BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig25 (2129 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_944303.1|conserved phage mega protein 33 0.094 ref|NP_958267.1|hypothetical protein 31 0.47 ref|YP_195243.1|hypothetical protein 31 0.47 >ref|NP_944303.1|conserved phage mega protein Length = 4602 Score = 33.5 bits (75), Expect = 0.094 Identities = 38/140 (27%), Positives = 51/140 (36%), Gaps = 10/140 (7%) Frame = -3 Query: 822 QPPSTGKATPVMPAPAWPHRNTVTSPMRSGGNSVRLGCFSLSRSRMPAWRSPPNWAARAS 643 +P + TP PAP P +P SG ++ R+ P + P A A Sbjct: 610 EPAAEAAPTPAAPAPEAPAAAAPDAPAPSGPIG-----RAMERANGPVPAAVPEAAQPAG 664 Query: 642 ICGWMIAVSVQPGQMQLTVMPWAAVSSATPLDKPTSPCLAARYAPLLTEA---------- 493 I V Q +LT P V+ D+ +P A AP TE Sbjct: 665 --NGQIVVGDDGQQYRLTTGP-DGVTFEPIADETAAPAPADEAAPAPTEVKPEPAPAAPE 721 Query: 492 TKPCTEAMLTMRPQPRSRMP 433 TKP T+A P PR + P Sbjct: 722 TKPETKAAAPTEPAPREQKP 741 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 31.2 bits (69), Expect = 0.47 Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 9/76 (11%) Frame = +1 Query: 550 QRRGAGNRRP--RHHCQLHLPGLDRHRDHPAADRGARRPVRWRP-------PCGHPRPAE 702 +RR RRP R Q L G+ HR A G R VR RP P P P Sbjct: 157 RRRTRRRRRPDPRRRVQPRL-GVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEH 215 Query: 703 REAAQPDAVTSRTHRR 750 A +P T R HRR Sbjct: 216 PRAVRPRRRTGRRHRR 231 >ref|YP_195243.1|hypothetical protein Length = 749 Score = 31.2 bits (69), Expect = 0.47 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = -3 Query: 1848 ISSMPVLCSTLAEAISLMMPATRLMLVTISSMVLPAASTSWLPALTLST 1702 I++ ++ ST+A I+ M +RL I ++ PAAS LPA +S+ Sbjct: 432 IAAGSLMLSTIANVINSMGGLSRLFRPVIQKLITPAASVFGLPASIISS 480 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,214,596 Number of Sequences: 14420 Number of extensions: 197922 Number of successful extensions: 740 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 663 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 738 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 1023348315 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig29 (2434 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164319.1|hypothetical protein 33 0.11 ref|YP_195242.1|hypothetical protein 33 0.18 ref|NP_542309.1|unknown 32 0.41 >ref|YP_164319.1|hypothetical protein Length = 116 Score = 33.5 bits (75), Expect = 0.11 Identities = 15/49 (30%), Positives = 20/49 (40%) Frame = -1 Query: 241 CCTSCSLSAWLYSPTTLRFSWDSSCSLWVLRPPTLNSRTDSSCAKACWW 95 CCT C + +R S D W+ +P + T S A CWW Sbjct: 36 CCTGCWCCTPIRRRCRMRLSTDRRTCWWIRQPSAMRRATGS--APGCWW 82 >ref|YP_195242.1|hypothetical protein Length = 1167 Score = 32.7 bits (73), Expect = 0.18 Identities = 20/70 (28%), Positives = 32/70 (45%) Frame = +1 Query: 2125 STGSVKRKQPSEPGSAQSLPPWASTIARQMLKPTPMPPGLSEGPASNRVCRRAVPTPGPL 2304 S G + P G+A+S A T P P P L+ PA++ + TPGP+ Sbjct: 1021 SAGELSSSMPKRVGAAESAFNSAGTA------PPPSPAPLAAPPAASVAAEQQTMTPGPM 1074 Query: 2305 SRTSISNSPS 2334 + T+ +P+ Sbjct: 1075 ALTTPPVTPA 1084 >ref|NP_542309.1|unknown Length = 217 Score = 31.6 bits (70), Expect = 0.41 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 5/91 (5%) Frame = +2 Query: 1733 KARQGVLDRTQKLLAVKRFFNKVHGICQKRLSGRGDVSVRCYDNDWQTRTALS-----QT 1897 KAR+ V+ R +K + F NK++G Q+ ++ R + V D T S + Sbjct: 102 KARESVMKREEKRTESRDFVNKINGSKQRSINDRSSIPVPVPDRIKPTERLSSGVEEDRP 161 Query: 1898 PLKL*PRHAGHSDVNHHTASPIGLKRRQKVL 1990 P H+ + H + + ++ Q++L Sbjct: 162 DPADGPSEPDHNHIGRHDDTVVPIENHQRLL 192 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,510,958 Number of Sequences: 14420 Number of extensions: 255752 Number of successful extensions: 789 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 741 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 789 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1179436115 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig43 (2302 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,467,012 Number of Sequences: 14420 Number of extensions: 177429 Number of successful extensions: 529 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 497 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 529 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1106855431 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig46 (2426 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_795534.1|hypothetical protein 34 0.082 >ref|NP_795534.1|hypothetical protein Length = 593 Score = 33.9 bits (76), Expect = 0.082 Identities = 21/95 (22%), Positives = 46/95 (48%) Frame = +3 Query: 1740 DGMTVALAAEHSIDGIIANSIAPGFIDTDLTHHMLGDAGIKALVSKVPANRLGQVSEIAR 1919 D + A + + + +I+ ++ G ++T + D A+ K+PA+++ I+ Sbjct: 254 DNQSNATSRINQLSDLISTKVSKGDVETTIAQSY--DKIAFAIRDKLPASKMSGSEIISA 311 Query: 1920 LVLWLASEENTFIAGQNVAIDGGLHVSDDLIIPSH 2024 + L I G+N+ +DG H+S+ +I +H Sbjct: 312 INL---DRSGVKITGKNITLDGNSHISNAVIKDAH 343 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,986,528 Number of Sequences: 14420 Number of extensions: 311484 Number of successful extensions: 883 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 830 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 883 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1176136993 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig48 (1996 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_899523.1|aerobic ribonucleoside diphosphate reductase lar... 67 7e-12 ref|YP_195185.1|ribonucleotide reductase A subunit 66 1e-11 ref|NP_049845.1|NrdA aerobic NDP reductase, large subunit 60 1e-09 ref|NP_861929.1|NrdA aerobic NDP reductase, large subunit 59 2e-09 ref|NP_943927.1|NrdA-A aerobic NDP reductase large subunit 52 3e-07 ref|NP_569764.1|hypothetical protein 47 8e-06 ref|NP_891805.1|aerobic NDP reductase large subunit 42 2e-04 ref|NP_813758.1|putative lysozyme 41 4e-04 ref|NP_818286.1|gp236 37 0.006 ref|NP_818577.1|gp39 35 0.030 ref|NP_943919.1|NrdD anaerobic NTP reductase large subunit 34 0.067 ref|NP_958267.1|hypothetical protein 33 0.15 ref|NP_944360.1|gp51 32 0.33 ref|NP_052123.1|19.2 protein 31 0.43 >ref|NP_899523.1|aerobic ribonucleoside diphosphate reductase large subunit Length = 741 Score = 67.0 bits (162), Expect = 7e-12 Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 11/201 (5%) Frame = -1 Query: 724 ARLKGIIESACAGLGADIKPEPILAETMRNLYDGVPMEEVYKASI-LAARTLIEKDPDYT 548 ++L ++ AC D P +LA L DG+ +++ KA+I +AA ++ ++PDY Sbjct: 16 SKLMRVLSDACKNTTID--PHQLLARVKAQLSDGMTSKDIQKAAIKIAADSISVEEPDYQ 73 Query: 547 YATARLLFHTIANEVLGR-DVVQADMAQAYVDYFPQFIKKGIDHELLD----ERLQQFDL 383 Y ARL + + +V G+ D + F Q I++ E+ D E+ +L Sbjct: 74 YVAARLAMYGLRKDVYGQFDPIP----------FKQLIERNTAIEVYDSEILEKWSDSEL 123 Query: 382 QRLGAALKAERDLKFDYLGLQTLYDRYFL-HVGKARI-ELPQAFFMRVAMGLSLGE-IDR 212 + L + +K ERD F Y G+ ++Y + G I E PQ +M +AM L E DR Sbjct: 124 EYLESQVKHERDFDFAYAGVMQFKEKYLCKNRGTGAIYETPQYAYMLIAMCLHQEEKYDR 183 Query: 211 KARAIEVYEVLVL--LSNPCP 155 I+ Y + LS P P Sbjct: 184 LKHVIDFYNAVSTQKLSLPTP 204 >ref|YP_195185.1|ribonucleotide reductase A subunit Length = 776 Score = 66.2 bits (160), Expect = 1e-11 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 4/171 (2%) Frame = -1 Query: 733 LDLARLKGIIESACAGLGADIKPEPILAETMRNLYDGVPMEEVYKASILAARTLIEKD-P 557 L+L ++ ++E AC L A + + + +DG+ E + + I +A LI D P Sbjct: 20 LNLEKVHKMVEEACEDL-AGVSASQVEMHSGIQFHDGITTENIQEILIRSASDLISLDNP 78 Query: 556 DYTYATARLLFHTIANEVLGRDVVQADMAQAY-VDYFPQFIKKGIDHELLDERLQQFDLQ 380 +Y Y ARLL + +V ++V + M AY V + I K D +LLD+ + D Sbjct: 79 NYQYVAARLLLFGLRKQVFNKNVWKDGMPSAYDVALYNVTINKVYDEDLLDKYSDE-DWV 137 Query: 379 RLGAALKAERDLKFDYLGLQTLYDRYFLHVGKAR--IELPQAFFMRVAMGL 233 ++ + +RD F Y GL+ + D+Y + + E PQ ++ +AM L Sbjct: 138 KVNNMIDHDRDYLFTYAGLRQVVDKYLVQDRSSGEIYETPQYMYLFIAMTL 188 >ref|NP_049845.1|NrdA aerobic NDP reductase, large subunit Length = 754 Score = 59.7 bits (143), Expect = 1e-09 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 6/177 (3%) Frame = -1 Query: 691 AGLGADIKPEPILAETMRNLYDGVPMEEVYKASILAARTLIE-KDPDYTYATARLLFHTI 515 A G + P + L DG+ +++ I AA I ++PDY Y AR L + Sbjct: 28 AAEGTSVDPYELYENIKSYLRDGMTTDDIQTIVIKAAANSISVEEPDYQYVAARCLMFAL 87 Query: 514 ANEVLGRDVVQADMAQAYVDYFPQFIKKG-IDHELLDERLQQFDLQRLGAALKAERDLKF 338 V G+ ++++D+ + G D ELL + + ++ L + +K ERD++F Sbjct: 88 RKHVYGQYE-----PRSFIDHISYCVNAGKYDPELLSKYSAE-EITFLESKIKHERDMEF 141 Query: 337 DYLGLQTLYDRYFLH---VGKARIELPQAFFMRVAMGLSLGE-IDRKARAIEVYEVL 179 Y G L ++Y + G+ E PQ FM + M L E +DR I YE + Sbjct: 142 TYSGAMQLKEKYLVKDKTTGQI-YETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAV 197 >ref|NP_861929.1|NrdA aerobic NDP reductase, large subunit Length = 751 Score = 58.9 bits (141), Expect = 2e-09 Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 6/174 (3%) Frame = -1 Query: 682 GADIKPEPILAETMRNLYDGVPMEEVYKASI-LAARTLIEKDPDYTYATARLLFHTIANE 506 G I P + E +L DG+ +++ K I +AA ++ ++PDY Y A+ L + + Sbjct: 28 GTQIDPYELYEEIKTHLVDGMSTKDIQKICIKVAANSISVEEPDYQYVAAKGLMFALRKD 87 Query: 505 VLGRDVVQADMAQAYVDYFPQFIKKG-IDHELLDERLQQFDLQRLGAALKAERDLKFDYL 329 V G+ A++D+ + +G D ELL R ++ L + +K ERD Y Sbjct: 88 VYGQFE-----PPAFIDHISYCVNEGKYDPELLS-RYSAEEIIYLDSRIKHERDFDLTYA 141 Query: 328 GLQTLYDRYFLH---VGKARIELPQAFFMRVAMGLSLGEI-DRKARAIEVYEVL 179 G L ++Y + GK E PQ M + M L E DR I Y+ + Sbjct: 142 GAMQLKEKYLVKDKTTGKI-YETPQFAIMAIGMALHQDETHDRLKHIIRFYDAV 194 >ref|NP_943927.1|NrdA-A aerobic NDP reductase large subunit Length = 473 Score = 51.6 bits (122), Expect = 3e-07 Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 10/189 (5%) Frame = -1 Query: 691 AGLGADIKPEPILAETMRNLYDGVPMEEVYKASI-LAARTLIEKDPDYTYATARLLFHTI 515 A G I P IL M ++ DG+ + + K +I AA + + DY Y ARL + I Sbjct: 25 ATAGTRIDPNEILNGIMPSITDGMSTKNIQKLAIKFAADRISIEQSDYQYVAARLQMYAI 84 Query: 514 ANEVLGR-DVVQADMAQAYVDYFPQFIKKGIDHELLDERLQQFDLQRLGAALKAERDLKF 338 +V + D + + ++ GI + L + + L A +K +RD Sbjct: 85 RKDVYNQFDPIHLKR------HTLDLVQDGIYDKDLAIKWTDDEFNELNAYIKHDRDFDL 138 Query: 337 DYLGLQTLYDRYFLHVGKAR-----IELPQAFFMRVAMGLSLGE-IDRKARAIEVYEVLV 176 Y G+ ++Y + K R E PQ +M VAM L E DR A+ Y+V Sbjct: 139 AYAGVMQFKEKY---LAKDRSTDQIYETPQILYMLVAMCLHQDEKTDRIAKVKNFYDVTS 195 Query: 175 L--LSNPCP 155 L LS P P Sbjct: 196 LGKLSLPTP 204 >ref|NP_569764.1|hypothetical protein Length = 547 Score = 47.0 bits (110), Expect = 8e-06 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 14/86 (16%) Frame = -2 Query: 1689 AWHAGVSSYRGRSDCNNNAIGIELEGVDDAPFD---------ERQYETLVSLCAAILQRY 1537 AWHAGV SY G + N NA+ I +E + +D + QY+ V CAAI +R Sbjct: 266 AWHAGVGSYPGLPEDNANAVTIGIEAQNSGTYDGAPHRTNWPDAQYDAYVKCCAAICRRL 325 Query: 1536 PI--TQVAGHEHIAPGRKT---DPGS 1474 + V H+ A GRK DPG+ Sbjct: 326 GVRADHVISHKEWA-GRKQGKWDPGA 350 >ref|NP_891805.1|aerobic NDP reductase large subunit Length = 747 Score = 42.0 bits (97), Expect = 2e-04 Identities = 47/214 (21%), Positives = 86/214 (40%), Gaps = 3/214 (1%) Frame = -1 Query: 760 VVDKGGRIVLDLARLKGIIESACAGLGADIKPEPILAETMRNLYDGVPMEEVYKASI-LA 584 V G + + ++ I+E+A G D P + L +G+ ++ K I +A Sbjct: 6 VKSSGLTVPFEKEKVMKILEAAAEGHNVD--PYELFDMVEPLLTEGMSTNDIQKVLIKVA 63 Query: 583 ARTLIEKDPDYTYATARLLFHTIANEVLGRDVVQADMAQAYVDYFPQFIKKGIDHELLDE 404 A + + PDY Y + L + V G Q Y D E+L + Sbjct: 64 ADNITVETPDYQYVASNLAMFALRKSVYG----QFQPIDFYSHIERNIATGKYDREIL-Q 118 Query: 403 RLQQFDLQRLGAALKAERDLKFDYLGLQTLYDRYFL--HVGKARIELPQAFFMRVAMGLS 230 + + +++ L + + D K Y G L ++Y + K IE PQ +M + G+ Sbjct: 119 KYSREEVEYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFAYMLI--GMC 176 Query: 229 LGEIDRKARAIEVYEVLVLLSNPCPGTPTLVNSG 128 L + + + R V + ++N PT + +G Sbjct: 177 LHQEETENRLEHVIDFYNAVANKQISLPTPIMAG 210 >ref|NP_813758.1|putative lysozyme Length = 146 Score = 41.2 bits (95), Expect = 4e-04 Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 1/142 (0%) Frame = -2 Query: 1884 DLIVLHCISLPPGQ-YGRDEVQRLFTNQLDWNAHPYFKRIEGMQVSSHFYIRRQGELQQF 1708 D IV+HC + G E+++ Q W + + HF IRR G ++ Sbjct: 13 DFIVVHCAATKASMDIGVREIRQWHVQQ-GW-----------LDIGYHFVIRRNGTVENG 60 Query: 1707 VSCDQRAWHAGVSSYRGRSDCNNNAIGIELEGVDDAPFDERQYETLVSLCAAILQRYPIT 1528 D H V +Y R+ A GI+ +G F Q+ +L L A ++YP Sbjct: 61 RPHDVIGSH--VKNYNSRALGICLAGGIDDKGQPQNNFTPEQFASLKLLLIANKRQYPQA 118 Query: 1527 QVAGHEHIAPGRKTDPGSGFDW 1462 Q+ GH + G+ DW Sbjct: 119 QIVGHHDLDSGKACPSFKVSDW 140 >ref|NP_818286.1|gp236 Length = 476 Score = 37.4 bits (85), Expect = 0.006 Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 14/107 (13%) Frame = -2 Query: 1755 VSSHFYIRRQGELQQFVSCDQR-AWHAGVSSYRG--RSDCNNNAIGIEL--EGVDDAP-- 1597 ++S Y+ R GE + C AWHAG SY G +D N IGIE +G P Sbjct: 235 LASQLYLGRNGE---YTLCGVGIAWHAGQGSYPGLPTNDANRLTIGIEAANDGGGSPPGK 291 Query: 1596 ---FDERQYETLVSLCAAILQRY--PITQVAGHEHIA--PGRKTDPG 1477 + + QY V AAIL++ ++V GH+ A K DPG Sbjct: 292 RDAWSDVQYNAYVRGVAAILRKLGRDSSRVIGHKEWAGTAQGKWDPG 338 >ref|NP_818577.1|gp39 Length = 351 Score = 35.0 bits (79), Expect = 0.030 Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 14/95 (14%) Frame = -2 Query: 1689 AWHAGVSSYRGRSDCNNNAIGIELEGVDD----------APFDERQYETLVSLCAAILQ- 1543 AWHAG S+ G N N I +E +D A + QY+ V AAIL+ Sbjct: 84 AWHAGNGSWPGLGTNNANPRTIGIEAANDGGGKPGRPHRADWPAVQYDHYVEGNAAILKF 143 Query: 1542 -RYPITQVAGHEHIAPGR--KTDPGSGFDWALLQQ 1447 P+T GH+ A K DPG G D L ++ Sbjct: 144 LNEPVTHSIGHKEWAGAAQGKWDPG-GIDMNLFRK 177 >ref|NP_943919.1|NrdD anaerobic NTP reductase large subunit Length = 704 Score = 33.9 bits (76), Expect = 0.067 Identities = 30/120 (25%), Positives = 50/120 (41%) Frame = -1 Query: 1105 QIIRRNGAVVPFEPNKIAVAMMKAFLAVHGTQGAASASVRESVDGLTQGVIHALMRSRPA 926 Q+ +R+G VV F+ + I A+ + +++ E+V +R Sbjct: 2 QVQKRDGRVVDFDQSFIETAITNSLQSINIIDPTFPHHATEAV-----------VRKLIG 50 Query: 925 GGTFHIEDVQDQVELGLMRGGHHEVARAYVLYREKRTQERAQQLIATAATAPLLHVVDKG 746 IE++Q VE LM+ + VAR+Y+ YR R R T L+ D+G Sbjct: 51 RNLVTIEEIQHVVEDTLMKSRYPAVARSYIEYRYDRDVARDLNSDMTKRIMGLMKQEDEG 110 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 32.7 bits (73), Expect = 0.15 Identities = 25/72 (34%), Positives = 28/72 (38%) Frame = -3 Query: 710 HHRVGLRRLGCRHQA*ADPGRDDAQPVRRRPDGGGVQGLHPGCTHADREGPRLHLCHRPF 531 H R G RR+G R + A PG A+ RRRP HP R R H Sbjct: 181 HRRRGARRVGRRVRVRARPGPGAARRPRRRP-----HPEHPRAVRPRRRTGRRHRRRASL 235 Query: 530 VVSHYRQRSPGP 495 H R RS P Sbjct: 236 RPRHRRHRSTPP 247 >ref|NP_944360.1|gp51 Length = 521 Score = 31.6 bits (70), Expect = 0.33 Identities = 28/109 (25%), Positives = 43/109 (39%) Frame = -3 Query: 1925 AFTHYGPGRVRPRLT*SCCIASVCPLASMAVTRYSACLPTSWTGTHIPTSNGSRACRCRP 1746 A + PG++ + A+V P+A +T P + T TS + P Sbjct: 24 ALGQFAPGQILTAAQLNAAFANVLPIAGGTLTG-----PLTATTLTATTSVSA------P 72 Query: 1745 TFTSVARVNCSSLSVATSAPGMRACRVTGDAAIAITTPLASSWRGLTTP 1599 + A ++ +L V TS G +TG A A+TT A L P Sbjct: 73 AVNATASMSTPALVVTTSLTGAAKAALTGTATSALTTDQAQITGQLNNP 121 >ref|NP_052123.1|19.2 protein Length = 77 Score = 31.2 bits (69), Expect = 0.43 Identities = 19/77 (24%), Positives = 32/77 (41%) Frame = -2 Query: 636 TCTTASRWRRCTRPPSWLHAR*SRRTPITPMPPPVCCFTLSPTKSWAGMWCRPTWHKPMS 457 TCT A+ W RC+ S + +R S+ +TP C W +S Sbjct: 19 TCTMATVWPRCSAKSSTMGSRCSKVNRLTP--------------------CASIWKTCVS 58 Query: 456 ITFPNLSKRELTTNCST 406 +++ + L ++CST Sbjct: 59 VSWNTVRLASLCSSCST 75 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,858,714 Number of Sequences: 14420 Number of extensions: 271430 Number of successful extensions: 791 Number of sequences better than 0.5: 14 Number of HSP's better than 0.5 without gapping: 715 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 784 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 948469170 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig53 (1984 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_690824.1|NTPase P4 33 0.15 >ref|NP_690824.1|NTPase P4 Length = 331 Score = 32.7 bits (73), Expect = 0.15 Identities = 15/53 (28%), Positives = 27/53 (50%) Frame = +3 Query: 975 ADGFTVLTGETGAGKSILIDALQLVTGGRADVGVIREGSSRTDVSAEFDATAD 1133 A G ++TG+ +GK+ L+ AL GG+ +R G + + +F+ D Sbjct: 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVD 174 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,731,298 Number of Sequences: 14420 Number of extensions: 234626 Number of successful extensions: 850 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 775 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 849 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 941813246 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig57 (2304 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945089.1|gp58 33 0.17 >ref|NP_945089.1|gp58 Length = 297 Score = 32.7 bits (73), Expect = 0.17 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = -1 Query: 2193 AIVEEGGFERAAVRLSITHPAVSQRLRSLEVQVGTVLIV-GSRPLKPTSAGR 2041 A G F RAA L++ AVS+++ LE +GT L V ++ L T AG+ Sbjct: 17 AAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,687,518 Number of Sequences: 14420 Number of extensions: 235869 Number of successful extensions: 695 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 642 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 695 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1108504992 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig58 (2310 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,162,589 Number of Sequences: 14420 Number of extensions: 294507 Number of successful extensions: 845 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 786 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 845 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1111804114 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig61 (2596 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542287.1|unknown 34 0.067 ref|NP_861870.1|gp18 tail sheath protein 32 0.26 >ref|NP_542287.1|unknown Length = 224 Score = 34.3 bits (77), Expect = 0.067 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Frame = +1 Query: 460 VRSSRSSHCVKTAAKRSGPIGPPAISCALTVPCRSRDSCWR*PMASQSKAQSTGPTRVPA 639 V + RSS C+ A P P I + C SR P ++ + + PTR A Sbjct: 3 VSTYRSSTCIP--ASSISPCPAPVI-----ITCTSRMR----PTWTRPERRCASPTR-SA 50 Query: 640 TSSTPLRHLRCARPTS----LRPSAFTSSHGDRPPKQAQLTVLTALASWALGSSCGGRAR 807 S T R R A PTS LR S +S+ G P +++ L ++A+W+ S+ RAR Sbjct: 51 ASPTFRRWTRSAWPTSRSRRLR-SKISSARG--PAQRSSKRRLPSIAAWSKHSARSQRAR 107 Query: 808 AATPNALSTS 837 + +L+T+ Sbjct: 108 SLPSKSLATA 117 >ref|NP_861870.1|gp18 tail sheath protein Length = 660 Score = 32.3 bits (72), Expect = 0.26 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 8/48 (16%) Frame = -1 Query: 1267 VLVKANQDIVAPD--------DGRVEKILVPAGETFARGKPIAVLKEL 1148 V+VK + DI+ PD DG++ I +P+G+ A+ K I EL Sbjct: 116 VVVKYSTDIIEPDGEVTSVDSDGKILNIFIPSGKIIAKAKEIGEYPEL 163 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,651,178 Number of Sequences: 14420 Number of extensions: 261591 Number of successful extensions: 909 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 801 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 908 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1255788288 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig62 (2130 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,272,088 Number of Sequences: 14420 Number of extensions: 238290 Number of successful extensions: 791 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 727 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 791 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 1023348315 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig65 (2423 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,681,402 Number of Sequences: 14420 Number of extensions: 263691 Number of successful extensions: 820 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 738 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 817 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1174487432 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig70 (1992 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061653.1|transposase 69 2e-12 ref|NP_040341.1|putative transposase 48 3e-06 >ref|NP_061653.1|transposase Length = 328 Score = 68.6 bits (166), Expect = 2e-12 Identities = 30/61 (49%), Positives = 41/61 (67%) Frame = -1 Query: 1755 YFCDPHSPWQRGSNENPNRLQRQYFPEGIDISSYSQAQLHAVARKLNERPRKTLNYDTPA 1576 YF DP+S WQRG+NEN N L R++FP+ D++ +Q QL+ +N RPRK LN+ P Sbjct: 258 YFADPYSAWQRGTNENTNGLLREFFPKKTDLAKVNQEQLNYALDSINYRPRKCLNWKFPY 317 Query: 1575 E 1573 E Sbjct: 318 E 318 >ref|NP_040341.1|putative transposase Length = 322 Score = 48.1 bits (113), Expect = 3e-06 Identities = 25/65 (38%), Positives = 35/65 (53%) Frame = -1 Query: 1755 YFCDPHSPWQRGSNENPNRLQRQYFPEGIDISSYSQAQLHAVARKLNERPRKTLNYDTPA 1576 YFCD SP Q+ E N R +FP+G D + SQ Q+ V +N++ R LN+ + Sbjct: 256 YFCDAGSPQQKPLIEYMNSELRHWFPKGTDFNKVSQKQIDWVVNVINDKLRPCLNWISSK 315 Query: 1575 ERFSQ 1561 E F Q Sbjct: 316 EMFLQ 320 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,814,846 Number of Sequences: 14420 Number of extensions: 221070 Number of successful extensions: 567 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 544 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 567 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 946805189 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig75 (2084 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 41 6e-04 ref|NP_817998.1|gp25 32 0.20 ref|NP_817477.1|gp27 32 0.27 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 40.8 bits (94), Expect = 6e-04 Identities = 58/203 (28%), Positives = 65/203 (32%), Gaps = 19/203 (9%) Frame = +3 Query: 1440 RPRNNCRPNLAPTR--RPDSCGPQHPARN-----------HDPAATGRAMHHCSQGFPQD 1580 R R P+L P R PD P HP R H P A R + P Sbjct: 32 RVRTRPHPHLGPARDRSPDHPEPDHPCRRAPSRPAAGPRRHPPVARTRPRTRAPECAPDP 91 Query: 1581 GPRS*IRPFWAPTGARRRVRPCLA*TAKIARNP*PLTPGHRHRIPEPRSRAHRSAAFAPR 1760 GP V P A A P R R PE AH APR Sbjct: 92 GP---------------AVHPAAPGCAPAAPAAPEYAPALRPRAPECDRGAHHLRTRAPR 136 Query: 1761 LR------GRGQRVRQCERAVRVARKTRCRSYPAA*KCGPVDTRLASGR*LFPPRAPVHP 1922 R G G RVR V R+TR R P + V RL G VH Sbjct: 137 TRTRAVPLGPGARVR---TPVEDRRRTRRRRRPDPRR--RVQPRLGVG---------VHR 182 Query: 1923 WRGHTPIRYRAQTAAAKRPGDAK 1991 RG + R + A PG A+ Sbjct: 183 RRGARRVGRRVRVRARPGPGAAR 205 >ref|NP_817998.1|gp25 Length = 941 Score = 32.3 bits (72), Expect = 0.20 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = -3 Query: 1956 EPGTVWEYGRAT-DVLGRVVEIVSGQTLGAYLQDHIFKPLGMTDTGFSVPPEQHARIAEP 1780 EPGT +EY A ++ V+ V G+ + + + I PLG+T+T + A++ P Sbjct: 224 EPGTGFEYVNANWFIISLVLRAVRGRHIRDIITEDIITPLGLTETSWPAT----AKMPAP 279 Query: 1779 FARDPEG 1759 +A +G Sbjct: 280 YAVGHDG 286 >ref|NP_817477.1|gp27 Length = 946 Score = 32.0 bits (71), Expect = 0.27 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = -3 Query: 1965 LLFEPGTVWEYGRAT-DVLGRVVEIVSGQTLGAYLQDHIFKPLGMTDTGFSVPPEQHARI 1789 L+ +PGT +EY ++ +++ V G+ + L D I PLG+T+T + A + Sbjct: 221 LVRDPGTEFEYVNGNWFLISLILKAVRGKHIRQILYDDIINPLGLTETSWPAT----AAM 276 Query: 1788 AEPFARDPEG 1759 P+A +G Sbjct: 277 PAPYAVGHDG 286 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,066,205 Number of Sequences: 14420 Number of extensions: 236957 Number of successful extensions: 715 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 662 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 714 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 998388600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig76 (2264 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_932300.1|ORF5 33 0.13 >ref|NP_932300.1|ORF5 Length = 488 Score = 33.1 bits (74), Expect = 0.13 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Frame = +3 Query: 297 TTSAGVIGASCVTGSLPPPGATPNICTPQTCQTTNSKIGPGSGTC---TVLLRASNPRPA 467 TT G GAS G+ P ++ C Q C TT +G G T +V + A++ A Sbjct: 260 TTQPGGTGASAPAGTPPDTSSSNTTCDGQNCTTTTVVVGGGGRTVNCGSVHVSAASVPAA 319 Query: 468 NGRVT 482 +G T Sbjct: 320 SGPAT 324 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,907,995 Number of Sequences: 14420 Number of extensions: 248739 Number of successful extensions: 716 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 665 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 716 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1087060699 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig82 (2023 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164319.1|hypothetical protein 36 0.018 ref|NP_817692.1|gp15 33 0.12 ref|NP_690812.1|P6 membrane protein 32 0.20 >ref|YP_164319.1|hypothetical protein Length = 116 Score = 35.8 bits (81), Expect = 0.018 Identities = 29/100 (29%), Positives = 34/100 (34%), Gaps = 1/100 (1%) Frame = +1 Query: 262 RRPRKPCCTSCWVPLCC*WLRRMPPARPISDPRPKSGPAWCSTRWWCPSP-AFWRGSGCC 438 R + CCT CW CC +RR R +D R T WW P A R +G Sbjct: 30 RASARRCCTGCW---CCTPIRRRCRMRLSTDRR---------TCWWIRQPSAMRRATGSA 77 Query: 439 ASTWRRAWVCSRS*RPCLALPSARGCCMSRSSRAFCWGPC 558 W W R P M+ R CW C Sbjct: 78 PGCW---WSIRPRQRIASPAPFVSCTSMTPWCRMGCWIAC 114 >ref|NP_817692.1|gp15 Length = 1213 Score = 33.1 bits (74), Expect = 0.12 Identities = 26/99 (26%), Positives = 40/99 (40%) Frame = -1 Query: 1723 LRSDPQQIATQVLVPTMEGAMIPLGQLAKVIVAKGAPGIRTENALLSAYIYVDIRDRDIG 1544 L DPQQIA V G + Q +IVA G+ N LL + + RD+G Sbjct: 283 LEEDPQQIARGVRNFVKTGLVSDYEQAFDLIVASTQKGLNISNDLLDTFEEYGTKFRDLG 342 Query: 1543 SYVRDAKKAVAEQVSFPSGYYVTWSGQFENMERALETMK 1427 ++A + + W G N++ A + +K Sbjct: 343 INGQEALGLINQ----------LWEGGSRNVDVAADALK 371 >ref|NP_690812.1|P6 membrane protein Length = 230 Score = 32.3 bits (72), Expect = 0.20 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = +3 Query: 360 PQVWASLVFHSLVVSFASFL--AWFWLLRKYLASRLGVFSFMTPLFGIAFGAW 512 P +WA L + L SF SFL AW W+ + A+ + SF + +G AW Sbjct: 74 PAIWAFLQY--LWASFVSFLQVAWTWVTQTLGAAWQAISSFASAAWGYVQAAW 124 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,276,121 Number of Sequences: 14420 Number of extensions: 213204 Number of successful extensions: 873 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 792 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 869 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 963444999 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig83 (2038 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,293,934 Number of Sequences: 14420 Number of extensions: 249427 Number of successful extensions: 785 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 712 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 785 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 971764904 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig89 (2255 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542281.1|unknown 33 0.13 >ref|NP_542281.1|unknown Length = 165 Score = 33.1 bits (74), Expect = 0.13 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Frame = -3 Query: 1764 STCPRYSSITRWPLATTAWPGSGSP*WISVRRCWW--WAPSATTCRPGSR 1621 +T PR S RW LAT SP + + W PS+TTCRP R Sbjct: 114 TTEPRRKSTRRWALATIRCAAMPSPAFANAWTADWLVMRPSSTTCRPRIR 163 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,822,965 Number of Sequences: 14420 Number of extensions: 252921 Number of successful extensions: 877 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 793 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 874 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1082112016 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig98 (2030 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 33 0.15 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 32.7 bits (73), Expect = 0.15 Identities = 24/68 (35%), Positives = 30/68 (44%) Frame = -2 Query: 1477 RRCRSDPSAAGVPCRASVRALAPKTGHHPSPACACRR*PGQPTASAAAPGRPGPLRRTVP 1298 RR R+ P P R ++ HP P CRR P +P AA P R P+ RT P Sbjct: 31 RRVRTRPHPHLGPAR-------DRSPDHPEPDHPCRRAPSRP---AAGPRRHPPVARTRP 80 Query: 1297 ASLCRETA 1274 + E A Sbjct: 81 RTRAPECA 88 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,873,844 Number of Sequences: 14420 Number of extensions: 228569 Number of successful extensions: 838 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 758 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 834 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 968436942 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig105 (2317 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_510930.1|hypothetical protein 32 0.23 >ref|NP_510930.1|hypothetical protein Length = 128 Score = 32.3 bits (72), Expect = 0.23 Identities = 17/43 (39%), Positives = 24/43 (55%) Frame = -1 Query: 1051 GRLNSAGVNARLGQGDYIVVEADESDASFLNLSPVMAVVTNID 923 G+ +SA + ARL GD + V+ FLNL PV+ V +D Sbjct: 84 GKFDSADIQARLKVGDKVKVKTIGYRIHFLNLYPVLYEVKKVD 126 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,977,209 Number of Sequences: 14420 Number of extensions: 219210 Number of successful extensions: 668 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 626 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 666 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1115103236 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig107 (1995 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,602,333 Number of Sequences: 14420 Number of extensions: 257268 Number of successful extensions: 822 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 763 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 822 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 948469170 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig109 (2158 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061531.1|integrase 31 0.47 >ref|NP_061531.1|integrase Length = 369 Score = 31.2 bits (69), Expect = 0.47 Identities = 28/131 (21%), Positives = 52/131 (39%) Frame = -3 Query: 1649 NQGGINMARLQQHFREKLAPELMAKFGYTSPMQVPRLTKITLNMGVSEAVADKKVMDHAV 1470 N+G + + + FR + +PE F + +V I+L+ G +A K+ D + Sbjct: 234 NEGAMAALKRRMAFRSETSPECPWVFARANGDRV-----ISLSAGFKQACQAAKIADFTI 288 Query: 1469 SDLGKIAGQKPVVTMSKKAIAGFKIRENQAIGCMVTLRGVQMFEFLDRFVTVALPRVRDF 1290 DL + A + + + + L G +R+ +A RVRD Sbjct: 289 HDL-------------RHTCAAWLVSAGVPLADVRDLLGHSTVAMTERYAHLAPARVRDA 335 Query: 1289 RGISGRAFDGR 1257 G+ + +GR Sbjct: 336 VGVLDQVREGR 346 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,465,757 Number of Sequences: 14420 Number of extensions: 235190 Number of successful extensions: 689 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 650 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 689 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 1038324144 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig113 (2182 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046911.1|gp16 31 0.47 >ref|NP_046911.1|gp16 Length = 838 Score = 31.2 bits (69), Expect = 0.47 Identities = 52/226 (23%), Positives = 85/226 (37%), Gaps = 15/226 (6%) Frame = -3 Query: 1400 LEKLVGLPIRN*STRQGHTMNQAFICDAIRTPFGRYGGALSSVRTDDLGAIPLRALMARN 1221 L +L+ +R S + A DA P + A + TD L A+ + Sbjct: 189 LTELINAGVRTGSRFDEMSQAVARFTDASGVPVEKVAAAYGKLATDPTSG--LIAMAQQF 246 Query: 1220 HNVDWAAVTDVLYGCANQAGEDNRNIAHMASLLAGLPFEVPGATINRLCGSGLDAVGTAA 1041 HNV + V Q D A+ A F I G+ + + Sbjct: 247 HNVTAEQIAHV---AQLQRAGDEAGALQAANEAATAGFNDQTKAIRDNMGTIESSADSLK 303 Query: 1040 RAIKAGEATLMIAGGVESMSRAPFVMPKMDAAFGRANAVYDTTIGWRFINKLMKAQYGVD 861 RA K+ + G ++ A ++ K +AAF +A+ +++ G R++N +A++ D Sbjct: 304 RAFKSMWDAALDIGRPDT---AQEMVAKAEAAFKKADEIWNLRKGDRYVNDEARARFWND 360 Query: 860 SMPETAENV------------ATEFKIEREA---QDRMAWASQMKA 768 ETA A E REA DR +A+Q +A Sbjct: 361 R--ETARLALDMAQQQAGIARANEENASREAAAESDRQKYAAQAQA 404 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,031,890 Number of Sequences: 14420 Number of extensions: 263084 Number of successful extensions: 953 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 885 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 952 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1040872991 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig122 (2133 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817716.1|gp38 32 0.27 ref|NP_803695.1|ORF129 31 0.47 ref|NP_818493.1|gp193 31 0.47 >ref|NP_817716.1|gp38 Length = 231 Score = 32.0 bits (71), Expect = 0.27 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 6/80 (7%) Frame = +3 Query: 540 VRSSSPLASRLTLSLPPSARTSPTVTCRRARSALTSLMSR------RVSAAKESVTPSRA 701 + ++SP R + PP ++PT T + A A+ +L +R R + K S Sbjct: 85 ITATSPPPPRPAAAQPPVQHSTPTKTVQSASPAVVALPTRGGSVFVRTRSGKTVCQMSAG 144 Query: 702 SARSRSDTLAPSRLASNLPS 761 R D L P+ + + LP+ Sbjct: 145 DVRCNVDFLRPTPILNGLPA 164 >ref|NP_803695.1|ORF129 Length = 896 Score = 31.2 bits (69), Expect = 0.47 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = -3 Query: 1210 