPRLHATDAEDAAAFRRAIEEGFKRFVVDKGLPEDVYRQRLEYEAKLIIDKNMA 356 Query: 259441 AYFLTVYDIVQFARE-------------QGILC-QGRGSAANSSVCYCLGVTEVDPSRQS 259304 YF V D V AR + LC GRGSA S V Y +G+T +DP + Sbjct: 357 GYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKYD 416 Query: 259303 MLFERFISKERNEPPDIDVDFEHQRREEVMQYIYRKYGRDRAALTAAVTTYRPRSALREA 259124 ++FERFI+ +R + PDIDVDF+ ++ V QY+ ++YG + T RPR L++ Sbjct: 417 LMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQDL 476 Query: 259123 GKALGVDPAIVDRVAKQHHWFDSRADLLQRFSEAGLDPDAP--------LNQQWAAFA-- 258974 +A G+ + ++ D A + E D D P + + A +A Sbjct: 477 CRAQGIPFGEMKKMIDLVEQVDQIAP-FEEGMELPEDEDPPTWGEVLQEIGGELAPYAKK 535 Query: 258973 --------AQLLGYPRHLSQHSGGFVISRGKL-TRLVPVENAAMEDRSIIQWDKDDIEAL 258821 Q++ R + H G +++ + L+P D Q+D ++E L Sbjct: 536 YPDLFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELEEL 595 Query: 258820 GILKIDVLALGMLSMVRRALDMISEKRGETFELQ----DIP--------------AEDKA 258695 G +K D+LA L ++ A D+I E+ G + IP D A Sbjct: 596 GGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVITLNEERYLNDPA 655 Query: 258694 TYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQ-GGMVHPFLRR 258518 YD + G + G+FQV + A + R RP+ D+ +I RPG + G++ ++ R Sbjct: 656 IYDQIDRGQTAGLFQVNTPAGTKLAMRFRPRSVVDMADLASINRPGVTRVPGLLDKYIER 715 Query: 258517 RQGLEPVTFPSEGME-----KALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAA 258353 R G E VT+ ME + T G+ ++QEQ+++ A AGF+ GEA++LR+ + Sbjct: 716 RHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGIGK 775 Query: 258352 WKRK--GGLEPYHERLVSG------MLERGYDREFAESIFAQIKGFGEYGFPESHAASFA 258197 K + LEP + + G + +G R+ A+ I+ +K G Y F +SH +A Sbjct: 776 KKMEIINELEP---KFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYA 832 Query: 258196 LLVYSSAWLRRHEPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSAL 258017 L AW++ + F+ L + + L++ R+R VLP DVN S L Sbjct: 833 LQPCQEAWVKHYYFDEFITGCL---VIHTDKTIRFLRECRQRKRAVLPPDVNQSGAGFTL 889 Query: 258016 EGPATSAPVRLGFSLLRGMREDVAGRIELARAARPFVDV 257900 T +R G + + G+ + I A RPF D+ Sbjct: 890 ----TDEGIRFGLTDISGIGDAAMPDI---LANRPFKDL 921 >ref|YP_006499.1|Cin Length = 186 Score = 224 bits (570), Expect = 4e-57 Identities = 113/183 (61%), Positives = 135/183 (73%) Frame = +3 Query: 94695 MLIGYARVSTQDQNLELQREALSKAGCKKVFEDKVSGTRADRPGLAKTLEMLREGDTLVV 94874 MLIGY RVST +QN LQR AL AGC+ +FEDK SG +A+RPGL K L ML GDTLVV Sbjct: 1 MLIGYVRVSTNEQNTALQRNALESAGCELIFEDKASGKKAERPGLKKVLRMLSRGDTLVV 60 Query: 94875 WKLDRLGRSVKQLVDLVGDLHKHGVQFRSLTDSIDTGTPSGRFFFHVMASLAEMERELTV 95054 WKLDRLGRS++ LV LV +L G+ FRSLTDSIDT TP GRFFFHVM +LAEMEREL V Sbjct: 61 WKLDRLGRSMRHLVVLVEELRDRGINFRSLTDSIDTSTPMGRFFFHVMGALAEMERELIV 120 Query: 95055 ERTRAGLEVAKQLGRKGGRKPKMTDSKIESAKKLLASGVPPKDVAKNLGVSIPTLYRWVP 95234 ERTRAGL+ A+ GR GGR+PK + + ++LL G+P K VA V++ TLY+ P Sbjct: 121 ERTRAGLDAARAEGRIGGRRPKYQEETWQQMRRLLEKGIPRKQVAIIYDVAVSTLYKKFP 180 Query: 95235 AST 95243 AS+ Sbjct: 181 ASS 183 Score = 196 bits (498), Expect = 9e-49 Identities = 98/168 (58%), Positives = 122/168 (72%) Frame = -2 Query: 45195 SVRPQTLSKAGCKKVFEDKVSGTRADRPGLAKTLEMLREGDTLVVWKLDRLGRSVKQLVD 45016 +++ L AGC+ +FEDK SG +A+RPGL K L ML GDTLVVWKLDRLGRS++ LV Sbjct: 16 ALQRNALESAGCELIFEDKASGKKAERPGLKKVLRMLSRGDTLVVWKLDRLGRSMRHLVV 75 Query: 45015 LVGDLHKHGVQFRSLTDSIDTGTPSGRFFFHVMASLAEMERELTVERTRAGLEVAKQLGR 44836 LV +L G+ FRSLTDSIDT TP GRFFFHVM +LAEMEREL VERTRAGL+ A+ GR Sbjct: 76 LVEELRDRGINFRSLTDSIDTSTPMGRFFFHVMGALAEMERELIVERTRAGLDAARAEGR 135 Query: 44835 KGGRKPKMTDSKIESAKKLLASGVPPKDVAKNLGVSIPTLYRWVPAST 44692 GGR+PK + + ++LL G+P K VA V++ TLY+ PAS+ Sbjct: 136 IGGRRPKYQEETWQQMRRLLEKGIPRKQVAIIYDVAVSTLYKKFPASS 183 Score = 121 bits (303), Expect = 3e-26 Identities = 69/130 (53%), Positives = 89/130 (68%) Frame = -2 Query: 84048 MLIGYMRVSKADGSQATDLQRDALIANGVDPAHLYEDQASGKREDRPGLVSCLKALRPGD 83869 MLIGY+RVS + Q T LQR+AL + G + ++ED+ASGK+ +RPGL L+ L GD Sbjct: 1 MLIGYVRVSTNE--QNTALQRNALESAGCEL--IFEDKASGKKAERPGLKKVLRMLSRGD 56 Query: 83868 TLVVWKLDRLGRDLRHLINTVHDMTGRGIGLKVLTGHGAAIDTTTAAGKLVFGIFAALAE 83689 TLVVWKLDRLGR +RHL+ V ++ RGI + LT +IDT+T G+ F + ALAE Sbjct: 57 TLVVWKLDRLGRSMRHLVVLVEELRDRGINFRSLTD---SIDTSTPMGRFFFHVMGALAE 113 Query: 83688 FERELIAERT 83659 ERELI ERT Sbjct: 114 MERELIVERT 123 >ref|NP_944246.1|putative single-strand DNA binding protein Length = 169 Score = 193 bits (491), Expect = 6e-48 Identities = 90/108 (83%), Positives = 102/108 (94%) Frame = +3 Query: 200475 MASVNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKDKASGDFKEMTEWHRISFFG 200654 MASVNKVI+VGNLGADPEVRYLPSGDAVAN+R+ATTDRYKDKASGD KE TEWHR+SFFG Sbjct: 1 MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDIKEATEWHRVSFFG 60 Query: 200655 RLAEIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQMQML 200798 RLAEI E+L+KG+S+Y+EGRI+TRKWQ Q GQDRY+TEIVAD+MQML Sbjct: 61 RLAEIVDEHLRKGASVYIEGRIKTRKWQDQSGQDRYTTEIVADRMQML 108 >ref|YP_025041.1|putative transposase B Length = 280 Score = 164 bits (415), Expect = 4e-39 Identities = 100/280 (35%), Positives = 145/280 (51%), Gaps = 6/280 (2%) Frame = -2 Query: 82749 MCRVLGVSVSGYYAWRKRGPSERTQQEPRLEAEVLAAHQRTRESFGPERLKQHLD----E 82582 MCR+LGVS + YY +R PS+R ++ L+ +L ++ +G ++ L+ Sbjct: 1 MCRILGVSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQP 60 Query: 82581 XXXXXXXXXXXXXXXXXXXXXXXXXRFKATTNSKHDLPVAPNLLNQDFSVTAPNQAWCGD 82402 ++KA + SK + PNLL QDFS T NQ W D Sbjct: 61 LQLRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTAD 120 Query: 82401 ITYIATDE-GWLYLAGLKDLYSGEIVGYAMSERMTKNLVMQALFRAVATRRPPAGLIHHS 82225 +TYI T GW YL+ + DL+S I+GY+ S++M +LV++ L AV R LI H+ Sbjct: 121 MTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIHT 180 Query: 82224 DRGSQYCALAYQALIGQFDMRASMSRRGNCYDNAPIESFWGTLKNELVYH-QRFATREQA 82048 D GSQY + Y + + +R S SR+G YDNAP+ESF +LK E VY F E A Sbjct: 181 DLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETA 240 Query: 82047 RLAISEYIEIFYNRQRTQARLNYQSPVAFTQRFYLNQIAA 81928 + EY+ FYNR+R + L YQ+P+ +Q+AA Sbjct: 241 AAVLFEYVHAFYNRKRIHSSLGYQTPLQVEIATLTSQMAA 280 Score = 164 bits (415), Expect = 4e-39 Identities = 100/280 (35%), Positives = 145/280 (51%), Gaps = 6/280 (2%) Frame = -1 Query: 46039 MCRVLGVSVSGYYAWRKRGPSERTQQEPRLEAEVLAAHQRTRESFGPERLKQHLD----E 45872 MCR+LGVS + YY +R PS+R ++ L+ +L ++ +G ++ L+ Sbjct: 1 MCRILGVSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQP 60 Query: 45871 XXXXXXXXXXXXXXXXXXXXXXXXXRFKATTNSKHDLPVAPNLLNQDFSVTAPNQAWCGD 45692 ++KA + SK + PNLL QDFS T NQ W D Sbjct: 61 LQLRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTAD 120 Query: 45691 ITYIATDE-GWLYLAGLKDLYSGEIVGYAMSERMTKNLVMQALFRAVATRRPPAGLIHHS 45515 +TYI T GW YL+ + DL+S I+GY+ S++M +LV++ L AV R LI H+ Sbjct: 121 MTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIHT 180 Query: 45514 DRGSQYCALAYQALIGQFDMRASMSRRGNCYDNAPIESFWGTLKNELVYH-QRFATREQA 45338 D GSQY + Y + + +R S SR+G YDNAP+ESF +LK E VY F E A Sbjct: 181 DLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETA 240 Query: 45337 RLAISEYIEIFYNRQRTQARLNYQSPVAFTQRFYLNQIAA 45218 + EY+ FYNR+R + L YQ+P+ +Q+AA Sbjct: 241 AAVLFEYVHAFYNRKRIHSSLGYQTPLQVEIATLTSQMAA 280 Score = 45.8 bits (107), Expect = 0.002 Identities = 56/266 (21%), Positives = 107/266 (40%), Gaps = 25/266 (9%) Frame = +1 Query: 158461 CRLVGLSRSVLHYDAKPDH-----ENEVLAARLVELAHE-RRRFGYRRLHALVERE---- 158610 CR++G+SR+ + P E+ L R++ + E ++R+G ++H + E Sbjct: 2 CRILGVSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQPL 61 Query: 158611 GTHANHKRIYRLYREAGL-----------AVRRRRKRHGVMIEREQLALPGAPNEVWSID 158757 + +RI RL +E + + + + + ++ + G N+ W+ D Sbjct: 62 QLRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGL-NQKWTAD 120 Query: 158758 FVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHGISGLYVARALDRAARFRGYPK--AVRT 158931 T++D ++ + + V + L+ A + R + T Sbjct: 121 MTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIHT 180 Query: 158932 DQGPEFTSRALDQWAYANGVALKLIQAGKPTQNAYIESFNGKFRDECLNE-HWFTTLAHA 159108 D G ++TS +Q + + G P NA +ESF+ + EC+ F A Sbjct: 181 DLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETA 240 Query: 159109 RAVIAAW-RQDYNEQRPHSALNYLAP 159183 AV+ + YN +R HS+L Y P Sbjct: 241 AAVLFEYVHAFYNRKRIHSSLGYQTP 266 Score = 45.8 bits (107), Expect = 0.002 Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Frame = -1 Query: 5116 NAPIESVWGSLKNELVYHQR-FATREQARHSISEYIEIFYNRQRTQARLNYQSPV 4955 NAP+ES SLK E VY F E A + EY+ FYNR+R + L YQ+P+ Sbjct: 213 NAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTPL 267 >ref|NP_818618.1|gp80 Length = 1111 Score = 161 bits (407), Expect = 3e-38 Identities = 219/931 (23%), Positives = 369/931 (39%), Gaps = 95/931 (10%) Frame = -1 Query: 260407 YAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMALI 260228 + + FS+ + ARA +LG A+ ++ ++ + E K + I Sbjct: 3 FVSFHTHNTFSYADALGMPSIHAARAEELGMWALGTSNHGNVNDHAQFERECKERGIKPI 62 Query: 260227 IGSHFRLTAADGAPALA----FTALAMNRDGYGNLCEFISLGRMRGKKGTYRLAPLDLEH 260060 G + T AMN GY NL I+ + Y+ + E+ Sbjct: 63 FGCEIYFSPVGEEDKTRRKTHLTIFAMNEIGYRNLNRIITQSYV----DAYQWPTVSWEN 118 Query: 260059 PEAPYTHLRGLPDCI-AILSPDFPAN----EQRLDA----------QVEWFARVFGDRAW 259925 EA + + L C ++LS EQR Q++ + VFG+R Sbjct: 119 LEANHEGILVLSGCADSLLSCTLLGGKYLGEQRSHVTDDDMDNARRQIQRYLDVFGNR-- 176 Query: 259924 VALTLHARAMDDIHRGV---VERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRP 259754 AL + D R + + ++ GVP+VAT+ + LQ +L R Sbjct: 177 FALEVQRFPHYDRTRALNPAIAELSRDTGVPLVATADVHYPFPEQNKLQALLHAARWKSS 236 Query: 259753 ---VSECGYELAPNAERHLRSRLRLANLYPAG--------ALEETVRVARRCTFSLDD-- 259613 +E +E + N L + +L G A++ T +A RCT L Sbjct: 237 PDFAAEASWEHSANLTYPLSDKEIHDDLVATGLDSADAWKAIQYTSILAERCTVELPKAK 296 Query: 259612 -LKYEYPDELVPAGTDPATYLREQTYIGARRRFPAGIPIDVQAQIEHELQLIADLKYEAY 259436 L++ L + Y A+R A + ++++E ++I D + Y Sbjct: 297 PLRFVCDKGLTAKQQLSREIAKGWKYRVAQRPDMARRKAEYVKRLQYEFKIITDKDFGDY 356 Query: 259435 FLTVYDIVQFAREQGI-LCQGRGSAANSSVCYCLGVTEVDPSR---QSMLFERFISKERN 259268 FL + D+V+ A+++ I + RGSAA S + Y L +TE+DP M+FERFI R+ Sbjct: 357 FLVISDLVRRAKDKSIDVGPARGSAAASLISYLLRITEIDPLHPLFNKMVFERFIDPFRS 416 Query: 259267 EPPDIDVDFEHQRREEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKA----LGVDP 259100 + PDID+DF+ ++R E+ YG + A A T Y ++ L++ +A L Sbjct: 417 DYPDIDLDFDDEKRWEIELDAKNLYGPENVASVANNTGYHGKNTLKDVARAYKLPLETFK 476 Query: 259099 AIVDRVAKQHHWFDSRADLLQRFSEA-GLDPD-APLNQQWAAFAAQLL--------GYPR 258950 AI R + D R D + E+ P+ A L + A A + G Sbjct: 477 AIAKRTTVRVETDDKRNDSISDVLESYATHPEIAGLIEAHADKLAMAVALESGNGDGNLH 536 Query: 258949 HLSQHSGGFVISRGKLTRLVPV------ENAAMEDRSIIQWDKDDIEALGILKIDVL--- 258797 S H+ GFVI+ + + + + +I +DK D E+LG+LK+D L Sbjct: 537 SSSVHACGFVIASDPIPDVCAIYLKDKGSGSKKTKVQVIPYDKRDAESLGMLKVDFLGSA 596 Query: 258796 ALGMLSMVR----------------------RALDMISEKRGETFELQDIPAEDKATYDM 258683 +G + ++R R I E G+ ++ Sbjct: 597 TMGAIGLMRKWSRVELEELYLSIYKDYDRWIRVQKRIKESGGKRVGFTANRFDN--ILKR 654 Query: 258682 LCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPFLRRRQGLE 258503 + D +G+ Q E + ++P F +L A+ RPGP GG ++ + G + Sbjct: 655 FRNDDVVGIMQFEGGTTRQVCRNVQPVDFDELAACTALSRPGPYYGGQYTDYVAVKNGEK 714 Query: 258502 P-VTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKRKGGLEP 258326 +G ++ +A T G ++QEQ+M + AGF E ++R+ + + E Sbjct: 715 DWARIHPKGFDRHVAFTFGQIVYQEQIMWILRDLAGFDNAEVLRVRKIIGKKLGEFQFEA 774 Query: 258325 YHERLVSGMLER-GYDREFAESIFAQIKGFGEYGFPESHAASFALLVYSSAWLRRHEPAV 258149 + + G + G D + A +F I+ Y F +HA S+AL+ Y + Sbjct: 775 IKQAFIDGCAQTCGVDPDTALRVFGAIRTAAGYAFNIAHAYSYALIAYWQMGFKMDHTTE 834 Query: 258148 FLAALLNSQPMG---FYTPSQLLQDARRRGVEVLPVDVNVS--TWDSALEGPATS---AP 257993 F A+ L G + +LQDA + + D+N+S W + A S Sbjct: 835 FFASTLYKNGDGKKEIPRRTAVLQDAEAHRIGIGGWDLNLSGANWRPYYDHSAHSRNLGT 894 Query: 257992 VRLGFSLLRGMREDVAGRIELARAARPFVDV 257900 V GF + G+ E A I R P+ D+ Sbjct: 895 VMPGFQQIPGIAEATAKAILDWRDNLPWQDI 925 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 157 bits (397), Expect = 4e-37 Identities = 93/286 (32%), Positives = 143/286 (50%) Frame = -2 Query: 82797 KYGVIEQMRQDYPVPPMCRVLGVSVSGYYAWRKRGPSERTQQEPRLEAEVLAAHQRTRES 82618 ++ +I ++R YPV +C V GV S Y W+ R P + + L ++VL H + S Sbjct: 15 QFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNR-PEKPDGRRAVLRSQVLELHGISHGS 73 Query: 82617 FGPERLKQHLDEXXXXXXXXXXXXXXXXXXXXXXXXXRFKATTNSKHDLPVAPNLLNQDF 82438 G + + H+ PN L + F Sbjct: 74 AGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGG-HEHVAIPNYLERQF 132 Query: 82437 SVTAPNQAWCGDITYIATDEGWLYLAGLKDLYSGEIVGYAMSERMTKNLVMQALFRAVAT 82258 +VT PNQ WCGD+TYI T + W YLA + DL++ + VG+AMS L M+AL A T Sbjct: 133 AVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWET 192 Query: 82257 RRPPAGLIHHSDRGSQYCALAYQALIGQFDMRASMSRRGNCYDNAPIESFWGTLKNELVY 82078 R P G++ HSD+GS Y + ++ L+ ++ +R SMSRRGNC+DN+P+E F+ +LKNE + Sbjct: 193 RGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMP 252 Query: 82077 HQRFATREQARLAISEYIEIFYNRQRTQARLNYQSPVAFTQRFYLN 81940 + + +A AI++YI +Y+ R P R++ N Sbjct: 253 VVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKN 298 Score = 157 bits (397), Expect = 4e-37 Identities = 93/286 (32%), Positives = 143/286 (50%) Frame = -1 Query: 46087 KYGVIEQMRQDYPVPPMCRVLGVSVSGYYAWRKRGPSERTQQEPRLEAEVLAAHQRTRES 45908 ++ +I ++R YPV +C V GV S Y W+ R P + + L ++VL H + S Sbjct: 15 QFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNR-PEKPDGRRAVLRSQVLELHGISHGS 73 Query: 45907 FGPERLKQHLDEXXXXXXXXXXXXXXXXXXXXXXXXXRFKATTNSKHDLPVAPNLLNQDF 45728 G + + H+ PN L + F Sbjct: 74 AGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGG-HEHVAIPNYLERQF 132 Query: 45727 SVTAPNQAWCGDITYIATDEGWLYLAGLKDLYSGEIVGYAMSERMTKNLVMQALFRAVAT 45548 +VT PNQ WCGD+TYI T + W YLA + DL++ + VG+AMS L M+AL A T Sbjct: 133 AVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWET 192 Query: 45547 RRPPAGLIHHSDRGSQYCALAYQALIGQFDMRASMSRRGNCYDNAPIESFWGTLKNELVY 45368 R P G++ HSD+GS Y + ++ L+ ++ +R SMSRRGNC+DN+P+E F+ +LKNE + Sbjct: 193 RGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMP 252 Query: 45367 HQRFATREQARLAISEYIEIFYNRQRTQARLNYQSPVAFTQRFYLN 45230 + + +A AI++YI +Y+ R P R++ N Sbjct: 253 VVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKN 298 Score = 63.2 bits (152), Expect = 1e-08 Identities = 71/280 (25%), Positives = 113/280 (40%), Gaps = 22/280 (7%) Frame = +1 Query: 158461 CRLVGLSRSVLHY----DAKPDHENEVLAARLVEL-AHERRRFGYRRLHALVEREGTHAN 158625 C + G+ RS Y KPD VL ++++EL G R + + R G Sbjct: 32 CHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMG 91 Query: 158626 HKRIYRLYREAGLAV----RRRRKRHGVMIEREQLALPG---------APNEVWSIDFVM 158766 RL +E GL R KR G E +A+P PN+VW D Sbjct: 92 RWLAGRLMKELGLVSCQQPTHRYKRGG----HEHVAIPNYLERQFAVTEPNQVWCGDVTY 147 Query: 158767 DALSNGRRVKCLTVVDD-FTKEAVDIVVDHGISGLYVARALDRAARFRGYPKAV--RTDQ 158937 + G+R L VV D F ++ V + +AL+ A RG P V +DQ Sbjct: 148 --IWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQ 205 Query: 158938 GPEFTSRALDQWAYANGVALKLIQAGKPTQNAYIESFNGKFRDECLNEHWFTTLAHARAV 159117 G +TSR Q + + + + G N+ +E F ++E + + + + A Sbjct: 206 GSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHA 265 Query: 159118 IAAWRQD-YNEQRPHSALNYLAPSEFAAKHRATADTPAAF 159234 I + Y+ RPH L P+E ++ +++ A+F Sbjct: 266 ITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASF 305 >ref|NP_958203.1|gene 27 protein Length = 157 Score = 144 bits (362), Expect = 5e-33 Identities = 67/108 (62%), Positives = 87/108 (80%), Gaps = 3/108 (2%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKDKASGDFKEMTEWHRISFFGRLA 200663 VNKVII+G LG DPE+RY PSG A AN+ VAT+++++DK +G+ KE TEWHR+ G+LA Sbjct: 6 VNKVIIIGRLGHDPEIRYSPSGTAFANLTVATSEQWRDKQTGEQKEQTEWHRVVMSGKLA 65 Query: 200664 EIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEI---VADQMQML 200798 EIASEYL+KGS +Y+EG++RTRKWQ Q GQDR++TE+ V MQML Sbjct: 66 EIASEYLRKGSEVYLEGKLRTRKWQDQSGQDRFTTEVIVGVGGTMQML 113 >ref|NP_061653.1|transposase Length = 328 Score = 141 bits (356), Expect = 2e-32 Identities = 103/322 (31%), Positives = 150/322 (46%), Gaps = 2/322 (0%) Frame = -1 Query: 67144 YQHLSAEERATIMILLQQGCSARGIARTLRRSPSTITREIRRALQWPQRTAFVPAGSGGC 66965 Y HL+ ERA I +L Q+ S R IAR L+RS STI+REI R A + Sbjct: 16 YNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISRN----NLNQSYQAETAQK 71 Query: 66964 TYDXXXXXXXXXXXRLKRRRHPKLAEDGVLFGVVHHFLLEGWSPSQIAGTLKRMWPDDLD 66785 Y+ R P+L ++ ++L WSP QI G L L Sbjct: 72 NYETKRKLCGRPT-----RFTPELGN------IIKYYLKCHWSPEQIVGRL-------LQ 113 Query: 66784 RRVSHETIYNCIYAMPRGELRKELIACLRRAQAKRMPRSRGQDRRGQLPDAVSIHLRPPE 66605 ++ +TIY I + + ELI+CLR+ ++ P+ + RG+ I RP E Sbjct: 114 NQICFKTIYRWINS---NMINFELISCLRQKGKRQKPK----ETRGKFNIGRPISQRPKE 166 Query: 66604 ANERAFPGHWEGDLLKGAANRS--AXXXXXXXXXXXXXLAKLKDATAASALEGFTAKLRS 66431 +R GHWE D + + +S + D ++ S ++ Sbjct: 167 IKKRNTFGHWEADTIVSSRGKSKGCIATFAERKSRYYYCVLMPDRSSNSMETAINNLIKH 226 Query: 66430 IAEPMRKTLTYDRGKEMARHPELSEATGIRVYFCDPRSPWQRGSCENINGLLRQYLPKGT 66251 + + KT+T DRGKE + + + I VYF DP S WQRG+ EN NGLLR++ PK T Sbjct: 227 LPKGAVKTITVDRGKEFSCYQNIENQFNINVYFADPYSAWQRGTNENTNGLLREFFPKKT 286 Query: 66250 DLSVYSQEELDAIADRLNSRPR 66185 DL+ +QE+L+ D +N RPR Sbjct: 287 DLAKVNQEQLNYALDSINYRPR 308 Score = 141 bits (356), Expect = 2e-32 Identities = 103/322 (31%), Positives = 150/322 (46%), Gaps = 2/322 (0%) Frame = +2 Query: 253172 YQHLSAEERATIMILLQQGCSARGIARTLRRSPSTITREIRRALQWPQRTAFVPAGSGGC 253351 Y HL+ ERA I +L Q+ S R IAR L+RS STI+REI R A + Sbjct: 16 YNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISRN----NLNQSYQAETAQK 71 Query: 253352 TYDXXXXXXXXXXXXLKRRRHPKLAEDGVLFGVVHHFLLEGWSPSQIAGTLKRMWPDDLD 253531 Y+ R P+L ++ ++L WSP QI G L L Sbjct: 72 NYETKRKLCGRPT-----RFTPELGN------IIKYYLKCHWSPEQIVGRL-------LQ 113 Query: 253532 RRVSHETIYNCIYAMPRGELRKELIACLRRAQAKRMPRSRGQDRRGQLPDAVSIHLRPPE 253711 ++ +TIY I + + ELI+CLR+ ++ P+ + RG+ I RP E Sbjct: 114 NQICFKTIYRWINS---NMINFELISCLRQKGKRQKPK----ETRGKFNIGRPISQRPKE 166 Query: 253712 ANERAFPGHWEGDLLKGAANRS--AXXXXXXXXXXXXXXAKLKDATAASALEGFTAKLRS 253885 +R GHWE D + + +S + D ++ S ++ Sbjct: 167 IKKRNTFGHWEADTIVSSRGKSKGCIATFAERKSRYYYCVLMPDRSSNSMETAINNLIKH 226 Query: 253886 IAEPMRKTLTYDRGKEMARHPELSEATGIRVYFCDPRSPWQRGSCENINGLLRQYLPKGT 254065 + + KT+T DRGKE + + + I VYF DP S WQRG+ EN NGLLR++ PK T Sbjct: 227 LPKGAVKTITVDRGKEFSCYQNIENQFNINVYFADPYSAWQRGTNENTNGLLREFFPKKT 286 Query: 254066 DLSVYSQEELDAIADRLNSRPR 254131 DL+ +QE+L+ D +N RPR Sbjct: 287 DLAKVNQEQLNYALDSINYRPR 308 >ref|YP_164279.1|single-stranded DNA-binding protein Length = 167 Score = 141 bits (356), Expect = 2e-32 Identities = 65/108 (60%), Positives = 85/108 (78%), Gaps = 3/108 (2%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKDKASGDFKEMTEWHRISFFGRLA 200663 VNKVI+VG+LG DP+ R P G AV ++ +AT++ +KDK +G +E TEWHR+ FGRLA Sbjct: 5 VNKVILVGHLGQDPDARSTPGGKAVTSLSLATSESWKDKQTGQQQERTEWHRVVLFGRLA 64 Query: 200664 EIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVAD---QMQML 200798 EIA++YL+KGS +Y+EG +RTRKWQGQDGQD YSTE+V D MQ+L Sbjct: 65 EIAAQYLRKGSQVYIEGSLRTRKWQGQDGQDHYSTEVVVDINGNMQLL 112 >ref|YP_006485.1|Ssb Length = 162 Score = 135 bits (340), Expect = 2e-30 Identities = 59/108 (54%), Positives = 83/108 (76%), Gaps = 3/108 (2%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKDKASGDFKEMTEWHRISFFGRLA 200663 VNKVI++G LG DPE+RY+P+G AV + +AT + ++DK +G KE TEWH++ FG+LA Sbjct: 6 VNKVILIGTLGQDPEIRYIPNGGAVGRLSIATNESWRDKQTGQQKEQTEWHKVVLFGKLA 65 Query: 200664 EIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQ---MQML 200798 EIASEYL+KGS +Y+EG+++TRKW G +RY+TEI+ Q MQM+ Sbjct: 66 EIASEYLRKGSQVYIEGKLKTRKWTDDAGVERYTTEIIVSQGGTMQMI 113 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 132 bits (332), Expect = 2e-29 Identities = 82/287 (28%), Positives = 146/287 (50%), Gaps = 6/287 (2%) Frame = -2 Query: 82788 VIEQMRQDYPVPPMCRVLGVSVSGYYAWRKRGP-----SERTQQEPRLEAEVLAAHQRTR 82624 +++++R+ Y V P+C L ++ S YY +++ S R Q + L+ E+ + Sbjct: 4 LLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQHDDWLKREIQRVYDENH 63 Query: 82623 ESFGPERL-KQHLDEXXXXXXXXXXXXXXXXXXXXXXXXXRFKATTNSKHDLPVAPNLLN 82447 + +G ++ +Q L E + + T + K A + +N Sbjct: 64 QVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRK--AVAAGDRVN 121 Query: 82446 QDFSVTAPNQAWCGDITYIATDEGWLYLAGLKDLYSGEIVGYAMSERMTKNLVMQALFRA 82267 + F P+Q W D TY++T +G++Y+A + D+++G IVG+ +S M V+ AL +A Sbjct: 122 RQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQA 181 Query: 82266 VATRRPPAGLIHHSDRGSQYCALAYQALIGQFDMRASMSRRGNCYDNAPIESFWGTLKNE 82087 + RRP +G IHHSD+GSQY +LAY + + + AS G+ YDNA ES G K E Sbjct: 182 LWARRP-SGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAE 240 Query: 82086 LVYHQRFATREQARLAISEYIEIFYNRQRTQARLNYQSPVAFTQRFY 81946 +++ + + R + LA +++ +YN +R RL + P + +Y Sbjct: 241 VIHRKSWKNRAEVELATLTWVD-WYNNRRLLGRLGHTPPAEAEKAYY 286 Score = 132 bits (332), Expect = 2e-29 Identities = 82/287 (28%), Positives = 146/287 (50%), Gaps = 6/287 (2%) Frame = -1 Query: 46078 VIEQMRQDYPVPPMCRVLGVSVSGYYAWRKRGP-----SERTQQEPRLEAEVLAAHQRTR 45914 +++++R+ Y V P+C L ++ S YY +++ S R Q + L+ E+ + Sbjct: 4 LLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQHDDWLKREIQRVYDENH 63 Query: 45913 ESFGPERL-KQHLDEXXXXXXXXXXXXXXXXXXXXXXXXXRFKATTNSKHDLPVAPNLLN 45737 + +G ++ +Q L E + + T + K A + +N Sbjct: 64 QVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRK--AVAAGDRVN 121 Query: 45736 QDFSVTAPNQAWCGDITYIATDEGWLYLAGLKDLYSGEIVGYAMSERMTKNLVMQALFRA 45557 + F P+Q W D TY++T +G++Y+A + D+++G IVG+ +S M V+ AL +A Sbjct: 122 RQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQA 181 Query: 45556 VATRRPPAGLIHHSDRGSQYCALAYQALIGQFDMRASMSRRGNCYDNAPIESFWGTLKNE 45377 + RRP +G IHHSD+GSQY +LAY + + + AS G+ YDNA ES G K E Sbjct: 182 LWARRP-SGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAE 240 Query: 45376 LVYHQRFATREQARLAISEYIEIFYNRQRTQARLNYQSPVAFTQRFY 45236 +++ + + R + LA +++ +YN +R RL + P + +Y Sbjct: 241 VIHRKSWKNRAEVELATLTWVD-WYNNRRLLGRLGHTPPAEAEKAYY 286 Score = 53.9 bits (128), Expect = 7e-06 Identities = 51/216 (23%), Positives = 85/216 (39%), Gaps = 10/216 (4%) Frame = +1 Query: 158572 FGYRRLHALVEREGTHANHKRIYRLYREAGLAVRRRRKRHGVMIEREQLA---------L 158724 +G R++ + REG + RL GLA R K+ I R+ +A + Sbjct: 66 YGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFV 125 Query: 158725 PGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHGISGLYVARALDRAARF 158904 P+++W DF + G V ++D F V V + +V AL++A Sbjct: 126 AERPDQLWVADFTYVSTWQGF-VYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWA 184 Query: 158905 RGYPKAVR-TDQGPEFTSRALDQWAYANGVALKLIQAGKPTQNAYIESFNGKFRDECLNE 159081 R + +D+G ++ S A + G+ G NA ES NG ++ E ++ Sbjct: 185 RRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHR 244 Query: 159082 HWFTTLAHARAVIAAWRQDYNEQRPHSALNYLAPSE 159189 + A W YN +R L + P+E Sbjct: 245 KSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAE 280 Score = 40.0 bits (92), Expect = 0.10 Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 10/178 (5%) Frame = +2 Query: 1040 FGYRRLHALVEREGTHANHKRIYRLYREAGLAVRRRRKRHGVMIEREQLA---------L 1192 +G R++ + REG + RL GLA R K+ I R+ +A + Sbjct: 66 YGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFV 125 Query: 1193 PGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHGISGLYVARALDRAARF 1372 P+++W DF + G V ++D F V V + +V AL++A Sbjct: 126 AERPDQLWVADFTYVSTWQG-FVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWA 184 Query: 1373 RGYPKAV-RTGQGPEFTSRALDQWAYANGVALKLIQAGKPTQNAYIESFNGKFRDECL 1543 R + + +G ++ S A + G+ G NA ES NG ++ E + Sbjct: 185 RRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVI 242 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 125 bits (314), Expect = 2e-27 Identities = 81/270 (30%), Positives = 132/270 (48%), Gaps = 8/270 (2%) Frame = -2 Query: 82731 VSVSGY--YAWRKRGPSERTQQEPR---LEAEVLAAHQRTRESFGPERLKQHLDEXXXXX 82567 ++ SGY +A + R PS+R + R L+ E+ Q + +G ++ + ++ Sbjct: 3 IAPSGYRRHAAQLRDPSKRCARAKRDELLQPEIKRVWQANMQVYGVPKVWKQMNREGITV 62 Query: 82566 XXXXXXXXXXXXXXXXXXXXRFKATTNSKHDLPVAPNLLNQDFSVTAPNQAWCGDITYIA 82387 + TT + P + +N+ F PNQ W D TY++ Sbjct: 63 ARCTVGRLMKLQGLRGAVRGKRVRTTITDVTAPRPLDRVNRQFKADRPNQLWVSDFTYVS 122 Query: 82386 TDEGWLYLAGLKDLYSGEIVGYAMSERMTKNLVMQALFRAVATRRP--PAGLIHHSDRGS 82213 T +GWLY+A + D+++ IVG+ +S MT + V+ AL +A+ R+P LIHHSDRGS Sbjct: 123 TWQGWLYVAFVIDVFARRIVGWRVSSSMTTDFVLDALEQALYARQPGEDGTLIHHSDRGS 182 Query: 82212 QYCALAYQALIGQFDMRASMSRRGNCYDNAPIESFWGTLKNELVYHQR-FATREQARLAI 82036 QY ++ Y + + + S+ RG+ YDNA E+ G K EL++ + + TRE LA Sbjct: 183 QYVSIRYSERLAEAGIEPSVGSRGDSYDNALAETINGLYKTELIHRRAPWKTRESVELAT 242 Query: 82035 SEYIEIFYNRQRTQARLNYQSPVAFTQRFY 81946 E++ +YN R L Y P +Y Sbjct: 243 LEWV-AWYNHHRLMEPLGYIPPAEAEANYY 271 Score = 125 bits (314), Expect = 2e-27 Identities = 81/270 (30%), Positives = 132/270 (48%), Gaps = 8/270 (2%) Frame = -1 Query: 46021 VSVSGY--YAWRKRGPSERTQQEPR---LEAEVLAAHQRTRESFGPERLKQHLDEXXXXX 45857 ++ SGY +A + R PS+R + R L+ E+ Q + +G ++ + ++ Sbjct: 3 IAPSGYRRHAAQLRDPSKRCARAKRDELLQPEIKRVWQANMQVYGVPKVWKQMNREGITV 62 Query: 45856 XXXXXXXXXXXXXXXXXXXXRFKATTNSKHDLPVAPNLLNQDFSVTAPNQAWCGDITYIA 45677 + TT + P + +N+ F PNQ W D TY++ Sbjct: 63 ARCTVGRLMKLQGLRGAVRGKRVRTTITDVTAPRPLDRVNRQFKADRPNQLWVSDFTYVS 122 Query: 45676 TDEGWLYLAGLKDLYSGEIVGYAMSERMTKNLVMQALFRAVATRRP--PAGLIHHSDRGS 45503 T +GWLY+A + D+++ IVG+ +S MT + V+ AL +A+ R+P LIHHSDRGS Sbjct: 123 TWQGWLYVAFVIDVFARRIVGWRVSSSMTTDFVLDALEQALYARQPGEDGTLIHHSDRGS 182 Query: 45502 QYCALAYQALIGQFDMRASMSRRGNCYDNAPIESFWGTLKNELVYHQR-FATREQARLAI 45326 QY ++ Y + + + S+ RG+ YDNA E+ G K EL++ + + TRE LA Sbjct: 183 QYVSIRYSERLAEAGIEPSVGSRGDSYDNALAETINGLYKTELIHRRAPWKTRESVELAT 242 Query: 45325 SEYIEIFYNRQRTQARLNYQSPVAFTQRFY 45236 E++ +YN R L Y P +Y Sbjct: 243 LEWV-AWYNHHRLMEPLGYIPPAEAEANYY 271 Score = 46.6 bits (109), Expect = 0.001 Identities = 60/241 (24%), Positives = 98/241 (40%), Gaps = 22/241 (9%) Frame = +1 Query: 158572 FGYRRLHALVEREGTHANHKRIYRLYREAGL--AVRRRRKRHGVM----------IEREQ 158715 +G ++ + REG + RL + GL AVR +R R + + R+ Sbjct: 46 YGVPKVWKQMNREGITVARCTVGRLMKLQGLRGAVRGKRVRTTITDVTAPRPLDRVNRQF 105 Query: 158716 LALPGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHGISGLYVARALDRA 158895 A PN++W DF + G V+D F + V V ++ +V AL++A Sbjct: 106 KA--DRPNQLWVSDFTYVSTWQGWLYVAF-VIDVFARRIVGWRVSSSMTTDFVLDALEQA 162 Query: 158896 --ARFRGYPKAV--RTDQGPEFTSRALDQWAYANGVALKLIQAGKPTQNAYIESFNGKFR 159063 AR G + +D+G ++ S + G+ + G NA E+ NG ++ Sbjct: 163 LYARQPGEDGTLIHHSDRGSQYVSIRYSERLAEAGIEPSVGSRGDSYDNALAETINGLYK 222 Query: 159064 DECLNEH--WFTTLAHARAVIAAWRQDYNEQRPHSALNYLAPSEFAAKH----RATADTP 159225 E ++ W T + A + W YN R L Y+ P+E A + R AD Sbjct: 223 TELIHRRAPWKTRESVELATL-EWVAWYNHHRLMEPLGYIPPAEAEANYYRQLRNAADVS 281 Query: 159226 A 159228 A Sbjct: 282 A 282 Score = 43.5 bits (101), Expect = 0.009 Identities = 64/259 (24%), Positives = 94/259 (36%), Gaps = 18/259 (6%) Frame = -3 Query: 162695 RSTRPTDDTELVEEIQ-AHVAHLPTYGYRRIWALLRRSREMVGAPCINHKRVYRVMREHQ 162519 R R D L EI+ A++ YG ++W + R V A C V R+M+ Sbjct: 21 RCARAKRDELLQPEIKRVWQANMQVYGVPKVWKQMNREGITV-ARCT----VGRLMKLQG 75 Query: 162518 L--LLRRPGVR---------RDKHRHDGRVAVDRSNTRWCSDGFEFRCDDGTPLRVTFAL 162372 L +R VR R R + + DR N W SD F + L V F + Sbjct: 76 LRGAVRGKRVRTTITDVTAPRPLDRVNRQFKADRPNQLWVSD-FTYVSTWQGWLYVAFVI 134 Query: 162371 DCCDREAISWAATTGGHSGDVVRDVMLAAVEQRFGTTQTAQPIEWL--TDNGSAYIDHRT 162198 D R + W S + D +L A+EQ Q + + +D GS Y+ R Sbjct: 135 DVFARRIVGWRV-----SSSMTTDFVLDALEQALYARQPGEDGTLIHHSDRGSQYVSIRY 189 Query: 162197 RRFARELGLEPLTTPVRSPQSNGMAES----FVKTMKHNYVAYMDKPDAPTALSRLAAAF 162030 E G+EP N +AE+ + + H + + A A + Sbjct: 190 SERLAEAGIEPSVGSRGDSYDNALAETINGLYKTELIHRRAPWKTRESVELATLEWVAWY 249 Query: 162029 EHYNERHPHKALKYRSPRE 161973 H+ P L Y P E Sbjct: 250 NHHRLMEP---LGYIPPAE 265 >ref|YP_024435.1|hypothetical protein Length = 162 Score = 117 bits (294), Expect = 4e-25 Identities = 64/155 (41%), Positives = 81/155 (52%) Frame = +2 Query: 245618 MRRIGNITAFFGAADVFSNWHPCSFTFHDVTFNCGEQFMMYAKAMLFDDHATAEAILSST 245797 MR F+G D++SN++P F TFN EQ M+ KA F+D A IL++ Sbjct: 1 MRETREYIMFWGKEDIYSNFYPIKFKHQGRTFNNSEQAFMWRKARYFNDFQIAGEILNAK 60 Query: 245798 SPREQKRLGRSVRGFYEARWITAREKIMFVGCREKFRQNEALAIALRATGTSVLVEASPY 245977 +P K LGR VR F E +W R IM ++KF L VEASPY Sbjct: 61 NPNHAKSLGRKVRNFNEEQWNKVRYNIMVEVVKDKFMTTHLKQRILDTDVRKDFVEASPY 120 Query: 245978 DRIWGVGLGEQDPRIADPSAWLGLNLLGKALMHVR 246082 D+IWGVGL DP+I + S W G NLLGK + VR Sbjct: 121 DKIWGVGLKANDPKILEQSNWKGQNLLGKVMEDVR 155 >ref|NP_046685.1|putative DNA polymerase Length = 1305 Score = 103 bits (257), Expect = 8e-21 Identities = 130/576 (22%), Positives = 237/576 (41%), Gaps = 63/576 (10%) Frame = -1 Query: 259441 AYFLTVYDIVQFAREQ-----GILCQGRGSAANSSVCYCLGVTEVDPSRQSMLFERFISK 259277 +Y++TV +I+ + ++ RGSAA V Y L T+++P + + R I K Sbjct: 402 SYYITVREIINIIWDDECGGDSLVGAARGSAAGYLVNYLLDNTQINPMQYDLPHWRHIHK 461 Query: 259276 ERNEPPDIDVDFEHQRREEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPA 259097 R + PDID+D E +R+++++ + ++G R A T +SAL+ A + LG+D Sbjct: 462 SRPDLPDIDIDTEGSKRQKILKALRERFGDKRVLQIATFGTEGSKSALQTACRGLGIDND 521 Query: 259096 IVDRVA------KQHHWFDSRADLLQRFSEAGLDPDAPLNQQWAAF------AAQLLGYP 258953 I ++ + +W E G P ++ + A ++ G Sbjct: 522 ISQYLSGMIPFERGSNW--PLKHCFYGDKETGRKPIKEFIREVEQYPNLKETALKIEGLT 579 Query: 258952 