PSANLAIAPDGKFNLAELLATLERRPHEASTDASLPRVIVEQLALEQ 1070 P ANL + LA +A L P EA + PR++V+Q L++ Sbjct: 13 PLANLQVGGQYPTPLAATIAKLRHDPKEAGASTNNPRIVVDQHQLQK 59 >ref|NP_818493.1|gp193 Length = 104 Score = 31.2 bits (69), Expect = 0.47 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = -1 Query: 753 SLKPAWKAPRCRCA-IWRWRAKALPIPS 673 S++ AW+A C CA W W K P+PS Sbjct: 36 SMRWAWRAHDCECADWWDWSMKHCPVPS 63 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,876,577 Number of Sequences: 14420 Number of extensions: 230810 Number of successful extensions: 763 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 689 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 762 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 1025012296 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig126 (2194 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818545.1|gp7 38 0.005 >ref|NP_818545.1|gp7 Length = 563 Score = 37.7 bits (86), Expect = 0.005 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 1/115 (0%) Frame = +3 Query: 1632 PELDKKNTWNVGYWXXXXXXXXXXQNFWQSASQVQTV-PYSEFEKALTEERIADVTISER 1808 P + WN+G N+++ S VQ V P+ + K + E+ IA+ + + Sbjct: 311 PNTGELTDWNIGPMQIVEIAGNRNDNYFERVSGVQDVSPFQDHMKWIDEKGIAEGSGTPE 370 Query: 1809 TVIGRLKTPEGNKTTLAAVRVEPELAARLEKYKVPYSRTVDNTFLRDLLSWIVPA 1973 IGR+ ++++P LAA EK V + FL D ++ +PA Sbjct: 371 VAIGRVDVTSAESGISLELQLKPLLAANEEKELEMI--VVMDQFLHDWMTMWLPA 423 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,863,767 Number of Sequences: 14420 Number of extensions: 249996 Number of successful extensions: 864 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 802 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 864 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1047471235 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig127 (2024 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,451,246 Number of Sequences: 14420 Number of extensions: 254512 Number of successful extensions: 746 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 692 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 746 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 965108980 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig134 (2036 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_536371.1|putative tail length tape measure protein 33 0.089 ref|NP_945044.1|gp14 33 0.089 >ref|NP_536371.1|putative tail length tape measure protein Length = 1354 Score = 33.5 bits (75), Expect = 0.089 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Frame = -2 Query: 1720 RASLVRLRTGFQPGRGRMAATACVSTHVGGTTKAGDSP-QSGSGAMAVEVNLQGGAN 1553 RA L RL G + G R AA V GG+ GDSP ++G +++ V+++GG++ Sbjct: 1260 RAHLERLNAGGRSGFARFAAGGLV----GGSAGGGDSPARNGGISVSAPVSIEGGSS 1312 >ref|NP_945044.1|gp14 Length = 1354 Score = 33.5 bits (75), Expect = 0.089 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Frame = -2 Query: 1720 RASLVRLRTGFQPGRGRMAATACVSTHVGGTTKAGDSP-QSGSGAMAVEVNLQGGAN 1553 RA L RL G + G R AA V GG+ GDSP ++G +++ V+++GG++ Sbjct: 1260 RAHLERLNAGRRSGFARFAAGGLV----GGSAGGGDSPARNGGISVSAPVSIEGGSS 1312 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,678,590 Number of Sequences: 14420 Number of extensions: 264361 Number of successful extensions: 832 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 752 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 832 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 971764904 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig137 (2200 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,749,808 Number of Sequences: 14420 Number of extensions: 295721 Number of successful extensions: 994 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 903 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 994 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1050770357 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig138 (2133 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818168.1|gp95 35 0.032 ref|NP_817907.1|gp56 34 0.055 >ref|NP_818168.1|gp95 Length = 1370 Score = 35.0 bits (79), Expect = 0.032 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = -2 Query: 1931 GAIGYRLALCAH**PVLCHLRGQCA-GADRGPVQRRRSPRQGVAQGGDATD*IGASLAAR 1755 GA+ R+ALC PVL R Q A G+ RG + P G+ QG T G ++ A Sbjct: 1303 GAVQDRIALCERFVPVLAAARRQVASGSTRGAALKSPIP-SGLVQGAQRT--AGRAVVAA 1359 Query: 1754 QSPRSTATL 1728 PR+ A+L Sbjct: 1360 NDPRNDASL 1368 >ref|NP_817907.1|gp56 Length = 199 Score = 34.3 bits (77), Expect = 0.055 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = -1 Query: 1383 CHSACRSGGLCEPHSPSLARSAVGDGAQRACHARGCRGRSLCRKSW 1246 C S GLC+ H+ LA+ D A +GCRGRS + W Sbjct: 12 CDKVRHSNGLCQKHARRLAKFGTTDAA------KGCRGRSAEERFW 51 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,864,737 Number of Sequences: 14420 Number of extensions: 222616 Number of successful extensions: 829 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 757 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 827 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 1025012296 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig139 (2200 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046574.1|unknown 41 5e-04 >ref|NP_046574.1|unknown Length = 422 Score = 41.2 bits (95), Expect = 5e-04 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%) Frame = -1 Query: 1333 PLVSVIINCYNGEKYLKGAIDSVIAQTYENWEIIFWDNQSTDNSAVIVN-SYDDSRIKYF 1157 P ++ I YN K +K ++SV E II D+ STD++ I+ + D IKY Sbjct: 54 PTITCGIIVYNESKRIKKCLNSVKDDFNE---IIVLDSYSTDDTVDIIKCDFPDVEIKY- 109 Query: 1156 FAPEHTLLGEARNKAVAKASGEWIGILDCDDIWYQD 1049 ARNK + A+ EWI +D D+++ ++ Sbjct: 110 -EKWKNDFSYARNKIIEYATSEWIYFIDADNLYSKE 144 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,452,793 Number of Sequences: 14420 Number of extensions: 199116 Number of successful extensions: 524 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 496 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 524 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1050770357 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig141 (2277 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_049413.1|putative lysin 34 0.077 ref|NP_049985.1|putative lysin 32 0.22 ref|NP_049942.1|lysin 32 0.22 ref|NP_056699.1|lysin 32 0.29 ref|NP_038345.1|ORF44 31 0.50 >ref|NP_049413.1|putative lysin Length = 200 Score = 33.9 bits (76), Expect = 0.077 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 7/79 (8%) Frame = -1 Query: 2124 MGCQGKTIAMPGQRVRGFPAIKAYPVVERYGFIWVW------PGDAAQADEAKIPHM-AW 1966 + C T GQ + +P Y + +I VW P QA+ A +P A+ Sbjct: 113 ISCDYSTQGAVGQAINTYPW-NDYYAANKPNYIEVWRYAESAPQTNNQANTAVVPQQKAY 171 Query: 1965 YDNPEWAYGGGLYHINCDY 1909 Y+ E Y G++ I CDY Sbjct: 172 YEANEVKYVNGIWQIKCDY 190 >ref|NP_049985.1|putative lysin Length = 288 Score = 32.3 bits (72), Expect = 0.22 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 7/79 (8%) Frame = -1 Query: 2124 MGCQGKTIAMPGQRVRGFPAIKAYPVVERYGFIWVW------PGDAAQADEAKIPHM-AW 1966 + C T GQ + +P Y + +I VW P QA+ A P A+ Sbjct: 120 ISCDYSTQGAAGQAINTYPWNDYYEA-NKPAYIEVWRYSESAPQTKNQANTAVTPQQKAY 178 Query: 1965 YDNPEWAYGGGLYHINCDY 1909 Y+ E Y G++ I CDY Sbjct: 179 YEANEVKYVNGIWQIKCDY 197 >ref|NP_049942.1|lysin Length = 288 Score = 32.3 bits (72), Expect = 0.22 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 7/79 (8%) Frame = -1 Query: 2124 MGCQGKTIAMPGQRVRGFPAIKAYPVVERYGFIWVW------PGDAAQADEAKIPHM-AW 1966 + C T GQ + +P Y + +I VW P QA+ A P A+ Sbjct: 120 ISCDYSTQGAAGQAINTYPWNDYYEA-NKPAYIEVWRYSESAPQTKNQANTAVTPQQKAY 178 Query: 1965 YDNPEWAYGGGLYHINCDY 1909 Y+ E Y G++ I CDY Sbjct: 179 YEANEVKYVNGIWQIKCDY 197 >ref|NP_056699.1|lysin Length = 288 Score = 32.0 bits (71), Expect = 0.29 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 7/77 (9%) Frame = -1 Query: 2118 CQGKTIAMPGQRVRGFPAIKAYPVVERYGFIWVW------PGDAAQADEAKIPHM-AWYD 1960 C T GQ + +P Y + +I VW P QA+ A P A+Y+ Sbjct: 122 CDYSTQGAAGQAINTYPWNDYYEA-NKPAYIEVWRYSESAPQTKNQANTAVTPQQKAYYE 180 Query: 1959 NPEWAYGGGLYHINCDY 1909 E Y G++ I CDY Sbjct: 181 ANEVKYVNGIWQIKCDY 197 >ref|NP_038345.1|ORF44 Length = 281 Score = 31.2 bits (69), Expect = 0.50 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 7/79 (8%) Frame = -1 Query: 2124 MGCQGKTIAMPGQRVRGFPAIKAYPVVERYGFIWVWP-GDAA-----QADEAKIPH-MAW 1966 + C T GQ + +P Y + +I VW D+A QA+ A P A+ Sbjct: 113 ISCDYSTQGAVGQAINTYPW-NDYYAANKPAYIEVWRYSDSATQTNNQANTAVAPQEKAY 171 Query: 1965 YDNPEWAYGGGLYHINCDY 1909 Y+ E Y G++ I CDY Sbjct: 172 YEANEVKYVNGIWQIKCDY 190 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,808,953 Number of Sequences: 14420 Number of extensions: 248088 Number of successful extensions: 783 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 695 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 783 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1093658943 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig146 (2243 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_861945.1|gp38 distal long tail fiber assembly catalyst 33 0.17 >ref|NP_861945.1|gp38 distal long tail fiber assembly catalyst Length = 257 Score = 32.7 bits (73), Expect = 0.17 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = -1 Query: 1931 RCSDAGRV-----IVGGLATAQDDVAVFIAFG-LHDRHLTILVHGQKVVRAGGGLNRVGG 1770 RC +AG I G L + DV +F +G + ++T+ +HG + GG V G Sbjct: 64 RCFEAGSAPIVFNITGNLVSYSKDVPLFFMYGDTPNEYVTLNIHGGVHMWGRGGNGTVNG 123 Query: 1769 DPDVAIGAVLE 1737 +P G V++ Sbjct: 124 NPGTNGGDVIQ 134 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,492,752 Number of Sequences: 14420 Number of extensions: 233380 Number of successful extensions: 734 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 678 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 733 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1075513772 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig150 (2061 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_040655.1|unknown protein 191 3e-49 ref|NP_039614.1|gene IV product 101 3e-22 ref|NP_040579.1|G IV protein 101 4e-22 ref|NP_047359.1|maturation protein 99 2e-21 ref|NP_510894.1|phage assembly protein 94 6e-20 ref|NP_047372.1|putative maturation protein 88 4e-18 >ref|NP_040655.1|unknown protein Length = 430 Score = 191 bits (484), Expect = 3e-49 Identities = 127/437 (29%), Positives = 216/437 (49%), Gaps = 5/437 (1%) Frame = +1 Query: 115 YSGQKLSLNFQNIEVRSLLQVIADFTNFNIITSDSVNGSVTLRLQDVPWDQALDIILQAK 294 ++ +L++ I++R + ++ADF +++ S+ G V+L DVP QA D++L++ Sbjct: 19 FASDRLTVKHHEIDIRVAIPLVADFCGRSVVLGPSIQGVVSLDFDDVPCSQAFDLLLESN 78 Query: 295 GLGMRKTGNVLWIAPKDEINAKEKLELESVASLQSLEPLRTQSFQLN--YTKAADVXXXX 468 L G+VL I D++ L S L R F N + ++ Sbjct: 79 HLLSSMVGDVLVITAMDQV-------LNSERKADDLRTFRRDLFNANDIERRVINIVHAS 131 Query: 469 XXXXXXXXXNSSRMLSPRGSTIS-EARTNQLFVTDIPSKLEQVQQLIAKLDIPVRQVLIE 645 S L G +++ + RTN +F S ++ +I +D+PVRQV IE Sbjct: 132 ASEVVSLFKESFMSLDAPGMSMTVDERTNSVFAALPSSFFPALESVIQAIDVPVRQVAIE 191 Query: 646 ARIVEASDTFGKSLGVKLGGNDLRAQRGGDGGYQLSGDNRVAFGTSYGNXXXXXXXXXXX 825 A +VEAS + K LG+ GG A G+ +GD VA G+S G Sbjct: 192 ANVVEASVDWSKRLGLNWGG----ALSLGNWSAVTAGDLSVAAGSSIG-----------F 236 Query: 826 DLTSNFVNLPAVGQGGYNPATFALSIFSSAANRFLNLELSALEADGKGKVVSSPRVVTAD 1005 SN ++L + +A+E +G G+VVS P ++T D Sbjct: 237 GFLSNTLSLDGL--------------------------FTAMENEGNGRVVSRPTLLTLD 270 Query: 1006 QIKALIEQGTELPYQVASSSGATAIAFRKANLKLEVTPQITPEGNIILDLDVNKDTVGQS 1185 + A + +GTELPYQ ++ GAT++AF+ A L LEV P I+P+ +I++++ V++D+ S Sbjct: 271 RQSASVLRGTELPYQQSAGDGATSVAFKHAALSLEVKPVISPDNSIVIEVLVSRDSPNFS 330 Query: 1186 TAAGFA--INTKHIKTQVLVENGGTVVIGGIFELTESDNETKVPFLGDLPGVGNLFKTRG 1359 A I+T + T + V +G TVV+GG++ ++V + +PG+G LFK + Sbjct: 331 NAIDGVPPIDTNRLVTTIRVPHGQTVVLGGVYSTINQQGSSRVSGISRIPGIGRLFKKKE 390 Query: 1360 RVSNKQEMLVFITPKVV 1410 V+ + E+L+F+TP+++ Sbjct: 391 HVTEQYELLIFLTPRIL 407 >ref|NP_039614.1|gene IV product Length = 428 Score = 101 bits (252), Expect = 3e-22 Identities = 101/451 (22%), Positives = 179/451 (39%), Gaps = 26/451 (5%) Frame = +1 Query: 136 LNFQNIEVRSLLQVIADFTNFNIITSDSVNGSVTLRLQDVP---WDQALDIILQAKGLGM 306 + N VRS +Q + T ++I + V G++T+ DV D +L A GL + Sbjct: 25 VTLNNSPVRSFVQWYSSKTGKSVIVNPDVKGNITVFNADVNNANIDDFFKSVLNANGLVV 84 Query: 307 RKTGNVLWIAPKDEINAKEKLE---------LESVASLQSLEP-----LRTQSFQLNYTK 444 + P ++ ++ E + A QS P L ++F + + Sbjct: 85 VAGNPAVVSTPLTKLASQPSNEETYDDESDGVAYEAVPQSAAPAVPADLTVRNFNVTRVR 144 Query: 445 AADVXXXXXXXXXXXXXNSSRMLSPRGSTISEARTNQLFVTDIPSKLEQVQQLIAKLDIP 624 ++DV G+ + N L V+ + + I +D+ Sbjct: 145 SSDVLPLAKIFVDSNGG---------GNVVDYPGNNSLVVSGSAQVMPALSDFITSIDVA 195 Query: 625 VRQVLIEARIVEASDTFGKSLGVKLGGNDLRAQRGGDGGYQLSGDNRVAFGTSYGNXXXX 804 QVLI++ + E S + G L L GG G N A GT+ Sbjct: 196 REQVLIQSLMFETSVSNGVDLSFALAL--------ASGGKVAGGFNTSALGTALSTA--- 244 Query: 805 XXXXXXXDLTSNFVNLPAVGQGGYNPATFALSIFSSAANRFLNLELSALEADGKGKVVSS 984 GG + IF+ L L L A+++D KV+S+ Sbjct: 245 ---------------------GG------SFGIFNG---NILALSLQAVQSDSNSKVIST 274 Query: 985 PRVVTADQIKALIEQGTELPYQVASSSGATA--------IAFRKANLKLEVTPQITPEGN 1140 PR++T I G +P+ +G A I R + L+VTP + G Sbjct: 275 PRILTQSGQSGYISVGQNVPFVTGKVTGEAASVNNPFQTIERRDVGVSLKVTPVVMGNGQ 334 Query: 1141 IILDLDVNKDTVG-QSTAAGFAINTKHIKTQVLVENGGTVVIGGIFELTESDNETKVPFL 1317 ++L +D D++ Q+ A+ N + I+T V +++G T+++GG+ + D++ VPF+ Sbjct: 335 LVLTIDTKADSLSNQAIASDIITNQRQIQTTVQIKDGQTLLLGGLISSNQFDSDRSVPFM 394 Query: 1318 GDLPGVGNLFKTRGRVSNKQEMLVFITPKVV 1410 +P +G LF++ + + M V +T V+ Sbjct: 395 SKIPLIGWLFRSHSDSKDDRTMFVLLTAHVI 425 >ref|NP_040579.1|G IV protein Length = 437 Score = 101 bits (251), Expect = 4e-22 Identities = 103/470 (21%), Positives = 183/470 (38%), Gaps = 32/470 (6%) Frame = +1 Query: 97 LTQGPGYSGQKLSLNFQNIEVRSLLQVIADFTNFNIITSDSVNGSVTLRLQDVPWDQALD 276 +T G ++ +N N VRS +Q + +N ++ + V G++T+ DV D Sbjct: 20 MTLGIAFNVLADPVNLNNAPVRSFVQWYSQKSNKAVVVNPDVKGNITVFNADVNQANIDD 79 Query: 277 IILQAKGLGMRKTGNVLWIAPKDEINAKEKLELESV--------------------ASLQ 396 + G VL ++ KL + S Q Sbjct: 80 FFKSV----LNANGFVLMAGDPSGVSTPSKLPSQQTDNDDDYEDSADYVPVGDSVPVSAQ 135 Query: 397 SLEPL--RTQSFQLNYTKAADVXXXXXXXXXXXXXNSSRMLSPRGSTISEARTNQLFVTD 570 +PL ++F+L +++DV G I N L V+ Sbjct: 136 PQKPLDLTVRNFKLTRVRSSDVLPLAKIFVDSNGG---------GDVIDYPGNNSLLVSG 186 Query: 571 IPSKLEQVQQLIAKLDIPVRQVLIEARIVEASDTFGKSLGVKLGGNDLRAQRGGDGGYQL 750 + + + I +D+ QVLI++ + E S + G DL G G ++ Sbjct: 187 SAAIMNALADFITSIDVARDQVLIQSLMFETS---------LVNGVDLSFAAGSASGDKV 237 Query: 751 SGD-NRVAFGTSYGNXXXXXXXXXXXDLTSNFVNLPAVGQGGYNPATFALSIFSSAANRF 927 +G N A GT+ GG + IF+ Sbjct: 238 AGGFNTSALGTALSTA------------------------GG------SFGIFNG---NV 264 Query: 928 LNLELSALEADGKGKVVSSPRVVTADQIKALIEQGTELPYQVASSSGATA--------IA 1083 L L + A++ D KV+S+PR++T I G +P+ +G A I Sbjct: 265 LALSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQNVPFVTGKVTGEAANVNNPFQTIE 324 Query: 1084 FRKANLKLEVTPQITPEGNIILDLDVNKDTV-GQSTAAGFAINTKHIKTQVLVENGGTVV 1260 R + L+VTP + G ++L +D D++ Q TA+ N +H++T V +++G T++ Sbjct: 325 RRDVGVSLKVTPVVMGNGQLVLTIDTKADSLTSQMTASDIITNQRHMQTTVQIKDGQTLL 384 Query: 1261 IGGIFELTESDNETKVPFLGDLPGVGNLFKTRGRVSNKQEMLVFITPKVV 1410 +GG+ + +D VP+ +P +G LF++ N++ M V +T V+ Sbjct: 385 LGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNERTMFVLLTAHVI 434 >ref|NP_047359.1|maturation protein Length = 429 Score = 98.6 bits (244), Expect = 2e-21 Identities = 105/458 (22%), Positives = 180/458 (39%), Gaps = 31/458 (6%) Frame = +1 Query: 130 LSLNFQNIEVRSLLQVIADFTNFNIITSDSVNGSVTLRLQDVPWD---QALDIILQAKGL 300 + + N VR + + T +I S V G +T+ DV D Q +L+A G Sbjct: 19 IPVELNNAPVREFVSWYSKTTGKPVIISPDVKGEITVYSADVTKDELPQFFTSVLRANGF 78 Query: 301 GMRKTGNVLWIAPKDEINAKEKLELES----VASLQSLEP---------------LRTQS 423 + GN + K N E + S +S P L TQ+ Sbjct: 79 DL-SPGNPA-VVQKFNRNTYEYSDSFSEPVPASSYDGDVPPPTGDFFTKPEIRANLITQT 136 Query: 424 FQLNYTKAADVXXXXXXXXXXXXXNSSRMLSPRGSTISEARTNQLFVTDIPSKLEQVQQL 603 + +N +A D+ +++ G L VT S+ +++ Sbjct: 137 YPVNNVRAKDLAPVIDIFLKGENIAGTKVYPLMGRIF-------LLVTASASQHKELAAF 189 Query: 604 IAKLDIPVRQVLIEARIVEASDTFGKSLGVKLGGNDLRAQRGGDGGYQLSGDNRVAFGTS 783 +D+P QVL+E+ I E + + G G GG ++ D + +S Sbjct: 190 FPSVDVPRTQVLVESVIFETTASDGFDFSFAAGDPSGSPVAGG-----INTDRLTSVLSS 244 Query: 784 YGNXXXXXXXXXXXDLTSNFVNLPAVGQGGYNPATFALSIFSSAANRFLNLELSALEADG 963 G + IF+ L L L ALE Sbjct: 245 TGG---------------------------------SFGIFNG---NILGLSLKALETSS 268 Query: 964 KGKVVSSPRVVTADQIKALIEQGTELPYQVASSSGATA--------IAFRKANLKLEVTP 1119 K ++S PR++T G +P+ +G A I + L+V P Sbjct: 269 KSTLLSMPRILTMSGQPGTFTAGQNVPFVTGRVTGEAANVNNPFQTIERHDVGISLKVVP 328 Query: 1120 QITPEGNIILDLDVNKDTVGQS-TAAGFAINTKHIKTQVLVENGGTVVIGGIFELTESDN 1296 +TP G +I+D+ N D++ S TA+ NT+ I T V +++G TV++GG+ + ESD+ Sbjct: 329 VVTPGGLLIMDVSTNADSISDSQTASDIITNTRSISTTVQLKSGQTVLLGGMVDNRESDS 388 Query: 1297 ETKVPFLGDLPGVGNLFKTRGRVSNKQEMLVFITPKVV 1410 ++ VP++ +P +G LF ++ +NK+ + + I +VV Sbjct: 389 DSSVPWVSKIPLIGALFTSKSSNANKRTLYILIRARVV 426 >ref|NP_510894.1|phage assembly protein Length = 426 Score = 94.0 bits (232), Expect = 6e-20 Identities = 108/458 (23%), Positives = 181/458 (39%), Gaps = 33/458 (7%) Frame = +1 Query: 136 LNFQNIEVRSLLQVIADFTNFNIITSDSVNGSVTLRLQDVPWDQALDI---ILQAKGLGM 306 + N +R + + + ++I S V G+VT+ DV + + +L+A M Sbjct: 24 IEMNNSPLRDFVTWYSKQSGESVIVSPDVKGTVTVYSSDVKPENLRNFFISVLRANNFDM 83 Query: 307 RKTGNVLWIAPK---------DEINAKEKLELE--SVASLQSLEPLR---TQSFQLNYTK 444 G++ I K DE+ + + E + S S P TQ+F++N + Sbjct: 84 --VGSIPSIIQKYNPNNQDYIDELPSSDNQEYDDNSAPSGGFFVPQNDNVTQTFKINNVR 141 Query: 445 AADVXXXXXXXXXXXXXNSSRMLSPRGSTISEARTNQLFVTDIPSKLEQVQQLIAKLDIP 624 A D+ SS +LS GS N L V+ L+ + Q ++ +D+P Sbjct: 142 AKDLIRVVELFVKSNTSKSSNVLSIDGS-------NLLVVSAPKDILDNLPQFLSTVDLP 194 Query: 625 VRQVLIEARIVEASDTFGKSLGVKLGGNDLRAQRGGDGGYQLSGDNRVAFGTSYGNXXXX 804 Q+LIE I E G +L D A G+ G Sbjct: 195 TDQILIEGLIFEVQQ--GDAL-----------------------DFSFAAGSQRGTVA-- 227 Query: 805 XXXXXXXDLTSNFVNLPAVGQGGYNPATFALSIFSSAANRF-------LNLELSALEADG 963 GG N S+ SSA F L L + AL+ + Sbjct: 228 ---------------------GGVNTDRLT-SVLSSAGGSFGIFNGDVLGLSVRALKTNS 265 Query: 964 KGKVVSSPRVVTADQIKALIEQGTELPYQVASSSGATA--------IAFRKANLKLEVTP 1119 K++S PR++T K I G +P+ +G +A I + + + V P Sbjct: 266 HSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFP 325 Query: 1120 QITPEGNIILDLDVNKDTVGQSTAAGFAI-NTKHIKTQVLVENGGTVVIGGIFELTESDN 1296 GNI+LD+ D++ ST A I N + I T V + +G T+++GG+ + + Sbjct: 326 VAMAGGNIVLDITSKADSLSSSTQASDVITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQ 385 Query: 1297 ETKVPFLGDLPGVGNLFKTRGRVSNKQEMLVFITPKVV 1410 ++ VPFL +P +G LF +R + + + V + +V Sbjct: 386 DSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIV 423 >ref|NP_047372.1|putative maturation protein Length = 500 Score = 87.8 bits (216), Expect = 4e-18 Identities = 102/420 (24%), Positives = 175/420 (41%), Gaps = 14/420 (3%) Frame = +1 Query: 190 TNFNIITSDSVNGSVTLRLQDV---PWDQALDIILQAKGLGMRKTGN--VLWIAPKDEIN 354 T ++ V GSV+ D+ + D +L+A G + K GN V+ IAP+ Sbjct: 86 TGIKVVLGQGVLGSVSFTAPDLVPAEYPAFFDSVLRAHGYYLVKDGNAYVIKIAPE---- 141 Query: 355 AKEKLELESVASLQSLEPLRTQSFQLNY---TKAADVXXXXXXXXXXXXXNSSRMLSPRG 525 AKE + P + ++ NY +K +D+ ++ Sbjct: 142 AKEVIT-----------PAIVKLYRFNYIRNSKLSDLVQSTLKATSSEFVKDKQV--DNY 188 Query: 526 STISEARTNQLFVTDIPSKLEQVQQLIAKLDIPVRQVLIEARIVEASDTFGKSLGVKLGG 705 S TN L V+ +LE++ L++ +D+P RQ+ IEA I E LGV L Sbjct: 189 SVEILPNTNALIVSGTAQQLEKLDVLLSAIDVPQRQIFIEAVITETELGDNSELGVNL-- 246 Query: 706 NDLRAQRGGDGGYQLSGDNRVAFGTSYGNXXXXXXXXXXXDLTSNFVNLPAVGQGGYNPA 885 + AF + +N VN + Sbjct: 247 -------------------QAAFDKA--------------GFVTNLVNASKLKDN----- 268 Query: 886 TFALSIFSSAANRFLNLELSALEADGKGKVVSSPRVVTADQIKALIEQGTELPYQVASSS 1065 L IF S N + A+ +++S P ++ D+ + I G +P+ V++S+ Sbjct: 269 ---LFIFESGD---FNALVKAISGSSDTRLLSRPNILIMDRERGYITVGQNVPFLVSNST 322 Query: 1066 --GATA---IAFRKANLKLEVTPQITPEGNIILDLDVNKDTVGQST-AAGFAINTKHIKT 1227 G T+ I + + LEVTP + + ++IL ++ +V ST AA N + + T Sbjct: 323 TDGGTSVQRIERKDVGVSLEVTPHVMGD-DVILVINQESSSVTDSTIAADIITNKRTLMT 381 Query: 1228 QVLVENGGTVVIGGIFELTESDNETKVPFLGDLPGVGNLFKTRGRVSNKQEMLVFITPKV 1407 V V++G T+V+GG+ + + E+ VP L D P +G LF++ + ++E+ V I V Sbjct: 382 TVAVKSGQTIVLGGLISDEKRNVESGVPVLKDTPLIGGLFRSTSTKNVQKELRVVIKSTV 441 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,598,072 Number of Sequences: 14420 Number of extensions: 220920 Number of successful extensions: 711 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 651 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 704 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 985076752 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig154 (2156 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_049937.1|tail-host specificity protein 32 0.28 ref|NP_064768.1|gp29 32 0.36 ref|NP_612899.1|hypothetical protein 31 0.47 >ref|NP_049937.1|tail-host specificity protein Length = 1291 Score = 32.0 bits (71), Expect = 0.28 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = -3 Query: 972 GPVADRGLPQPAGP--ERGRRHPQRPRTAAAAEQSAPDPRG 856 GP +RGL P GP +RG R Q PR +Q P P+G Sbjct: 787 GPQGERGLTGPQGPKGDRGERGLQGPR----GDQGIPGPKG 823 >ref|NP_064768.1|gp29 Length = 190 Score = 31.6 bits (70), Expect = 0.36 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 8/115 (6%) Frame = -3 Query: 471 PVSHHLAASKAFDRVVGALPVTPTADKIRRLMHYGQVMQSHALHFFYLAAPDLLFGFDSE 292 P+ HL A+ AF T D + + + + V SH F L +P+L F +D Sbjct: 41 PIHRHLGAATAFSST-SPYAYTIDTDTVEKFLSF-PVSSSHVEGFTVLTSPNLRFRYDDP 98 Query: 291 VNRRNIVGVAQAHPDIARKGVLLR----KFGQELIRATAGKRVH----GSGSVPG 151 +++ V + G ++ K G E++ + A + + GS SV G Sbjct: 99 TEITSLINVTMSSSQAGGVGHAVQWALFKNGVEIVGSRAIRTISSGSWGSISVTG 153 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 31.2 bits (69), Expect = 0.47 Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Frame = -3 Query: 972 GPVADRGLPQPAGP--ERGRRHPQRPRTAAAAEQSAPDPRG 856 G RG P PAGP ERG PQ P A E+ PRG Sbjct: 365 GDTGPRGEPGPAGPRGERGETGPQGP-MGARGERGETGPRG 404 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,563,300 Number of Sequences: 14420 Number of extensions: 206101 Number of successful extensions: 719 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 649 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 718 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 1038324144 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig156 (2141 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_932553.1|dCMP deaminase 32 0.21 ref|YP_164319.1|hypothetical protein 32 0.27 >ref|NP_932553.1|dCMP deaminase Length = 172 Score = 32.3 bits (72), Expect = 0.21 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +1 Query: 619 LDGCELFVTLEPCAMCVGAMLHARLQRVVY 708 +DG E++VT+ PC C A+ + +++V Y Sbjct: 101 IDGAEMYVTVSPCRECAKAIAQSGIKKVFY 130 >ref|YP_164319.1|hypothetical protein Length = 116 Score = 32.0 bits (71), Expect = 0.27 Identities = 17/54 (31%), Positives = 22/54 (40%) Frame = +2 Query: 647 WSPVPCASVPCCTRACSVWCTGRPTPRQVPPGQFLICSPIRS*TTTPKCRVACW 808 W P A A W + RP R P F+ C+ + TP CR+ CW Sbjct: 63 WIRQPSAMRRATGSAPGCWWSIRPRQRIASPAPFVSCTSM-----TPWCRMGCW 111 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,578,426 Number of Sequences: 14420 Number of extensions: 209012 Number of successful extensions: 575 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 537 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 574 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 1030004239 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig162 (2029 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164322.1|hypothetical protein 32 0.20 >ref|YP_164322.1|hypothetical protein Length = 675 Score = 32.3 bits (72), Expect = 0.20 Identities = 23/77 (29%), Positives = 36/77 (46%) Frame = -2 Query: 1488 TPAPDISSEDALRQAVLAAPTLSYSTGPSGVALARLFERWGIAERIKDRIVTAPPGVPVG 1309 T PD S D++RQA L A + Y P+G AR + ++ DR T+ + Sbjct: 455 TVVPDSSRADSVRQAALNAASTPYRGSPNGQLTARQIDNLFGLQQSDDRNATS-----LA 509 Query: 1308 SLVAKGEVALGFQQLSE 1258 S A + AL +Q+ + Sbjct: 510 STRANNDTALVREQVQQ 526 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,799,010 Number of Sequences: 14420 Number of extensions: 197171 Number of successful extensions: 753 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 683 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 748 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 966772961 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig166 (2704 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945089.1|gp58 35 0.032 ref|YP_115515.1|integrase 35 0.041 >ref|NP_945089.1|gp58 Length = 297 Score = 35.4 bits (80), Expect = 0.032 Identities = 30/106 (28%), Positives = 47/106 (44%) Frame = +2 Query: 1991 RIIPSMETKWLEDFVSLAETRSFSRSAQLRHVTQPAFSRRIQSLETWAGTDLVDRSNYPT 2170 +I P + L F + A +F+R+A+ +V Q A S+++ LET+ GT L R Sbjct: 2 KIQPLPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKAL 61 Query: 2171 RLTPGGETLYAQSLEVLQALQSTRAMLRGHASAGQDVIEFAVPHTL 2308 LT G+ Q A+L A V++ PH+L Sbjct: 62 HLTRAGQ----------QYADRVHAILADCVEATALVMKEQTPHSL 97 >ref|YP_115515.1|integrase Length = 427 Score = 35.0 bits (79), Expect = 0.041 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Frame = +3 Query: 2496 SVWAKRWWRLMPNRMQTVRRCFCCQGDGANPCRT-WATRLAPNWGRW 2633 S W K WW P+R T AN R+ WA + P WG+W Sbjct: 97 SQWWKLWWEAQPDRAVTT----------ANRKRSNWAAHIEPKWGQW 133 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,796,523 Number of Sequences: 14420 Number of extensions: 319611 Number of successful extensions: 1057 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 963 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1056 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1314653364 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig168 (2023 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,562,857 Number of Sequences: 14420 Number of extensions: 264792 Number of successful extensions: 860 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 782 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 859 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 963444999 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig171 (2009 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817384.1|gp46 37 0.010 >ref|NP_817384.1|gp46 Length = 436 Score = 36.6 bits (83), Expect = 0.010 Identities = 25/63 (39%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Frame = -1 Query: 1265 VHPPNGGW-KINWWSQSVTRNVL*CGS*FLSSQFASAPALAPWPAGVWGCGSTRAQCCHW 1089 V P GW I W QS TR V CG S P P W CG TRA C Sbjct: 222 VDNPAQGWITIAWQLQSETR-VHGCGDPLPEPSPLSRPDRMPKKPPYWPCGKTRAWACPQ 280 Query: 1088 ARW 1080 +RW Sbjct: 281 SRW 283 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,895,790 Number of Sequences: 14420 Number of extensions: 228984 Number of successful extensions: 783 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 719 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 782 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 956789075 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig174 (2185 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,380,727 Number of Sequences: 14420 Number of extensions: 235877 Number of successful extensions: 747 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 681 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 746 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1042522552 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig176 (2518 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,156,037 Number of Sequences: 14420 Number of extensions: 307358 Number of successful extensions: 841 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 784 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 841 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1213274622 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig177 (2012 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,693,455 Number of Sequences: 14420 Number of extensions: 228103 Number of successful extensions: 717 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 658 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 716 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 958453056 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig180 (2646 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,055,700 Number of Sequences: 14420 Number of extensions: 297871 Number of successful extensions: 1023 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 892 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1023 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1283585685 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig181 (2347 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_543108.1|putative tail fiber protein 37 0.009 ref|NP_958267.1|hypothetical protein 35 0.047 ref|NP_064745.1|gp7 32 0.23 ref|YP_006601.1|Gp21 32 0.23 ref|NP_918983.1|putative tail fiber protein 32 0.30 >ref|NP_543108.1|putative tail fiber protein Length = 490 Score = 37.0 bits (84), Expect = 0.009 Identities = 30/115 (26%), Positives = 50/115 (43%) Frame = -1 Query: 1090 AEPGEAASLAQSVAHGDLSQSIGLKTGDTHSMMAQFRIMQESLSEVVGSVRQGAESVATA 911 + PG ++ GDL + + + M+AQ Q+S S RQ + A A Sbjct: 81 SRPGTLNDFLTALDEGDLKPDVVKRFEE---MVAQ---AQQSAEAAAESERQAGQHAADA 134 Query: 910 SVQIAQGNHDLSARTESQASVLEETAASMEQLGSQVKQNADSARQANQLALNAST 746 +I L+ + + +EE +EQL SQV+ A+ RQ + A A++ Sbjct: 135 Q-KIKGDCQTLADNVQQNTNAVEENTQRVEQLASQVEDTAEEVRQDAEAAKQAAS 188 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 34.7 bits (78), Expect = 0.047 Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 7/65 (10%) Frame = -3 Query: 1508 RRWVFPRIS----RNSGLSVAKDQ*RVRCRPSPGAA---RRRHGPQRPRQWENTVQDDRH 1350 RR V PR+ R G + RVR RP PGAA RRR P+ PR + R Sbjct: 169 RRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRR 228 Query: 1349 WRRRS 1335 RRR+ Sbjct: 229 HRRRA 233 >ref|NP_064745.1|gp7 Length = 540 Score = 32.3 bits (72), Expect = 0.23 Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 1/115 (0%) Frame = -1 Query: 553 ATEVRSLAGRSAEAAKEIKSLINASVERVEQGTVLVDQAGSTMQEVVSSIKRVTDIMGEI 374 A+E + A +A A S +AS V + + E ++ T G Sbjct: 124 ASETAASASATASATSATNSATSASQAATSASAAAVSEGNAATSET-NAANSATSASGSA 182 Query: 373 STASAEQS-IGVAQVGEAISQMDQVTQQNASLVEEMAAAADSLKSQAQELVQTVS 212 STA+ + S V+ A S + T + + AAA + A E T S Sbjct: 183 STATTQASAASVSATNAATSASNAATSATNAAASQAAAATSETNAAASESTVTTS 237 >ref|YP_006601.1|Gp21 Length = 3433 Score = 32.3 bits (72), Expect = 0.23 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 6/100 (6%) Frame = -1 Query: 556 VATEVRSLAGRSAEAAKEIKSLIN-----ASVERVEQGTVLVDQAGSTMQEVVSSIKRVT 392 VA E+ S++ + A +I L A V+ T V+Q G+T+ +++ ++ Sbjct: 1256 VADELSSISTAQSAQASKISGLETSLGKKADASAVQSLTQKVEQQGTTLTSQGNTLTSLS 1315 Query: 391 DIMGEISTASAEQSIGVAQVGEAISQM-DQVTQQNASLVE 275 + +G+ + A S + + +SQ D++T Q SL + Sbjct: 1316 NRVGKTESGVAANSSAITGLQSTVSQQGDKLTSQGQSLTK 1355 >ref|NP_918983.1|putative tail fiber protein Length = 830 Score = 32.0 bits (71), Expect = 0.30 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 3/94 (3%) Frame = -1 Query: 511 AKEIKSLINASV---ERVEQGTVLVDQAGSTMQEVVSSIKRVTDIMGEISTASAEQSIGV 341 A+E+ L A+ E+ T V +AG +Q + +T M E+S A+ + Sbjct: 139 ARELDKLAAAAAGGGRDFERLTQRVAKAGQDVQAANARTASLTKSMAELSGLEAQVAEQA 198 Query: 340 AQVGEAISQMDQVTQQNASLVEEMAAAADSLKSQ 239 QV +A++Q Q TQ AAAAD L ++ Sbjct: 199 EQVAKAMNQQAQATQA-------AAAAADRLNAR 225 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,694,598 Number of Sequences: 14420 Number of extensions: 272591 Number of successful extensions: 917 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 828 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 916 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1131598846 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig184 (2672 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,586,527 Number of Sequences: 14420 Number of extensions: 287523 Number of successful extensions: 1007 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 891 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1006 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1298301954 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig185 (2385 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_024689.1|gp16 49 2e-06 ref|YP_164053.1|hypothetical protein 40 0.001 >ref|YP_024689.1|gp16 Length = 80 Score = 49.3 bits (116), Expect = 2e-06 Identities = 21/48 (43%), Positives = 33/48 (68%) Frame = +3 Query: 1086 DFRAHGINLAAWAREKGFNPQLVYLVARGERKCLRGQSHIIAKELGMK 1229 + ++ GI++ WA F+P LV+ V G +KC+RGQ+H IA +LG+K Sbjct: 12 ELQSKGISITQWAIANKFSPNLVFEVLGGRKKCVRGQAHEIAVKLGLK 59 >ref|YP_164053.1|hypothetical protein Length = 69 Score = 40.0 bits (92), Expect = 0.001 Identities = 20/47 (42%), Positives = 26/47 (55%) Frame = +3 Query: 1089 FRAHGINLAAWAREKGFNPQLVYLVARGERKCLRGQSHIIAKELGMK 1229 FR G WA+E G+ VY V G+ K GQ+H IA +LG+K Sbjct: 17 FRQAGKTFTEWAKENGYARNDVYRVLNGQLKANYGQAHEIAVKLGLK 63 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,114,219 Number of Sequences: 14420 Number of extensions: 277442 Number of successful extensions: 662 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 631 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 661 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1153043139 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig187 (2289 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,609,987 Number of Sequences: 14420 Number of extensions: 233547 Number of successful extensions: 763 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 718 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 762 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1100257187 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig188 (2255 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_665964.1|putative plasmid partitioning protein Soj 50 1e-06 ref|NP_758949.1|ORF58 36 0.015 ref|YP_006528.1|ParA 32 0.38 ref|NP_955482.1|gp102 31 0.49 >ref|NP_665964.1|putative plasmid partitioning protein Soj Length = 256 Score = 49.7 bits (117), Expect = 1e-06 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 3/186 (1%) Frame = -2 Query: 1072 LTVCVINLKGGVGKSTISALLARYALSTRQRDVLAIDLDPQANLSQALMSSNYNSFLEER 893 + + V N KGG GK+T + +A AL+ DVL IDLDPQ + ++ L + + + Sbjct: 1 MRIGVTNQKGGAGKTTTTLNVAG-ALNQLGNDVLVIDLDPQGHATEGLGFEDL--YDDPE 57 Query: 892 RPSIVEIFNGYRPASPGASGSLLAPNTGVELITKVGANTLQLIPSR---FDFSDNLTNSL 722 R S+ ++ L + +L+ V + +PS + D L N + Sbjct: 58 RDSLFDVL-----------PELERMDELEQLV--VEHQEVDCVPSHETMINAEDALANVM 104 Query: 721 RPDPKVLARFLAGNFQHKDLIIIDCAPTESILTHAAYHASGLVLVPVKPEFFATIGFPLL 542 + + + L L D +++DC P +LT A A+G VL+P + + + LL Sbjct: 105 KREER-LEMLLDDADGRWDYVLVDCPPNLGVLTDNAIVATGNVLIPAQAKSTSIRAIELL 163 Query: 541 HESLES 524 + L S Sbjct: 164 FKQLRS 169 >ref|NP_758949.1|ORF58 Length = 210 Score = 36.2 bits (82), Expect = 0.015 Identities = 24/61 (39%), Positives = 34/61 (55%) Frame = -2 Query: 1126 YKNINQAGERAMARPNGPLTVCVINLKGGVGKSTISALLARYALSTRQRDVLAIDLDPQA 947 Y +IN+ E MA+ + ++N KGG GK+TIS +A L VL +DLDPQ Sbjct: 9 YAHINRE-ENEMAK-----LIAILNQKGGAGKTTISTNVAS-QLHADGHKVLLVDLDPQG 61 Query: 946 N 944 + Sbjct: 62 S 62 >ref|YP_006528.1|ParA Length = 398 Score = 31.6 bits (70), Expect = 0.38 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = -2 Query: 1066 VCVINLKGGVGK--STIS---ALLARYALSTRQRDVLAIDLDPQANLSQAL 929 + + NLKGGV K ST+S A+ A L +L IDLDPQ++ + L Sbjct: 111 IFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFL 161 >ref|NP_955482.1|gp102 Length = 92 Score = 31.2 bits (69), Expect = 0.49 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%) Frame = +2 Query: 1775 HFAAPAS---LCG*SCECPAAWNRWFRLC 1852 HF P S L G C C A W+RW +C Sbjct: 4 HFMIPGSHERLSGPECHCGAGWDRWNSIC 32 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,272,141 Number of Sequences: 14420 Number of extensions: 260765 Number of successful extensions: 803 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 759 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 799 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1082112016 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig190 (2703 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,591,185 Number of Sequences: 14420 Number of extensions: 346038 Number of successful extensions: 967 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 883 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 966 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1314653364 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig192 (2706 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,646,783 Number of Sequences: 14420 Number of extensions: 324619 Number of successful extensions: 1149 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 999 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1148 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1316288505 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig193 (2634 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,773,425 Number of Sequences: 14420 Number of extensions: 323531 Number of successful extensions: 1000 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 883 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1000 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1277045121 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig195 (1972 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_049768.1|gp10 baseplate wedge subunit and tail pin 33 0.11 ref|NP_861861.1|gp10 baseplate wedge subunit and tail pin 32 0.33 >ref|NP_049768.1|gp10 baseplate wedge subunit and tail pin Length = 602 Score = 33.1 bits (74), Expect = 0.11 Identities = 16/34 (47%), Positives = 24/34 (70%) Frame = -3 Query: 494 TLKDASVPVAINLAKFAGPEARYCPAGVYEFVKN 393 T+K ++VPV IN+ +F+ E YC G +E+VKN Sbjct: 116 TIKGSAVPVEINV-RFSDLELVYCAPGRWEYVKN 148 >ref|NP_861861.1|gp10 baseplate wedge subunit and tail pin Length = 604 Score = 31.6 bits (70), Expect = 0.33 Identities = 16/34 (47%), Positives = 23/34 (67%) Frame = -3 Query: 494 TLKDASVPVAINLAKFAGPEARYCPAGVYEFVKN 393 T+K +S PV IN+ +F+ E YC G +E+VKN Sbjct: 116 TIKGSSSPVEINV-QFSDLELVYCSPGRWEYVKN 148 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,614,961 Number of Sequences: 14420 Number of extensions: 225287 Number of successful extensions: 674 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 672 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 935157322 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig196 (2281 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,834,555 Number of Sequences: 14420 Number of extensions: 209769 Number of successful extensions: 762 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 697 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 762 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1095308504 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig197 (2000 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164268.1|hypothetical protein 37 0.010 ref|NP_536409.1|putative repressor protein 31 0.43 >ref|YP_164268.1|hypothetical protein Length = 68 Score = 36.6 bits (83), Expect = 0.010 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +1 Query: 1774 APFWSKR-CLAQRWKKWQRLTAWPPCSAGARVLRAATXRCFLTWPRP 1911 APF+ +R C A+ W+KW WPP S + RC+ WP P Sbjct: 20 APFFCRRTCAARCWRKWPPSATWPPSS-------TCSPRCW-AWPTP 58 >ref|NP_536409.1|putative repressor protein Length = 130 Score = 31.2 bits (69), Expect = 0.43 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -3 Query: 687 QRVEYPAGVGRATRDVDHRQPSSSPKVGTQQAA 589 +R+E AG R D+DH + S SPK G++ A Sbjct: 60 RRIEEAAGKPRGWLDIDHERNSPSPKAGSRTPA 92 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,072,604 Number of Sequences: 14420 Number of extensions: 202790 Number of successful extensions: 621 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 560 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 618 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 951797132 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig198 (2497 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 53 1e-07 ref|NP_852019.1|unknown 35 0.049 >ref|NP_046572.1|ABC transporter Length = 705 Score = 53.1 bits (126), Expect = 1e-07 Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 6/164 (3%) Frame = +3 Query: 222 HAVEKVSFDIRPGETLALVGESGCGKSTTGRSLLRLVESQSGVIEFGGQNIRNLPTSTLQ 401 + VE ++ + + + ++GESG GKST +SL +L + I G +I + Sbjct: 497 YIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLS-- 554 Query: 402 GLRRNIQFIFQDPF---ASLDPRLTVGFSIMEPLLVHKIAKGKQAQKRVDWLLEKVGLPA 572 +R+ I +I ++PF ++ L +G I + + Q + + L Sbjct: 555 -IRKRIVYIDENPFLFKGTIKENLCMG-EIFDQNEIENACIMSQCHEFI------CNLDK 606 Query: 573 EFAQRYPH---EFSGGQRQRVAIARALALNPKVVIADESVSALD 695 +++ + S GQ+QR+A+ARA+ P+V+I DES+S +D Sbjct: 607 QYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNID 650 >ref|NP_852019.1|unknown Length = 430 Score = 34.7 bits (78), Expect = 0.049 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 18/136 (13%) Frame = +1 Query: 1360 DLKIQPVLAESFTVSKDGLV---YTFKLRQGVKFHD------GTDFNAEAVKVTLDRV-- 1506 D+K+ P ++ DGL YT K+ + + D G+D E ++ ++ + Sbjct: 113 DVKVAPQSDNGLKITTDGLHVVDYTSKIAEIEQLIDEILTPEGSDVTMEQIRAMIENLSQ 172 Query: 1507 ----LNAENKLARTNQFNRIEKVEVES--PLTVRVTLKEPFAPFINSLAHASAVMMSPAA 1668 +A KL N R+ +++ PLT ++ L + + ++ + +M S A Sbjct: 173 EFGEADAGLKLQIDNMEKRLIALDIPDIDPLTQKIELLDADILGVKQISTYTEMMNSLAT 232 Query: 1669 L-KKYGSKDIAFNPVG 1713 + GSK I FNPVG Sbjct: 233 FGSREGSKAIRFNPVG 248 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,081,326 Number of Sequences: 14420 Number of extensions: 279404 Number of successful extensions: 908 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 816 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 908 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1201828635 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig200 (2710 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_064745.1|gp7 35 0.032 >ref|NP_064745.1|gp7 Length = 540 Score = 35.4 bits (80), Expect = 0.032 Identities = 47/207 (22%), Positives = 74/207 (35%), Gaps = 1/207 (0%) Frame = +1 Query: 1435 AHGQAMTSMTSAR*TQVNQSPPATNGGSAATAIAMPNTMGV*YVAKVSTKRCVGALEACA 1614 A A + +A +VN T G +ATA A T GA E A Sbjct: 83 AQAAAELAENNAETAEVNAEASETAAGLSATAAATSATN-------------AGASETAA 129 Query: 1615 SCTARTMRASVESFAGAVVRYATSPPWLMV-PANSGSPMDLSTGILSPVMXAWSTVVEPL 1791 S +A S + A + + ATS V N+ + + + + ST Sbjct: 130 SASATASATSATNSATSASQAATSASAAAVSEGNAATSETNAANSATSASGSASTATTQA 189 Query: 1792 TTWPSSAMRSPGRARTKVPMATPAAGTISQPSATFTVAVSEVIAIKPSTARLARSSDFAS 1971 + SA + A AT AA + + + + T A + + S A S A+ Sbjct: 190 SAASVSATNAATSASNAATSATNAAASQAAAATSETNAAASESTVTTSATNAATSEANAA 249 Query: 1972 IISATAKRNITMAASGHRPINTAPVTA 2052 ++TA T AA+ +T+ A Sbjct: 250 TSASTATTQATNAATSASTASTSATNA 276 Score = 34.7 bits (78), Expect = 0.054 Identities = 51/203 (25%), Positives = 74/203 (36%), Gaps = 1/203 (0%) Frame = +1 Query: 1408 TVTGVDITRAHGQAMTSMTSAR*TQVNQSPPATNGGSAATAIAMPNTMGV*YVAKVSTKR 1587 T T + A S TSA + S A + G+AAT+ T Sbjct: 127 TAASASATASATSATNSATSASQAATSASAAAVSEGNAATS---------------ETNA 171 Query: 1588 CVGALEACASCTARTMRASVESFAGAVVRYATSPPWLMVPA-NSGSPMDLSTGILSPVMX 1764 A A S + T +AS S + ATS A N+ + + + Sbjct: 172 ANSATSASGSASTATTQASAASV--SATNAATSASNAATSATNAAASQAAAATSETNAAA 229 Query: 1765 AWSTVVEPLTTWPSSAMRSPGRARTKVPMATPAAGTISQPSATFTVAVSEVIAIKPSTAR 1944 + STV T +S + A T AT AA + S S + T A A + A Sbjct: 230 SESTVTTSATNAATSEANAATSASTATTQATNAATSASTASTSATNA-----ATSETNAA 284 Query: 1945 LARSSDFASIISATAKRNITMAA 2013 + SS +S SA A ++ +AA Sbjct: 285 SSASSAASSATSAQASKDAALAA 307 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,262,105 Number of Sequences: 14420 Number of extensions: 301932 Number of successful extensions: 1066 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 947 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1064 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1317923646 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig201 (2571 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,127,292 Number of Sequences: 14420 Number of extensions: 274046 Number of successful extensions: 996 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 894 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 996 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1242707160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig202 (2155 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046584.1|putative transglycosylase 100 8e-22 ref|NP_040700.1|hypothetical protein 62 3e-10 ref|YP_024936.1|gp16 56 2e-08 ref|NP_944303.1|conserved phage mega protein 44 7e-05 ref|NP_813780.1|internal virion protein D 43 1e-04 ref|NP_052116.1|internal virion protein D 42 2e-04 ref|YP_164061.1|endolysin 41 5e-04 ref|NP_958680.1|Bbp11 40 0.001 ref|NP_996573.1|hypothetical protein predicted by GeneMark 40 0.001 ref|NP_996621.1|hypothetical protein predicted by GeneMark 40 0.001 ref|NP_848303.1|internal virion protein 38 0.004 ref|NP_523341.1|internal virion protein D 38 0.005 ref|NP_042004.1|internal virion protein D 37 0.007 ref|NP_958267.1|hypothetical protein 37 0.009 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 100 bits (248), Expect = 8e-22 Identities = 50/118 (42%), Positives = 72/118 (61%) Frame = -1 Query: 1507 KIFELVMKMAPQYQVQPQLALAIIAAESNFDSQALSPMNAQGLMQLIPETSQRFQVRNPF 1328 K + A +Y V P L A+I ES F+++A S + A GLMQL+P T++ V N + Sbjct: 1421 KYSSYINSAASKYNVDPALIAAVIQQESGFNAKARSGVGAMGLMQLMPATAKSLGVNNAY 1480 Query: 1327 DAAQNIRGGLAYLRWLLAYFEGDIVLVAAAYNAGEGKVERYRGVPPYQETRAYVQRIV 1154 D QN+ GG YL L F G++ AAYNAG G V +Y G+PP++ET+ YV++I+ Sbjct: 1481 DPYQNVMGGTKYLAQQLEKFGGNVEKALAAYNAGPGNVIKYGGIPPFKETQNYVKKIM 1538 >ref|NP_040700.1|hypothetical protein Length = 265 Score = 61.6 bits (148), Expect = 3e-10 Identities = 39/132 (29%), Positives = 66/132 (50%) Frame = -1 Query: 1501 FELVMKMAPQYQVQPQLALAIIAAESNFDSQALSPMNAQGLMQLIPETSQRFQVRNPFDA 1322 +E + + QY + P+L ++ ES+ + + S + A GLMQL+P T++ V N +D Sbjct: 8 WETIGAASAQYNLDPRLVAGVVQTESSGNPRTTSGVGAMGLMQLMPATAKSLGVTNAYDP 67 Query: 1321 AQNIRGGLAYLRWLLAYFEGDIVLVAAAYNAGEGKVERYRGVPPYQETRAYVQRIVRAVG 1142 QNI GG A LR L + GD+ AY+ G + +T++Y ++++ + Sbjct: 68 TQNIYGGAALLRENLDRY-GDVNTALLAYHGGTNQANW------GAKTKSYPGKVMKNIN 120 Query: 1141 TLAHPFDARVTP 1106 L VTP Sbjct: 121 LLFGNSGPVVTP 132 >ref|YP_024936.1|gp16 Length = 763 Score = 55.8 bits (133), Expect = 2e-08 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 3/131 (2%) Frame = -1 Query: 1465 VQPQLALAIIAAESNFDSQALSPMNAQGLMQLIPETSQRFQVRNPFDAAQNIRGGLAYLR 1286 V P+L LA+ A +S +SP A G+ Q++PE +++ V +P D Q + G YL Sbjct: 311 VPPELMLALKNAGEKSNSGQVSPKGAAGVSQMMPENLRKYGVTDPTDPMQALDGMAKYLA 370 Query: 1285 WLLAYFEGDIVLVAAAYNAGEGKVER-YRGV-PPYQETRAYVQRIVRAVGTLA-HPFDAR 1115 + G++ + A YN G + RG PP ET AY+ R+ + T Sbjct: 371 DTQKQYGGNLQAMIADYNGGPKQAAAVLRGERPPANETAAYLDRVNNYLATRGIDSATFH 430 Query: 1114 VTPPSPALALI 1082 VTP ALI Sbjct: 431 VTPEQVDAALI 441 >ref|NP_944303.1|conserved phage mega protein Length = 4602 Score = 43.9 bits (102), Expect = 7e-05 Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 10/128 (7%) Frame = -1 Query: 1492 VMKMAPQYQVQPQLALAIIAAES--NFDSQALSPMNAQGLMQLIPETSQRFQ--VRNPFD 1325 V + A + V P+ AL I ES NF ++ S A G MQ++P+T + D Sbjct: 71 VTRRAQELGVDPKFALEIFNLESSGNFGTRD-SNKGAVGGMQVMPDTYKAMMGTYAGQRD 129 Query: 1324 AAQNIRGGLAYLRWLLAYF-EGDIVLVAAAYNAGEGKVERYRGVPPY-----QETRAYVQ 1163 A N+ GL Y+ + D L+AA Y +G + RG P TRAY Sbjct: 130 AWNNLEAGLRYIAYGQKKLGTTDPALLAAGYQSGYDRASLKRGEIPNTTDGGMTTRAYAA 189 Query: 1162 RIVRAVGT 1139 RI VGT Sbjct: 190 RIASRVGT 197 >ref|NP_813780.1|internal virion protein D Length = 1392 Score = 43.1 bits (100), Expect = 1e-04 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%) Frame = -1 Query: 1438 IAAESNFDSQALSPMNAQGLMQLIPETSQRFQV---RNPFDAAQNIRGGLAYLRWLLAYF 1268 I ES+F+ A SP GL Q T + + + + D ++I Y R L+ + Sbjct: 39 IFIESSFNPDAKSPTGPLGLGQFTKATGKAYGLMTDEDRLDPIKSINASAQYTRDLMGTY 98 Query: 1267 EGDIVLVAAAYNAGEGKV 1214 +GD++ VA AYN G G++ Sbjct: 99 KGDMLKVALAYNQGNGRL 116 >ref|NP_052116.1|internal virion protein D Length = 1320 Score = 42.4 bits (98), Expect = 2e-04 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 7/124 (5%) Frame = -1 Query: 1534 VDYQAIAPRKIFELVMKMAPQYQVQPQLALAIIAAESNFDSQALSPMNAQGLMQLIPETS 1355 + Y P + L K A ++ V L + ES+F+ +A SP +GLMQ T+ Sbjct: 1 MSYDKNKPSEFDGLFQKAADKHGVSYDLLRKLAFNESSFNPKAKSPTGPKGLMQFTKGTA 60 Query: 1354 QRFQVR-------NPFDAAQNIRGGLAYLRWLLAYFEGDIVLVAAAYNAGEGKVERYRGV 1196 ++ + ++ + +L L+ ++GD + A AYN GEG+ G Sbjct: 61 TALGLKVTDADDDDRYNPELAVDAAARHLSDLIRKYDGDELKAALAYNQGEGR----NGA 116 Query: 1195 PPYQ 1184 P Q Sbjct: 117 PQMQ 120 >ref|YP_164061.1|endolysin Length = 264 Score = 41.2 bits (95), Expect = 5e-04 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 13/94 (13%) Frame = -1 Query: 1444 AIIAAESNFDSQALSPMNAQGLMQLIPETSQ--------RFQVRNPFDAAQNIRGGLAYL 1289 A + ES + + A SP+ AQGL Q +P T++ PF+ +R + Y Sbjct: 110 AQVHQESRWRADARSPVGAQGLAQFMPGTAEWIAGLYPAALGTNQPFNPGWALRALVTYD 169 Query: 1288 RWLL----AYFEGD-IVLVAAAYNAGEGKVERYR 1202 RWL A E D V +AYN G+G V R R Sbjct: 170 RWLYDRNQASSECDRWAFVLSAYNGGQGWVNRDR 203 >ref|NP_958680.1|Bbp11 Length = 720 Score = 39.7 bits (91), Expect = 0.001 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 9/73 (12%) Frame = -1 Query: 1402 SPMNAQGLMQLIPETSQRF---------QVRNPFDAAQNIRGGLAYLRWLLAYFEGDIVL 1250 SP A G+ Q++P+T+ + R DAA N G+AY + L F GD+ Sbjct: 326 SPKGAVGIAQVMPDTAPEAAKLAGLPWDENRYRNDAAYNRALGMAYFQKQLRDFGGDLPK 385 Query: 1249 VAAAYNAGEGKVE 1211 AAYNAG G ++ Sbjct: 386 AYAAYNAGPGALQ 398 >ref|NP_996573.1|hypothetical protein predicted by GeneMark Length = 720 Score = 39.7 bits (91), Expect = 0.001 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 9/73 (12%) Frame = -1 Query: 1402 SPMNAQGLMQLIPETSQRF---------QVRNPFDAAQNIRGGLAYLRWLLAYFEGDIVL 1250 SP A G+ Q++P+T+ + R DAA N G+AY + L F GD+ Sbjct: 326 SPKGAVGIAQVMPDTAPEAAKLAGLPWDENRYRNDAAYNRALGMAYFQKQLRDFGGDLPK 385 Query: 1249 VAAAYNAGEGKVE 1211 AAYNAG G ++ Sbjct: 386 AYAAYNAGPGALQ 398 >ref|NP_996621.1|hypothetical protein predicted by GeneMark Length = 720 Score = 39.7 bits (91), Expect = 0.001 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 9/73 (12%) Frame = -1 Query: 1402 SPMNAQGLMQLIPETSQRF---------QVRNPFDAAQNIRGGLAYLRWLLAYFEGDIVL 1250 SP A G+ Q++P+T+ + R DAA N G+AY + L F GD+ Sbjct: 326 SPKGAVGIAQVMPDTAPEAAKLAGLPWDENRYRNDAAYNRALGMAYFQKQLRDFGGDLPK 385 Query: 1249 VAAAYNAGEGKVE 1211 AAYNAG G ++ Sbjct: 386 AYAAYNAGPGALQ 398 >ref|NP_848303.1|internal virion protein Length = 1318 Score = 38.1 bits (87), Expect = 0.004 Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 7/112 (6%) Frame = -1 Query: 1528 YQAIAPRKIFELVMKMAPQYQVQPQLALAIIAAESNFDSQALSPMNAQGLMQLIPETSQR 1349 Y P L K A V L + ES F A S G+MQ T+ Sbjct: 4 YDKNVPSDYDGLFQKAADANGVSYDLLRKVAWTESRFVPTAKSKTGPLGIMQFTKATANA 63 Query: 1348 FQVR---NPFDAAQN----IRGGLAYLRWLLAYFEGDIVLVAAAYNAGEGKV 1214 +R P D N I +L L+ F+GD + A AYN GEG++ Sbjct: 64 LGLRVTDGPDDDRLNPELAINAAAKHLAGLVGKFDGDELKAALAYNQGEGRL 115 >ref|NP_523341.1|internal virion protein D Length = 1318 Score = 37.7 bits (86), Expect = 0.005 Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 7/112 (6%) Frame = -1 Query: 1528 YQAIAPRKIFELVMKMAPQYQVQPQLALAIIAAESNFDSQALSPMNAQGLMQLIPETSQR 1349 Y P L K A V L + ES F A S G+MQ T+ Sbjct: 4 YDKNVPSDYDGLFQKEADANGVSYDLLRKVAWTESRFVPTAKSKTGPLGIMQFTKATANA 63 Query: 1348 FQVR---NPFDAAQN----IRGGLAYLRWLLAYFEGDIVLVAAAYNAGEGKV 1214 +R P D N I +L L+ F+GD + A AYN GEG++ Sbjct: 64 LGLRVTDGPDDDRLNPELAINAAAKHLAGLVGKFDGDELKAALAYNQGEGRL 115 >ref|NP_042004.1|internal virion protein D Length = 1318 Score = 37.4 bits (85), Expect = 0.007 Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 7/112 (6%) Frame = -1 Query: 1528 YQAIAPRKIFELVMKMAPQYQVQPQLALAIIAAESNFDSQALSPMNAQGLMQLIPETSQR 1349 Y P L K A V L + ES F A S G+MQ T++ Sbjct: 4 YDKNVPSDYDGLFQKAADANGVSYDLLRKVAWTESRFVPTAKSKTGPLGMMQFTKATAKA 63 Query: 1348 FQVR---NPFDAAQN----IRGGLAYLRWLLAYFEGDIVLVAAAYNAGEGKV 1214 +R P D N I L L+ F+GD + A AYN GEG++ Sbjct: 64 LGLRVTDGPDDDRLNPELAINAAAKQLAGLVGKFDGDELKAALAYNQGEGRL 115 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 37.0 bits (84), Expect = 0.009 Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 5/88 (5%) Frame = -3 Query: 2000 RSTRSADTAPYARLGPMPPSAVDRPFGSRPC-----LAGAGPKQHPGCPRYRLAPAGHRL 1836 R+ R T P+ LGP + D P PC AGP++HP R R R Sbjct: 28 RAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRAPSRPAAGPRRHPPVARTR-----PRT 82 Query: 1835 RER*RCAAQPSAGDFPVLPGRCSGRRPS 1752 R CA P P PG C+ P+ Sbjct: 83 RAP-ECAPDPGPAVHPAAPG-CAPAAPA 108 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,362,863 Number of Sequences: 14420 Number of extensions: 245391 Number of successful extensions: 770 Number of sequences better than 0.5: 14 Number of HSP's better than 0.5 without gapping: 679 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 764 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 1036660163 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig204 (2856 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,169,892 Number of Sequences: 14420 Number of extensions: 328606 Number of successful extensions: 1297 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1293 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1384095734 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig205 (3428 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,233,547 Number of Sequences: 14420 Number of extensions: 427806 Number of successful extensions: 1270 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1267 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1676978244 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig206 (2265 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 52 3e-07 >ref|NP_046572.1|ABC transporter Length = 705 Score = 52.0 bits (123), Expect = 3e-07 Identities = 50/218 (22%), Positives = 101/218 (46%), Gaps = 6/218 (2%) Frame = +2 Query: 98 AKPVR-AVDDVSFSIQPGETLGLVGESGSGKSTIGRTLLRLIESTSGQVLYRGEDLGXXX 274 A P+R V+D++ + + + ++GESG+GKST ++L +L + + G D+ Sbjct: 492 ADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYD 551 Query: 275 XXXXXXXXXKLQMIFQDPYASLNPKMRVKDILGEALQVHGLAKGRKVRDARIAELLE--L 448 L + + Y NP + K + E L + + ++ +A I + Sbjct: 552 H---------LSIRKRIVYIDENPFL-FKGTIKENLCMGEIFDQNEIENACIMSQCHEFI 601 Query: 449 VGLRAEHA---SRYPHEFSGGQRQRIGVARALAVEPEFIVADEPLSALDVSIQAQVVNLL 619 L +++ S S GQ+QR+ +ARA+ +P+ ++ DE LS +D L+ Sbjct: 602 CNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNID----PDNTKLI 657 Query: 620 CDLRDRLSLTMLFISHDLDVVEYLCDRVVVLYLGRVME 733 + R+ ++ I+H+ D + ++ +V R++E Sbjct: 658 YETLHRMDCLIILITHN-DPSNFKYNKKLVFRNNRIIE 694 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,221,197 Number of Sequences: 14420 Number of extensions: 232366 Number of successful extensions: 814 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 730 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 810 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1087060699 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig207 (2017 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,818,176 Number of Sequences: 14420 Number of extensions: 198183 Number of successful extensions: 751 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 706 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 751 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 960117037 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig208 (2770 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 37 0.015 ref|NP_040602.1|Tail fiber protein 33 0.12 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 36.6 bits (83), Expect = 0.015 Identities = 48/166 (28%), Positives = 60/166 (36%), Gaps = 18/166 (10%) Frame = -3 Query: 854 HPRRAR-RPGTQPVG*RLPRC---------PGALG*CAGGRPQPLWHLPKARHSVPDPAK 705 HP AR RP T R P C P A G CA P + P R P+ + Sbjct: 72 HPPVARTRPRT-----RAPECAPDPGPAVHPAAPG-CAPAAPAAPEYAPALRPRAPECDR 125 Query: 704 HAVHEHGRRPPVDDRPAP---GAAQCV*LSARRAGAAQARNPERQTPQGSAPGGAWQHGT 534 A H R P R P GA + RR + R R+ Q G + Sbjct: 126 GAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRG 185 Query: 533 RFRDHRRVNTRRPCHDRAAEKPRR-----HRQGRTPEQQPGRADRK 411 R RRV R AA +PRR H + P ++ GR R+ Sbjct: 186 ARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRRHRR 231 Score = 35.8 bits (81), Expect = 0.025 Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 2/131 (1%) Frame = -2 Query: 1524 GQVQHPA-DGCADLFLSSHQHERAGPGQVLDRSPAVAPRGPHGGPVCLPVRQPHRQSQRR 1348 G HPA GCA ++ ++ +PA+ PR P +R +++ R Sbjct: 92 GPAVHPAAPGCAPAAPAAPEY-----------APALRPRAPECDRGAHHLRTRAPRTRTR 140 Query: 1347 ARPDPPGAGHCHGHEHPAQGRQRRHLHAESELQQRRPAG-HFLPLHRRHGNLHRTLRRPV 1171 A P PGA E + R+RR +Q R G H RR G R RP Sbjct: 141 AVPLGPGARVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPG 200 Query: 1170 HGQGRKDRRQP 1138 G R+ RR+P Sbjct: 201 PGAARRPRRRP 211 >ref|NP_040602.1|Tail fiber protein Length = 401 Score = 33.5 bits (75), Expect = 0.12 Identities = 32/114 (28%), Positives = 49/114 (42%) Frame = -1 Query: 466 EDIAKAARLSSSQVVLIEKIQKQAAPEVVAAVKSGAISLNAAAAVATLPEQEQVAAAQGG 287 E+ A+AA+ S + E +++A A + A S + A+ AT V+A+Q Sbjct: 268 ENSARAAKTSETNARSSETAAERSASAAADAKTAAAGSASTASTKATEAAGSAVSASQS- 326 Query: 286 KELLRQAAKRVRESKKRAPVDEAQDSAEDSVAALKARVTELEAENAKLRAQLAT 125 K AA R + S KRA + + ED+ K V A N+ AT Sbjct: 327 KSAAEAAAIRAKNSAKRAEDIASAVALEDADTTRKGIVQLSSATNSTSETLAAT 380 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,457,105 Number of Sequences: 14420 Number of extensions: 318724 Number of successful extensions: 1134 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1004 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1129 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1350626466 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig209 (2911 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 35 0.044 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 35.0 bits (79), Expect = 0.044 Identities = 40/127 (31%), Positives = 49/127 (38%), Gaps = 13/127 (10%) Frame = +2 Query: 1391 RNGSARCRPARAGRMRFRPGPKTTSHPSPVRNTPTR-----NPSQCRSSGKSRPQWP-RA 1552 R + R R AR R P P+T +HP R TR P++ RS P P R Sbjct: 2 RFDARRLRRARPPHTR-TPAPRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRR 60 Query: 1553 ATSAPKRRQAGR*AVRRWQKQT-VPTYRRNPCTAWAGETPGPGLAA------ADSNRAHR 1711 A S P V R + +T P +P A PG AA A + R Sbjct: 61 APSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRPRA 120 Query: 1712 PECRSGA 1732 PEC GA Sbjct: 121 PECDRGA 127 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,014,419 Number of Sequences: 14420 Number of extensions: 351882 Number of successful extensions: 1115 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 988 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1112 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1413268712 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig210 (2844 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,515,141 Number of Sequences: 14420 Number of extensions: 299179 Number of successful extensions: 951 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 868 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 950 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1377612850 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig211 (2976 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,428,818 Number of Sequences: 14420 Number of extensions: 289923 Number of successful extensions: 971 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 879 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 969 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1448924574 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig212 (3106 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164268.1|hypothetical protein 35 0.037 >ref|YP_164268.1|hypothetical protein Length = 68 Score = 35.4 bits (80), Expect = 0.037 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Frame = +2 Query: 2771 SRSMPNRRANTPVAVRVKKAC----WWVFPVAPRWPPSPKNCLDCPPEPRCWASTT 2926 +RS+P R N P ++ C W +P + WPPS C PRCWA T Sbjct: 8 TRSVPLTRTNWPAPFFCRRTCAARCWRKWPPSATWPPS-STC-----SPRCWAWPT 57 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,930,896 Number of Sequences: 14420 Number of extensions: 372636 Number of successful extensions: 1185 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1054 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1185 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1518615577 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig213 (2243 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,367,160 Number of Sequences: 14420 Number of extensions: 242103 Number of successful extensions: 819 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 734 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 819 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1075513772 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig214 (3047 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_944303.1|conserved phage mega protein 32 0.30 ref|NP_046572.1|ABC transporter 32 0.40 >ref|NP_944303.1|conserved phage mega protein Length = 4602 Score = 32.3 bits (72), Expect = 0.30 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 20/98 (20%) Frame = -3 Query: 2259 QRGAAEKAHIDGGRPAQGELAELPGGRVAGFCQARHADRQTQRR---------ALHDADQ 2107 ++GA + +GGR A G + E P GR AG + A R Q R A +AD Sbjct: 1478 EQGAGRVSPDEGGRDA-GRVPEQPSGRDAGGDRGGAAKRNRQSRDAGEPAVRGAAAEADA 1536 Query: 2106 RHQHGHLQAAPEQHGV-----------LGNDVSAKPAE 2026 QHG ++ G +G+D KP E Sbjct: 1537 GDQHGREVGRGDRAGAGDGNDRGPVSRVGDDYRVKPGE 1574 >ref|NP_046572.1|ABC transporter Length = 705 Score = 32.0 bits (71), Expect = 0.40 Identities = 14/51 (27%), Positives = 29/51 (56%) Frame = +2 Query: 2807 VLRGIDCSIQASEVVCVIGPSGSGKSTFLRCLNGLEDASGXAVLVGGVFVH 2959 ++ I+ + + V +IG SG+GKSTF + L+ L ++ + G+ ++ Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDIN 548 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,587,443 Number of Sequences: 14420 Number of extensions: 290766 Number of successful extensions: 1082 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 966 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1079 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1487821878 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig216 (2288 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,706,550 Number of Sequences: 14420 Number of extensions: 323995 Number of successful extensions: 1163 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 996 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1158 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1100257187 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig217 (2681 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family 74 1e-13 ref|YP_024677.1|gp04 62 2e-10 ref|NP_818162.1|gp89 33 0.20 >ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family Length = 92 Score = 73.6 bits (179), Expect = 1e-13 Identities = 35/90 (38%), Positives = 54/90 (60%) Frame = +1 Query: 1855 LTKAQLAELLFEKIGLNKRESKDMVDAFFDLVADSLLKGEDVKISGFGNFQIRTKAPRPG 2034 + K +L + EK G++K+E V+ FD ++++L GE V I GFG F++R +A R G Sbjct: 1 MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60 Query: 2035 RNPRTGETIPIQARRVVTFHAGYKLKEQIQ 2124 RNP+TGE I I A + F LK+ ++ Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALKDAVK 90 >ref|YP_024677.1|gp04 Length = 90 Score = 62.4 bits (150), Expect = 2e-10 Identities = 32/90 (35%), Positives = 51/90 (56%) Frame = +1 Query: 1855 LTKAQLAELLFEKIGLNKRESKDMVDAFFDLVADSLLKGEDVKISGFGNFQIRTKAPRPG 2034 + K+ L + + G+ K +S ++A + + SL KG+ V ++GFG F + +A R G Sbjct: 1 MNKSDLINHVAAETGMTKTDSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTG 60 Query: 2035 RNPRTGETIPIQARRVVTFHAGYKLKEQIQ 2124 RNP TGE I I A + F AG LK+ ++ Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKDAVK 90 >ref|NP_818162.1|gp89 Length = 874 Score = 32.7 bits (73), Expect = 0.20 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Frame = +2 Query: 2270 LPSIPAKRYFTIGEVGDLCGVKPHVLRYWEQEFTQLRPMKRRGNRRYYQHHEV-LMIRRI 2446 LP A+ YFT+GEV L L W E M R + Q V LM++ + Sbjct: 169 LPDQFAREYFTVGEVTSLAHFN-ESLGVWSSEEILNPDMLRVSRSMFVQRERVQLMVKDL 227 Query: 2447 RDLLYDQGFTISGARQKMQEILQTERDKK 2533 D L QG T +G E +ER+++ Sbjct: 228 VDHL-RQGPTTAGGNMSTVEETPSEREQR 255 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,280,836 Number of Sequences: 14420 Number of extensions: 304193 Number of successful extensions: 938 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 853 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 938 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1303207377 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig218 (2003 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,222,506 Number of Sequences: 14420 Number of extensions: 212430 Number of successful extensions: 726 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 676 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 726 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 953461113 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig219 (3002 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_024959.1|gp39 33 0.13 >ref|YP_024959.1|gp39 Length = 455 Score = 33.5 bits (75), Expect = 0.13 Identities = 23/74 (31%), Positives = 35/74 (47%) Frame = -3 Query: 516 SELFKGLALTGKYAFRSKITLEYPEEKTPLSPRFRGLHALRRYENGEERCIACKLCEAIC 337 +EL ++ T K A + E PLSP + GE++C CK +A+C Sbjct: 229 TELHAWISETAKPAADRALLYVDSVELAPLSPS--------DFNPGEKQCKFCK-AKAVC 279 Query: 336 PAMAITIESEVRAD 295 PA+A +E + AD Sbjct: 280 PALAAHVEQTIGAD 293 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,719,681 Number of Sequences: 14420 Number of extensions: 362635 Number of successful extensions: 1131 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1011 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1121 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1463511063 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig220 (2655 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,576,412 Number of Sequences: 14420 Number of extensions: 321178 Number of successful extensions: 1041 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 903 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1041 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1288491108 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig221 (2423 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_037717.1|tail fiber 38 0.004 ref|YP_164705.1|orf70 36 0.022 ref|NP_049805.1|gp29 baseplate hub subunit, tail length determin... 