RHLSQHSGGFVISRGKLTRLVPVENAAMEDRS---IIQWDKDDIEALGILKIDVLALGML 258782 S H+ G +I + T+ NA M+ I Q++ D EA+G +K D+L + L Sbjct: 580 NKRSSHAAGVIIFNDEYTK----SNAMMKTPKGAYITQFNMGDSEAMGSVKFDLLTIEAL 635 Query: 258781 SMVRRALDMISEK-----RGETFELQD-------IPAEDKATYDMLCDGDSMGVFQVESR 258638 +R LD + E +G E + I ED ++M +G+ M +FQ + Sbjct: 636 DKIRVTLDQLIENNEIEWQGSLKETYNKYIHPDVIEYEDDKLWEMAGNGEIMDLFQFSTE 695 Query: 258637 AQMSMLPRLRPQCFYDLVIEVAIVR-PGPVQGGMVHPFLRRRQGL----EPVT------F 258491 + +++P+ + + +++R + V +++ + L E +T Sbjct: 696 VGHQSVVKVKPKNLLEAAVTNSLMRLMSDGEEQPVDTYVKYKNNLNKWYEEMTRYGLSEK 755 Query: 258490 PSEGMEKALARTLGVPIFQEQVMQVAM--LAAGFSAGEADQLRRAMAAWKRKGGLEPYHE 258317 ME+ L GV QE VMQ+ M A F E++ LR+++A K++ L+ E Sbjct: 756 EIRVMERHLKDIYGVADTQEVVMQMVMDKDIANFDIKESNYLRKSIAK-KKEDVLKEVEE 814 Query: 258316 RLVSGMLERGYDREFAESIF-AQIKGFGEYGFPESHAASFALLVYSSAWLR-RHEPAVFL 258143 E G ++ Q K Y F H +++++ L R+ P + Sbjct: 815 LFFKKGKEIGTSDNLLNYVWNVQFKRQFGYSFSLLHTLAYSIIALQELNLNYRYNPLYWN 874 Query: 258142 AALLNSQPMGFYTP----------------SQLLQDARRRGVEVLPVDVNVSTWDSALEG 258011 A L G T + + + R+RG+++ D+N + D Sbjct: 875 TACLTVNSGGIDTEDTKDNKKTAATNYGKVASAIGNIRQRGIKIDLPDINKA--DFGFRT 932 Query: 258010 PATSAPVRLGFSLLRGMREDVAGRIELARAARPFVD 257903 + + G + G+ +DV I L R F D Sbjct: 933 DINNNSILFGLKGMNGIGDDVIHHIVLNRPYSDFND 968 >ref|NP_758949.1|ORF58 Length = 210 Score = 77.4 bits (189), Expect = 6e-13 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 2/181 (1%) Frame = +2 Query: 172298 EMGLVFAVANQXXXXXXXXXXINLAGAFHAAGYKPLVADADAQNSCLRWNAVADDGNPLP 172477 EM + A+ NQ N+A HA G+K L+ D D Q S W+ A++G+ Sbjct: 18 EMAKLIAILNQKGGAGKTTISTNVASQLHADGHKVLLVDLDPQGSATDWSEQAEEGS--- 74 Query: 172478 FKIVSVASHGKQIGSVITQLAEDSE-IVLVDCPPSIESPITARVLMVADATIIPTDSSPL 172654 + V V GK I ++A E +V VD P + + + A + AD +IPT SP Sbjct: 75 -EAVPVIRMGKTCTCDIHKVASGYEYLVSVDGAPQV-ADLAATAVRAADMVLIPTQPSPY 132 Query: 172655 DLWSSEGMIRLVEQTRAVQPN-GKYAILLNKANPKTQLHKQMKELLSESKVHLLSTTIKN 172831 D WS+ ++ +V+ + V K A ++++A +T+L ++KE L ++ +L Sbjct: 133 DCWSAAELVEIVKARQEVTDGIPKAAFIISRAIKRTKLEAEIKEALDYYELPILKNGTTQ 192 Query: 172832 R 172834 R Sbjct: 193 R 193 >ref|NP_817947.1|gp96 Length = 566 Score = 75.5 bits (184), Expect = 2e-12 Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 4/214 (1%) Frame = -3 Query: 128444 FADVAGVDEAKD-ELKEVVSFLKDPRSYGRLGAHVPKGVLLVGPPGTGKTLLARAVAGEA 128268 F +V G+D K+ +++ +++ + R+Y +PKG +L+G G GKTL +A+ E Sbjct: 281 FDNVGGLDVFKEWAIRQKIAYSPEARAYN---LKLPKGAMLIGVSGCGKTLSCQALGAEW 337 Query: 128267 GVAFFSISGSEFVEMFVGVGAARVRDLFEQARQHAPAIVFIDELDSLGRARGSALPGGGG 128088 + + +VG +R+R +F + IV+IDE++ +A A+ G Sbjct: 338 NWPVVRLDINALKGKYVGESESRLRGIFSKIDALGQVIVYIDEVE---KALEGAVSGSAD 394 Query: 128087 HDEKEQTLNQLLSELDGFDTSIGVVLLAATNRPEILDPALLRAGRFDRQVLVDRPDKKGR 127908 L +L+ + D + ++ N P L P LR GRFD +D P + R Sbjct: 395 GGVSADALGAILTWMQ--DRAGQAFVMMTANDPSKLPPEFLRKGRFDEVWWIDLPTRAER 452 Query: 127907 CEILAVHLK---KIRLASGVPVADIAALTPGFSG 127815 + A L+ + G+ + +A T GF+G Sbjct: 453 MSVAAATLRSNGRDAETLGIDLGAVADATNGFTG 486 >ref|NP_112675.1|SSB Length = 150 Score = 74.7 bits (182), Expect = 4e-12 Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 3/108 (2%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKD---KASGDFKEMTEWHRISFFG 200654 +N V++VG L DPE+RY P AV +A ++K+ + DF W + Sbjct: 2 INNVVLVGRLTRDPELRYTPQNQAVGTFGLAVNRQFKNANGEREADFINCVIWRQ----- 56 Query: 200655 RLAEIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQMQML 200798 AE +++ KKG+ I + GRI+TR ++ Q GQ Y TE+VAD QML Sbjct: 57 -QAENLAKFAKKGALIGITGRIQTRNYENQQGQKVYVTEVVADTFQML 103 >ref|NP_690785.1|site-specific recombinase for integration and excision Length = 474 Score = 74.7 bits (182), Expect = 4e-12 Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 16/144 (11%) Frame = +3 Query: 94707 YARVSTQDQ-----NLELQREALSKAGC--------KKVFEDKVSGTRADRPGLAKTLEM 94847 Y RVST++Q ++ Q+E L KA C K ++ S RP L L Sbjct: 15 YVRVSTEEQAKEGYSISAQKEKL-KAYCISQGWDSYKFYIDEGKSAKDIHRPSLELMLRH 73 Query: 94848 LREG--DTLVVWKLDRLGRSVKQLVDLVGDLHKHGVQFRSLTDSIDTGTPSGRFFFHVMA 95021 + +G DT++V++LDRL RSV+ L L+ K+ FRS T+ DTG+ +GR F ++A Sbjct: 74 IEQGIIDTVLVYRLDRLTRSVRDLYSLLDYFDKYQAVFRSATEVYDTGSATGRLFITLVA 133 Query: 95022 SLAEMERELTVERTRAG-LEVAKQ 95090 ++A+ ERE ER + G +E A+Q Sbjct: 134 AMAQWERENLGERVKMGQVEKARQ 157 Score = 67.4 bits (163), Expect = 6e-10 Identities = 39/94 (41%), Positives = 59/94 (62%), Gaps = 3/94 (3%) Frame = -2 Query: 45117 RPGLAKTLEMLREG--DTLVVWKLDRLGRSVKQLVDLVGDLHKHGVQFRSLTDSIDTGTP 44944 RP L L + +G DT++V++LDRL RSV+ L L+ K+ FRS T+ DTG+ Sbjct: 64 RPSLELMLRHIEQGIIDTVLVYRLDRLTRSVRDLYSLLDYFDKYQAVFRSATEVYDTGSA 123 Query: 44943 SGRFFFHVMASLAEMERELTVERTRAG-LEVAKQ 44845 +GR F ++A++A+ ERE ER + G +E A+Q Sbjct: 124 TGRLFITLVAAMAQWERENLGERVKMGQVEKARQ 157 Score = 49.3 bits (116), Expect = 2e-04 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 10/135 (7%) Frame = -2 Query: 84036 YMRVS---KADGSQATDLQRDAL----IANGVDPAHLYEDQA-SGKREDRPGLVSCLKAL 83881 Y+RVS +A + Q++ L I+ G D Y D+ S K RP L L+ + Sbjct: 15 YVRVSTEEQAKEGYSISAQKEKLKAYCISQGWDSYKFYIDEGKSAKDIHRPSLELMLRHI 74 Query: 83880 RPG--DTLVVWKLDRLGRDLRHLINTVHDMTGRGIGLKVLTGHGAAIDTTTAAGKLVFGI 83707 G DT++V++LDRL R +R L + + + T DT +A G+L + Sbjct: 75 EQGIIDTVLVYRLDRLTRSVRDLYSLLDYFDKYQAVFRSAT---EVYDTGSATGRLFITL 131 Query: 83706 FAALAEFERELIAER 83662 AA+A++ERE + ER Sbjct: 132 VAAMAQWERENLGER 146 >ref|NP_463492.1|putative integrase Length = 452 Score = 74.7 bits (182), Expect = 4e-12 Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 25/175 (14%) Frame = +3 Query: 94707 YARVSTQDQ----NLELQREALSKAGCKK-------VFEDK-VSGTRADRPGLAKTLEML 94850 Y RVSTQ+Q +++ Q E L+ A C+ +F D SG+ +RP L + L L Sbjct: 6 YIRVSTQEQVENYSIQAQTEKLT-ALCRSKDWDVYDIFIDGGYSGSNMNRPALNEMLSKL 64 Query: 94851 REGDTLVVWKLDRLGRSVKQLVDLVGDLH-KHGVQFRSLTDSIDTGTPSGRFFFHVMASL 95027 E D +VV++LDRL RS + + L+ + K+ V+F SL++++DT +P GR +++ Sbjct: 65 HEIDAVVVYRLDRLSRSQRDTITLIEEYFLKNNVEFVSLSETLDTSSPFGRAMIGILSVF 124 Query: 95028 AEMEREL--------TVERTRAGLEVAKQLGRKGGRKPKMTDSKI----ESAKKL 95156 A++ERE ++R AGL + GR G + D+K+ E AK+L Sbjct: 125 AQLERETIRDRMVMGKIKRIEAGLPLTTAKGRTFGY--DVIDTKLYINEEEAKQL 177 Score = 68.6 bits (166), Expect = 3e-10 Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 13/132 (9%) Frame = -2 Query: 45135 SGTRADRPGLAKTLEMLREGDTLVVWKLDRLGRSVKQLVDLVGDLH-KHGVQFRSLTDSI 44959 SG+ +RP L + L L E D +VV++LDRL RS + + L+ + K+ V+F SL++++ Sbjct: 48 SGSNMNRPALNEMLSKLHEIDAVVVYRLDRLSRSQRDTITLIEEYFLKNNVEFVSLSETL 107 Query: 44958 DTGTPSGRFFFHVMASLAEMEREL--------TVERTRAGLEVAKQLGRKGGRKPKMTDS 44803 DT +P GR +++ A++ERE ++R AGL + GR G + D+ Sbjct: 108 DTSSPFGRAMIGILSVFAQLERETIRDRMVMGKIKRIEAGLPLTTAKGRTFGY--DVIDT 165 Query: 44802 KI----ESAKKL 44779 K+ E AK+L Sbjct: 166 KLYINEEEAKQL 177 Score = 47.0 bits (110), Expect = 8e-04 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Frame = -2 Query: 83931 SGKREDRPGLVSCLKALRPGDTLVVWKLDRLGRDLRHLINTVHD-MTGRGIGLKVLTGHG 83755 SG +RP L L L D +VV++LDRL R R I + + + L+ Sbjct: 48 SGSNMNRPALNEMLSKLHEIDAVVVYRLDRLSRSQRDTITLIEEYFLKNNVEFVSLS--- 104 Query: 83754 AAIDTTTAAGKLVFGIFAALAEFERELIAERTI 83656 +DT++ G+ + GI + A+ ERE I +R + Sbjct: 105 ETLDTSSPFGRAMIGILSVFAQLERETIRDRMV 137 >ref|NP_076587.1|SSB protein Length = 150 Score = 72.8 bits (177), Expect = 1e-11 Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 3/108 (2%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKD---KASGDFKEMTEWHRISFFG 200654 +N V++VG L DPE+R+ P AV +A ++K+ + DF W + Sbjct: 2 INNVVLVGRLTRDPELRHTPQNQAVGTFGLAVNRQFKNANGEREADFINCVIWRQ----- 56 Query: 200655 RLAEIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQMQML 200798 AE +++ KKG+ I + GRI+TR ++ Q GQ Y TE+VAD QML Sbjct: 57 -QAENLAKFAKKGALIGITGRIQTRNYENQQGQKVYVTEVVADTFQML 103 >ref|NP_463525.1|putative SSB protein Length = 160 Score = 71.2 bits (173), Expect = 4e-11 Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 3/108 (2%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKDK---ASGDFKEMTEWHRISFFG 200654 +N+V++VG L DP++RY P+G AVA +A + ++ DF W + Sbjct: 2 MNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRMFTNQNGEREADFINCVVWRKP---- 57 Query: 200655 RLAEIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQMQML 200798 AE + +LKKGS V+GR++TR ++ DG+ + TE+VA+ +Q L Sbjct: 58 --AENVANFLKKGSMAGVDGRVQTRNYEDNDGKRVFVTEVVAESVQFL 103 >ref|NP_438126.1|single-strand binding protein Length = 139 Score = 70.9 bits (172), Expect = 5e-11 Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 3/108 (2%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKDK---ASGDFKEMTEWHRISFFG 200654 +N V++VG + D E+RY S AVA +A R+K++ DF W + Sbjct: 2 INNVVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQS---- 57 Query: 200655 RLAEIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQMQML 200798 AE + + KKG+ I V GRI+TR ++ Q GQ Y TE+VAD QML Sbjct: 58 --AENLANWAKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADNFQML 103 >ref|NP_795558.1|putative single-strand DNA-binding protein Length = 139 Score = 70.9 bits (172), Expect = 5e-11 Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 3/108 (2%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKDK---ASGDFKEMTEWHRISFFG 200654 +N V++VG + D E+RY S AVA +A R+K++ DF W + Sbjct: 2 INNVVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQS---- 57 Query: 200655 RLAEIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQMQML 200798 AE + + KKG+ I V GRI+TR ++ Q GQ Y TE+VAD QML Sbjct: 58 --AENLANWAKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADNFQML 103 >ref|NP_108692.1|single-strand binding protein Length = 150 Score = 70.5 bits (171), Expect = 7e-11 Identities = 39/105 (37%), Positives = 63/105 (60%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKDKASGDFKEMTEWHRISFFGRLA 200663 +N V++VG L DPE+R+ P AV +A ++K+ A+G+ + + + + A Sbjct: 2 INNVVLVGRLTRDPELRHTPQNQAVGTFGLAVNRQFKN-ANGERE--ADLINCVIWRQQA 58 Query: 200664 EIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQMQML 200798 E +++ KKG+ I + GRI+TR ++ Q GQ Y TE+VAD QML Sbjct: 59 ENLAKFAKKGALIGITGRIQTRNYENQQGQKVYVTEVVADTFQML 103 >ref|NP_038310.1|ORF9 Length = 148 Score = 69.7 bits (169), Expect = 1e-10 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 3/108 (2%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKD---KASGDFKEMTEWHRISFFG 200654 +N ++VG L DPE +Y S AVA+ +A +KD + DF W + Sbjct: 2 INNTVLVGRLTKDPEFKYTGSNIAVASFSLAVNRNFKDANGEREADFINCVIWRQ----- 56 Query: 200655 RLAEIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQMQML 200798 AE + + KKG+ I + GRI+TR ++ Q GQ Y TE+VA+ QML Sbjct: 57 -QAENLANWAKKGALIGITGRIQTRSYENQQGQRVYVTEVVAENFQML 103 >ref|NP_040341.1|putative transposase Length = 322 Score = 69.3 bits (168), Expect = 2e-10 Identities = 89/333 (26%), Positives = 143/333 (42%), Gaps = 13/333 (3%) Frame = -1 Query: 67144 YQHLSAEERATIMILL----------QQGCSARGIARTLRRSPSTITREIRRALQWPQRT 66995 Y HLS ++ + LL +Q SA IA+ L R STI REI+R + + Sbjct: 2 YSHLSFMDKVKLEQLLLSKIFLKKNGEQNISA--IAKYLNRHRSTILREIKRFKTIDEYS 59 Query: 66994 AFVPAGSGGCTYDXXXXXXXXXXXRLKRRRHPKLAEDGVLFGVVH-HFLLEGWSPSQIAG 66818 A+ S Y+ K + K E+ + F +H F + SPS++ Sbjct: 60 AYK---SDKMYYEKRK----------KNNKRFKFTEEQLNF--IHLRFNVYHDSPSELI- 103 Query: 66817 TLKRMWPDDLDRRVSHETIYNCIYAMPRGELRKELIACLRRAQAKRMPRSRGQDRRGQLP 66638 + + V +T+Y I G L++ L R K+ R D RG+L Sbjct: 104 -YRYFLKFKVKFPVCVKTLYKWIRLGFYGFLKQNL-----RHHGKKYKRKGKSDNRGKLT 157 Query: 66637 DAVSIHLRPPEANERAFPGHWEGDLLKGAANRSAXXXXXXXXXXXXXLAKLKDATAASAL 66458 D SI N+ + G E D + G ++SA KL++ TA Sbjct: 158 DFKSIW---DIDNKVSNVGWLEMDTVVGKDHKSAILVLVEQLSKKYFAIKLENHTAREVE 214 Query: 66457 EGFTAKL--RSIAEPMRKTLTYDRGKEMARHPELSEATGIRVYFCDPRSPWQRGSCENIN 66284 + F + ++ ++ +T DR KE ++ E+ +VYFCD SP Q+ E +N Sbjct: 215 KKFKDIIIKNNLIGKIKGIIT-DRRKEFSKWREMEIFAETQVYFCDAGSPQQKPLIEYMN 273 Query: 66283 GLLRQYLPKGTDLSVYSQEELDAIADRLNSRPR 66185 LR + PKGTD + SQ+++D + + +N + R Sbjct: 274 SELRHWFPKGTDFNKVSQKQIDWVVNVINDKLR 306 Score = 69.3 bits (168), Expect = 2e-10 Identities = 89/333 (26%), Positives = 143/333 (42%), Gaps = 13/333 (3%) Frame = +2 Query: 253172 YQHLSAEERATIMILL----------QQGCSARGIARTLRRSPSTITREIRRALQWPQRT 253321 Y HLS ++ + LL +Q SA IA+ L R STI REI+R + + Sbjct: 2 YSHLSFMDKVKLEQLLLSKIFLKKNGEQNISA--IAKYLNRHRSTILREIKRFKTIDEYS 59 Query: 253322 AFVPAGSGGCTYDXXXXXXXXXXXXLKRRRHPKLAEDGVLFGVVH-HFLLEGWSPSQIAG 253498 A+ S Y+ K + K E+ + F +H F + SPS++ Sbjct: 60 AYK---SDKMYYEKRK----------KNNKRFKFTEEQLNF--IHLRFNVYHDSPSELI- 103 Query: 253499 TLKRMWPDDLDRRVSHETIYNCIYAMPRGELRKELIACLRRAQAKRMPRSRGQDRRGQLP 253678 + + V +T+Y I G L++ L R K+ R D RG+L Sbjct: 104 -YRYFLKFKVKFPVCVKTLYKWIRLGFYGFLKQNL-----RHHGKKYKRKGKSDNRGKLT 157 Query: 253679 DAVSIHLRPPEANERAFPGHWEGDLLKGAANRSAXXXXXXXXXXXXXXAKLKDATAASAL 253858 D SI N+ + G E D + G ++SA KL++ TA Sbjct: 158 DFKSIW---DIDNKVSNVGWLEMDTVVGKDHKSAILVLVEQLSKKYFAIKLENHTAREVE 214 Query: 253859 EGFTAKL--RSIAEPMRKTLTYDRGKEMARHPELSEATGIRVYFCDPRSPWQRGSCENIN 254032 + F + ++ ++ +T DR KE ++ E+ +VYFCD SP Q+ E +N Sbjct: 215 KKFKDIIIKNNLIGKIKGIIT-DRRKEFSKWREMEIFAETQVYFCDAGSPQQKPLIEYMN 273 Query: 254033 GLLRQYLPKGTDLSVYSQEELDAIADRLNSRPR 254131 LR + PKGTD + SQ+++D + + +N + R Sbjct: 274 SELRHWFPKGTDFNKVSQKQIDWVVNVINDKLR 306 >ref|NP_058484.1|ssDNA binding protein Length = 156 Score = 68.6 bits (166), Expect = 3e-10 Identities = 38/105 (36%), Positives = 64/105 (60%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKDKASGDFKEMTEWHRISFFGRLA 200663 +N+ I+VG L DPE+R SG VA+ +A + + A G+ + ++ + F + A Sbjct: 2 INRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTN-AQGERE--ADFINVIVFKKQA 58 Query: 200664 EIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQMQML 200798 E ++YL KGS V+GR++TR ++ ++GQ Y TE++AD +Q L Sbjct: 59 ENVNKYLSKGSLTGVDGRLQTRNYENKEGQRVYVTEVIADSIQFL 103 >ref|NP_835537.1|single-strand DNA-binding protein Length = 156 Score = 68.2 bits (165), Expect = 4e-10 Identities = 39/105 (37%), Positives = 64/105 (60%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKDKASGDFKEMTEWHRISFFGRLA 200663 +N+ I+VG L DPE+R SG VA+ +A + + A G+ + ++ I F + A Sbjct: 2 LNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTN-AQGERE--ADFINIIVFKKQA 58 Query: 200664 EIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQMQML 200798 E ++YL KGS V+GR++TR ++ ++GQ Y TE++AD +Q L Sbjct: 59 ENVNKYLSKGSLAGVDGRLQTRNYENKEGQRVYVTEVIADSIQFL 103 >ref|NP_150144.1|putative SSB protein Length = 181 Score = 67.4 bits (163), Expect = 6e-10 Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 3/108 (2%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKDKAS---GDFKEMTEWHRISFFG 200654 +N V++VG L D E+RY S AVA +A +K++A DF W + Sbjct: 2 INNVVLVGRLTRDAELRYTQSNIAVATFTLAVNRPFKNEAGEREADFINCVIWRQ----- 56 Query: 200655 RLAEIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQMQML 200798 LAE + + KKGS I V G I+TR + Q GQ Y TE+VA Q+L Sbjct: 57 -LAENLANWAKKGSLIGVTGVIQTRSYDNQQGQRVYVTEVVASNFQLL 103 >ref|NP_061608.1|single strand DNA binding protein Length = 142 Score = 65.1 bits (157), Expect = 3e-09 Identities = 36/105 (34%), Positives = 61/105 (58%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKDKASGDFKEMTEWHRISFFGRLA 200663 +N+ ++VG L DPE R P+G +V +A + + A G+ + ++ F + A Sbjct: 2 LNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTN-AQGERE--ADFINCVTFRKQA 58 Query: 200664 EIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQMQML 200798 E + YL KGS V+GR+++R ++ +DGQ + TE+VAD +Q L Sbjct: 59 ENVNHYLSKGSLAGVDGRLQSRSYENKDGQRVFVTEVVADSVQFL 103 >ref|NP_076649.1|SSB Length = 141 Score = 65.1 bits (157), Expect = 3e-09 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 3/108 (2%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKD---KASGDFKEMTEWHRISFFG 200654 +N V +VG + +PE+RY P AVA +A +K+ + DF W G Sbjct: 2 INNVTLVGRITKEPELRYTPQNKAVATFTLAVNRAFKNANGEREADFINCVIW------G 55 Query: 200655 RLAEIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQMQML 200798 + AE + + KG I V G I+TR ++ Q GQ Y TE++A+ Q+L Sbjct: 56 KSAENLANWTHKGQLIGVTGSIQTRNYENQQGQRVYVTEVIANNFQVL 103 >ref|NP_663648.1|putative single stranded binding protein Length = 141 Score = 64.7 bits (156), Expect = 4e-09 Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKD---KASGDFKEMTEWHRISFFG 200654 +N V +VG + +PE+RY P AVA +A +K+ + DF W G Sbjct: 2 INNVTLVGRITKEPELRYTPQNKAVATFTLAVNRAFKNANGEREADFISCVIW------G 55 Query: 200655 RLAEIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQMQML 200798 + AE + + KG I V G I+TR ++ Q GQ Y TE+VA Q+L Sbjct: 56 KSAENLANWTHKGQLIGVIGNIQTRNYENQQGQRVYITEVVASNFQVL 103 >ref|NP_112664.1|INT Length = 485 Score = 63.9 bits (154), Expect = 7e-09 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 15/154 (9%) Frame = +3 Query: 94707 YARVSTQDQ-----NLELQREALSKAG------CKKVFEDK-VSGTRADRPGLAKTLEML 94850 Y RVST +Q +++ Q + L+K + D SG + +RP + + + + Sbjct: 8 YTRVSTTNQAEEGFSIDEQIDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDI 67 Query: 94851 REG--DTLVVWKLDRLGRSVKQLVDLVGDLH-KHGVQFRSLTDSIDTGTPSGRFFFHVMA 95021 DT++V+KLDRL RSV+ + LV D+ K+ + F SL +SIDT + G F +++ Sbjct: 68 ENKAFDTVLVYKLDRLSRSVRDTLYLVKDVFTKNKIDFISLNESIDTSSAMGSLFLTILS 127 Query: 95022 SLAEMERELTVERTRAGLEVAKQLGRKGGRKPKM 95123 ++ E ERE ER G +LGR K M Sbjct: 128 AINEFERENIKERMTMG-----KLGRAKSGKSMM 156 Score = 63.2 bits (152), Expect = 1e-08 Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 3/111 (2%) Frame = -2 Query: 45135 SGTRADRPGLAKTLEMLREG--DTLVVWKLDRLGRSVKQLVDLVGDLH-KHGVQFRSLTD 44965 SG + +RP + + + + DT++V+KLDRL RSV+ + LV D+ K+ + F SL + Sbjct: 51 SGAKLERPAMQRLINDIENKAFDTVLVYKLDRLSRSVRDTLYLVKDVFTKNKIDFISLNE 110 Query: 44964 SIDTGTPSGRFFFHVMASLAEMERELTVERTRAGLEVAKQLGRKGGRKPKM 44812 SIDT + G F +++++ E ERE ER G +LGR K M Sbjct: 111 SIDTSSAMGSLFLTILSAINEFERENIKERMTMG-----KLGRAKSGKSMM 156 Score = 52.0 bits (123), Expect = 3e-05 Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 11/136 (8%) Frame = -2 Query: 84036 YMRVS---KADGSQATDLQRDALI----ANGVDPAHLYEDQA-SGKREDRPGLVSCLKAL 83881 Y RVS +A+ + D Q D L A G + Y D SG + +RP + + + Sbjct: 8 YTRVSTTNQAEEGFSIDEQIDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDI 67 Query: 83880 --RPGDTLVVWKLDRLGRDLRHLINTVHDM-TGRGIGLKVLTGHGAAIDTTTAAGKLVFG 83710 + DT++V+KLDRL R +R + V D+ T I L +IDT++A G L Sbjct: 68 ENKAFDTVLVYKLDRLSRSVRDTLYLVKDVFTKNKIDFISLN---ESIDTSSAMGSLFLT 124 Query: 83709 IFAALAEFERELIAER 83662 I +A+ EFERE I ER Sbjct: 125 ILSAINEFERENIKER 140 >ref|NP_612868.1|putative single stranded DNA binding protein Length = 138 Score = 63.2 bits (152), Expect = 1e-08 Identities = 32/101 (31%), Positives = 63/101 (62%), Gaps = 1/101 (0%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPS-GDAVANVRVATTDRYKDKASGDFKEMTEWHRISFFGRL 200660 +NKV+++G L DPE+R+ + G AVA +A +YK + +G+++ ++ + +G+ Sbjct: 1 MNKVVLIGRLTKDPELRFTATKGTAVARFTLAVNRKYKGE-NGEYE--ADFIQCIAYGKP 57 Query: 200661 AEIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVAD 200783 EI ++Y+ KG + + G IRT ++ ++G RY+T +V + Sbjct: 58 GEIIAQYMTKGRQLAIVGNIRTGSYEDKEGTKRYTTGVVVE 98 >ref|NP_061611.1|orf 21 Length = 257 Score = 60.1 bits (144), Expect = 1e-07 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 3/147 (2%) Frame = +2 Query: 36848 RNAQNLILTGPTGAGKTWLACAFGQQACRQGFSVFYVRVARLFEELKIAHGDGSF--TRR 37021 + ++LIL G G GK+ LA A + +G +V ++ + L + +K A+ + T Sbjct: 114 KEPKSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIQMLMDRIKAAYNKNAVETTDE 173 Query: 37022 LAQ-LAKIDVLILDDWGLQDLDQAARNDLLEVLDDRVGTRSTVITSQLPLEHWHAWLQDP 37198 L + L+ ID+L+LDD G+++ + N L ++D+RVG + T+ E L Sbjct: 174 LVRLLSDIDLLVLDDMGVENTEHTL-NKLFSIVDNRVGKNNIFTTNFSDKE-----LNQN 227 Query: 37199 TLADAILDRLVHQAHKLPVKGDSMRKK 37279 I R+ H A K+ V GD R++ Sbjct: 228 MNWQRINSRMKHNARKVRVIGDDFRER 254 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 58.5 bits (140), Expect = 3e-07 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 3/147 (2%) Frame = +2 Query: 36848 RNAQNLILTGPTGAGKTWLACAFGQQACRQGFSVFYVRVARLFEELKIAHGDGSF--TRR 37021 + ++LIL G G GK+ LA A + +G +V ++ + L + +K + + T Sbjct: 116 KEPKSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDE 175 Query: 37022 LAQ-LAKIDVLILDDWGLQDLDQAARNDLLEVLDDRVGTRSTVITSQLPLEHWHAWLQDP 37198 L + L+ ID+L+LDD G+++ + N L ++D+RVG + T+ E L Sbjct: 176 LVRLLSDIDLLVLDDMGVENTEHTL-NKLFSIVDNRVGKNNIFTTNFSDKE-----LNQN 229 Query: 37199 TLADAILDRLVHQAHKLPVKGDSMRKK 37279 I R+ H A K+ V GD R++ Sbjct: 230 MNWQRINSRMKHNARKVRVIGDDFRER 256 >ref|NP_803371.1|dnaC Length = 259 Score = 58.5 bits (140), Expect = 3e-07 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 3/147 (2%) Frame = +2 Query: 36848 RNAQNLILTGPTGAGKTWLACAFGQQACRQGFSVFYVRVARLFEELKIAHGDGSF--TRR 37021 + ++LIL G G GK+ LA A + +G +V ++ + L + +K + + T Sbjct: 116 KEPKSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDE 175 Query: 37022 LAQ-LAKIDVLILDDWGLQDLDQAARNDLLEVLDDRVGTRSTVITSQLPLEHWHAWLQDP 37198 L + L+ ID+L+LDD G+++ + N L ++D+RVG + T+ E L Sbjct: 176 LVRLLSDIDLLVLDDMGVENTEHTL-NKLFSIVDNRVGKNNIFTTNFSDKE-----LNQN 229 Query: 37199 TLADAILDRLVHQAHKLPVKGDSMRKK 37279 I R+ H A K+ V GD R++ Sbjct: 230 MNWQRINSRMKHNARKVRVIGDDFRER 256 >ref|NP_690729.1|SSB protein Length = 159 Score = 58.2 bits (139), Expect = 4e-07 Identities = 33/102 (32%), Positives = 55/102 (53%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKDKASGDFKEMTEWHRISFFGRLA 200663 +N V +VG L ADPE+R+ +G AV N +A KD +G ++ ++ R + +A Sbjct: 1 MNSVNLVGRLAADPELRHTNNGTAVVNFIMAVRRNRKDPTTGQYE--ADFIRCQAWRGIA 58 Query: 200664 EIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQM 200789 E+ + G I V G RT ++GQDG+ Y+ + V + + Sbjct: 59 EVIANNFGTGRMIGVSGSWRTGAFEGQDGKRVYTNDCVVENI 100 >ref|NP_046572.1|ABC transporter Length = 705 Score = 58.2 bits (139), Expect = 4e-07 Identities = 48/216 (22%), Positives = 107/216 (49%), Gaps = 2/216 (0%) Frame = -3 Query: 70307 IMTQIDLQVARGERVALVGPSGTGKTTLLRTVNGQIRAHTGQIVFDGVSMASLSATALRQ 70128 I+ I+L + R ++V ++G SGTGK+T ++++ + I +G+ + ++R+ Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 70127 LRCKIGFVAQKHDLVEPLRVHQNVMAGALGRWSNGRALRYLVWPRQDELAECQAALASVG 69948 +I ++ + L + + +N+ G + + + +++C + ++ Sbjct: 558 ---RIVYIDENPFLFKGT-IKENLCMGEI--FDQNEIENACI------MSQCHEFICNLD 605 Query: 69947 --LAHKLHEPTTALSGGEQQRVAIARALVQAPQLLLADEPVASLDPGTANDILGLLTSLA 69774 ++KL E + LS G++QR+A+ARA++ PQ+L+ DE ++++DP D L+ Sbjct: 606 KQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDP----DNTKLIYETL 661 Query: 69773 YSRGMALICSLHQPDLAARYFDRIIEVRQGTLIELS 69666 + +I H +Y +++ R +IE S Sbjct: 662 HRMDCLIILITHNDPSNFKYNKKLV-FRNNRIIESS 696 Score = 45.4 bits (106), Expect = 0.002 Identities = 49/211 (23%), Positives = 98/211 (46%), Gaps = 4/211 (1%) Frame = +3 Query: 14664 SMSNTDFLLAIE--DLTVSFDGFKAI-DSLNLYLERGELRVVIGPNGAGKTTLLDLICGK 14834 +++ DF+ I+ +L + D + I + +NL L+R + ++IG +G GK+T + Sbjct: 473 NLTELDFIQNIKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKL 532 Query: 14835 TKETAGSIKFRNEEITRLAEFRRVRQGIGRKFQTPSIYENLSVAQNLEVSFPRGRSVFGA 15014 K SI +I R + +R+ I + P +++ ++ +NL + +F Sbjct: 533 YKVPDKSIYLNGLDINRY-DHLSIRKRIVYIDENPFLFKG-TIKENLCMG-----EIFDQ 585 Query: 15015 LAYREDTEMADRVRDVAN-EIGLAATLDMEAGLLSHGQKQWLEIGMLLMQDPELLMLDEP 15191 M+ + N + + L LS GQKQ L + ++ P++L+LDE Sbjct: 586 NEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDES 645 Query: 15192 IAGMSVRERELTAELLDRICRNRSMIVIEHD 15284 ++ + +L E L R+ + +I+I H+ Sbjct: 646 LSNIDPDNTKLIYETLHRM--DCLIILITHN 674 >ref|NP_817551.1|gp102 Length = 146 Score = 57.4 bits (137), Expect = 6e-07 Identities = 31/100 (31%), Positives = 53/100 (53%) Frame = +3 Query: 200490 KVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKDKASGDFKEMTEWHRISFFGRLAEI 200669 +V +VG L ADPE+R+ G AVAN V + +R +D + R + + AE Sbjct: 6 QVHLVGTLTADPELRFTQGGQAVANFTVVSNERRRDAQGNWVDGDATFLRCTIWRDAAEN 65 Query: 200670 ASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQM 200789 +E L+KG + V G ++ R ++ ++G R E+ D++ Sbjct: 66 VAESLQKGQRVIVHGYLKQRSFETKEGDKRTVIEVEVDEI 105 >ref|NP_075481.1|ssDNA binding protein Length = 147 Score = 55.5 bits (132), Expect = 2e-06 Identities = 31/102 (30%), Positives = 58/102 (56%) Frame = +3 Query: 200484 VNKVIIVGNLGADPEVRYLPSGDAVANVRVATTDRYKDKASGDFKEMTEWHRISFFGRLA 200663 +N V ++GNL ADPE++ + + N +A +K+K + +++ T++ R FG+ A Sbjct: 1 MNTVNLIGNLVADPELK--GQNNNLVNFVIAVQRPFKNKQTNEYE--TDFIRCVAFGKTA 56 Query: 200664 EIASEYLKKGSSIYVEGRIRTRKWQGQDGQDRYSTEIVADQM 200789 EI + KG+ I V G I+T ++ GQ ++T+I + + Sbjct: 57 EIIANNFNKGNKIGVTGSIQTGSYENNQGQKVFTTDIAVNNI 98 >ref|NP_958645.1|77ORF013 Length = 259 Score = 55.5 bits (132), Expect = 2e-06 Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 3/147 (2%) Frame = +2 Query: 36848 RNAQNLILTGPTGAGKTWLACAFGQQACRQGFSVFYVRVARLFEELKIAHGDGSF--TRR 37021 + ++LIL G G GK+ LA A + +G +V ++ + L + +K + + T Sbjct: 116 KEPKSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDE 175 Query: 37022 LAQ-LAKIDVLILDDWGLQDLDQAARNDLLEVLDDRVGTRSTVITSQLPLEHWHAWLQDP 37198 L + L+ ID+L+LDD G+++ + N L ++D+RVG + T+ E L Sbjct: 176 LVRLLSDIDLLVLDDMGVENTEHTL-NKLFSIVDNRVGKNNIFTTNFSDKE-----LNQN 229 Query: 37199 TLADAILDRLVHQAHKLPVKGDSMRKK 37279 I R+ +A K+ V GD R++ Sbjct: 230 MNWQRINSRMKKRARKVRVIGDDFRER 256 >ref|NP_620626.1|putative transposase Length = 362 Score = 54.7 bits (130), Expect = 4e-06 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 8/158 (5%) Frame = -1 Query: 6289 DTYSKVAFAKLYDRKTPLPAADLLNDRVVPFFDGFGIALLRVLTDRGTEYCGN------- 6131 D +++A +YD+ + A D + + F + FGI + R+ TD G+E+ N Sbjct: 212 DEKTRLALGYVYDKLSTDNAIDAVKKAISDFKNIFGIIITRIRTDNGSEFINNYRNNQKI 271 Query: 6130 -PXXXXXXXXXXXEDIDHTQTKAKSPQTNGIVERLHKTMLNDFYRIAFCKKIYDSIATLQ 5954 ++I H T +SPQ+NG +ER H+ F F +KI +++ +LQ Sbjct: 272 SVKKTNFTQFLTDKNILHQTTPVRSPQSNGKIERFHQNYTKLF---VFEEKILNAV-SLQ 327 Query: 5953 TDLDAWLDQYDNEREHQGRWCYGKTPMRTFLASLELAK 5840 L+ + Y+ ER H+ +TP FL SL L K Sbjct: 328 NKLNDYYYFYNFERVHKS--LNFQTPF-NFLNSLSLIK 362 Score = 44.7 bits (104), Expect = 0.004 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 12/100 (12%) Frame = -3 Query: 162233 TDNGSAYIDHRTR------------RFARELGLEPLTTPVRSPQSNGMAESFVKTMKHNY 162090 TDNGS +I++ +F + + TTPVRSPQSNG E F + + Sbjct: 255 TDNGSEFINNYRNNQKISVKKTNFTQFLTDKNILHQTTPVRSPQSNGKIERFHQNYTKLF 314 Query: 162089 VAYMDKPDAPTALSRLAAAFEHYNERHPHKALKYRSPREF 161970 V +A + ++L + YN HK+L +++P F Sbjct: 315 VFEEKILNAVSLQNKLNDYYYFYNFERVHKSLNFQTPFNF 354 >ref|NP_958623.1|77ORF007 Length = 401 Score = 53.9 bits (128), Expect = 7e-06 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 30/183 (16%) Frame = -1 Query: 64423 TGLRASEVVALKVCDIDSQRMTLRVE---------QGKGRKD---------------RYA 64316 TG+R E++AL+V D+D + T+ + G G KD R A Sbjct: 226 TGMRIGELLALQVKDVDLKNKTIAINGTIHRIKCNAGFGHKDTTKTAGSRRKIAINSRIA 285 Query: 64315 -MLSPVLLE--RLRVWWRVARAQGKMLDGGWLFPGL--NPIESLSTRQLNRXXXXXXXXA 64151 +L ++LE +++ W + +D G++F NP++ ++N+ Sbjct: 286 NVLKKIMLENKKMQQW------EPSYVDRGFIFTTCQGNPMQG---SRINKRLSSAAESL 336 Query: 64150 KIDKRVSMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTT-ALYTQVATDLLREVVSPL 63974 I+K+V+ HTLRH + L E + ++ I +GH TT +YT V + RE+ L Sbjct: 337 NINKKVTTHTLRHTHISLLAEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKL 396 Query: 63973 EML 63965 E L Sbjct: 397 EKL 399 >ref|NP_040813.1|integrase Length = 289 Score = 53.9 bits (128), Expect = 7e-06 Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 1/157 (0%) Frame = -1 Query: 64480 LIAASGNLKHQTALSLAYGTGLRASEVVALKVCDIDSQRMTLRVEQGKGRKDRYAMLSPV 64301 L ++ ++ +++ + L +GLR SE + +K+ D+D + +RV K RK RYA S Sbjct: 122 LNSSKNSITYKSFIRLLLDSGLRVSEALNIKISDMDFKNKVIRVLSSKTRKQRYAPFSSF 181 Query: 64300 LLERLRVWWRVARAQGKMLDGGWLFPGLNPIESLSTRQLNRXXXXXXXXAKID-KRVSMH 64124 L+ ++ V + +LF N I+ T + + ++ +R+ H Sbjct: 182 SLKYIKELIEVNPKR------DYLF--YNFIKDRQTNKNDIKLFYKRLKKHLNLERIHTH 233 Query: 64123 TLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQ 64013 R FA+ L+E ++I +Q + H +++TT Y Q Sbjct: 234 RFRKTFASILIENGLNIDDLQKIFDHSRIETTIKYVQ 270 >ref|NP_038305.1|ORF5 Length = 260 Score = 51.6 bits (122), Expect = 3e-05 Identities = 30/105 (28%), Positives = 62/105 (59%), Gaps = 1/105 (0%) Frame = -2 Query: 3036 HNVVFIGGPGTGKTHLASAIGIEAVQRHGKRVRYF-STVELTNALEQEKSIGKQGQIAHK 2860 +N+V IG G GK+HLA + ++A+ H K++ F + V+L ++++ ++ + + + Sbjct: 120 YNIVLIGNTGVGKSHLAYS-ALKALSDHTKKMGVFINVVDLLAKIKEDFNL--EAEYIRR 176 Query: 2859 LMYVDLVILDELGYLPFSQTGGALLFHLLSKLYEHTSVVITTNLS 2725 + + ++LD+LG ++ +L+ +L+K T +ITTNLS Sbjct: 177 ISEAEWLVLDDLGTEKVTEWSSGILYSILNK---RTKTIITTNLS 218 >ref|NP_813744.2|integrase Length = 594 Score = 51.2 bits (121), Expect = 4e-05 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 8/159 (5%) Frame = +3 Query: 94644 RSDAGDAGTHRPGARQAMLI------GYARVSTQDQNLELQREALSKAGCKKVFEDKVSG 94805 RSD D T A L+ G AR + +++ R + FE + Sbjct: 29 RSDGSDVSTEAQLAAGRALVASRNAQGGARWVVAGEFVDVGRSGWDPNVTRADFERMMGE 88 Query: 94806 TRADRPGLAKTLEMLREGDTLVVWKLDRLGRS-VKQLVDLVGDLHKHGVQFRSLTDS-ID 94979 RA EGD +VV +L RL R +++ +L KHGV+F S+ + +D Sbjct: 89 VRAG------------EGDVVVVNELSRLTRKGAHDALEIDNELKKHGVRFMSVLEPFLD 136 Query: 94980 TGTPSGRFFFHVMASLAEMERELTVERTRAGLEVAKQLG 95096 T TP G F ++A+LA+ + +L ER + + LG Sbjct: 137 TSTPIGVAIFALIAALAKQDSDLKAERLKGAKDEIAALG 175 Score = 50.8 bits (120), Expect = 