36 0.022 ref|NP_680494.1|tape measure protein 35 0.028 ref|NP_037684.1|gp24 35 0.037 ref|YP_164321.1|hypothetical protein 35 0.048 ref|NP_859265.1|hypothetical protein 34 0.063 ref|NP_612899.1|hypothetical protein 34 0.063 ref|NP_859099.1|hypothetical protein 34 0.063 ref|NP_050557.1|hypothetical protein 34 0.063 ref|NP_049519.1|putative tail fiber protein 34 0.063 ref|NP_817908.1|gp57 32 0.24 ref|NP_064745.1|gp7 32 0.31 ref|NP_839934.1|putative tail lysin 32 0.41 >ref|NP_037717.1|tail fiber Length = 1296 Score = 38.1 bits (87), Expect = 0.004 Identities = 46/242 (19%), Positives = 96/242 (39%), Gaps = 11/242 (4%) Frame = -1 Query: 2168 GKDEIGQLLQALSTMQDNLSRVVSNVRQGSESVATASAEIAQGNQDLSARTESQASALEE 1989 G + L++ + ++ + +++Q ++ + + EIA+ QD+ + Sbjct: 830 GSETFKDLIENAVDSNEKIAGMADDIKQANDELELQAQEIAKNAQDIG-----------Q 878 Query: 1988 TAASMEELSSTVKQNADNAKQANQLAQSASSVAIQGGEVVAQVVDTMKGINTSSQRISDI 1809 S+ ELSSTV D + + L Q+ ++ G+ + + +M G+ + + Sbjct: 879 VQTSVNELSSTV---GDVSSSLSDLEQTVATADTALGQRIDSISVSMDGMTGGVK--NSA 933 Query: 1808 ISVIDGIAFQTNIXXXXXXXXXXXXXXXXXXXAVVASE----VRSLAGRSAD--AAKEIK 1647 I++I G Q V+ SE RSL D K Sbjct: 934 IAIIQGNLAQVAARKTLSASVAGNSAQLDRLDEVIVSEKEATARSLLSLQTDVNGNKASI 993 Query: 1646 NLINDSVERVEQGTA-----LVGQAGATMTEVVSSIRRVTDIMGEISAASSEQSAGVSQV 1482 N +N ++ +Q TA + + + ++ + + ++ GE+SA + + GVS Sbjct: 994 NSLNQTLSDYQQATATQINGITATVNGHTSAITTNAQAIANVNGELSAMYNIK-VGVSSN 1052 Query: 1481 GE 1476 G+ Sbjct: 1053 GQ 1054 >ref|YP_164705.1|orf70 Length = 638 Score = 35.8 bits (81), Expect = 0.022 Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 3/131 (2%) Frame = -1 Query: 2186 QPLSAAGKDEIGQLLQALSTMQ---DNLSRVVSNVRQGSESVATASAEIAQGNQDLSART 2016 QP + ++I Q + +++++ D + V SNV + +V T A + + + S T Sbjct: 384 QPKTIELNNKINQTMSEINSLEKSIDATNMVKSNVESSARTVNTYKANLERLESEPSIDT 443 Query: 2015 ESQASALEETAASMEELSSTVKQNADNAKQANQLAQSASSVAIQGGEVVAQVVDTMKGIN 1836 E +LEE +S++E S ++ K + + S+ I+ V+ QV IN Sbjct: 444 EGTLKSLEEATSSLKEYQSKFDEDTRKVKVLDGVKGVFSNTGIK-SFVLEQV---YPAIN 499 Query: 1835 TSSQRISDIIS 1803 S ++ +++ Sbjct: 500 ESLEKYMSVLT 510 >ref|NP_049805.1|gp29 baseplate hub subunit, tail length determinator Length = 590 Score = 35.8 bits (81), Expect = 0.022 Identities = 27/97 (27%), Positives = 48/97 (49%) Frame = -1 Query: 2126 MQDNLSRVVSNVRQGSESVATASAEIAQGNQDLSARTESQASALEETAASMEELSSTVKQ 1947 MQ +V+S+ + E+ +AS ++ G D+S + + +A E A ++EE S+ + Sbjct: 7 MQTMRRKVISDNKPTQEAAKSASNTLS-GLNDISTKLDDAQAASELIAQTVEEKSNEIIG 65 Query: 1946 NADNAKQANQLAQSASSVAIQGGEVVAQVVDTMKGIN 1836 DN +SA S G E++A+ V+ IN Sbjct: 66 AIDN-------VESAVSDTSAGSELIAETVEIGNNIN 95 >ref|NP_680494.1|tape measure protein Length = 1621 Score = 35.4 bits (80), Expect = 0.028 Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 15/140 (10%) Frame = -1 Query: 2165 KDEIGQLLQALSTMQDNLSRVVSNVRQGSESVATASAEIAQGNQDLSARTESQ-----AS 2001 KD G + A + + +++G + + A+ E ++ Q + Q A Sbjct: 676 KDASGAISGAFDDTNHTVEQNSKTIKKGFDDITKAAKESSKNTQTALDKLAKQVGGSTAD 735 Query: 2000 ALEETAASMEELSST-VKQNADNAKQANQLAQSASSVAIQGGEVVAQVVDTM-------- 1848 + + AA M++ +KQ NAKQA + +SAS + Q++D + Sbjct: 736 QIHKDAAEMKKADDARIKQIEANAKQAKSITESASKEHAEFTRDQIQILDNLRKSSAAEA 795 Query: 1847 -KGINTSSQRISDIISVIDG 1791 K + S + ++++ I+G Sbjct: 796 VKTLRISGTQQANVLKAING 815 >ref|NP_037684.1|gp24 Length = 1183 Score = 35.0 bits (79), Expect = 0.037 Identities = 41/238 (17%), Positives = 93/238 (39%), Gaps = 7/238 (2%) Frame = -1 Query: 2168 GKDEIGQLLQALSTMQDNLSRVVSNVRQGSESVATASAEIAQGNQDLSARTESQASALEE 1989 G + L++ + ++ + +++Q ++ + + EIA+ QD+ + Sbjct: 830 GSETFKDLIENAVDSNEKIAGMADDIKQANDELELQAQEIAKNAQDIG-----------Q 878 Query: 1988 TAASMEELSSTVKQNADNAKQANQLAQSASSVAIQGGEVVAQVVDTMKGINTSSQRISDI 1809 S+ ELSSTV + + Q +A + Q + ++ +D M G + I+ I Sbjct: 879 VQTSVNELSSTVGDVSSSLSDLEQTVATADTALGQRIDSISVSMDGMTG-GVKNSAIAII 937 Query: 1808 ISVIDGIAFQTNIXXXXXXXXXXXXXXXXXXXAVVASEVRSLAGRSAD--AAKEIKNLIN 1635 + + +A + ++ + RSL D K N +N Sbjct: 938 QNGLAQVATRKSLSASVAGNSAQLDRIDEVIVNEKEATARSLLSLQTDVNGNKASINSLN 997 Query: 1634 DSVERVEQGTA-----LVGQAGATMTEVVSSIRRVTDIMGEISAASSEQSAGVSQVGE 1476 + +Q TA + + + ++ + + ++ G++SA + + GVS G+ Sbjct: 998 QTFSDYQQATATQINGITATVNGNTSAITTNAQAIANVNGDLSAMYNIK-VGVSSNGQ 1054 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 34.7 bits (78), Expect = 0.048 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 15/91 (16%) Frame = -3 Query: 2139 GPVHHAGQPEPGRL*RPSGLRERGNCQ-----CR-DCPGQPR-----SLGPHRKPGQR-- 1999 G V H G P PGR SG R+RG + CR + P Q R HR+ +R Sbjct: 514 GAVQHVGVPGPGRSLARSGQRQRGRRRNAISLCRHEQPDQHRLRRNADQRVHREDAERRT 573 Query: 1998 --AGRNRRLDGRTQLHRQAKRRQRQTGQPVG 1912 A R+ +G +HR A R+ +G VG Sbjct: 574 AGADRSGGGEGPGAVHRSASGRRSVSGARVG 604 >ref|NP_859265.1|hypothetical protein Length = 645 Score = 34.3 bits (77), Expect = 0.063 Identities = 19/93 (20%), Positives = 43/93 (46%) Frame = -1 Query: 2153 GQLLQALSTMQDNLSRVVSNVRQGSESVATASAEIAQGNQDLSARTESQASALEETAASM 1974 G+LL +Q+N++ ++ +R+ +E AT + + Q + +A +S + + + + Sbjct: 100 GELLTDFRQIQNNVADDLATIRRLNEDTATKNTQATQSKESAAASAKSASDSAKTATSRA 159 Query: 1973 EELSSTVKQNADNAKQANQLAQSASSVAIQGGE 1875 E + A +A A +A + + GE Sbjct: 160 AEAGQKATDATEAATRAVTAAGNAEESSTRAGE 192 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 34.3 bits (77), Expect = 0.063 Identities = 19/93 (20%), Positives = 43/93 (46%) Frame = -1 Query: 2153 GQLLQALSTMQDNLSRVVSNVRQGSESVATASAEIAQGNQDLSARTESQASALEETAASM 1974 G+LL +Q+N++ ++ +R+ +E AT + + Q + +A +S + + + + Sbjct: 100 GELLTDFRQIQNNVADDLATIRRLNEDTATKNTQATQSKESAAASAKSASDSAKTATSRA 159 Query: 1973 EELSSTVKQNADNAKQANQLAQSASSVAIQGGE 1875 E + A +A A +A + + GE Sbjct: 160 AEAGQKATDATEAATRAVTAAGNAEESSTRAGE 192 >ref|NP_859099.1|hypothetical protein Length = 645 Score = 34.3 bits (77), Expect = 0.063 Identities = 19/93 (20%), Positives = 43/93 (46%) Frame = -1 Query: 2153 GQLLQALSTMQDNLSRVVSNVRQGSESVATASAEIAQGNQDLSARTESQASALEETAASM 1974 G+LL +Q+N++ ++ +R+ +E AT + + Q + +A +S + + + + Sbjct: 100 GELLTDFRQIQNNVADDLATIRRLNEDTATKNTQATQSKESAAASAKSASDSAKTATSRA 159 Query: 1973 EELSSTVKQNADNAKQANQLAQSASSVAIQGGE 1875 E + A +A A +A + + GE Sbjct: 160 AEAGQKATDATEAATRAVTAAGNAEESSTRAGE 192 >ref|NP_050557.1|hypothetical protein Length = 645 Score = 34.3 bits (77), Expect = 0.063 Identities = 19/93 (20%), Positives = 43/93 (46%) Frame = -1 Query: 2153 GQLLQALSTMQDNLSRVVSNVRQGSESVATASAEIAQGNQDLSARTESQASALEETAASM 1974 G+LL +Q+N++ ++ +R+ +E AT + + Q + +A +S + + + + Sbjct: 100 GELLTDFRQIQNNVADDLATIRRLNEDTATKNTQATQSKESAAASAKSASDSAKTATSRA 159 Query: 1973 EELSSTVKQNADNAKQANQLAQSASSVAIQGGE 1875 E + A +A A +A + + GE Sbjct: 160 AEAGQKATDATEAATRAVTAAGNAEESSTRAGE 192 >ref|NP_049519.1|putative tail fiber protein Length = 645 Score = 34.3 bits (77), Expect = 0.063 Identities = 19/93 (20%), Positives = 43/93 (46%) Frame = -1 Query: 2153 GQLLQALSTMQDNLSRVVSNVRQGSESVATASAEIAQGNQDLSARTESQASALEETAASM 1974 G+LL +Q+N++ ++ +R+ +E AT + + Q + +A +S + + + + Sbjct: 100 GELLTDFRQIQNNVADDLATIRRLNEDTATKNTQATQSKESAAASAKSASDSAKTATSRA 159 Query: 1973 EELSSTVKQNADNAKQANQLAQSASSVAIQGGE 1875 E + A +A A +A + + GE Sbjct: 160 AEAGQKATDATEAATRAVTAAGNAEESSTRAGE 192 >ref|NP_817908.1|gp57 Length = 1461 Score = 32.3 bits (72), Expect = 0.24 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Frame = -1 Query: 2255 RSISSRVDAARLAAQRIGEGDLSQPLS--AAGKDEIGQLLQALSTMQDNLSRVVSNVRQG 2082 R + R A + QR+ D Q +S AG+++ ++ + +T LSR R+ Sbjct: 30 RDQAERARQAYITEQRVLR-DTRQSISDVVAGREKHDVVVNSNATSLARLSRAAMKYRKD 88 Query: 2081 SESVATASAEIAQGNQDLSARTESQASALEETAASMEELSSTVKQNADNAKQANQLAQSA 1902 SE + + E+ + N L+ + A A ++ + + + + Q Q A+ Sbjct: 89 SEGLRAVNDEVIRSNTSLTRAFDRVGDATRSAHAEHQKYNRMARDTSVSQDQLRQQAERV 148 Query: 1901 S 1899 S Sbjct: 149 S 149 >ref|NP_064745.1|gp7 Length = 540 Score = 32.0 bits (71), Expect = 0.31 Identities = 55/248 (22%), Positives = 84/248 (33%) Frame = -1 Query: 2231 AARLAAQRIGEGDLSQPLSAAGKDEIGQLLQALSTMQDNLSRVVSNVRQGSESVATASAE 2052 AA L AQ E + +A E + LS S + SE+ A+ASA Sbjct: 78 AAALVAQAAAELAENNAETAEVNAEASETAAGLSATAAATSATNAGA---SETAASASAT 134 Query: 2051 IAQGNQDLSARTESQASALEETAASMEELSSTVKQNADNAKQANQLAQSASSVAIQGGEV 1872 + + SA + SQA+ AA E ++T + NA N+ A + SAS+ Q Sbjct: 135 ASATSATNSATSASQAATSASAAAVSEGNAATSETNAANS--ATSASGSASTATTQASAA 192 Query: 1871 VAQVVDTMKGINTSSQRISDIISVIDGIAFQTNIXXXXXXXXXXXXXXXXXXXAVVASEV 1692 ++ N ++ + S + A Q A SE Sbjct: 193 ------SVSATNAATSASNAATSATNAAASQA---------------------AAATSET 225 Query: 1691 RSLAGRSADAAKEIKNLINDSVERVEQGTALVGQAGATMTEVVSSIRRVTDIMGEISAAS 1512 + A S +++ TA A + +S E +AAS Sbjct: 226 NAAASESTVTTSATNAATSEANAATSASTATTQATNAATSASTASTSATNAATSETNAAS 285 Query: 1511 SEQSAGVS 1488 S SA S Sbjct: 286 SASSAASS 293 >ref|NP_839934.1|putative tail lysin Length = 1711 Score = 31.6 bits (70), Expect = 0.41 Identities = 45/234 (19%), Positives = 92/234 (39%), Gaps = 8/234 (3%) Frame = -1 Query: 2141 QALSTMQDNLSRVVSNVRQGSESVATASAEIAQGNQDLSARTESQASALEETAASMEELS 1962 Q + +QD+ R + G E VA + +AQ +D + + + +E A +EL Sbjct: 287 QMAADLQDSYIRTTNLAVTGGEKVAEVTKNVAQMQKDGAQYSVEYGKSQKEIAEGYQEL- 345 Query: 1961 STVKQNADNAKQANQLAQSASSVAIQGGE------VVAQVVDTMKGINT--SSQRISDII 1806 +K+ + + + + G + V +QVVD G+ T ++Q + Sbjct: 346 --IKRGYTSTEALGAMRSELQASVASGDDFNNVLSVTSQVVDAY-GMRTDNAAQMTKNTK 402 Query: 1805 SVIDGIAFQTNIXXXXXXXXXXXXXXXXXXXAVVASEVRSLAGRSADAAKEIKNLINDSV 1626 V++ +A+ ++ V S + ++A+ I L N + Sbjct: 403 DVVNQLAYAADM-------TATDFASMGKAMEYVGDSSHSAGFQLSEASSAIGILSNHGL 455 Query: 1625 ERVEQGTALVGQAGATMTEVVSSIRRVTDIMGEISAASSEQSAGVSQVGEAVTQ 1464 E + GT L +V++SI T + + SA+ + + S + E + + Sbjct: 456 EADKAGTGL--------RKVINSI---TGALSDQSASQEDAAKSESALNEKIAE 498 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,150,168 Number of Sequences: 14420 Number of extensions: 243686 Number of successful extensions: 840 Number of sequences better than 0.5: 14 Number of HSP's better than 0.5 without gapping: 750 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 830 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1174487432 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig223 (2171 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817791.1|gp30 31 0.48 >ref|NP_817791.1|gp30 Length = 478 Score = 31.2 bits (69), Expect = 0.48 Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 5/115 (4%) Frame = +3 Query: 1644 CWRPPALARRSWQCSRPNRVPTGHRSGSKKSVWRSCWLSRLGFAEGVDYRSVMIR--LAK 1817 CW P AL C++ R G+ W F YR + +A+ Sbjct: 89 CWAPSAL------CTQECRSLLGYDDS---------WPGLREFLGDTIYRPELAPWYVAE 133 Query: 1818 HPSLAGLFSSHWCAVWLL---GLRKNKASGGILPRLGSRGVAGPPACPDPVGRQE 1973 P S+ + VW++ GL A I+P +G GVAGPP P V R E Sbjct: 134 QPE-----SAEFGGVWVMQVDGLDVTPAEREIMPVVGPGGVAGPPRDPHRVVRFE 183 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,279,447 Number of Sequences: 14420 Number of extensions: 238024 Number of successful extensions: 804 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 691 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 800 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 1046644049 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig224 (3378 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164321.1|hypothetical protein 33 0.26 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 32.7 bits (73), Expect = 0.26 Identities = 42/157 (26%), Positives = 51/157 (32%), Gaps = 11/157 (7%) Frame = +2 Query: 773 AGAR*RNDICQPARVGRCSRQKFVCCGLLFQTASGEQTPGQLFRGQGHHHGRQATACAAN 952 AG R R D GRC Q G Q G ++ G+G G Sbjct: 460 AGPRLRFDHSGVGEQGRCQGQ-----GRADQDGGGAHQGVEVLGGRGRLQG--------- 505 Query: 953 HPAGRPDHG*TAGRVGQPGLGCHVCPLAAR-----------CQEPASGVRTLRVAVHGGP 1099 HPAG+P+ G VG PG G + R C+ LR Sbjct: 506 HPAGQPERG-AVQHVGVPGPGRSLARSGQRQRGRRRNAISLCRHEQPDQHRLRRNADQRV 564 Query: 1100 HHLSAATGTAAHDQSAAQAGNGGHRCRHLGVRSENTA 1210 H A TA D+S G G G RS + A Sbjct: 565 HREDAERRTAGADRSGGGEGPGAVHRSASGRRSVSGA 601 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,451,333 Number of Sequences: 14420 Number of extensions: 368569 Number of successful extensions: 1214 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1085 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1213 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1649671127 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig225 (2228 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,627,703 Number of Sequences: 14420 Number of extensions: 210943 Number of successful extensions: 776 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 689 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 776 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1067265967 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig226 (2805 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase 33 0.21 >ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase Length = 320 Score = 32.7 bits (73), Expect = 0.21 Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 9/161 (5%) Frame = -3 Query: 469 IVVTGAAGFIGSNIIQGLNARGLNDIIAIDDLTQGDKFRNLAHLKISDYVDASVFYDLFA 290 I++TG GFIGS +++ LN ND + + D F N I D VF DL Sbjct: 2 ILITGCTGFIGSQLLKRLN----NDKVVC--VANKDHFSN----NIVDSAAEYVFVDLTD 51 Query: 289 NGAYGQI------EAVFHEGACSDTMESNGKYMMDNNYATSVNLFQACQKRGARLLYASS 128 + + V + + + S NN + N+ A A L++AS+ Sbjct: 52 REKVRDLLRKVKPDLVINLASKTPVRLSYEDTSFMNNAIIAYNIAMA----EAPLIHAST 107 Query: 127 AATYGGS---DTFREDPAFERPLNVYGYSKLLFDQRMRRRR 14 A Y + ++E+ + P + Y SK+ + + R+ Sbjct: 108 AEVYPYTPYPHYYKEEEVYRTPTSPYAVSKIASEMLLAGRK 148 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,475,767 Number of Sequences: 14420 Number of extensions: 298688 Number of successful extensions: 1019 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 930 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1018 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1370248158 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig228 (2641 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061653.1|transposase 86 3e-17 ref|NP_040341.1|putative transposase 55 3e-08 >ref|NP_061653.1|transposase Length = 328 Score = 85.5 bits (210), Expect = 3e-17 Identities = 40/65 (61%), Positives = 48/65 (73%) Frame = -3 Query: 2435 IAVYFCDPHSPWQRGTNENTNG*FRQFLPKGTDLSGYSQEQLDAIADLMNGRPRKTLDWC 2256 I VYF DP+S WQRGTNENTNG R+F PK TDL+ +QEQL+ D +N RPRK L+W Sbjct: 255 INVYFADPYSAWQRGTNENTNGLLREFFPKKTDLAKVNQEQLNYALDSINYRPRKCLNWK 314 Query: 2255 TPHEV 2241 P+EV Sbjct: 315 FPYEV 319 >ref|NP_040341.1|putative transposase Length = 322 Score = 55.5 bits (132), Expect = 3e-08 Identities = 25/64 (39%), Positives = 39/64 (60%) Frame = -3 Query: 2429 VYFCDPHSPWQRGTNENTNG*FRQFLPKGTDLSGYSQEQLDAIADLMNGRPRKTLDWCTP 2250 VYFCD SP Q+ E N R + PKGTD + SQ+Q+D + +++N + R L+W + Sbjct: 255 VYFCDAGSPQQKPLIEYMNSELRHWFPKGTDFNKVSQKQIDWVVNVINDKLRPCLNWISS 314 Query: 2249 HEVY 2238 E++ Sbjct: 315 KEMF 318 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,613,523 Number of Sequences: 14420 Number of extensions: 277333 Number of successful extensions: 758 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 688 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 757 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1280315403 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig229 (2556 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,306,830 Number of Sequences: 14420 Number of extensions: 278576 Number of successful extensions: 1091 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 963 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1090 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1234531455 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig231 (2360 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817395.1|gp57 34 0.061 ref|NP_052123.1|19.2 protein 32 0.23 >ref|NP_817395.1|gp57 Length = 287 Score = 34.3 bits (77), Expect = 0.061 Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 9/96 (9%) Frame = -3 Query: 1071 WCTAWTRTGSRGRSTASMKSMPVCVTSSCSRAWKSTSWKMARSTCLMRFWVALTS----- 907 W AW+ GS RS A + +++ S AW S +W A S W A S Sbjct: 154 WSAAWSAAGSAARSAAGSAAGSAAWSAAGSAAW-SAAWSAAESAAGSAAWSAAWSAAGSA 212 Query: 906 -W---WALCTVASICPATSRLTGCCGPWTTAVSAFW 811 W W+ A+ A S G + A SA W Sbjct: 213 AWSAAWSAAGSAAGSAAESAARSAAG--SAAESAAW 246 >ref|NP_052123.1|19.2 protein Length = 77 Score = 32.3 bits (72), Expect = 0.23 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Frame = -3 Query: 948 RSTCLMRFWVALTSWWALC-----TVASICPATSRLTGCCGPWTTAVSAFWRIPR 799 R TC M + W C T+ S C +RLT C W T VS W R Sbjct: 17 RKTCTM------ATVWPRCSAKSSTMGSRCSKVNRLTPCASIWKTCVSVSWNTVR 65 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,014,032 Number of Sequences: 14420 Number of extensions: 280994 Number of successful extensions: 929 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 845 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 928 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1139846651 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig232 (2305 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,962,840 Number of Sequences: 14420 Number of extensions: 216650 Number of successful extensions: 780 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 701 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 776 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1108504992 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig233 (3116 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164319.1|hypothetical protein 41 9e-04 >ref|YP_164319.1|hypothetical protein Length = 116 Score = 40.8 bits (94), Expect = 9e-04 Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 12/92 (13%) Frame = +3 Query: 2460 TRAPCSVKPRCCAKCWHATRMQPRRWMRWQPLAVSRLRPWWV----LCCRPLPSAA*LWW 2627 + AP + RCC CW T ++ R MR L+ R WW+ R SA WW Sbjct: 26 SEAPRASARRCCTGCWCCTPIRRRCRMR---LSTDRRTCWWIRQPSAMRRATGSAPGCWW 82 Query: 2628 -----MASLPPAP---CWSPTPCSRWCCRLVC 2699 PAP C S TP R C + C Sbjct: 83 SIRPRQRIASPAPFVSCTSMTPWCRMGCWIAC 114 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,680,201 Number of Sequences: 14420 Number of extensions: 321724 Number of successful extensions: 1184 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1027 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1182 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1525098461 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig236 (4473 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,766,336 Number of Sequences: 14420 Number of extensions: 512674 Number of successful extensions: 1790 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1486 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1790 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2192670790 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig237 (3250 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,319,660 Number of Sequences: 14420 Number of extensions: 280657 Number of successful extensions: 986 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 834 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 986 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1596410185 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig239 (2440 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061549.1|Orf53 35 0.037 >ref|NP_061549.1|Orf53 Length = 354 Score = 35.0 bits (79), Expect = 0.037 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Frame = +1 Query: 652 AEADKQPARQTVEHPRDALALQRG-ADARAERRVDEIPAHLDHRERDDENAELRQRRLGR 828 AEA++ A + + RDA A + A A AERR E+ + ER+ A+ R + R Sbjct: 217 AEAERLAAERRAQEERDATARREAEAKAAAERRELELRLAAEKAEREKLEAQQRAEQAER 276 Query: 829 VDELRQQRGREQDRLRVAARDQEAIAEQHRA 921 + R + +R R A D++A E+ A Sbjct: 277 DAQRRAEEATAAERQRQA--DEQARIEREAA 305 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,790,912 Number of Sequences: 14420 Number of extensions: 140458 Number of successful extensions: 543 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 482 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 543 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1182735237 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig242 (3791 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,874,104 Number of Sequences: 14420 Number of extensions: 422188 Number of successful extensions: 1361 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1168 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1361 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1852949484 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig244 (3007 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,568,029 Number of Sequences: 14420 Number of extensions: 215246 Number of successful extensions: 824 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 749 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 822 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1465131784 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig245 (3862 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,551,733 Number of Sequences: 14420 Number of extensions: 325616 Number of successful extensions: 1158 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 980 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1152 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1889562747 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig246 (3320 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,863,953 Number of Sequences: 14420 Number of extensions: 205572 Number of successful extensions: 700 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 664 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 700 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1619151408 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig247 (3612 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003955.1|hypothetical protein 44 1e-04 >ref|YP_003955.1|hypothetical protein Length = 59 Score = 43.9 bits (102), Expect = 1e-04 Identities = 19/24 (79%), Positives = 21/24 (87%) Frame = -2 Query: 650 MAKGKFERTKPHVNVGTIGHVDHG 579 M+K KFERTKP +NVG IGHVDHG Sbjct: 1 MSKEKFERTKPVLNVGIIGHVDHG 24 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,393,836 Number of Sequences: 14420 Number of extensions: 381201 Number of successful extensions: 1085 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 987 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1085 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1774962605 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig248 (2873 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945089.1|gp58 42 4e-04 ref|YP_164321.1|hypothetical protein 33 0.17 ref|NP_040602.1|Tail fiber protein 32 0.49 >ref|NP_945089.1|gp58 Length = 297 Score = 42.0 bits (97), Expect = 4e-04 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 8/140 (5%) Frame = +1 Query: 31 PATRNERLLDAPLTALCTPD-IARRLAQPADLANETLLRSYRTD-EWLGWFDAAQLEPWA 204 P ++ + A C P +A R P DL TLL + +W+GW D +L Sbjct: 155 PGIAGTAIVAEDVHAYCAPTFLAGRRVPPQDLMEATLLVAEEQQRQWMGWRDWFRLTVGE 214 Query: 205 VN-GPV----FDSSRLMVEAAMQGAGIALAPACMFARELQLGLLARPLDIDVRAGG-YWL 366 + P +S ++++ A+ G G L M ++ G L D GG Y + Sbjct: 215 IGFRPARTISANSYPVLLQLALHGHGAILGWKHMITPLVESGKLVLASDAHASFGGAYQV 274 Query: 367 TSLKSKPLTPAMTLFRDWIV 426 + TPA+T+FR+W++ Sbjct: 275 IWPADRRDTPAVTMFREWLL 294 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 33.1 bits (74), Expect = 0.17 Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 7/113 (6%) Frame = -3 Query: 354 AGAHVDVERSCEQAE---LQFAREHAGGGERDARTLHRGLDHQPGRIEHGPVDGPRFELR 184 AGA + + C + LQ R GG D RG+ Q GR E R Sbjct: 348 AGAGLPHQAGCGYLQADCLQDRRGGPGGAGADQPAARRGVQGQAGR--------RTVERR 399 Query: 183 GVEPAEPFVGAIRAQ---QRFVREIGRLREAPCDVRRAQRGE-RRIEQPLVAR 37 G++ A+ G IRA+ Q VR + R R C R + G+ RR+ P R Sbjct: 400 GLQGAD--AGGIRARRDDQEPVRRLPRRRAGVCRADRRREGQVRRLRGPRQGR 450 >ref|NP_040602.1|Tail fiber protein Length = 401 Score = 31.6 bits (70), Expect = 0.49 Identities = 29/128 (22%), Positives = 52/128 (40%) Frame = +1 Query: 1279 AAGRYSTATTFTRPGCSAAATTWPSTRRNVSDTVSSPTRSASIRSQSTPSGNAGRSTRTS 1458 +AG+ +++ G AA+ ++ + SS +A+ S A +++ T+ Sbjct: 158 SAGQAASSAQEASSGAEAASAKATEAEKSAAAAESSKNAAAT-------SAGAAKTSETN 210 Query: 1459 WRDASMLTPRHACSIMNGAPAAHACGRQATGYAVGGSPRRRGNPQNSSGRRISKLTAASN 1638 + A + A A R A + + N +S+GR S TAA N Sbjct: 211 AAASQQSAATSASTAATKASEAATSARDAVA-SKEAAKSSETNASSSAGRAASSATAAEN 269 Query: 1639 SARSRFTA 1662 SAR+ T+ Sbjct: 270 SARAAKTS 277 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,467,161 Number of Sequences: 14420 Number of extensions: 222402 Number of successful extensions: 815 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 688 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 815 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1393820060 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig249 (3154 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817695.1|gp17 33 0.24 >ref|NP_817695.1|gp17 Length = 553 Score = 32.7 bits (73), Expect = 0.24 Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 4/105 (3%) Frame = +1 Query: 811 RSPSRRAGDAACRMPDERPSLHSPRRDPVQAPQRRGNHEKRG--IRRRPETGDLHRRRTP 984 R P RR R+PD +L +P R APQ RG+ G ++RR G LH R P Sbjct: 436 RVPQRRV----FRVPDAA-ALPAPLRHGPDAPQHRGHGADPGAPVQRR---GHLHIPRHP 487 Query: 985 LPQCRHRRTGGENQRAGMRE-CQQARNDP-EPQQRMRAAPRAQHR 1113 + R + G +Q +R C AR+ P P R+ HR Sbjct: 488 VRHPRLHVSAGGSQECPVRPVCVGARHLPRRPHVADLPGARSDHR 532 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,999,383 Number of Sequences: 14420 Number of extensions: 283544 Number of successful extensions: 898 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 812 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 898 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1544547113 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig250 (3202 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,055,621 Number of Sequences: 14420 Number of extensions: 189415 Number of successful extensions: 851 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 761 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 850 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1570478649 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig251 (4160 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,602,056 Number of Sequences: 14420 Number of extensions: 200420 Number of successful extensions: 879 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 736 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 878 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 2048750847 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig252 (3244 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958209.1|gene 33 protein 36 0.029 ref|YP_164321.1|hypothetical protein 33 0.25 >ref|NP_958209.1|gene 33 protein Length = 322 Score = 35.8 bits (81), Expect = 0.029 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Frame = -3 Query: 2345 AERTLAQHAERDPDRAGRQRHVPHLEREHEHGDDRRHEAEHQAEADVRDHA-GDVRAAEV 2169 ++ +A +R+ DR + + + + EH + + EAE +A A+ A ++ AA Sbjct: 135 SDHEIAILMDREFDRQREEARLKAEQEKREHEERLKREAEEKARAEAEAKAKAEIEAAAR 194 Query: 2168 RELRGTGRAERQAQPAVVRERVADPVQHEPVVGPAREQARRPQQHA 2031 RE AER RER+ + + A E+A R +Q A Sbjct: 195 REAEAKAAAER-----AERERIEAEQRAQREAKEAAERAEREKQAA 235 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 32.7 bits (73), Expect = 0.25 Identities = 35/93 (37%), Positives = 42/93 (45%), Gaps = 1/93 (1%) Frame = -3 Query: 2303 RAGRQRHV-PHLEREHEHGDDRRHEAEHQAEADVRDHAGDVRAAEVRELRGTGRAERQAQ 2127 + GR R P L +H G + + Q AD +D G + EV L G GR Q Sbjct: 453 QGGRARCAGPRLRFDHS-GVGEQGRCQGQGRAD-QDGGGAHQGVEV--LGGRGRL--QGH 506 Query: 2126 PAVVRERVADPVQHEPVVGPAREQARRPQQHAG 2028 PA ER A VQH V GP R AR Q+ G Sbjct: 507 PAGQPERGA--VQHVGVPGPGRSLARSGQRQRG 537 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,348,184 Number of Sequences: 14420 Number of extensions: 202030 Number of successful extensions: 719 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 668 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 716 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1593168743 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig253 (3553 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542286.1|unknown 36 0.025 ref|YP_006601.1|Gp21 32 0.36 ref|NP_543108.1|putative tail fiber protein 32 0.36 >ref|NP_542286.1|unknown Length = 503 Score = 36.2 bits (82), Expect = 0.025 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 10/70 (14%) Frame = -2 Query: 2118 RGECRDEPPRRGAR----RCDGPGIPRVHARRRGIRDR------HPESAGNPRLRQRHAH 1969 R EC D+ G+R RC GP + RRR + D H + G R AH Sbjct: 171 RAECFDQAAMLGSRLFELRCAGPRAELIFERRRLLLDVGHALLVHRRNVGEAADRVGDAH 230 Query: 1968 RERARVHQGR 1939 R RVH GR Sbjct: 231 RRSGRVHVGR 240 >ref|YP_006601.1|Gp21 Length = 3433 Score = 32.3 bits (72), Expect = 0.36 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Frame = -1 Query: 388 VAGEVRSLAQRSASAAKEIKQLIGDSAEKVDSG-SALVARAGATMDEIVQAVRR-VTDIM 215 VA +V + Q +A EI+Q + E V+ + + T+ + + AV + +TD + Sbjct: 857 VAQQVTDINQSIDDSASEIRQQVDGQIESVNKSITENINSVNQTLSDNITAVNKSITDAV 916 Query: 214 GEISAASDEQSTGIEQVNRAVGQMDA 137 +I+ + D+Q I VN+ + + DA Sbjct: 917 SDINTSVDQQ---IADVNKTLTEGDA 939 >ref|NP_543108.1|putative tail fiber protein Length = 490 Score = 32.3 bits (72), Expect = 0.36 Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 1/134 (0%) Frame = -1 Query: 913 DAIAHFER-IAGGDLTQPVSVFSTNEIGRLFGGIKRMQDAVTTMVQAVHRGTESIDVGAR 737 D + FE +A + + S + G+ ++++ T+ V + T +++ Sbjct: 101 DVVKRFEEMVAQAQQSAEAAAESERQAGQHAADAQKIKGDCQTLADNVQQNTNAVE---- 156 Query: 736 EIASGNIDLSQRTEEQAASLQETASSMEQLTGTVRQNAENARQASQLAVNASDIATQGGD 557 + +QR E+ A+ +++TA VRQ+AE A+QA+ A A D Sbjct: 157 -------ENTQRVEQLASQVEDTAEE-------VRQDAEAAKQAASDAEQARDDIDVALS 202 Query: 556 VVGQVVSTMQDIAA 515 + + + +IAA Sbjct: 203 ATLKTANHLSEIAA 216 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,536,353 Number of Sequences: 14420 Number of extensions: 172008 Number of successful extensions: 815 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 731 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 814 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1742836585 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig254 (3704 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958209.1|gene 33 protein 32 0.49 >ref|NP_958209.1|gene 33 protein Length = 322 Score = 32.0 bits (71), Expect = 0.49 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 5/102 (4%) Frame = -3 Query: 2772 DRRRFEQHPRRRDHAEHL-----QKARVELAAAMRVAVLHVAGDVVERGGDPVGAHAQRI 2608 + R + +R+H E L +KAR E A + + A E A +RI Sbjct: 152 EEARLKAEQEKREHEERLKREAEEKARAEAEAKAKAEIEAAARREAEAKAAAERAERERI 211 Query: 2607 EQRPQFRMRAGVMLLREERVEFVAVVLDQPRMAAEAELVAHE 2482 E + + A R ER + A+ ++ + EAE + E Sbjct: 212 EAEQRAQREAKEAAERAEREKQAAIEAERRKAQEEAERIRRE 253 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,189,930 Number of Sequences: 14420 Number of extensions: 195038 Number of successful extensions: 813 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 743 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 812 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1824757936 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig255 (3265 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 41 0.001 ref|NP_958209.1|gene 33 protein 38 0.008 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 40.8 bits (94), Expect = 0.001 Identities = 26/58 (44%), Positives = 29/58 (50%) Frame = +2 Query: 1817 RAAVRARPGDNGTAPARRAPRHPDDTRPFRPDTAPHRAAVQREQGLRPRDHQRHRPVP 1990 R VRARPG RR P HP+ R RP R +R LRPR H+RHR P Sbjct: 192 RVRVRARPGPGAARRPRRRP-HPEHPRAVRPRRRTGRRH-RRRASLRPR-HRRHRSTP 246 >ref|NP_958209.1|gene 33 protein Length = 322 Score = 37.7 bits (86), Expect = 0.008 Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 3/187 (1%) Frame = +3 Query: 309 RLVHDVLQPLLRAARMPRVHPTRERVG-RQRFQRIAAGQDLAAERVVPLRVALPAQRVEP 485 + V D L L AR P E+ + + AA + LA + +A+ R Sbjct: 89 KTVRDRLDELKAKARQPLTDYEEEQARIKAEEEAKAAAEALAKQIESDHEIAILMDREFD 148 Query: 486 VVLDQHRRAFERE-REHVDRADVAVEQVFRIDALAPHLRVEVHPAGREAAVAQDLVER-E 659 ++ R E+E REH +R E+ R +A A + E+ A R A A+ ER E Sbjct: 149 RQREEARLKAEQEKREHEERLKREAEEKARAEAEAK-AKAEIEAAARREAEAKAAAERAE 207 Query: 660 RQLLDAVRELVGVPAVLRIAAVRVDAAEHAEREGVRDLVMERMTGERRVVRLDVHANLVL 839 R+ ++A + R +AAE AERE + ER + R+ A Sbjct: 208 RERIEAEQ---------RAQREAKEAAERAEREKQAAIEAERRKAQEEAERIRREAEAKE 258 Query: 840 ESVLHEE 860 ++ + EE Sbjct: 259 QARIAEE 265 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,140,451 Number of Sequences: 14420 Number of extensions: 224168 Number of successful extensions: 884 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 807 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 882 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1588631689 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig256 (3776 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945099.1|gp68 33 0.22 ref|NP_817725.1|gp48 33 0.29 ref|NP_536415.1|putative chromosome partitioning protein 32 0.38 >ref|NP_945099.1|gp68 Length = 273 Score = 33.1 bits (74), Expect = 0.22 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 3/106 (2%) Frame = +1 Query: 934 LSATENEMREPMHPADACDAYRILVESGRSIEEIADLYGVHPKTVQRRLKLARVSPKLVD 1113 + + NE+RE P + + +++ G + + IA ++GV TV+ LKL + D Sbjct: 119 MMVSTNEIREEDSPINRAEKMARMLDVGHTEDAIAVVFGVEVPTVRSALKLLDCCMAVRD 178 Query: 1114 LFRTGEIKLDQMQALALSDSHDEQEA---AWFDAEPYNRDAHAIRR 1242 +I + LA S DEQ A A DA ++ HA R Sbjct: 179 AVEAEQITVSHALKLA-KLSPDEQRAKVQALIDAAD-GKEGHARSR 222 >ref|NP_817725.1|gp48 Length = 295 Score = 32.7 bits (73), Expect = 0.29 Identities = 42/169 (24%), Positives = 60/169 (35%) Frame = +1 Query: 994 YRILVESGRSIEEIADLYGVHPKTVQRRLKLARVSPKLVDLFRTGEIKLDQMQALALSDS 1173 Y + ESG SI+ + L PKT+ L+LA D + E+ Q + L Sbjct: 125 YLLETESG-SIDNVRFLI---PKTLPEALRLA------ADQYERAELAEQQNKMLEARIE 174 Query: 1174 HDEQEAAWFDAEPYNRDAHAIRRRFVRDEQSFVSNRVAKXXXXXXXXXXXXXXRRDLFSA 1353 D A +A +A R+ F R+ Q + K RR Sbjct: 175 KDAPLVAKAEAHSNADNASVNRQAFAREVQQWG----IKQGISILQEHVYELLRRKGMLV 230 Query: 1354 AEDAWYRDHALMLRLATEQLEALGASVLAEGWAWVKAMPERDHATRSQF 1500 + D R+HA A GWAW K + DHAT + + Sbjct: 231 SGDRSDRNHAT-------------AQAAKAGWAWTKKDVKNDHATATTY 266 >ref|NP_536415.1|putative chromosome partitioning protein Length = 273 Score = 32.3 bits (72), Expect = 0.38 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 3/106 (2%) Frame = +1 Query: 934 LSATENEMREPMHPADACDAYRILVESGRSIEEIADLYGVHPKTVQRRLKLARVSPKLVD 1113 + + NE+RE P + + +++ G + + IA +GV TV+ LKL + D Sbjct: 119 MMVSTNEIREEDSPINRAEKMARMLDVGHTEDAIAVAFGVEVPTVRSALKLLDCCMAVRD 178 Query: 1114 LFRTGEIKLDQMQALALSDSHDEQEA---AWFDAEPYNRDAHAIRR 1242 +I + LA S DEQ A A DA ++ HA R Sbjct: 179 AVEAEQITVSHALKLA-KLSPDEQRAKVQALIDAAD-GKEGHARSR 222 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,148,119 Number of Sequences: 14420 Number of extensions: 280103 Number of successful extensions: 1053 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 894 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1053 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1844990079 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig257 (4643 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542289.1|unknown 37 0.014 ref|NP_958209.1|gene 33 protein 34 0.12 >ref|NP_542289.1|unknown Length = 134 Score = 37.4 bits (85), Expect = 0.014 Identities = 32/106 (30%), Positives = 46/106 (43%) Frame = +2 Query: 3122 RSKRNSRHSSAPLNSGVLADSRRRNWPGSERSDVSRNACQPVKRCFSASPSALKNSLSGA 3301 R +++ S P SG + +RRR W S + + C R L N+ A Sbjct: 28 RRRKSYSERSGPDGSGSCS-ARRRRWAPVPTSKTASSRCITSMR--RGGRPTLSNATGAA 84 Query: 3302 SVCVRRNASSLPRLRPVSRTSPRALRPRTSIRSPYGGFARRMPGPS 3439 S R SS+P++R SR+ A+ PRT G +R PG S Sbjct: 85 S---GRATSSMPKIRMASRSRYCAMPPRTRSMRGRGRRSRLRPGSS 127 >ref|NP_958209.1|gene 33 protein Length = 322 Score = 34.3 bits (77), Expect = 0.12 Identities = 47/185 (25%), Positives = 70/185 (37%), Gaps = 4/185 (2%) Frame = +1 Query: 3634 GDVVLLELFEAEPALDAGRHAERD-LRGFXXXXXXXXXXXXXXXXXXPARQAQDAGREVL 3810 G ++ EL E +DA R RD L A + A E L Sbjct: 70 GKDLVAELKEIPKLIDANRKTVRDRLDELKAKARQPLTDYEEEQARIKAEEEAKAAAEAL 129 Query: 3811 AQRRRPLVETPAALEQRLARCVEVQRALVDGQEREHAHVRRTGVDARARAGFLPHPVADR 3990 A++ E +++ R E R + ++REH + + +ARA A+ Sbjct: 130 AKQIESDHEIAILMDREFDRQREEARLKAEQEKREHEERLKREAEEKARAEAEAKAKAE- 188 Query: 3991 ILHTQRREFE--ALQRRLDRGDVDA-QRLRRREPAFPRLLERERVDVLFVAVRAVRRSSA 4161 I RRE E A R +R ++A QR +R ERE+ A+ A RR + Sbjct: 189 IEAAARREAEAKAAAERAERERIEAEQRAQREAKEAAERAEREKQ----AAIEAERRKAQ 244 Query: 4162 ESGSR 4176 E R Sbjct: 245 EEAER 249 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,616,170 Number of Sequences: 14420 Number of extensions: 352533 Number of successful extensions: 1333 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1153 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1331 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2282586067 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig258 (4254 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542284.1|unknown 35 0.051 ref|NP_944303.1|conserved phage mega protein 33 0.33 >ref|NP_542284.1|unknown Length = 434 Score = 35.4 bits (80), Expect = 0.051 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = -3 Query: 3784 GICDEPEQSDPGHGIRKPAAGRDREEVV 3701 G C+EP + D GHG+R AAGR + +V Sbjct: 371 GPCEEPHEGDAGHGLRDLAAGRVHDPIV 398 >ref|NP_944303.1|conserved phage mega protein Length = 4602 Score = 32.7 bits (73), Expect = 0.33 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 4/79 (5%) Frame = -3 Query: 3226 PERAAPAGSAGDAEQPAER--RARDHDGPWRHAPEHQRDEGDQRGGQVARRDDRIGPDRV 3053 PE+ + + GD A+R ++RD P + D GDQ G +V R DR G Sbjct: 1497 PEQPSGRDAGGDRGGAAKRNRQSRDAGEPAVRGAAAEADAGDQHGREVG-RGDRAGAGDG 1555 Query: 3052 IERG--EQQPDDGRVHAGE 3002 +RG + DD RV GE Sbjct: 1556 NDRGPVSRVGDDYRVKPGE 1574 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,211,315 Number of Sequences: 14420 Number of extensions: 263063 Number of successful extensions: 1073 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 905 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1071 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 2098099158 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig259 (5409 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_695123.1|hypothetical protein 33 0.42 >ref|NP_695123.1|hypothetical protein Length = 843 Score = 32.7 bits (73), Expect = 0.42 Identities = 45/184 (24%), Positives = 66/184 (35%), Gaps = 14/184 (7%) Frame = +1 Query: 580 GHWENHYRQHGETFLRDAAGNPVYGGNVSIGGQNMTVAPNAFAPQRGDQENWLYALGLNG 759 G W RQ E ++ P G +SIGG + N A +GDQ N GL G Sbjct: 154 GTWPLQPRQGYEEAIQKDGSTPEIGCTLSIGG----IVANGAAGPKGDQGN----DGLPG 205 Query: 760 RLDSGWRLSGVVSAYDVSRDVLRAASTVQGGAGTLFQG----DGTGWRTLDLKAEAPVVK 927 + G + + Y +S + + TL +G T W DL +E K Sbjct: 206 K--DGVGIKTTIVTYGISDNENTQPTNWSSQLPTLVKGKYLWTKTAWTYTDLSSETGYQK 263 Query: 928 GHTFTFGYH-------YDNYFLRNVTYNTADWLAG---PTTSLASVYRGDTRTQALFGQD 1077 + G + D +RN T A +G PT +S Q L+ + Sbjct: 264 TYIAKDGNNGNDGLPGKDGVGIRNTTITYAVGTSGTVAPTNGWSSQVPNVPAGQYLWTKS 323 Query: 1078 AWRF 1089 W + Sbjct: 324 IWDY 327 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,038,054 Number of Sequences: 14420 Number of extensions: 370290 Number of successful extensions: 1309 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1142 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1309 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2658732741 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig260 (4257 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542342.1|unknown 35 0.051 ref|NP_064745.1|gp7 33 0.25 >ref|NP_542342.1|unknown Length = 164 Score = 35.4 bits (80), Expect = 0.051 Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 9/116 (7%) Frame = +1 Query: 244 PSWLACGSGAPC--TRACPR*TRVEAAPNGRSTTRHKRTKS*AQPPPTESR-------TH 396 P+ C S P TR C R +R +AP GRS +R+ P P+ SR + Sbjct: 10 PTPTTCSSPLPISRTRDCARSSR--SAPTGRSAPWSRRSPK--SPRPSASRLANPRWSSL 65 Query: 397 ARAFPPHPPRLTARQAFDTRKIACA*PPRTGSAARLMPRFVFCTAGPALMTTRAPC 564 AR+FP PP TR + A PR S + + P A P + C Sbjct: 66 ARSFPFSPP---------TRNTSAALWPRDRSCSSMAPSIRKTAASPIARSAATSC 112 >ref|NP_064745.1|gp7 Length = 540 Score = 33.1 bits (74), Expect = 0.25 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%) Frame = +1 Query: 2032 ESSRQTTSRNGCAAY--VTTSRARRSPSGFNGSRAASTGT*SRLVPG*AKCACTSAPAIA 2205 +++ T+ N A+ VTTS + S N + +AST T A A TSA + Sbjct: 217 QAAAATSETNAAASESTVTTSATNAATSEANAATSASTATTQ------ATNAATSASTAS 270 Query: 2206 STLSNEAQRSSSCYAVATSQRSSATLSALSR 2298 ++ +N A ++ + A+S SSAT + S+ Sbjct: 271 TSATNAATSETNAASSASSAASSATSAQASK 301 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,202,674 Number of Sequences: 14420 Number of extensions: 377900 Number of successful extensions: 1342 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1163 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1337 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 2099691039 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig261 (6811 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046573.1|putative thioredoxin 48 2e-05 ref|YP_195157.1|sliding clamp loader gp44 44 2e-04 ref|YP_006865.1|putative thioredoxin 44 3e-04 ref|NP_932464.1|hypothetical protein 42 9e-04 ref|NP_899326.1|gp44 41 0.002 ref|NP_046716.1|thioredoxin 39 0.009 ref|NP_049632.1|Dda DNA helicase 34 0.23 >ref|NP_046573.1|putative thioredoxin Length = 137 Score = 47.8 bits (112), Expect = 2e-05 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Frame = -1 Query: 4816 QDVVKSDKPVLVDFWAEWCGPCKMIAPILDEVAKDYGDKLQIAKINVDD----NQATPAK 4649 Q V S KP + + C PC+ I P L+EV K +KL++ +N+++ N K Sbjct: 40 QKEVDSKKPKFIYVYETSCPPCQEIKPELNEVIKK--EKLKVQALNIEEKENYNTEFLDK 97 Query: 4648 FGVRGIPTLILFKNGAAAAQKVGALSKSQLTAFLDSH 4538 + + PT++ +K+G + G S SQ+ F D + Sbjct: 98 YNLNKTPTILYYKDGKEKDRLEGYRSASQIEKFFDKN 134 >ref|YP_195157.1|sliding clamp loader gp44 Length = 315 Score = 44.3 bits (103), Expect = 2e-04 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 6/164 (3%) Frame = +3 Query: 5598 LFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGV 5777 L TG+ GVGKTT+++ + + V + DEGRF+D V NR V Sbjct: 43 LLTGSAGVGKTTIAKAVCEQIGASYIVINGS----------DEGRFLDTVR-----NR-V 86 Query: 5778 DEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 5957 + A + AP KV +IDE T+ ++ +EE + +FI K Sbjct: 87 RQFATTVSLTSGAP----HKVVIIDEADNTTHDVQLSLRTAVEEFHGNCRFIFTCNFQNK 142 Query: 5958 IPVTVLSRC--LQFNLK----QMPAGHIVSHLERILGEEQITFE 6071 I + SRC + F +K Q+ G L+ IL + +I ++ Sbjct: 143 IIEPLHSRCTVIDFRIKKEQEQILQGQFFVRLKGILDDNKIVYD 186 >ref|YP_006865.1|putative thioredoxin Length = 96 Score = 43.5 bits (101), Expect = 3e-04 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Frame = -1 Query: 4762 CGPCKMIAPILDEVAKDYGDKLQIAKINVDDNQATPAKFGVRGIPTLIL---FKNGAAAA 4592 C PCKM P+ D+V DY L+I K DN KFGVR +P ++L NG A Sbjct: 13 CNPCKMFEPVFDKVVNDY--NLEIHK--ETDNTELMQKFGVRQVPVVVLADRLPNGRVEA 68 Query: 4591 QKV 4583 + Sbjct: 69 NHI 71 >ref|NP_932464.1|hypothetical protein Length = 75 Score = 42.0 bits (97), Expect = 9e-04 Identities = 20/53 (37%), Positives = 28/53 (52%) Frame = -1 Query: 4777 FWAEWCGPCKMIAPILDEVAKDYGDKLQIAKINVDDNQATPAKFGVRGIPTLI 4619 F AEWC CKM+ P+L V Y D ++ D+ AK +R +PTL+ Sbjct: 5 FGAEWCANCKMVKPMLANVEYTYVD------VDTDEGVELTAKHHIRSLPTLV 51 >ref|NP_899326.1|gp44 Length = 318 Score = 40.8 bits (94), Expect = 0.002 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 4/170 (2%) Frame = +3 Query: 5496 RKWRPKDFASLVGQEHVVRALTHALDGERLHHAYLFTGTRGVGKTTLSRIFAKALNCETG 5675 +K+RP+ V E V + +D ++ + L + + G GKTT++R + E Sbjct: 14 QKYRPQSIKDCVLPERVRKLFQKMVDDNQIPNMLLCSSSPGTGKTTVARAVLADMGYEV- 72 Query: 5676 VTSQPCGVCRACREIDEGRFVDYVEMDAASNRGV----DEMAALLERAVYAPVDARFKVY 5843 + ++A+S+RG+ +++ A ++ K Sbjct: 73 -----------------------LFVNASSSRGIGLVQNDLPAFCSTVSFS---GNPKAV 106 Query: 5844 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQF 5993 ++DE LT A A+ +E+ +V+F+L QKI + SR +F Sbjct: 107 ILDEADNLTPDAQKALRGLIEQYSKNVRFVLTCNYAQKILTPIRSRLQEF 156 >ref|NP_046716.1|thioredoxin Length = 80 Score = 38.5 bits (88), Expect = 0.009 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = -1 Query: 4762 CGPCKMIAPILDEVAKDYGDKLQIAKINVDDNQATPAKFGVRGIP-TLILFKNGAAAAQK 4586 C PCKM++ L++V +Q ++V A+FGV G+P T++L G + Sbjct: 11 CNPCKMVSNYLEQV------NIQFETVDVTQEPEVAARFGVMGVPVTILLSDQGEEVNRS 64 Query: 4585 VG 4580 VG Sbjct: 65 VG 66 >ref|NP_049632.1|Dda DNA helicase Length = 439 Score = 33.9 bits (76), Expect = 0.23 Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 3/148 (2%) Frame = +3 Query: 5532 GQEHVVRALTHALDGERLHHAYLFTGTRGVGKTTLSRIFAKALNCETG---VTSQPCGVC 5702 GQ++ + A+ E+ HH + G G GKTTL++ +AL G + + P Sbjct: 9 GQKNAFNIVMKAIK-EKKHHVTI-NGPAGTGKTTLTKFIIEALISTGGTGIILAAPTHAA 66 Query: 5703 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAF 5882 + G+ + N E L E+ P A+ +V + DEV M F Sbjct: 67 KKILSKLSGKEASTIHSILKINPVTYEENVLFEQK-EVPDLAKCRVLICDEVSMYDRKLF 125 Query: 5883 NAMLKTLEEPPPHVKFILATTDPQKIPV 5966 +L T+ PP I + Q PV Sbjct: 126 KILLSTI---PPWCTIIGIGDNKQIRPV 150 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,826,536 Number of Sequences: 14420 Number of extensions: 491875 Number of successful extensions: 1982 Number of sequences better than 0.5: 7 Number of HSP's better than 0.5 without gapping: 1631 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1977 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3323079366 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig262 (5019 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_803630.1|ORF064 33 0.38 >ref|NP_803630.1|ORF064 Length = 182 Score = 32.7 bits (73), Expect = 0.38 Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 6/96 (6%) Frame = +3 Query: 2178 PPPRIGISIGDSIAALHGVIGALMALHHRKVNGGAGQVVDVALYEAVFN------MMESV 2339 P P + IS G+++A++ V+ H+R GG + L ++N +++ + Sbjct: 72 PRPSVAISSGENVASISNVMDYYNKEHNRNPRGGFAKEAAQFLERCIYNEPLEKQLLQVL 131 Query: 2340 VPEYGVYGMVRERTGASLPGIVPSNTYACRDGSIVI 2447 + YG V + T + P NT + + G + + Sbjct: 132 IQILAAYGRVLKNTDGT-PLYELPNTSSSKSGGVQV 166 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,803,315 Number of Sequences: 14420 Number of extensions: 329200 Number of successful extensions: 1285 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1282 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2455537411 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig263 (5569 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,101,764 Number of Sequences: 14420 Number of extensions: 322716 Number of successful extensions: 1321 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1166 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1320 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2741573914 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig264 (4923 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,358,576 Number of Sequences: 14420 Number of extensions: 392503 Number of successful extensions: 1463 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1270 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1461 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2429289940 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig265 (7258 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 35 0.15 ref|NP_958266.1|hypothetical protein 33 0.33 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 34.7 bits (78), Expect = 0.15 Identities = 40/118 (33%), Positives = 47/118 (39%), Gaps = 12/118 (10%) Frame = +3 Query: 1812 FAWRRIRAGSAAAVQSPYRAGRSRTSPAQLRRVRFR----VEPDRDMMA-HPRQDHPSFR 1976 F RR+R ++P A R+R P RRVR R + P RD HP DHP R Sbjct: 3 FDARRLRRARPPHTRTP--APRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRR 60 Query: 1977 AEALRWCG--THAMRERTLDVT-----DPYTGTRVGTAPLASVDDVRAAFDYAMAYRP 2129 A + G H RT T P G V A AA +YA A RP Sbjct: 61 APSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRP 118 >ref|NP_958266.1|hypothetical protein Length = 438 Score = 33.5 bits (75), Expect = 0.33 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Frame = -1 Query: 3907 DRDPVSPCLP----PSPYRPSGAGATHPPRTGAAGTPPSPLH*RRRPATPDCA-PSPATG 3743 D P+ P +P P P AGA HPPR A P P P+C P+P T Sbjct: 312 DLAPMHPPIPELTAPEPVPTFAAGAPHPPRVHARIPDPDP------DGEPECVDPAPETH 365 Query: 3742 SQSSRHP 3722 S + P Sbjct: 366 SHPAPAP 372 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,139,762 Number of Sequences: 14420 Number of extensions: 680064 Number of successful extensions: 2187 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1760 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2174 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3551675315 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig266 (5813 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_510947.1|similar to phage bIL170 l16 35 0.068 >ref|NP_510947.1|similar to phage bIL170 l16 Length = 989 Score = 35.4 bits (80), Expect = 0.068 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 12/149 (8%) Frame = +2 Query: 1511 IANYSFAIGLFALGLSGW-QMLASLAIGAVLVYGFMNLTGYMGQKTGVPFPVISRMSFGI 1687 +A S +F L L G + + S + LV G M L MG + P+++ ++ + Sbjct: 527 VAISSVLTNVFGLSLFGVIKQILSFVRTSSLVTGAMQLL--MGVFGSISAPILAVIA--V 582 Query: 1688 YGAMLPAMI---------RAVIAIAWFGIQTYLASVVLRVL--LTAIWPGLAAFDQNAIF 1834 GA + ++ R I AW G++T ++ + V+ LT +W + + Q + Sbjct: 583 IGAFIGVLVYLWKTNENFRNTITEAWNGVKTAVSGAIQGVVGWLTELWGKIQSTLQPIMP 642 Query: 1835 GLSTLGWITFVAIWLVQIGILTYGMEMVR 1921 L LG I + ++ IGI+T M +++ Sbjct: 643 ILQVLGQIFMQVLGVLVIGIITNVMNIIQ 671 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,025,402 Number of Sequences: 14420 Number of extensions: 363919 Number of successful extensions: 1442 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1222 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1441 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2841719535 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig267 (7122 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 35 0.11 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 35.0 bits (79), Expect = 0.11 Identities = 43/128 (33%), Positives = 51/128 (39%), Gaps = 17/128 (13%) Frame = +2 Query: 4760 RRRAPRCHPDPVRPTVAGRRLATRPSA-GGREHARA--------DLGARCRDDRTCECAT 4912 R RAP C PDP P V P+A E+A A D GA R T Sbjct: 81 RTRAPECAPDP-GPAVHPAAPGCAPAAPAAPEYAPALRPRAPECDRGAHHLRTRAPRTRT 139 Query: 4913 QLSRPRGGHAKLR*TAEDRRHVPCGRAAARPRRYEPGAALEFHDE--ARGAGWRVTV--- 5077 + + P G A++R EDRR R RR +P + H AR G RV V Sbjct: 140 R-AVPLGPGARVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRAR 198 Query: 5078 ---GGARR 5092 G ARR Sbjct: 199 PGPGAARR 206 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,218,957 Number of Sequences: 14420 Number of extensions: 523720 Number of successful extensions: 1911 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1544 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1903 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3482636270 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig268 (5955 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,497,658 Number of Sequences: 14420 Number of extensions: 426250 Number of successful extensions: 1457 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1274 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1457 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2914504722 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig269 (7924 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_859265.1|hypothetical protein 39 0.006 ref|NP_859099.1|hypothetical protein 39 0.006 ref|NP_050557.1|hypothetical protein 39 0.006 ref|NP_049519.1|putative tail fiber protein 39 0.006 ref|NP_612899.1|hypothetical protein 39 0.008 ref|YP_164321.1|hypothetical protein 35 0.16 ref|YP_195210.1|virion structural protein 33 0.35 >ref|NP_859265.1|hypothetical protein Length = 645 Score = 39.3 bits (90), Expect = 0.006 Identities = 101/447 (22%), Positives = 141/447 (31%), Gaps = 45/447 (10%) Frame = +1 Query: 6706 ALMAAGGLKERAVTSVRTRIGQPVPIRGADGKTVS-------VDSQTIGRILNSGDASSL 6864 A+ AAG +E + TR G+ GAD + + ++ G IL +A+++ Sbjct: 176 AVTAAGNAEESS-----TRAGESEKAAGADAEKARQHAEKARLAQESAGEILKRAEAATV 230 Query: 6865 AAGRTRVTLDGEAVKVSPDG-TLRVGDKVLTYDNTPIRVLDRASAKRL------------ 7005 +A R + P G T GD + P+ A K Sbjct: 231 SAEEARRMAENARGPRGPQGETGPKGDVGPKGETGPVGPQGPAGPKGERGDVGAQGAVGP 290 Query: 7006 --PPGKSVVLGEDGTLSVVSVSPKAWTNGTRVD-----------DVTGT-------GERM 7125 P G+ GE G + + G + D D G GER Sbjct: 291 AGPRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQGPKGERG 350 Query: 7126 SFGPDGEMSVTPKIVAKTPLDVLQHVLDQASDAYRQTVAGAQAPRRLAQTAAEGEAASVS 7305 GP G M + P + A + G Q PR + G AA+V Sbjct: 351 EAGPQGPMGARGERGETGP----RGEPGPAGPRGERGETGPQGPR--GEPGPAGSAANV- 403 Query: 7306 ADARSTRRNSEEHARVQQQRDETDAERSTTASANRRSADTQSMRWRPVAADE----PAGP 7473 ADA + ++ + + DET A A A+ + AA P G Sbjct: 404 ADATTAQKGIVQLSSATDSDDETKAATPKAVKAAMDVANEAKTKAEEAAAGGGVPGPKGD 463 Query: 7474 GTRAKPDGAPPRVNAKVVDLTDDAPVARAATSDPAGIAVPRGPSAEPMDVGDRTVYVVRS 7653 P G P + D PV PAG A P GP D G+R + Sbjct: 464 KGDTGPAG-PAGPKGDKGERGDTGPVGATGERGPAGDAGPAGPQGPKGDRGERGETGLTG 522 Query: 7654 GATPDAPGARPPSPRPQDFEEPVIVVAGEHDAALAPELANRWQKPVYAAAPDAFGADGQL 7833 A P P + P + P GE AA PV A P D Sbjct: 523 NAGPQGPKGDTGAAGPAGPQGP----KGETGAA----------GPVGATGPQGPKGD--- 565 Query: 7834 RAGARVLRFDPAPETVAAAHETG-LPD 7911 G +RF P + + G PD Sbjct: 566 -PGETQIRFRLGPGNIIETNSHGWFPD 591 >ref|NP_859099.1|hypothetical protein Length = 645 Score = 39.3 bits (90), Expect = 0.006 Identities = 101/447 (22%), Positives = 141/447 (31%), Gaps = 45/447 (10%) Frame = +1 Query: 6706 ALMAAGGLKERAVTSVRTRIGQPVPIRGADGKTVS-------VDSQTIGRILNSGDASSL 6864 A+ AAG +E + TR G+ GAD + + ++ G IL +A+++ Sbjct: 176 AVTAAGNAEESS-----TRAGESEKAAGADAEKARQHAEKARLAQESAGEILKRAEAATV 230 Query: 6865 AAGRTRVTLDGEAVKVSPDG-TLRVGDKVLTYDNTPIRVLDRASAKRL------------ 7005 +A R + P G T GD + P+ A K Sbjct: 231 SAEEARRMAENARGPRGPQGETGPKGDVGPKGETGPVGPQGPAGPKGERGDVGAQGAVGP 290 Query: 7006 --PPGKSVVLGEDGTLSVVSVSPKAWTNGTRVD-----------DVTGT-------GERM 7125 P G+ GE G + + G + D D G GER Sbjct: 291 AGPRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQGPKGERG 350 Query: 7126 SFGPDGEMSVTPKIVAKTPLDVLQHVLDQASDAYRQTVAGAQAPRRLAQTAAEGEAASVS 7305 GP G M + P + A + G Q PR + G AA+V Sbjct: 351 EAGPQGPMGARGERGETGP----RGEPGPAGPRGERGETGPQGPR--GEPGPAGSAANV- 403 Query: 7306 ADARSTRRNSEEHARVQQQRDETDAERSTTASANRRSADTQSMRWRPVAADE----PAGP 7473 ADA + ++ + + DET A A A+ + AA P G Sbjct: 404 ADATTAQKGIVQLSSATDSDDETKAATPKAVKAAMDVANEAKTKAEEAAAGGGVPGPKGD 463 Query: 7474 GTRAKPDGAPPRVNAKVVDLTDDAPVARAATSDPAGIAVPRGPSAEPMDVGDRTVYVVRS 7653 P G P + D PV PAG A P GP D G+R + Sbjct: 464 KGDTGPAG-PAGPKGDKGERGDTGPVGATGERGPAGDAGPAGPQGPKGDRGERGETGLTG 522 Query: 7654 GATPDAPGARPPSPRPQDFEEPVIVVAGEHDAALAPELANRWQKPVYAAAPDAFGADGQL 7833 A P P + P + P GE AA PV A P D Sbjct: 523 NAGPQGPKGDTGAAGPAGPQGP----KGETGAA----------GPVGATGPQGPKGD--- 565 Query: 7834 RAGARVLRFDPAPETVAAAHETG-LPD 7911 G +RF P + + G PD Sbjct: 566 -PGETQIRFRLGPGNIIETNSHGWFPD 591 >ref|NP_050557.1|hypothetical protein Length = 645 Score = 39.3 bits (90), Expect = 0.006 Identities = 101/447 (22%), Positives = 141/447 (31%), Gaps = 45/447 (10%) Frame = +1 Query: 6706 ALMAAGGLKERAVTSVRTRIGQPVPIRGADGKTVS-------VDSQTIGRILNSGDASSL 6864 A+ AAG +E + TR G+ GAD + + ++ G IL +A+++ Sbjct: 176 AVTAAGNAEESS-----TRAGESEKAAGADAEKARQHAEKARLAQESAGEILKRAEAATV 230 Query: 6865 AAGRTRVTLDGEAVKVSPDG-TLRVGDKVLTYDNTPIRVLDRASAKRL------------ 7005 +A R + P G T GD + P+ A K Sbjct: 231 SAEEARRMAENARGPRGPQGETGPKGDVGPKGETGPVGPQGPAGPKGERGDVGAQGAVGP 290 Query: 7006 --PPGKSVVLGEDGTLSVVSVSPKAWTNGTRVD-----------DVTGT-------GERM 7125 P G+ GE G + + G + D D G GER Sbjct: 291 AGPRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQGPKGERG 350 Query: 7126 SFGPDGEMSVTPKIVAKTPLDVLQHVLDQASDAYRQTVAGAQAPRRLAQTAAEGEAASVS 7305 GP G M + P + A + G Q PR + G AA+V Sbjct: 351 EAGPQGPMGARGERGETGP----RGEPGPAGPRGERGETGPQGPR--GEPGPAGSAANV- 403 Query: 7306 ADARSTRRNSEEHARVQQQRDETDAERSTTASANRRSADTQSMRWRPVAADE----PAGP 7473 ADA + ++ + + DET A A A+ + AA P G Sbjct: 404 ADATTAQKGIVQLSSATDSDDETKAATPKAVKAAMDVANEAKTKAEEAAAGGGVPGPKGD 463 Query: 7474 GTRAKPDGAPPRVNAKVVDLTDDAPVARAATSDPAGIAVPRGPSAEPMDVGDRTVYVVRS 7653 P G P + D PV PAG A P GP D G+R + Sbjct: 464 KGDTGPAG-PAGPKGDKGERGDTGPVGATGERGPAGDAGPAGPQGPKGDRGERGETGLTG 522 Query: 7654 GATPDAPGARPPSPRPQDFEEPVIVVAGEHDAALAPELANRWQKPVYAAAPDAFGADGQL 7833 A P P + P + P GE AA PV A P D Sbjct: 523 NAGPQGPKGDTGAAGPAGPQGP----KGETGAA----------GPVGATGPQGPKGD--- 565 Query: 7834 RAGARVLRFDPAPETVAAAHETG-LPD 7911 G +RF P + + G PD Sbjct: 566 -PGETQIRFRLGPGNIIETNSHGWFPD 591 >ref|NP_049519.1|putative tail fiber protein Length = 645 Score = 39.3 bits (90), Expect = 0.006 Identities = 101/447 (22%), Positives = 141/447 (31%), Gaps = 45/447 (10%) Frame = +1 Query: 6706 ALMAAGGLKERAVTSVRTRIGQPVPIRGADGKTVS-------VDSQTIGRILNSGDASSL 6864 A+ AAG +E + TR G+ GAD + + ++ G IL +A+++ Sbjct: 176 AVTAAGNAEESS-----TRAGESEKAAGADAEKARQHAEKARLAQESAGEILKRAEAATV 230 Query: 6865 AAGRTRVTLDGEAVKVSPDG-TLRVGDKVLTYDNTPIRVLDRASAKRL------------ 7005 +A R + P G T GD + P+ A K Sbjct: 231 SAEEARRMAENARGPRGPQGETGPKGDVGPKGETGPVGPQGPAGPKGERGDVGAQGAVGP 290 Query: 7006 --PPGKSVVLGEDGTLSVVSVSPKAWTNGTRVD-----------DVTGT-------GERM 7125 P G+ GE G + + G + D D G GER Sbjct: 291 AGPRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQGPKGERG 350 Query: 7126 SFGPDGEMSVTPKIVAKTPLDVLQHVLDQASDAYRQTVAGAQAPRRLAQTAAEGEAASVS 7305 GP G M + P + A + G Q PR + G AA+V Sbjct: 351 EAGPQGPMGARGERGETGP----RGEPGPAGPRGERGETGPQGPR--GEPGPAGSAANV- 403 Query: 7306 ADARSTRRNSEEHARVQQQRDETDAERSTTASANRRSADTQSMRWRPVAADE----PAGP 7473 ADA + ++ + + DET A A A+ + AA P G Sbjct: 404 ADATTAQKGIVQLSSATDSDDETKAATPKAVKAAMDVANEAKTKAEEAAAGGGVPGPKGD 463 Query: 7474 GTRAKPDGAPPRVNAKVVDLTDDAPVARAATSDPAGIAVPRGPSAEPMDVGDRTVYVVRS 7653 P G P + D PV PAG A P GP D G+R + Sbjct: 464 KGDTGPAG-PAGPKGDKGERGDTGPVGATGERGPAGDAGPAGPQGPKGDRGERGETGLTG 522 Query: 7654 GATPDAPGARPPSPRPQDFEEPVIVVAGEHDAALAPELANRWQKPVYAAAPDAFGADGQL 7833 A P P + P + P GE AA PV A P D Sbjct: 523 NAGPQGPKGDTGAAGPAGPQGP----KGETGAA----------GPVGATGPQGPKGD--- 565 Query: 7834 RAGARVLRFDPAPETVAAAHETG-LPD 7911 G +RF P + + G PD Sbjct: 566 -PGETQIRFRLGPGNIIETNSHGWFPD 591 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 38.9 bits (89), Expect = 0.008 Identities = 67/271 (24%), Positives = 87/271 (32%), Gaps = 5/271 (1%) Frame = +1 Query: 7114 GERMSFGPDGEMSVTPKIVAKTPLDVLQHVLDQASDAYRQTVAGAQAPRRLAQTAAEGEA 7293 GER GP G M + P + A + G Q PR + G A Sbjct: 380 GERGETGPQGPMGARGERGETGP----RGEPGPAGPRGERGETGPQGPR--GEPGPAGSA 433 Query: 7294 ASVSADARSTRRNSEEHARVQQQRDETDAERSTTASANRRSADTQSMRWRPVAADE---- 7461 A+V ADA + ++ + + DET A A A+ + AA Sbjct: 434 ANV-ADATTAQKGIVQLSSATDSDDETKAATPKAVKAAMDVANEAKTKAEEAAAGGGVPG 492 Query: 7462 PAGPGTRAKPDGAPPRVNAKVVDLTDDAPVARAATSDPAGIAVPRGPSAEPMDVGDRTVY 7641 P G P G P + D PV PAG A P GP D G+R Sbjct: 493 PKGDKGDTGPAG-PAGPKGDKGERGDTGPVGATGERGPAGDAGPAGPQGPKGDRGERGET 551 Query: 7642 VVRSGATPDAPGARPPSPRPQDFEEPVIVVAGEHDAALAPELANRWQKPVYAAAPDAFGA 7821 + A P P + P + P GE AA PV A P Sbjct: 552 GLTGNAGPQGPKGDTGAAGPAGPQGP----KGETGAA----------GPVGATGPQGPKG 597 Query: 7822 DGQLRAGARVLRFDPAPETVAAAHETG-LPD 7911 D G +RF P + + G PD Sbjct: 598 D----PGETQIRFRLGPGNIIETNSHGWFPD 624 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 34.7 bits (78), Expect = 0.16 Identities = 40/141 (28%), Positives = 48/141 (34%) Frame = +3 Query: 5229 PRGRQPDVRFGERARDPARAVAGAHQADAGEEHARVGAEKIRRLGSRESAAHALSHRRGR 5408 PRG+ PD R + RA G A AG H + G A L RRG Sbjct: 323 PRGK-PDQRVQRADQPVQRAERGLRDAGAGLPH---------QAGCGYLQADCLQDRRG- 371 Query: 5409 RHDPGAVGAASEPVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVRRRPRRTAA 5588 PG GA +P + PVRR PRR A Sbjct: 372 --GPGGAGA-DQPAARRGVQGQAGRRTVERRGLQGADAGGIRARRDDQEPVRRLPRRRAG 428 Query: 5589 LCGARFGRRERLQEGAARFLR 5651 +C R +R +EG R LR Sbjct: 429 VC-----RADRRREGQVRRLR 444 >ref|YP_195210.1|virion structural protein Length = 1177 Score = 33.5 bits (75), Expect = 0.35 Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 13/102 (12%) Frame = +1 Query: 6694 ITNVALMAAGGLKERAVTSVRTRIGQPVPIRGADGKTVSVDS---QTIGRI-------LN 6843 IT + A G K VT T G + DG T+++DS TI RI L Sbjct: 265 ITRLKGGATGSFKSGDVTF--TGSGATTVSQSQDGSTITIDSIDTNTITRIRGSNGGTLT 322 Query: 6844 SGDASSLAAGRTRVTLDGEAVKVSPDG---TLRVGDKVLTYD 6960 SGD + L +G T V+ SPDG T+ D+ TYD Sbjct: 323 SGDVTFLGSGVT-------TVEQSPDGRTITISSTDQDTTYD 357 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.315 0.130 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,507,832 Number of Sequences: 14420 Number of extensions: 427634 Number of successful extensions: 1998 Number of sequences better than 0.5: 7 Number of HSP's better than 0.5 without gapping: 1571 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1982 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 3854164616 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig270 (5849 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_195210.1|virion structural protein 36 0.053 ref|NP_665958.1|putative glutaminase 35 0.090 ref|NP_817990.1|gp17 35 0.090 ref|NP_061643.1|phi PVL ORF 20 and 21 homologue 34 0.15 ref|YP_024421.1|Hypothetical protein 33 0.26 ref|YP_195253.1|hypothetical protein 33 0.45 ref|NP_892070.1|tail fiber protein 33 0.45 ref|NP_040730.1|pre-neck appendage protein 33 0.45 >ref|YP_195210.1|virion structural protein Length = 1177 Score = 35.8 bits (81), Expect = 0.053 Identities = 61/217 (28%), Positives = 85/217 (39%), Gaps = 25/217 (11%) Frame = +1 Query: 3535 AFGQAVTLSPQTFEYANDVSPGDKNALPRNYPSAMHGTGANATLHIGKDGQIDFRGSNTI 3714 +F ++T S TF N G N + + + T I Q+D GS TI Sbjct: 604 SFADSITTSSSTFSVFNT---GVTNINAFGAATTITMGAISGTTTIRNSLQVD--GSATI 658 Query: 3715 -DESAAVVAENGAHFVNDGRL----SGDFTLV-----------------RLLSGASGVNN 3828 +ES ++ NGA N+ L S D + L S +G NN Sbjct: 659 GNESGDIITVNGATNFNNEDLTLRGSSDNPIKIGRGGNAIATNTRVGYRALESNTTGANN 718 Query: 3829 GTISSGYTVGDNVNTGGATPSDNF-GLNTYVEGSGVYANGAGTTF-VNNGVMNVGAWNLT 4002 GY +NTG S + L + G G A G+ + V GV NVG LT Sbjct: 719 TAF--GYESSFVLNTGSNNTSFGYQALRSSGIGEGNVAFGSQSCISVTEGVGNVGVGTLT 776 Query: 4003 RNRLDLQNYAVAATDGARASNAGTINVGVN-ATTLDS 4110 + + NY V A A+ G+ NV + A+T DS Sbjct: 777 LSSVTDTNYNVCIGHYAGAALTGSGNVLIGPASTEDS 813 >ref|NP_665958.1|putative glutaminase Length = 191 Score = 35.0 bits (79), Expect = 0.090 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 4/94 (4%) Frame = +2 Query: 1265 IAHIRKATQGHILLENSHPF-MRELWGRH-WIFAHNGDLQDYAPDMDGSVYHPVGTTDSE 1438 + H R AT+G I L N+HPF +R+ G + AHNG APD+D + Sbjct: 66 LGHTRFATRGEISLRNAHPFEVRDRDGEPVAMLAHNGTWLS-APDVD------------D 112 Query: 1439 QAFCVLMQGLREAFPGAQP--PLPELFERVGELT 1534 +A M L E+ A+P P E+ GE T Sbjct: 113 RADSWYMARLMESIYCAEPARPFEEIVRATGETT 146 >ref|NP_817990.1|gp17 Length = 1183 Score = 35.0 bits (79), Expect = 0.090 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 2/109 (1%) Frame = +1 Query: 3775 SGDFTLVRLLSGASGVNNGTISSGYTVGDNV--NTGGATPSDNFGLNTYVEGSGVYANGA 3948 +GD ++ ++G+ G + +G G V + G A P+D+ Y+ + A Sbjct: 867 