6e-05 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Frame = -2 Query: 45081 EGDTLVVWKLDRLGRS-VKQLVDLVGDLHKHGVQFRSLTDS-IDTGTPSGRFFFHVMASL 44908 EGD +VV +L RL R +++ +L KHGV+F S+ + +DT TP G F ++A+L Sbjct: 93 EGDVVVVNELSRLTRKGAHDALEIDNELKKHGVRFMSVLEPFLDTSTPIGVAIFALIAAL 152 Query: 44907 AEMERELTVERTRAGLEVAKQLG 44839 A+ + +L ER + + LG Sbjct: 153 AKQDSDLKAERLKGAKDEIAALG 175 >ref|NP_075302.1|gp35 Length = 500 Score = 49.3 bits (116), Expect = 2e-04 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 14/158 (8%) Frame = +3 Query: 94686 RQAMLIGYARVSTQDQNLELQREALSKAGCKK------VFED-KVSGT-----RADRPGL 94829 R ++I +RV+ + E Q E+ + ++ V ED VSG R RP L Sbjct: 2 RALVVIRLSRVTDATTSPERQLESCQQLCAQRGWDVVGVAEDLDVSGAVDPFDRKRRPNL 61 Query: 94830 AKTLEMLREG-DTLVVWKLDRLGRSVKQLVDLVGDLHKHGVQFRSLTDS-IDTGTPSGRF 95003 A+ L + D +V +++DRL RS++ L LV H S T++ DT TP Sbjct: 62 ARWLAFEEQPFDVIVAYRVDRLTRSIRHLQQLVHWAEDHKKLVVSATEAHFDTTTPFAAV 121 Query: 95004 FFHVMASLAEMERELTVERTRAGLEVAKQLGRKGGRKP 95117 +M ++A+ME E ER R+ + G+ G P Sbjct: 122 VIALMGTVAQMELEAIKERNRSAAHFNIRAGKYRGSLP 159 Score = 48.1 bits (113), Expect = 4e-04 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 2/105 (1%) Frame = -2 Query: 45126 RADRPGLAKTLEMLREG-DTLVVWKLDRLGRSVKQLVDLVGDLHKHGVQFRSLTDS-IDT 44953 R RP LA+ L + D +V +++DRL RS++ L LV H S T++ DT Sbjct: 55 RKRRPNLARWLAFEEQPFDVIVAYRVDRLTRSIRHLQQLVHWAEDHKKLVVSATEAHFDT 114 Query: 44952 GTPSGRFFFHVMASLAEMERELTVERTRAGLEVAKQLGRKGGRKP 44818 TP +M ++A+ME E ER R+ + G+ G P Sbjct: 115 TTPFAAVVIALMGTVAQMELEAIKERNRSAAHFNIRAGKYRGSLP 159 Score = 43.9 bits (102), Expect = 0.007 Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Frame = -2 Query: 84012 GSQATDLQRDALIANGVDPAHLYEDQASGKREDRPGLVSCLK-ALRPGDTLVVWKLDRLG 83836 G + D ++ VDP R+ RP L L +P D +V +++DRL Sbjct: 34 GWDVVGVAEDLDVSGAVDPFD---------RKRRPNLARWLAFEEQPFDVIVAYRVDRLT 84 Query: 83835 RDLRHLINTVHDMTGRGIGLKVLTGHGAAIDTTTAAGKLVFGIFAALAEFERELIAER 83662 R +RHL VH V++ A DTTT +V + +A+ E E I ER Sbjct: 85 RSIRHLQQLVH--WAEDHKKLVVSATEAHFDTTTPFAAVVIALMGTVAQMELEAIKER 140 >ref|NP_852561.1|DNA integration Length = 369 Score = 49.3 bits (116), Expect = 2e-04 Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 16/189 (8%) Frame = -1 Query: 64501 SREEVGRLIAASGNLKHQTALSLAYGTGLRASEVVALKVCDIDSQRMTLRVEQGKGRKDR 64322 + EEV + +A S ++ LA TG+R EV+ L+ DID ++ T+ + Q G ++ Sbjct: 172 TEEEVKKFLAHSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNK 231 Query: 64321 YAMLS---------PVLLERLRVWWR---VARAQGKMLDGGWLFPGL---NPIESLSTRQ 64187 + PV E + + + + +L L N + R Sbjct: 232 IKKTAKTNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRA 291 Query: 64186 LNRXXXXXXXXAKIDKRVSMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLD-TTALYTQV 64010 R K + H LRH AT LL+Q V+ ++I LGH + T ++Y+ V Sbjct: 292 HFRKSFIRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHV 351 Query: 64009 ATDLLREVV 63983 ++ E V Sbjct: 352 LPNMQEEAV 360 >ref|NP_061531.1|integrase Length = 369 Score = 48.9 bits (115), Expect = 2e-04 Identities = 64/257 (24%), Positives = 102/257 (39%), Gaps = 10/257 (3%) Frame = -1 Query: 64705 FLGRSPDTATVEDLRWYQLHLVDTGTSPISLNAAIAGLKFFFDVTLDRAELM----AKMX 64538 F GR + +D+R Y H +D G SP ++N +A L + E K Sbjct: 92 FAGRVVNDLGGQDIRGYGAHRLDAGASPATINRELAALSAAINHCNTELEWALPNPVKGR 151 Query: 64537 XXXXXXXXXXXLSREEVGRLIAASGNLKHQTALS----LAYGTGLRASEVVALKVCDID- 64373 L+R EV L A+ K L LA TG R E++ L+ +D Sbjct: 152 KMREAEGRDRWLTRAEVEALCRAARGQKFGPMLEDFIRLAVNTGCRREEMLGLEWRRVDF 211 Query: 64372 -SQRMTLRVEQGKGRKDRYAMLSPVLLERLRVWWRVARAQGKMLDGGWLFPGLNPIESLS 64196 ++ + L K K R ++ + L+ R+A + W+F N +S Sbjct: 212 ANRLIYLEASHTKAGKRRSIPINEGAMAALKR--RMAFRSETSPECPWVFARANGDRVIS 269 Query: 64195 TRQLNRXXXXXXXXAKIDKRVSMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYT 64016 L+ AKI ++H LRH A L+ V + ++ LLGH + T Y Sbjct: 270 ---LSAGFKQACQAAKIAD-FTIHDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTERYA 325 Query: 64015 QVATDLLREVVSPLEML 63965 +A +R+ V L+ + Sbjct: 326 HLAPARVRDAVGVLDQV 342 Score = 44.3 bits (103), Expect = 0.005 Identities = 64/241 (26%), Positives = 93/241 (38%), Gaps = 5/241 (2%) Frame = -3 Query: 57239 SARSIAHALAVLSAMFRWL-VEQRYVVANPFAGIKVRGSKRAMAVETAHAFTEGEWLLTR 57063 S +I LA LSA E + + NP G K+R A WL TR Sbjct: 118 SPATINRELAALSAAINHCNTELEWALPNPVKGRKMR-----------EAEGRDRWL-TR 165 Query: 57062 TIANGLEWSYGWQAAAAQRLRFMLD----FGYATGLRISELANATLRNVEVDAAGDHWLH 56895 L +AA Q+ ML+ TG R E+ R V+ + Sbjct: 166 AEVEAL-----CRAARGQKFGPMLEDFIRLAVNTGCRREEMLGLEWRRVDFANRLIYLEA 220 Query: 56894 VTGKGGKPARVTLTPLARAALDRYLQERGLAVSRARWNPVTPLIGSLDDGDAGIKPLRLW 56715 K GK + + A AAL R + R+ +P P + + +GD I Sbjct: 221 SHTKAGKRRSIPINEGAMAALKRRM------AFRSETSPECPWVFARANGDRVIS----- 269 Query: 56714 EVMRRFFRQAAQIIENDHPPLAEKLRQATPHWMRHTHATHAIAKGVELSAVRDNLRHASI 56535 + F+QA Q A K+ T H +RHT A ++ GV L+ VRD L H+++ Sbjct: 270 --LSAGFKQACQ---------AAKIADFTIHDLRHTCAAWLVSAGVPLADVRDLLGHSTV 318 Query: 56534 S 56532 + Sbjct: 319 A 319 >ref|NP_862860.1|gp21 Length = 256 Score = 48.5 bits (114), Expect = 3e-04 Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 1/114 (0%) Frame = -2 Query: 3036 HNVVFIGGPGTGKTHLASAIGIEAVQRHGKRVRYFSTVELTNALEQEKSIGKQGQ-IAHK 2860 +N+VF G GTGK+HLA A+ ++ + K + F + +T+ L + K+ Q + + +K Sbjct: 119 NNIVFQGEAGTGKSHLAFAM-MKYLSETTKEIAIF--INVTDLLMKIKADFSQEEFLVNK 175 Query: 2859 LMYVDLVILDELGYLPFSQTGGALLFHLLSKLYEHTSVVITTNLSFGEWATVFG 2698 + ++LD+LG S+ ++L+++L+K + VITTNL+ E +G Sbjct: 176 IASAKFLVLDDLGMEKDSEWSFSILYNILNK---RANTVITTNLTAQEIQKRYG 226 >ref|NP_075464.1|integrase Length = 401 Score = 48.5 bits (114), Expect = 3e-04 Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 24/175 (13%) Frame = -1 Query: 64423 TGLRASEVVALKVCDIDSQRMTLRV---------EQGKGRKDRYAMLSPV----LLERLR 64283 TG+R E+ AL+ DID T+ + E+G G KD +S + R Sbjct: 226 TGMRIGELQALQEKDIDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTV 285 Query: 64282 VWWRVARAQGKML--------DGGWLFPGL--NPIESLSTRQLNRXXXXXXXXAKIDKRV 64133 ++ + KML D G++F NP L Q+ ++K+V Sbjct: 286 EIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNP---LCNNQIAGVLKKTTKALNMNKKV 342 Query: 64132 SMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTT-ALYTQVATDLLREVVSPLE 63971 + HT RH T L+E V ++ I +GH TT +YT V + RE+ LE Sbjct: 343 TTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLE 397 >ref|NP_058467.1|integrase Length = 401 Score = 48.5 bits (114), Expect = 3e-04 Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 24/175 (13%) Frame = -1 Query: 64423 TGLRASEVVALKVCDIDSQRMTLRV---------EQGKGRKDRYAMLSPV----LLERLR 64283 TG+R E+ AL+ DID T+ + E+G G KD +S + R Sbjct: 226 TGMRIGELQALQEKDIDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTV 285 Query: 64282 VWWRVARAQGKML--------DGGWLFPGL--NPIESLSTRQLNRXXXXXXXXAKIDKRV 64133 ++ + KML D G++F NP L Q+ ++K+V Sbjct: 286 EIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNP---LCNNQIAGVLKKTTKALNMNKKV 342 Query: 64132 SMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTT-ALYTQVATDLLREVVSPLE 63971 + HT RH T L+E V ++ I +GH TT +YT V + RE+ LE Sbjct: 343 TTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLE 397 >ref|NP_803307.1|integrase Length = 401 Score = 48.1 bits (113), Expect = 4e-04 Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 24/175 (13%) Frame = -1 Query: 64423 TGLRASEVVALKVCDIDSQRMTLRV---------EQGKGRKDRYAMLSPV----LLERLR 64283 TG+R E+ AL+ DID T+ + E+G G KD +S + R Sbjct: 226 TGMRIGELQALQEKDIDLLNKTINITGTIHRIKYEKGFGYKDTTKTISSKRSISINSRTV 285 Query: 64282 VWWRVARAQGKML--------DGGWLFPGL--NPIESLSTRQLNRXXXXXXXXAKIDKRV 64133 ++ + KML D G++F NP L Q+ ++K+V Sbjct: 286 EIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNP---LCNNQIAGVLKKTTKALNMNKKV 342 Query: 64132 SMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTT-ALYTQVATDLLREVVSPLE 63971 + HT RH T L+E V ++ I +GH TT +YT V + RE+ LE Sbjct: 343 TTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLE 397 >ref|NP_046786.1|Int Length = 337 Score = 47.4 bits (111), Expect = 6e-04 Identities = 45/174 (25%), Positives = 75/174 (43%) Frame = -1 Query: 64501 SREEVGRLIAASGNLKHQTALSLAYGTGLRASEVVALKVCDIDSQRMTLRVEQGKGRKDR 64322 ++EE+ L+AA + A+ L TG R E LK +I R+T + K K R Sbjct: 166 TQEEIALLLAALDGDNKKIAI-LCLSTGARWGEAARLKAENIIHNRVTF--VKTKTNKPR 222 Query: 64321 YAMLSPVLLERLRVWWRVARAQGKMLDGGWLFPGLNPIESLSTRQLNRXXXXXXXXAKID 64142 +S + + + A K G+LFP + T + + + Sbjct: 223 TVPISEAVAKMI--------ADNKR---GFLFPDADYPRFRRTMKAIKPD--------LP 263 Query: 64141 KRVSMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVATDLLREVVS 63980 + H LRH FATH + I +Q +LGH +++ T +Y A + L++ +S Sbjct: 264 MGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAIS 317 Score = 41.2 bits (95), Expect = 0.046 Identities = 24/72 (33%), Positives = 37/72 (51%) Frame = +3 Query: 171462 PDRLYRAVKRFFATATEAAMREDSPHARAFSAASTHWLRHTFVSHALANGMSLESARNFA 171641 PD Y +R T A++ D P +A TH LRH+F +H + NG S+ + + Sbjct: 244 PDADYPRFRR-----TMKAIKPDLPMGQA-----THALRHSFATHFMINGGSIITLQRIL 293 Query: 171642 GHDSLDTTSIYA 171677 GH ++ T +YA Sbjct: 294 GHTRIEQTMVYA 305 >ref|NP_944257.1|putative DnaC Length = 265 Score = 46.6 bits (109), Expect = 0.001 Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 15/203 (7%) Frame = -2 Query: 3222 ERFMKQLLMAETAERQVRS--IAYQMTAARFP-AHRDLKGFDFAQAHVDEA-----LVRE 3067 E+ ++ L A E +VR I ++ A+ P A RD + F+ A DE + R Sbjct: 54 EKREQEELEARAREERVRQERIEARLNASGIPLAFRD-RTFENFVAETDEQRYALDVARS 112 Query: 3066 LSD---LSFLASAHNVVFIGGPGTGKTHLASAIGIEAVQRHGKRVRY--FSTVELTNALE 2902 ++ L + ++F G PGTGK+HLA AI + V RH + + + A Sbjct: 113 FAENFWTKHLPAGDFLIFGGNPGTGKSHLALAIQ-QYVMRHSTAMYLDAMALIRRVRATW 171 Query: 2901 QEKSIGKQGQIAHKLMY-VDLVILDELGYLPFSQTGGALLFHLLSKLY-EHTSVVITTNL 2728 + + + ++ H L + VDL+ +DE+G + A++F ++++ Y + ++ TNL Sbjct: 172 RRDAPQSEEEVLHTLGFTVDLLAIDEIGVQRGTDDEQAIVFEIINRRYRDLRPTILMTNL 231 Query: 2727 SFGEWATVFGDAKMTTALLDRVT 2659 + G F A+ L +R T Sbjct: 232 N-GAGLKDFLGARTMDRLYERGT 253 >ref|NP_695040.1|putative replication protein DnaC Length = 296 Score = 46.6 bits (109), Expect = 0.001 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 10/181 (5%) Frame = -2 Query: 3228 DPERFMKQLLMAETAERQVR-SIAYQMTAARFPAHRDLKGFDFAQAHVDE-----ALVRE 3067 + E +K+ AE +R R SI MT + F+ A DE A +E Sbjct: 89 ETEEVIKRRKKAEFVKRLNRNSIVRDMTIKK-------ASFENFNAVTDEEKRALAFAKE 141 Query: 3066 LSDLSFLASAHNVVFIGGPGTGKTHLASAIGIEAVQRHGKRVRYFSTVE----LTNALEQ 2899 +S+ + N V G GTGK+HLA +I + +Q V + S E + ++ + Sbjct: 142 VSEYYYTGGEGNTVVSGPAGTGKSHLAMSILKDCLQHTDLTVIFASWSEVLHLIKDSFDN 201 Query: 2898 EKSIGKQGQIAHKLMYVDLVILDELGYLPFSQTGGALLFHLLSKLYEHTSVVITTNLSFG 2719 + S DL+++D++G ++ +LL +L T +ITTNL Sbjct: 202 KDSFYSTEYFMEVFRNTDLLVIDDIGSEKITEWSMSLLTEVLD---ARTKTIITTNLKSD 258 Query: 2718 E 2716 E Sbjct: 259 E 259 >ref|YP_025047.1|putative integrase Length = 389 Score = 46.6 bits (109), Expect = 0.001 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 11/162 (6%) Frame = -3 Query: 56984 GYATGLRISELANATLRNVEVDAAGDH----WLHVTGKGGKPAR-------VTLTPLARA 56838 G TG+RISE+ T +++ H W H+ G G KP + + ++P Sbjct: 211 GSMTGMRISEVLALTWPDIDTKLGVIHVTRSWDHLYGTGFKPTKTDSSVRDIEISPSVIE 270 Query: 56837 ALDRYLQERGLAVSRARWNPVTPLIGSLDDGDAGIKPLRLWEVMRRFFRQAAQIIENDHP 56658 L++ QE+ + R G D+ ++ R + +A +I+N Sbjct: 271 LLNKIHQEQAASYLRT---------GYRDEDQMIMRDPRHNVITDSACNKALHVIQNKAE 321 Query: 56657 PLAEKLRQATPHWMRHTHATHAIAKGVELSAVRDNLRHASIS 56532 K Q T H +RH+H ++ I+KGV++ + L H+ ++ Sbjct: 322 IPENK--QITFHGLRHSHVSYLISKGVDIYYISKRLGHSDVT 361 Score = 46.2 bits (108), Expect = 0.001 Identities = 41/183 (22%), Positives = 79/183 (43%), Gaps = 12/183 (6%) Frame = -1 Query: 50785 GYATGLRISELADATLRSIEVDAAGDH----WLHVVGKGGKPAR-------VTLTPLART 50639 G TG+RISE+ T I+ H W H+ G G KP + + ++P Sbjct: 211 GSMTGMRISEVLALTWPDIDTKLGVIHVTRSWDHLYGTGFKPTKTDSSVRDIEISPSVIE 270 Query: 50638 ALDRYLQERGLPVSRAHWNPTTSLIGSLDDADAGIKPLRLWEVMRRFFRLVAQIIKNDHP 50459 L++ QE+ R + +I ++ R + +I+N Sbjct: 271 LLNKIHQEQAASYLRTGYRDEDQMI---------MRDPRHNVITDSACNKALHVIQNKAE 321 Query: 50458 VLAEKLHRASPHWMRHTHATHAIARGVELSAVRDNLRHASIS-TTSIYLHTDDVKRARQF 50282 + K + + H +RH+H ++ I++GV++ + L H+ ++ T +Y H D +R ++ Sbjct: 322 IPENK--QITFHGLRHSHVSYLISKGVDIYYISKRLGHSDVTITMKVYGHLLDSQRKQEA 379 Query: 50281 GQA 50273 +A Sbjct: 380 HKA 382 >ref|NP_536628.1|Int Length = 345 Score = 46.6 bits (109), Expect = 0.001 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%) Frame = -1 Query: 64126 HTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVATDLLREVV--SPLE 63971 H LRH FATH + + DI ++Q +LGH++++ T Y + D L + V +PLE Sbjct: 291 HVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQLNPLE 344 >ref|NP_536415.1|putative chromosome partitioning protein Length = 273 Score = 46.2 bits (108), Expect = 0.001 Identities = 59/219 (26%), Positives = 90/219 (41%), Gaps = 15/219 (6%) Frame = +3 Query: 212409 NPIGNHSRSGAGSLFGEPAMQQTPLQQPTIKL--GRIKLGRNPRTYFDDAKMAEMKASIS 212582 N I + SG G++ + T + P L R+ NP+T + Sbjct: 4 NSIDVYGASGKGNVLSMDPDKLTLVTDPKHPLYDRRVHQAPNPKTV----------RNYR 53 Query: 212583 ARGVDTPVIVRPLDDGFFELIAGGRRY--------KAALETRGDDYDMPVNVK----DVD 212726 A+GV PV+ + L+ GRR + +E + +P K D D Sbjct: 54 AQGVLEPVLFYKDPETGENLVIDGRRRVINARELNRQLIEAGEEPITIPAIPKRVMRDSD 113 Query: 212727 SVEAEEIAFTENIQRDDMSPGDEAVEAARLLGRCQGDREEA-ARRIGWSLPTLNSRLALL 212903 + T I+ +D SP + A + AR+L G E+A A G +PT+ S L LL Sbjct: 114 KSFVGMMVSTNEIREED-SPINRAEKMARMLD--VGHTEDAIAVAFGVEVPTVRSALKLL 170 Query: 212904 NCSNEVLIALNTRQILLGHAELLAALSKENQDRVLSVII 213020 +C V A+ QI + HA LA LS + Q + +I Sbjct: 171 DCCMAVRDAVEAEQITVSHALKLAKLSPDEQRAKVQALI 209 >ref|NP_945099.1|gp68 Length = 273 Score = 44.3 bits (103), Expect = 0.005 Identities = 59/219 (26%), Positives = 92/219 (42%), Gaps = 15/219 (6%) Frame = +3 Query: 212409 NPIGNHSRSGAGSLFGEPAMQQTPLQQPTIKL--GRIKLGRNPRTYFDDAKMAEMKASIS 212582 N I + SG G++ + T + P L R+ NP+T + Sbjct: 4 NSIDVYGASGKGNVLSMDPDKLTLVTDPKHPLYDRRVHQAPNPKTV----------RNYR 53 Query: 212583 ARGVDTPVIV-RPLDDGFFELIAGGRRYKAALETRG---DDYDMPVNV--------KDVD 212726 +GV PV+ + + G +I G RR A E D + P+ + +D D Sbjct: 54 VQGVLEPVLFYKDPETGENLVIDGRRRVINARELNRQLIDAGEEPITIPAIPKRVMRDSD 113 Query: 212727 SVEAEEIAFTENIQRDDMSPGDEAVEAARLLGRCQGDREEAARRI-GWSLPTLNSRLALL 212903 + T I+ +D SP + A + AR+L G E+A + G +PT+ S L LL Sbjct: 114 KSFVGMMVSTNEIREED-SPINRAEKMARMLD--VGHTEDAIAVVFGVEVPTVRSALKLL 170 Query: 212904 NCSNEVLIALNTRQILLGHAELLAALSKENQDRVLSVII 213020 +C V A+ QI + HA LA LS + Q + +I Sbjct: 171 DCCMAVRDAVEAEQITVSHALKLAKLSPDEQRAKVQALI 209 >ref|NP_945251.1|DnaC protein Length = 270 Score = 44.3 bits (103), Expect = 0.005 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 9/110 (8%) Frame = +2 Query: 36860 NLILTGPTGAGKTWLACAFGQQ------ACRQGFSVFYVRVARLFEELKIAHG--DGSFT 37015 N ++ G G GKT LA A ++ A SV ++ V +F++++ D T Sbjct: 124 NAVIVGQAGRGKTHLAIAIAKKLNIDFKANNNPKSVLFMNVPAMFQKIQSGFNKKDARTT 183 Query: 37016 RR-LAQLAKIDVLILDDWGLQDLDQAARNDLLEVLDDRVGTRSTVITSQL 37162 L L K+D LILDD+G D Q ++ L +LD R T++T+ L Sbjct: 184 DEWLDLLKKVDYLILDDFGKGDQSQWKQDFLYNLLDSR---DKTIVTTNL 230 >ref|NP_943914.1|hypothetical protein Length = 166 Score = 44.3 bits (103), Expect = 0.005 Identities = 39/119 (32%), Positives = 50/119 (42%), Gaps = 29/119 (24%) Frame = -3 Query: 98999 EADVIAFRTHTSAL---IEAKCSRADFFADARKPER------------------------ 98901 EAD+ R S L IE K S+ADF ADA+K R Sbjct: 34 EADLFCLRP--SGLCDEIEIKVSKADFKADAKKSVRIFEKLEKPTLYRTHKMTRKTKREA 91 Query: 98900 -SAGGLGVYRFYLCPAGLIEPDEVPDRWGLLWAE-RGKVRQIKGPEGNHWPPYDPAYRY 98730 AG + Y +Y P GLI PD+VP GL++ G + +K + H P PA Y Sbjct: 92 LEAGDMSNYFWYAVPEGLISPDDVPKWAGLIYIRPDGWAKVVKSAKRLHKQPLHPAECY 150 >ref|NP_839903.1|putative DnaC protein Length = 294 Score = 43.1 bits (100), Expect = 0.012 Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 11/124 (8%) Frame = -2 Query: 3033 NVVFIGGPGTGKTHLASAIGIEAVQRHGKRVRYFSTV---------ELTNALEQEKSIGK 2881 N VF+GG G GK+HLA AI ++ V + K + FST+ E+ N+ + + Sbjct: 146 NTVFVGGAGRGKSHLAMAI-LQEVNENLKDNK-FSTLFINISELIREIKNSWNYSDTKAE 203 Query: 2880 QGQIAHKLMYVDLVILDELGYLPFSQTGGALLFHLLSKLY--EHTSVVITTNLSFGEWAT 2707 + ++ + VDL+++D+LG + + ++ +Y + +IT+NL+ E + Sbjct: 204 EERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNTIITSNLTGKEMRS 263 Query: 2706 VFGD 2695 + D Sbjct: 264 SYDD 267 >ref|NP_958230.1|gene 56 protein Length = 100 Score = 43.1 bits (100), Expect = 0.012 Identities = 21/94 (22%), Positives = 50/94 (53%), Gaps = 3/94 (3%) Frame = -3 Query: 83075 YTKELRDEAVKLALAEGVGVSEASRRLSIPIKTLANWV---RAAKAGKLKDVGRHQRPLT 82905 ++ E + E+ +L + + V++A++ + + + T+ WV R + GK P+T Sbjct: 6 FSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKAS----PIT 61 Query: 82904 EMEAELAQVKRELAEVKMERDLLKKFATYFAKES 82803 + E+ +++++L ++ME ++LKK +S Sbjct: 62 PEQIEIRELRKKLQRIEMENEILKKATALLMSDS 95 Score = 43.1 bits (100), Expect = 0.012 Identities = 21/94 (22%), Positives = 50/94 (53%), Gaps = 3/94 (3%) Frame = -2 Query: 46365 YTKELRDEAVKLALAEGVGVSEASRRLSIPIKTLANWV---RAAKAGKLKDVGRHQRPLT 46195 ++ E + E+ +L + + V++A++ + + + T+ WV R + GK P+T Sbjct: 6 FSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKAS----PIT 61 Query: 46194 EMEAELAQVKRELAEVKMERDLLKKFATYFAKES 46093 + E+ +++++L ++ME ++LKK +S Sbjct: 62 PEQIEIRELRKKLQRIEMENEILKKATALLMSDS 95 >ref|NP_052278.1|Int Length = 336 Score = 43.1 bits (100), Expect = 0.012 Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 3/183 (1%) Frame = -1 Query: 64501 SREEVGRLIAASGNLKH---QTALSLAYGTGLRASEVVALKVCDIDSQRMTLRVEQGKGR 64331 + +++ +L+ H +T + + TG R SE +L+ + ++T KGR Sbjct: 171 THDQISQLLGECNRHDHPDLETVVRICLATGARWSEAESLRKSQLAKYKITYT--NTKGR 228 Query: 64330 KDRYAMLSPVLLERLRVWWRVARAQGKMLDGGWLFPGLNPIESLSTRQLNRXXXXXXXXA 64151 K+R +S L E L +G++ + S R Sbjct: 229 KNRTVPISKELYESLP-----DDKKGRLFSDCY-----GAFRSALERT----------GI 268 Query: 64150 KIDKRVSMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVATDLLREVVSPLE 63971 ++ H LRH FA+H + +I V+Q +LGH + T Y A D L + V Sbjct: 269 ELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDAVKLNP 328 Query: 63970 MLH 63962 ++H Sbjct: 329 LVH 331 >ref|NP_076710.1|DnaC Length = 294 Score = 43.1 bits (100), Expect = 0.012 Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 11/124 (8%) Frame = -2 Query: 3033 NVVFIGGPGTGKTHLASAIGIEAVQRHGKRVRYFSTV---------ELTNALEQEKSIGK 2881 N VF+GG G GK+HLA AI ++ V + K + FST+ E+ N+ + + Sbjct: 146 NTVFVGGAGRGKSHLAMAI-LQEVNENLKDDK-FSTLFINISELIREIKNSWNYSDTKAE 203 Query: 2880 QGQIAHKLMYVDLVILDELGYLPFSQTGGALLFHLLSKLY--EHTSVVITTNLSFGEWAT 2707 + ++ + VDL+++D+LG + + ++ +Y + +IT+NL+ E + Sbjct: 204 EERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNTIITSNLTGKEMRS 263 Query: 2706 VFGD 2695 + D Sbjct: 264 SYDD 267 >ref|NP_803254.1|integrase Length = 348 Score = 42.7 bits (99), Expect = 0.016 Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 15/189 (7%) Frame = -1 Query: 64501 SREEVGRLIAASGNLKHQTALSLAYGTGLRASEVVALKVCDIDSQRMTLRVEQG---KGR 64331 +REE + N + L + +GLR E +AL+ D D + + V + R Sbjct: 166 TREEFDEKVEQITNDTSRQLTRLLFYSGLRIGEALALQWKDYDKIKGEIDVNKKINLSNR 225 Query: 64330 KDRYAM-------LSPV---LLERLRVWWRVARAQGKMLDGGW-LFPGLNPIESLSTRQL 64184 K Y + + PV + E L+ + + + K D + +F GL PI Sbjct: 226 KIEYNLKKESSKGIIPVPNLIREMLKNMYNESSKRYKYFDENYFIFGGLEPI-------- 277 Query: 64183 NRXXXXXXXXAKIDKRVSMHTLRHCFATHLLEQKVDIRVIQVLLGHKQL-DTTALYTQVA 64007 R + + +H LRH +A++L+ VD+ ++ L+ H + +T Y+ + Sbjct: 278 -RYVTYSYHFKSVFPNLKIHHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLY 336 Query: 64006 TDLLREVVS 63980 TD + +S Sbjct: 337 TDKKHQAMS 345 >ref|NP_891578.1|gp39.2 conserved hypothetical protein Length = 57 Score = 42.7 bits (99), Expect = 0.016 Identities = 18/43 (41%), Positives = 29/43 (67%) Frame = +3 Query: 17472 MPIYDFECASCGPFSVMRRIADREKPCCCPDCGAQGDRVVSAP 17600 MP+YD+ C G F +R+I++REK CP+CG + + ++AP Sbjct: 1 MPLYDYSCEEHGQFQKIRKISEREK-AECPECGKECKQGLTAP 42 >ref|NP_958084.1|gp27 Length = 349 Score = 42.7 bits (99), Expect = 0.016 Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 3/175 (1%) Frame = -1 Query: 64495 EEVGRLIAASGNLKHQTA---LSLAYGTGLRASEVVALKVCDIDSQRMTLRVEQGKGRKD 64325 E++ +L+ A H+ + + TG R SE L + ++T + KG+K+ Sbjct: 181 EQIPQLLLACHQYGHEDLTQIVEICLATGARWSEAERLTRPQLSPYKLTFT--KTKGKKN 238 Query: 64324 RYAMLSPVLLERLRVWWRVARAQGKMLDGGWLFPGLNPIESLSTRQLNRXXXXXXXXAKI 64145 R ++ L E+L + QG+M P + L ++ Sbjct: 239 RTVPITKWLYEKL------STRQGRMF---------KPCYQEFKKML------LLTDIEL 277 Query: 64144 DKRVSMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVATDLLREVVS 63980 + H LRH F H + +I V+Q +LGH + T Y+ A D L + V+ Sbjct: 278 TEGQKTHVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYSHFAPDHLEQAVT 332 >ref|NP_543070.1|putative replication protein DnaC Length = 252 Score = 42.4 bits (98), Expect = 0.021 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 5/133 (3%) Frame = +2 Query: 36839 DWVRNAQNLILTGPTGAGKTWLACAFGQQACRQGF-SVFYVRVARLFEELKIA---HGDG 37006 D + N +L++TG G GK LA + + R SV V RL +K + Sbjct: 99 DMLENGTSLVMTGSCGTGKNHLAVSMAKHIIRNYLASVEITDVMRLTRAVKNCWRNDSEK 158 Query: 37007 SFTRRLAQLAKIDVLILDDWGLQDLDQAARNDLLEVLDDRV-GTRSTVITSQLPLEHWHA 37183 + + A +D+LI+D+ G+Q A L E+++ R T++ S L E A Sbjct: 159 TADEVIEHYASMDLLIIDEVGVQFGSAAEMAILQEIINARYESILPTILISNLSPEELWA 218 Query: 37184 WLQDPTLADAILD 37222 ++ P +AD I D Sbjct: 219 FI-SPRIADRITD 230 Score = 41.6 bits (96), Expect = 0.035 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 5/135 (3%) Frame = -2 Query: 3048 LASAHNVVFIGGPGTGKTHLASAIGIEAVQRHGKRVRYFSTVELTNALE---QEKSIGKQ 2878 L + ++V G GTGK HLA ++ ++ + V + LT A++ + S Sbjct: 101 LENGTSLVMTGSCGTGKNHLAVSMAKHIIRNYLASVEITDVMRLTRAVKNCWRNDSEKTA 160 Query: 2877 GQIAHKLMYVDLVILDELGYLPFSQTGGALLFHLLSKLYEH-TSVVITTNLSFGE-WATV 2704 ++ +DL+I+DE+G S A+L +++ YE ++ +NLS E WA + Sbjct: 161 DEVIEHYASMDLLIIDEVGVQFGSAAEMAILQEIINARYESILPTILISNLSPEELWAFI 220 Query: 2703 FGDAKMTTALLDRVT 2659 + + DR+T Sbjct: 221 ------SPRIADRIT 229 >ref|NP_795384.1|Similar to E. coli DnaC protein Length = 167 Score = 41.2 bits (95), Expect = 0.046 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 16/108 (14%) Frame = +2 Query: 36860 NLILTGPTGAGKTWLACAFGQ------QACRQGFSVFYVRVARLFEELKIAHG-DGSFT- 37015 N I+TGP+G GK+ L F + +A SV +V V LF +++ + D F+ Sbjct: 12 NAIVTGPSGVGKSHLTYGFAKWLNEQFKAYDNPKSVLFVSVVSLFNKIEESFTVDNGFSK 71 Query: 37016 -RRLAQLAKIDVLILDDWGLQDLDQA--ARND-----LLEVLDDRVGT 37135 + + L ++D L LDD G + A+N+ L E+LD+R T Sbjct: 72 AKMVDLLTRVDYLFLDDLGKESRKDGNKAKNEWRHQVLYEILDNRSNT 119 >ref|NP_891600.1|Gp44 Length = 324 Score = 40.4 bits (93), Expect = 0.078 Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 5/176 (2%) Frame = -3 Query: 128345 VPKGVLLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEMFVGVGAARVRD--LFEQAR 128172 +P +L PGTGKT +A+A+ + GV + ++G++ F+ R ++ + Sbjct: 42 IPSMILHSPSPGTGKTTVAKALCEDVGVDYLFVNGADCKIDFIRDEITRFAQSVSLDEEK 101 Query: 128171 QHAPAIVFIDELDSLGRARGSALPGGGGHDEKEQTLNQLLSELDGFDTSIGVVLLAATNR 127992 + +V IDE D G A L S + + ++ ++ A N Sbjct: 102 REKGKVVIIDEYDRAGLA---------------DAQRHLRSFSEAYSNNVTFIITA--ND 144 Query: 127991 PEILDPALLRAGRFDRQVLVDRPDKKGRCEI---LAVHLKKIRLASGVPVADIAAL 127833 E + PAL RFD + P K + + + V K I GVPV ++ L Sbjct: 145 LEGIIPAL--RSRFD-PITFGSPTKDDQLRMMKEMIVRCKAILDKEGVPVEEMRVL 197 >ref|NP_878228.1|Int Length = 326 Score = 40.4 bits (93), Expect = 0.078 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = -1 Query: 64126 HTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVATDLLREVVS 63980 H LRH FA+H + +I +Q +LGH + T Y +A D L+ V+ Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAVA 316 Score = 39.3 bits (90), Expect = 0.17 Identities = 17/39 (43%), Positives = 24/39 (61%) Frame = +3 Query: 171561 STHWLRHTFVSHALANGMSLESARNFAGHDSLDTTSIYA 171677 +TH LRHTF SH + NG ++ + + GH S+ T YA Sbjct: 266 ATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYA 304 >ref|NP_543053.1|putative integrase Length = 437 Score = 40.4 bits (93), Expect = 0.078 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 5/134 (3%) Frame = +2 Query: 106166 LSDLTRHDLLAYRQSLRKAHRDTPGDAH--RKVSEATQSRALAVVASLFRYWTETGYLTA 106339 +S +T+ +LL R+ L ++++ D R S T + + +A +F++ + GYL A Sbjct: 124 VSTVTKEELLYIRKDLLTGYQNSTKDKAPARGRSVVTVNYYMTTIAGMFQFAADHGYLEA 183 Query: 106340 NPAAGLVRGGRSRASFAPQRMLPPALLAACDASVAEASSTDDDALVIARRRAIWTLYRYA 106519 NP G+ ++RA P + + DA + + + +W+L Y Sbjct: 184 NPFEGIKPLKKARAE--PDPLTRDEFIRLIDACRHQ------------QTKNLWSLAVYT 229 Query: 106520 GVR---LVELVWFD 106552 G+R LV L W D Sbjct: 230 GMRHGELVSLAWED 243 >ref|NP_839878.1|Int Length = 326 Score = 40.4 bits (93), Expect = 0.078 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = -1 Query: 64126 HTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVATDLLREVVS 63980 H LRH FA+H + +I +Q +LGH + T Y +A D L+ V+ Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAVA 316 Score = 39.3 bits (90), Expect = 0.17 Identities = 17/39 (43%), Positives = 24/39 (61%) Frame = +3 Query: 171561 STHWLRHTFVSHALANGMSLESARNFAGHDSLDTTSIYA 171677 +TH LRHTF SH + NG ++ + + GH S+ T YA Sbjct: 266 ATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYA 304 >ref|NP_116524.1|integrase Length = 374 Score = 40.0 bits (92), Expect = 0.10 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 7/83 (8%) Frame = -1 Query: 50539 GIKPLR---LWEVMRRFFRLVAQIIKNDHPVLAEKLHRASP---HWMRHTHATHAIARGV 50378 GIKP+ + R+ L A DH + +KL+ ++P H +RHTHA+ + GV Sbjct: 274 GIKPIHDFVCYHPYRKIITLSALQNTLDHAL--KKLNISTPLTIHGLRHTHASVLLYHGV 331 Query: 50377 ELSAVRDNLRHASIS-TTSIYLH 50312 ++ V L HAS++ T Y+H Sbjct: 332 DIMTVSKRLGHASVAITQQTYIH 354 >ref|NP_108680.1|integrase Length = 374 Score = 40.0 bits (92), Expect = 0.10 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 7/83 (8%) Frame = -1 Query: 50539 GIKPLR---LWEVMRRFFRLVAQIIKNDHPVLAEKLHRASP---HWMRHTHATHAIARGV 50378 GIKP+ + R+ L A DH + +KL+ ++P H +RHTHA+ + GV Sbjct: 274 GIKPIHDFVCYHPYRKIITLSALQNTLDHAL--KKLNISTPLTVHGLRHTHASVLLYHGV 331 Query: 50377 ELSAVRDNLRHASIS-TTSIYLH 50312 ++ V L HAS++ T Y+H Sbjct: 332 DIMTVSKRLGHASVAITQQTYIH 354 >ref|YP_025040.1|putative transposase A Length = 83 Score = 40.0 bits (92), Expect = 0.10 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Frame = +2 Query: 73127 YPAQFREQMIELVRAGRKPGELAREFGCHATSILNWVR-QADASSGVVPGEAGAL----- 73288 Y +F++ +I L + G ++ARE+G +++ W++ QA SG P E A+ Sbjct: 5 YDKEFKQNIINLYKQGESAAQMAREYGIGYSTVHKWIQGQAKTQSGKSPDEIKAMEKRLA 64 Query: 73289 SASERQELIE 73318 S SE E+++ Sbjct: 65 SLSEENEILK 74 >ref|NP_076573.1|integrase Length = 374 Score = 40.0 bits (92), Expect = 0.10 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 7/83 (8%) Frame = -1 Query: 50539 GIKPLR---LWEVMRRFFRLVAQIIKNDHPVLAEKLHRASP---HWMRHTHATHAIARGV 50378 GIKP+ + R+ L A DH + +KL+ ++P H +RHTHA+ + GV Sbjct: 274 GIKPIHDFVCYHPYRKIITLSALQNTLDHAL--KKLNISTPLTVHGLRHTHASVLLYHGV 331 Query: 50377 ELSAVRDNLRHASIS-TTSIYLH 50312 ++ V L HAS++ T Y+H Sbjct: 332 DIMTVSKRLGHASVAITQQTYIH 354 >ref|NP_510917.1|similar to Escherichia coli DnaC Length = 259 Score = 39.7 bits (91), Expect = 0.13 Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 3/128 (2%) Frame = -2 Query: 3099 QAHVDEALVRELSDLSFLASAHNVVFIGGPGTGKTHLASAIGIEAVQRHGKRVRYFSTVE 2920 Q H ++ + + S +++F G GTGK+HLA AI +AV+ G V + Sbjct: 99 QVHAKQSAIEYVQGFS-TKEPKSLIFQGSYGTGKSHLAYAIA-KAVKAKGHTVAFMHIPM 156 Query: 2919 LTNALE---QEKSIGKQGQIAHKLMYVDLVILDELGYLPFSQTGGALLFHLLSKLYEHTS 2749 L + ++ + ++ ++ L +DL++LD++G T L + +++ ++ Sbjct: 157 LMDRIKATYNKNAVETTDELVKLLSEIDLLVLDDMGVENTEHTINKLFSIVDNRVGKNN- 215 Query: 2748 VVITTNLS 2725 + TTN S Sbjct: 216 -IFTTNFS 222 >ref|NP_043466.1|integrase Length = 337 Score = 39.3 bits (90), Expect = 0.17 Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 3/173 (1%) Frame = -1 Query: 64492 EVGRLIAASGNLKHQTA---LSLAYGTGLRASEVVALKVCDIDSQRMTLRVEQGKGRKDR 64322 ++ RL+A N ++ + + TG R SE L + ++T K +K+R Sbjct: 178 DIYRLLAECDNSRNPDLGLIVRICLATGARWSEAETLTQSQVMPYKITFT--NTKSKKNR 235 Query: 64321 YAMLSPVLLERLRVWWRVARAQGKMLDGGWLFPGLNPIESLSTRQLNRXXXXXXXXAKID 64142 +S L + L + +G++ + + ES L ++ Sbjct: 236 TVPISKELFDML------PKKRGRLFNDAY--------ESFENAVLRAEI-------ELP 274 Query: 64141 KRVSMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVATDLLREVV 63983 K H LRH FA+H + +I V++ +LGH ++ T Y A L V Sbjct: 275 KGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAV 327 >ref|NP_795396.1|site-specific recombinase Length = 191 Score = 38.9 bits (89), Expect = 0.23 Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 8/173 (4%) Frame = -1 Query: 64462 NLKHQTALSLAYGTGLRASEVVALKVCDIDSQRMTLRVEQGKGRKDRYAMLSPVLLE--- 64292 N ++ L TGLR +++ LKV D+ + +EQ G++ R+ + + E Sbjct: 24 NPRNFLLLLFGLNTGLRIGDILPLKVKDVTAGNYIDIIEQKTGKQKRFPINKTLRREIDK 83 Query: 64291 -----RLRVWWRVARAQGKMLDGGWLFPGLNPIESLSTRQLNRXXXXXXXXAKIDKRVSM 64127 +L+ W + +Q K + PG + +R+ + Sbjct: 84 YIKDKQLKPWDYLFESQKKCTE-----PGKEGQKKPISREQAWKILNKAAKQFGIHHIGT 138 Query: 64126 HTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVATDLLREVVSPLEM 63968 H++R F H+ ++ DI ++ + H D T Y + + + + V+ + Sbjct: 139 HSMRKSFGYHMYQKTQDIAMLMEMFNHSSPDITLRYIGINQERIDDAVADFSL 191 >ref|NP_536807.1|integrase Length = 337 Score = 38.9 bits (89), Expect = 0.23 Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 