AGDMGDMQQHGMSAGLPPGPVGAG---GQPVQGSDGAALPTDSGRTEGYIPAGAGNTSVA 923 Query: 3949 GTTFVNNGVMNVGAWNLTRNRLDLQNYAVAATDGARASNAGTINVGVNA 4095 GT+FV +G+ N+GA + N L Q + AAT + A+ AG+ G A Sbjct: 924 GTSFV-SGLYNMGAEAI--NGLIDQAASAAATAASAAATAGSFGAGGQA 969 >ref|NP_061643.1|phi PVL ORF 20 and 21 homologue Length = 1261 Score = 34.3 bits (77), Expect = 0.15 Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 29/216 (13%) Frame = +1 Query: 3472 NDFLVRSVRNGALGSQTAYD-TAFGQAVTLSPQTFEYANDVSP--GDK--NALPRNYPSA 3636 ++ L V+N G+ YD QA+ + PQ D G++ N L +N Sbjct: 788 SNILAEIVQNVTDGTTIRYDDNGVAQALNIGPQGIRLNADKIDISGNREINLLIQNMRDK 847 Query: 3637 MHGTGANATLHIGKDG---QIDFRGSNTIDESAAVVAENGAHFVND-------GRLSGDF 3786 + T +L++ ++G ++ G D + V +N + + G+ S D Sbjct: 848 VDKTDIVNSLNLSREGLDINVNRIGIKGGDNNRYVQIQNDSIELGGIVQRTWRGKRSTDD 907 Query: 3787 TLVRLLSGASGVNNGTISSGYTVGDNVNTGGATPSDNFGLNTYVEGSGVYANGAGT---- 3954 RL G N T GG+ +FG++TY++G G +GT Sbjct: 908 IFTRLKDGHLRFRNNT------------AGGSLYMSHFGISTYIDGEGEDGGSSGTIQWW 955 Query: 3955 --TFVNNGVMNV------GAWNLT--RNRLDLQNYA 4032 T+ ++G+ + G LT NR+ L++YA Sbjct: 956 DKTYSDSGMNGITINSYGGVVALTSDNNRVVLESYA 991 >ref|YP_024421.1|Hypothetical protein Length = 741 Score = 33.5 bits (75), Expect = 0.26 Identities = 51/201 (25%), Positives = 73/201 (36%), Gaps = 1/201 (0%) Frame = +1 Query: 3727 AVVAENGAHFVNDGRLSGDFTLVRLLSGASGVNNGTISSGYTVGDNVNTGGATPSDNFGL 3906 A+ A NG + G + +GA+GV G +SG G+N + GA G Sbjct: 563 AIAAGNGGNSSVSGAGIVGLSWTGGRAGANGVQ-GYYASGGNGGNNSSNVGA----GAGA 617 Query: 3907 NTYVEGSGVYANGAGTTFVNNGVMNVGAWNLTRNRLDLQNYAVAATDGARASNAGTINVG 4086 ++ SGV G G T NG G R+ N G N G Sbjct: 618 SSGNAASGVSGGGGGGTGPGNG-------------------------GWRSGNGGGSNAG 652 Query: 4087 VNATT-LDSQVIGGLVAGGSFTNEAGGTIYLGRAAQYDPSSPEAANDVALSAHGYGILLG 4263 V + ++Q GG GG + G+ SS + + + +G G G Sbjct: 653 VGTSNGNNAQAAGG--GGGGNSAVWWDNAAAGKGGDGTASSGASGGNATGNGNGGG---G 707 Query: 4264 ASGTASNLGTIVIGTQTQNGA 4326 SG S LG G+ NG+ Sbjct: 708 GSGGTSILGNGTDGSAGGNGS 728 >ref|YP_195253.1|hypothetical protein Length = 3779 Score = 32.7 bits (73), Expect = 0.45 Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 21/190 (11%) Frame = +1 Query: 3643 GTGANATLHIGKDGQIDFRGSNTIDESAAVVAENGAHFVNDGRLSGDFTLVRLLSGASGV 3822 GT +G + + + N +D + VV DGR++G+F + +S G Sbjct: 2901 GTTYRTGGRLGINTTLGLQPENELDRNFVVVG--------DGRITGNFKIEDDISVDGGD 2952 Query: 3823 NNGTISSGYTVGDN---VNTGGATPSDNFGLNTYVEGSGVYANGAGTTFVNNGVMNVGA- 3990 N T + +N +N G NFG NT + + G + NN ++ +G+ Sbjct: 2953 INTTSEVFNFINNNANILNLIGDAQVINFGNNT--TNDQILSVGGSS---NNQIVRIGSN 3007 Query: 3991 ---------WNLTRNRLDLQNYAVAATD-------GARASNAGTINVGVNATTLDSQV-I 4119 N T +D+ + A A + GA + T+ +G T +D + + Sbjct: 3008 AGTSLLSVHPNSTNANVDIASVADNAANSCKVVIGGAWQNTDSTLTIGTYQTIVDGTLEV 3067 Query: 4120 GGLVAGGSFT 4149 GG +A G+ T Sbjct: 3068 GGQIAPGTGT 3077 >ref|NP_892070.1|tail fiber protein Length = 690 Score = 32.7 bits (73), Expect = 0.45 Identities = 59/232 (25%), Positives = 88/232 (37%), Gaps = 28/232 (12%) Frame = +1 Query: 3799 LLSGASGVNNGTISSGYTVGDN-------------VNTGGATP--SDNFGLNTYVEGSGV 3933 LLS N I +GY GD G P SD L+ V G Sbjct: 361 LLSFRLHTNRARIPAGYGAGDGQILTRAVWPDAWAAIDSGEVPLVSDAVWLSD-VSKRGC 419 Query: 3934 YANGAGTTFVN----NGVMNV--------GAWNLTRNRLDLQNYAVAATDGARAS-NAGT 4074 Y+ G G+T NG+ G LT D+Q+ A+ G NA Sbjct: 420 YSTGDGSTTFRMPDYNGIQPGSIKAPYFRGDGGLTDG--DVQSSALPNIKGTMTGGNAPA 477 Query: 4075 INVGVNATTLDSQVIGGLVAGGSFTNEAGGTIYLGRAAQYDPSSPEAANDVALSAHGYGI 4254 GV + + S + GG AG SFT G + AA+Y+P + N+V +A Sbjct: 478 TASGVFSLSGASSINGG--AGSSFTARFGDVDF--SAARYNPIYKDEVNEVRTNAVVGCY 533 Query: 4255 LLGASGTASNLGTIVIGTQTQNGAALASIGSTSGTLTNAGAIVVNGAAPGTP 4410 ++ +G+ N G+I A+++++ + G L + GTP Sbjct: 534 IIRLAGSYLNTGSI---DAAALAASISALSARVGVLEAKSQLFTIMYPEGTP 582 >ref|NP_040730.1|pre-neck appendage protein Length = 854 Score = 32.7 bits (73), Expect = 0.45 Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 12/134 (8%) Frame = +1 Query: 3802 LSGASGVNNGTISSGYTVGDNVNTGGATPSDNFGLNTYVEGSGVYANG-------AGTTF 3960 +S SG+ N +I++ +GD +N+ A S +N+ E SG+ + G AGT + Sbjct: 487 VSIGSGIENVSITNISGIGDGINSPVALVST---INSNPEISGLSSIGYPTVARVAGTDY 543 Query: 3961 VNNGVMNVGAW---NLTRNRLDLQNYAVAATDGARA--SNAGTINVGVNATTLDSQVIGG 4125 + + GA+ + ++ + + + +T G A S +G + + T+ + +I Sbjct: 544 NDGLTLFNGAFRASTTSSGKIHSEGFIMGSTSGCEASVSKSGILTSSSSKTSSERSLI-- 601 Query: 4126 LVAGGSFTNEAGGT 4167 GS T+EA GT Sbjct: 602 ---AGSSTSEATGT 612 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,076,188 Number of Sequences: 14420 Number of extensions: 389591 Number of successful extensions: 1756 Number of sequences better than 0.5: 8 Number of HSP's better than 0.5 without gapping: 1431 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1744 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2860302987 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig271 (8174 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817650.1|gp61 48 2e-05 ref|NP_046877.1|putative non-heme haloperoxidase 42 0.001 >ref|NP_817650.1|gp61 Length = 274 Score = 47.8 bits (112), Expect = 2e-05 Identities = 45/157 (28%), Positives = 65/157 (41%) Frame = -2 Query: 6181 VLVHGAWHGAWCYAHVAAALAARGYLSIARDLPAHGIHARFPASYLARPLDKDAFGAEPS 6002 V +HG A Y + LA RG+ A D HG P + Sbjct: 28 VFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFGH--------------- 72 Query: 6001 PVANTTLDDYATQVMQAVDDAYALGRGKVVLVGHSMGGLAITAAAERAPEKIAKIVYLAA 5822 T+++ ++A+D ALG + V VGHSMGG + A R PE++ LAA Sbjct: 73 -----TVEEMTRVTLRALD---ALGIDQAVFVGHSMGGGMVAEIAPRYPERV-----LAA 119 Query: 5821 FMPASGVPGLDYVRAPENKGELLGPLMLASPRVAGAL 5711 + LD E+ L PL A+ R++GA+ Sbjct: 120 IL-------LDAAAGKEHHANLKDPLR-ATQRLSGAV 148 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 41.6 bits (96), Expect = 0.001 Identities = 31/120 (25%), Positives = 46/120 (38%) Frame = -2 Query: 6181 VLVHGAWHGAWCYAHVAAALAARGYLSIARDLPAHGIHARFPASYLARPLDKDAFGAEPS 6002 V +HG A Y + LA G+ IA D HG P + Sbjct: 26 VFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTGH--------------- 70 Query: 6001 PVANTTLDDYATQVMQAVDDAYALGRGKVVLVGHSMGGLAITAAAERAPEKIAKIVYLAA 5822 T++D ++ +D+ L + + GHSMGG + A R P ++A V L A Sbjct: 71 -----TVEDMTRVTLKTLDE---LDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDA 122 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,108,853 Number of Sequences: 14420 Number of extensions: 569209 Number of successful extensions: 2328 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1917 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2323 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 3981826220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig272 (9320 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_047971.2|gp26 38 0.022 ref|YP_024843.1|Pas57 36 0.064 ref|NP_061549.1|Orf53 36 0.083 >ref|NP_047971.2|gp26 Length = 174 Score = 37.7 bits (86), Expect = 0.022 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = -3 Query: 7785 IHDNRWTAGEALPSERVLSEALGVSRITARKAIALLVEQGLI 7660 I R+ G+ LPSER + E LG+ R R+ +A LV +G++ Sbjct: 34 IATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGIL 75 >ref|YP_024843.1|Pas57 Length = 305 Score = 36.2 bits (82), Expect = 0.064 Identities = 30/99 (30%), Positives = 45/99 (45%) Frame = -2 Query: 8881 ARLLRGGRKYASSCARSSSLNTTSSAARLSRTCSIRDAFGIANTPGCASTHASATRITDT 8702 +R+ GG Y+ +CA S+ + S++A S + S A+T AST ASA+ T Sbjct: 175 SRISFGGEVYSLTCAPPSTSTSASASASTSASAS-------ASTSASASTSASASASTSA 227 Query: 8701 PRSRAISSSGERFGSRP*STGLYAIAGIRWSASHGSRSN 8585 S + S S S +T A GI + G S+ Sbjct: 228 SASSSASPSTTGSASPSTTTSTTAAPGITTTPVAGGGSD 266 >ref|NP_061549.1|Orf53 Length = 354 Score = 35.8 bits (81), Expect = 0.083 Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 3/103 (2%) Frame = +1 Query: 940 LAAERRFPVDVDAEHLHARRGRCGDRRGHAQVRLVDRQVGRRQMHAAGRAHRV--DEVRA 1113 LAAERR + DA + R ++RL + R ++ A RA + D R Sbjct: 222 LAAERRAQEERDATARREAEAKAAAERRELELRLAAEKAEREKLEAQQRAEQAERDAQRR 281 Query: 1114 AFPARAFGMQQRA-EALRTLRHAAAREHVVADLAARRVEQEAA 1239 A A A Q++A E R R AAARE A A E AA Sbjct: 282 AEEATAAERQRQADEQARIEREAAARESDKAHKKAINNEALAA 324 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,105,980 Number of Sequences: 14420 Number of extensions: 534641 Number of successful extensions: 2132 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 1731 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2128 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4517588361 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig273 (8463 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_195265.1|hypothetical protein 33 0.38 >ref|YP_195265.1|hypothetical protein Length = 295 Score = 33.5 bits (75), Expect = 0.38 Identities = 20/78 (25%), Positives = 32/78 (41%) Frame = +3 Query: 6216 PCIGTADYMNWHRLDEHFDLDDQHEEQRDLTFLCNQFIHSFIFLPAIGEAGDLTGVYIAS 6395 P + AD + WH+L DD E+ D F N F I G+ GV I+ Sbjct: 92 PFVFMADGVEWHKLTSELQFDDNLRERIDHIFSLNSPTDIFCDKVIIDNNGNTIGVSISP 151 Query: 6396 DRVRKDKLYFVDVAQIVD 6449 ++ + D+ +I + Sbjct: 152 TMLKPNSFIDTDLRRIYE 169 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,943,949 Number of Sequences: 14420 Number of extensions: 676412 Number of successful extensions: 2614 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1991 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2608 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 4127725196 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig274 (10,867 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_944229.1|NudE nudix hydrolase 49 1e-05 ref|NP_861819.1|NudE nudix hydrolase 39 0.015 ref|NP_705643.1|gp17 39 0.015 ref|NP_958122.1|gp17 39 0.015 ref|NP_944326.1|gp18 36 0.097 ref|YP_024873.1|nudix hydrolase motif containing protein 35 0.22 >ref|NP_944229.1|NudE nudix hydrolase Length = 183 Score = 48.9 bits (115), Expect = 1e-05 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Frame = -1 Query: 4402 YEGYWEFPGGKLEAGESVEDALARELHEELGIEVTASHRWHTLEHDYPHA--YVRLYFCK 4229 ++ + FPGG ++AGE++ +A ARE EE+G V H H H P + + LY C+ Sbjct: 57 WDSRFGFPGGMVDAGETLIEAAARECKEEIGYTVNPDHLLHLCTHKIPESGMHCHLYVCR 116 Query: 4228 VT 4223 V+ Sbjct: 117 VS 118 >ref|NP_861819.1|NudE nudix hydrolase Length = 152 Score = 38.5 bits (88), Expect = 0.015 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Frame = -1 Query: 4483 KVTEVAVGVMVQPDGRYLLAQRLQGKPYEGY----WEFPGGKLEAGESVEDALARELHEE 4316 KV E++ G++ + + L R+ G +G W+ P G++E GES +A RE EE Sbjct: 7 KVKELSAGIIFLTEDKELFMGRVTGSRPKGALAHRWDIPKGRVEPGESPIEAAIRECEEE 66 Query: 4315 LG 4310 G Sbjct: 67 TG 68 >ref|NP_705643.1|gp17 Length = 695 Score = 38.5 bits (88), Expect = 0.015 Identities = 21/55 (38%), Positives = 28/55 (50%) Frame = -1 Query: 4468 AVGVMVQPDGRYLLAQRLQGKPYEGYWEFPGGKLEAGESVEDALARELHEELGIE 4304 A G + DG+ LL +R G W P GK+E E+ E+A RE EE G + Sbjct: 577 AAGAVYVVDGKVLLMKRPAGD-----WGLPAGKVEGNETPEEAARRETREETGYD 626 >ref|NP_958122.1|gp17 Length = 694 Score = 38.5 bits (88), Expect = 0.015 Identities = 21/55 (38%), Positives = 28/55 (50%) Frame = -1 Query: 4468 AVGVMVQPDGRYLLAQRLQGKPYEGYWEFPGGKLEAGESVEDALARELHEELGIE 4304 A G + DG+ LL +R G W P GK+E E+ E+A RE EE G + Sbjct: 576 AAGAVYVVDGKVLLMKRPAGD-----WGLPAGKVEGNETPEEAARRETREETGYD 625 >ref|NP_944326.1|gp18 Length = 698 Score = 35.8 bits (81), Expect = 0.097 Identities = 20/53 (37%), Positives = 28/53 (52%) Frame = -1 Query: 4468 AVGVMVQPDGRYLLAQRLQGKPYEGYWEFPGGKLEAGESVEDALARELHEELG 4310 A G++ + + LL +R G W P GK+E GE+ E+A RE EE G Sbjct: 580 AAGIVFRAGDKVLLMKRPAGD-----WGLPAGKVEDGETPEEAARRETLEETG 627 >ref|YP_024873.1|nudix hydrolase motif containing protein Length = 578 Score = 34.7 bits (78), Expect = 0.22 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = -1 Query: 4399 EGYWEFPGGKLEAGESVEDALARELHEELG 4310 +G W P G +E GE+ EDA RE EE G Sbjct: 68 DGTWGLPAGSIEEGETPEDAARRETCEETG 97 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,858,734 Number of Sequences: 14420 Number of extensions: 683831 Number of successful extensions: 2897 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 2244 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2893 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 5240657615 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig275 (11,210 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 42 0.002 ref|NP_061549.1|Orf53 34 0.29 >ref|NP_046572.1|ABC transporter Length = 705 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/60 (36%), Positives = 37/60 (61%) Frame = +1 Query: 6160 LSGGMVKRVGIARAIALEPELLFLDEPTAGLDPQASDEFVELIATLHRTLGLTVVMVTHD 6339 LS G +R+ +ARAI +P++L LDE + +DP D + TLHR + ++++TH+ Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNIDP---DNTKLIYETLHR-MDCLIILITHN 674 >ref|NP_061549.1|Orf53 Length = 354 Score = 34.3 bits (77), Expect = 0.29 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 8/111 (7%) Frame = -2 Query: 5557 AEALRVRLDPEAEMARDQRDQHAEHDALAD---ADVQVRDRHDARQRAHEIVDVDAEHQ- 5390 AE R+R + A +++ ++ A A A+ A+ + ++ DA R AE + Sbjct: 191 AELERLRAEAAAREQKEREERIAREAAEAERLAAERRAQEERDATARREAEAKAAAERRE 250 Query: 5389 ----LRGERAARQRDDVGPHHEQRHRDAEREHARQDQPQPVRNAHHAHRVE 5249 L E+A R++ + EQ RDA+R + R A R+E Sbjct: 251 LELRLAAEKAEREKLEAQQRAEQAERDAQRRAEEATAAERQRQADEQARIE 301 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,975,828 Number of Sequences: 14420 Number of extensions: 633565 Number of successful extensions: 2771 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 2129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2769 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 5412115830 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig276 (12,633 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,170,271 Number of Sequences: 14420 Number of extensions: 981677 Number of successful extensions: 3607 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 2737 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3602 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 6058165663 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig277 (11,545 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_899594.1|gp12 34 0.39 >ref|NP_899594.1|gp12 Length = 473 Score = 33.9 bits (76), Expect = 0.39 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 16/118 (13%) Frame = -3 Query: 5750 ISDNGQASATGTLTFGLPNLDGKT-----VMRSTTTGDVSATFQG-------RSVTAFFD 5607 ++ N QA+ TGTL+ + + V +TT D S T +G V + Sbjct: 157 LATNAQATTTGTLSTTVAMTPQRVKEMLDVWANTTASDASETTKGLIRLANGTEVNSTLA 216 Query: 5606 TGSNA----YFFNDSTSTSQPCTRNTEFYCPSATTTYSATLSGQNGASGTVSMPVANA 5445 T N Y FN T+T+ TR FY P AT + + GT+++ AN+ Sbjct: 217 TEDNLAISPYRFNFRTATT---TRKAGFYLPDATVANARASNEHAVTVGTLNLFSANS 271 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,630,240 Number of Sequences: 14420 Number of extensions: 593105 Number of successful extensions: 2541 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1926 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2533 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 5577610281 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig278 (12,354 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818251.1|gp200 56 8e-08 ref|NP_046572.1|ABC transporter 43 9e-04 ref|NP_542287.1|unknown 37 0.038 ref|YP_024843.1|Pas57 37 0.049 >ref|NP_818251.1|gp200 Length = 113 Score = 56.2 bits (134), Expect = 8e-08 Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 1/102 (0%) Frame = +3 Query: 10320 VEINPADLRIDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAM-AM 10496 + + AD ++T R G GGQ+ N D+AVRI H P+G V + Q +RSQ +N+ A M Sbjct: 2 LSVTLADCVVETKRGHGNGGQNRNTRDTAVRIVHPPSGAVGESQEERSQLQNKKTAFRRM 61 Query: 10497 LKSRLYEVEMRKRQAEQDKLESSKTDVGWGHQIRSYVLDQSR 10622 +S +++ ++++ A D +++ W +++ V + + Sbjct: 62 AESSKFQLWLKRQVANDDLIKAQVEREMWPVNLKTEVREDGK 103 >ref|NP_046572.1|ABC transporter Length = 705 Score = 42.7 bits (99), Expect = 9e-04 Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 4/186 (2%) Frame = -2 Query: 5147 VLNNTELTVRRGEKLAVVGASGSGKSTLLHVLGGLDEPSAGEVSLLGKPFTQXXXXXXXX 4968 ++ + L + R +K+ ++G SG+GKST L L + + L G + Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 4967 XXXXXLGFVYQFHHLLPEFTALDNVAMPLRIRRMTTEDAREQAQAMLERVGLGPRAKHRP 4788 + F + E N+ M + E+A +Q L + ++ Sbjct: 558 RIVYIDENPFLFKGTIKE-----NLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKL 612 Query: 4787 GE----LSGGERQRVAIARALVTKPACVLADEPTGNLDGTTADTVFNLMXXXXXXXXXSF 4620 E LS G++QR+A+ARA++ +P ++ DE N+D ++ + Sbjct: 613 SENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETL----HRMDCLI 668 Query: 4619 VIVTHD 4602 +++TH+ Sbjct: 669 ILITHN 674 >ref|NP_542287.1|unknown Length = 224 Score = 37.4 bits (85), Expect = 0.038 Identities = 40/146 (27%), Positives = 54/146 (36%), Gaps = 3/146 (2%) Frame = +2 Query: 2768 SQPAIAPTSPTWRPEIATRWLVPVLRRTRQSSSPMPDWSPIASAATMPRCAA-SAPSTSP 2944 + P + SPT+R + W RR R S + +S +P AA S S Sbjct: 44 ASPTRSAASPTFRRWTRSAWPTSRSRRLRSKISSARGPAQRSSKRRLPSIAAWSKHSARS 103 Query: 2945 MRARSVSRTRSIDARHPDARASSNTARRGALT*PIARMPAASHAASLSRTPGLASACGRL 3124 RARS+ + T P R+P A + P L ACGR Sbjct: 104 QRARSLPS-------------------KSLATAPQHRIPLARTRDPIRLLPALMGACGRR 144 Query: 3125 R--RTTKRQRWAARKSGSASRVAAAP 3196 R+ R A R+S + S A AP Sbjct: 145 ARPRSIATSRSAMRRSSAFSMTAGAP 170 >ref|YP_024843.1|Pas57 Length = 305 Score = 37.0 bits (84), Expect = 0.049 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 5/73 (6%) Frame = -3 Query: 7687 SVTELVSPHS----VTSMLASSPFCS-AASAGANQSRSSAARPSCQRAQSCSMNGVVSAG 7523 +VT +VS S V S+ + P S +ASA A+ S S++A S + S S + SA Sbjct: 169 TVTTVVSRISFGGEVYSLTCAPPSTSTSASASASTSASASASTSASASTSASASASTSAS 228 Query: 7522 RSTSVAPSAAGSA 7484 S+S +PS GSA Sbjct: 229 ASSSASPSTTGSA 241 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,431,204 Number of Sequences: 14420 Number of extensions: 846078 Number of successful extensions: 3293 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 2523 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3287 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 5920849210 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig279 (11,280 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,903,592 Number of Sequences: 14420 Number of extensions: 680253 Number of successful extensions: 2666 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 2081 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2664 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 5446407473 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig280 (12,114 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_024827.1|Pas41 35 0.18 >ref|YP_024827.1|Pas41 Length = 165 Score = 35.0 bits (79), Expect = 0.18 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 4/92 (4%) Frame = -1 Query: 1209 ARILEELAAAQGKPQAIGGYYRPNVELTSQAMRPSATLNGIVDALA*RRP----RQRASP 1042 ARI+E+ A G+ +A G Y V TS +A + + LA P R RA Sbjct: 48 ARIIEKGFRAAGRYEARGKY----VIHTSAGSFDAAPIQTMW--LAPEDPAGIKRARAEA 101 Query: 1041 CMCRRGGLNRSPPGTQEKRPGRPGRLSLQACH 946 + RG R G +++RPGRPGR + H Sbjct: 102 DLVERGPRRRDRAGRRQRRPGRPGRRGRRGLH 133 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,315,051 Number of Sequences: 14420 Number of extensions: 873543 Number of successful extensions: 3143 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 2425 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3129 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 5802727530 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig281 (11,775 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945089.1|gp58 43 7e-04 ref|NP_944302.1|conserved phage protein 35 0.18 >ref|NP_945089.1|gp58 Length = 297 Score = 43.1 bits (100), Expect = 7e-04 Identities = 23/59 (38%), Positives = 31/59 (52%) Frame = +3 Query: 1710 FVQVVESGSFALAAERLDMTRSAVGKAIARLEKRLGARLLQRTTRSQSLTDDGQAYYDR 1886 F G+F AAE L++ + AV K + +LE LG L R ++ LT GQ Y DR Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADR 73 >ref|NP_944302.1|conserved phage protein Length = 532 Score = 35.0 bits (79), Expect = 0.18 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Frame = +1 Query: 5140 TGASTNAPPCSRTSAPNACALAGSIVLESITVAPAPRPASTPFSPDSTERTC--GAAGSI 5313 T +T AP +T A+ G+++ +S ++APAP PA + + ++ G GSI Sbjct: 116 TTTTTPAPSSPQTPQIPPDAMKGTLMADSGSMAPAPTPADAVSAARAVDKPAQSGTTGSI 175 Query: 5314 VITNVAPDAASRG 5352 T V AA+RG Sbjct: 176 AATPVV-QAATRG 187 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,456,208 Number of Sequences: 14420 Number of extensions: 750461 Number of successful extensions: 3161 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 2397 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3156 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 5635880657 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig282 (8905 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,973,534 Number of Sequences: 14420 Number of extensions: 874930 Number of successful extensions: 3066 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 2412 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3065 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4308343182 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig283 (12,753 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164321.1|hypothetical protein 34 0.33 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 34.3 bits (77), Expect = 0.33 Identities = 38/113 (33%), Positives = 45/113 (39%), Gaps = 12/113 (10%) Frame = -2 Query: 752 AGALHQRGAGRPEPRLLPEREGRPVG---------RRLQ---GCDALSRRRFRHADRELR 609 AG HQ G G + L +R G P G R +Q G + RR + AD Sbjct: 350 AGLPHQAGCGYLQADCLQDRRGGPGGAGADQPAARRGVQGQAGRRTVERRGLQGADAGGI 409 Query: 608 RVGDDHDHRVPGVQRRERPPLHDDRAAEHDVADLRHRRPVRQGPAVGQGARAQ 450 R D V + RR DR E V R R RQG VGQG RA+ Sbjct: 410 RARRDDQEPVRRLPRRRAGVCRADRRREGQV---RRLRGPRQG-RVGQGGRAR 458 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,691,176 Number of Sequences: 14420 Number of extensions: 884882 Number of successful extensions: 3351 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 2479 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3346 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 6117226503 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig284 (16,350 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818453.1|gp153 37 0.064 >ref|NP_818453.1|gp153 Length = 435 Score = 37.0 bits (84), Expect = 0.064 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 13/117 (11%) Frame = -3 Query: 12181 PLDDRGPVTGAAWVSTQQDPPNPLARKMIDTPFPTGVRVIDGLMTLGIGQRVGIFAPSGV 12002 P D P+ A W+ +PP P+ D G+ + + AP G+ Sbjct: 104 PFGDFPPIDAATWMFDSGEPPKPIWGT-------------DSECLWASGESLMLAAPPGL 150 Query: 12001 GKSTLLGMIARG-------------AQADVNVIALVGERGREVREFIEHSLSPEVRA 11870 GKSTL G + R A +D ++ L +R R+++ + S + R+ Sbjct: 151 GKSTLAGRLVRAQLGLQDSVLGLPVAPSDKPILYLAADRPRQLQRSMLRQFSEDERS 207 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,210,287 Number of Sequences: 14420 Number of extensions: 878203 Number of successful extensions: 3823 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 2730 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3818 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 7730616540 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig285 (15,523 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164321.1|hypothetical protein 35 0.23 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 35.0 bits (79), Expect = 0.23 Identities = 78/295 (26%), Positives = 103/295 (34%), Gaps = 63/295 (21%) Frame = +2 Query: 1970 VGFREP--RDFSDPLGRVIGEKRGHRVPAFGVRGDERGVGAA-VRMQQVQQPVGQREIGA 2140 +G REP R + P R + + A VRG G R+Q+ QPV + E G Sbjct: 286 LGNREPALRRAAGPGPRAVDREHAPEHGAAPVRGRPLPRGKPDQRVQRADQPVQRAERGL 345 Query: 2141 RP---DLQEQVGLV-----------GGTGAARIDDDQLRAGLHAVHHPQEQDR-----VT 2263 R L Q G GG G A D R G+ + +R Sbjct: 346 RDAGAGLPHQAGCGYLQADCLQDRRGGPGGAGADQPAARRGVQGQAGRRTVERRGLQGAD 405 Query: 2264 VGHVRA--DHEEQVRAI--------------EVLVRPGRPVRAERLLVAGARARHAQPRV 2395 G +RA D +E VR + E VR R R R+ G RAR A PR+ Sbjct: 406 AGGIRARRDDQEPVRRLPRRRAGVCRADRRREGQVRRLRGPRQGRV-GQGGRARCAGPRL 464 Query: 2396 RLDVVGADEPLR------------------ELVDEILRLDRHLPRHVERQRIGPVRIEHR 2521 R D G E R E++ RL H ER + V + Sbjct: 465 RFDHSGVGEQGRCQGQGRADQDGGGAHQGVEVLGGRGRLQGHPAGQPERGAVQHVGVPGP 524 Query: 2522 AQPPRGLGDRVARRQRHEVVLARAAHE-------RAVEPPRAAQRDVRRRTLRAE 2665 + G R R+R+ + L R HE R R + D RRT A+ Sbjct: 525 GRSLARSGQRQRGRRRNAISLCR--HEQPDQHRLRRNADQRVHREDAERRTAGAD 577 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,517,667 Number of Sequences: 14420 Number of extensions: 1002962 Number of successful extensions: 4139 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 2923 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4134 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 7405541565 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig286 (13,357 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_064745.1|gp7 38 0.031 ref|NP_795700.1|putative hyaluronidase 37 0.041 ref|NP_795417.1|hyaluronidase 37 0.041 ref|NP_835477.1|putative adsorption protein 35 0.26 ref|NP_795533.1|hyaluronoglucosaminidase 34 0.34 ref|NP_817352.1|gp14 34 0.34 ref|YP_024939.1|gp19 34 0.34 ref|NP_958267.1|hypothetical protein 34 0.34 >ref|NP_064745.1|gp7 Length = 540 Score = 37.7 bits (86), Expect = 0.031 Identities = 34/137 (24%), Positives = 57/137 (41%) Frame = +3 Query: 1104 AGAWPSISGASATRSSCGAPPRRLSSTARRISSTALSTSNGFARYSNAPPWNAATALSRS 1283 AGA + + ASAT S+ A S++ S++A + S G A S N+AT+ S S Sbjct: 122 AGASETAASASATASATSATNSATSASQAATSASAAAVSEGNAATSETNAANSATSASGS 181 Query: 1284 ENAVMMMTGRPGSRSCIACSNSRPEPPGIRMSDTSTCGVSWSSAASASRTFAKLFVAKLS 1463 + S + ++ +N+ S T+ ++A S + A S Sbjct: 182 ASTATTQ----ASAASVSATNAATSASNAATSATNAAASQAAAATSETNAAASESTVTTS 237 Query: 1464 RASAFSSTQRIDWSSST 1514 +A +S S+ST Sbjct: 238 ATNAATSEANAATSAST 254 >ref|NP_795700.1|putative hyaluronidase Length = 335 Score = 37.4 bits (85), Expect = 0.041 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 4/142 (2%) Frame = -1 Query: 4396 RIRSNRGALRQSKTPISSINEAVSQSAGIVQSGEEVMSKTVADVMQLVKDEDVKFVDFRF 4217 R++ N G + S T +IN +S+S G T +M L ++D +F Sbjct: 112 RLKPNSGIEKSSSTG-GAINIDMSKSKGAAMVMYTNKDTTDGPLMILRSNKDTFDQSVQF 170 Query: 4216 TDTRGKEQHVSVPVSAFDEDKFESG----HAFDGSSIAGWKGIEASDMLLMPDPTAAFVD 4049 D RGK V++ + F S A +G S +G+E + L VD Sbjct: 171 VDYRGKTNAVNIVMRQPPTPNFSSALNITSANEGGSAMQIRGVEKALGTLKITHENPSVD 230 Query: 4048 PFYEESTLVLTCDVVEPADGKG 3983 Y+++ L+ D+V+ G G Sbjct: 231 KEYDKNAAALSIDIVKKKKGGG 252 >ref|NP_795417.1|hyaluronidase Length = 335 Score = 37.4 bits (85), Expect = 0.041 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 4/142 (2%) Frame = -1 Query: 4396 RIRSNRGALRQSKTPISSINEAVSQSAGIVQSGEEVMSKTVADVMQLVKDEDVKFVDFRF 4217 R++ N G + S T +IN +S+S G T +M L ++D +F Sbjct: 112 RLKPNSGIEKSSSTG-GAINIDMSKSKGAAMVMYTNKDTTDGPLMILRSNKDTFDQSVQF 170 Query: 4216 TDTRGKEQHVSVPVSAFDEDKFESG----HAFDGSSIAGWKGIEASDMLLMPDPTAAFVD 4049 D RGK V++ + F S A +G S +G+E + L VD Sbjct: 171 VDYRGKTNAVNIVMRQPPTPNFSSALNITSANEGGSAMQIRGVEKALGTLKITHENPSVD 230 Query: 4048 PFYEESTLVLTCDVVEPADGKG 3983 Y+++ L+ D+V+ G G Sbjct: 231 KEYDKNAAALSIDIVKKKKGGG 252 >ref|NP_835477.1|putative adsorption protein Length = 493 Score = 34.7 bits (78), Expect = 0.26 Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 1/96 (1%) Frame = -3 Query: 3275 GTQPFGIDPHSARVEPEGPPYRNALPGPDGEPVPVVLGADDGRPRRDPEQDPSGRGSGQE 3096 G PF D + + PE P N P P+ EP P DPE +PS + Sbjct: 186 GDYPFCTDENCSSFLPEPNPNPNPEPEPEPEPQP------------DPEHNPS------D 227 Query: 3095 PVRPAAGRGCKDPDRLRRPRPGT-GSARQGSRVPDP 2991 P P G G + + P+P T + + PDP Sbjct: 228 PTAPLPGSGGEVINPTVPPKPPTEETPKPDVETPDP 263 >ref|NP_795533.1|hyaluronoglucosaminidase Length = 369 Score = 34.3 bits (77), Expect = 0.34 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 4/142 (2%) Frame = -1 Query: 4396 RIRSNRGALRQSKTPISSINEAVSQSAGIVQSGEEVMSKTVADVMQLVKDEDVKFVDFRF 4217 + + N G ++ S + +IN +S+S G T +M L D+D +F Sbjct: 149 QFKPNSG-IKPSSSVGGAINIDMSKSEGAAMVMYTNKDTTDGPLMILRSDKDTFDQSAQF 207 Query: 4216 TDTRGKEQHVSVPVSAFDEDKFESG----HAFDGSSIAGWKGIEASDMLLMPDPTAAFVD 4049 D GK V++ + F S A +G S +G+E + L V Sbjct: 208 VDYSGKTNAVNIVMRQPSAPNFSSALNITSANEGGSAMQIRGVEKALGTLKITHENPNVK 267 Query: 4048 PFYEESTLVLTCDVVEPADGKG 3983 Y+E+ L+ D+V+ +G+G Sbjct: 268 ANYDENAAALSIDIVKKTNGEG 289 >ref|NP_817352.1|gp14 Length = 1188 Score = 34.3 bits (77), Expect = 0.34 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Frame = -3 Query: 3263 FGIDPHSAR-VEPEGPPYRNALPGPDGEPVPVVLGADDGRPRRDPEQDPSGRGSGQEPVR 3087 FG DP + + P GPP + P DG +P LG G + + GR S Sbjct: 512 FGSDPDTGLPIGPAGPPAPSMSPAVDGILLPGGLGGGPG-----AQAERRGRSSS----- 561 Query: 3086 PAAGRGCKDPDRLRRPRPGTGSARQGSRVPD 2994 A+G DP P PG + G ++PD Sbjct: 562 AASGSPAGDP---ILPPPGASGSSSGPKLPD 589 >ref|YP_024939.1|gp19 Length = 357 Score = 34.3 bits (77), Expect = 0.34 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 11/107 (10%) Frame = +3 Query: 1140 TRSSCGAPPRRLSSTARRISSTALSTSN-----GFARYSNAPPWNAATALSRSENAVMMM 1304 T + APP ++T +S+T LS S+ GF+ Y +PP AT + + + Sbjct: 149 TNAIFAAPPAFGNTTPAAVSATTLSASSTVSGSGFSTYLASPPAIGATTPAAGKFTTLQA 208 Query: 1305 TG--RPGSRSCIACS----NSRPEPPGIRMSDTSTCGVSWSSAASAS 1427 TG P S + I + N+ G + T+ GVS +S A+A+ Sbjct: 209 TGAITPSSTAGIVGTTTNDNASAGSVGEYPTPTNLTGVSLTSGAAAN 255 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 34.3 bits (77), Expect = 0.34 Identities = 48/178 (26%), Positives = 55/178 (30%), Gaps = 26/178 (14%) Frame = -2 Query: 11415 RSRGHLRADSSGPVDGPARQPRDEG---------------RRRSALPWRAWHQVLPVAGL 11281 R+R RA P GPA P G R R+ R H L Sbjct: 77 RTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRPRAPECDRGAHH-LRTRAP 135 Query: 11280 RAREEGRPLGDGGRARRDEPAVRALPCEDRARVGREGRRAPAEEIVVGAALGEAPGAGQR 11101 R R PLG G R R P EDR R R R P + +G G R Sbjct: 136 RTRTRAVPLGPGARVRT--------PVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGAR 187 Query: 11100 IXXXXXXXXXXXXXXXXXXRQAGPGA-----------RPRAVHPRCAGRRRIRHEAAV 10960 + GPGA PRAV PR RR R A++ Sbjct: 188 ----------RVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRRHRRRASL 235 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,586,960 Number of Sequences: 14420 Number of extensions: 881461 Number of successful extensions: 3585 Number of sequences better than 0.5: 8 Number of HSP's better than 0.5 without gapping: 2643 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3571 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 6414007224 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig287 (12,957 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_599056.1|bactoprenol glucosyltransferase 313 2e-85 ref|NP_059582.1|O-antigen conversion protein 304 2e-82 ref|NP_720276.1|GtrB 303 3e-82 ref|YP_006358.1|GtrB 303 4e-82 ref|NP_046572.1|ABC transporter 49 1e-05 ref|NP_061549.1|Orf53 37 0.067 ref|NP_958267.1|hypothetical protein 36 0.11 >ref|NP_599056.1|bactoprenol glucosyltransferase Length = 307 Score = 313 bits (803), Expect = 2e-85 Identities = 157/301 (52%), Positives = 211/301 (70%) Frame = +3 Query: 1239 VSLVVPFHDEAEAIDAFFATTVPILEAIGTARFEIVCVNDGSRDGTLDKLIDIAVADPRV 1418 +SLVVP +E EAI F+ T V + + EIV +NDGS+D T + +AV+DP V Sbjct: 3 ISLVVPVFNEEEAIPVFYKT-VREFQELKPYEVEIVFINDGSKDATESIINALAVSDPLV 61 Query: 1419 RIVDLTRRFGKEAALTAGIDEAAGAAVILIDADLQDPPALIPAMLERWHAGAEVVAAKRT 1598 + TR FGKE AL AG+D A+G AVI ID DLQDP +IP ++E+W AGA++V AKR+ Sbjct: 62 VPLSFTRNFGKEPALFAGLDHASGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRS 121 Query: 1599 DRRCDPLMQRVAAALYYRVHNQLSEVEMPENVGDFRLMDRQVVDALRALPERRRFMKGLF 1778 DR D ++R A +Y++HN++S ++ ENVGDFRLM R+VV+ ++ LPER FMKG+ Sbjct: 122 DRSTDGRLKRKTAEWFYKLHNKISTPKIEENVGDFRLMSREVVENIKLLPERNLFMKGIL 181 Query: 1779 AWVGYRTEIIEYTRAARSGGRSKFSGWRRWNFALEGITSFSTVPLRVWTYIGLAFAVLSF 1958 +WVG +T+++EY RA R G SKF+GW+ WN ALEGITSFST PLRVWTYIGL A +SF Sbjct: 182 SWVGGQTDVVEYVRAERVAGISKFNGWKLWNLALEGITSFSTFPLRVWTYIGLFVASISF 241 Query: 1959 VYGAYIVMRTLLFGNPVHGYASLISVMLFXXXXXXXXXXXXXEYLGRIYHESKQRPVYLV 2138 +YGA++++ TL+FGNPV GY SL+ +LF EY+GRIY ESK RP Y++ Sbjct: 242 LYGAWMIIDTLVFGNPVRGYPSLLVSILFLGGVQLIGIGVLGEYIGRIYIESKHRPKYII 301 Query: 2139 R 2141 + Sbjct: 302 K 302 >ref|NP_059582.1|O-antigen conversion protein Length = 310 Score = 304 bits (778), Expect = 2e-82 Identities = 152/303 (50%), Positives = 207/303 (68%) Frame = +3 Query: 1239 VSLVVPFHDEAEAIDAFFATTVPILEAIGTARFEIVCVNDGSRDGTLDKLIDIAVADPRV 1418 +SLVVP +E + I F+ T E + EIV +NDGS+D T + IA +DP V Sbjct: 3 ISLVVPVFNEEDTIPIFYKTVREFNE-LKEYEIEIVFINDGSKDATESIINKIAASDPLV 61 Query: 1419 RIVDLTRRFGKEAALTAGIDEAAGAAVILIDADLQDPPALIPAMLERWHAGAEVVAAKRT 1598 + TR FGKE AL AG+D A G AVI ID DLQDP +IP ++E+W AGA++V AKR+ Sbjct: 62 IPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRS 121 Query: 1599 DRRCDPLMQRVAAALYYRVHNQLSEVEMPENVGDFRLMDRQVVDALRALPERRRFMKGLF 1778 DR D M+R A +Y++HN++S ++ ENVGDFRLM R VV+ ++ +PER FMKG+ Sbjct: 122 DRSTDGRMKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFMKGVL 181 Query: 1779 AWVGYRTEIIEYTRAARSGGRSKFSGWRRWNFALEGITSFSTVPLRVWTYIGLAFAVLSF 1958 +WVG +T++++Y RA R G SKF+GW+ WN ALEGITSFST PLR+WTYIGL A +SF Sbjct: 182 SWVGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMSF 241 Query: 1959 VYGAYIVMRTLLFGNPVHGYASLISVMLFXXXXXXXXXXXXXEYLGRIYHESKQRPVYLV 2138 +YGA++++ L+FGN V GY SL+ +LF EY+GRIY E+KQRP Y++ Sbjct: 242 LYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKQRPKYIL 301 Query: 2139 RRR 2147 +R+ Sbjct: 302 KRK 304 >ref|NP_720276.1|GtrB Length = 325 Score = 303 bits (776), Expect = 3e-82 Identities = 152/306 (49%), Positives = 208/306 (67%) Frame = +3 Query: 1230 KPLVSLVVPFHDEAEAIDAFFATTVPILEAIGTARFEIVCVNDGSRDGTLDKLIDIAVAD 1409 K +SLVVP +E + I F+ T E + EIV +NDGS+D T + IA +D Sbjct: 15 KMKISLVVPVFNEEDTIPIFYKTVREFNE-LKEYEIEIVFINDGSKDATESIINKIAASD 73 Query: 1410 PRVRIVDLTRRFGKEAALTAGIDEAAGAAVILIDADLQDPPALIPAMLERWHAGAEVVAA 1589 P V + TR FGKE AL AG+D A G AVI ID DLQDP +IP ++E+W AGA++V A Sbjct: 74 PLVIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLA 133 Query: 1590 KRTDRRCDPLMQRVAAALYYRVHNQLSEVEMPENVGDFRLMDRQVVDALRALPERRRFMK 1769 KR+DR D ++R A +Y++HN++S ++ ENVGDFRLM R VV+ ++ +PER FMK Sbjct: 134 KRSDRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFMK 193 Query: 1770 GLFAWVGYRTEIIEYTRAARSGGRSKFSGWRRWNFALEGITSFSTVPLRVWTYIGLAFAV 1949 G+ +WVG +T++++Y RA R G SKF+GW+ WN ALEGITSFST PLR+WTYIGL A Sbjct: 194 GVLSWVGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAG 253 Query: 1950 LSFVYGAYIVMRTLLFGNPVHGYASLISVMLFXXXXXXXXXXXXXEYLGRIYHESKQRPV 2129 +SF+YGA++++ L+FGN V GY SL+ +LF EY+GRIY E+KQRP Sbjct: 254 MSFLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKQRPK 313 Query: 2130 YLVRRR 2147 Y+++R+ Sbjct: 314 YILKRK 319 >ref|YP_006358.1|GtrB Length = 310 Score = 303 bits (775), Expect = 4e-82 Identities = 151/303 (49%), Positives = 207/303 (68%) Frame = +3 Query: 1239 VSLVVPFHDEAEAIDAFFATTVPILEAIGTARFEIVCVNDGSRDGTLDKLIDIAVADPRV 1418 +SLVVP +E + I F+ T E + EIV +NDGS+D T + IA +DP V Sbjct: 3 ISLVVPVFNEEDTIPIFYKTVREFNE-LKEYEIEIVFINDGSKDATESIINKIAASDPLV 61 Query: 1419 RIVDLTRRFGKEAALTAGIDEAAGAAVILIDADLQDPPALIPAMLERWHAGAEVVAAKRT 1598 + TR FGKE AL AG+D A G AVI ID DLQDP +IP ++E+W AGA++V AKR+ Sbjct: 62 IPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRS 121 Query: 1599 DRRCDPLMQRVAAALYYRVHNQLSEVEMPENVGDFRLMDRQVVDALRALPERRRFMKGLF 1778 DR D ++R A +Y++HN++S ++ ENVGDFRLM R VV+ ++ +PER FMKG+ Sbjct: 122 DRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFMKGVL 181 Query: 1779 AWVGYRTEIIEYTRAARSGGRSKFSGWRRWNFALEGITSFSTVPLRVWTYIGLAFAVLSF 1958 +WVG +T++++Y RA R G SKF+GW+ WN ALEGITSFST PLR+WTYIGL A +SF Sbjct: 182 SWVGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMSF 241 Query: 1959 VYGAYIVMRTLLFGNPVHGYASLISVMLFXXXXXXXXXXXXXEYLGRIYHESKQRPVYLV 2138 +YGA++++ L+FGN V GY SL+ +LF EY+GRIY E+KQRP Y++ Sbjct: 242 LYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKQRPKYIL 301 Query: 2139 RRR 2147 +R+ Sbjct: 302 KRK 304 >ref|NP_046572.1|ABC transporter Length = 705 Score = 49.3 bits (116), Expect = 1e-05 Identities = 45/182 (24%), Positives = 87/182 (47%), Gaps = 9/182 (4%) Frame = +1 Query: 6568 VLDDVSLHVRAGEFVTIVGASGCGKSTLLRLVAGLDTDYTGEIHAGG---ERVRDTSLQR 6738 +++D++L + + V I+G SG GKST + ++ L I+ G R S+++ Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 6739 GIVFQDHRLFPWL-TVEQNIGXXXXXXXXXXXXKRRAIAEHVALVGLNGFEHAFP----- 6900 IV+ D F + T+++N+ H + L+ ++++ Sbjct: 558 RIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDK-QYSYKLSENG 616 Query: 6901 NQLSGGMAQRVAIARGLVNRPRVLLLDEPFGALDAQTRAKMQNELLRIWEQERITMILVT 7080 + LS G QR+A+AR ++++P+VL+LDE +D + L R+ +IL+T Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM----DCLIILIT 672 Query: 7081 HD 7086 H+ Sbjct: 673 HN 674 >ref|NP_061549.1|Orf53 Length = 354 Score = 36.6 bits (83), Expect = 0.067 Identities = 56/211 (26%), Positives = 87/211 (41%), Gaps = 18/211 (8%) Frame = -2 Query: 6311 DQRVADPAAGDEQV-FRAERREPRIDQAEIQA----------GEDRRQ------RGRQDH 6183 + R A AG +Q+ R E R+ +D E++A GED + R + Sbjct: 115 EMRKAKHQAGIDQIKMRLECRD--LDSTELKANIEWLEGLLIGEDWEEFETEAARTKGKA 172 Query: 6182 VADQLKP*VAQRAGDVDVRARHRVNAVAGMGGDRQQRGERQEHDLRDVAEPEPHGNQRNP 6003 +A + VA+ + + R+ A A R+Q+ ER+E R+ AE E +R Sbjct: 173 LAALREALVAREKYEAEQAELERLRAEAAA---REQK-EREERIAREAAEAERLAAERRA 228 Query: 6002 REQRDLLERVEARADHPRGDARQPEHGAEQQPARRADREPARFARERCRQGTAERAARGL 5823 +E+RD R EA A + R+ E + A +A+RE A++R Q + R Sbjct: 229 QEERDATARREAEA-KAAAERRELE---LRLAAEKAEREKLE-AQQRAEQAERDAQRRAE 283 Query: 5822 RPRGVQHVGGADEQPAF-HEVRGSEGPPARK 5733 + ADEQ E E A K Sbjct: 284 EATAAERQRQADEQARIEREAAARESDKAHK 314 Score = 36.2 bits (82), Expect = 0.088 Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 7/80 (8%) Frame = -1 Query: 5196 ERLADTDEQQQERQPAEHRNLH-----ERIEARQHIGFQRARQPERDADRHTEQRASREA 5032 ER A + + + AE R L E+ E + QRA Q ERDA R E+ A Sbjct: 231 ERDATARREAEAKAAAERRELELRLAAEKAEREKLEAQQRAEQAERDAQRRAEEAT---A 287 Query: 5031 DEHPLQADQ--RVTRQIAAR 4978 E QAD+ R+ R+ AAR Sbjct: 288 AERQRQADEQARIEREAAAR 307 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 35.8 bits (81), Expect = 0.11 Identities = 57/224 (25%), Positives = 72/224 (32%), Gaps = 9/224 (4%) Frame = -2 Query: 6446 ARQVAAPGQHLALDRPRGRVQCPARHADDDDPEQHEIHPELLAAVDQRVADPAAGDEQVF 6267 +R A P +H + R R R + P A D P H P A PAA + Sbjct: 63 SRPAAGPRRHPPVARTRPRTRAP-ECAPDPGPAVHPAAPGCAPAA------PAAPEY--- 112 Query: 6266 RAERREPRIDQAEIQAGEDRRQRGRQDHVADQLKP*VAQRAGDVDVRA---------RHR 6114 A PR + + A R + R A L P R D R R R Sbjct: 113 -APALRPRAPECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPRRR 171 Query: 6113 VNAVAGMGGDRQQRGERQEHDLRDVAEPEPHGNQRNPREQRDLLERVEARADHPRGDARQ 5934 V G+G R++ R +R A P P Sbjct: 172 VQPRLGVGVHRRRGARRVGRRVRVRARPGP------------------------------ 201 Query: 5933 PEHGAEQQPARRADREPARFARERCRQGTAERAARGLRPRGVQH 5802 GA ++P RR E R R R R G R LRPR +H Sbjct: 202 ---GAARRPRRRPHPEHPRAVRPRRRTGRRHRRRASLRPRHRRH 242 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,910,551 Number of Sequences: 14420 Number of extensions: 884770 Number of successful extensions: 3507 Number of sequences better than 0.5: 7 Number of HSP's better than 0.5 without gapping: 2524 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3495 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 6217629931 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig288 (14,543 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818506.1|gp206 122 1e-27 ref|NP_945089.1|gp58 77 4e-14 ref|NP_817938.1|gp87 74 6e-13 ref|NP_046669.1|similar to part of DNA ligases 64 4e-10 >ref|NP_818506.1|gp206 Length = 282 Score = 122 bits (305), Expect = 1e-27 Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 2/235 (0%) Frame = -1 Query: 4328 RMIWKGAISFGLVHVPVQLFPATRTVKPSFRMLDKRSMDPIGYRQINKRTGKEVTREDIV 4149 R +W GA++FGLV+VPV+++ AT + + I Y ++ + G++V D+ Sbjct: 2 RAVWTGAVNFGLVNVPVKMYAATEEHDLKGHLAHVQDGGRIRYHKVCETCGEQVHTADLG 61 Query: 4148 RGYEYEKERYVVLTDDEIRAANPESTQTVDILTFVDEDAVSFLYLDTPYYLVPDRKGEKV 3969 + +E + + +LTD+++ E+ + +D++ FV V + LD PYYL + + Sbjct: 62 KVFEVDGQT-ALLTDEDLAELPSENNKVIDVVEFVPAGEVDPILLDKPYYLNAEGS-VRP 119 Query: 3968 YALLRDALKDSGKIGIALVVMRDRQHLGALIPVGP--MLALDTLRWQEELRPLDELSVPA 3795 YALL L D+ K+ I V +R ++HL L G +L L TLRW +E+R D P Sbjct: 120 YALLARTLSDADKVAIVRVTLRSKEHLAVLRVTGKNEVLTLQTLRWPDEVREPD---FPK 176 Query: 3794 DDAKGAGVTARELGMAKKLIDDMSGKWTPDEYHDTFRDDILELVERKVRAGKIEE 3630 D K ++ EL +A L+D++S + PD++ DT++ ++ LVE K+ ++ E Sbjct: 177 LDNKPE-LSEAELKVAAMLVDELSAPFNPDKHQDTYKVELRALVESKLEPVEVPE 230 >ref|NP_945089.1|gp58 Length = 297 Score = 77.4 bits (189), Expect = 4e-14 Identities = 78/287 (27%), Positives = 124/287 (43%), Gaps = 7/287 (2%) Frame = -3 Query: 13413 LLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLEARLGVRLLARTTRSVSTTEAGEALF 13234 L+ F A AR +FTRAA L V+Q A+S+ V LE LG L R +++ T AG+ Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ--- 68 Query: 13233 NAVAPRIDEISAQL--AALSDFRDKPAGVVRITATEHPIDTVIWPKLRAVLPDYPDIRVE 13060 A R+ I A A +++ + I + ++ ++P++ V Sbjct: 69 -QYADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVR 127 Query: 13059 LSVDYGLSNIVEERYDIGVRYGDQVAQDMIAVRISPDIRMAMVAAPSYLDGRKPPKKPQD 12880 + V G+ N+ +DIGV Y V IA + AP++L GR+ P PQD Sbjct: 128 ILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVP--PQD 185 Query: 12879 LLDHDCVTLRLATAK-----GIYAWELKKGKNAIQARVNGRITCNTQPHLLQAALDGFGI 12715 L++ TL +A + G W + I R I+ N+ P LLQ AL G G Sbjct: 186 LME---ATLLVAEEQQRQWMGWRDW-FRLTVGEIGFRPARTISANSYPVLLQLALHGHGA 241 Query: 12714 AFVTEDIAHAHLRSGALRIVMPDWCPVFPGYHAYYPSRRQASRAFSV 12574 + + + SG L + Y +P+ R+ + A ++ Sbjct: 242 ILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTM 288 >ref|NP_817938.1|gp87 Length = 284 Score = 73.6 bits (179), Expect = 6e-13 Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 16/269 (5%) Frame = -1 Query: 4307 ISFGLVHVPVQLFPATRTVKPSFRMLDKRSMDPIGYRQINKRT---GKEVTREDIVRGYE 4137 ++ GLV VPV++ + + M G ++ K G+ V DI +G+E Sbjct: 9 LTIGLVTVPVKMVGVSESHDRKASMYHPHEDGNFGKIKMPKLCEDCGEVVPTADIAKGFE 68 Query: 4136 YEKERYVVLTDDEIRAANPESTQTVDILTFVDEDAVSFLYL--DTPYYLVPD----RKGE 3975 E V+LT DE+ + + +++ FV + ++ + + Y LVPD R+ Sbjct: 69 -EGGDIVILTADELASIAAATGAALEVPQFVKAEQINPMLFANENIYRLVPDPKRGRQAA 127 Query: 3974 KVYALLRDALKDSGKIGIALVVMRDRQHLGAL----IPVGPMLALDTLRWQEELRPLDEL 3807 Y ++R L +G+ R LG L G +L + + W +ELR + + Sbjct: 128 TTYLMVRHILVSQELVGVVQYTRWGRNRLGVLDVEPSDDGGVLVIRNMMWADELRSTEGI 187 Query: 3806 ---SVPADDAKGAGVTARELGMAKKLIDDMSGKWTPDEYHDTFRDDILELVERKVRAGKI 3636 +V DD + R L + +++ M+G W P Y D + + + E + K + Sbjct: 188 VPTNVTEDD-----IDPRLLPVMASVVESMTGDWDPTAYTDRYTEQLSEAITAKAQG--- 239 Query: 3635 EEIEDRPAQTGRAASNVVDLTELLKRSLK 3549 +EI +++G+A +V DL L+ S++ Sbjct: 240 DEIATVASESGKAIDDVSDLLAKLEASIQ 268 >ref|NP_046669.1|similar to part of DNA ligases Length = 270 Score = 63.9 bits (154), Expect = 4e-10 Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 11/221 (4%) Frame = -1 Query: 2447 VAPQLATLVDAPPTQGGWCYELKFDGYRILARIAGKGARRRVTLMTREGRDWTAKXXXXX 2268 V+P L + P + ELKFDG R++ ++ L TR + T+K Sbjct: 3 VSPMLLHSIKEPFNDENYITELKFDGIRLIL----SKFDNQIKLYTRHNNEVTSKFPELM 58 Query: 2267 XXXXXXXXXXXXXDGEAVVLGENGLPDFQALQNAFGTDRS-DAITFFVFDLPYLDGYDLR 2091 GE +V G PDF+A+ F + +S I + VFD+ Y DG + Sbjct: 59 DLDIPDGTVLD---GEVIVAASGGAPDFEAVMERFMSKKSAHNIVYCVFDVIYKDGQSIA 115 Query: 2090 DASLNDRRALLEPLLANSDPARVRFSPDLGEDVASLIASACDTGLEGLIGKRADSRYRAG 1911 L +R+ +L L D V + + A + LEG++ K+A+S Y Sbjct: 116 AKPLTERKTVLNSL--ELDHPNVFVIEGTQGNGLAYFNLAKEKNLEGIVIKKANSPYEIN 173 Query: 1910 -RSPAWIKLKCRRRQEFVIGGFTE---------PSGSRHGF 1818 RS W+K+ E +I G+T+ P G+ GF Sbjct: 174 KRSHNWLKVINYDYTEVLITGYTKKDIKFLLSYPDGTSAGF 214 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,149,439 Number of Sequences: 14420 Number of extensions: 915774 Number of successful extensions: 3683 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 2675 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3675 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 6928896639 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig289 (17,496 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_861694.1|gp60plus39 large subunit topoisomerase II 127 3e-29 ref|NP_891577.1|topoisomerase II large subunit 127 4e-29 ref|NP_899293.1|topoisomerase II large subunit 126 9e-29 ref|NP_943883.1|topoisomerase II large subunit 119 1e-26 ref|NP_049621.1|gp39 topoisomerase II, large subunit, N-terminal... 113 6e-25 ref|NP_932362.1|topoisomerase II large subunit 109 1e-23 ref|NP_046564.1|unknown 61 3e-09 ref|NP_705641.1|gp15 55 2e-07 ref|NP_958120.1|gp15 55 2e-07 ref|NP_043468.1|hypothetical protein 45 2e-04 ref|YP_024951.1|putative DNA polymerase III protein 42 0.003 ref|NP_597898.1|regulatory protein cI 40 0.006 ref|NP_612999.1|CI protein 37 0.090 ref|NP_049485.1|repressor protein CI 37 0.090 >ref|NP_861694.1|gp60plus39 large subunit topoisomerase II Length = 606 Score = 127 bits (320), Expect = 3e-29 Identities = 151/580 (26%), Positives = 258/580 (44%), Gaps = 13/580 (2%) Frame = +3 Query: 13584 GLHHLVFEVLDNSIDEALAG---YCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPK 13754 GL L+ E++DNS+DEA+ + N I V I +N +SV DNGRGIP + + D+ + Sbjct: 48 GLVKLIDEIIDNSVDEAIRTSFKFANKIDVQIK-NNQVSVEDNGRGIPQGL-VTDQTGEQ 105 Query: 13755 RSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHR 13934 T AGG F +S + +GG++GVG S N S+ L + DG+ Sbjct: 106 IPGPVAAWTIPKAGGNFGDDSERKTGGMNGVGSSLTNIFST-LFTGITSDGENEI----- 159 Query: 13935 GVAQDRVLEVVDGVEVSPMLVTGDTENRGTEVHFMADPTIF---GTVEYHYDILAKRMRE 14105 + +G+E + + ++ +GT+V F D T F + + DI R++ Sbjct: 160 ------TVNCSNGME-NKSWSSKKSKGKGTKVIFTPDFTSFEEHNLSQIYLDITLDRLQT 212 Query: 14106 LSFLNNGVRIRLTDLRSGKEDDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVE 14285 L+ + ++ +GK+ D F K F E N + N ++ F Sbjct: 213 LAVVYPDIKFTF----NGKKVDGNFKRFAKQFGED-NIIQENDKVSIAFTTSP------- 260 Query: 14286 VAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAK-VETTG 14462 D + L + NNI ++GG H+ M + + I KK K +E T Sbjct: 261 ------DGFRH--LTYVNNIHTKNGGHHV---ECVMDDICEHLLPG--IKKKYKGIEVTK 307 Query: 14463 DDMREGLSCVLSVK-VPEPKFSSQTKDKLVSS--EVRAPVEEVVAKALEEFLLETPIDAK 14633 ++E L+ ++ ++ + +F SQTK++L S+ ++R ++ + AK + + LL+ + Sbjct: 308 ARVKECLTMLMFIRDMSNMRFDSQTKERLTSTYGDIRNHIQ-LDAKKIAQALLKN----E 362 Query: 14634 IICGKIVEXXXXXXXXXXXXEMTR--RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDS 14807 + IVE T+ +K V K C + A +++ EGDS Sbjct: 363 ALIMPIVEAALARKLAAEKAAETKAAKKATKAKVHKHIKANQCGKD--ADTTLFLTEGDS 420 Query: 14808 AGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDK 14987 A G RDR+ PLRGKV+N Y ++ ++++ + G +G++ N + Sbjct: 421 AIGYLIDVRDRELHGGFPLRGKVMNSWGMSYADMMKNKELFDICAITGLILGEKAENTN- 479 Query: 14988 LRYHRIIIMTDADVDG-AHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYL 15164 Y I IMTDAD DG I LL F + P++ E+G + + P+ + GK +++ Sbjct: 480 --YRNIAIMTDADHDGLGSIYPALLAF-FSNWPELFEQGRIRFVKTPVIIAQIGKTQKWF 536 Query: 15165 KDDVELNAHMLRLALQGSELVPGENAAAISGDALGELARS 15284 E + + +P + I G LG L +S Sbjct: 537 YTVAEYE--------EAKDTLPKHSIRYIKG--LGSLEKS 566 >ref|NP_891577.1|topoisomerase II large subunit Length = 607 Score = 127 bits (319), Expect = 4e-29 Identities = 161/600 (26%), Positives = 260/600 (43%), Gaps = 44/600 (7%) Frame = +3 Query: 13503 SSIQILEGLEAVRKRPGMYIGDT----------------SDGTGLHHLVFEVLDNSIDEA 13634 S +IL E V KR GMYIG T S GL ++ E++DNS+DEA Sbjct: 2 SEFRILSDREHVLKRAGMYIGSTTYEEHQRFLFGKWTKISYVPGLVKIIDEIIDNSVDEA 61 Query: 13635 LAG---YCNDIHVTIHADNSISVTDNGRGIPTDVKMNDK--HEPKRSAAEIVMTELHAGG 13799 + + N I V I +N ++VTDNGRGIP + + P+ AA T AG Sbjct: 62 IRTNFEFANVISVDIQ-NNIVTVTDNGRGIPQHMVTTPEGTQIPQPVAA---WTRTKAGS 117 Query: 13800 KFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVE 13979 FD + +++ G++GVG S N S W V DG+ + ++ +G E Sbjct: 118 NFDDTN-RLTQGMNGVGSSLSNFFSDWF-TGVTCDGE-----------TEMTVQCTNGAE 164 Query: 13980 VSPMLVTGDTENRGTEVHF----------MADPTIFGTVEYHYDILAKRMRELSFLNNGV 14129 + + ++ +GT V F M D ++ V L+ +++F NG Sbjct: 165 -NITWSSKPSKLKGTNVTFCPDFDHFEGYMMDNSVLDIVHDRLQSLSVIFPKITFKFNGK 223 Query: 14130 RIRLTDLRSGKEDDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDS 14309 RI K D+A FV L P V +G G + Sbjct: 224 RI------VSKFKDYAKLYNDDPFVIEDKNFSLALVPAV-------EGEGFK-------- 262 Query: 14310 YNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSC 14489 + F N + ++GGTH+ + + I K I K+ KV+ T ++ GL+C Sbjct: 263 ----SVSFANGLFTKNGGTHVDYVTDDLCEEIVK-----RIKKEYKVDVTKAAVKSGLTC 313 Query: 14490 VLSVK-VPEPKFSSQTKDKLV--SSEVRAPVE-------EVVAKALEEFLLETPIDAKII 14639 +L V+ +P +F SQTK++L + +++ ++ +V+AK E ++ PI A ++ Sbjct: 314 ILIVRELPNLRFDSQTKERLTNPTGDIKRHIDLDFKKLAKVIAKK-ENIIM--PIIAVVL 370 Query: 14640 CGKIVEXXXXXXXXXXXXEMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGS 14819 K + +R V V A+ D A+ +++ EGDSA Sbjct: 371 ARK---EAADKAAATKAAKAAKRAKVAKHV-----KANLIGTD-AETTLFLTEGDSAINY 421 Query: 14820 AKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYH 14999 RD+ PLRGK L + K++ + +I ++ G G + LD ++Y Sbjct: 422 LISVRDQDLHGGFPLRGKTLTTWEQPEAKIVKNAEIFNIMAITGLQFGVD--ALDVMQYK 479 Query: 15000 RIIIMTDADVDG-AHIRTLLLTFLYRQMPDMIERGYVYIAQPPLY--KIKAGKDERYLKD 15170 I IMTDAD DG I+ L++F + + P++ E G + + P+ + K G D R+ D Sbjct: 480 NIAIMTDADTDGIGSIKPSLISF-FARWPELFEDGRIRFIKTPIIIAEPKKGDDVRWYYD 538 >ref|NP_899293.1|topoisomerase II large subunit Length = 597 Score = 126 bits (316), Expect = 9e-29 Identities = 148/567 (26%), Positives = 245/567 (43%), Gaps = 26/567 (4%) Frame = +3 Query: 13506 SIQILEGLEAVRKRPGMYIGDTSDGT----------------GLHHLVFEVLDNSIDEAL 13637 + QIL + V KRPGMYIG GL ++ EV+DNS+DEA+ Sbjct: 6 NFQILSDKQHVLKRPGMYIGSVDREAHERFVLGEYKQIEYVPGLVKIINEVIDNSLDEAI 65 Query: 13638 AG---YCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFD 13808 + N I V + N I++ DNGRGIP D K+ D H + E T AG F+ Sbjct: 66 RTKFKFANVIEVKVEG-NRITIADNGRGIPQD-KVIDPHGNELLRPEAAWTRTKAGSNFE 123 Query: 13809 QNSYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSP 13988 + V G++GVG + N S + DGK A+ + G Sbjct: 124 DDRTTV--GMNGVGAALTNYFSHQF-IGKTCDGKNTVTVSCSNNAERIFVRTSKG----- 175 Query: 13989 MLVTGDTENRGTEVHFMADPT---IFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSG 14159 +GT V F+ D +FG +I+ R+ LS + + +G Sbjct: 176 -------GTQGTSVEFIPDFNRFGVFGISPQDEEIIKDRLAALSVAFPEITFKY----NG 224 Query: 14160 KEDDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTN 14339 K+ +Y T++ + E D V + +A +D + N F N Sbjct: 225 KKH-------APTLKQYAKMFGTDV-------SFEFDNVALFIAA--SDEFRHN--SFIN 266 Query: 14340 NIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVK-VPEP 14516 + +GGTH+ ++ ++ I I +K K+ ++ GL+ L ++ +P Sbjct: 267 GVHTINGGTHVDYFS---NKLADELIP--MIKRKHKINVPKPQLKNGLTIGLFIRNFVDP 321 Query: 14517 KFSSQTKDKLVSSE--VRAPVEEVVAKALEEFLLETPIDAKIICGKIVEXXXXXXXXXXX 14690 KF SQTK++L SS+ V ++++ + + +L D II I+E Sbjct: 322 KFDSQTKERLTSSQGDVSPYLKDISYDKIAKKILA---DDDIIM-PIIEALLAKQHAAEA 377 Query: 14691 XEMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRG 14870 E+ R++ K+ D + +++ EG SA G + RD K +PLRG Sbjct: 378 RELARKQKKAQNA----KVVDHIKATMPGGTLFLTEGKSAIGYLIKVRDSKKHGGIPLRG 433 Query: 14871 KVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDG-AHIR 15047 KVL+ R K++ ++++ +++ L +G +D + + YH I I+ DADVDG I Sbjct: 434 KVLSTWGKRPAKIMENKELCDIMSVLNIQLGNDD--IRDMYYHDIGILVDADVDGKGSIF 491 Query: 15048 TLLLTFLYRQMPDMIERGYVYIAQPPL 15128 LLL F Y P++ ++ + + P+ Sbjct: 492 PLLLAFFY-NWPELYKQKRIKFVRTPV 517 >ref|NP_943883.1|topoisomerase II large subunit Length = 613 Score = 119 bits (298), Expect = 1e-26 Identities = 154/588 (26%), Positives = 247/588 (42%), Gaps = 30/588 (5%) Frame = +3 Query: 13500 ASSIQILEGLEAVRKRPGMYIGDTSDGT----------------GLHHLVFEVLDNSIDE 13631 + ++L E MYIG TS T GL + EV+DNS+DE Sbjct: 2 SQEFKVLSDKEHCLINTDMYIGSTSTETHDVLVDGKFVQIAYVPGLVKITDEVIDNSVDE 61 Query: 13632 ALAG---YCNDIHVTIHADNSISVTDNGRGIPTDVKMNDK--HEPKRSAAEIVMTELHAG 13796 A+ + N I V I DN +SV DNGRG+P + + + P AA T AG Sbjct: 62 AIRTNFEHANQIEVVIK-DNQVSVKDNGRGLPQGMVVTPEGVEVPLPLAA---WTRARAG 117 Query: 13797 GKFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGV 13976 F + + G +GVG + N S E G V + Sbjct: 118 SNFSADRKTI--GKNGVGSALTNFFSDSF-----------VGETGNGTNTVTVRCTNNAD 164 Query: 13977 EVSPMLVTGDTENRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIR-LTDLR 14153 EVS G + +GT V F+ D T FG + D +++ + L V +T Sbjct: 165 EVSYTTKAG--KFKGTNVTFVPDFTRFGVFQLDEDF--EQVIQSRLLTLAVNFPPITFKY 220 Query: 14154 SGKEDDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCF 14333 +GK+ + F+ F + ++ N+ ++FFA E+ Y + L F Sbjct: 221 NGKKVEGKFSKFAAQFGDVVSHNDDNV--SLFFATSEE--------------YRQ--LSF 262 Query: 14334 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVK-VP 14510 N + + GG H+ G+ +++ + I ++ K+E ++E L L ++ + Sbjct: 263 VNGVHTKQGGNHVYGVLDSLSDELIPMIK-----RQHKIEINKARIKECLLIGLFIRNLV 317 Query: 14511 EPKFSSQTKDKLVS--SEVRAPVEEVVAKALEEFLLETP--IDAKIICGKIVEXXXXXXX 14678 PK+ QTK++L S +++R + + KAL +L+TP ID I + Sbjct: 318 APKYDGQTKERLSSPWAQIRDHMN-LDYKALARKILKTPEVIDPIIASALAKKEAADKAA 376 Query: 14679 XXXXXEMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 14858 + ++ V V G K +++ EGDSA G + R+ + Q Sbjct: 377 ATKAQKKAKKANVAKHVAAAGL-------GRLKTMLFLAEGDSAIGPFTRFRNEETQGSY 429 Query: 14859 PLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDG- 15035 PLRGK+LNV ++L +++I L+ L + + + Y I IMTDAD DG Sbjct: 430 PLRGKMLNVWNLPDHEVLKNKEIADLLGILNVELRSK----EAPAYTDIAIMTDADQDGK 485 Query: 15036 AHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGK--DERYLKDD 15173 I L + F Y+ P E+G ++I + P Y GK D Y +D+ Sbjct: 486 GSIAMLAIAFFYKFWPHWFEQGRIHIVRTPEYISTNGKKTDWSYSRDE 533 >ref|NP_049621.1|gp39 topoisomerase II, large subunit, N-terminal region Length = 516 Score = 113 bits (283), Expect = 6e-25 Identities = 134/521 (25%), Positives = 225/521 (43%), Gaps = 30/521 (5%) Frame = +3 Query: 13503 SSIQILEGLEAVRKRPGMYIGDTSDGT----------------GLHHLVFEVLDNSIDEA 13634 + I+IL +E ++KR GMYIG +++ T GL L+ E++DNS+DE Sbjct: 4 NEIKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDEG 63 Query: 13635 LAG---YCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHE--PKRSAAEIVMTELHAGG 13799 + + N I+VTI +N ++V DNGRGIP + E P AA T AGG Sbjct: 64 IRTKFKFANKINVTIK-NNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAA---WTIPKAGG 119 Query: 13800 KFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVE 13979 F + +V+GG++GVG S N S + DG+ + +++ E + G Sbjct: 120 NFGDDKERVTGGMNGVGSSLTNIFSVMF-VGETGDGQNNIVVRCSNGMENKSWEDIPG-- 176 Query: 13980 VSPMLVTGDTENRGTEVHFMADPTIFGTVEY---HYDILAKRMRELSFLNNGVRIRLTDL 14150 + +GT V F+ D F T E + DI R++ L+ + ++ Sbjct: 177 ----------KWKGTRVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTF--- 223 Query: 14151 RSGKEDDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLC 14330 +GK+ G K + ++ H V E++ + V D + + L Sbjct: 224 -NGKK----VQGNFKKYARQYDE-----HAIV----QEQENCSIAVGRS-PDGFRQ--LT 266 Query: 14331 FTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVK-V 14507 + NNI ++GG H+ AM + I +I +K K++ T ++E L+ V+ V+ + Sbjct: 267 YVNNIHTKNGGHHID---CAMDDICEDLIP--QIKRKFKIDVTKARVKECLTIVMFVRDM 321 Query: 14508 PEPKFSSQTKDKLVS--SEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEXXXXXXXX 14681 + QTK++L S E+R+ ++ K + L I II + Sbjct: 322 KNMRLIRQTKERLTSPFGEIRSHIQLDAKKISRDILNNEAILMPIIEAALARKLAAEKAA 381 Query: 14682 XXXXEMTRRKGVLDG---VGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQA 14852 K + L GK AD +++ EGDSA G RD++ Sbjct: 382 ETKAAKKASKAKVHKHIKANLCGKDADTT--------LFLTEGDSAIGYLIDVRDKELHG 433 Query: 14853 ILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDY 14975 PLRGKVLN Y +L ++++ + G +G++ + Sbjct: 434 GYPLRGKVLNSWGMSYADMLKNKELFDICAITGLVLGEKAF 474 >ref|NP_932362.1|topoisomerase II large subunit Length = 607 Score = 109 bits (272), Expect = 1e-23 Identities = 140/584 (23%), Positives = 244/584 (41%), Gaps = 30/584 (5%) Frame = +3 Query: 13500 ASSIQILEGLEAVRKRPGMYIGDT----------------SDGTGLHHLVFEVLDNSIDE 13631 + ++L E V RP MY+G S GL ++ E++DNS+DE Sbjct: 2 SDEFKVLTPREHVILRPNMYVGSVAYEPHERFLFGKFQSVSYVPGLVKIIDEIIDNSVDE 61 Query: 13632 ALAG---YCNDIHVTIHA-DNSISVTDNGRGIPTD-VKMNDKHEPKRSAAEIVMTELHAG 13796 + + N I + + S++V DNGRGIP V+ D PK AA T+ AG Sbjct: 62 GIRTDFKFANKIDIRFDLLEGSVTVVDNGRGIPQSMVETPDGEMPKPVAA---WTQTMAG 118 Query: 13797 GKFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGV 13976 FD + +VS G++GVG S N S + DGK A + E G Sbjct: 119 SNFDDTN-RVSMGMNGVGSSLTNFFSKKF-IGETCDGKNFLTVTCSEGASNIDWETKPG- 175 Query: 13977 EVSPMLVTGDTENRGTEVHFMADPTIFG--TVEYHY-DILAKRMRELSFLNNGVRIRLT- 14144 + +GT V+F+ D F T++ DI++ R+ LS + ++ + Sbjct: 176 -----------KIKGTSVYFIPDEKHFEGRTIDQQIIDIISDRITALSVVFPQIKFTING 224 Query: 14145 DLRSGKEDDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENV 14324 + S K D+A G + + E D + + N Sbjct: 225 QIASMKFADYAKMFGDESLIV------------------ESDRFSIAIC---NSPEGFRQ 263 Query: 14325 LCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVK 14504 + + N + ++GG+H+ L ++ + I KK K+E + ++E L+ V+ V+ Sbjct: 264 VSYVNGLNIKNGGSHIDYLVDGISEELMP-----AIKKKHKIEISKARVKECLTMVVVVR 318 Query: 14505 -VPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEF--LLETPIDAKIICGKIVEXXXXXX 14675 + +F SQTK++L + P EV + +F L + ++ I I+E Sbjct: 319 GMSNLRFDSQTKERLTN-----PAGEVKSHFDLDFKKLSKQIMNTDAILQPIIEAALARH 373 Query: 14676 XXXXXXEMTRRKGVLDGVGLPGKL-ADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQA 14852 MT+ + + A ++ + +++ EG+SA G + +D Sbjct: 374 LAAEKAAMTKAQKAAAKTNCAKHIKAGEWGRNDIETTLFLTEGESAIGYLLKVKDENLHG 433 Query: 14853 ILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVD 15032 LRGKV+N + +L + ++ + G + D ++ + +Y I IMTDAD D Sbjct: 434 GYALRGKVMNTWGMKGSDVLKNNELSDICAITGLDLANPD-DISQRKYKNIAIMTDADPD 492 Query: 15033 G-AHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERY 15161 G I LL F + + P + + G V + P+ + GK+ ++ Sbjct: 493 GQGSIYPCLLAF-FARWPKLFDEGSVRFVKTPVVILNKGKNTKW 535 >ref|NP_046564.1|unknown Length = 177 Score = 61.2 bits (147), Expect = 3e-09 Identities = 38/143 (26%), Positives = 69/143 (48%) Frame = -3 Query: 2428 LRFVHELNNDAKIMRYWFEEPYETFSELSQLYDRHVHDQRERRFVAVDAQDELVGLVELI 2249 L F NN MR W EE E + E RF+AV++ + +VG++E Sbjct: 38 LHFPRSANN----MREWVEEQLE---------------KDEFRFIAVESDNNIVGMIETF 78 Query: 2248 ELDYIHRRGEFQIIIAPQRQGRGYAGQATRLAIEYAFKVLNMRKLYLIVDTSNAAAIHVY 2069 + D + + + + +G+G+A + + + + F L +K+ V + N +I ++ Sbjct: 79 DCDRKNGTFGYYLAVFEPYRGKGFAKEMILMVLRFFFLELAYQKVNTTVYSFNNPSIRLH 138 Query: 2068 EKCGFQHEAELKEEFFGNGAYHN 2000 EK GF E +L++ F GAY++ Sbjct: 139 EKLGFMKEGQLRKIIFTKGAYYD 161 >ref|NP_705641.1|gp15 Length = 193 Score = 55.5 bits (132), Expect = 2e-07 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 5/129 (3%) Frame = +1 Query: 12541 LTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLL--VVDGDQLMAVATDGHRLAFSSMKLE 12714 LT+P + L A+QDIRYYLNG+LL V+GD L VATDGHR ++ Sbjct: 2 LTIPSHKLKAALTHA----AKQDIRYYLNGILLEAAVNGD-LHIVATDGHRAFIG--RIA 54 Query: 12715 GGTFGRQE---VIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELVSKLVEGKF 12885 GG E +I+P I + + + +A A++ G + ++G+F Sbjct: 55 GGATSWPEFTSLIIPTDAIKVAAKKGD-------VTVAPAGARYALGST--LFDAIDGRF 105 Query: 12886 PDFQRVIPK 12912 PD++R++P+ Sbjct: 106 PDWRRIVPR 114 >ref|NP_958120.1|gp15 Length = 193 Score = 55.5 bits (132), Expect = 2e-07 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 5/129 (3%) Frame = +1 Query: 12541 LTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLL--VVDGDQLMAVATDGHRLAFSSMKLE 12714 LT+P + L A+QDIRYYLNG+LL V+GD L VATDGHR ++ Sbjct: 2 LTIPSHKLKAALTHA----AKQDIRYYLNGILLEAAVNGD-LHIVATDGHRAFIG--RIA 54 Query: 12715 GGTFGRQE---VIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELVSKLVEGKF 12885 GG E +I+P I + + + +A A++ G + ++G+F Sbjct: 55 GGATSWPEFTSLIIPTDAIKVAAKKGD-------VTVAPAGARYALGST--LFDAIDGRF 105 Query: 12886 PDFQRVIPK 12912 PD++R++P+ Sbjct: 106 PDWRRIVPR 114 >ref|NP_043468.1|hypothetical protein Length = 68 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/64 (37%), Positives = 38/64 (59%) Frame = -3 Query: 9292 VLIALLRFYKVAVSPMLGNRCRFYPSCSDYAREAIQYHGAARGTYLAVRRVCRCHPFSAG 9113 V I L++ Y+ + + CRF P+CS+YA A+Q +G +G +A+ R+ RC + G Sbjct: 5 VSIKLIKLYQRLAPQKIRDACRFEPTCSNYAILALQKYGFWKGWKMALNRLGRC-KYPNG 63 Query: 9112 GVDL 9101 G DL Sbjct: 64 GEDL 67 >ref|YP_024951.1|putative DNA polymerase III protein Length = 171 Score = 41.6 bits (96), Expect = 0.003 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 6/119 (5%) Frame = +1 Query: 12667 VATDGHRLAFSSMKLEGGTFGRQ--EVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFT 12840 VATDGH+ +E + EVI+P + I L+ D+ V +++ Q Sbjct: 13 VATDGHKAGVFRYAVENDVPAGETAEVIIPHEAIDRLKAAKSDLVHFVRLEVEDRQCSLC 72 Query: 12841 F----GQVELVSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGV 13005 +++ V+ V+G++PD++R+ PK R +L +AA L K V Sbjct: 73 VDAMGARIQFVA--VDGRYPDYRRIFPKTMSGVPGQYRADLLMDFAKAAKLLIKKSPAV 129 >ref|NP_597898.1|regulatory protein cI Length = 262 Score = 40.4 bits (93), Expect = 0.006 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Frame = +3 Query: 6798 MPTSEEKAAFSERLKFALRRSPEKVTGA-TELANRFNLRHRGTHPVSPQTAHKWLTGRTI 6974 M +E+ FS+RL A ++ + G +LA R V+P+ KW G +I Sbjct: 28 MVQQKERETFSQRLALACDKAGLPLHGRQADLAVRLK--------VTPKAISKWFNGESI 79 Query: 6975 PTSDKLETLAEWLRVEVHWLH 7037 P DK+E+LA L +LH Sbjct: 80 PRKDKMESLASVLGTTAAYLH 100 >ref|NP_612999.1|CI protein Length = 235 Score = 36.6 bits (83), Expect = 0.090 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +3 Query: 6930 VSPQTAHKWLTGRTIPTSDKLETLAEWLRVEVHWLHYGPS 7049 +S + KW ++P +K+ LA++L V+V WL +G S Sbjct: 39 LSSKGVSKWFNAESLPRQEKMNALAKFLNVDVVWLQHGTS 78 >ref|NP_049485.1|repressor protein CI Length = 235 Score = 36.6 bits (83), Expect = 0.090 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +3 Query: 6930 VSPQTAHKWLTGRTIPTSDKLETLAEWLRVEVHWLHYGPS 7049 +S + KW ++P +K+ LA++L V+V WL +G S Sbjct: 39 LSSKGVSKWFNAESLPRQEKMNALAKFLNVDVVWLQHGTS 78 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,215,239 Number of Sequences: 14420 Number of extensions: 1382156 Number of successful extensions: 4860 Number of sequences better than 0.5: 14 Number of HSP's better than 0.5 without gapping: 3385 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4828 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 8283630682 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig290 (13,128 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_445687.1|putative helicase 49 1e-05 ref|YP_164394.1|DEAD box family helicase 49 1e-05 ref|YP_024499.1|putative helicase 47 4e-05 ref|NP_511031.1|helicase 40 0.008 >ref|NP_445687.1|putative helicase Length = 559 Score = 49.3 bits (116), Expect = 1e-05 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 2/109 (1%) Frame = -1 Query: 4917 EINARVKAGERVLITVLTKRMA--EQLTEFLADHGVKVRYLHSDIDTVERVEIIRDLRLG 4744 +I +++K + V+ +R+A ++L E + ++G+ ++ S ER+E I L+ Sbjct: 413 QIISKIKQLNQYPCLVIVRRIAIAKKLAEIMRENGIIADWVSSKTKLEERMEKIEALKNE 472 Query: 4743 TFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 4597 VL+ +L EGLDIP + LV +L K + LIQ IGR R Sbjct: 473 KLQVLISTSLADEGLDIPNLRLVVLLTQGK-----SRIKLIQRIGRVMR 516 >ref|YP_164394.1|DEAD box family helicase Length = 526 Score = 49.3 bits (116), Expect = 1e-05 Identities = 50/218 (22%), Positives = 99/218 (45%), Gaps = 3/218 (1%) Frame = -1 Query: 4908 ARVKAGERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDIDTVERVEIIRDLRLGTFDVL 4729 A+V + ++ + + +++ TE L G K ++ D + +R EI+ D ++VL Sbjct: 226 AKVAKDRKTVVFLPLVKTSQKFTELLNKKGFKAAEVNGD--SKDRAEILEDFDNDKYNVL 283 Query: 4728 VGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNVNGKA-ILYADNMTE 4552 LL EG D P V V +L K L + Q +GR R GK +L D + Sbjct: 284 CNSMLLTEGWDCPSVDCVVVLRPTKVRSLYS-----QMVGRGTRLHPGKTELLLLDFLWH 338 Query: 4551 SMKRAIGETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGVYNADDVRAELKEAQQRAKF 4372 + + + A IA NE++ + K+I++ V +L+ +++A Sbjct: 339 TDRHELCHP----AHLIAENEEVA---NAMTKKIEE--------SGVPLDLEAVEEQAAE 383 Query: 4371 EDMSEKQ--LAKEIKRLEKQMADYAKNLEFEKAAATRD 4264 + +++++ LAK++ ++++ L+FE + D Sbjct: 384 DVVAQREEALAKQLAEMKRRKRKLVDPLQFEMSIQAED 421 >ref|YP_024499.1|putative helicase Length = 582 Score = 47.4 bits (111), Expect = 4e-05 Identities = 32/95 (33%), Positives = 51/95 (53%) Frame = -1 Query: 4881 LITVLTKRMAEQLTEFLADHGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREG 4702 LI V + ++E L D V+ +LH +ID+ R E + D+R G V++ +L+ EG Sbjct: 449 LIIVNFIEHGDTISEMLNDLDVEHYFLHGEIDSETRREKLNDMRSGKLKVMIATSLIDEG 508 Query: 4701 LDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 4597 +DI ++ + IL A + R +Q IGRA R Sbjct: 509 VDISGINAL-ILGAGGKSL----RQTLQRIGRALR 538 >ref|NP_511031.1|helicase Length = 418 Score = 39.7 bits (91), Expect = 0.008 Identities = 28/125 (22%), Positives = 55/125 (44%) Frame = -1 Query: 4893 GERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINL 4714 GE+ ++ + +E++ G+ ++ R +II+ R G VL ++L Sbjct: 192 GEQAILYASSIYQSEKMAASFNAAGISSAHIDGKTPKPIRDDIIKQFREGELKVLCNLDL 251 Query: 4713 LREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNVNGKAILYADNMTESMKRAI 4534 + EG D+P+ S V +L + L ++S+ R R GK D++ + + Sbjct: 252 IGEGFDVPDCSTVIMLRPTQSLSLYIQQSM-----RGMRYKQGKTATIIDHVGNVKRFGL 306 Query: 4533 GETER 4519 + ER Sbjct: 307 PDMER 311 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,854,321 Number of Sequences: 14420 Number of extensions: 1124408 Number of successful extensions: 4149 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 3019 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4139 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 6301791628 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig291 (11,703 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_666012.1|adenine methyltransferase 94 3e-19 ref|NP_958699.1|adenine DNA methyltransferase 92 2e-18 ref|NP_818050.1|gp77 86 1e-16 ref|NP_818049.1|gp76 72 2e-12 ref|NP_038314.1|ORF13 68 2e-11 ref|NP_108695.1|putative methylase 66 7e-11 ref|NP_892105.1|DNA adenine-methylase 63 6e-10 ref|NP_543076.1|putative DNA methylase 62 2e-09 ref|NP_758910.1|ORF17 61 2e-09 ref|YP_006632.1|putative DNA adenine methylase 61 2e-09 ref|NP_046948.1|gp52 61 2e-09 ref|NP_599080.1|unknown 60 4e-09 ref|NP_705636.1|gp10 60 4e-09 ref|NP_958114.1|gp10 60 4e-09 ref|NP_944318.1|gp10 56 1e-07 ref|NP_996592.1|adenine DNA methyltransferase 53 8e-07 ref|NP_996640.1|adenine DNA methyltransferase 53 8e-07 ref|NP_536413.1|putative DNA cytosine methylase 52 1e-06 ref|NP_666000.1|putative N4-cytosine methyltransferase 52 2e-06 ref|NP_817550.1|gp101 50 7e-06 ref|YP_112541.1|modification methylase 49 1e-05 ref|NP_203418.1|DNA adenine methylase Mox 49 2e-05 ref|NP_818455.1|gp155 47 5e-05 ref|NP_817549.1|gp100 41 0.002 ref|YP_077259.1|Cytosine methylase, similar to N4-cytosine methy... 