3/173 (1%) Frame = -1 Query: 64492 EVGRLIAASGNLKHQTA---LSLAYGTGLRASEVVALKVCDIDSQRMTLRVEQGKGRKDR 64322 ++ RL+A N ++ + + TG R SE L + ++T K +K+R Sbjct: 178 DIYRLLAECDNSRNPDLGLIVRICLATGARWSEAETLTQSQVMPYKITF--VNTKSKKNR 235 Query: 64321 YAMLSPVLLERLRVWWRVARAQGKMLDGGWLFPGLNPIESLSTRQLNRXXXXXXXXAKID 64142 +S L + L + +G++ + + ES L ++ Sbjct: 236 TVPISKELFDML------PKKRGRLFNDAY--------ESFENAVLRAEI-------ELP 274 Query: 64141 KRVSMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVATDLLREVV 63983 K H LRH FA+H + +I V++ +LGH ++ T Y A L V Sbjct: 275 KGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAV 327 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 38.9 bits (89), Expect = 0.23 Identities = 35/107 (32%), Positives = 41/107 (38%), Gaps = 7/107 (6%) Frame = -1 Query: 246331 RADGRSNHR*SPP----PGPRALSHQLPHARSTGQPHRGVHARNASQKNARSSSTPPEKE 246164 R D R R PP P PR +H H R +PH H A + S PE + Sbjct: 2 RFDARRLRRARPPHTRTPAPRTRAHPRAHRRVRTRPH--PHLGPARDR----SPDHPEPD 55 Query: 246163 KATRR---QPEIGLRRHPAQEGKLRPRKRVPHVHERLAEQVQPQPSG 246032 RR +P G RRHP + RPR R P V P G Sbjct: 56 HPCRRAPSRPAAGPRRHP-PVARTRPRTRAPECAPDPGPAVHPAAPG 101 Score = 38.1 bits (87), Expect = 0.39 Identities = 57/176 (32%), Positives = 67/176 (38%), Gaps = 27/176 (15%) Frame = -1 Query: 99634 RRSTRPGPRLAASTHFCMPRGRAPSLIVRPLPSRPALRRGRD-----------ASESAPS 99488 R TRP P L + P P R PSRPA R A E AP Sbjct: 32 RVRTRPHPHLGPARDRS-PDHPEPDHPCRRAPSRPAAGPRRHPPVARTRPRTRAPECAPD 90 Query: 99487 PCNGRAGHFRSLPPGFCVAADRPCER------RGRRCDLREHSRRHERPVLPDRSLPCGT 99326 P G A H PG AA E R CD H R P R++P G Sbjct: 91 P--GPAVH--PAAPGCAPAAPAAPEYAPALRPRAPECDRGAHHLRTRAPRTRTRAVPLG- 145 Query: 99325 PGRQL------DR*TERTPRPDVRCAGR---GLLIHTERLAPRLGRHLLV-ASPLP 99188 PG ++ R T R RPD R + G+ +H R A R+GR + V A P P Sbjct: 146 PGARVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGP 201 >ref|NP_695029.1|Integrase Length = 374 Score = 38.9 bits (89), Expect = 0.23 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 5/81 (6%) Frame = -1 Query: 50539 GIKPLRLWEVMRRFFRLVA-QIIKNDHPVLAEKLHRASP---HWMRHTHATHAIARGVEL 50372 GIKP+ + + +++ ++N +KL ++P H +RHTHA+ + GV++ Sbjct: 274 GIKPIHDFVCYHPYRKIITLSALQNTLEHALKKLKISTPLTVHGLRHTHASVLLYHGVDI 333 Query: 50371 SAVRDNLRHASIS-TTSIYLH 50312 V L HAS++ T Y+H Sbjct: 334 MTVSKRLGHASVAITQQTYIH 354 >ref|NP_892070.1|tail fiber protein Length = 690 Score = 38.9 bits (89), Expect = 0.23 Identities = 41/165 (24%), Positives = 64/165 (38%) Frame = +2 Query: 222131 VEARNVGALLSVLDHAAGWNDQSKRVLREQFGVSLHGLNSTRRRRAIFAFCGYDEVAQAE 222310 + AR VG + D G + LRE+ G + + Q E Sbjct: 67 INARRVGTINVYSDSLPGTLNNFLTALREEDGTP-------------------EIILQLE 107 Query: 222311 WEAKQDAARAHRRAEDSANDAKKQAGLARYRTHDNVLITGVQHVDQAIADGYSEIRSFRY 222490 + + +A RA A++S N+A +QAG+A DN + + A+ + + RY Sbjct: 108 -QLRAEAVRAALEAKESKNEATQQAGIA-ISAADNAAQETAELIKAAVKEDADRAEAARY 165 Query: 222491 GAATRYALAKPGSTEGRTLHAKNGTLDYARSRLTQLAA*SRGDYA 222625 GA T + + E H++ G L A S AA S A Sbjct: 166 GAETAQSTVNTLAAEVARHHSEVGQLASAASNSAAEAASSSNSSA 210 >ref|NP_996675.1|integrase Length = 374 Score = 38.9 bits (89), Expect = 0.23 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 5/81 (6%) Frame = -1 Query: 50539 GIKPLRLWEVMRRFFRLVA-QIIKNDHPVLAEKLHRASP---HWMRHTHATHAIARGVEL 50372 GIKP+ + + +++ ++N +KL ++P H +RHTHA+ + GV++ Sbjct: 274 GIKPIHDFVCYHPYRKIITLSALQNTLEHALKKLKISTPLTVHGLRHTHASVLLYHGVDI 333 Query: 50371 SAVRDNLRHASIS-TTSIYLH 50312 V L HAS++ T Y+H Sbjct: 334 MTVSKRLGHASVAITQQTYIH 354 >ref|NP_076801.1|integrase Length = 382 Score = 38.9 bits (89), Expect = 0.23 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = -1 Query: 64147 IDKRVSMHTLRHCFATHLLEQKVDIRVIQVLLGHKQ--LDTTALYTQVATDLLREVVSPL 63974 I+K +S H RH ++L E V ++ I +GHK TTA+YT V ++ ++ L Sbjct: 319 INKNLSSHIFRHTLISYLAENNVPLKAIVDRVGHKDGGKTTTAIYTHVTENMKSSIIDIL 378 >ref|NP_076651.1|DnaC Length = 294 Score = 38.9 bits (89), Expect = 0.23 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 11/124 (8%) Frame = -2 Query: 3033 NVVFIGGPGTGKTHLASAIGIEAVQRHGKRVRYFSTV---------ELTNALEQEKSIGK 2881 N VF+GG GK+HLA AI ++ V + K + FST+ E+ N+ + + Sbjct: 146 NTVFVGGACRGKSHLAMAI-LQEVNENLKDNK-FSTLFINISELIREIKNSWNHSDTKAE 203 Query: 2880 QGQIAHKLMYVDLVILDELGYLPFSQTGGALLFHLLSKLY--EHTSVVITTNLSFGEWAT 2707 + ++ + VDL+++D+LG + ++ +Y + +IT+NL+ E + Sbjct: 204 EERLTTLMRTVDLLVIDDLGTESTFSKDNNWVQGVIYNIYNAREGNTIITSNLTGKEMRS 263 Query: 2706 VFGD 2695 + D Sbjct: 264 SYDD 267 >ref|NP_438114.1|integrase-like protein Length = 365 Score = 38.5 bits (88), Expect = 0.30 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -1 Query: 50467 DHPVLAEKLHRASPHWMRHTHATHAIARGVELSAVRDNLRHASIS-TTSIYLH 50312 D +L L R +PH RHTHA+ G+ ++ L HA I+ T +Y H Sbjct: 294 DRFILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTH 346 >ref|NP_795660.1|putative integrase Length = 362 Score = 38.5 bits (88), Expect = 0.30 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = -1 Query: 50503 RFFRLVAQIIKNDHPVLAEKLH--RASPHWMRHTHATHAIARGVELSAVRDNLRHASIS- 50333 R F L+ ++ E+ H + +PH RHTHA+ GV ++ L HA IS Sbjct: 277 RVFNLLTSTVRRRLKRTVERHHLKKINPHGFRHTHASLLFEAGVPAKLAQERLGHAKISI 336 Query: 50332 TTSIYLH 50312 T +Y H Sbjct: 337 TMDLYTH 343 >ref|NP_795541.1|putative integrase Length = 384 Score = 38.5 bits (88), Expect = 0.30 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -1 Query: 50467 DHPVLAEKLHRASPHWMRHTHATHAIARGVELSAVRDNLRHASIS-TTSIYLH 50312 D +L L R +PH RHTHA+ G+ ++ L HA I+ T +Y H Sbjct: 313 DRFILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTH 365 >ref|NP_817502.1|gp53 Length = 293 Score = 38.5 bits (88), Expect = 0.30 Identities = 22/62 (35%), Positives = 32/62 (51%) Frame = -1 Query: 64423 TGLRASEVVALKVCDIDSQRMTLRVEQGKGRKDRYAMLSPVLLERLRVWWRVARAQGKML 64244 TG+RA+E++AL V D+ L V +GKG K R SP+ + + R R G Sbjct: 142 TGIRAAEMLALDVEDVSLVDCQLTVRRGKGAKGRRVKYSPMCAATIDKYLRARRRAGHGS 201 Query: 64243 DG 64238 +G Sbjct: 202 EG 203 >ref|NP_958556.1|putative integrase Length = 391 Score = 38.5 bits (88), Expect = 0.30 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Frame = -1 Query: 64141 KRVSMHTLRHCFATHLL-EQKVDIRVIQVLLGHKQLDTTA-LYTQVATDLLREVVSPLEM 63968 + +++H RH FAT L+ E V + +Q+LLGH+ + T +YT V + V+ L+ Sbjct: 329 RHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHVNNKNKEDAVNALKQ 388 Query: 63967 LH 63962 L+ Sbjct: 389 LN 390 >ref|NP_690728.1|hypothetical protein Length = 156 Score = 38.5 bits (88), Expect = 0.30 Identities = 35/100 (35%), Positives = 47/100 (47%) Frame = -1 Query: 200788 IWSATISVEYRSCPSWPCHLRVRILPST*IELPFFRYSLAISASRPKNEMRCHSVISLKS 200609 ++S T S Y PSWP VR P T I P + LAI+++ P+ + S Sbjct: 53 MFSTTQSFVYTLFPSWPSKAPVRHEPETPIMRPVPKL-LAITSAIPRQAWQRMKSASY-C 110 Query: 200608 PLALSL*RSVVATRTLATASPLGK*RTSGSAPRLPTIMTL 200489 P+ S + A TA PL +SGSA LPT +TL Sbjct: 111 PVVGSFLLRLTAIIKFTTAVPLFVCLSSGSAASLPTKLTL 150 >ref|YP_025058.1|DnaC Length = 260 Score = 38.5 bits (88), Expect = 0.30 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%) Frame = +2 Query: 36848 RNAQNLILTGPTGAGKTWLACAFGQQACRQGFSVFYVRVARLFEELKIAHGDGSFTRRLA 37027 + +N+IL GP GAGKT LA A +G S ++ A L + + + RL Sbjct: 99 KTPENVILFGPRGAGKTSLALAMLTSLRDEGQSGLFISTAELSNLMGLQYDAPDVRLRLV 158 Query: 37028 ----QLAKIDVLILDDWGLQ---DLD-QAARNDLLEVL 37117 + + VL+LDD+G + LD + R D+ E++ Sbjct: 159 GIERAMKEAGVLLLDDFGTEGGMKLDIKPVRRDMQELI 196 >ref|NP_958506.1|putative integrase Length = 391 Score = 38.1 bits (87), Expect = 0.39 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Frame = -1 Query: 64141 KRVSMHTLRHCFATHLL-EQKVDIRVIQVLLGHKQLDTTA-LYTQVATDLLREVVSPLEM 63968 + +++H RH FAT L+ E V + +Q+LLGH+ + T +YT + + V+ L+ Sbjct: 329 RHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHINKKNTEDAVNALKQ 388 Query: 63967 LH 63962 L+ Sbjct: 389 LN 390 >ref|NP_042036.1|DNA primase Length = 777 Score = 38.1 bits (87), Expect = 0.39 Identities = 23/65 (35%), Positives = 33/65 (50%) Frame = +1 Query: 201496 WSNIFPHYIDSQFLSGKGRWWRCPLCDGEETFRIFPPERDPNGGWHCARCLKGGMGARLI 201675 W I P + Q L K R CP+C G + FR +R+ G W+C +C G G +L+ Sbjct: 16 WPRILPA-LGIQVL--KNRHQPCPVCGGSDRFRF--DDREGRGTWYCNQC-GAGDGLKLV 69 Query: 201676 HEVTG 201690 +V G Sbjct: 70 EKVFG 74 >ref|NP_624303.1|integrase fragment Length = 112 Score = 38.1 bits (87), Expect = 0.39 Identities = 22/81 (27%), Positives = 47/81 (58%), Gaps = 10/81 (12%) Frame = -1 Query: 50524 RLWEVMRRFFR---LVAQIIKN--DHPVLAEKLH----RASPHWMRHTHATHAIARGVEL 50372 RL +V++R+ R L+ Q+ + +H + + H + H +RH+HA++ +++GV + Sbjct: 12 RLLDVLKRYKRVSGLLVQVTREAINHVLTKDLKHIEAKNVTFHALRHSHASYLLSKGVSI 71 Query: 50371 SAVRDNLRHASIS-TTSIYLH 50312 V + L H+++ T ++Y H Sbjct: 72 QYVSERLGHSNVGITENVYSH 92 >ref|NP_938213.1|A transposase Length = 690 Score = 38.1 bits (87), Expect = 0.39 Identities = 66/305 (21%), Positives = 110/305 (36%), Gaps = 27/305 (8%) Frame = +3 Query: 47988 MPLEQVQIDHTVIDLIVVDERDRQPIGRPYLTLAIDVFTRCVLGMVVTLEAPSAVSVGLC 48167 +P + D D V +P RP +T ID+ TR + G L + V V Sbjct: 256 LPTDVYSCDGHTFDAEVQHPMHGRPF-RPEITTIIDIRTRRIPGWSTGLAESALVVVDAL 314 Query: 48168 LAHAACDKRPWLEGLNVEMDWPMSGKPRLLYLDNAAEFKSEALRRGCE----QHGIRLDY 48335 AC K G P + Y+DN + + + +R + GI + Sbjct: 315 --RDACIK---------------GGVPAIFYVDNGSGYVNHMMRDEAVGLMGRLGIDMKN 357 Query: 48336 RPPGQPHYGGIVERIIGTAMQMIHDELPGTTFSNPGQRGEYDSEKMA--------TLTLR 48491 P G++ER+ + ELPG ++ ++ + + K+ T+ L Sbjct: 358 SLPYNSQARGVIERVHQSLWIRAAKELPGYIGADMDRQAKLATFKLTRRAIAKGGTMPLM 417 Query: 48492 ELERWLALA---VGTYHGSVHNGLLQ------------PPAARWAEAVERVGVPAVVTRP 48626 E ++A + Y+ H+ L + P WA P VT Sbjct: 418 SWESFVAFCEQQIAEYNDRPHSSLPRIVDPNTGRRRHMTPNEAWALHEAEGFSPMRVTDD 477 Query: 48627 TAFLVDFLPVIRRTLTRTGFVIDHIHYYADALKPWIARRERLPAFLIRRDPRDISRIWVL 48806 A + F P + RT+ R Y+A L+ + + + D D SR+WV Sbjct: 478 EARPL-FRPQVLRTVRRCELEFIGNRYFARELEEFHGDQ-----VAVGYDIHDASRVWVY 531 Query: 48807 EPEGQ 48821 + EG+ Sbjct: 532 DGEGR 536 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,272,396,701 Number of Sequences: 14420 Number of extensions: 26438907 Number of successful extensions: 93165 Number of sequences better than 0.5: 103 Number of HSP's better than 0.5 without gapping: 12415 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 92903 length of database: 3,019,461 effective HSP length: 127 effective length of database: 1,188,121 effective search space used: 104442964626 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig188 (252,920 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_006543.1|Ban 469 e-131 ref|NP_795382.1|putative DNA polymerase III delta prime subunit 350 4e-95 ref|NP_061570.1|Orf74 281 2e-74 ref|NP_958219.1|gene 44 protein 238 1e-61 ref|NP_037693.1|gene P protein 238 1e-61 ref|NP_859372.1|P protein 237 3e-61 ref|NP_859206.1|P protein 237 3e-61 ref|NP_050526.1|similar to P protein of bacteriophage HK022 237 3e-61 ref|NP_720303.1|gp12 237 4e-61 ref|NP_112058.1|replication protein P 236 5e-61 ref|NP_690733.1|DNA helicase 236 7e-61 ref|NP_852741.1|putative DNA replication protein P 228 1e-58 ref|NP_690734.1|hypothetical protein 210 5e-53 ref|NP_037740.1|Gp55 199 1e-49 ref|NP_059611.1|Hypothetical protein 197 5e-49 ref|NP_543071.1|putative helicase 194 2e-48 ref|YP_006384.1|gp12 192 9e-48 ref|NP_612864.1|putative helicase 164 3e-39 ref|NP_803269.1|helicase DnaB 162 1e-38 ref|NP_817531.1|gp82 162 2e-38 ref|NP_599056.1|bactoprenol glucosyltransferase 127 4e-28 ref|NP_059582.1|O-antigen conversion protein 127 4e-28 ref|NP_720276.1|GtrB 127 5e-28 ref|YP_006358.1|GtrB 127 5e-28 ref|NP_899539.1|PhoH domain protein 100 1e-19 ref|YP_044791.1|RepB 94 6e-18 ref|YP_006926.1|putative PhoH-like protein 93 1e-17 ref|NP_818300.1|gp250 92 2e-17 ref|NP_047257.1|putative replication protein RepB 92 3e-17 ref|NP_061653.1|transposase 89 2e-16 ref|NP_597931.1|PhoH-like protein 85 3e-15 ref|NP_076827.1|Csp 84 8e-15 ref|NP_064752.1|RPprimase 65 4e-09 ref|NP_612844.1|Gp15 protein 64 5e-09 ref|YP_195230.1|PhoH 64 6e-09 ref|NP_046572.1|ABC transporter 63 1e-08 ref|NP_803754.1|ORF188 63 1e-08 ref|NP_050160.1|hypothetical protein 62 2e-08 ref|YP_024453.1|putative PhoH-related protein 61 4e-08 ref|NP_945089.1|gp58 59 3e-07 ref|NP_818206.1|gp133 58 5e-07 ref|NP_046584.1|putative transglycosylase 57 6e-07 ref|YP_024984.1|adenylosuccinate synthetase 57 8e-07 ref|YP_052989.1|Hypothetical protein 57 8e-07 ref|NP_040341.1|putative transposase 57 8e-07 ref|NP_052088.1|helicase 53 1e-05 ref|NP_052087.1|DNA primase 53 1e-05 ref|NP_775217.1|primase 52 2e-05 ref|NP_523316.1|helicase 52 2e-05 ref|NP_523315.1|DNA primase 52 2e-05 ref|NP_848279.1|primase 49 2e-04 ref|NP_041977.1|helicase 49 2e-04 ref|NP_041975.1|DNA primase 49 2e-04 ref|NP_112710.1|ORF47 49 3e-04 ref|NP_108727.1|minor structural protein 3 49 3e-04 ref|NP_076626.1|endopeptidase 49 3e-04 ref|NP_818403.1|gp105 48 5e-04 ref|NP_663686.1|structural protein 48 5e-04 ref|NP_046573.1|putative thioredoxin 48 5e-04 ref|NP_536425.1|putative helix-turn-helix transcriptional regulator 48 5e-04 ref|NP_945111.1|gp80 48 5e-04 ref|NP_690787.1|immunity repressor 47 6e-04 ref|NP_813761.1|putative primase 47 0.001 ref|YP_024964.1|putative prophage repressor protein 47 0.001 ref|YP_164769.1|orf134 46 0.001 ref|NP_777327.1|hypothetical protein 45 0.002 ref|YP_195157.1|sliding clamp loader gp44 45 0.003 ref|NP_570328.1|RP primase 44 0.007 ref|NP_818244.1|gp193 44 0.009 ref|YP_006865.1|putative thioredoxin 44 0.009 ref|YP_164711.1|orf76 43 0.015 ref|NP_932464.1|hypothetical protein 42 0.026 ref|NP_064745.1|gp7 41 0.044 ref|YP_006616.1|Gp36 41 0.057 ref|NP_046933.1|gp38 41 0.057 ref|NP_899326.1|gp44 41 0.057 ref|NP_112716.1|LYS 40 0.075 ref|NP_853570.1|DNA primase 40 0.075 ref|YP_164705.1|orf70 40 0.098 ref|NP_108734.1|lysin 39 0.17 ref|NP_690779.1|ORF46 39 0.22 ref|NP_996722.1|lysin 39 0.22 ref|NP_046716.1|thioredoxin 39 0.28 ref|NP_817395.1|gp57 38 0.37 ref|NP_663692.1|putative lysin 38 0.37 ref|NP_958267.1|hypothetical protein 38 0.37 ref|NP_803396.1|tail length tape measure protein 38 0.49 ref|NP_058454.1|orf 16 38 0.49 ref|NP_958298.1|hypothetical protein 38 0.49 >ref|YP_006543.1|Ban Length = 454 Score = 469 bits (1206), Expect = e-131 Identities = 246/445 (55%), Positives = 324/445 (72%), Gaps = 2/445 (0%) Frame = -2 Query: 124681 LKVPPHSVEAEQSVLGGLLLDNAAWDRIADFLSQGDFYRYDHRIIYEHIGRLIAATRPAD 124502 L+ P+S+ AEQ+VLGGL+LDN WD +AD + DFY HR I+ + RL++ +P D Sbjct: 6 LESMPNSLSAEQAVLGGLMLDNCRWDEVADRIVADDFYTSAHREIFSEMERLLSHGKPID 65 Query: 124501 VVTVYEALTTSGKAEDVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSVADEIS 124322 ++T+ EAL +GK E GG AYL +++NTPS+ANI YA+IVR+RAV+R ++SVA+EI+ Sbjct: 66 LITLAEALEQNGKLERAGGFAYLAEMSKNTPSSANICAYADIVRERAVVREMISVANEIA 125 Query: 124321 ADAFNPQGKEVRQLLDEAESKVFSIAEEGARGNQGFLEIGPLLTQVVERIDTLYHTANPS 124142 + G+ +LLD AE +VF IAE+ + G +I +L V RI+ L+ P Sbjct: 126 EAGYAQDGRGSNELLDMAERRVFEIAEKRQKSGSGPKDIASILDATVSRIEELFQ--RPH 183 Query: 124141 D-VTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSM 123965 D VTG TGF DL++ T+G+ +LIIVA RPSMGKT F+MN+ E AV PV VFS+ Sbjct: 184 DGVTGLDTGFTDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLVENAAVRNDKPVLVFSL 243 Query: 123964 EMPGTQLVMRMLGSIGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQ-LFIDETGGLNPM 123788 EMP QL+MR L S+ R+DQ R+RTG+L DEDW +++ A+ + + Q +FID++ L P Sbjct: 244 EMPSHQLMMRSLASLARVDQTRIRTGQLNDEDWARVSGAMGILLDKQNIFIDDSSALTPT 303 Query: 123787 ELRSRARRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIA 123608 ELRSRARR+ ++ G L +I++DYLQLM +NR EI+EISRSLK+LAKEL VPV+A Sbjct: 304 ELRSRARRVYKENGGLSMIMIDYLQLMRVPELQDNRTLEIAEISRSLKALAKELQVPVVA 363 Query: 123607 LSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKGTAEIIIGKQ 123428 LSQLNR LEQR +KRPV SDLRESGAIEQDAD+I+F+YRDEVY+PDS KG AE+IIGKQ Sbjct: 364 LSQLNRSLEQRADKRPVNSDLRESGAIEQDADLIMFLYRDEVYHPDSEMKGIAEVIIGKQ 423 Query: 123427 RNGPIGPVRLTFLGQYTKFDNFAGA 123353 RNGPIG VRL F GQY++FDN+AGA Sbjct: 424 RNGPIGTVRLAFNGQYSRFDNYAGA 448 >ref|NP_795382.1|putative DNA polymerase III delta prime subunit Length = 446 Score = 350 bits (897), Expect = 4e-95 Identities = 183/451 (40%), Positives = 290/451 (64%), Gaps = 3/451 (0%) Frame = -2 Query: 124690 IESLKVPPHSVEAEQSVLGGLLLDNAAWDRIADFLSQGDFYRYDHRIIYEHIGRLIAATR 124511 +E K+ PH +EQ+VLG + ++ +A++L DFY+ HRI+++ + + Sbjct: 1 MEDFKMLPHDPVSEQAVLGSIFINPEKIIEVAEYLKPDDFYKPAHRILFKAMLSISGNAE 60 Query: 124510 PADVVTVYEALTTSGKAEDVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSVAD 124331 P DVVTV L + +GG+ YL + P++A+ YA+IV +A LR ++ Sbjct: 61 PIDVVTVKSVLESQDNLATIGGITYLLEVVNAVPTSAHAEHYAKIVAKKAQLRSIIDNLS 120 Query: 124330 EISADAFNPQGKEVRQLLDEAESKVFSIAEEGARGNQGFLEIGPLLTQVVERIDTLYHTA 124151 + +A++ + ++ +++ + E + +++ + + F I +L + ++I+ + Sbjct: 121 DSIGNAYD-ENMDIDEIIAKTERSLIEVSQSSNKSS--FRPIHDVLAENYQKIEE--RSN 175 Query: 124150 NPSDVTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVF 123971 N + +TG TGF D D++T+G+H +LII+A RP+MGKTAF++NI + VA + VAVF Sbjct: 176 NNTQITGIATGFYDFDKLTTGLHEDQLIILAARPAMGKTAFALNIAQNVATKSNKAVAVF 235 Query: 123970 SMEMPGTQLVMRMLGSIGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNP 123791 S+EM LV RML + G ++ H +RTG+LT E+W +L + +++EA +FID+T G+ Sbjct: 236 SLEMGAESLVERMLANEGTIESHHIRTGQLTVEEWQRLIYVQGELAEAPIFIDDTAGVKI 295 Query: 123790 MELRSRARRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVI 123611 ++R+RARRL+++ LGLI++DYLQL+ G S+ +NR E+SEISR LK LAKEL VPVI Sbjct: 296 TDIRARARRLSQETDGLGLIVIDYLQLIQG-SRSDNRQQEVSEISRQLKILAKELKVPVI 354 Query: 123610 ALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVY---NPDSPDKGTAEII 123440 ALSQL+R +EQR +KRP+MSDLRESG+IEQDAD++ F+YRD+ Y + D P+ E+I Sbjct: 355 ALSQLSRSVEQRQDKRPIMSDLRESGSIEQDADIVAFLYRDDYYTDKSDDQPESNLTELI 414 Query: 123439 IGKQRNGPIGPVRLTFLGQYTKFDNFAGAQN 123347 I K R+G +G V L F +YTKF + +N Sbjct: 415 IKKNRHGSLGTVNLYFHKEYTKFSSVREEKN 445 >ref|NP_061570.1|Orf74 Length = 446 Score = 281 bits (719), Expect = 2e-74 Identities = 162/433 (37%), Positives = 252/433 (58%), Gaps = 1/433 (0%) Frame = -2 Query: 124666 HSVEAEQSVLGGLLLDNAAWDRIADFLSQGDFYRYDHRIIYEHIGRLIAATRPADVVTVY 124487 HS+EA VLG +L +++ LS F + +Y I L +A P D++T+ Sbjct: 5 HSLEAGHGVLGAMLKQPHLISVLSEELSPDAFAYSVNADLYRLILDLESAGTPIDIITLA 64 Query: 124486 EALTTSGKAEDVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSVADEISADAFN 124307 EA ++ +AY+ + N S AN + YA IVR+RA+ R++ VA + A Sbjct: 65 EA--KEFLCDETRTMAYVGEILSNIVSVANAKEYARIVRERAISRQIADVASGVEEVAH- 121 Query: 124306 PQGKEVRQLLDEAESKVFSIAEEGARGNQGFLEIGPLLTQVVERIDTLYHTANPSDVT-G 124130 Q + + +A++ V + G G +G +L VE + + A D+ G Sbjct: 122 -QNCSIEDKIAQAQALVLGLDAGGTNGECQM--VGDILRDHVEVLQERHDRAQKGDMLDG 178 Query: 124129 TPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGT 123950 TG DLD+ T G+ G++I++AGRP+MGKT +MNI VA++ PV V S+EM + Sbjct: 179 LSTGIPDLDQYTQGLKSGQMIVIAGRPAMGKTTLAMNIAADVAIKQNRPVLVISLEMTKS 238 Query: 123949 QLVMRMLGSIGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRA 123770 QL+ R++ ++G + ++ G T ++ +L A K+ +A++ + + + +RS A Sbjct: 239 QLMDRLIAAVGGIPLQNLKDGSCTHKESTELAAATLKLRDAKIAVSDVPVMTMPRIRSIA 298 Query: 123769 RRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIALSQLNR 123590 RR + G LGLI++DYL L+ G +G+ R +++ +SR +K LA+E+ PV+ L QLNR Sbjct: 299 RRQKHRMGDLGLIVIDYLGLVEG--EGKGRVDDVTTMSRQMKLLAREIGCPVLPLCQLNR 356 Query: 123589 GLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIG 123410 G E RP+KRPV+SDLRESGAIEQDAD+++F+YRDEVY P+S KG EI+I K R+G IG Sbjct: 357 GCESRPDKRPVLSDLRESGAIEQDADIVMFVYRDEVYFPNSDKKGIGEILIRKNRDGEIG 416 Query: 123409 PVRLTFLGQYTKF 123371 V +F G ++F Sbjct: 417 SVFTSFQGSKSRF 429 >ref|NP_958219.1|gene 44 protein Length = 478 Score = 238 bits (608), Expect = 1e-61 Identities = 151/445 (33%), Positives = 238/445 (53%), Gaps = 17/445 (3%) Frame = -2 Query: 124687 ESLKVPPHSVEAEQSVLGGLLLDNAAWDRIADFLSQ---GDFYRYDHRIIYEHIGRLIAA 124517 ++ PPHS+EAEQ+V+GGLLLD+ + +R+ L+ FY H+II+E I R+ Sbjct: 3 DNFYAPPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKIIFEEITRMHRE 62 Query: 124516 TRPADVVTVYEALTTSGKAEDVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSV 124337 +P D +T+++ L VGG AY+ +A+NTPSAANI YA VR+ A+ R ++ Sbjct: 63 KKPVDGLTLFDELERKSLTASVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINR 122 Query: 124336 ADEISADAFNPQGKEVRQLLDEAESKVFSIAEEGARGNQ-GFLEIGPLLTQVVERIDTLY 124160 E + ++ G Q + +S + + G++ G G ++ V ++ + Sbjct: 123 MTEATELLYSRNGMTATQKYEAIQSIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRF 182 Query: 124159 HTANPSDVTGTPTGFVDLDRMTS--GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGL 123986 + + G TG LDRM S G+ G L ++ RP MGKT + AV Sbjct: 183 DPSG--EQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKK 240 Query: 123985 PVAVFSMEMPGTQLVMRMLGSIGRLDQHRMRTGRLTDED----------WPKLTHAVQKM 123836 P +FS+EMPG Q++ +++G ++ + D D + + ++ Sbjct: 241 PALMFSLEMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRL 300 Query: 123835 SEAQ-LFIDETGGLNPMELRSRARRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEI 123659 SE L+ID+T GL+ ++ S +RR+ R+ G +G+I+VDYL LM+ N I Sbjct: 301 SEIDMLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLA-YGMI 359 Query: 123658 SRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVY 123479 ++ LK+LAKELD V+ L+QLNR LE R NKRP+ SD R++G IEQD D + I+R+ + Sbjct: 360 TKGLKNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAF 419 Query: 123478 NPDSPDKGTAEIIIGKQRNGPIGPV 123404 + DS G E+I+ R+G G V Sbjct: 420 D-DSVPPGETELILRLNRHGNTGTV 443 >ref|NP_037693.1|gene P protein Length = 478 Score = 238 bits (608), Expect = 1e-61 Identities = 151/445 (33%), Positives = 238/445 (53%), Gaps = 17/445 (3%) Frame = -2 Query: 124687 ESLKVPPHSVEAEQSVLGGLLLDNAAWDRIADFLSQ---GDFYRYDHRIIYEHIGRLIAA 124517 ++ PPHS+EAEQ+V+GGLLLD+ + +R+ L+ FY H+II+E I R+ Sbjct: 3 DNFYAPPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKIIFEEITRMHRE 62 Query: 124516 TRPADVVTVYEALTTSGKAEDVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSV 124337 +P D +T+++ L VGG AY+ +A+NTPSAANI YA VR+ A+ R ++ Sbjct: 63 QKPVDGLTLFDELERKSLTASVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINR 122 Query: 124336 ADEISADAFNPQGKEVRQLLDEAESKVFSIAEEGARGNQ-GFLEIGPLLTQVVERIDTLY 124160 E + ++ G Q + +S + + G++ G G ++ V ++ + Sbjct: 123 MTEATELLYSRNGMTATQKYEAIQSIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRF 182 Query: 124159 HTANPSDVTGTPTGFVDLDRMTS--GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGL 123986 + + G TG LDRM S G+ G L ++ RP MGKT + AV Sbjct: 183 DPSG--EQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKK 240 Query: 123985 PVAVFSMEMPGTQLVMRMLGSIGRLDQHRMRTGRLTDED----------WPKLTHAVQKM 123836 P +FS+EMPG Q++ +++G ++ + D D + + ++ Sbjct: 241 PALMFSLEMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRL 300 Query: 123835 SEAQ-LFIDETGGLNPMELRSRARRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEI 123659 SE L+ID+T GL+ ++ S +RR+ R+ G +G+I+VDYL LM+ N I Sbjct: 301 SEIDMLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLA-YGMI 359 Query: 123658 SRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVY 123479 ++ LK+LAKELD V+ L+QLNR LE R NKRP+ SD R++G IEQD D + I+R+ + Sbjct: 360 TKGLKNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAF 419 Query: 123478 NPDSPDKGTAEIIIGKQRNGPIGPV 123404 + DS G E+I+ R+G G V Sbjct: 420 D-DSVPPGETELILRLNRHGNTGTV 443 >ref|NP_859372.1|P protein Length = 483 Score = 237 bits (605), Expect = 3e-61 Identities = 150/445 (33%), Positives = 238/445 (53%), Gaps = 17/445 (3%) Frame = -2 Query: 124687 ESLKVPPHSVEAEQSVLGGLLLDNAAWDRIADFLSQ---GDFYRYDHRIIYEHIGRLIAA 124517 ++ PPHS+EAEQ+V+GGLLLD+ + +R+ L+ FY H+II+E I R+ Sbjct: 8 DNFYAPPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKIIFEEITRMHRE 67 Query: 124516 TRPADVVTVYEALTTSGKAEDVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSV 124337 +P D +T+++ L VGG AY+ +A+NTPSAANI YA VR+ A+ R ++ Sbjct: 68 QKPVDGLTLFDELERKSLTASVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINR 127 Query: 124336 ADEISADAFNPQGKEVRQLLDEAESKVFSIAEEGARGNQ-GFLEIGPLLTQVVERIDTLY 124160 E + ++ G Q + ++ + + G++ G G ++ V ++ + Sbjct: 128 MTEATELLYSRNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRF 187 Query: 124159 HTANPSDVTGTPTGFVDLDRMTS--GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGL 123986 + + G TG LDRM S G+ G L ++ RP MGKT + AV Sbjct: 188 DPSG--EQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKK 245 Query: 123985 PVAVFSMEMPGTQLVMRMLGSIGRLDQHRMRTGRLTDED----------WPKLTHAVQKM 123836 P +FS+EMPG Q++ +++G ++ + D D + + ++ Sbjct: 246 PALMFSLEMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRL 305 Query: 123835 SEAQL-FIDETGGLNPMELRSRARRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEI 123659 SE L +ID+T GL+ ++ S +RR+ R+ G +G+I+VDYL LM+ N I Sbjct: 306 SEIDLLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLA-YGMI 364 Query: 123658 SRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVY 123479 ++ LK+LAKELD V+ L+QLNR LE R NKRP+ SD R++G IEQD D + I+R+ + Sbjct: 365 TKGLKNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAF 424 Query: 123478 NPDSPDKGTAEIIIGKQRNGPIGPV 123404 + DS G E+I+ R+G G V Sbjct: 425 D-DSVPPGETELILRLNRHGNTGTV 448 >ref|NP_859206.1|P protein Length = 483 Score = 237 bits (605), Expect = 3e-61 Identities = 150/445 (33%), Positives = 238/445 (53%), Gaps = 17/445 (3%) Frame = -2 Query: 124687 ESLKVPPHSVEAEQSVLGGLLLDNAAWDRIADFLSQ---GDFYRYDHRIIYEHIGRLIAA 124517 ++ PPHS+EAEQ+V+GGLLLD+ + +R+ L+ FY H+II+E I R+ Sbjct: 8 DNFYAPPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKIIFEEITRMHRE 67 Query: 124516 TRPADVVTVYEALTTSGKAEDVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSV 124337 +P D +T+++ L VGG AY+ +A+NTPSAANI YA VR+ A+ R ++ Sbjct: 68 QKPVDGLTLFDELERKSLTASVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINR 127 Query: 124336 ADEISADAFNPQGKEVRQLLDEAESKVFSIAEEGARGNQ-GFLEIGPLLTQVVERIDTLY 124160 E + ++ G Q + ++ + + G++ G G ++ V ++ + Sbjct: 128 MTEATELLYSRNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRF 187 Query: 124159 HTANPSDVTGTPTGFVDLDRMTS--GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGL 123986 + + G TG LDRM S G+ G L ++ RP MGKT + AV Sbjct: 188 DPSG--EQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKK 245 Query: 123985 PVAVFSMEMPGTQLVMRMLGSIGRLDQHRMRTGRLTDED----------WPKLTHAVQKM 123836 P +FS+EMPG Q++ +++G ++ + D D + + ++ Sbjct: 246 PALMFSLEMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRL 305 Query: 123835 SEAQL-FIDETGGLNPMELRSRARRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEI 123659 SE L +ID+T GL+ ++ S +RR+ R+ G +G+I+VDYL LM+ N I Sbjct: 306 SEIDLLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLA-YGMI 364 Query: 123658 SRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVY 123479 ++ LK+LAKELD V+ L+QLNR LE R NKRP+ SD R++G IEQD D + I+R+ + Sbjct: 365 TKGLKNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAF 424 Query: 123478 NPDSPDKGTAEIIIGKQRNGPIGPV 123404 + DS G E+I+ R+G G V Sbjct: 425 D-DSVPPGETELILRLNRHGNTGTV 448 >ref|NP_050526.1|similar to P protein of bacteriophage HK022 Length = 483 Score = 237 bits (605), Expect = 3e-61 Identities = 150/445 (33%), Positives = 238/445 (53%), Gaps = 17/445 (3%) Frame = -2 Query: 124687 ESLKVPPHSVEAEQSVLGGLLLDNAAWDRIADFLSQ---GDFYRYDHRIIYEHIGRLIAA 124517 ++ PPHS+EAEQ+V+GGLLLD+ + +R+ L+ FY H+II+E I R+ Sbjct: 8 DNFYAPPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKIIFEEITRMHRE 67 Query: 124516 TRPADVVTVYEALTTSGKAEDVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSV 124337 +P D +T+++ L VGG AY+ +A+NTPSAANI YA VR+ A+ R ++ Sbjct: 68 QKPVDGLTLFDELERKSLTASVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINR 127 Query: 124336 ADEISADAFNPQGKEVRQLLDEAESKVFSIAEEGARGNQ-GFLEIGPLLTQVVERIDTLY 124160 E + ++ G Q + ++ + + G++ G G ++ V ++ + Sbjct: 128 MTEATELLYSRNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRF 187 Query: 124159 HTANPSDVTGTPTGFVDLDRMTS--GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGL 123986 + + G TG LDRM S G+ G L ++ RP MGKT + AV Sbjct: 188 DPSG--EQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKK 245 Query: 123985 PVAVFSMEMPGTQLVMRMLGSIGRLDQHRMRTGRLTDED----------WPKLTHAVQKM 123836 P +FS+EMPG Q++ +++G ++ + D D + + ++ Sbjct: 246 PALMFSLEMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRL 305 Query: 123835 SEAQL-FIDETGGLNPMELRSRARRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEI 123659 SE L +ID+T GL+ ++ S +RR+ R+ G +G+I+VDYL LM+ N I Sbjct: 306 SEIDLLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLA-YGMI 364 Query: 123658 SRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVY 123479 ++ LK+LAKELD V+ L+QLNR LE R NKRP+ SD R++G IEQD D + I+R+ + Sbjct: 365 TKGLKNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAF 424 Query: 123478 NPDSPDKGTAEIIIGKQRNGPIGPV 123404 + DS G E+I+ R+G G V Sbjct: 425 D-DSVPPGETELILRLNRHGNTGTV 448 >ref|NP_720303.1|gp12 Length = 478 Score = 237 bits (604), Expect = 4e-61 Identities = 150/445 (33%), Positives = 238/445 (53%), Gaps = 17/445 (3%) Frame = -2 Query: 124687 ESLKVPPHSVEAEQSVLGGLLLDNAAWDRIADFLSQ---GDFYRYDHRIIYEHIGRLIAA 124517 ++ PPHS+EAEQ+V+GGLLLD+ + +R+ L+ FY H+I++E I R+ Sbjct: 3 DNFYAPPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKILFEEITRMHRE 62 Query: 124516 TRPADVVTVYEALTTSGKAEDVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSV 124337 +P D +T+++ L VGG AY+ +A+NTPSAANI YA VR+ A+ R ++ Sbjct: 63 QKPVDGLTLFDELERKSLTVSVGGFAYIADIAKNTPSAANIVAYAMQVRETAMERYAINR 122 Query: 124336 ADEISADAFNPQGKEVRQLLDEAESKVFSIAEEGARGNQ-GFLEIGPLLTQVVERIDTLY 124160 E + ++ G Q + ++ + + G++ G G ++ V +D + Sbjct: 123 MTEATELLYSRNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGEVMEDWVGDLDKRF 182 Query: 124159 HTANPSDVTGTPTGFVDLDRMTS--GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGL 123986 + + G TG LDRM S G+ G L ++ RP MGKT + AV Sbjct: 183 DPSG--EQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKK 240 Query: 123985 PVAVFSMEMPGTQLVMRMLGSIGRLDQHRMRTGRLTDED----------WPKLTHAVQKM 123836 P +FS+EMPG Q++ +++G ++ + D D + + ++ Sbjct: 241 PALMFSLEMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRL 300 Query: 123835 SEAQ-LFIDETGGLNPMELRSRARRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEI 123659 SE L+ID+T GL+ ++ S +RR+ R+ G +G+I+VDYL LM+ N I Sbjct: 301 SEIDMLYIDDTPGLSLAQIVSESRRIKREKGCIGMILVDYLTLMTAEKADRNDLA-YGMI 359 Query: 123658 SRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVY 123479 ++ LK+LAKELD V+ L+QLNR LE R NKRP+ SD R++G IEQD D + I+R+ + Sbjct: 360 TKGLKNLAKELDCVVVLLTQLNRALENRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAF 419 Query: 123478 NPDSPDKGTAEIIIGKQRNGPIGPV 123404 + DS G E+I+ R+G G V Sbjct: 420 D-DSVPPGETELILRLNRHGNTGTV 443 >ref|NP_112058.1|replication protein P Length = 478 Score = 236 bits (603), Expect = 5e-61 Identities = 149/445 (33%), Positives = 238/445 (53%), Gaps = 17/445 (3%) Frame = -2 Query: 124687 ESLKVPPHSVEAEQSVLGGLLLDNAAWDRIADFLSQ---GDFYRYDHRIIYEHIGRLIAA 124517 ++ PPHS+EAEQ+V+GGLLLD+ + +R+ L+ FY H+I++E I R+ Sbjct: 3 DNFYAPPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKILFEEITRMHRE 62 Query: 124516 TRPADVVTVYEALTTSGKAEDVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSV 124337 +P D +T+++ L VGG AY+ +A+NTPSAANI YA VR+ A+ R ++ Sbjct: 63 QKPVDGLTLFDELERKSLTASVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINR 122 Query: 124336 ADEISADAFNPQGKEVRQLLDEAESKVFSIAEEGARGNQ-GFLEIGPLLTQVVERIDTLY 124160 E + ++ G Q + ++ + + G++ G G ++ V ++ + Sbjct: 123 MTEATELLYSRNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRF 182 Query: 124159 HTANPSDVTGTPTGFVDLDRMTS--GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGL 123986 + + G TG LDRM S G+ G L ++ RP MGKT + AV Sbjct: 183 DPSG--EQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKK 240 Query: 123985 PVAVFSMEMPGTQLVMRMLGSIGRLDQHRMRTGRLTDED----------WPKLTHAVQKM 123836 P +FS+EMPG Q++ +++G ++ + D D + + ++ Sbjct: 241 PALMFSLEMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRL 300 Query: 123835 SEAQ-LFIDETGGLNPMELRSRARRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEI 123659 SE L+ID+T GL+ ++ S +RR+ R+ G +G+I+VDYL LM+ N I Sbjct: 301 SEIDMLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLA-YGMI 359 Query: 123658 SRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVY 123479 ++ LK+LAKELD V+ L+QLNR LE R NKRP+ SD R++G IEQD D + I+R+ + Sbjct: 360 TKGLKNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAF 419 Query: 123478 NPDSPDKGTAEIIIGKQRNGPIGPV 123404 + DS G E+I+ R+G G V Sbjct: 420 D-DSVPPGETELILRLNRHGNTGTV 443 >ref|NP_690733.1|DNA helicase Length = 442 Score = 236 bits (602), Expect = 7e-61 Identities = 147/435 (33%), Positives = 241/435 (55%), Gaps = 5/435 (1%) Frame = -2 Query: 124654 AEQSVLGGLLLDNAAWDRIADFLSQGDFYRYDHRIIYEHIGRLIAATRPADVVTVYEALT 124475 AEQ+VLG +L + L+ F H IY + L + D ++ A Sbjct: 15 AEQAVLGSILTEPELIKECP--LTPEHFSPGKHFNIYFTMQDLDRKGQSVDFTSI--AAR 70 Query: 124474 TSGKAEDVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSVADEISADAFNPQGK 124295 K +GG YL LA + S +++ + V + R+ +S+A +I + Sbjct: 71 VGEKLPQLGGFGYLTELAASVASTTTFKQHCQTVSEYFQKRKAISIAQQIIENVNESDDG 130 Query: 124294 EVRQLLDEAESKVFSIAEEGARGNQGFLEIGPLLTQVVERIDTLYHTANPSD--VTGTPT 124121 V+ + EA S++ I G + G ++ E + T+Y +D +TG P+ Sbjct: 131 PVKPI-QEAVSELMEIEASGTDDDDGSID---------EALVTVYEEIESADGNITGVPS 180 Query: 124120 GFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLV 123941 GF +LDRMT G +++A RPSMGKTAF++ + ++ + V + S+EM + + Sbjct: 181 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDV-VNLHSLEMGKKENI 239 Query: 123940 MRMLGSIGRLDQHRMRTGR--LTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRAR 123767 R++ + G ++ +++ R EDW KL+ A+ ++S + + I + G + + S+ R Sbjct: 240 KRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTR 299 Query: 123766 RLARQC-GKLGLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIALSQLNR 123590 + R+ GK ++++DYLQL+ + ++R +IS+ISR LK +A+ELDV VIALSQL+R Sbjct: 300 QTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSR 359 Query: 123589 GLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIG 123410 +EQR +KRP++SDLRESG +EQDAD+I F+YRD+ Y+ +S K E+II K R+GP+G Sbjct: 360 QVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVIIAKHRDGPVG 419 Query: 123409 PVRLTFLGQYTKFDN 123365 V L F+ +Y F N Sbjct: 420 TVSLAFIKEYGNFVN 434 >ref|NP_852741.1|putative DNA replication protein P Length = 485 Score = 228 bits (582), Expect = 1e-58 Identities = 146/445 (32%), Positives = 237/445 (53%), Gaps = 18/445 (4%) Frame = -2 Query: 124690 IESLKVPPHSVEAEQSVLGGLLLDNAAWDRIA--DFLSQGDFYRYDHRIIYEHIGRLIAA 124517 +E+LK+ P+++ AEQ VLG L+ + + D + DF+ FYR++H+ I+ I L Sbjct: 1 MENLKIVPYNLGAEQCVLGALMFGSLSKDALVVLDFVKPESFYRFEHQHIFAEIQALAKN 60 Query: 124516 TRPADVVTVYEALTTSGKAEDVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSV 124337 +P D++TV L+T G E +GG AYL LA NTPSAANIR YAEIVR+ A+ R ++ Sbjct: 61 NQPIDLMTVESRLSTKGVLEQIGGFAYLAELANNTPSAANIRAYAEIVREDAIKRFTIAK 120 Query: 124336 ADEISADAFNPQGKEVRQLLDEAESKVFSIAEEGARGNQGFLEIG-PLLTQVVERIDTLY 124160 + A + ++ + I++ G L G + T +++ Sbjct: 121 LQDCEALILAQNDLKAADRIEAISCVMSEISDYSRTGKSKGLRSGRDVGTDWLDKYQ--L 178 Query: 124159 HTANPSDVTGTPTGFVDLDRM--TSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGL 123986 P V G TG LD + G+ L+ + RP GKTAF + E + Sbjct: 179 RLEQPESVRGILTGIKALDEVIGLKGLVKQSLVALGARPKCGKTAFYSLMAENCILNEKK 238 Query: 123985 PVAVFSMEMPGTQLVMRMLGSIGRLDQHRMRTGRLTDEDW------------PKLTHAV- 123845 PV +FS+EM Q+ RML ++ + + L D+++ ++T +V Sbjct: 239 PVLLFSLEMSAEQIFERMLVKRANINANSLYDTGLNDDEFYLKYHLHKDTVMTRVTQSVG 298 Query: 123844 QKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIVDYLQLMSGSSQGENRATEIS 123665 + +++ L++D+T ++ +RS RR+ R+ G +G I +DYL LM + + E Sbjct: 299 ELVNDDLLYVDDTPNVSMSHIRSECRRIKRERGDIGFIGIDYLTLMK-AEKAERNDLAYG 357 Query: 123664 EISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDE 123485 ++++ LK+LA+E+D V+ L+QLNRGLE R +KRP+ SD R++G IEQ+ D L +Y++ Sbjct: 358 QVTKELKNLAREMDCVVLLLTQLNRGLESRSDKRPMPSDSRDTGQIEQECDYWLGLYKES 417 Query: 123484 VYNPDSPDKGTAEIIIGKQRNGPIG 123410 VYN ++ D EII+ R+G G Sbjct: 418 VYN-ENADPSLTEIIVRLNRHGGTG 441 >ref|NP_690734.1|hypothetical protein Length = 300 Score = 210 bits (534), Expect = 5e-53 Identities = 112/277 (40%), Positives = 179/277 (64%), Gaps = 5/277 (1%) Frame = -2 Query: 124180 ERIDTLYHTANPSD--VTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEY 124007 E + T+Y +D +TG P+GF +LDRMT G +++A RPSMGKTAF++ + Sbjct: 17 EALVTVYEEIESADGNITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 76 Query: 124006 VAVEYGLPVAVFSMEMPGTQLVMRMLGSIGRLDQHRMRTGR--LTDEDWPKLTHAVQKMS 123833 ++ + V + S+EM + + R++ + G ++ +++ R EDW KL+ A+ ++S Sbjct: 77 MSDNDDV-VNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEIS 135 Query: 123832 EAQLFIDETGGLNPMELRSRARRLARQC-GKLGLIIVDYLQLMSGSSQGENRATEISEIS 123656 + + I + G + + S+ R+ R+ GK ++++DYLQL+ + ++R +IS+IS Sbjct: 136 NSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQIS 195 Query: 123655 RSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYN 123476 R LK +A+ELDV VIALSQL+R +EQR +KRP++SDLRESG +EQDAD+I F+YRD+ Y+ Sbjct: 196 RDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYD 255 Query: 123475 PDSPDKGTAEIIIGKQRNGPIGPVRLTFLGQYTKFDN 123365 +S K E+II K R+GP+G V L F+ +Y F N Sbjct: 256 KESESKNIVEVIIAKHRDGPVGTVSLAFIKEYGNFVN 292 >ref|NP_037740.1|Gp55 Length = 458 Score = 199 bits (506), Expect = 1e-49 Identities = 144/435 (33%), Positives = 228/435 (52%), Gaps = 13/435 (2%) Frame = -2 Query: 124657 EAEQSVLGGLLLDN---AAWDRIADFLSQGDFYRYDHRIIYEHIGRLIAATRPADVVTVY 124487 + E SV+GGLL+ A D +A L F +R +E I + D + V Sbjct: 4 DIEASVIGGLLIGGLTPTASDVLAT-LEPEAFSIPLYRKAFEVIRKQARNRNLIDALMV- 61 Query: 124486 EALTTSGKAEDVGGLAYLNAL--AQNTPSAANIRRYAEIVRDRAVLRRLVSVADEISADA 124313 AE+ G + + L ++N PSAAN++ YA +V D R ++ + DE+ Sbjct: 62 --------AEECGEEHFTSILMTSKNCPSAANLKGYAGMVADNYHRRLVLEIMDEMREPI 113 Query: 124312 FNPQGKEVRQLLDEAESKVFSIAEEGARGNQGFLEIGPLLTQVVERIDTLYHTANPSDVT 124133 + Q +DE ++ +I + R + +G ++T + +D SD Sbjct: 114 QSGTIDASSQAMDELVKRLSAIRKP--RDEVKPVRLGEIITDYTDTLDRRLRNGEESDTL 171 Query: 124132 GTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLP-------VAV 123974 TG +LD +T GM+ +L+I+A RP MGKT ++ I E VA +P V + Sbjct: 172 --KTGIDELDAITGGMNAEDLVIIAARPGMGKTELALKIAEGVASRV-IPGSDVRRGVLI 228 Query: 123973 FSMEMPGTQLVMRMLGSIGRLDQHRMRT-GRLTDEDWPKLTHAVQKMSEAQLFIDETGGL 123797 FSMEM Q+ R + + GR+ +R + DE W ++ + + ++++ +++ + L Sbjct: 229 FSMEMSALQIAERSIANAGRMSVSVLRNPASMDDEGWARVANGMSQLADLDVWVVDASRL 288 Query: 123796 NPMELRSRARRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVP 123617 + E+RS A R ++ L LI+ DYL L+ N I+ IS SLK++AK+L P Sbjct: 289 SVEEIRSIAERHKQENPNLSLIMADYLGLIEKPKADRNDLA-IAHISGSLKAMAKDLKTP 347 Query: 123616 VIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKGTAEIII 123437 VI+LSQL+R +E+RPNKRP +DLR+SG+IEQDAD I+ +YR+ VY+ +S AEII+ Sbjct: 348 VISLSQLSRDVEKRPNKRPTNADLRDSGSIEQDADSIIMLYREAVYDENSSAAPFAEIIV 407 Query: 123436 GKQRNGPIGPVRLTF 123392 K R G +G V F Sbjct: 408 TKNRFGSLGTVYQRF 422 >ref|NP_059611.1|Hypothetical protein Length = 458 Score = 197 bits (500), Expect = 5e-49 Identities = 124/352 (35%), Positives = 196/352 (55%), Gaps = 8/352 (2%) Frame = -2 Query: 124423 AQNTPSAANIRRYAEIVRDRAVLRRLVSVADEISADAFNPQGKEVRQLLDEAESKVFSIA 124244 A++ PSAAN++ YA +V D R+++ + DE+ N + +DE ++ SI Sbjct: 77 ARSCPSAANLKGYAGMVADSYQRRQVLQLLDEMREPISNGTLDASGRAMDELVKRLSSIR 136 Query: 124243 EEGARGNQGFLEIGPLLTQVVERIDTLYHTANPSDVTGTPTGFVDLDRMTSGMHGGELII 124064 + R + +G ++ + +D SD TG +LD +T GM+ +L+I Sbjct: 137 KP--RNEVKPVRLGEIINDYTDTLDRRLRNGEESDTL--KTGIEELDAITGGMNAEDLVI 192 Query: 124063 VAGRPSMGKTAFSMNIGEYVAVEYGLP-------VAVFSMEMPGTQLVMRMLGSIGRLDQ 123905 +A RP MGKT ++ I E VA +P V +FSMEM Q+V R + G + Sbjct: 193 IAARPGMGKTELALKIAEGVASRV-IPGSGVRRGVLIFSMEMSAIQVVERGIAGAGMMSV 251 Query: 123904 HRMRT-GRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLII 123728 +R R+ DE W ++ ++ ++E +++ + L+ E+RS + R ++ L LI+ Sbjct: 252 SVLRNPSRMDDEGWARVASGMKLLAELDVWVVDASRLSVEEIRSISERHKQEHPNLSLIM 311 Query: 123727 VDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSD 123548 DYL L+ + E I+ IS SLK++AK+L PVI+LSQL+R +E+RPNKRP +D Sbjct: 312 ADYLGLIE-KPKAERNDLAIAHISGSLKAMAKDLKTPVISLSQLSRDVEKRPNKRPTNAD 370 Query: 123547 LRESGAIEQDADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGPVRLTF 123392 LR+SG+IEQDAD I+ +YR+ VY+ +S AEII+ K R G +G V F Sbjct: 371 LRDSGSIEQDADSIIMLYREAVYDENSSAAPFAEIIVTKNRFGSLGTVYQRF 422 >ref|NP_543071.1|putative helicase Length = 463 Score = 194 bits (494), Expect = 2e-48 Identities = 125/341 (36%), Positives = 194/341 (56%), Gaps = 4/341 (1%) Frame = -2 Query: 124402 ANIRRYAEIVRDRAVLR---RLVSVADEISADAFNPQGKEVRQLLDEAESKVFSIAEEGA 124232 +++ Y +R A LR ++++ A + DA + E L +A++ + S++ E Sbjct: 89 SSLEHYVAALRRNAALRDAEKILNKALQKLRDAHTCEAAE--DALKDAQNMMASLSTE-- 144 Query: 124231 RGNQGFLEIGPLLTQVVERIDTLYHTANPSDVTGTPTGFVDLDRMTSGMHGGELIIVAGR 124052 +G + I +L +VVERI+ S TG +LD T GM G+L+ +A R Sbjct: 145 KGIIQPVHIDDVLPEVVERIECRNQGLEKSRTL--MTGIDELDAKTGGMEPGDLVFIAAR 202 Query: 124051 PSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLVMRMLGSIGRLDQHRMRT-GRLTD 123875 PSMGKT +++I + V E G V +F+MEM Q+ RM+ + G + R+++ D Sbjct: 203 PSMGKTELALDIIDKVT-EQGHGVLLFTMEMANIQIGERMVSAAGGMPVSRLKSVAHFED 261 Query: 123874 EDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIVDYLQLMSGSS 123695 EDW + + V +M+ +++ + L E+ + + + + L++VDYL L+ + Sbjct: 262 EDWARFSQGVGRMTGRNIWMVDQANLTIDEICATTKHHMIKHPETALVVVDYLGLIKTRT 321 Query: 123694 QGENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDA 123515 G + + EIS+ LK LAK P+IALSQL+RG+E RPNKRP+ SDL+ SG IE DA Sbjct: 322 TGRHDLA-VGEISKGLKGLAKSGGFPLIALSQLSRGVESRPNKRPMNSDLKNSGEIEADA 380 Query: 123514 DVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGPVRLTF 123392 D+IL +YRDEVYNPD+ +G AEI I KQRNG +G + F Sbjct: 381 DIILMLYRDEVYNPDTQARGIAEINITKQRNGSLGTIYRRF 421 >ref|YP_006384.1|gp12 Length = 458 Score = 192 bits (489), Expect = 9e-48 Identities = 121/352 (34%), Positives = 196/352 (55%), Gaps = 8/352 (2%) Frame = -2 Query: 124423 AQNTPSAANIRRYAEIVRDRAVLRRLVSVADEISADAFNPQGKEVRQLLDEAESKVFSIA 124244 A++ PSAAN++ YA +V D R+++ + DE+ N + +D+ ++ +I Sbjct: 77 ARSCPSAANLKGYAGMVVDSYQRRQVLQLLDEMREPISNGTLDASGRAMDDLVKRLSAIR 136 Query: 124243 EEGARGNQGFLEIGPLLTQVVERIDTLYHTANPSDVTGTPTGFVDLDRMTSGMHGGELII 124064 + R + +G ++ + +D SD TG +LD +T GM+ +L+I Sbjct: 137 KP--RNEVKPVRLGEIINDYTDTLDRRLRNGEESDTL--KTGIEELDAITGGMNAEDLVI 192 Query: 124063 VAGRPSMGKTAFSMNIGEYVAVEYGLP-------VAVFSMEMPGTQLVMRMLGSIGRLDQ 123905 +A RP MGKT ++ I E VA +P V +FSMEM Q+V R + G + Sbjct: 193 IAARPGMGKTELALKIAEGVASRV-IPGSGVRRGVLIFSMEMSAIQVVERGIAGAGMMSV 251 Query: 123904 HRMRT-GRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLII 123728 +R R+ DE W ++ ++ +++ +++ + L+ E+RS + R ++ L LI+ Sbjct: 252 SVLRNPSRMDDEGWARVASGMKLLADLDVWVVDASRLSVEEIRSISERHKQEHPNLSLIM 311 Query: 123727 VDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSD 123548 DYL L+ + E I+ IS SLK++AK+L PVI+LSQL+R +E+RPNKRP +D Sbjct: 312 ADYLGLIE-KPKAERNDLAIAHISGSLKAMAKDLKTPVISLSQLSRDVEKRPNKRPTNAD 370 Query: 123547 LRESGAIEQDADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGPVRLTF 123392 LR+SG+IEQDAD I+ +YR+ VY+ +S AEII+ K R G +G V F Sbjct: 371 LRDSGSIEQDADSIIMLYREAVYDENSSAAPFAEIIVTKNRFGSLGTVYQRF 422 >ref|NP_612864.1|putative helicase Length = 427 Score = 164 bits (416), Expect = 3e-39 Identities = 121/430 (28%), Positives = 220/430 (51%), Gaps = 5/430 (1%) Frame = -2 Query: 124666 HSVEAEQSVLGGLLLDNAAWDRIADFLSQGDFYRYDHRIIYEHIGRLIAATRPADVVTVY 124487 +S+E+E+ +LG ++ DN + + L + DFY H+II+ I L D+ + Sbjct: 5 YSIESEKIILGTIIQDNELMLKAINILGENDFYNSKHKIIFRAIKELYKNNISFDLTILS 64 Query: 124486 EALTTSGKAEDVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSVADEISADAFN 124307 E L+ K + V L+ L ++ +T A + +V++++ R+L I Sbjct: 65 EKLSNDIKKQ-VLTLSDLTEISYHTSRGA-FDSHLSLVKEKSKERKLNETCKSILTTPGT 122 Query: 124306 PQGKEVRQLLDEAESKVFSIAEEGARGNQGFLEIGPLLTQVVERIDTLYHTANPSDVTGT 124127 + K +D ++ + + + + + ++ + E+I+ + ++ S +TG Sbjct: 123 IESK-----IDFLQNTLLEL--NSSEDKEKVYTMSEVMEKTFEKIEKAF--SSKSGITGI 173 Query: 124126 PTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQ 123947 TG +D T+G+ E I++ RPSMGKTA S+ I E + V ++M Sbjct: 174 STGIRKIDNATNGLEKKEFIVLGARPSMGKTALSLAIMENIQGN----VLYIQLDMSKEG 229 Query: 123946 LVMRMLGSIGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQ-LFIDETGGLNPMELRSRA 123770 + R+L S ++ ++ G+ D + + + ++S + +FI E + ++R A Sbjct: 230 MGQRLLASNSYIENGKIARGKFNDNEMKSIINVFDRLSRKENIFIYEPASITVNQIRLIA 289 Query: 123769 RRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIALSQLNR 123590 +++ + G L +IIVD++ + +++G + + S IS +LKS+AKEL+V ++ L QL+R Sbjct: 290 KQIKIKHG-LDVIIVDHIGKIKPTTKG-TKYEQSSYISNTLKSIAKELNVAMVGLCQLSR 347 Query: 123589 GLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVY--NPDSPD--KGTAEIIIGKQRN 123422 EQR + RP++SDLR++G+IE+DADVI +YRD Y D D EI K RN Sbjct: 348 AAEQRADHRPMLSDLRDTGSIEEDADVIGLLYRDGYYRAREDKEDIVGDVLEINFAKCRN 407 Query: 123421 GPIGPVRLTF 123392 G G V L + Sbjct: 408 GRTGVVELQY 417 >ref|NP_803269.1|helicase DnaB Length = 413 Score = 162 bits (410), Expect = 1e-38 Identities = 101/317 (31%), Positives = 174/317 (54%), Gaps = 5/317 (1%) Frame = -2 Query: 124306 PQGKEVRQLLDEAESKVFSIAEEGARGNQGFLEIGPLLTQVVERIDTLYHTANPSDVTGT 124127 P + L+DE + + +I + G + F+E E ++ LY + + Sbjct: 113 PTNQNFNNLIDELKD-LKTITNKKEDGTKKFVE---------EFVEELYSDSPKKQIK-- 160 Query: 124126 PTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQ 123947 TG+ +D G+ +LI++A RPS+GKT F++N+ +A + G + FS+E GT Sbjct: 161 -TGYKLMDYKIGGLEPSQLIVIAARPSVGKTGFALNMMLNIA-QNGYKTSFFSLETTGTS 218 Query: 123946 LVMRMLGSIGRLDQHRMRTGR-LTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRA 123770 ++ RML +I ++ +++ R LT +D KLT+A+ K+ + + I + + P ++R++A Sbjct: 219 VLKRMLSTITGIELTKIKEIRNLTPDDLTKLTNAMDKIMKLGIDISDKSNITPQDVRAQA 278 Query: 123769 RRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIALSQLNR 123590 R + +I +DYLQLM ++ + R + +ISR LK +A E ++ LSQLNR Sbjct: 279 MR---HSDRQQVIFIDYLQLMDTDAKVDRRVA-VEKISRDLKIIANETGAIIVLLSQLNR 334 Query: 123589 GLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPD----KGTAEIIIGKQRN 123422 G+E R +KRP++SD++ESG IE DA + + +YRD+ YN D D K E I K ++ Sbjct: 335 GVESRQDKRPMLSDMKESGGIEADASLAMLLYRDDYYNRDEDDSITGKSIVECNIAKNKD 394 Query: 123421 GPIGPVRLTFLGQYTKF 123371 G G + + + +F Sbjct: 395 GETGIIEFEYYKKTQRF 411 >ref|NP_817531.1|gp82 Length = 420 Score = 162 bits (409), Expect = 2e-38 Identities = 139/443 (31%), Positives = 208/443 (46%), Gaps = 10/443 (2%) Frame = -2 Query: 124672 PPHSVEAEQSVLGGLLLDNAAWDRIADFLSQGDFYRYDHRIIYEHIGRLIAATRPADVVT 124493 PP + AE +VLG +LL A + + L DFYR +H +Y+ I L A ADV+T Sbjct: 5 PPQDLAAESAVLGAMLLSKNATPAVMEILKPEDFYRPNHATVYQIITDLYMAGESADVIT 64 Query: 124492 VYEALTTSGKAEDVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSVADEISADA 124313 V L G +G L+ + QN PSA N YA IV+D+A RRL+ + D Sbjct: 65 VAAELGKQGMLNKIGAPQLLD-MQQNVPSALNATTYATIVKDKARQRRLIELGDRCRQLG 123 Query: 124312 FN--PQGKEVRQLLDEAESKVFSIAEEGARGNQGFLEIGPLLTQVVERIDTLYHTANPSD 124139 + +EV L+ +A + S E+ GF Q+VE+ T PSD Sbjct: 124 YTDATTSEEVDALIAQA-GQFLSEVEQPTGNGLGF-------AQLVEKWRTWQD--QPSD 173 Query: 124138 VTGTPTGFVDLDRMT--SGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSM 123965 V PT + +L+R G G L++V GRP GK+ +NI A E L VFS+ Sbjct: 174 V--IPTPWPELNRWIPGGGFSPGNLVVVGGRPGAGKSNAGLNIIS-KAAEDKLKSLVFSV 230 Query: 123964 EMPGTQLVMRML--GSIGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNP 123791 EM ++ R+L G+ L Q R+ + + W ++ + + L I + L Sbjct: 231 EMDDVEVFSRLLAAGTWSPLSQIIGRS--MENSTWERVEEYLDTHKDLPLEIHDDASLRV 288 Query: 123790 MELRSRARRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVI 123611 E+ SR R K +++VDY QLM S+ + T I+ ISRSLK AK+L + V+ Sbjct: 289 EEVVSRCR-----VRKPKVVMVDYAQLMENSNPKWDERTNIAHISRSLKVAAKQLHMVVV 343 Query: 123610 ALSQLNRGLEQRPNKR----PVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKGTAEI 123443 SQLNR + K P +++L ++ +DADV+L + + D + Sbjct: 344 LASQLNRENTKSTAKNGPAIPDLTNLAGGDSLGRDADVVLLLQK--------ADDNIIRM 395 Query: 123442 IIGKQRNGPIGPVRLTFLGQYTK 123374 + K RNG G + L G ++ Sbjct: 396 HVEKNRNGRTGMIELVARGAMSR 418 >ref|NP_599056.1|bactoprenol glucosyltransferase Length = 307 Score = 127 bits (320), Expect = 4e-28 Identities = 82/302 (27%), Positives = 144/302 (47%), Gaps = 1/302 (0%) Frame = +3 Query: 113523 EVSVIIPVYNEEDGLDALFARLYPALDALGTSYEVILINDGSRDRSAAMLADQFHVRPDT 113702 ++S+++PV+NEE+ + + + + E++ INDGS+D + +++ + V Sbjct: 2 KISLVVPVFNEEEAIPVFYKTVREFQELKPYEVEIVFINDGSKDATESII-NALAVSDPL 60 Query: 113703 TRVVLLNGNYGQHMAILAGFAQSRGDIVITLDADLQNPPEEIGKLITKMREGYDYVGSIR 113882 + N+G+ A+ AG + GD VI +D DLQ+P E I LI K + G D V + R Sbjct: 61 VVPLSFTRNFGKEPALFAGLDHASGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKR 120 Query: 113883 KQRQ-DSLWRRKASRVMNRLRERITRIKMTDQGCMLRAYSRRIIDTINVCGEVNTFIPAL 114059 R D +RK + +L +I+ K+ + R SR +++ I + E N F+ + Sbjct: 121 SDRSTDGRLKRKTAEWFYKLHNKISTPKIEENVGDFRLMSREVVENIKLLPERNLFMKGI 180 Query: 114060 AYTFAQNPTEIEVAHEERFAGQSKYSLYSLIRLNFDLVTGFSVVPLQWLSFIGVILSLGS 114239 +E ER AG SK++ + L L + +T FS PL+ ++IG+ ++ S Sbjct: 181 LSWVGGQTDVVEYVRAERVAGISKFNGWKLWNLALEGITSFSTFPLRVWTYIGLFVASIS 240 Query: 114240 XXXXXXXXXXXXIVGAEVQGVFTLFAITXXXXXXXXXXXXXXXEYIGRIYQQVRARPRYL 114419 + G V+G +L EYIGRIY + + RP+Y+ Sbjct: 241 FLYGAWMIIDTLVFGNPVRGYPSLLVSILFLGGVQLIGIGVLGEYIGRIYIESKHRPKYI 300 Query: 114420 VQ 114425 ++ Sbjct: 301 IK 302 >ref|NP_059582.1|O-antigen conversion protein Length = 310 Score = 127 bits (320), Expect = 4e-28 Identities = 83/302 (27%), Positives = 143/302 (47%), Gaps = 1/302 (0%) Frame = +3 Query: 113523 EVSVIIPVYNEEDGLDALFARLYPALDALGTSYEVILINDGSRDRSAAMLADQFHVRPDT 113702 ++S+++PV+NEED + + + + E++ INDGS+D + +++ ++ Sbjct: 2 KISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESII-NKIAASDPL 60 Query: 113703 TRVVLLNGNYGQHMAILAGFAQSRGDIVITLDADLQNPPEEIGKLITKMREGYDYVGSIR 113882 + N+G+ A+ AG + GD VI +D DLQ+P E I LI K + G D V + R Sbjct: 61 VIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKR 120 Query: 113883 KQRQ-DSLWRRKASRVMNRLRERITRIKMTDQGCMLRAYSRRIIDTINVCGEVNTFIPAL 114059 R D +RK + +L +I+ K+ + R SR +++ I E N F+ + Sbjct: 121 SDRSTDGRMKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFMKGV 180 Query: 114060 AYTFAQNPTEIEVAHEERFAGQSKYSLYSLIRLNFDLVTGFSVVPLQWLSFIGVILSLGS 114239 ++ A ER AG SK++ + L L + +T FS PL+ ++IG+ ++ S Sbjct: 181 LSWVGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMS 240 Query: 114240 XXXXXXXXXXXXIVGAEVQGVFTLFAITXXXXXXXXXXXXXXXEYIGRIYQQVRARPRYL 114419 I G V G +L EYIGRIY + + RP+Y+ Sbjct: 241 FLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKQRPKYI 300 Query: 114420 VQ 114425 ++ Sbjct: 301 LK 302 >ref|NP_720276.1|GtrB Length = 325 Score = 127 bits (319), Expect = 5e-28 Identities = 83/302 (27%), Positives = 143/302 (47%), Gaps = 1/302 (0%) Frame = +3 Query: 113523 EVSVIIPVYNEEDGLDALFARLYPALDALGTSYEVILINDGSRDRSAAMLADQFHVRPDT 113702 ++S+++PV+NEED + + + + E++ INDGS+D + +++ ++ Sbjct: 17 KISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESII-NKIAASDPL 75 Query: 113703 TRVVLLNGNYGQHMAILAGFAQSRGDIVITLDADLQNPPEEIGKLITKMREGYDYVGSIR 113882 + N+G+ A+ AG + GD VI +D DLQ+P E I LI K + G D V + R Sbjct: 76 VIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKR 135 Query: 113883 KQRQ-DSLWRRKASRVMNRLRERITRIKMTDQGCMLRAYSRRIIDTINVCGEVNTFIPAL 114059 R D +RK + +L +I+ K+ + R SR +++ I E N F+ + Sbjct: 136 SDRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFMKGV 195 Query: 114060 AYTFAQNPTEIEVAHEERFAGQSKYSLYSLIRLNFDLVTGFSVVPLQWLSFIGVILSLGS 114239 ++ A ER AG SK++ + L L + +T FS PL+ ++IG+ ++ S Sbjct: 196 LSWVGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMS 255 Query: 114240 XXXXXXXXXXXXIVGAEVQGVFTLFAITXXXXXXXXXXXXXXXEYIGRIYQQVRARPRYL 114419 I G V G +L EYIGRIY + + RP+Y+ Sbjct: 256 FLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKQRPKYI 315 Query: 114420 VQ 114425 ++ Sbjct: 316 LK 317 >ref|YP_006358.1|GtrB Length = 310 Score = 127 bits (319), Expect = 5e-28 Identities = 83/302 (27%), Positives = 143/302 (47%), Gaps = 1/302 (0%) Frame = +3 Query: 113523 EVSVIIPVYNEEDGLDALFARLYPALDALGTSYEVILINDGSRDRSAAMLADQFHVRPDT 113702 ++S+++PV+NEED + + + + E++ INDGS+D + +++ ++ Sbjct: 2 KISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESII-NKIAASDPL 60 Query: 113703 TRVVLLNGNYGQHMAILAGFAQSRGDIVITLDADLQNPPEEIGKLITKMREGYDYVGSIR 113882 + N+G+ A+ AG + GD VI +D DLQ+P E I LI K + G D V + R Sbjct: 61 VIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKR 120 Query: 113883 KQRQ-DSLWRRKASRVMNRLRERITRIKMTDQGCMLRAYSRRIIDTINVCGEVNTFIPAL 114059 R D +RK + +L +I+ K+ + R SR +++ I E N F+ + Sbjct: 121 SDRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFMKGV 180 Query: 114060 AYTFAQNPTEIEVAHEERFAGQSKYSLYSLIRLNFDLVTGFSVVPLQWLSFIGVILSLGS 114239 ++ A ER AG SK++ + L L + +T FS PL+ ++IG+ ++ S Sbjct: 181 LSWVGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMS 240 Query: 114240 XXXXXXXXXXXXIVGAEVQGVFTLFAITXXXXXXXXXXXXXXXEYIGRIYQQVRARPRYL 114419 I G V G +L EYIGRIY + + RP+Y+ Sbjct: 241 FLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKQRPKYI 300 Query: 114420 VQ 114425 ++ Sbjct: 301 LK 302 >ref|NP_899539.1|PhoH domain protein Length = 235 Score = 99.8 bits (247), Expect = 1e-19 Identities = 58/177 (32%), Positives = 94/177 (53%), Gaps = 4/177 (2%) Frame = +1 Query: 119566 FVTLLGQAGTGKTXXXXXXXXXXXXDDKRYNEIIVTRATVPVGEDIGFLPGTEEEKMQPW 119745 FV +G AGTGKT Y E I+ + T+ GE++G+LPGT EEKM+PW Sbjct: 41 FVFAIGSAGTGKTWLATTLGADMYSAFD-YTEFIILKPTLSCGEELGYLPGTLEEKMEPW 99 Query: 119746 MGAFDDNLEVLQKTDDAAGEWGRAATQELIRSRLKVKSMNFMRGRTFVDKYLIIDEAQNL 119925 + L+ D +W + R+ + + F+RG+TF + ++++DEAQNL Sbjct: 100 IQTVTQPLKDRLGADKFKCDWNK---------RIHAEPIQFVRGKTFDNCFIVVDEAQNL 150 Query: 119926 TPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYL----TEGSSGLTYVVDRFKGWGHSG 120084 T +++T++TR G TK+V G++ Q D + + SGL ++V+ + SG Sbjct: 151 TKTEIQTIMTRIGENTKMVFCGDLKQDDHKMIYRTGQKEISGLAWMVNEIRNQQRSG 207 >ref|YP_044791.1|RepB Length = 284 Score = 94.0 bits (232), Expect = 6e-18 Identities = 69/259 (26%), Positives = 122/259 (47%), Gaps = 8/259 (3%) Frame = -2 Query: 124123 TGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNI--GEYVAVEYGLPVAVFSMEMPGT 123950 T F +D +G+ +L +A RP +GKT+F++NI ++ + +FS+EM Sbjct: 27 TNFNIIDNYANGLKPKQLYFLAARPGVGKTSFALNIIFNALENLKEDECIVLFSLEMDSI 86 Query: 123949 QLVMRMLGSIGRLDQHRMRTG--RLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRS 123776 ++ ++L + T ++ ED K + ++ + P + Sbjct: 87 EIYSKLLALANSCSLKEVETNSKKIDFEDLNKKNLFIFDRYRNNFNNEKLSEVTPDIIYK 146 Query: 123775 RARRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIALSQL 123596 + K+ + +DY QL+ R ++S+ S+ LK L+K + LSQL Sbjct: 147 SLNSIGL---KIKAVFIDYFQLLDNQKYSSERE-KLSQCSKQLKELSKIFNCNFFVLSQL 202 Query: 123595 NRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYR-DEVYNPDS--PDKGT-AEIIIGKQ 123428 +R E++ N P SDL+ +G+IEQDAD+I+F+Y +N + P+K T + I K Sbjct: 203 SREYEKKTNNEPSFSDLKGTGSIEQDADLIMFLYNSSNNFNVGTLIPNKKTILNLSIAKN 262 Query: 123427 RNGPIGPVRLTFLGQYTKF 123371 RNG + + F+ KF Sbjct: 263 RNGELVKTNIDFIPHLAKF 281 >ref|YP_006926.1|putative PhoH-like protein Length = 250 Score = 92.8 bits (229), Expect = 1e-17 Identities = 57/189 (30%), Positives = 98/189 (51%), Gaps = 1/189 (0%) Frame = +1 Query: 119503 ITARNREQNFALNLLMNPEIDFVTLLGQAGTGKTXXXXXXXXXXXXD-DKRYNEIIVTRA 119679 + +NREQ +N++ N + +G+ GTGKT D ++I+ R Sbjct: 42 LVGKNREQKSYINMIKNNTV--TVGIGEPGTGKTFIPSVLAAQELVDIHSDIEQVILVRP 99 Query: 119680 TVPVGEDIGFLPGTEEEKMQPWMGAFDDNLEVLQKTDDAAGEWGRAATQELIRSRLKVKS 119859 P+G+ +G LPG EK++PW+ D ++ A G+ E R ++K + Sbjct: 100 NEPLGKSLGMLPGDLAEKLEPWLEPIADGMKW------AIGDHAYKGYVE--RQKIKFLA 151 Query: 119860 MNFMRGRTFVDKYLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTEGSSG 120039 + RGRTF + Y+I+DEAQN++ + M L+TR G +++ G+IAQ D +G SG Sbjct: 152 IEHARGRTFNNSYVIVDEAQNISVEAMVCLLTRVGQDCRLIICGDIAQKD----IKGDSG 207 Query: 120040 LTYVVDRFK 120066 L +++ ++ Sbjct: 208 LALLMEVYE 216 >ref|NP_818300.1|gp250 Length = 442 Score = 92.4 bits (228), Expect = 2e-17 Identities = 95/361 (26%), Positives = 153/361 (42%), Gaps = 30/361 (8%) Frame = -3 Query: 50622 WGDEGKGKIVDWLT--DHAQGVVRFQGGHNAGHTLII-GGKKTILRLIPSGIMREGVACF 50452 +GD GKG VDWL D + VVR GG AGH +++ G S + G F Sbjct: 14 YGDAGKGTTVDWLCGGDPSTLVVRHNGGSQAGHNVVLDDGTHHEFSQFGSAFL-HGAVTF 72 Query: 50451 IGNGVVLSPEALFKEIGELEEAG----VNVRDRLFISEATTLILPYHIAIDQAREARKGA 50284 + V+++P + +E L+E + +F+ ++ PYH+A+ + + +G Sbjct: 73 LSRYVMVNPLDMIEEAKHLDEVSQLETTDALSMMFVDAQAKVVTPYHVALQRLKAYARG- 131 Query: 50283 GKIGTTGRGIGPAYEDKVG--RRALRVQDLFD--PKTFADRLRENLDFHNFVLTQYLGGA 50116 G+ G+GIG A + +RV L D +T ++LR H + + G Sbjct: 132 ---GSCGKGIGEAVRQHLAMPNLTIRVGHLRDLSLRTSLEQLR-----HYLLNAADVAGR 183 Query: 50115 AVDFQATLDTMLGYADRLKPMVADVSRRLY----------DAN-------NAGQNLLFEG 49987 D + +D + DR + + ++ R Y D + G ++FEG Sbjct: 184 REDDDSFIDRTV-LEDRF--LSSHLAERYYAWTKRVGIVDDGDTWLGRYLRGGHTVIFEG 240 Query: 49986 AQGTLLDIDHGTYPFVT-SSNCXXXXXXXXXXXGPQKLNYILGITKAYCTRVGSGPFPSE 49810 AQG LLD G +P+ T S+ Q LG+ ++Y TR G+GPF +E Sbjct: 241 AQGVLLDEWAGFHPYTTWSTTTPQNALALTTAARSQVAPINLGVVRSYATRHGNGPFVTE 300 Query: 49809 LYDADNPQRQDQVGITLANVGKEFGSVTGRPRRTGWLDAAALRRSIQING-VSGLCMTKL 49633 + D + + G+ R G LD ALR + + G + GL +T L Sbjct: 301 DPELDFDEPHNHEGMWQGKF------------RQGHLDLVALRYAASVCGQLDGLVVTHL 348 Query: 49632 D 49630 D Sbjct: 349 D 349 >ref|NP_047257.1|putative replication protein RepB Length = 276 Score = 91.7 bits (226), Expect = 3e-17 Identities = 80/240 (33%), Positives = 123/240 (51%), Gaps = 8/240 (3%) Frame = -2 Query: 124108 LDRMTSGMHGGELIIVAGRPSMGKTAFSMNI--GEYVAVEYGLPVAVFSMEMPGTQLVMR 123935 LD+ +G+ +L I AGRP+ GKT F +N+ +++ + FS+EM +++ R Sbjct: 31 LDKNLNGLISNQLYIFAGRPATGKTTFVLNLILKTIQSLKSNEVLVFFSLEMSIKEVLNR 90 Query: 123934 MLGSIGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLAR 123755 +L L + + E L +D+ N ++ S L Sbjct: 91 ILKINSVLKIENL------------------DLEERLLIVDDVEQNND-KIHSLILDL-N 130 Query: 123754 QCGKLGLIIVDYLQLMSGS-SQGENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQ 123578 + K+ I +D+LQL+ S S R +I+ I+R LK LA++L+V V A+SQL+R E+ Sbjct: 131 KTKKVKAIFIDHLQLLDMSDSTNLIRYEKITRITRELKKLARKLNVNVFAISQLSREFEK 