40 0.006 ref|NP_945276.1|transferase 40 0.007 ref|YP_025041.1|putative transposase B 38 0.027 ref|NP_958267.1|hypothetical protein 37 0.047 ref|NP_536395.1|ISBt3 transposase subunit protein 36 0.10 ref|NP_859396.1|hypothetical protein 34 0.40 >ref|NP_666012.1|adenine methyltransferase Length = 419 Score = 94.0 bits (232), Expect = 3e-19 Identities = 76/217 (35%), Positives = 98/217 (45%), Gaps = 22/217 (10%) Frame = -3 Query: 1945 LYNGDCLVAMP-KLAPESVDCIVTDPPYLVNFR----------DRSGRSIANDVNG--DW 1805 +Y DC+ M +L +SVD ++TDPPY ++ SG +D++G Sbjct: 172 VYFEDCIEGMSQRLEGDSVDLVLTDPPYGIDIDLSETLGSRSVQHSGTVANDDLDGALSV 231 Query: 1804 LAPAFAEMFRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKSYASK-----A 1640 A EM RV+K F W DLF D F V V+ K+ + Sbjct: 232 FRDAAKEMRRVVKPGGHVYVFASWKTYDLFRDILVDEEFTVRNCIVWCKTVPNNQPNFGT 291 Query: 1639 GLVKY--QHESAYL--LAKGRPAAPAAPIADVMPFPYSGNRHHPTEKPVAALRTLISAFT 1472 G + QHE L RP P V SGN H PT+KPV L I + Sbjct: 292 GGTNWGLQHEFVIYATLDSPRPLKHTRPDIIVHKHSTSGNEH-PTQKPVGLLEEFIEQSS 350 Query: 1471 QPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATYF 1361 QPGDVVLDPFAGSGST VA+ + R IG EL+ + Sbjct: 351 QPGDVVLDPFAGSGSTAVASVQTDRECIGFELEGDVY 387 >ref|NP_958699.1|adenine DNA methyltransferase Length = 251 Score = 91.7 bits (226), Expect = 2e-18 Identities = 73/227 (32%), Positives = 104/227 (45%), Gaps = 33/227 (14%) Frame = -3 Query: 1945 LYNGDCLVAMPKLAPESVDCIVTDPPYLVNFRDRSGRSIANDV--------------NGD 1808 L G+ L A+ + ESVD ++TDPPY R ++ D +GD Sbjct: 8 LIQGEALPALIAMPSESVDAVITDPPYSSGGFSRDDKAKDPDAKYTQSGSQGRYPTFSGD 67 Query: 1807 ---------WLAPAFAEMFRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKS 1655 W + AE RVLK ++F W ++ L DA +A G G + K Sbjct: 68 SRDQRSYLTWCSLWIAECVRVLKPGGYFMAFTDWRQLPLMSDAVQAGGVFWRGLIAWDKG 127 Query: 1654 YASKAGLVKY-QHESAYLLAKGRPAAPAAPIADVMPFPYSG---------NRHHPTEKPV 1505 ++A Y +H+ Y++ + AA + P+ G ++HH T KP Sbjct: 128 RGARAPHKGYFRHQCEYVVWGTKGAA----VQLEHDGPFDGCIQAVVRRDDKHHLTGKPT 183 Query: 1504 AALRTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATY 1364 A +R L+ PG VVLDPFAGSG+T VAA GRR+IGIE + Y Sbjct: 184 ALMRELVRP-VMPGGVVLDPFAGSGTTGVAAVLSGRRFIGIERETAY 229 >ref|NP_818050.1|gp77 Length = 217 Score = 85.5 bits (210), Expect = 1e-16 Identities = 71/218 (32%), Positives = 94/218 (43%), Gaps = 12/218 (5%) Frame = -3 Query: 1981 PYLDSMELTVSYLYNGDCLVAMPKLAPESVDCIVTDPPY---LVNFRDRSGRSIANDVNG 1811 PY ++T LY+GDCL LA D +VTDPPY V+ + R +AND N Sbjct: 3 PYYTDDQVT---LYHGDCLEITEWLA---ADVLVTDPPYGMAFVSSWTKQKRPVANDENT 56 Query: 1810 DWLAPAFAEMFRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKSYASKAGLV 1631 A E +G K F W+ A + + G+ Sbjct: 57 THRDNALQE--------------WGVEKPAAVFGTWRVAKPANVRQVLIWDKRGAGPGMG 102 Query: 1630 KY------QHESAYLL---AKGRPAAPAAPIADVMPFPYSGNRHHPTEKPVAALRTLISA 1478 HE YL+ AK + + P + HPT KP+ + T+I+A Sbjct: 103 DLTTAFGTSHEEIYLIGHWAKRSTRRGSVITTESSPSDLTSRIGHPTPKPIGLMETIIAA 162 Query: 1477 FTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATY 1364 P VV DPFAGSGST VAAR LGR+ IG+EL+ Y Sbjct: 163 --APDGVVADPFAGSGSTLVAARNLGRKAIGVELEEKY 198 >ref|NP_818049.1|gp76 Length = 224 Score = 71.6 bits (174), Expect = 2e-12 Identities = 76/230 (33%), Positives = 101/230 (43%), Gaps = 24/230 (10%) Frame = -3 Query: 1981 PYLDSMELTVSYLYNGDCLVAMPKLAPESVDCIVTDPPYLVNFR----------DRSGRS 1832 PY +T LY+GDCL LA D +VTDPPY +++ +RSG Sbjct: 3 PYYTDDRVT---LYHGDCLEITEWLA---ADVLVTDPPYGRDWKQGELKGHFTANRSG-- 54 Query: 1831 IANDVNGDWLAPAFAEMFRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKSY 1652 I ND + D RD + +G + +F D A V+ K Sbjct: 55 IQNDSSTD-------------TRD-YALQLWGDRQAIVFGDLMLAPPIGTKHVLVYRKP- 99 Query: 1651 ASKAGL------VKYQHESAYLLAKGR------PAAPAAPIADVM--PFPYSGNRHHPTE 1514 S AGL + E+ YL+ G ++ A A +M G HP E Sbjct: 100 -SNAGLRGAVGGYRRDAEAVYLIGPGHGSGIGGESSVIATSAAMMGGSTGLGGRTGHPHE 158 Query: 1513 KPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATY 1364 KP+ L L+ + + VV DPFAGSGST VAAR LGRR IG+EL+ Y Sbjct: 159 KPLDVLERLLDSTS---GVVADPFAGSGSTLVAARNLGRRAIGVELEERY 205 >ref|NP_038314.1|ORF13 Length = 250 Score = 67.8 bits (164), Expect = 2e-11 Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 9/143 (6%) Frame = -3 Query: 1750 ISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKSYASKA-----GLVKYQHESAYLLAKGRP 1586 I F+ W + ++ K GF A FTK + + +V E+ L P Sbjct: 96 IVFHSWQQREMVIQCGKKHGFNNAYPLYFTKKTSPQVLKANMKIVGATEEATVLYRDKLP 155 Query: 1585 AAP--AAPIADVMPFPYSGNRH--HPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCV 1418 A + + MP+ + HPT+KP+ L+ LI FT P DVV+DP AGSGST Sbjct: 156 KFNNNGAMVLNHMPWEKDSSYPTIHPTQKPIPVLKRLIELFTDPEDVVIDPVAGSGSTIR 215 Query: 1417 AARELGRRYIGIELDATYFAAAK 1349 AA E+ R G E+ ++ A+ Sbjct: 216 AAVEMNRNAYGFEIKKEFYKKAQ 238 >ref|NP_108695.1|putative methylase Length = 252 Score = 66.2 bits (160), Expect = 7e-11 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 10/144 (6%) Frame = -3 Query: 1750 ISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKSYASKA--GLVKYQHESAYLLAKGRPAAP 1577 I F + ++ + D + GF+ A VF K Y+++ +K + Y + R P Sbjct: 95 IVFCAFQQIQMVMDYGEKYGFKHAYPLVFIKDYSAQVLKANMKIVGATEYAVVLYRDKLP 154 Query: 1576 -----AAPIADVMPFPYSGN---RHHPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTC 1421 I + MP+ + HPT+KP + L+ LI FT GD ++DP GSGST Sbjct: 155 KFNNNGEMIFNWMPWGRDNKTIPKIHPTQKPQSVLKRLIEIFTDKGDTIIDPCMGSGSTI 214 Query: 1420 VAARELGRRYIGIELDATYFAAAK 1349 A+ ELGR G E+ ++ AK Sbjct: 215 RASIELGRNAYGFEIKKDFYNLAK 238 >ref|NP_892105.1|DNA adenine-methylase Length = 357 Score = 63.2 bits (152), Expect = 6e-10 Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 7/101 (6%) Frame = -3 Query: 1642 AGLVKYQHESAY---LLAKGRPAAPAAPIADVMPFP----YSGNRHHPTEKPVAALRTLI 1484 AGL++ E + +L + + + P +V +P Y G HP EKP+ + +I Sbjct: 245 AGLIRQYDELRHEYEVLRRPFNVSKSVPHTNVWTYPPVQHYPGK--HPCEKPLPMMLDII 302 Query: 1483 SAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATYF 1361 +A T+PGD+V D F GSG+T AA +LGRR +G+EL+ F Sbjct: 303 AASTRPGDLVADFFMGSGATIKAAEQLGRRSLGVELEEERF 343 Score = 39.7 bits (91), Expect = 0.007 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Frame = -3 Query: 1972 DSMELTVSYLYNGDCLVAMPKLAPESVDCIVTDPPYL---VNFRDRSGRSIANDVNGDWL 1802 +++++ + L + D L + L +D I+TDPPY N D S+ + + WL Sbjct: 3 NTVKINSASLVHADSLQYIKTLPDNYIDAIITDPPYYRVKSNSWDNQWASVPDFL--AWL 60 Query: 1801 APAFAEMFRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKSYASKAGLVKYQ 1622 FAE +RVLK + F G K+ + F V H V+ K G K Sbjct: 61 DEFFAEFWRVLKPNGSLYLFCG-PKLSADTEILMRDRFNVLNHIVWAKPSGRWKGASKES 119 Query: 1621 HESAY 1607 S + Sbjct: 120 FRSYF 124 >ref|NP_543076.1|putative DNA methylase Length = 352 Score = 61.6 bits (148), Expect = 2e-09 Identities = 36/76 (47%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Frame = -3 Query: 1576 AAPIADVMPFP----YSGNRHHPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAAR 1409 A P DV + Y G HP EKP LR +I+ ++PGD+V D F GSGST AA Sbjct: 264 AVPYTDVWMYKPVQYYLGK--HPCEKPAEMLRQIITTSSRPGDLVADFFMGSGSTVKAAM 321 Query: 1408 ELGRRYIGIELDATYF 1361 LGRR IG+EL+ F Sbjct: 322 ALGRRAIGVELETGRF 337 Score = 42.4 bits (98), Expect = 0.001 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Frame = -3 Query: 1972 DSMELTVSYLYNGDCLVAMPKLAPESVDCIVTDPPYL-VNFRDRSGRSIANDVNGDWLAP 1796 ++++++ L N DCL + L SVD IVTDPPY V + +D WL Sbjct: 3 NTVKISSYELINADCLEFIQTLPENSVDLIVTDPPYFKVKPEGWDNQWKGDDDYLKWLDQ 62 Query: 1795 AFAEMFRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTK 1658 A+ +RVLK F G +++ + F V H ++ K Sbjct: 63 CLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAK 107 >ref|NP_758910.1|ORF17 Length = 359 Score = 61.2 bits (147), Expect = 2e-09 Identities = 31/75 (41%), Positives = 44/75 (58%) Frame = -3 Query: 1579 PAAPIADVMPFPYSGNRHHPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAARELG 1400 P + D P Y +H P EKP+ +R ++S + G VVLDPF GSG+T A ELG Sbjct: 269 PYTDVWDFDPVQYYPGKH-PCEKPLPLMRHIVSTSAREGMVVLDPFMGSGATAKACIELG 327 Query: 1399 RRYIGIELDATYFAA 1355 ++G+E+D F+A Sbjct: 328 CHFVGVEMDDDIFSA 342 Score = 37.0 bits (84), Expect = 0.047 Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 16/135 (11%) Frame = -3 Query: 1945 LYNGDCLVAMPKLAPESVDCIVTDPPYLVNFRDRSGRSIANDVNG-DWLAPAFAEMFRVL 1769 ++N DC + L SVD I TDPPY +D ++ WL +++R+L Sbjct: 14 VFNADCSQLLKTLPDNSVDLIATDPPYFRVKQDAXDNQWDDETEFLAWLDDILFDLWRIL 73 Query: 1768 KRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKSYA-----SKAGLVKY------- 1625 K F +++ + A F V H V+ K K GL ++ Sbjct: 74 KPSGSLYLFCS-DRLAARTEVLIAERFNVLNHIVWRKENGVHKRHRKEGLRRFCPQTERI 132 Query: 1624 ---QHESAYLLAKGR 1589 +H A AKGR Sbjct: 133 IFAEHYGAEGFAKGR 147 >ref|YP_006632.1|putative DNA adenine methylase Length = 353 Score = 61.2 bits (147), Expect = 2e-09 Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 4/74 (5%) Frame = -3 Query: 1570 PIADVMPFP----YSGNRHHPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAAREL 1403 P +V +P Y G HP EKP+ + +ISA T+PGDVV D F GSG+T AA +L Sbjct: 272 PHTNVWEYPPVQYYPGK--HPCEKPLQMMLDIISASTRPGDVVADFFMGSGATIKAALQL 329 Query: 1402 GRRYIGIELDATYF 1361 GR IG+EL+ F Sbjct: 330 GREAIGVELEEERF 343 Score = 42.4 bits (98), Expect = 0.001 Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 18/147 (12%) Frame = -3 Query: 1972 DSMELTVSYLYNGDCLVAMPKLAPESVDCIVTDPPYL---VNFRDRSGRSIANDVNGDWL 1802 +++++ + L + D L + L S+D I+TDPPY N D S+ + + WL Sbjct: 3 NTVKINSAQLVHADSLEFIKTLPDNSIDAIITDPPYYRVKANAWDNQWPSVTDYL--AWL 60 Query: 1801 APAFAEMFRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTK-----SYASKAG 1637 FAE +RVLK F G K+ + F V H ++ K + A K G Sbjct: 61 DEFFAEFWRVLKPAGSLYVFCG-PKLSSDTELLLRDRFNVLNHIIWAKPSGRWNGARKEG 119 Query: 1636 LVKY----------QHESAYLLAKGRP 1586 Y +H A AKG+P Sbjct: 120 FRAYFPASEHILFAEHYGAEGFAKGQP 146 >ref|NP_046948.1|gp52 Length = 284 Score = 61.2 bits (147), Expect = 2e-09 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 4/91 (4%) Frame = -3 Query: 1633 VKYQHESAYLLAKGRPAAPAAPIADVMPFP----YSGNRHHPTEKPVAALRTLISAFTQP 1466 +K Q+ES L + P DV FP Y G HP EKP A + +I + ++P Sbjct: 179 LKAQYES---LRRPFSVTADVPYTDVWEFPPVQYYPGK--HPCEKPAAMMEHIIRSSSRP 233 Query: 1465 GDVVLDPFAGSGSTCVAARELGRRYIGIELD 1373 GDVV D F GSGST A +LGR+ IG+E++ Sbjct: 234 GDVVADFFMGSGSTIKEALKLGRKAIGVEIE 264 >ref|NP_599080.1|unknown Length = 350 Score = 60.5 bits (145), Expect = 4e-09 Identities = 29/55 (52%), Positives = 39/55 (70%) Frame = -3 Query: 1525 HPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATYF 1361 HP EKP LR +I+A ++PGD+V D F GSGST AA LGR+ +G+EL++ F Sbjct: 283 HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALGRQALGVELESERF 337 Score = 41.6 bits (96), Expect = 0.002 Identities = 40/142 (28%), Positives = 56/142 (39%), Gaps = 5/142 (3%) Frame = -3 Query: 1945 LYNGDCLVAMPKLAPESVDCIVTDPPYLVNFRDRSGRSIANDVNGD-----WLAPAFAEM 1781 L N DCL + L +S+D IVTDPPY F+ + N GD WL A+ Sbjct: 12 LINADCLHFIQSLPDDSIDLIVTDPPY---FKVKP-NGWDNQWKGDEDYLKWLDHCLAQF 67 Query: 1780 FRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKSYASKAGLVKYQHESAYLL 1601 +RVLK F G +++ + F V H ++ K G K + + Sbjct: 68 WRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCNKESLRAYF-- 124 Query: 1600 AKGRPAAPAAPIADVMPFPYSG 1535 PA A+ PY G Sbjct: 125 ----PATERVLFAEHYQGPYRG 142 >ref|NP_705636.1|gp10 Length = 262 Score = 60.5 bits (145), Expect = 4e-09 Identities = 30/54 (55%), Positives = 35/54 (64%) Frame = -3 Query: 1525 HPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATY 1364 HPT KPVA + LI +T GD VLD GSG+T VA GRR+IG+E DA Y Sbjct: 188 HPTAKPVALMEYLIRTYTSEGDTVLDNCMGSGTTGVACINTGRRFIGMEKDADY 241 >ref|NP_958114.1|gp10 Length = 262 Score = 60.5 bits (145), Expect = 4e-09 Identities = 30/54 (55%), Positives = 35/54 (64%) Frame = -3 Query: 1525 HPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATY 1364 HPT KPVA + LI +T GD VLD GSG+T VA GRR+IG+E DA Y Sbjct: 188 HPTAKPVALMEYLIRTYTSEGDTVLDNCMGSGTTGVACINTGRRFIGMEKDADY 241 >ref|NP_944318.1|gp10 Length = 233 Score = 55.8 bits (133), Expect = 1e-07 Identities = 29/59 (49%), Positives = 35/59 (59%) Frame = -3 Query: 1525 HPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATYFAAAK 1349 HPT+KPVA L LI PG VVLD G ST +AA + G +IGIE D +F A+ Sbjct: 167 HPTQKPVALLEYLIRTHAAPGAVVLDNCMGCASTALAAMQAGCAFIGIENDVEHFETAQ 225 >ref|NP_996592.1|adenine DNA methyltransferase Length = 200 Score = 52.8 bits (125), Expect = 8e-07 Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 33/187 (17%) Frame = -3 Query: 1945 LYNGDCLVAMPKLAPESVDCIVTDPPYLVNFRDRSGRSIANDV--------------NGD 1808 L G+ L A+ + ESVD ++TDPPY R ++ D +GD Sbjct: 8 LIQGEALPALIAMPSESVDAVITDPPYSSGGFSRDDKAKDPDAKYTQSGSQGRYPTFSGD 67 Query: 1807 ---------WLAPAFAEMFRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKS 1655 W + AE RVLK ++F W ++ L DA +A G G + K Sbjct: 68 SRDQRSYLTWCSLWIAECVRVLKPGGYFMAFTDWRQLPLMSDAVQAGGVFWRGLIAWDKG 127 Query: 1654 YASKAGLVKY-QHESAYLLAKGRPAAPAAPIADVMPFPYSG---------NRHHPTEKPV 1505 ++A Y +H+ Y++ + AA + P+ G ++HH T KP Sbjct: 128 RGARAPHKGYFRHQCEYVVWGTKGAA----VQLEHDGPFDGCIQAVVRRDDKHHLTGKPT 183 Query: 1504 AALRTLI 1484 A +R L+ Sbjct: 184 ALMRELV 190 >ref|NP_996640.1|adenine DNA methyltransferase Length = 258 Score = 52.8 bits (125), Expect = 8e-07 Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 33/187 (17%) Frame = -3 Query: 1945 LYNGDCLVAMPKLAPESVDCIVTDPPYLVNFRDRSGRSIANDV--------------NGD 1808 L G+ L A+ + ESVD ++TDPPY R ++ D +GD Sbjct: 8 LIQGEALPALIAMPSESVDAVITDPPYSSGGFSRDDKAKDPDAKYTQSGSQGRYPTFSGD 67 Query: 1807 ---------WLAPAFAEMFRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKS 1655 W + AE RVLK ++F W ++ L DA +A G G + K Sbjct: 68 SRDQRSYLTWCSLWIAECVRVLKPGGYFMAFTDWRQLPLMSDAVQAGGVFWRGLIAWDKG 127 Query: 1654 YASKAGLVKY-QHESAYLLAKGRPAAPAAPIADVMPFPYSG---------NRHHPTEKPV 1505 ++A Y +H+ Y++ + AA + P+ G ++HH T KP Sbjct: 128 RGARAPHKGYFRHQCEYVVWGTKGAA----VQLEHDGPFDGCIQAVVRRDDKHHLTGKPT 183 Query: 1504 AALRTLI 1484 A +R L+ Sbjct: 184 ALMRELV 190 >ref|NP_536413.1|putative DNA cytosine methylase Length = 378 Score = 52.4 bits (124), Expect = 1e-06 Identities = 25/49 (51%), Positives = 33/49 (67%) Frame = -3 Query: 1510 PVAALRTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATY 1364 P A + + A ++PGDVV DPF GSG+T A+ LGRR+IG EL+ Y Sbjct: 312 PEALVEPCVLAGSRPGDVVFDPFFGSGTTGQVAQRLGRRFIGCELNPDY 360 >ref|NP_666000.1|putative N4-cytosine methyltransferase Length = 448 Score = 51.6 bits (122), Expect = 2e-06 Identities = 22/42 (52%), Positives = 33/42 (78%) Frame = -3 Query: 1474 TQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATYFAAAK 1349 T PG +VLDPFAG+G+TC+ A+ GRR+IG++L+ + A A+ Sbjct: 377 TNPG-IVLDPFAGAGTTCLVAKRFGRRFIGVDLNPEFVAMAQ 417 >ref|NP_817550.1|gp101 Length = 231 Score = 49.7 bits (117), Expect = 7e-06 Identities = 27/54 (50%), Positives = 32/54 (59%) Frame = -3 Query: 1525 HPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATY 1364 H T KP+A +R L+ T PG VVLDPFAGSG+T A R I IE + Y Sbjct: 164 HSTVKPLALMRWLVKLVTPPGGVVLDPFAGSGTTVEACLLEKFRCIAIENEPDY 217 >ref|YP_112541.1|modification methylase Length = 216 Score = 48.9 bits (115), Expect = 1e-05 Identities = 53/228 (23%), Positives = 85/228 (37%), Gaps = 21/228 (9%) Frame = -3 Query: 1972 DSMELTVSYLYNGDCLVAMPKLAPESVDCIVTDPPYLVNFRDRSGRSIANDVNG------ 1811 D++E+T N D ++ M + D + DPPY + +R G++ N Sbjct: 5 DNIEIT-----NEDNMLLMARYPDNYFDLAIVDPPYGI---ERGGQTETFTKNPKHKRKL 56 Query: 1810 ----DW-----LAPAFAEMFRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTK 1658 DW F E+FRV K + W A +FV Sbjct: 57 HQQKDWDNSIPTKDYFNELFRVSKNQII------WG----------------ANYFVKHL 94 Query: 1657 SYASKAGLVKYQHESAYLLAKGRPAAPAAPIADVMP------FPYSGNRHHPTEKPVAAL 1496 +++S + ++ + ++ G A + A G HPT+KP Sbjct: 95 NHSSMGWIFWFKGQEGLTMSDGEIAYSSFQKATRQININRGLIAQKGGSIHPTQKPEKLY 154 Query: 1495 RTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATYFAAA 1352 R L+ + + GD +LD GSGS +A + ELD Y+ AA Sbjct: 155 RWLLENYAKEGDKILDTHLGSGSIAIACHDYKFDLTACELDKEYYDAA 202 >ref|NP_203418.1|DNA adenine methylase Mox Length = 258 Score = 48.5 bits (114), Expect = 2e-05 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%) Frame = -3 Query: 1519 TEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIEL-DATYFAAAK 1349 T+KPVA + L+ PG +V D FAGSGST +A GRR+IG ++ +A AAA+ Sbjct: 189 TQKPVALVEPLVRNACPPGGLVADFFAGSGSTALACLATGRRFIGCDIREAQCEAAAR 246 >ref|NP_818455.1|gp155 Length = 436 Score = 47.0 bits (110), Expect = 5e-05 Identities = 35/89 (39%), Positives = 43/89 (48%) Frame = -3 Query: 1630 KYQHESAYLLAKGRPAAPAAPIADVMPFPYSGNRHHPTEKPVAALRTLISAFTQPGDVVL 1451 KYQ ++ AK RP+ A VM H T KP+ +R L PG V+L Sbjct: 347 KYQAKAP---AKERPSYVNEDGAKVM---------HSTVKPLTLMRWLARLVCPPGGVIL 394 Query: 1450 DPFAGSGSTCVAARELGRRYIGIELDATY 1364 DPFAGSG+T A G I IE +A Y Sbjct: 395 DPFAGSGTTVEACLLEGFDCIAIESEADY 423 Score = 38.5 bits (88), Expect = 0.016 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 5/90 (5%) Frame = -3 Query: 1936 GDCLVAMPKLAPESVDCIVTDPPYLVNFRDR--SGRSIANDVNGDWLAPAFAEMFRVLKR 1763 GDC + SVD I+TDPPY + F + G IA DV + + RVLK Sbjct: 9 GDCRGVLASFPDASVDAILTDPPYELGFMGKKWDGSGIAFDVE------MWEQCLRVLKP 62 Query: 1762 DAVCISFYG---WNKVDLFFDAWKAAGFRV 1682 ++F G W+++ + A + AGF + Sbjct: 63 GGHLLAFGGSRTWHRLTV---AIEDAGFEI 89 >ref|NP_817549.1|gp100 Length = 187 Score = 41.2 bits (95), Expect = 0.002 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 5/93 (5%) Frame = -3 Query: 1945 LYNGDCLVAMPKLAPESVDCIVTDPPYLVNFRDR--SGRSIANDVNGDWLAPAFAEMFRV 1772 ++ GDC + +L SVD IVTDPPY + F + G IA DV + + RV Sbjct: 22 IHLGDCRDILAELEDASVDSIVTDPPYELGFMGKKWDGSGIAFDVE------MWEQCLRV 75 Query: 1771 LKRDAVCISFYG---WNKVDLFFDAWKAAGFRV 1682 LK ++F G W+++ + A + AGF + Sbjct: 76 LKPGGHLLAFGGSRTWHRLTV---AIEDAGFEI 105 >ref|YP_077259.1|Cytosine methylase, similar to N4-cytosine methylase Length = 297 Score = 40.0 bits (92), Expect = 0.006 Identities = 19/39 (48%), Positives = 25/39 (64%) Frame = -3 Query: 1489 LISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELD 1373 LI F+ G+ VLDPF GS +T A EL R+ +G E+D Sbjct: 205 LIKLFSYVGETVLDPFMGSATTLKVAVELRRKAVGYEID 243 >ref|NP_945276.1|transferase Length = 421 Score = 39.7 bits (91), Expect = 0.007 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = -3 Query: 1534 NRHHPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATY 1364 N HPT KP+ + + ++ GD +LD F G GST + R +ELD Y Sbjct: 345 NDIHPTMKPLKLIARCVLNSSKKGDKILDSFNGGGSTLMVCERSERVCYAMELDPVY 401 >ref|YP_025041.1|putative transposase B Length = 280 Score = 37.7 bits (86), Expect = 0.027 Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 4/79 (5%) Frame = -1 Query: 10848 RIREANLIRSMSCKGCSPHNAACEGFLGRLKTELFYS----RD*QTITTDLFIEVVDSYI 10681 R+ E ++ S S KGC NA E F LK E Y D +T LF E V ++ Sbjct: 194 RLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLF-EYVHAF- 251 Query: 10680 RWYNEKRSKISLGALSPIE 10624 YN KR SLG +P++ Sbjct: 252 --YNRKRIHSSLGYQTPLQ 268 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 37.0 bits (84), Expect = 0.047 Identities = 73/277 (26%), Positives = 96/277 (34%), Gaps = 7/277 (2%) Frame = +1 Query: 3088 AMHLRRSGRPG---PSEAARGQPCAHEPTRSRPR-RSNPARCAAEGHTRGRLQLRQFRSL 3255 A LRR+ P P+ R P AH R+RP PAR + H R+ S Sbjct: 5 ARRLRRARPPHTRTPAPRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRAPSR 64 Query: 3256 SSFAPWGFRSVDIAPYEQSRGRGRTGKAVHVGGLGKHCGDIHLHVGPRAKAARPVHADHL 3435 + P P ++R R R + G H P A P ++ Sbjct: 65 PAAGPRRH-----PPVARTRPRTRAPECAPDPGPAVH------PAAPGCAPAAPAAPEYA 113 Query: 3436 EQLQVPRAISVDRHRGAHVRRQPIAVARREPRERTLNRAIAELSRQRDPICSETNRLPAA 3615 L+ PRA D RGAH R R PR RT + +R R P+ E R Sbjct: 114 PALR-PRAPECD--RGAHHLR------TRAPRTRTRAVPLGPGARVRTPV--EDRRRTRR 162 Query: 3616 GRQHEVFDALDP---TAVCQTRGLQRHHKARNLHVSGAVGPFDAQLRAVFVLRDAHRERR 3786 R+ + + P V + RG +R R + V GP A R RR Sbjct: 163 RRRPDPRRRVQPRLGVGVHRRRGARR--VGRRVRVRARPGP-----------GAARRPRR 209 Query: 3787 RGEPFTQHALHQLRGLDKRQHVGEHRGRGGGFPADPR 3897 R P A+ R +R HR R P R Sbjct: 210 RPHPEHPRAVRPRRRTGRR-----HRRRASLRPRHRR 241 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 35.8 bits (81), Expect = 0.10 Identities = 23/75 (30%), Positives = 35/75 (46%) Frame = -1 Query: 10848 RIREANLIRSMSCKGCSPHNAACEGFLGRLKTELFYSRD*QTITTDLFIEVVDSYIRWYN 10669 R+ EA + S+ +G S NA E G KTEL + R + + ++ ++ WYN Sbjct: 192 RLAEAGIEPSVGSRGDSYDNALAETINGLYKTELIHRRAPWKTRESVELATLE-WVAWYN 250 Query: 10668 EKRSKISLGALSPIE 10624 R LG + P E Sbjct: 251 HHRLMEPLGYIPPAE 265 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 33.9 bits (76), Expect = 0.40 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 5/102 (4%) Frame = -1 Query: 10896 HACNPARHYRWPGWLTRIREANLIRSMSCKGCSPHNAACEGFLGRLKTELFYSRD*QTIT 10717 H + Y + R++EA L+ S G S NA E G K E+ + + + Sbjct: 192 HHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRA 251 Query: 10716 TDLFIEVVD-SYIRWYNEKRSKISLGALSPIE----YRESLG 10606 +E+ +++ WYN +R LG P E Y S+G Sbjct: 252 E---VELATLTWVDWYNNRRLLGRLGHTPPAEAEKAYYASIG 290 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,983,053 Number of Sequences: 14420 Number of extensions: 1074520 Number of successful extensions: 3825 Number of sequences better than 0.5: 30 Number of HSP's better than 0.5 without gapping: 2700 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3796 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 5656630154 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig292 (15,564 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_758929.1|ORF37 44 7e-04 ref|NP_945090.1|gp59 37 0.047 ref|NP_064745.1|gp7 35 0.31 >ref|NP_758929.1|ORF37 Length = 303 Score = 43.5 bits (101), Expect = 7e-04 Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 6/162 (3%) Frame = +2 Query: 92 RELGIPTVTDRXXXXXXXXXXXXXXDPGFSEHSYGFRPGRRAHDAVLAAQSYV------Q 253 R + P DR D + SY R G RA L Y + Sbjct: 72 RLISAPHFKDRVVHRAIYNVIEPLFDKTYIYDSYACRRGERAPTKALTGLQYFIKKVESK 131 Query: 254 SGRRIVVDVDLEKFFDRVNHDILIDRLQKRIGDASVIWLIRAYLNSGIMDGGVVQQREQG 433 G+ + D+ ++F ++H +L L+ +I + L+ I+D + G Sbjct: 132 HGKAYALKADISRYFSSIDHQVLKSILEAKIQCQRTLDLLFY-----IIDNSPCESMGVG 186 Query: 434 TPQGGPLSPLLANVLLDEVDKELERRGHCFARYADDANVYVR 559 P G S + ANV L E+D+ +A++A A Y+R Sbjct: 187 IPLGNLTSQIFANVYLHELDR--------YAKHALGAKHYIR 220 >ref|NP_945090.1|gp59 Length = 429 Score = 37.4 bits (85), Expect = 0.047 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 13/145 (8%) Frame = +1 Query: 4276 KLVVLLSLGFFFELYDLLYSGYVAPGLVKSGILSATTHGL-----FGTTGVASFIAALFS 4440 + V+ + +G FE +D + + + + K +T L T GV F+ Sbjct: 21 RAVIAVIVGNGFEWFDFISYSFFSVIIAKL-FFPSTDDNLSLLLSVSTIGVGFFMRP--- 76 Query: 4441 GLFIGTIACGFLADRFGRRAIFTWSLLWYTAANVVMAF----QDTATGLNFW----RFVV 4596 IG I G +AD+ GRRA T ++ TA ++ F +D G R + Sbjct: 77 ---IGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQ 133 Query: 4597 GLGLGVEMVTIGTYISELVPKQIRG 4671 G G EM Y+ E VP + G Sbjct: 134 GFSAGGEMGGATAYLRERVPAERHG 158 >ref|NP_064745.1|gp7 Length = 540 Score = 34.7 bits (78), Expect = 0.31 Identities = 46/187 (24%), Positives = 64/187 (34%) Frame = -2 Query: 11288 ACSTIATARPISATSAPGREKSPSANALVFAFATTIPALRSPSIVTNSPIDAPSPSLICT 11109 A ATA SAT+A E + SA+A A + T A + T++ A S T Sbjct: 107 AAGLSATAAATSATNAGASETAASASATASATSATNSATSASQAATSASAAAVSEGNAAT 166 Query: 11108 GISRTTTPRAPRIVSRKNSTPDTHAMPRPVCQPTCSVVASVTPMITEPPIPGPTRNGRFA 10929 S T + S ST T A V + AS Sbjct: 167 --SETNAANSATSASGSASTATTQASAASVSATNAATSAS-------------------- 204 Query: 10928 *SPISVVNSTNTTIVAVVAAPRSMPPVASSDGITTSRYAAARNDVTPAIVSVRTLVPRAA 10749 + ++TN AA AS +TTS AA ++ A S T +A Sbjct: 205 ---NAATSATNAAASQAAAATSETNAAASESTVTTSATNAATSEAN-AATSASTATTQAT 260 Query: 10748 SAKRRSS 10728 +A +S Sbjct: 261 NAATSAS 267 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,754,686 Number of Sequences: 14420 Number of extensions: 1014671 Number of successful extensions: 3955 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 2865 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3938 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 7426010979 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig293 (19,540 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542287.1|unknown 38 0.045 ref|NP_665928.1|unknown 35 0.38 >ref|NP_542287.1|unknown Length = 224 Score = 37.7 bits (86), Expect = 0.045 Identities = 28/73 (38%), Positives = 38/73 (52%) Frame = -3 Query: 7058 ASRDAARRLPDADFVSEGSRHDARSEKPLHVHQLSVRTRPAERIRQPEELLSDPRRIPRL 6879 A R + RRLP ++ S+H ARS++ + S+ T P RI P DP R+ L Sbjct: 82 AQRSSKRRLPS---IAAWSKHSARSQRARSLPSKSLATAPQHRI--PLARTRDPIRL--L 134 Query: 6878 PELGGRRIRRSRP 6840 P L G RR+RP Sbjct: 135 PALMGACGRRARP 147 >ref|NP_665928.1|unknown Length = 99 Score = 34.7 bits (78), Expect = 0.38 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 5/105 (4%) Frame = -2 Query: 15279 TATTPHASTCVRSKPGTARSLARSMRWPARRTRGSARCRSPTRRPATRWCARRTPHGPGR 15100 T P + T R+ AR +R P R R S RS T +RRTP R Sbjct: 3 TVARPRSPTATRAATAKARRASR----PTGRLRPSGCSRSRT-------ASRRTPRISRR 51 Query: 15099 WNNGSRCICNSWTPHA-----RRPTRSHSNMRTRTAACNVQPTAN 14980 W R +SWT A R T+S + ++R + + T N Sbjct: 52 WRR-HRATASSWTTTAKLAPRRTLTKSRTTAKSRRRSSGCRSTDN 95 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,732,701 Number of Sequences: 14420 Number of extensions: 1128807 Number of successful extensions: 4766 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 3217 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4747 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 9175736922 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig294 (16,948 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046877.1|putative non-heme haloperoxidase 45 2e-04 ref|NP_817650.1|gp61 40 0.008 ref|NP_944342.1|gp33 37 0.087 ref|NP_958267.1|hypothetical protein 35 0.19 ref|NP_064745.1|gp7 34 0.43 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 45.4 bits (106), Expect = 2e-04 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 1/101 (0%) Frame = -1 Query: 9376 GETIVLLAGFPESWYAWRRVMPLLADE-FRIVAPDLPGQGDSDRPLVGYDTQTVAATLAR 9200 G +V L G S A+ ++ LA+ FR++A D G S G+ + + + Sbjct: 22 GAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTGHTVEDMTRVTLK 81 Query: 9199 LLERQNIARFYLAAHDVGAWVAYPFAAMYPESVKRLALLDA 9077 L+ +I R A H +G + AA +P V LLDA Sbjct: 82 TLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDA 122 >ref|NP_817650.1|gp61 Length = 274 Score = 40.0 bits (92), Expect = 0.008 Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 1/115 (0%) Frame = -1 Query: 9418 DGVRLHFVEGGRADGETIVLLAGFPESWYAWRRVMPLLADE-FRIVAPDLPGQGDSDRPL 9242 DG R+ + G G +V L G S A+ ++ LA F + A D G +D Sbjct: 12 DGFRVGVSQVGT--GVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLP 69 Query: 9241 VGYDTQTVAATLARLLERQNIARFYLAAHDVGAWVAYPFAAMYPESVKRLALLDA 9077 G+ + + R L+ I + H +G + A YPE V LLDA Sbjct: 70 FGHTVEEMTRVTLRALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILLDA 124 >ref|NP_944342.1|gp33 Length = 472 Score = 36.6 bits (83), Expect = 0.087 Identities = 80/328 (24%), Positives = 98/328 (29%), Gaps = 5/328 (1%) Frame = +3 Query: 2082 IGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRLASVQQNFGQGTINSTKSS 2261 + NN A K + N T V +G G + V +N Q T + Sbjct: 187 VTNNTTGAFAATIKTAAGTGIAIPQNGAPTPV---VGDGANIVQVGENIAQATRLTQGVR 243 Query: 2262 LDVAIN-GNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRNLMGYAAGAGGMINTAQT 2438 LD GF + +S+G TT N + G G AG GG Sbjct: 244 LDQLYGTAKGFLRATSSGSTTVP--------PNVTTIYVSGN---GGGAGGGGCATVG-- 290 Query: 2439 VPLQAPTSNIAPRATSKITGQFN-LNAQDKVPAKTPFNATDNTTYNYNSSIQVYDTLGGS 2615 T NI A GQF A VP +T TY T+GG+ Sbjct: 291 ------TPNIMSGAGGGGAGQFTEWQALTVVPGET-------LTY----------TIGGA 327 Query: 2616 QQVTMYFAKNAAGTWQAYAGVQGQTPTNLGTVTFDASGRLSSTTSAATGQPTPSLGQFAF 2795 G G G T T+T SG L S T G P A+ Sbjct: 328 GN---------GGAPNVPGGAGGNT-----TITGSVSGLLLSLTGGVGGSPGVGGAYSAY 373 Query: 2796 SIPNTTG-GANPQNLTLDLG--GTTQYGGKDGVNNLAQDGFASGTLTTFSIGTDGKLTGN 2966 + G GA D G G GG G N G A + G Sbjct: 374 TAGGNGGAGAPAGGYGQDTGPQGVGASGGAGGSNPFGGGGTAVRGSQIGNTMLAGLAATG 433 Query: 2967 YSNGQSAVLGLIALANFNNPNGLVNIGG 3050 Y G G+ A N P N GG Sbjct: 434 YGCGGGGCGGVYAAGNTTIPTSTGNSGG 461 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 35.4 bits (80), Expect = 0.19 Identities = 45/145 (31%), Positives = 56/145 (38%), Gaps = 11/145 (7%) Frame = +2 Query: 2654 HVASLRGRAGPDADESRHRHVRCIGPAQLDDVGRDRPADAKPRPVRVLDPEHDGRR--QS 2827 + +LR RA P+ D H H+R P R R P RV P D RR + Sbjct: 112 YAPALRPRA-PECDRGAH-HLRTRAPRT-----RTRAVPLGPG-ARVRTPVEDRRRTRRR 163 Query: 2828 AEPDARPRRHDAV-----RRQGRREQSRAGRIRERHADDVLDRHRR----QADRQLFERP 2980 PD R R + RR+G R R R+R R R RR + R + R Sbjct: 164 RRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRR 223 Query: 2981 ERGARPDRAGELQQPERAREHRRQP 3055 G R R L+ R R HR P Sbjct: 224 RTGRRHRRRASLR--PRHRRHRSTP 246 >ref|NP_064745.1|gp7 Length = 540 Score = 34.3 bits (77), Expect = 0.43 Identities = 44/208 (21%), Positives = 77/208 (37%), Gaps = 7/208 (3%) Frame = +3 Query: 2238 TINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRNLMGYAAGAGG 2417 T N+ ++ LD +NGN G T +GT + + D + A A Sbjct: 41 TPNAMQADLD--LNGNNLI-----GATGLLINGTDY------LADVEAAKAAALVAQAAA 87 Query: 2418 MI--NTAQTVPLQAPTSNIAP--RATSKITGQFNLNAQDKVPAKTPFNATDNTTYNYNSS 2585 + N A+T + A S A AT+ T N A + + + + + T + S+ Sbjct: 88 ELAENNAETAEVNAEASETAAGLSATAAATSATNAGASETAASASATASATSATNSATSA 147 Query: 2586 IQVYDTLGG---SQQVTMYFAKNAAGTWQAYAGVQGQTPTNLGTVTFDASGRLSSTTSAA 2756 Q + S+ NAA + + +G T + A+ +S ++AA Sbjct: 148 SQAATSASAAAVSEGNAATSETNAANSATSASGSASTATTQASAASVSATNAATSASNAA 207 Query: 2757 TGQPTPSLGQFAFSIPNTTGGANPQNLT 2840 T + Q A + T A+ +T Sbjct: 208 TSATNAAASQAAAATSETNAAASESTVT 235 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,202,252 Number of Sequences: 14420 Number of extensions: 1394167 Number of successful extensions: 5019 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 3465 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5010 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 8018705059 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig295 (21,368 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 201 3e-51 ref|NP_945089.1|gp58 69 3e-11 >ref|NP_945090.1|gp59 Length = 429 Score = 201 bits (510), Expect = 3e-51 Identities = 125/388 (32%), Positives = 186/388 (47%), Gaps = 1/388 (0%) Frame = +3 Query: 15333 APERTAKHYLLAGWASMAGTTIEWYDFFLYGTAAALVFNRIFFPSLDPVVGTLAAFGTFA 15512 AP ++ + A A + G EW+DF Y + ++ ++FFPS D + L + T Sbjct: 11 APSASSDTHRRAVIAVIVGNGFEWFDFISYSFFSVIIA-KLFFPSTDDNLSLLLSVSTIG 69 Query: 15513 VGFIGRPMGGIVFGHFGDRIGRKSMLMITLLLMGVPSMIIGLIPSYDSIGYWAAALLIAM 15692 VGF RP+GGIV G D++GR++ L +T+ LM + +IG P+Y G A +++ Sbjct: 70 VGFFMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVA 129 Query: 15693 RFLQGMAVGGEWGGAVLMAVEHAPKGRKGLFGSLPQTGVGLGLI-XXXXXXXXXXXXPEA 15869 R LQG + GGE GGA E P R G + S Q +G +I E Sbjct: 130 RLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQ 189 Query: 15870 DMLSWGWRVPFLASIALVGLGWFIRAKVPESPDFEKIQRQGKAEKSPVTAALRRHPREVL 16049 + SWGWR+PFL + L +G +IR+++ P F +R G E +PV +R RE L Sbjct: 190 QIESWGWRIPFLLGLGLGPVGIYIRSRL-NDPGFPADERLG--ECAPVVEVVRSFSREAL 246 Query: 16050 TIVGARAAENTWFYMVVTFALAYATQQLHLPKAEMLHAITAGAALSLVTMPLCGHLSDRI 16229 G Y+++ + YA++ L LP + A+ GA++