190 Query: 123577 RPNKR----PVMSDLRESGAIEQDADVILFIYRDEV-YNPDSPDKGTAEIIIGKQRNGPI 123413 R PV+SDLRESG+IEQDADV+LF+ +V Y + K I I K RNG + Sbjct: 191 RQVNNELAIPVLSDLRESGSIEQDADVVLFLSNQKVDYRFRNMSK--CLISIAKNRNGKL 248 >ref|NP_061653.1|transposase Length = 328 Score = 88.6 bits (218), Expect = 2e-16 Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 2/135 (1%) Frame = -1 Query: 155642 GHWEGDLLKGAANRS--AXXXXXXXXXXXXXLAKLKDATAASALEGFTAKLRSIAEPMRK 155469 GHWE D + + +S + D ++ S ++ + + K Sbjct: 174 GHWEADTIVSSRGKSKGCIATFAERKSRYYYCVLMPDRSSNSMETAINNLIKHLPKGAVK 233 Query: 155468 TLTYDRGKEMARHPELSEATGIRVYFCDPRSPWQRGSCENINGLLRQYLPKGTDLSVYSQ 155289 T+T DRGKE + + + I VYF DP S WQRG+ EN NGLLR++ PK TDL+ +Q Sbjct: 234 TITVDRGKEFSCYQNIENQFNINVYFADPYSAWQRGTNENTNGLLREFFPKKTDLAKVNQ 293 Query: 155288 EELDAIADRLNSRPR 155244 E+L+ D +N RPR Sbjct: 294 EQLNYALDSINYRPR 308 Score = 57.4 bits (137), Expect = 6e-07 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 1/168 (0%) Frame = -2 Query: 156202 YQHLSAEERATIMILLQQGCSARGIARTLRRSPSTITREIRRALQWPQRTAFVPAGSGGC 156023 Y HL+ ERA I +L Q+ S R IAR L+RS STI+REI R A + Sbjct: 16 YNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISR----NNLNQSYQAETAQK 71 Query: 156022 TYDXXXXXXXXXXXRLKRRRHPKLAEDGVLFGVVHHFLLEGWSPSQIAGTLKRMWPDDLD 155843 Y+ R P+L ++ ++L WSP QI G L L Sbjct: 72 NYETKRKLCGR-----PTRFTPELG------NIIKYYLKCHWSPEQIVGRL-------LQ 113 Query: 155842 RRVSHETIYNCIYAMPRGELRKELIACLRRAQAKRMPR-SRGQDRRGQ 155702 ++ +TIY I + + ELI+CLR+ ++ P+ +RG+ G+ Sbjct: 114 NQICFKTIYRWINS---NMINFELISCLRQKGKRQKPKETRGKFNIGR 158 >ref|NP_597931.1|PhoH-like protein Length = 384 Score = 84.7 bits (208), Expect = 3e-15 Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 1/171 (0%) Frame = +1 Query: 119500 GITARNREQNFALNLLMNPEIDFVTLLGQAGTGKTXXXXXXXXXXXXDDKRYNEIIVTRA 119679 G+ R +Q ++ L F+ LG AGTGKT K ++I++TR Sbjct: 177 GLVPRTDKQKDLIDALKTSRQVFI--LGPAGTGKTYVTATYASDLYTT-KEIDKIVITRP 233 Query: 119680 TVPVGEDIGFLPGTEEEKMQPWMGAFDDNLEVLQKTDDAAGEWGRAATQELIRS-RLKVK 119856 V VG+++GFL G EK PW L+VL+K G+ A + I++ +++ Sbjct: 234 HVAVGKELGFLKGDLTEKTMPWALPV---LDVLEK------HLGKGAVETGIKNGNIEMA 284 Query: 119857 SMNFMRGRTFVDKYLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQID 120009 + MRGR+F + ++I+DE QN++ ++K L+TR G GT IV G+ Q D Sbjct: 285 PLALMRGRSFDNAFIIVDETQNISTHELKMLLTRVGEGTTIVLNGDAQQSD 335 >ref|NP_076827.1|Csp Length = 66 Score = 83.6 bits (205), Expect = 8e-15 Identities = 40/64 (62%), Positives = 48/64 (75%) Frame = -3 Query: 200895 MDTGIVKWFNDSKGFGFITPDNGGDDLFAHFSEIRADGFKTLAENQKVSFETKQGPKGLQ 200716 M G VKWFN KGFGFIT + G DLFAHFS I++DGFK+L E QKV F+ ++G +GLQ Sbjct: 1 MANGTVKWFNADKGFGFITSEEG-KDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQ 59 Query: 200715 AANI 200704 A NI Sbjct: 60 AVNI 63 >ref|NP_064752.1|RPprimase Length = 522 Score = 64.7 bits (156), Expect = 4e-09 Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 7/250 (2%) Frame = -2 Query: 124153 ANPSDVTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAV 123974 + P + P F L+RMT G+ GELI +GKT I + + V Sbjct: 257 STPPEYDCVPYPFSGLNRMTKGLRTGELITFVAGTGVGKTQVMREILYSLIQQDKGNVGT 316 Query: 123973 FSMEMPGTQLVMRMLGSIGRLDQHRMRTGRLTDEDWPK--LTHAVQK-MSEAQLFIDETG 123803 +E P + M+ H LTD + K +A + + ++F+ ++ Sbjct: 317 LFLEEPVRDTGLGMMSIQAEKPLH------LTDTIYTKEEFDNAYENTLGTGRVFLYDSF 370 Query: 123802 GLNPME-LRSRARRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKEL 123626 G N +E + S R LAR C II+D++ ++ S ++ + EI+ LK+L EL Sbjct: 371 GSNSVERIVSMVRYLARSCD-CKFIILDHISIVV-SDHAKDERKALDEIATKLKTLTVEL 428 Query: 123625 DVPVIALSQLNRGLEQRPNKRP---VMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKG 123455 D+ ++ +S LNR ++P + + D+R + I Q +++I+ + R+ D ++ Sbjct: 429 DICLLMVSHLNRDKNRKPPEEGGTINLQDIRGTAGIGQLSNIIIALERN-TQADDELERN 487 Query: 123454 TAEIIIGKQR 123425 T + + K R Sbjct: 488 TTRVRVIKNR 497 >ref|NP_612844.1|Gp15 protein Length = 983 Score = 64.3 bits (155), Expect = 5e-09 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Frame = -1 Query: 70925 KNKGVNIGGTAGEAVKAAADGRVVYSGNGLRGYGNLIIIKHDATYLTAYAHNRALMVKEG 70746 K+ G++ G G V+ + DG V+ YG + + H +T YAHN L+V EG Sbjct: 877 KHDGIDFGTPIGTPVRVSKDGVVIKRRELTTSYGKYLFVDHGGGLITIYAHNSELLVNEG 936 Query: 70745 DAVTKGQKIAEMGNS-DADRVMLHFEVRRQGKP 70650 D V +GQ IA+ GN+ ++ LH+E+R G P Sbjct: 937 DRVKRGQIIAKTGNTGNSTGPHLHWELRVNGIP 969 >ref|YP_195230.1|PhoH Length = 250 Score = 63.9 bits (154), Expect = 6e-09 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 4/160 (2%) Frame = +1 Query: 119581 GQAGTGKTXXXXXXXXXXXXDDKR-YNEIIVTRATVPVGEDIGFLPGTEEEKMQPWMGAF 119757 G AGTGKT D+ Y+++ + R+ V E IGFLPGT E+K + + Sbjct: 58 GCAGTGKTFVALYLALKDVLDEYTPYDKVYIVRSLVATRE-IGFLPGTHEDKASLYQIPY 116 Query: 119758 DDNLE-VLQKTDDAAGE--WGRAATQELIRSRLKVKSMNFMRGRTFVDKYLIIDEAQNLT 119928 + ++ + + DD + E + QE I S +F+RG T + +I+DE QNL Sbjct: 117 KNMVKSMFEMPDDPSFEMLYENLKQQETI----SFWSTSFLRGSTLDNSIIIVDECQNLN 172 Query: 119929 PKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTY 120048 ++ +++TR G +KI+ G+ Q D E + L + Sbjct: 173 FHELDSIMTRVGQDSKIIFCGDANQSDLQKTNERTGILDF 212 >ref|NP_046572.1|ABC transporter Length = 705 Score = 63.2 bits (152), Expect = 1e-08 Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 5/217 (2%) Frame = -3 Query: 186855 VLDNVSFVAPRGSVTVIVGPSGSGKSTLLRTINHLERVDDGFIDIDGELIGYRREGDVLY 186676 ++++++ + R +I+G SG+GKST ++++ L +V D I ++G Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNG------------L 545 Query: 186675 ELNERDVLKRRTAVGMVFQNFNLFPHLTVLENLIEAPVAVGGVAHDXXXXXXXXXXXRVG 186496 ++N D L R + + +N LF T+ ENL + + + Sbjct: 546 DINRYDHLSIRKRIVYIDENPFLFKG-TIKENLCMGEIFDQNEIEN--ACIMSQCHEFIC 602 Query: 186495 LADKADAYP-----RQLSGGQQQRVAIARALALRPKVLLFDEPTSALDPELVNEVLDVIK 186331 DK +Y LS GQ+QR+A+ARA+ +P+VL+ DE S +DP+ N L + + Sbjct: 603 NLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPD--NTKL-IYE 659 Query: 186330 ELARSGTTLVIVTHEIGFAREVADNVLFMERGRIVES 186220 L R ++++TH + ++F RI+ES Sbjct: 660 TLHRMDCLIILITHNDPSNFKYNKKLVF-RNNRIIES 695 Score = 47.8 bits (112), Expect = 5e-04 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 11/174 (6%) Frame = +1 Query: 203794 DRFVLLGPSGCGKSTLLKAIGGFIEPVSGSIALDGRPV----HGPGPDRIVVFQEFDQLP 203961 D+ +++G SG GKST K++ + SI L+G + H RIV E L Sbjct: 510 DKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLF 569 Query: 203962 PWKTVVENVAF-------PLRAAAKLSRAEARERALHYLDKVGLAAFADAYPHTLSGGMK 204120 T+ EN+ + A +S+ + LDK ++ + LS G K Sbjct: 570 KG-TIKENLCMGEIFDQNEIENACIMSQCH---EFICNLDKQYSYKLSENGSN-LSTGQK 624 Query: 204121 QRVAIARALAMQPRVLLMDEPFAALDALTRRKMQEELLRLWDEFRFTLLFVTHS 204282 QR+A+ARA+ QP+VL++DE + +D + + E L R+ ++ +TH+ Sbjct: 625 QRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM----DCLIILITHN 674 Score = 45.8 bits (107), Expect = 0.002 Identities = 31/91 (34%), Positives = 55/91 (60%) Frame = -2 Query: 9277 LSGGQQQRVALARSLVKRPKVLLLDEPMSALDKQIRQRTQIELVNILQKVGVTCIMVTHD 9098 LS GQ+QR+ALAR+++ +P+VL+LDE +S +D T++ + L ++ I++TH+ Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNIDP---DNTKL-IYETLHRMDCLIILITHN 674 Query: 9097 QEEAMTMANRLAVMSEGQIVQIGSPSEVYEY 9005 + + N+ V +I++ S SE EY Sbjct: 675 -DPSNFKYNKKLVFRNNRIIE-SSYSENKEY 703 Score = 43.9 bits (102), Expect = 0.007 Identities = 19/58 (32%), Positives = 40/58 (68%) Frame = -2 Query: 18922 ADVAPGWKLRVLLAQALFSKPDVLLLDEPTNNLDINSIRWLEHTLNEYNSTMIIISHD 18749 ++++ G K R+ LA+A+ +P VL+LDE +N+D ++ + + TL+ + +I+I+H+ Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCLIILITHN 674 Score = 38.1 bits (87), Expect = 0.37 Identities = 19/46 (41%), Positives = 28/46 (60%) Frame = +3 Query: 22329 LDKRASELSGGEAQIVALLRVLQLEPDVLLLDEPTSALDPASARAI 22466 L + S LS G+ Q +AL R + +P VL+LDE S +DP + + I Sbjct: 612 LSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLI 657 >ref|NP_803754.1|ORF188 Length = 352 Score = 62.8 bits (151), Expect = 1e-08 Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 12/183 (6%) Frame = -3 Query: 142959 GKFITFEGIDGAGKTTHLQWFCERLQAKLAAGDRQVVVTREPGGTPLGEALREMLL---- 142792 G F+ EG +G GKTT + E L+ + + VV REPGGT E +R+ML+ Sbjct: 3 GLFVCIEGTEGVGKTTVTKMVVEELRKR----NYDVVAMREPGGTATSEKIRQMLIWPEF 58 Query: 142791 -NQPMDLETEALLMFAARREHLARVIEPALARGDWVVSDRFTDATFA-----YQGGGRGL 142630 ++ E + L+ A R ++ +I PAL V+++RF +T+A ++ L Sbjct: 59 KDEVRPPEFDVLMHSAGRMLNVENIIRPALKDDKIVITERFIASTYALNVVPFEETNPYL 118 Query: 142629 PRDKLEALERWVQGGFQPDLTVLFDVAPQVASERR--GAARAPDKFESETDAFFTRTRDE 142456 + ++ L+ + P+ F AP+ ++R R D +ES+ ++F + + Sbjct: 119 SKLFMDILQGTLHS--IPEPATFFLTAPEEVRKKRIEMRDRGLDYYESKGSSYFNKVDEG 176 Query: 142455 YLR 142447 Y R Sbjct: 177 YGR 179 >ref|NP_050160.1|hypothetical protein Length = 1487 Score = 62.0 bits (149), Expect = 2e-08 Identities = 36/96 (37%), Positives = 52/96 (54%) Frame = +3 Query: 120579 GVPYRWGGNTPTSGFDCSGLVRYVLGRAADVNLPRTTADMSSRGASIDPDQIAPGDLIFF 120758 G PY WG P S FDCSGLV+Y L R + + P + D + + QI GDL+FF Sbjct: 1102 GKPYVWGSEGPDS-FDCSGLVKYSLERQSVKSFPHYSGDQYAMSRGVKDPQI--GDLVFF 1158 Query: 120759 NTTGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLTN 120866 GR +HVG+Y G + +A S + +D +++ Sbjct: 1159 GPGGR--NHVGVYAGNGKVWSARSPRSGIGMDNVSD 1192 >ref|YP_024453.1|putative PhoH-related protein Length = 246 Score = 61.2 bits (147), Expect = 4e-08 Identities = 56/202 (27%), Positives = 86/202 (42%), Gaps = 6/202 (2%) Frame = +1 Query: 119551 NPEIDFVTLLGQAGTGKTXXXXXXXXXXXXDDKRYNEIIVTRATVPVGEDIGFLPGTEEE 119730 N ++ + QAGTGKT + R I++ PV ED+G PG + E Sbjct: 48 NDNVEILWNESQAGTGKTMCSVACAYADYLNKNRKLVFIIS----PVSEDLGSRPGNQTE 103 Query: 119731 K-MQPWMGAFDDNLEVLQKTDDAAGEW----GRAATQELIRSRLKVKSMNFMRGRTFVDK 119895 K M +MG D +E+ + E +L + S F+RG D Sbjct: 104 KEMAYFMGLHDALIELNMNPEQQITEMLMMEDNVKEDKLGDCWVSQISHLFLRGGNLRDA 163 Query: 119896 YLIIDEAQNLTPKQMKTLVTRA-GPGTKIVCLGNIAQIDTPYLTEGSSGLTYVVDRFKGW 120072 +II+EAQN ++K ++TR + ++ GN QID E SG ++ FK + Sbjct: 164 TIIINEAQNFKRSELKKVLTRVHTKNSTVIVEGNFKQIDLK--NESKSGFGDYMEYFKNY 221 Query: 120073 GHSGHVTLARGERSRLADYASD 120138 + RS+LA YA + Sbjct: 222 EGAVFHNFTVNFRSKLAQYADN 243 >ref|NP_945089.1|gp58 Length = 297 Score = 58.5 bits (140), Expect = 3e-07 Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 2/224 (0%) Frame = -2 Query: 235996 GSFTAVANHLDTTVGNISRAVSVLEDNLNTRLLQRSTRRLVVTDAGRRFYERSVAILSDI 235817 G+FT A L+ G +S+ V LE L T L R + L +T AG+++ +R AIL+D Sbjct: 22 GNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHAILADC 81 Query: 235816 XXXXXXXXXXXXEPRGLLRVHAVPGLGRQLVSQAVLAYRSAYPEVSVDLMLSQRMPNLLE 235637 L + G ++ + + + +PEVSV +++ + + NL Sbjct: 82 VEATALVMKEQTPHS--LTIACASGTATLFLADRIAEFSAEHPEVSVRILVREGVFNLNA 139 Query: 235636 EQLDVAIVIARTLPDSAYVSQKIGTSHCILAASPDYLARHPAPECVEDLVGHTCVLLSTV 235457 + D+ + R +P I +P +LA P +DL+ T ++ Sbjct: 140 AEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVPP--QDLMEATLLVAEEQ 197 Query: 235456 DYAPDEWH--LQGRAGEAVYRPTGSHFSVNDMDAMSTVLREGAG 235331 W + GE +RP + S N + + G G Sbjct: 198 QRQWMGWRDWFRLTVGEIGFRPART-ISANSYPVLLQLALHGHG 240 >ref|NP_818206.1|gp133 Length = 948 Score = 57.8 bits (138), Expect = 5e-07 Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Frame = +3 Query: 120564 AMSLVGVPYRWGGNTPTSGFDCSGLVRYVLGRAADVNLPRTTADMSSRGASIDPDQIAPG 120743 A + +G PY WG P S +DCSGL+ R+ + + RTT D + +I P + PG Sbjct: 519 ARAQIGRPYVWGATGPAS-YDCSGLMLAAY-RSIGIEIGRTTYDEVATCTTIPPTNLVPG 576 Query: 120744 DLIFFNTTGRPH-SHVGIYVGKLRFVNAPSTGGTVR 120848 DLI +PH HV ++ G V+AP TG V+ Sbjct: 577 DLI------QPHDGHVVMWTGNGTVVHAPQTGDVVK 606 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 57.4 bits (137), Expect = 6e-07 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 4/109 (3%) Frame = -1 Query: 70943 NGFDDAKNKGVNIGGTAGEAVKAAADGRVVYSGNGLRGYGNLIIIKHDATYLTAYAHN-R 70767 +G + +KG + AG A+K+ G+V +G + GN ++IK D + Y H Sbjct: 1573 SGLRSSPHKGTDFAAKAGTAIKSLQSGKVQIAGYS-KTAGNWVVIKQDDGTVAKYMHMLN 1631 Query: 70766 ALMVKEGDAVTKGQ---KIAEMGNSDADRVMLHFEVRRQGKPVDPLKYL 70629 VK G +V GQ K+ GNS + LH ++ + GK +DP KY+ Sbjct: 1632 TPSVKAGQSVKAGQTIGKVGSTGNSTGNH--LHLQIEQNGKTIDPEKYM 1678 >ref|YP_024984.1|adenylosuccinate synthetase Length = 343 Score = 57.0 bits (136), Expect = 8e-07 Identities = 81/317 (25%), Positives = 125/317 (39%), Gaps = 12/317 (3%) Frame = -3 Query: 50625 QWGDEGKGKIVDWLTD-HAQGVVRFQGGHNAGHTLIIG-GKKTILRLIPSGIMREGVA-C 50455 Q+G GKG I +L + + V NAGHT I G+K + +++P+GI+ + Sbjct: 11 QFGSTGKGLIAGYLAEKNGYDTVINANMPNAGHTYINAEGRKWMHKVLPNGIVSPNLKRV 70 Query: 50454 FIGNGVVLSPEALFKEIGELEEAGVNVRDRLFISEATTLILPYHIAIDQAREARKGAG-- 50281 +G G V S L +EI ++ L + LI P +D+ + G Sbjct: 71 MLGAGSVFSINRLMEEIEMSKD--------LLHDKVAILIHPMATVLDEEAHKKAEVGIA 122 Query: 50280 -KIGTTGRGIGPAYEDKVGRRALRVQDLFDPKTFADRLRENLDFHNFVLTQYLGGAAVDF 50104 IG+TG+G A +K+ R DP R+ + QY G Sbjct: 123 TSIGSTGQGSMAAMVEKLQR---------DPTNNTIVARD--------VAQYDG------ 159 Query: 50103 QATLDTMLGYADRLKPMVADVSRRLYD-ANNAGQNLLFEGAQGTLLDIDHGTYPFVTSSN 49927 R+ V V +D A A + +L EGAQG L ++ YP+ TS + Sbjct: 160 ------------RIAQYVCTVEE--WDMALMASERILAEGAQGFSLSLNQEFYPYCTSRD 205 Query: 49926 CXXXXXXXXXXXGPQKLNYILGITKAYCTRVG---SGPFPSELYDADNPQRQDQVGITLA 49756 C LN ++G + + RVG G +P DQ +T Sbjct: 206 CTPARFLADMGIPLPMLNKVIGTARCHPIRVGGTSGGHYP------------DQEELTWE 253 Query: 49755 NVGK--EFGSVTGRPRR 49711 +G+ E +VT + RR Sbjct: 254 QLGQVPELTTVTKKIRR 270 >ref|YP_052989.1|Hypothetical protein Length = 343 Score = 57.0 bits (136), Expect = 8e-07 Identities = 81/317 (25%), Positives = 125/317 (39%), Gaps = 12/317 (3%) Frame = -3 Query: 50625 QWGDEGKGKIVDWLTD-HAQGVVRFQGGHNAGHTLIIG-GKKTILRLIPSGIMREGVA-C 50455 Q+G GKG I +L + + V NAGHT I G+K + +++P+GI+ + Sbjct: 11 QFGSTGKGLIAGYLAEKNGYDTVINANMPNAGHTYINAEGRKWMHKVLPNGIVSPNLKRV 70 Query: 50454 FIGNGVVLSPEALFKEIGELEEAGVNVRDRLFISEATTLILPYHIAIDQAREARKGAG-- 50281 +G G V S L +EI ++ L + LI P +D+ + G Sbjct: 71 MLGAGSVFSINRLMEEIEMSKD--------LLHDKVAILIHPMATVLDEEAHKKAEVGIA 122 Query: 50280 -KIGTTGRGIGPAYEDKVGRRALRVQDLFDPKTFADRLRENLDFHNFVLTQYLGGAAVDF 50104 IG+TG+G A +K+ R DP R+ + QY G Sbjct: 123 TSIGSTGQGSMAAMVEKLQR---------DPTNNTIVARD--------VAQYDG------ 159 Query: 50103 QATLDTMLGYADRLKPMVADVSRRLYD-ANNAGQNLLFEGAQGTLLDIDHGTYPFVTSSN 49927 R+ V V +D A A + +L EGAQG L ++ YP+ TS + Sbjct: 160 ------------RIAQYVCTVEE--WDMALMASERILAEGAQGFSLSLNQEFYPYCTSRD 205 Query: 49926 CXXXXXXXXXXXGPQKLNYILGITKAYCTRVG---SGPFPSELYDADNPQRQDQVGITLA 49756 C LN ++G + + RVG G +P DQ +T Sbjct: 206 CTPARFLADMGIPLPMLNKVIGTARCHPIRVGGTSGGHYP------------DQEELTWE 253 Query: 49755 NVGK--EFGSVTGRPRR 49711 +G+ E +VT + RR Sbjct: 254 QLGQVPELTTVTKKIRR 270 >ref|NP_040341.1|putative transposase Length = 322 Score = 57.0 bits (136), Expect = 8e-07 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 2/135 (1%) Frame = -1 Query: 155642 GHWEGDLLKGAANRSAXXXXXXXXXXXXXLAKLKDATAASALEGFTAKL--RSIAEPMRK 155469 G E D + G ++SA KL++ TA + F + ++ ++ Sbjct: 173 GWLEMDTVVGKDHKSAILVLVEQLSKKYFAIKLENHTAREVEKKFKDIIIKNNLIGKIKG 232 Query: 155468 TLTYDRGKEMARHPELSEATGIRVYFCDPRSPWQRGSCENINGLLRQYLPKGTDLSVYSQ 155289 +T DR KE ++ E+ +VYFCD SP Q+ E +N LR + PKGTD + SQ Sbjct: 233 IIT-DRRKEFSKWREMEIFAETQVYFCDAGSPQQKPLIEYMNSELRHWFPKGTDFNKVSQ 291 Query: 155288 EELDAIADRLNSRPR 155244 +++D + + +N + R Sbjct: 292 KQIDWVVNVINDKLR 306 >ref|NP_052088.1|helicase Length = 504 Score = 52.8 bits (125), Expect = 1e-05 Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 12/224 (5%) Frame = -2 Query: 124120 GFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLV 123941 G L+ T G GGE+I+V MGK+ F G V + +E + Sbjct: 228 GCQGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQQALAWGKRMGKRVGLAMLEESVEDTI 287 Query: 123940 MRMLGSIGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEA---QLFIDETGGLNPMELRSRA 123770 M+G ++ RL D K A + +LF D+T L + A Sbjct: 288 QDMMGLNNKV--------RLRQSDEVKKAIAEDGRFDEWYDELFGDDTFHLYDSFAEAEA 339 Query: 123769 RRLARQCGKL------GLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIA 123608 RL + + +I++D++ ++ +S+ + I + LK AK V ++ Sbjct: 340 DRLLAKLAYMRTGLGCDVIVLDHISIVVSASEESDERKMIDRLMTKLKGFAKSTGVVLVV 399 Query: 123607 LSQL---NRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDE 123485 + L +G + ++DLR SGA+ Q +D I+ + R++ Sbjct: 400 ICHLKNPEKGKAHEEGRAVSITDLRGSGALRQLSDTIIALERNQ 443 >ref|NP_052087.1|DNA primase Length = 566 Score = 52.8 bits (125), Expect = 1e-05 Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 12/224 (5%) Frame = -2 Query: 124120 GFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLV 123941 G L+ T G GGE+I+V MGK+ F G V + +E + Sbjct: 290 GCQGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQQALAWGKRMGKRVGLAMLEESVEDTI 349 Query: 123940 MRMLGSIGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEA---QLFIDETGGLNPMELRSRA 123770 M+G ++ RL D K A + +LF D+T L + A Sbjct: 350 QDMMGLNNKV--------RLRQSDEVKKAIAEDGRFDEWYDELFGDDTFHLYDSFAEAEA 401 Query: 123769 RRLARQCGKL------GLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIA 123608 RL + + +I++D++ ++ +S+ + I + LK AK V ++ Sbjct: 402 DRLLAKLAYMRTGLGCDVIVLDHISIVVSASEESDERKMIDRLMTKLKGFAKSTGVVLVV 461 Query: 123607 LSQL---NRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDE 123485 + L +G + ++DLR SGA+ Q +D I+ + R++ Sbjct: 462 ICHLKNPEKGKAHEEGRAVSITDLRGSGALRQLSDTIIALERNQ 505 >ref|NP_775217.1|primase Length = 569 Score = 52.4 bits (124), Expect = 2e-05 Identities = 46/200 (23%), Positives = 78/200 (39%), Gaps = 6/200 (3%) Frame = -2 Query: 124174 IDTLYHTANPSDVTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE 123995 +D ++ A G + L +T G GE++ V G +GKT + +I + +E Sbjct: 287 VDEVFAEALEPPKWGKSYPWEGLTNLTMGQRDGEIVGVGGGTGIGKTLLAHHIAAWNIIE 346 Query: 123994 YGLPVAVFSMEMPGTQLVMRMLGSIGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEA---- 123827 +G V F +E + + G + + HR P L V+ +A Sbjct: 347 HGENVGTFLLEEQVAMTLKNIAGKVAQRAFHR-----------PDLEWDVEAFKDAAGQL 395 Query: 123826 --QLFIDETGGLNPMELRSRARRLARQCGKLGLIIVDYLQLMSGSSQGENRATEISEISR 123653 +LF+ + G N + R + +I+D + M+ TEI+ I Sbjct: 396 RGKLFMWKNKGQNDWDHIKECIRYWAVAMDVKTVILDNMTAMTNHLSPSEMNTEIARICT 455 Query: 123652 SLKSLAKELDVPVIALSQLN 123593 L +A EL + V S LN Sbjct: 456 ELAGMADELGIRVFIFSHLN 475 >ref|NP_523316.1|helicase Length = 504 Score = 52.4 bits (124), Expect = 2e-05 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 12/224 (5%) Frame = -2 Query: 124120 GFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLV 123941 G L+ T G GGE+++V MGK+ F G V + +E + Sbjct: 228 GCQGLNDRTLGARGGEVVMVTSGSGMGKSTFVRQQALAWGKRMGKRVGLAMLEESVEDTI 287 Query: 123940 MRMLGSIGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEA---QLFIDETGGLNPMELRSRA 123770 M+G ++ RL D K A + +LF D+T L + A Sbjct: 288 QDMMGLNNKV--------RLRQSDEVKKAIAEDGRFDEWYDELFGDDTFHLYDSFAEAEA 339 Query: 123769 RRLARQCGKL------GLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIA 123608 RL + + +I++D++ ++ +S+ + I + LK AK V ++ Sbjct: 340 DRLLAKLAYMRTGLGCDVIVLDHISIVVSASEESDERKMIDRLMTKLKGFAKSTGVVLVV 399 Query: 123607 LSQL---NRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDE 123485 + L +G + ++DLR SGA+ Q +D I+ + R++ Sbjct: 400 ICHLKNPEKGKAHEEGRAVSITDLRGSGALRQLSDTIIALERNQ 443 >ref|NP_523315.1|DNA primase Length = 566 Score = 52.4 bits (124), Expect = 2e-05 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 12/224 (5%) Frame = -2 Query: 124120 GFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLV 123941 G L+ T G GGE+++V MGK+ F G V + +E + Sbjct: 290 GCQGLNDRTLGARGGEVVMVTSGSGMGKSTFVRQQALAWGKRMGKRVGLAMLEESVEDTI 349 Query: 123940 MRMLGSIGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEA---QLFIDETGGLNPMELRSRA 123770 M+G ++ RL D K A + +LF D+T L + A Sbjct: 350 QDMMGLNNKV--------RLRQSDEVKKAIAEDGRFDEWYDELFGDDTFHLYDSFAEAEA 401 Query: 123769 RRLARQCGKL------GLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIA 123608 RL + + +I++D++ ++ +S+ + I + LK AK V ++ Sbjct: 402 DRLLAKLAYMRTGLGCDVIVLDHISIVVSASEESDERKMIDRLMTKLKGFAKSTGVVLVV 461 Query: 123607 LSQL---NRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDE 123485 + L +G + ++DLR SGA+ Q +D I+ + R++ Sbjct: 462 ICHLKNPEKGKAHEEGRAVSITDLRGSGALRQLSDTIIALERNQ 505 >ref|NP_848279.1|primase Length = 566 Score = 49.3 bits (116), Expect = 2e-04 Identities = 58/242 (23%), Positives = 103/242 (42%), Gaps = 17/242 (7%) Frame = -2 Query: 124159 HTANPSDVTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAF----SMNIGEYVAVEY 123992 H ++ V +G ++ T G GGE+I+V MGK+ F ++ G + + Sbjct: 278 HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKV 337 Query: 123991 GLPVAVFSMEMPGTQLV-------MRMLGSIGRLDQHRMRTGRLTDEDWPKLT-HAVQKM 123836 GL + S+E L+ +R S+ R + + DE + T H Sbjct: 338 GLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSF 397 Query: 123835 SEAQLFIDETGGLNPMELRSRARRLARQCGKLG--LIIVDYLQLMSGSSQGENRATEISE 123662 +EA ET L +LA LG +II+D++ ++ +S + I Sbjct: 398 AEA-----ETDRL--------LAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDN 444 Query: 123661 ISRSLKSLAKELDVPVIALSQL---NRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYR 123491 + LK AK V ++ + L ++G + ++DLR SGA+ Q +D I+ + R Sbjct: 445 LMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 504 Query: 123490 DE 123485 ++ Sbjct: 505 NQ 506 >ref|NP_041977.1|helicase Length = 503 Score = 49.3 bits (116), Expect = 2e-04 Identities = 58/242 (23%), Positives = 103/242 (42%), Gaps = 17/242 (7%) Frame = -2 Query: 124159 HTANPSDVTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAF----SMNIGEYVAVEY 123992 H ++ V +G ++ T G GGE+I+V MGK+ F ++ G + + Sbjct: 215 HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKV 274 Query: 123991 GLPVAVFSMEMPGTQLV-------MRMLGSIGRLDQHRMRTGRLTDEDWPKLT-HAVQKM 123836 GL + S+E L+ +R S+ R + + DE + T H Sbjct: 275 GLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSF 334 Query: 123835 SEAQLFIDETGGLNPMELRSRARRLARQCGKLG--LIIVDYLQLMSGSSQGENRATEISE 123662 +EA ET L +LA LG +II+D++ ++ +S + I Sbjct: 335 AEA-----ETDRL--------LAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDN 381 Query: 123661 ISRSLKSLAKELDVPVIALSQL---NRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYR 123491 + LK AK V ++ + L ++G + ++DLR SGA+ Q +D I+ + R Sbjct: 382 LMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 441 Query: 123490 DE 123485 ++ Sbjct: 442 NQ 443 >ref|NP_041975.1|DNA primase Length = 566 Score = 49.3 bits (116), Expect = 2e-04 Identities = 58/242 (23%), Positives = 103/242 (42%), Gaps = 17/242 (7%) Frame = -2 Query: 124159 HTANPSDVTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAF----SMNIGEYVAVEY 123992 H ++ V +G ++ T G GGE+I+V MGK+ F ++ G + + Sbjct: 278 HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKV 337 Query: 123991 GLPVAVFSMEMPGTQLV-------MRMLGSIGRLDQHRMRTGRLTDEDWPKLT-HAVQKM 123836 GL + S+E L+ +R S+ R + + DE + T H Sbjct: 338 GLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSF 397 Query: 123835 SEAQLFIDETGGLNPMELRSRARRLARQCGKLG--LIIVDYLQLMSGSSQGENRATEISE 123662 +EA ET L +LA LG +II+D++ ++ +S + I Sbjct: 398 AEA-----ETDRL--------LAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDN 444 Query: 123661 ISRSLKSLAKELDVPVIALSQL---NRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYR 123491 + LK AK V ++ + L ++G + ++DLR SGA+ Q +D I+ + R Sbjct: 445 LMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 504 Query: 123490 DE 123485 ++ Sbjct: 505 NQ 506 >ref|NP_112710.1|ORF47 Length = 918 Score = 48.5 bits (114), Expect = 3e-04 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Frame = -1 Query: 70946 LNGFDDAKNKGVNIGGTAGEAVKAAADGRVVYSG-NGLRGYGNLIIIKHDATYLTAYAHN 70770 + G + N + G + A+ DG+VV +G N YGN +IKH T YAH Sbjct: 803 ITGAQEFHNAMDLVNGNPTTPILASGDGQVVQAGSNYYDWYGNYTVIKHADGLYTGYAHQ 862 Query: 70769 RALMVKEGDAVTKGQKIAEMG-NSDADRVMLHFEVRRQGKP 70650 + V G V KGQ+I MG LHF+ Q P Sbjct: 863 SRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMDQYWP 903 >ref|NP_108727.1|minor structural protein 3 Length = 906 Score = 48.5 bits (114), Expect = 3e-04 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Frame = -1 Query: 70946 LNGFDDAKNKGVNIGGTAGEAVKAAADGRVVYSG-NGLRGYGNLIIIKHDATYLTAYAHN 70770 + G + N + G + A+ DG+VV +G N YGN +IKH T YAH Sbjct: 791 ITGAQEFHNAMDLVNGNPTTPILASNDGQVVQAGSNYYNWYGNYTVIKHADGLYTGYAHQ 850 Query: 70769 RALMVKEGDAVTKGQKIAEMG-NSDADRVMLHFEVRRQGKP 70650 + V G V KGQ+I MG LHF+ Q P Sbjct: 851 SRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMDQYWP 891 >ref|NP_076626.1|endopeptidase Length = 894 Score = 48.5 bits (114), Expect = 3e-04 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Frame = -1 Query: 70946 LNGFDDAKNKGVNIGGTAGEAVKAAADGRVVYSG-NGLRGYGNLIIIKHDATYLTAYAHN 70770 + G + N + G + A+ DG+VV +G N YGN +IKH T YAH Sbjct: 779 ITGAQEFHNAMDLVNGNPTTPILASGDGQVVQAGSNYYDWYGNYTVIKHADGLYTGYAHQ 838 Query: 70769 RALMVKEGDAVTKGQKIAEMG-NSDADRVMLHFEVRRQGKP 70650 + V G V KGQ+I MG LHF+ Q P Sbjct: 839 SRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMDQYWP 879 >ref|NP_818403.1|gp105 Length = 266 Score = 47.8 bits (112), Expect = 5e-04 Identities = 29/102 (28%), Positives = 47/102 (46%) Frame = -1 Query: 147323 LYLPVAPSLAEPLPALVYYHGGGFTVGSVDTHDALCRMFARDAQCAVLSVDYRLAPEHKF 147144 ++LP +P E P ++ GG +T+G +++DYR AP++ + Sbjct: 29 IWLPESP---ENAPVFMFIPGGAWTIGDRRGQGYAIMSHLVQQGWICVAIDYRTAPKNHW 85 Query: 147143 PTAVHDAEDALRWLHREAAAFGIDAARLAVGGDSAGGTLATV 147018 P D A W+ +G LAVGG SAGG +A++ Sbjct: 86 PAPFEDVSAAFHWVRANIHQYG-GGDFLAVGGASAGGHMASL 126 >ref|NP_663686.1|structural protein Length = 908 Score = 47.8 bits (112), Expect = 5e-04 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Frame = -1 Query: 70946 LNGFDDAKNKGVNIGGTAGEAVKAAADGRVVYSG-NGLRGYGNLIIIKHDATYLTAYAHN 70770 + G + N + G + A+ DG+VV +G N YGN +IKH T YAH Sbjct: 793 ITGAQEFHNAMDLVNGNPTTPILASNDGQVVQAGSNYYDWYGNYTVIKHADGLYTGYAHQ 852 Query: 70769 RALMVKEGDAVTKGQKIAEMG-NSDADRVMLHFEVRRQGKP 70650 + V G V KGQ+I MG LHF+ Q P Sbjct: 853 SRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMDQYWP 893 >ref|NP_046573.1|putative thioredoxin Length = 137 Score = 47.8 bits (112), Expect = 5e-04 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Frame = +1 Query: 79081 QDVVKSDKPVLVDFWAEWCGPCKMIAPILDEVAKDYGDKLQIAKINVDD----NQATPAK 79248 Q V S KP + + C PC+ I P L+EV K +KL++ +N+++ N K Sbjct: 40 QKEVDSKKPKFIYVYETSCPPCQEIKPELNEVIKK--EKLKVQALNIEEKENYNTEFLDK 97 Query: 79249 FGVRGIPTLILFKNGAAAAQKVGALSKSQLTAFLDSH 79359 + + PT++ +K+G + G S SQ+ F D + Sbjct: 98 YNLNKTPTILYYKDGKEKDRLEGYRSASQIEKFFDKN 134 >ref|NP_536425.1|putative helix-turn-helix transcriptional regulator Length = 128 Score = 47.8 bits (112), Expect = 5e-04 Identities = 25/59 (42%), Positives = 35/59 (59%) Frame = -3 Query: 229734 IRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTMQYFIDTP 229558 +RA R L++T D A AGISKP+LSQ+E + + L +IA AL V + I+ P Sbjct: 66 VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVPVDDLIELP 124 >ref|NP_945111.1|gp80 Length = 128 Score = 47.8 bits (112), Expect = 5e-04 Identities = 25/59 (42%), Positives = 35/59 (59%) Frame = -3 Query: 229734 IRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTMQYFIDTP 229558 +RA R L++T D A AGISKP+LSQ+E + + L +IA AL V + I+ P Sbjct: 66 VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVPVDDLIELP 124 >ref|NP_690787.1|immunity repressor Length = 144 Score = 47.4 bits (111), Expect = 6e-04 Identities = 22/66 (33%), Positives = 42/66 (63%) Frame = -3 Query: 229752 VSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTMQY 229573 +++G +I+A+R+ KLT + A A +S+ +L+ +ER R PS+++L +A ALG+ + Sbjct: 1 MTVGQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSA 60 Query: 229572 FIDTPT 229555 + T Sbjct: 61 IVGEET 66 >ref|NP_813761.1|putative primase Length = 562 Score = 46.6 bits (109), Expect = 0.001 Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 5/214 (2%) Frame = -2 Query: 124111 DLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLVMRM 123932 +L +MT GGE+I+V GK+ F + +P V +E + V + Sbjct: 290 ELKKMTKDCRGGEVILVTSGSGSGKSTFVRQNVYNLFHNESIPCGVAMLEEAVEETVQDI 349 Query: 123931 LG-SIGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLAR 123755 +G IG + R T+E + + + + + L+ D L ++ + Sbjct: 350 VGLHIGA--RVRQNPDETTEEVFDRAFDEIFESDKLFLY-DAFAEAAEDRLLAKLAYMVE 406 Query: 123754 QCGKLGLIIVDYLQLMSGSSQG-ENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQ 123578 G +I++D++ ++ + G ++ I + +K+ AK +V V + L + Sbjct: 407 AEG-CRVIVLDHISIVVSAMDGDQDERKTIDRLMTKIKAFAKTKNVAVFVICHLKNPDKG 465 Query: 123577 RPNK--RP-VMSDLRESGAIEQDADVILFIYRDE 123485 +P++ RP V++DLR SG + Q +D I+ + R++ Sbjct: 466 KPHEEGRPIVVTDLRGSGGLRQLSDTIIALERNQ 499 >ref|YP_024964.1|putative prophage repressor protein Length = 244 Score = 46.6 bits (109), Expect = 0.001 Identities = 24/67 (35%), Positives = 39/67 (58%) Frame = -3 Query: 229755 AVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTMQ 229576 A +G +IR LR+ LTL + A + GIS+ +S+ E GR+ P LV +A+ L ++ Sbjct: 4 AQHIGTRIRELRKAKGLTLQQLADVFGISRASVSEWESGRSKPDANKLVLLAKELHTAVE 63 Query: 229575 YFIDTPT 229555 Y ++ T Sbjct: 64 YLLNGDT 70 >ref|YP_164769.1|orf134 Length = 1062 Score = 46.2 bits (108), Expect = 0.001 Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 14/110 (12%) Frame = +3 Query: 120606 TPTSGFDCSGLVRYVLGRAA------------DVNLPRTTADMSSRGA--SIDPDQIAPG 120743 +P G DCS V Y A D+ +SS G+ S ++ G Sbjct: 948 SPARG-DCSQFVYYCYKEAGLDISHGGSWTTWDIAKSSNLKTISSNGSNKSSAKKKMKNG 1006 Query: 120744 DLIFFNTTGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLTNPYWAKRFDG 120893 D+IFFNT G SH+GIY+G +FV S + L+N YW F G Sbjct: 1007 DIIFFNTEGTD-SHMGIYIGDGKFVGFQSEPNMLSQASLSNSYWQGAFGG 1055 >ref|NP_777327.1|hypothetical protein Length = 196 Score = 45.4 bits (106), Expect = 0.002 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 8/91 (8%) Frame = -1 Query: 70916 GVNIGGTAG------EAVKAAADGRVVYSGNGLRGYGNLIIIKH-DATYLTAYAHNRALM 70758 GV++ G G + V A DGRVV +G +G ++++ H A T Y H R ++ Sbjct: 52 GVDLNGPGGGDTDCGQPVHAMTDGRVVIAGR-FPVWGGMVVLWHPSAGVWTRYGHLRDIL 110 Query: 70757 VKEGDAVTKGQKIAEMGN-SDADRVMLHFEV 70668 V GD V GQ+I +G + LHF+V Sbjct: 111 VHPGDVVVAGQQIGTIGKMTTGGYCHLHFDV 141 >ref|YP_195157.1|sliding clamp loader gp44 Length = 315 Score = 45.1 bits (105), Expect = 0.003 Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 6/197 (3%) Frame = -1 Query: 78398 KWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV 78219 ++RPK + + + ++ G + + L TG+ GVGKTT+++ + + V Sbjct: 11 QYRPKSVDDCILPTSIKNSFKAFVEQGEIPNL-LLTGSAGVGKTTIAKAVCEQIGASYIV 69 Query: 78218 TSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEV 78039 + DEGRF+D V NR V + A + AP KV +IDE Sbjct: 70 INGS----------DEGRFLDTVR-----NR-VRQFATTVSLTSGAP----HKVVIIDEA 109 Query: 78038 HMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC--LQFNLK----QMPAGH 77877 T+ ++ +EE + +FI KI + SRC + F +K Q+ G Sbjct: 110 DNTTHDVQLSLRTAVEEFHGNCRFIFTCNFQNKIIEPLHSRCTVIDFRIKKEQEQILQGQ 169 Query: 77876 IVSHLERILGEEQISFE 77826 L+ IL + +I ++ Sbjct: 170 FFVRLKGILDDNKIVYD 186 >ref|NP_570328.1|RP primase Length = 531 Score = 43.9 bits (102), Expect = 0.007 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%) Frame = -2 Query: 124117 FVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLVM 123938 F L+ T G+ GEL+ + GK+ I + + V ++E + + Sbjct: 268 FAALNSTTGGLRLGELVTITAGSGTGKSTLCGEIAVSL-INQDQRVGYIALEESVKRTGL 326 Query: 123937 RMLGSIGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFI-DETGGLNPMELRSRARRL 123761 R++ H + TDE T + ++F+ D G ++P L + R L Sbjct: 327 RLMTVAANKPLH-LNNELPTDE---LRTAFDSTLGTGRVFLRDGFGSVDPDSLLNDIRFL 382 Query: 123760 ARQCGKLGLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIALSQLNRGLE 123581 + ++ I++D+L ++ ++ + I + L+S +E + +I +S L R Sbjct: 383 TK-AHEVQWIVLDHLSILLSGNESTDERKMIDIVMTKLRSFVEETGIGMILISHLRRNQG 441 Query: 123580 QRPNK---RPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKGTAEIIIGKQR-NGPI 123413 + ++ + +S LR S +I Q +D+++ + RD S +++ + K R NG Sbjct: 442 DKGHEDGAQVSLSQLRGSHSIAQLSDLVIALERD-----ISKGDNRSQLRVLKNRFNGQT 496 Query: 123412 GP 123407 GP Sbjct: 497 GP 498 >ref|NP_818244.1|gp193 Length = 418 Score = 43.5 bits (101), Expect = 0.009 Identities = 47/220 (21%), Positives = 99/220 (45%), Gaps = 4/220 (1%) Frame = -2 Query: 124132 GTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPG 123953 G G +LD T G+ GEL +A +GK ++ + A+ G +F++EM Sbjct: 155 GMGFGLEELDEHTRGIRPGELAAIAAYTKVGK-SWMLAKAYCEALRRGARPVMFTLEMDR 213 Query: 123952 TQLVMRMLGSIGRLDQHRMRTGRLTDEDWPKLTHA---VQKMSEAQLFIDETGGLNPMEL 123782 ++ R+ + ++ L+ ++ +LT+A +++ + A L + G + Sbjct: 214 KEMEDRIDCMYSGVSFNKFMRRELSFDEMAQLTNAQDLLERTAVAPLVRPQRGDRTVKTM 273 Query: 123781 RSRARRLARQCGKLG-LIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIAL 123605 ++AR+L + L VD + +G S + E++ + S + ++P Sbjct: 274 FTQARQLGADFVLIDQLSWVDAEKSYTGDSALRMKHGELAYDIKEETSRSSVGELPTFLA 333 Query: 123604 SQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDE 123485 QLNR + + R +++ S IEQ D+ L +++++ Sbjct: 334 IQLNRAV-MNNDGRGALNNFANSSMIEQTVDIALGLWQNQ 372 >ref|YP_006865.1|putative thioredoxin Length = 96 Score = 43.5 bits (101), Expect = 0.009 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Frame = +1 Query: 79135 CGPCKMIAPILDEVAKDYGDKLQIAKINVDDNQATPAKFGVRGIPTLIL---FKNGAAAA 79305 C PCKM P+ D+V DY L+I K DN KFGVR +P ++L NG A Sbjct: 13 CNPCKMFEPVFDKVVNDY--NLEIHK--ETDNTELMQKFGVRQVPVVVLADRLPNGRVEA 68 Query: 79306 QKV 79314 + Sbjct: 69 NHI 71 >ref|YP_164711.1|orf76 Length = 496 Score = 42.7 bits (99), Expect = 0.015 Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 14/192 (7%) Frame = -2 Query: 124123 TGFVDLD-RMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQ 123947 +G LD + G+ GE+ ++ G GKTA N+ Y ++ V + + Sbjct: 188 SGLSTLDIALKGGLQPGEIGLICGASGFGKTAILTNLAAYYSL-------VSNNNVLYVY 240 Query: 123946 LVMRMLGSIGRLDQHRMRTG--RLTDEDWPKLTHAVQK--------MSEAQLFIDE--TG 123803 L + ++GRLD+ +G + ++D ++K S L I + T Sbjct: 241 LEGKTGDALGRLDRVITDSGYREMFNKDGYVNREFIKKGYNYYKNSKSSGNLIIKKFTTR 300 Query: 123802 GLNPMELRSRARRLARQCG-KLGLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKEL 123626 L +LR+ + L RQ K+ ++++DY LM ++ +N A + + L +A E Sbjct: 301 SLTISKLRTYIQSLERQEDFKIDVVVLDYADLMRVGNKSDNEAVSGEVLYQDLVGVADET 360 Query: 123625 DVPVIALSQLNR 123590 +V + +QLNR Sbjct: 361 NVLIWTGTQLNR 372 >ref|NP_932464.1|hypothetical protein Length = 75 Score = 42.0 bits (97), Expect = 0.026 Identities = 20/53 (37%), Positives = 28/53 (52%) Frame = +1 Query: 79120 FWAEWCGPCKMIAPILDEVAKDYGDKLQIAKINVDDNQATPAKFGVRGIPTLI 79278 F AEWC CKM+ P+L V Y D ++ D+ AK +R +PTL+ Sbjct: 5 FGAEWCANCKMVKPMLANVEYTYVD------VDTDEGVELTAKHHIRSLPTLV 51 >ref|NP_064745.1|gp7 Length = 540 Score = 41.2 bits (95), Expect = 0.044 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 1/159 (0%) Frame = +2 Query: 14507 ALTVPFTAAGKSASSRITAADLPPSSSATRLTVAAANSATRLPARVEPVNDTMSTSGSVA 14686 A + TA+ SA++ T+A S +AT + AA + + N S SGS A Sbjct: 128 AASASATASATSATNSATSA----SQAATSASAAAVSEGNAATSETNAANSATSASGS-A 182 Query: 14687 STSPTTGPYPHTRLNTPAGNPASWIASASMNALSGATSDGFRTTVQPAASAGATFSVIWL 14866 ST+ T + + A N A+ ++A+ +A + A S T + +A A+ S + Sbjct: 183 STATTQA----SAASVSATNAATSASNAATSATNAAASQAAAATSE--TNAAASESTVTT 236 Query: 14867 SG*FHGVMAATTPTGSRTT-SELPTFASNSNDSASLAYT 14980 S AAT+ + T+ S T A+N+ SAS A T Sbjct: 237 S----ATNAATSEANAATSASTATTQATNAATSASTAST 271 Score = 39.7 bits (91), Expect = 0.13 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 6/153 (3%) Frame = +2 Query: 14528 AAGKSASSRITAADLPPSSSATRL---TVAAANSATRLPARVEPVNDTMSTSGSVASTSP 14698 AA + A + A++ +S T AAA SAT A + + + S + A+ S Sbjct: 85 AAAELAENNAETAEVNAEASETAAGLSATAAATSATNAGASETAASASATASATSATNSA 144 Query: 14699 TTGPYPHTRLNTPA---GNPASWIASASMNALSGATSDGFRTTVQPAASAGATFSVIWLS 14869 T+ T + A GN A+ +A+ +A S + S TT AAS AT + S Sbjct: 145 TSASQAATSASAAAVSEGNAATSETNAANSATSASGSASTATTQASAASVSATNAATSAS 204 Query: 14870 G*FHGVMAATTPTGSRTTSELPTFASNSNDSAS 14968 A + TSE AS S + S Sbjct: 205 NAATSATNAAASQAAAATSETNAAASESTVTTS 237 Score = 38.9 bits (89), Expect = 0.22 Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 2/152 (1%) Frame = +2 Query: 14525 TAAGKSASSRITAADLPPSSSATRLTVAAANSATRLPARVEPVNDTMSTSGSVASTSPTT 14704 T+A ++A+S +AA + ++AT T AANSAT T +T S AS S T Sbjct: 145 TSASQAATSA-SAAAVSEGNAATSET-NAANSATSASGSA----STATTQASAASVSATN 198 Query: 14705 GPYPHTRLNTPAGNPASWIASASMNALSGATSDGFRTT-VQPAASAGATFSVIWLSG*FH 14881 + T A N A+ A+A+ + + A S+ TT AA++ A + + Sbjct: 199 AATSASNAATSATNAAASQAAAATSETNAAASESTVTTSATNAATSEANAATSASTATTQ 258 Query: 14882 GVMAATT-PTGSRTTSELPTFASNSNDSASLA 14974 AAT+ T S + + T +N+ SAS A Sbjct: 259 ATNAATSASTASTSATNAATSETNAASSASSA 290 >ref|YP_006616.1|Gp36 Length = 202 Score = 40.8 bits (94), Expect = 0.057 Identities = 20/59 (33%), Positives = 35/59 (59%) Frame = -3 Query: 229743 GNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTMQYFI 229567 G +++A R LK+TL + A GIS P + +ERG PS+ + +A+ L + +Q+ + Sbjct: 9 GERLKARRLELKMTLKQVAESVGISLPGVQNLERGDVMPSLEIGLALAKCLRMPVQWIL 67 >ref|NP_046933.1|gp38 Length = 202 Score = 40.8 bits (94), Expect = 0.057 Identities = 21/59 (35%), Positives = 34/59 (57%) Frame = -3 Query: 229743 GNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTMQYFI 229567 G +++A R LKLTL + A GIS P + +ERG PS+ + +A+ L +Q+ + Sbjct: 9 GERLKARRLELKLTLKQVAEAVGISLPGVQNLERGDVMPSLEIGLSLAKCLRKPVQWIL 67 >ref|NP_899326.1|gp44 Length = 318 Score = 40.8 bits (94), Expect = 0.057 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 4/170 (2%) Frame = -1 Query: 78401 RKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETG 78222 +K+RP+ V E V + +D ++ + L + + G GKTT++R + E Sbjct: 14 QKYRPQSIKDCVLPERVRKLFQKMVDDNQIPNMLLCSSSPGTGKTTVARAVLADMGYEV- 72 Query: 78221 VTSQPCGVCRACREIDEGRFVDYVEMDAASNRGV----DEMAALLERAVYAPVDARFKVY 78054 + ++A+S+RG+ +++ A ++ K Sbjct: 73 -----------------------LFVNASSSRGIGLVQNDLPAFCSTVSFS---GNPKAV 106 Query: 78053 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQF 77904 ++DE LT A A+ +E+ +V+F+L QKI + SR +F Sbjct: 107 ILDEADNLTPDAQKALRGLIEQYSKNVRFVLTCNYAQKILTPIRSRLQEF 156 >ref|NP_112716.1|LYS Length = 429 Score = 40.4 bits (93), Expect = 0.075 Identities = 20/42 (47%), Positives = 28/42 (66%) Frame = -1 Query: 71288 YRVKPGDTLYRIALENGQNYRDIAAWNNLANPNQIEVDQLLR 71163 Y VK GDTL IA G N++++A N+L+NPN I Q++R Sbjct: 333 YIVKQGDTLSGIASNWGTNWQELARQNSLSNPNVIYTGQVIR 374 >ref|NP_853570.1|DNA primase Length = 661 Score = 40.4 bits (93), Expect = 0.075 Identities = 64/286 (22%), Positives = 115/286 (40%), Gaps = 16/286 (5%) Frame = -2 Query: 124297 KEVRQLLDEAESKVFSIAEEGARGNQGFLEIGPLLTQVVERIDTLYHTANPSDVTGTPTG 124118 K+ + L +SK F A A+ + G + + + D L A P P Sbjct: 306 KDANKALMAGKSKEFVDAWFNAKSSDEVF--GSQIKSIASQRDKL-KAARPEPGLSWP-- 360 Query: 124117 FVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLVM 123938 + L+++T G+ +LIIV +GKT F + +++ E+G V + S E P +V Sbjct: 361 WPRLNKITLGIRKHQLIIVGAGSGVGKTEFLREVVKHLIEEHGESVGIISTEDP---MVK 417 Query: 123937 RMLGSIGRLDQHRMRTGRLTD--EDWPK--LTHAVQKMSEAQLFIDETGGLNPMELRS-- 123776 IG+ R+ D ED + + ++ + A ++ +TG L +L Sbjct: 418 VSRAFIGKWIDKRIELPPTNDPREDGYREVFDYTEEEANAAIDYVADTGKLFVADLEGDY 477 Query: 123775 RARRLARQC------GKLGLIIVDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPV 123614 ++ + C G +II + + + + E + + ++ V + Sbjct: 478 SMEKVEQTCLEFEAMGISNIIIDNLTGIKLDERNFGGKVGALDECVKRIGTIKDRHPVTI 537 Query: 123613 IALSQLNRGLEQRPNKRP----VMSDLRESGAIEQDADVILFIYRD 123488 +S L R QR + ++SD R SGAI A L I R+ Sbjct: 538 FLVSHLTRPSGQRTSHEEGGEVILSDFRGSGAIGFWASYALGIERN 583 >ref|YP_164705.1|orf70 Length = 638 Score = 40.0 bits (92), Expect = 0.098 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 4/62 (6%) Frame = -3 Query: 137937 LKTLAIANYRSLRELIVPLAA--LTVVTGPNGSGKSSVYRAL--RLLADTAQGRVIPSLA 137770 L+T+ I N+RS+R L + + LT+++G NG GKSS+Y A+ L T +G+ ++ Sbjct: 3 LETIKIRNFRSIRSLDFKIDSRGLTLISGKNGQGKSSIYAAILYALFNKTQKGQTADAII 62 Query: 137769 RE 137764 + Sbjct: 63 ND 64 >ref|NP_108734.1|lysin Length = 428 Score = 39.3 bits (90), Expect = 0.17 Identities = 19/41 (46%), Positives = 27/41 (65%) Frame = -1 Query: 71288 YRVKPGDTLYRIALENGQNYRDIAAWNNLANPNQIEVDQLL 71166 Y VK GDTL IA G N++++A N+L+NPN I Q++ Sbjct: 332 YVVKQGDTLSGIASNWGTNWQELARQNSLSNPNMIYAGQVI 372 >ref|NP_690779.1|ORF46 Length = 300 Score = 38.9 bits (89), Expect = 0.22 Identities = 18/42 (42%), Positives = 27/42 (64%) Frame = -1 Query: 71288 YRVKPGDTLYRIALENGQNYRDIAAWNNLANPNQIEVDQLLR 71163 Y VK GDTL IA++ G + + A+N + N N+I V Q+L+ Sbjct: 170 YTVKKGDTLSEIAVKTGVSMAKLQAYNGIKNANKITVGQVLK 211 >ref|NP_996722.1|lysin Length = 429 Score = 38.9 bits (89), Expect = 0.22 Identities = 19/41 (46%), Positives = 27/41 (65%) Frame = -1 Query: 71288 YRVKPGDTLYRIALENGQNYRDIAAWNNLANPNQIEVDQLL 71166 Y VK GDTL IA G N++++A N+L+NPN I Q++ Sbjct: 333 YIVKQGDTLSGIASNLGTNWQELARQNSLSNPNMIYSGQVI 373 >ref|NP_046716.1|thioredoxin Length = 80 Score = 38.5 bits (88), Expect = 0.28 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +1 Query: 79135 CGPCKMIAPILDEVAKDYGDKLQIAKINVDDNQATPAKFGVRGIP-TLILFKNGAAAAQK 79311 C PCKM++ L++V +Q ++V A+FGV G+P T++L G + Sbjct: 11 CNPCKMVSNYLEQV------NIQFETVDVTQEPEVAARFGVMGVPVTILLSDQGEEVNRS 64 Query: 79312 VG 79317 VG Sbjct: 65 VG 66 >ref|NP_817395.1|gp57 Length = 287 Score = 38.1 bits (87), Expect = 0.37 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 6/106 (5%) Frame = -3 Query: 201702 SANWCSTWICSGPKRRLNAMCCSGVMRWSRNTST*WSRCARWMRAKAAASSGC------D 201541 SA W + W +G R A +G WS S WS A W A++AA S Sbjct: 151 SAAWSAAWSAAGSAARSAAGSAAGSAAWSAAGSAAWS--AAWSAAESAAGSAAWSAAWSA 208 Query: 201540 RSIPTTSAPTGASSGMMSNRCAAASNDGAG*WPTRAAVAAWMAGVV 201403 SA A+ + +A+ AG + A AAW A ++ Sbjct: 209 AGSAAWSAAWSAAGSAAGSAAESAARSAAG---SAAESAAWSAALI 251 >ref|NP_663692.1|putative lysin Length = 429 Score = 38.1 bits (87), Expect = 0.37 Identities = 18/40 (45%), Positives = 27/40 (67%) Frame = -1 Query: 71282 VKPGDTLYRIALENGQNYRDIAAWNNLANPNQIEVDQLLR 71163 V+ GDTL IA G N++++A N+L+NPN I Q++R Sbjct: 335 VQSGDTLSGIASNWGTNWQELARQNSLSNPNMIYTGQVIR 374 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 38.1 bits (87), Expect = 0.37 Identities = 46/153 (30%), Positives = 56/153 (36%), Gaps = 12/153 (7%) Frame = -2 Query: 163312 CVPPAVVQRPVLPRLRQSEPEPRTQRFGRGGARCEYGIRHVQRRDLRHARQQPDRVQPGD 163133 C P A P LR PE C+ G H++ R R R + + PG Sbjct: 102 CAPAAPAAPEYAPALRPRAPE------------CDRGAHHLRTRAPR-TRTRAVPLGPGA 148 Query: 163132 VLAD--EHRPRAYPRHRPVVQGDDRP-VDAGQHRGRHPESAGRDQRKLAEPPAAPDLQRE 162962 + E R R R RP + +P + G HR R GR R A P + Sbjct: 149 RVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPR 208 Query: 162961 RRPHVGRIAPACV--------EHRRHAELR-RH 162890 RRPH P V HRR A LR RH Sbjct: 209 RRPHPEH--PRAVRPRRRTGRRHRRRASLRPRH 239 >ref|NP_803396.1|tail length tape measure protein Length = 1550 Score = 37.7 bits (86), Expect = 0.49 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Frame = -1 Query: 70889 EAVKAAADGRVVYSGNGLRGYGNLIIIKHDATYLTAYAHNRALMVKEGDAVTKGQKIAEM 70710 E V + +GR GYG + I A + YAH VK G V GQ + Sbjct: 1199 EPVPSTINGRAQVMPVHNGGYGKWVKIVKGALEVI-YAHLSKYKVKTGQQVRVGQTVGIS 1257 Query: 70709 GNSD-ADRVMLHFEVRRQGKPVDPLKYL 70629 GN+ + LH+E+R G+ DPL +L Sbjct: 1258 GNTGFSTGPHLHYEMRWNGRHRDPLPWL 1285 >ref|NP_058454.1|orf 16 Length = 539 Score = 37.7 bits (86), Expect = 0.49 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Frame = -1 Query: 70889 EAVKAAADGRVVYSGNGLRGYGNLIIIKHDATYLTAYAHNRALMVKEGDAVTKGQKIAEM 70710 E V + +GR GYG + I A + YAH VK G V GQ + Sbjct: 424 EPVPSTINGRAQVMPFHNGGYGKWVKIVKGALEVI-YAHLSKYKVKTGQQVRVGQTVGIS 482 Query: 70709 GNSD-ADRVMLHFEVRRQGKPVDPLKYL 70629 GN+ + LH+E+R G+ DPL +L Sbjct: 483 GNTGFSTGPHLHYEMRWNGRHRDPLPWL 510 >ref|NP_958298.1|hypothetical protein Length = 393 Score = 37.7 bits (86), Expect = 0.49 Identities = 21/54 (38%), Positives = 31/54 (57%) Frame = -3 Query: 229746 LGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGV 229585 LG +I A R+ +L+ E A +A +S L +ERG +PS +L +A AL V Sbjct: 8 LGARIAARRRARRLSQPELAAVAHVSLSMLRAIERGARSPSDATLEALADALDV 61 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 931,766,653 Number of Sequences: 14420 Number of extensions: 17732046 Number of successful extensions: 69263 Number of sequences better than 0.5: 89 Number of HSP's better than 0.5 without gapping: 11757 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 69017 length of database: 3,019,461 effective HSP length: 127 effective length of database: 1,188,121 effective search space used: 100014837659 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig189 (246,774 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_536387.1|conserved hypothetical protein 507 e-142 ref|NP_945061.1|gp30 507 e-142 ref|NP_945090.1|gp59 304 3e-81 ref|NP_536386.1|conserved hypothetical protein 271 3e-71 ref|NP_945060.1|gp29 271 3e-71 ref|NP_818250.1|gp199 212 1e-53 ref|NP_536385.1|conserved hypothetical protein 187 4e-46 ref|NP_945059.1|gp28 187 4e-46 ref|NP_818618.1|gp80 148 2e-34 ref|NP_944186.1|hypothetical protein 147 6e-34 ref|NP_945089.1|gp58 113 7e-24 ref|NP_046685.1|putative DNA polymerase 98 4e-19 ref|NP_943772.1|predicted amidase 87 9e-16 ref|NP_817764.1|gp3 85 3e-15 ref|NP_795485.1|putative cell wall hydrolase 82 3e-14 ref|NP_795423.1|putative cell wall amidase 82 3e-14 ref|NP_817502.1|gp53 81 4e-14 ref|NP_438163.1|cell wall hydrolase 76 2e-12 ref|NP_795599.1|putative cell wall hydrolase, lysin 76 2e-12 ref|NP_690772.1|ORF39 74 6e-12 ref|NP_046584.1|putative transglycosylase 74 8e-12 ref|NP_899372.1|exsB protein 70 7e-11 ref|NP_046572.1|ABC transporter 64 8e-09 ref|NP_665963.1|putative site specific recombinase Int2 59 2e-07 ref|NP_061531.1|integrase 59 2e-07 ref|NP_878228.1|Int 52 3e-05 ref|NP_839878.1|Int 52 3e-05 ref|NP_536628.1|Int 50 1e-04 ref|NP_052278.1|Int 49 2e-04 ref|NP_944303.1|conserved phage mega protein 48 5e-04 ref|NP_848303.1|internal virion protein 47 8e-04 ref|NP_046786.1|Int 47 8e-04 ref|NP_523341.1|internal virion protein D 47 8e-04 ref|NP_438114.1|integrase-like protein 47 0.001 ref|NP_795541.1|putative integrase 47 0.001 ref|NP_958084.1|gp27 47 0.001 ref|NP_817766.1|gp5 46 0.001 ref|NP_042004.1|internal virion protein D 46 0.001 ref|NP_536807.1|integrase 45 0.002 ref|NP_043466.1|integrase 45 0.002 ref|NP_795660.1|putative integrase 45 0.003 ref|NP_862840.1|gp1 45 0.003 ref|NP_818239.1|gp188 45 0.003 ref|NP_817765.1|gp4 45 0.004 ref|YP_003740.1|hypothetical protein 45 0.004 ref|NP_996677.1|phage repressor 44 0.005 ref|YP_024840.1|Pas54 44 0.005 ref|NP_663635.1|putative integrase 44 0.007 ref|NP_108682.1|cI2009 43 0.015 ref|NP_050999.1|P38 43 0.015 ref|NP_076635.1|integrase 42 0.025 ref|NP_795429.1|putative integrase 41 0.043 ref|NP_150133.1|integrase 41 0.043 ref|NP_852723.1|putative integrase 41 0.043 ref|YP_006360.1|Int 40 0.073 ref|YP_164061.1|endolysin 40 0.095 ref|NP_720278.1|Int 40 0.12 ref|NP_680502.1|integrase 40 0.12 ref|NP_958680.1|Bbp11 40 0.12 ref|NP_996573.1|hypothetical protein predicted by GeneMark 40 0.12 ref|NP_996621.1|hypothetical protein predicted by GeneMark 40 0.12 ref|NP_059584.1|Int 39 0.16 ref|NP_958623.1|77ORF007 39 0.21 ref|NP_599058.1|integrase 39 0.28 ref|NP_818575.1|gp37 39 0.28 ref|NP_958267.1|hypothetical protein 39 0.28 ref|NP_543063.1|putative lambda repressor 39 0.28 ref|NP_777346.1|hypothetical protein 39 0.28 ref|NP_817384.1|gp46 38 0.36 ref|NP_958209.1|gene 33 protein 38 0.36 ref|NP_061549.1|Orf53 38 0.47 ref|NP_899531.1|conserved hypothetical protein 38 0.47 >ref|NP_536387.1|conserved hypothetical protein Length = 363 Score = 507 bits (1305), Expect = e-142 Identities = 241/358 (67%), Positives = 294/358 (82%) Frame = -2 Query: 242288 MDKNFINWAKANQDQALIANGLLEPRYATGGIGAAFVVRAALYFERAYDAGVRAAIAECF 242109 MD+NF+ WAKANQ +AL+ NGLLEPRYATGGIGAA VVRA+LYFERA+D VRAA+A+CF Sbjct: 1 MDQNFLEWAKANQGKALVPNGLLEPRYATGGIGAAVVVRASLYFERAFDPAVRAAVADCF 60 Query: 242108 DEFAKCAPDKLTFVWHNGKAAQAFKKAKPMQALAASLSPEDRFDFAYVGGKDATDASLYQ 241929 D++ KLTF+W NGKAAQ F +AKP++A A+ L PEDRFDF YVGG+ A+DAS ++ Sbjct: 61 DDYCAVPECKLTFLWSNGKAAQPFARAKPLRAAASKLGPEDRFDFCYVGGEQASDASFWR 120 Query: 241928 FTITGLRQRQEKAGNRGLNALSFSMPLVDVQENPDAFVRLFFDAAKRLNAVHGHAGFAVN 241749 F + G RQ QEK GNRGLN+L+FS P+V VQENPDAF +LFFDAA+RL+AV G AGFAVN Sbjct: 121 FEVVGQRQWQEKMGNRGLNSLAFSWPVVAVQENPDAFAKLFFDAARRLDAVQGQAGFAVN 180 Query: 241748 LSPTAVNENEPTEYWISRMMPGLDVGSPSDLATRQLSGKIKTVDWLTAIDKALLDAVGGL 241569 LSPTA +ENE TEYWI+++MPGLDVG P + R L GKIK+V+WLTAI K +LD VGG+ Sbjct: 181 LSPTAPHENEATEYWIAQIMPGLDVGDPGSTSARDLKGKIKSVNWLTAIGKPMLDTVGGV 240 Query: 241568 SALRSELPPDWFAMGDYGAGIVIRAGLLPDSGASDAEDQPPILPPAYLVLDQALRAIRAS 241389 AL SELPP+WFA+GDYGAG+++RAG+LP+SG S+ E+QPP LPP Y+VLD+ALR +RA Sbjct: 241 RALTSELPPNWFAIGDYGAGVIVRAGVLPESGLSEREEQPPFLPPTYVVLDKALRRVRAE 300 Query: 241388 SLDALQHGTVNGGAPTYNTAASTGEWLRRFEVSDDELLRAKAAVLDTPKLPAENAIPN 241215 S+D LQ GTVN GAP YNT ST WLRRFEV DDELL AKAA+L TP+LP + +IP+ Sbjct: 301 SMDILQRGTVNAGAPVYNTRESTAAWLRRFEVGDDELLSAKAAILKTPRLP-KGSIPS 357 >ref|NP_945061.1|gp30 Length = 363 Score = 507 bits (1305), Expect = e-142 Identities = 241/358 (67%), Positives = 294/358 (82%) Frame = -2 Query: 242288 MDKNFINWAKANQDQALIANGLLEPRYATGGIGAAFVVRAALYFERAYDAGVRAAIAECF 242109 MD+NF+ WAKANQ +AL+ NGLLEPRYATGGIGAA VVRA+LYFERA+D VRAA+A+CF Sbjct: 1 MDQNFLEWAKANQGKALVPNGLLEPRYATGGIGAAVVVRASLYFERAFDPAVRAAVADCF 60 Query: 242108 DEFAKCAPDKLTFVWHNGKAAQAFKKAKPMQALAASLSPEDRFDFAYVGGKDATDASLYQ 241929 D++ KLTF+W NGKAAQ F +AKP++A A+ L PEDRFDF YVGG+ A+DAS ++ Sbjct: 61 DDYCAVPECKLTFLWSNGKAAQPFARAKPLRAAASKLGPEDRFDFCYVGGEQASDASFWR 120 Query: 241928 FTITGLRQRQEKAGNRGLNALSFSMPLVDVQENPDAFVRLFFDAAKRLNAVHGHAGFAVN 241749 F + G RQ QEK GNRGLN+L+FS P+V VQENPDAF +LFFDAA+RL+AV G AGFAVN Sbjct: 121 FEVVGQRQWQEKMGNRGLNSLAFSWPVVAVQENPDAFAKLFFDAARRLDAVQGQAGFAVN 180 Query: 241748 LSPTAVNENEPTEYWISRMMPGLDVGSPSDLATRQLSGKIKTVDWLTAIDKALLDAVGGL 241569 LSPTA +ENE TEYWI+++MPGLDVG P + R L GKIK+V+WLTAI K +LD VGG+ Sbjct: 181 LSPTAPHENEATEYWIAQIMPGLDVGDPGSTSARDLKGKIKSVNWLTAIGKPMLDTVGGV 240 Query: 241568 SALRSELPPDWFAMGDYGAGIVIRAGLLPDSGASDAEDQPPILPPAYLVLDQALRAIRAS 241389 AL SELPP+WFA+GDYGAG+++RAG+LP+SG S+ E+QPP LPP Y+VLD+ALR +RA Sbjct: 241 RALTSELPPNWFAIGDYGAGVIVRAGVLPESGLSEREEQPPFLPPTYVVLDKALRRVRAE 300 Query: 241388 SLDALQHGTVNGGAPTYNTAASTGEWLRRFEVSDDELLRAKAAVLDTPKLPAENAIPN 241215 S+D LQ GTVN GAP YNT ST WLRRFEV DDELL AKAA+L TP+LP + +IP+ Sbjct: 301 SMDILQRGTVNAGAPVYNTRESTAAWLRRFEVGDDELLSAKAAILKTPRLP-KGSIPS 357 >ref|NP_945090.1|gp59 Length = 429 Score = 304 bits (778), Expect = 3e-81 Identities = 160/396 (40%), Positives = 227/396 (57%) Frame = -3 Query: 143587 IGNALEWYDFTVFGLMTVVIAELFFPTSSEYASLLLTTATFGVAFFMRPVGGIVLGLYAD 143408 +GN EW+DF + +V+IA+LFFP++ + SLLL+ +T GV FFMRP+GGIV+G AD Sbjct: 28 VGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLLSVSTIGVGFFMRPIGGIVIGGIAD 87 Query: 143407 RAGRKAALSLVMLLMTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFSAGGEFGSATAL 143228 + GR+AAL++ + LMTAG GFSAGGE G ATA Sbjct: 88 KVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGGEMGGATAY 147 Query: 143227 LIEAAPFSKRGFYGSWQMASQXXXXXXXXXXXXXVTRGLSHDALHSWGWRVPFVLGLVIG 143048 L E P + G+Y SW AS + + L + SWGWR+PF+LGL +G Sbjct: 148 LRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWRIPFLLGLGLG 207 Query: 143047 PIGFYIRRHLDDSEAFLHAQQSARRATLGEVFTRHPREVLCGLGSVIALTVTIYVLIIYL 142868 P+G YIR L+D F ++ A + EV RE L G G V+ TV YVL+ Y+ Sbjct: 208 PVGIYIRSRLNDP-GFPADERLGECAPVVEVVRSFSREALVGFGLVVFWTVCSYVLLFYI 266 Query: 142867 PTFAVKQLKLPYAQSFYAVIIGNLLLMVLSPIAGAWSDRIGRKGXXXXXXXXXXXLMYPL 142688 PT+A K LKLP + F AV++G +++ ++P+ G SD GR+ YPL Sbjct: 267 PTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLFGRRWFLAGALLVAIVAAYPL 326 Query: 142687 FVWLDGAPSIGRLIVVHAVLAVTLAGYYGPFGAMIAELFPANVRSTGLSIAYNIAVMMFG 142508 F L+ AP + L+V V + +A Y GP A ++++FP V STG+SI+YN+AV+ FG Sbjct: 327 FAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFPDGVLSTGISISYNLAVITFG 386 Query: 142507 GFGQFIVTWLIKTTGSPLAPTYYVMAGLALSIVAVA 142400 GF I+TW I TT + LAP +YV+A +S+++V+ Sbjct: 387 GFSAAIITWAIATTHNNLAPAFYVIAAAIVSLISVS 422 >ref|NP_536386.1|conserved hypothetical protein Length = 244 Score = 271 bits (692), Expect = 3e-71 Identities = 137/234 (58%), Positives = 162/234 (69%), Gaps = 4/234 (1%) Frame = -1 Query: 243114 MSG--FGSTNAXXXXXXXXXXXPVRLKPLSLDPTDKKVICKAVCVCNRSPDQSASAANLK 242941 MSG +G+ + PVRL+P + DP DKKVICKAVCVC+R PD AS +LK Sbjct: 1 MSGRAYGANSGQGGMSPKGETTPVRLRPATPDPVDKKVICKAVCVCSREPDTGASGQSLK 60 Query: 242940 QQCVSRNLRDLDASMGWKSPYKAEVNYNMDNTPPTPVMRSATPLEPHPYLPGWLQKYWPG 242761 QQCVSRNLRD+D SMGWKSPYK+EVNY+M PP+P+MRSA+PLEPHPYLPGW+QKYWPG Sbjct: 61 QQCVSRNLRDVDRSMGWKSPYKSEVNYDMTQIPPSPIMRSASPLEPHPYLPGWIQKYWPG 120 Query: 242760 GLEEYP--RGTMRRPDVVIVNDPSLPPTQDNIKNVVEIKFXXXXXXXXXXXDFRLIAGSR 242587 G + YP G +RRPDVVIV D SLPPTQDNIK+VVEIKF D+ IAGS Sbjct: 121 GKDAYPARAGAVRRPDVVIVKDGSLPPTQDNIKSVVEIKFPPQERDREQEDDYARIAGSP 180 Query: 242586 EKLEVMGPQXXXXXXXXXDESPVRVAAEKLSELGRALRNLIGKGPPQIPGFGGL 242425 EK+ MGP +ESP+R +E LSELGR+LR L+ + P P GGL Sbjct: 181 EKVATMGPGDCDCSDDDANESPLRAVSEALSELGRSLRQLLNRSPASPPSMGGL 234 >ref|NP_945060.1|gp29 Length = 244 Score = 271 bits (692), Expect = 3e-71 Identities = 137/234 (58%), Positives = 162/234 (69%), Gaps = 4/234 (1%) Frame = -1 Query: 243114 MSG--FGSTNAXXXXXXXXXXXPVRLKPLSLDPTDKKVICKAVCVCNRSPDQSASAANLK 242941 MSG +G+ + PVRL+P + DP DKKVICKAVCVC+R PD AS +LK Sbjct: 1 MSGRAYGANSGQGGMSPKGETTPVRLRPATPDPVDKKVICKAVCVCSREPDTGASGQSLK 60 Query: 242940 QQCVSRNLRDLDASMGWKSPYKAEVNYNMDNTPPTPVMRSATPLEPHPYLPGWLQKYWPG 242761 QQCVSRNLRD+D SMGWKSPYK+EVNY+M PP+P+MRSA+PLEPHPYLPGW+QKYWPG Sbjct: 61 QQCVSRNLRDVDRSMGWKSPYKSEVNYDMTQIPPSPIMRSASPLEPHPYLPGWIQKYWPG 120 Query: 242760 GLEEYP--RGTMRRPDVVIVNDPSLPPTQDNIKNVVEIKFXXXXXXXXXXXDFRLIAGSR 242587 G + YP G +RRPDVVIV D SLPPTQDNIK+VVEIKF D+ IAGS Sbjct: 121 GKDAYPARAGAVRRPDVVIVKDGSLPPTQDNIKSVVEIKFPPQERDREQEDDYARIAGSP 180 Query: 242586 EKLEVMGPQXXXXXXXXXDESPVRVAAEKLSELGRALRNLIGKGPPQIPGFGGL 242425 EK+ MGP +ESP+R +E LSELGR+LR L+ + P P GGL Sbjct: 181 EKVATMGPGDCDCSDDDANESPLRAVSEALSELGRSLRQLLNRSPASPPSMGGL 234 >ref|NP_818250.1|gp199 Length = 1131 Score = 212 bits (539), Expect = 1e-53 Identities = 223/861 (25%), Positives = 367/861 (42%), Gaps = 110/861 (12%) Frame = +1 Query: 232867 TFLRGASHAEELVARAAQLGYQALAIADECSMAGIVRAHVAAKEAELPLIVGS--RFRLV 233040 + L G S EE+ ARA + G +++AI D + G R A + A + ++G+ R+ L Sbjct: 15 SILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGAEQRWMLN 74 Query: 233041 TADGKLAVS-------LIALAQNREGYGNLCELITLARTREGVEKGSYRLTPRDLDHPEA 233199 AD + + ++ LA+N G NL L +LA E K LD P Sbjct: 75 IADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKP------QLD-PGL 127 Query: 233200 PFEHLRGL---PDCLVIVEAEYGAADERLIAQADWARTVFPGRAWLGLCLLHRSRDDEHE 233370 ++ GL C++ A+Y D+ +A+ +W LLH D + Sbjct: 128 LMQYRDGLWASDGCMLTRFADYVVNDQEDLARQEWG------------VLLHIFGDHFYS 175 Query: 233371 DAVRWA--------------------------ARETGLRMVALGGV----EMHVRSRKPL 233460 + W A+E G+ +V + E + + + Sbjct: 176 ELHTWQFINPVSPEQQALNARMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAI 235 Query: 233461 HDALTAVRLGKPIAECGF--DLAPNAERCLRSRLRLANLYS---REALDETVRIAELCDF 233625 D T E G D NA+ +R + L + + EA+ + IA+ C+ Sbjct: 236 WDMSTGSWKKDQHEERGHAADWMMNADE-IRHYMGLHGVGTSVIEEAMRNSGWIADQCNA 294 Query: 233626 SLDELRYEYPSEVIPEGETPASYLRKETYLGAQRRFPQGVPT-VVQSQIEHELDLIAAMR 233802 +D P + E A++ R + +G+P V + ++E+E LI Sbjct: 295 EIDGKLLAMPRLHATDAEDAAAFRRAIEEGFKRFVVDKGLPEDVYRQRLEYEAKLIIDKN 354 Query: 233803 YESYFLTVYDIVRFARS-------------QHILC-QGRGSAANSAVCYCLGITEVDPER 233940 YF V D V AR+ + LC GRGSA S V Y +GIT +DP + Sbjct: 355 MAGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIK 414 Query: 233941 GNLLFERFISKERGEPPDIDVDFEHQRREEVVQYIYRKYGRHRAALAAAVISYRSRSALR 234120 +L+FERFI+ +R + PDIDVDF+ ++ V QY+ ++YG + R R L+ Sbjct: 415 YDLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQ 474 Query: 234121 DMGKALGVDLG-------LVEQVARAHHWWDNAK--------DLAERFTEAG--LAPESP 234249 D+ +A G+ G LVEQV + + + + E E G LAP + Sbjct: 475 DLCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAK 534 Query: 234250 IAKQWANLAHALRGFPRHLSQHVGGFVISHSKL-SRLVPIERASMEGRSVIEWDKDDLEA 234426 NL + R + H G +++ + L+P R ++D +LE Sbjct: 535 KYPDLFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELEE 594 Query: 234427 LGLLKVDVLALGMLSAIRRALDFVSEGTGEPFEMQ----DIPK--------------EDP 234552 LG +K D+LA L + A D + E G + IP+ DP Sbjct: 595 LGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVITLNEERYLNDP 654 Query: 234553 ETYAMISKADTVGVFQIESRAQMTMLPRLKPERFYDLVIEISLIRPGPIQ-GGMVHPYLR 234729 Y I + T G+FQ+ + A + R +P D+ S+ RPG + G++ Y+ Sbjct: 655 AIYDQIDRGQTAGLFQVNTPAGTKLAMRFRPRSVVDMADLASINRPGVTRVPGLLDKYIE 714 Query: 234730 RRQGIEPVSYPSPEME-----AALSRTLGVPIFQEQVMQVAMLAAGFTPGEADQLRRSMA 234894 RR G E V+Y P ME ++ T G+ ++QEQ+++ A AGFTPGEA++LR+ + Sbjct: 715 RRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGIG 774 Query: 234895 AWKRKGGLGQYYDRILDG------MTSRGYTVEFAESIFKQIEGFGEYGFPESHAASFAV 235056 K+ + + + LDG ++G T + A+ I++ ++ G Y F +SH +A+ Sbjct: 775 K-KKMEIINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYAL 833 Query: 235057 LVYASSWLKRHHPAAFLAALL 235119 +W+K ++ F+ L Sbjct: 834 QPCQEAWVKHYYFDEFITGCL 854 >ref|NP_536385.1|conserved hypothetical protein Length = 186 Score = 187 bits (475), Expect = 4e-46 Identities = 94/169 (55%), Positives = 112/169 (66%), Gaps = 6/169 (3%) Frame = -2 Query: 243659 AFIVEGDTTSHGGRVLGCEATMNIDGKKIARLGDMVSCPRCGGVYPIVSSKNPGFNVLG- 243483 AFI EGDTT+HGGRV+GC + G+ IA LGDMV+CPRCGG+YPIVS K G Sbjct: 4 AFICEGDTTTHGGRVVGCNVANTVHGRAIALLGDMVTCPRCGGIYPIVSVKRELNMTFGD 63 Query: 243482 RAAAFEGDKTACGASLISSQTLAHARVPMGSGGAGGL-----TAEHEATANQTGSYRGRF 243318 R A +GDKTACGA+LI+SQ A G+ G + + YRGRF Sbjct: 64 RPIATDGDKTACGATLIASQGFATVAPTSGTAGGNSIGGGKSVVPQSMSRGPDNLYRGRF 123 Query: 243317 QVLDETTGKPVANHPYSLQTADGQTLSGTTDAGGYTQWHEASSPASLHF 243171 QV DETTG+P+ANHPY LQTADG+T+SG TDA GYTQWHEA++ SL F Sbjct: 124 QVFDETTGEPIANHPYVLQTADGRTISGQTDADGYTQWHEANTAGSLQF 172 >ref|NP_945059.1|gp28 Length = 186 Score = 187 bits (475), Expect = 4e-46 Identities = 94/169 (55%), Positives = 112/169 (66%), Gaps = 6/169 (3%) Frame = -2 Query: 243659 AFIVEGDTTSHGGRVLGCEATMNIDGKKIARLGDMVSCPRCGGVYPIVSSKNPGFNVLG- 243483 AFI EGDTT+HGGRV+GC + G+ IA LGDMV+CPRCGG+YPIVS K G Sbjct: 4 AFICEGDTTTHGGRVVGCNVANTVHGRAIALLGDMVTCPRCGGIYPIVSVKRELNMTFGD 63 Query: 243482 RAAAFEGDKTACGASLISSQTLAHARVPMGSGGAGGL-----TAEHEATANQTGSYRGRF 243318 R A +GDKTACGA+LI+SQ A G+ G + + YRGRF Sbjct: 64 RPIATDGDKTACGATLIASQGFATVAPTSGTAGGNSIGGGKSVVPQSMSRGPDNLYRGRF 123 Query: 243317 QVLDETTGKPVANHPYSLQTADGQTLSGTTDAGGYTQWHEASSPASLHF 243171 QV DETTG+P+ANHPY LQTADG+T+SG TDA GYTQWHEA++ SL F Sbjct: 124 QVFDETTGEPIANHPYVLQTADGRTISGQTDADGYTQWHEANTAGSLQF 172 >ref|NP_818618.1|gp80 Length = 1111 Score = 148 bits (373), Expect = 2e-34 Identities = 209/854 (24%), Positives = 340/854 (39%), Gaps = 92/854 (10%) Frame = +1 Query: 232906 ARAAQLGYQALAIADECSMAGIVRAHVAAKEAELPLIVGSR--FRLVTADGKLA--VSLI 233073 ARA +LG AL ++ ++ + KE + I G F V + K L Sbjct: 26 ARAEELGMWALGTSNHGNVNDHAQFERECKERGIKPIFGCEIYFSPVGEEDKTRRKTHLT 85 Query: 233074 ALAQNREGYGNLCELITLARTREGVEKGSYRLTPRDLDHPEAPFEHLRGLPDCL------ 233235 A N GY NL +IT + +Y+ ++ EA E + L C Sbjct: 86 IFAMNEIGYRNLNRIITQSYV------DAYQWPTVSWENLEANHEGILVLSGCADSLLSC 139 Query: 233236 VIVEAEYGAADERLIAQADWART---------VFPGRAWLGLCLL-HRSRDDEHEDAVRW 233385 ++ +Y + D VF R L + H R A+ Sbjct: 140 TLLGGKYLGEQRSHVTDDDMDNARRQIQRYLDVFGNRFALEVQRFPHYDRTRALNPAIAE 199 Query: 233386 AARETGLRMVALGGVEMHVRSRKPLHDALTAVRLGKP---IAECGFDLAPN-----AERC 233541 +R+TG+ +VA V + L L A R AE ++ + N +++ Sbjct: 200 LSRDTGVPLVATADVHYPFPEQNKLQALLHAARWKSSPDFAAEASWEHSANLTYPLSDKE 259 Query: 233542 LRSRLRLANLYSREA---LDETVRIAELCDFSLDE---LRYEYPSEVIPEGETPASYLRK 233703 + L L S +A + T +AE C L + LR+ V +G T L + Sbjct: 260 IHDDLVATGLDSADAWKAIQYTSILAERCTVELPKAKPLRF-----VCDKGLTAKQQLSR 314 Query: 233704 ETYLGAQRRFPQGVPTVVQ------SQIEHELDLIAAMRYESYFLTVYDIVRFARSQHI- 233862 E G + R Q P + + ++++E +I + YFL + D+VR A+ + I Sbjct: 315 EIAKGWKYRVAQR-PDMARRKAEYVKRLQYEFKIITDKDFGDYFLVISDLVRRAKDKSID 373 Query: 233863 LCQGRGSAANSAVCYCLGITEVDPER---GNLLFERFISKERGEPPDIDVDFEHQRREEV 234033 + RGSAA S + Y L ITE+DP ++FERFI R + PDID+DF+ ++R E+ Sbjct: 374 VGPARGSAAASLISYLLRITEIDPLHPLFNKMVFERFIDPFRSDYPDIDLDFDDEKRWEI 433 Query: 234034 VQYIYRKYGRHRAALAAAVISYRSRSALRDMGKALGVDLGLVEQVARA--------HHWW 234189 YG A A Y ++ L+D+ +A + L + +A+ Sbjct: 434 ELDAKNLYGPENVASVANNTGYHGKNTLKDVARAYKLPLETFKAIAKRTTVRVETDDKRN 493 Query: 234190 DNAKDLAERFTE----AGL--APESPIAKQWANLAHALRGFPRHLSQHVGGFVISHSKLS 234351 D+ D+ E + AGL A +A A + G S H GFVI+ + Sbjct: 494 DSISDVLESYATHPEIAGLIEAHADKLAMAVALESGNGDGNLHSSSVHACGFVIASDPIP 553 Query: 234352 RLVPI---ERASMEGRS---VIEWDKDDLEALGLLKVDVLALGMLSAI-------RRALD 234492 + I ++ S ++ VI +DK D E+LG+LKVD L + AI R L+ Sbjct: 554 DVCAIYLKDKGSGSKKTKVQVIPYDKRDAESLGMLKVDFLGSATMGAIGLMRKWSRVELE 613 Query: 234493 FVSEGTGEPFE----MQDIPKED------------PETYAMISKADTVGVFQIESRAQMT 234624 + + ++ +Q KE D VG+ Q E Sbjct: 614 ELYLSIYKDYDRWIRVQKRIKESGGKRVGFTANRFDNILKRFRNDDVVGIMQFEGGTTRQ 673 Query: 234625 MLPRLKPERFYDLVIEISLIRPGPIQGGMVHPYLRRRQGIEPVSYPSPE-MEAALSRTLG 234801 + ++P F +L +L RPGP GG Y+ + G + + P+ + ++ T G Sbjct: 674 VCRNVQPVDFDELAACTALSRPGPYYGGQYTDYVAVKNGEKDWARIHPKGFDRHVAFTFG 733 Query: 234802 VPIFQEQVMQVAMLAAGFTPGEADQLRRSMAAWKRKGGLGQYYDRILDGMTSR-GYTVEF 234978 ++QEQ+M + AGF E ++R+ + + +DG G + Sbjct: 734 QIVYQEQIMWILRDLAGFDNAEVLRVRKIIGKKLGEFQFEAIKQAFIDGCAQTCGVDPDT 793 Query: 234979 AESIFKQIEGFGEYGFPESHAASFAVLVYASSWLKRHHPAAFLAALLNSQPMG---FYSP 235149 A +F I Y F +HA S+A++ Y K H F A+ L G Sbjct: 794 ALRVFGAIRTAAGYAFNIAHAYSYALIAYWQMGFKMDHTTEFFASTLYKNGDGKKEIPRR 853 Query: 235150 SALVQDARRHGVRV 235191 +A++QDA H + + Sbjct: 854 TAVLQDAEAHRIGI 867 >ref|NP_944186.1|hypothetical protein Length = 347 Score = 147 bits (370), Expect = 6e-34 Identities = 84/188 (44%), Positives = 116/188 (61%), Gaps = 1/188 (0%) Frame = -2 Query: 126824 MNIYAVGGAIRDALLGVPVQDRDYVVVGATPEQMAAQGFRPVGKDFPVFLHPDTQEEYAL 126645 MNIY VGGA+RD ++ +DRDYVVVG+T ++M A+G++ VG DFPV+L +EYAL Sbjct: 1 MNIYLVGGAVRDMVMNREPKDRDYVVVGSTHDEMIAKGYKQVGADFPVYL-DHLGQEYAL 59 Query: 126644 ARTERKTAAGYHGFQFYYAPDVTLDEDLARRDLTINAMAREVSPDGTLIGPVIDPFDGQA 126465 ARTER T GY+ F + P+VTL++DL RRD T+NAMA ++ G VIDP++GQ Sbjct: 60 ARTERSTGKGYNDFVTDFNPNVTLEQDLKRRDFTMNAMALGMN------GVVIDPYNGQQ 113 Query: 126464 DLRARVFRHVS-DAFVEDPVXXXXXXXXXXXXADFTVADETLALMRRMVDAGEADALVPE 126288 D++ RV V+ AF EDPV DF ++ T+ + R + G D L E Sbjct: 114 DIKERVVNVVNPQAFHEDPV-RVLRACRFAARYDFRLSTLTMECILRCIKDGRMDHLTSE 172 Query: 126287 RVWQEIAR 126264 R+W E + Sbjct: 173 RIWLEFEK 180 >ref|NP_945089.1|gp58 Length = 297 Score = 113 bits (283), Expect = 7e-24 Identities = 89/293 (30%), Positives = 132/293 (45%), Gaps = 11/293 (3%) Frame = +1 Query: 105331 LPPFSALRAFEAAARHESFSAAGDELHVTHGAISRQITGFEAWLGKPVFQRYGKRVKLTD 105510 LPP L F+AAARH +F+ A +EL+V GA+S+Q+ E +LG +F R K + LT Sbjct: 6 LPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTR 65 Query: 105511 DGRRYLDTVRAAFDSIALATEQLRNAGATRVLRINALPTFAMKWLLPRLSRFQRDVPNVE 105690 G++Y D V A AT + L I A +L R++ F + P V Sbjct: 66 AGQQYADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVS 125 Query: 105691 LKLSTSNAALD-TLDGFDVA---IRREPGPGPNWRSGHFLDESVIPVCSPALL--KRAPI 105852 +++ + FD+ IR P PG + + E V C+P L +R P Sbjct: 126 VRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTA--IVAEDVHAYCAPTFLAGRRVP- 182 Query: 105853 ARVEDLARHVLLHSDTRPE---GWRDWF--AAAGVTMKGRKRQSFDHFYLALQAAVDGLG 106017 +DL LL ++ + GWRDWF + + + S + + + LQ A+ G G Sbjct: 183 --PQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHG 240 Query: 106018 VALGPLPLIDDELASGRLVMPLDGPRIATRSYWWIAPGASADDPLVAQFCAWL 106176 LG +I + SG+LV+ D +Y I P D P V F WL Sbjct: 241 AILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWL 293 Score = 53.1 bits (126), Expect = 1e-05 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 4/168 (2%) Frame = -3 Query: 62083 GSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYYERLVQALSEL 61904 G+F AAE + ++ SK V+ LE LG L R + + T AG++Y +R+ L++ Sbjct: 22 GNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHAILADC 81 Query: 61903 DEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVTVDMTLSDRVVDLIE 61724 EA A+ P L + S + + +++ P+V+V + + + V +L Sbjct: 82 VEA-TALVMKEQTPHS-LTIACASGTATLFLADRIAEFSAEHPEVSVRILVREGVFNLNA 139 Query: 61723 EGYDVAV----RAAPNGLKSSSLVARQIATAHILLVASPDYLERRGTP 61592 +D+ V P G+ +++VA + +P +L R P Sbjct: 140 AEFDIGVYYIRDVPPPGIAGTAIVAEDVHA-----YCAPTFLAGRRVP 182 Score = 38.5 bits (88), Expect = 0.28 Identities = 32/130 (24%), Positives = 51/130 (39%) Frame = -1 Query: 44121 GSFTKXXXXXXXXXXXXXAQIRKLEEQAGTPLFVKAGRGLALTDAGDAMLRYARRMIELN 43942 G+FT+ Q+ KLE GT LFV+ + L LT AG ++ Sbjct: 22 GNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHAILADC 81 Query: 43941 DEAAAAVRGVNLDGWVRVGLQEDFGEAILPDVLGRFARAHPKVRIEARVARNAELLERLD 43762 EA A V + + L D + F+ HP+V + V E + L+ Sbjct: 82 VEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILV---REGVFNLN 138 Query: 43761 ANQLDLALVW 43732 A + D+ + + Sbjct: 139 AAEFDIGVYY 148 >ref|NP_046685.1|putative DNA polymerase Length = 1305 Score = 97.8 bits (242), Expect = 4e-19 Identities = 101/407 (24%), Positives = 178/407 (43%), Gaps = 42/407 (10%) Frame = +1 Query: 233809 SYFLTVYDIVRF-----ARSQHILCQGRGSAANSAVCYCLGITEVDPERGNLLFERFISK 233973 SY++TV +I+ ++ RGSAA V Y L T+++P + +L R I K Sbjct: 402 SYYITVREIINIIWDDECGGDSLVGAARGSAAGYLVNYLLDNTQINPMQYDLPHWRHIHK 461 Query: 233974 ERGEPPDIDVDFEHQRREEVVQYIYRKYGRHRAALAAAVISYRSRSALRDMGKALGVDLG 234153 R + PDID+D E +R+++++ + ++G R A + S+SAL+ + LG+D Sbjct: 462 SRPDLPDIDIDTEGSKRQKILKALRERFGDKRVLQIATFGTEGSKSALQTACRGLGIDND 521 Query: 234154 LVEQVA------RAHHWWDNAKDLAERFTEAGLAPESPI---AKQWANL---AHALRGFP 234297 + + ++ R +W K E G P +Q+ NL A + G Sbjct: 522 ISQYLSGMIPFERGSNW--PLKHCFYGDKETGRKPIKEFIREVEQYPNLKETALKIEGLT 579 Query: 234298 RHLSQHVGGFVISHSKLSRLVPIERASMEGRSVIEWDKDDLEALGLLKVDVLALGMLSAI 234477 S H G +I + + ++ + + + +G + +++ D EA+G +K D+L + L I Sbjct: 580 NKRSSHAAGVIIFNDEYTKSNAMMK-TPKGAYITQFNMGDSEAMGSVKFDLLTIEALDKI 638 Query: 234478 RRALDFVSEGT------------GEPFEMQDIPKEDPETYAMISKADTVGVFQIESRAQM 234621 R LD + E + I ED + + M + + +FQ + Sbjct: 639 RVTLDQLIENNEIEWQGSLKETYNKYIHPDVIEYEDDKLWEMAGNGEIMDLFQFSTEVGH 698 Query: 234622 TMLPRLKPERFYDLVIEISLIR-PGPIQGGMVHPYLRRRQGI-----EPVSYPSPE---- 234771 + ++KP+ + + SL+R + V Y++ + + E Y E Sbjct: 699 QSVVKVKPKNLLEAAVTNSLMRLMSDGEEQPVDTYVKYKNNLNKWYEEMTRYGLSEKEIR 758 Query: 234772 -MEAALSRTLGVPIFQEQVMQVAM--LAAGFTPGEADQLRRSMAAWK 234903 ME L GV QE VMQ+ M A F E++ LR+S+A K Sbjct: 759 VMERHLKDIYGVADTQEVVMQMVMDKDIANFDIKESNYLRKSIAKKK 805 >ref|NP_943772.1|predicted amidase Length = 250 Score = 86.7 bits (213), Expect = 9e-16 Identities = 57/130 (43%), Positives = 75/130 (57%) Frame = -2 Query: 112547 TGIPARFIVGQAALESGWGKREIRASDGSTSYNVFGIKANKGWTGRTVAALTTEYVNGTP 112368 TGIPA I+GQ ES + S N+FGIK G G T + EY G Sbjct: 19 TGIPASIILGQMVFESSGSNPGGMSGLAYNSKNLFGIKG-VGPAG-TTTVWSMEYDKGGG 76 Query: 112367 RRVVAKFRAYDSYEHAMTDYASLLKNNPRYAGVLSASRSVEGFAHGMQKAGYATDPHYAK 112188 R V+ FR Y+SY +M D+A LL+ PRYA L +++ E FA G++ GYATDP+YA Sbjct: 77 R--VSGFRKYNSYYESMLDHARLLQT-PRYASQLQNAKTFEDFARGIKAGGYATDPNYAG 133 Query: 112187 KLISIMQQIG 112158 +LISI++Q G Sbjct: 134 QLISIIKQNG 143 >ref|NP_817764.1|gp3 Length = 235 Score = 84.7 bits (208), Expect = 3e-15 Identities = 72/226 (31%), Positives = 99/226 (43%), Gaps = 6/226 (2%) Frame = -3 Query: 218422 LVLFSGGQDSATCVAWALER--YQTVETLGFDYGQRHRVELECREGVRDALKHRFPAWAG 218249 LVL SGG DS+T +AWAL+R L DYGQRH VE R + +H AW+ Sbjct: 8 LVLLSGGMDSSTLLAWALDRPDVDQASALFVDYGQRHVVE---RASSQLVAQHYGAAWSE 64 Query: 218248 RLGDDHMIDLSVLGAISDTAMT----RTIEIETAANGLPNTFVPGRNLLFMTIAAAIAYR 218081 +DL GA ++A+T A + + T VP RN ++ AA IA Sbjct: 65 -------LDLRAFGASVNSALTVMAREVPHGHYAEDNMVQTVVPNRNATLISAAAGIAAS 117 Query: 218080 RGLRVLVGGMCETDFSGYPDCRDDTMKALQVALNLGMDTRVVLETPLMWLDKAQTWQLAE 217901 G ++ + D + YPDCR + + A+ +A G VV P DKA +L Sbjct: 118 LGHDAVLTAVHVGDHAVYPDCRPEFVAAIDMATFAGCGVHVV--APFQTGDKADIARLGG 175 Query: 217900 QLGGAALVELIRVETHTCYVGERAELHDWGFGCGECPACKLRKRGY 217763 QLG + T +CY G + CG C C R + Sbjct: 176 QLGVPYHL------TWSCYEGGLNDARH----CGRCGTCVERAEAF 211 >ref|NP_795485.1|putative cell wall hydrolase Length = 402 Score = 81.6 bits (200), Expect = 3e-14 Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 1/146 (0%) Frame = -2 Query: 112592 FVDRLXXXXXXXXXATGIPARFIVGQAALESGWGKREIRASDGSTSYNVFGIKANKGWTG 112413 F+D++ I QA LESGWGK + +FGIKA+ WTG Sbjct: 3 FLDKIKQGCLDGWAKYKILPSLTAAQAILESGWGKHAPHNA-------LFGIKADSSWTG 55 Query: 112412 RTVAALTTE-YVNGTPRRVVAKFRAYDSYEHAMTDYASLLKNNPRYAGVLSASRSVEGFA 112236 ++ T E Y G +V +FRAYDS+ ++ D+ L +NPRY V+ + + Sbjct: 56 KSFDTKTQEEYQAGVVTDIVDRFRAYDSWTDSIIDHGKFLNDNPRYKAVVGET-DYKKAC 114 Query: 112235 HGMQKAGYATDPHYAKKLISIMQQIG 112158 H ++ AGYAT YA+ LI I+++ G Sbjct: 115 HAIKDAGYATASGYAELLIQIIKENG 140 >ref|NP_795423.1|putative cell wall amidase Length = 402 Score = 81.6 bits (200), Expect = 3e-14 Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 1/146 (0%) Frame = -2 Query: 112592 FVDRLXXXXXXXXXATGIPARFIVGQAALESGWGKREIRASDGSTSYNVFGIKANKGWTG 112413 F+D++ I QA LESGWGK + +FGIKA+ WTG Sbjct: 3 FLDKIKQGCLDGWAKYKILPSLTAAQAILESGWGKHAPHNA-------LFGIKADSSWTG 55 Query: 112412 RTVAALTTE-YVNGTPRRVVAKFRAYDSYEHAMTDYASLLKNNPRYAGVLSASRSVEGFA 112236 ++ T E Y G +V +FRAYDS+ ++ D+ L +NPRY V+ + + Sbjct: 56 KSFDTKTQEEYQAGVVTDIVDRFRAYDSWTDSIIDHGKFLNDNPRYKAVVGET-DYKKAC 114 Query: 112235 HGMQKAGYATDPHYAKKLISIMQQIG 112158 H ++ AGYAT YA+ LI I+++ G Sbjct: 115 HAIKDAGYATASGYAELLIQIIKENG 140 >ref|NP_817502.1|gp53 Length = 293 Score = 81.3 bits (199), Expect = 4e-14 Identities = 79/297 (26%), Positives = 128/297 (43%), Gaps = 5/297 (1%) Frame = +2 Query: 180974 MLDDPIA----AYLSNLKHVRQLSEHTLRGYTHELDELKKLAAGRPLETLTATDXXXXXX 181141 M DD +A ++L L+ R+ +E T+R Y ++ L L Sbjct: 1 MTDDLLAELKDSWLMELRAARKSAE-TIRAYGGSVEGYLNFCVEGELAPLEKASLLAWVN 59 Query: 181142 XXXXXXLSARSISHRLSAWRAFYRWLALRIEMPANPVAAVRAPKRPKTLPKALSVDDASA 181321 L ++ RL+A + F RW+A + + + VR PK + + K LS A Sbjct: 60 SMAS--LQPATVHLRLTAVKQFMRWVADEEGVNVDGLLVVRPPKLDQKVVKHLSDRAVQA 117 Query: 181322 LMDAPLPDTTEGIRDHAILELFYSSGLRLAELVGLDAMYTQADGYRSAGWLDLAEAEVTV 181501 L+ +T RD A++ LF +G+R AE++ LD + L + ++TV Sbjct: 118 LVATCAGNTFRDRRDKALIVLFTETGIRAAEMLALDVED-----------VSLVDCQLTV 166 Query: 181502 R-GKGNKERKVPVGRKAIAALNAWLAVRGEFVKHDPHPLFLSVRGNRMAPGVVRERVKRA 181678 R GKG K R+V A ++ +L R PL++ + G R++ ++ +KR Sbjct: 167 RRGKGAKGRRVKYSPMCAATIDKYLRARRRAGHGSEGPLWIGL-GGRLSYTGMKSSLKRR 225 Query: 181679 ALSAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLA 181849 A AG+P HPH LRH+ A L++ G + G S Y + LA Sbjct: 226 ADDAGVP-GFHPHRLRHTSAVRWLKAGGSEAGLMAQAGWQSRRQIDRYIKSAAEELA 281 >ref|NP_438163.1|cell wall hydrolase Length = 400 Score = 75.9 bits (185), Expect = 2e-12 Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Frame = -2 Query: 112517 QAALESGWGKREIRASDGSTSYNVFGIKANKGWTGRTVAALTTE-YVNGTPRRVVAKFRA 112341 QA LESGWGK + +FGIKA+ WTG++ T E Y G +V +FRA Sbjct: 28 QAILESGWGKHAPHNA-------LFGIKADASWTGKSFDTKTQEEYQPGIVTDIVDRFRA 80 Query: 112340 YDSYEHAMTDYASLLKNNPRYAGVLSASRSVEGFAHGMQKAGYATDPHYAKKLISIMQQ 112164 YDS+ ++ D+ L +NPRY V+ + + + ++ AGYAT Y + LI ++++ Sbjct: 81 YDSWTDSIIDHGKFLNDNPRYKAVIGET-DYKKACYAIKAAGYATASSYVELLIQLIEE 138 >ref|NP_795599.1|putative cell wall hydrolase, lysin Length = 400 Score = 75.9 bits (185), Expect = 2e-12 Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Frame = -2 Query: 112517 QAALESGWGKREIRASDGSTSYNVFGIKANKGWTGRTVAALTTE-YVNGTPRRVVAKFRA 112341 QA LESGWGK + +FGIKA+ WTG++ T E Y G +V +FRA Sbjct: 28 QAILESGWGKHAPHNA-------LFGIKADASWTGKSFDTKTQEEYQPGIVTDIVDRFRA 80 Query: 112340 YDSYEHAMTDYASLLKNNPRYAGVLSASRSVEGFAHGMQKAGYATDPHYAKKLISIMQQ 112164 YDS+ ++ D+ L +NPRY V+ + + + ++ AGYAT Y + LI ++++ Sbjct: 81 YDSWTDSIIDHGKFLNDNPRYKAVIGET-DYKKACYAIKAAGYATASSYVELLIQLIEE 138 >ref|NP_690772.1|ORF39 Length = 310 Score = 73.9 bits (180), Expect = 6e-12 Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 1/125 (0%) Frame = -2 Query: 112535 ARFIVGQAALESGWGKREIRASDGSTSYNVFGIKANKGWTGRTVAALTTEYVN-GTPRRV 112359 A ++ Q LESG+G + +YN+FGIK + G+ V T+E G RV Sbjct: 25 ASLVIAQGCLESGFGTSGL----SKQAYNLFGIKGT--YNGKYVLMWTSEQDKYGNVERV 78 Query: 112358 VAKFRAYDSYEHAMTDYASLLKNNPRYAGVLSASRSVEGFAHGMQKAGYATDPHYAKKLI 112179 AKFR Y SY ++ D SL RY V+ + + +QKAGYATD +YA KLI Sbjct: 79 QAKFRKYPSYAESLADLGSLYNRLDRYKAVVGET-DYKKACRAVQKAGYATDINYANKLI 137 Query: 112178 SIMQQ 112164 ++++Q Sbjct: 138 TMIEQ 142 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 73.6 bits (179), Expect = 8e-12 Identities = 52/145 (35%), Positives = 67/145 (46%) Frame = -3 Query: 129163 YPSPYRDIVERYAQSTGLDVEWAYGLIRQESRFITNARSSVGAGGLMQLMPATAQLVAKK 128984 Y Y + A +D +I+QES F ARS VGA GLMQLMPAT AK Sbjct: 1418 YSGKYSSYINSAASKYNVDPALIAAVIQQESGFNAKARSGVGAMGLMQLMPAT----AKS 1473 Query: 128983 LGMGTITRAQMHDIDTNIQLGTWYLADIYNNFDSSPVLATAGYNAGPGRPRQWRQVLTRP 128804 LG+ +D N+ GT YLA F + A A YNAGPG ++ + Sbjct: 1474 LGVN-----NAYDPYQNVMGGTKYLAQQLEKFGGNVEKALAAYNAGPGNVIKYGGI---- 1524 Query: 128803 VEGAIFAETIPFNETREYVKNVLSN 128729 PF ET+ YVK +++N Sbjct: 1525 ---------PPFKETQNYVKKIMAN 1540 >ref|NP_899372.1|exsB protein Length = 238 Score = 70.5 bits (171), Expect = 7e-11 Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 13/227 (5%) Frame = -3 Query: 218416 LFSGGQDSATCVAWALERY--QTVETLGFDYGQRHRVELECREGVRDALKHRFPAWAGRL 218243 + SGG DS ++ + V L F YGQ+ +ELE + +L Sbjct: 6 VLSGGLDSTILTYKLVDEFGKDNVFALSFYYGQKQSIELE-----------KAKLTCQKL 54 Query: 218242 GDDH-MIDLSVLGAI----------SDTAMTRTIEIETAANGLPNTFVPGRNLLFMTIAA 218096 G +H +ID+S LG + SD AM TI+ + + P T VP RN+L TIA Sbjct: 55 GIEHRLIDISFLGEVVAPVCANIAGSDVAMP-TIQ-DVLGDPQPPTEVPYRNMLLNTIAF 112 Query: 218095 AIAYRRGLRVLVGGMCETDFSGYPDCRDDTMKALQVALNLGMDTRVVLETPLMWLDKAQT 217916 + A G + G+ D GY DC D + + L + L P + KA Sbjct: 113 SFAQANGCSAVFTGIQVHDAYGYWDCTQDFLDGMNKISALNRQHEITLHAPFAQMSKADE 172 Query: 217915 WQLAEQLGGAALVELIRVETHTCYVGERAELHDWGFGCGECPACKLR 217775 + +LG + ++ TCY + ++ G CG+CP+C R Sbjct: 173 IAIGVELG------VPFEDSLTCY-----DPNEAGESCGKCPSCAER 208 >ref|NP_046572.1|ABC transporter Length = 705 Score = 63.5 bits (153), Expect = 8e-09 Identities = 46/185 (24%), Positives = 94/185 (50%), Gaps = 4/185 (2%) Frame = -3 Query: 137083 VSFTLERGKTLAVVGESGCGKSTLARQLTMIETPTSGSLMIDGNDVAGAGRHTVADLRRR 136904 ++ L+R + ++GESG GKST A+ L+ + S+ ++G D+ R+ +R+R Sbjct: 502 INLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDI---NRYDHLSIRKR 558 Query: 136903 VQMVFQNPFASLNPRKTVEQTLAEPLEINANLSAAERAARIAQMMRTV-GLRPEHAKRYP 136727 + + +NPF + T+++ L + N E A ++Q + L +++ + Sbjct: 559 IVYIDENPFLF---KGTIKENLCMGEIFDQN--EIENACIMSQCHEFICNLDKQYSYKLS 613 Query: 136726 HM---FSGGQRQRVAIARAMILEPRIVVADEPVSALDVSIQAQILNLFMDLQEQFNTSYV 136556 S GQ+QR+A+ARA++ +P++++ DE +S +D L + + + + Sbjct: 614 ENGSNLSTGQKQRLALARAILHQPQVLILDESLSNID----PDNTKLIYETLHRMDCLII 669 Query: 136555 FISHN 136541 I+HN Sbjct: 670 LITHN 674 Score = 62.0 bits (149), Expect = 2e-08 Identities = 51/205 (24%), Positives = 103/205 (50%), Gaps = 9/205 (4%) Frame = +2 Query: 89567 VDNVNLTIAKNELFALLGSSGCGKSTLLRMLAGLETATSGKIFVDGEDLASLP--PYRRP 89740 V+++NL + + + ++G SG GKST + L+ L I+++G D+ R+ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 89741 VNMMFQSYALFPHMSVESNVAFGLKQEGTPKNEIKER--VADALALV-----QMSKYAKR 89899 + + ++ LF +++ N+ G E +NEI+ ++ + Q S Sbjct: 559 IVYIDENPFLFKG-TIKENLCMG---EIFDQNEIENACIMSQCHEFICNLDKQYSYKLSE 614 Query: 89900 KPHQLSGGQQQRVALARSLVKRPKLLLLDEPMSALDKKIRQKTQLELVNIIEKVDVTCVM 90079 LS GQ+QR+ALAR+++ +P++L+LDE +S +D T+L + + ++D ++ Sbjct: 615 NGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDP---DNTKL-IYETLHRMDCLIIL 670 Query: 90080 VTHDQEEAMTMASRLAVMSEGKIVQ 90154 +TH+ +L V +I++ Sbjct: 671 ITHNDPSNFKYNKKL-VFRNNRIIE 694 >ref|NP_665963.1|putative site specific recombinase Int2 Length = 199 Score = 59.3 bits (142), Expect = 2e-07 Identities = 61/190 (32%), Positives = 81/190 (42%), Gaps = 21/190 (11%) Frame = +2 Query: 181310 DASALMDAPLPDTTEGIRDHAILELFYSSGLRLAELVGLDAMYTQADGYRSAGWLDLAEA 181489 D M A + + + RD+AIL L Y +GLR AEL G+D D +L Sbjct: 13 DQVEAMRAAVLEGSHPERDNAILTLLYDTGLRRAELSGVDRAMLDVDD-------ELLRI 65 Query: 181490 EVTV-RGKGNKERKVPV--------GRKAIAALNAWLAVRGEFVKHDPHPLFLSVRGNRM 181642 + +G N P + IA LNA+L VR D LF S RM Sbjct: 66 PSRIQKGYPNDRDPRPATFELDRGENLRTIATLNAYLEVRD-----DVDALFPSQMSTRM 120 Query: 181643 APGVVRERVKRAALSAGI----------PANVHPHVLRHSFATHVL--QSSGDLRAVQEL 181786 +P V + VKRAA A I P +V H LRHS A +L ++ L V+ Sbjct: 121 SPKGVNDVVKRAARRADIRPFTFEGRGGPDDVSAHTLRHSLAWRMLRVETGNILYDVRNR 180 Query: 181787 LGHASVAATQ 181816 L H S+ T+ Sbjct: 181 LRHRSLQTTE 190 >ref|NP_061531.1|integrase Length = 369 Score = 58.9 bits (141), Expect = 2e-07 Identities = 80/302 (26%), Positives = 131/302 (43%), Gaps = 1/302 (0%) Frame = +2 Query: 181010 LKHVRQLSEHTLRGYTHELDELKKLAAGRPLETLTATDXXXXXXXXXXXXLSARSISHRL 181189 L+H RQ + + H + L++ AGR + L D S +I+ L Sbjct: 68 LQHARQ-HQRSYETTVHRIKPLREYFAGRVVNDLGGQDIRGYGAHRLDAGASPATINREL 126 Query: 181190 SAWRAFYRWLALRIEMPA-NPVAAVRAPKRPKTLPKALSVDDASALMDAPLPDTTEGIRD 181366 +A A +E NPV R + + + L+ + AL A + + Sbjct: 127 AALSAAINHCNTELEWALPNPVKG-RKMREAEGRDRWLTRAEVEALCRAARGQKFGPMLE 185 Query: 181367 HAILELFYSSGLRLAELVGLDAMYTQADGYRSAGWLDLAEAEVTVRGKGNKERKVPVGRK 181546 I L ++G R E++GL+ + + D A L EA T K K R +P+ Sbjct: 186 DFI-RLAVNTGCRREEMLGLE--WRRVD---FANRLIYLEASHT---KAGKRRSIPINEG 236 Query: 181547 AIAALNAWLAVRGEFVKHDPHPLFLSVRGNRMAPGVVRERVKRAALSAGIPANVHPHVLR 181726 A+AAL +A R E P +F G+R+ + K+A +A I A+ H LR Sbjct: 237 AMAALKRRMAFRSETSPECPW-VFARANGDRVIS--LSAGFKQACQAAKI-ADFTIHDLR 292 Query: 181727 HSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAKKRD*RAYR 181906 H+ A ++ + L V++LLGH++VA T+ Y L A++ D+ + R+ R R Sbjct: 293 HTCAAWLVSAGVPLADVRDLLGHSTVAMTERYAHL---APARVRDAVGVLDQVREGRISR 349 Query: 181907 SM 181912 S+ Sbjct: 350 SV 351 >ref|NP_878228.1|Int Length = 326 Score = 51.6 bits (122), Expect = 3e-05 Identities = 21/46 (45%), Positives = 32/46 (69%) Frame = +2 Query: 181694 IPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSL 181831 IP N H+LRH+FA+H + + G++ A+Q++LGHAS+ T Y L Sbjct: 261 IPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >ref|NP_839878.1|Int Length = 326 Score = 51.6 bits (122), Expect = 3e-05 Identities = 21/46 (45%), Positives = 32/46 (69%) Frame = +2 Query: 181694 IPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSL 181831 IP N H+LRH+FA+H + + G++ A+Q++LGHAS+ T Y L Sbjct: 261 IPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >ref|NP_536628.1|Int Length = 345 Score = 49.7 bits (117), Expect = 1e-04 Identities = 23/61 (37%), Positives = 32/61 (52%) Frame = +2 Query: 181664 RVKRAALSAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQH 181843 R + AL +P HVLRH+FATH + + GD+ +Q +LGH + T Y H Sbjct: 274 RYIKKALPDYVPEGQATHVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDH 333 Query: 181844 L 181846 L Sbjct: 334 L 334 >ref|NP_052278.1|Int Length = 336 Score = 48.9 bits (115), Expect = 2e-04 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 1/140 (0%) Frame = +2 Query: 181430 AMYTQADGYRSAGWLDLAEAEVTVRG-KGNKERKVPVGRKAIAALNAWLAVRGEFVKHDP 181606 A +++A+ R + LA+ ++T KG K R VP+ ++ +L Sbjct: 202 ARWSEAESLRKS---QLAKYKITYTNTKGRKNRTVPISKELYESL--------------- 243 Query: 181607 HPLFLSVRGNRMAPGVVRERVKRAALSAGIPANVHPHVLRHSFATHVLQSSGDLRAVQEL 181786 P R G R ++R + +PA HVLRH+FA+H + + G++ +Q + Sbjct: 244 -PDDKKGRLFSDCYGAFRSALERTGIE--LPAGQLTHVLRHTFASHFMMNGGNILVLQRV 300 Query: 181787 LGHASVAATQIYTSLDFQHL 181846 LGH + T Y HL Sbjct: 301 LGHTDIKMTMRYAHFAPDHL 320 >ref|NP_944303.1|conserved phage mega protein Length = 4602 Score = 47.8 bits (112), Expect = 5e-04 Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 2/145 (1%) Frame = -3 Query: 129160 PSPYRDIVERYAQSTGLDVEWAYGLIRQESRFITNAR-SSVGAGGLMQLMPATAQLVAKK 128984 P+P RD V R AQ G+D ++A + ES R S+ GA G MQ+MP T K Sbjct: 64 PAPTRDDVTRRAQELGVDPKFALEIFNLESSGNFGTRDSNKGAVGGMQVMPDT-----YK 118 Query: 128983 LGMGTITRAQMHDIDTNIQLGTWYLADIYNNFDSS-PVLATAGYNAGPGRPRQWRQVLTR 128807 MGT A D N++ G Y+A ++ P L AGY +G R R + Sbjct: 119 AMMGTY--AGQRDAWNNLEAGLRYIAYGQKKLGTTDPALLAAGYQSGYDRASLKRGEIPN 176 Query: 128806 PVEGAIFAETIPFNETREYVKNVLS 128732 +G + TR Y + S Sbjct: 177 TTDGGM--------TTRAYAARIAS 193 >ref|NP_848303.1|internal virion protein Length = 1318 Score = 47.0 bits (110), Expect = 8e-04 Identities = 30/108 (27%), Positives = 48/108 (44%) Frame = -3 Query: 129160 PSPYRDIVERYAQSTGLDVEWAYGLIRQESRFITNARSSVGAGGLMQLMPATAQLVAKKL 128981 PS Y + ++ A + G+ + + ESRF+ A+S G G+MQ ATA + ++ Sbjct: 9 PSDYDGLFQKAADANGVSYDLLRKVAWTESRFVPTAKSKTGPLGIMQFTKATANALGLRV 68 Query: 128980 GMGTITRAQMHDIDTNIQLGTWYLADIYNNFDSSPVLATAGYNAGPGR 128837 G ++ N +LA + FD + A YN G GR Sbjct: 69 TDGPDDDRLNPELAIN--AAAKHLAGLVGKFDGDELKAALAYNQGEGR 114 >ref|NP_046786.1|Int Length = 337 Score = 47.0 bits (110), Expect = 8e-04 Identities = 34/116 (29%), Positives = 51/116 (43%) Frame = +2 Query: 181499 VRGKGNKERKVPVGRKAIAALNAWLAVRGEFVKHDPHPLFLSVRGNRMAPGVVRERVKRA 181678 V+ K NK R VP+ +A+A + A RG +P F R Sbjct: 214 VKTKTNKPRTVPIS-EAVAKMIADNK-RGFLFPDADYPRF---------------RRTMK 256 Query: 181679 ALSAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHL 181846 A+ +P H LRHSFATH + + G + +Q +LGH + T +Y ++L Sbjct: 257 AIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYL 312 >ref|NP_523341.1|internal virion protein D Length = 1318 Score = 47.0 bits (110), Expect = 8e-04 Identities = 30/108 (27%), Positives = 48/108 (44%) Frame = -3 Query: 129160 PSPYRDIVERYAQSTGLDVEWAYGLIRQESRFITNARSSVGAGGLMQLMPATAQLVAKKL 128981 PS Y + ++ A + G+ + + ESRF+ A+S G G+MQ ATA + ++ Sbjct: 9 PSDYDGLFQKEADANGVSYDLLRKVAWTESRFVPTAKSKTGPLGIMQFTKATANALGLRV 68 Query: 128980 GMGTITRAQMHDIDTNIQLGTWYLADIYNNFDSSPVLATAGYNAGPGR 128837 G ++ N +LA + FD + A YN G GR Sbjct: 69 TDGPDDDRLNPELAIN--AAAKHLAGLVGKFDGDELKAALAYNQGEGR 114 >ref|NP_438114.1|integrase-like protein Length = 365 Score = 46.6 bits (109), Expect = 0.001 Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 11/176 (6%) Frame = +2 Query: 181337 LPDTTEGIRDHAILELFYSSGLRLAELVGLD----------AMYTQADGYRSAGWLDLAE 181486 L + E + I L G R+ EL+ L T+ Y GW Sbjct: 186 LVEAEETLEMRLIYRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIAYTKEGWA---- 241 Query: 181487 AEVTVRGKGNKERKVPVGRKAIAALNAWLAVRGEFVKHDPHPLFLSVRGNRMAPGVVRER 181666 + K N+ + ++A L ++K PL S + A VR+R Sbjct: 242 VQSPKTKKSNRTISMDAETMSLAKL---------YIKQSIKPLHGSFKLFNFASDTVRKR 292 Query: 181667 VKRAALSAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAAT-QIYTSL 181831 + R L G+ + PH RH+ A+ + ++ + QE LGHA +A T +YT L Sbjct: 293 LDRFILKHGLK-RITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHL 347 >ref|NP_795541.1|putative integrase Length = 384 Score = 46.6 bits (109), Expect = 0.001 Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 11/176 (6%) Frame = +2 Query: 181337 LPDTTEGIRDHAILELFYSSGLRLAELVGLD----------AMYTQADGYRSAGWLDLAE 181486 L + E + I L G R+ EL+ L T+ Y GW Sbjct: 205 LVEAEETLEMRLIYRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIAYTKEGWA---- 260 Query: 181487 AEVTVRGKGNKERKVPVGRKAIAALNAWLAVRGEFVKHDPHPLFLSVRGNRMAPGVVRER 181666 + K N+ + ++A L ++K PL S + A VR+R Sbjct: 261 VQSPKTKKSNRTISMDAETMSLAKL---------YIKQSIKPLHGSFKLFNFASDTVRKR 311 Query: 181667 VKRAALSAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAAT-QIYTSL 181831 + R L G+ + PH RH+ A+ + ++ + QE LGHA +A T +YT L Sbjct: 312 LDRFILKHGLK-RITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHL 366 >ref|NP_958084.1|gp27 Length = 349 Score = 46.6 bits (109), Expect = 0.001 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 1/114 (0%) Frame = +2 Query: 181508 KGNKERKVPVGRKAIAALNAWLAVRGEFVKHDPHPLFLSVRGNRMAPGVVRERVKRAALS 181687 KG K R VP+ + WL + LS R RM +E K L+ Sbjct: 234 KGKKNRTVPITK--------WLYEK------------LSTRQGRMFKPCYQEFKKMLLLT 273 Query: 181688 -AGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHL 181846 + HVLRH+F H + + G++ +Q++LGHA++ T Y+ HL Sbjct: 274 DIELTEGQKTHVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYSHFAPDHL 327 >ref|NP_817766.1|gp5 Length = 237 Score = 46.2 bits (108), Expect = 0.001 Identities = 50/144 (34%), Positives = 63/144 (43%), Gaps = 13/144 (9%) Frame = -3 Query: 217630 VKEIFY-TLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCRFCDTDFVGTDGENGGK 217454 V E+F TLQGEG AG F R GCNL C +CDT + E+ Sbjct: 10 VSELFGPTLQGEGPYAGVTVQFLRLMGCNL-----------SCSWCDTPYTWDAREH--- 55 Query: 217453 FKDAAALVATIAGLWPHGEAHRF----VVCTGGEPMLQIDQPLVDAL--HA--AGFEIAI 217298 D A +A WP +V +GGEP+L A+ HA G E+ I Sbjct: 56 --DLNAETTLLA--WPDIVDALLPDTPLVISGGEPLLHQKHSAFQAVLQHAWRKGCEVHI 111 Query: 217297 ETNGSL-PVLDTIDW---ICVSPK 217238 ETNG+L P+ T+ VSPK Sbjct: 112 ETNGTLAPLAATVSGTTVFAVSPK 135 >ref|NP_042004.1|internal virion protein D Length = 1318 Score = 46.2 bits (108), Expect = 0.001 Identities = 30/108 (27%), Positives = 48/108 (44%) Frame = -3 Query: 129160 PSPYRDIVERYAQSTGLDVEWAYGLIRQESRFITNARSSVGAGGLMQLMPATAQLVAKKL 128981 PS Y + ++ A + G+ + + ESRF+ A+S G G+MQ ATA+ + ++ Sbjct: 9 PSDYDGLFQKAADANGVSYDLLRKVAWTESRFVPTAKSKTGPLGMMQFTKATAKALGLRV 68 Query: 128980 GMGTITRAQMHDIDTNIQLGTWYLADIYNNFDSSPVLATAGYNAGPGR 128837 G ++ N LA + FD + A YN G GR Sbjct: 69 TDGPDDDRLNPELAIN--AAAKQLAGLVGKFDGDELKAALAYNQGEGR 114 >ref|NP_536807.1|integrase Length = 337 Score = 45.4 bits (106), Expect = 0.002 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%) Frame = +2 Query: 181661 ERVKRAALSAGI--PANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLD 181834 E + A L A I P HVLRH+FA+H + + G++ ++E+LGH+++ T Y Sbjct: 260 ESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFA 319 Query: 181835 FQHL 181846 HL Sbjct: 320 PSHL 323 >ref|NP_043466.1|integrase Length = 337 Score = 45.4 bits (106), Expect = 0.002 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%) Frame = +2 Query: 181661 ERVKRAALSAGI--PANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLD 181834 E + A L A I P HVLRH+FA+H + + G++ ++E+LGH+++ T Y Sbjct: 260 ESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFA 319 Query: 181835 FQHL 181846 HL Sbjct: 320 PSHL 323 >ref|NP_795660.1|putative integrase Length = 362 Score = 45.1 bits (105), Expect = 0.003 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 1/154 (0%) Frame = +2 Query: 181373 ILELFYSSGLRLAELVGLDAMYTQADGYRSAGWLDLAEAEVTVRGKGNKERKVPVGRKAI 181552 I L GLR+ E V L T D + + A+ T GK + K + I Sbjct: 195 IYRLLAYGGLRIGEAVAL--YDTDFDFTNNTISITKTLAQ-TKAGKVIQNPKTKKSSRTI 251 Query: 181553 AALNAWLAVRGEFVKHDPHPLFLSVRGNRMAPGVVRERVKRAALSAGIPANVHPHVLRHS 181732 + + + E+++ PL S R + VR R+KR + ++PH RH+ Sbjct: 252 SMDQETMRLAKEYMRQSVRPLHGSFRVFNLLTSTVRRRLKRTVERHHLK-KINPHGFRHT 310 Query: 181733 FATHVLQSSGDLRAVQELLGHASVAAT-QIYTSL 181831 A+ + ++ + QE LGHA ++ T +YT L Sbjct: 311 HASLLFEAGVPAKLAQERLGHAKISITMDLYTHL 344 >ref|NP_862840.1|gp1 Length = 375 Score = 45.1 bits (105), Expect = 0.003 Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 16/223 (7%) Frame = +2 Query: 181244 NPVAAVRAPKRPKTLP-------KALSVDDASALMDAPLPDTTEGIRDHAILELFYSSGL 181402 N V PK+P+TL K L++ + AL+DA L + + ++ + +G+ Sbjct: 152 NEVNYTVIPKKPETLEDIEKKRNKFLTMQEIKALIDA-LNNKPYQQKYADMVTVLALTGM 210 Query: 181403 RLAELVGLDAMYTQADGYRS--AGWLDLAEAEVTVRGKGNKERKVPVGRKAIAALNAW-- 181570 R EL L + + G D T+ R + V I A+ Sbjct: 211 RYGELTALQLKNIDFENNKIEITGNFDSINKIKTLPKTAKSIRTILVSDAVIKAIQRQVV 270 Query: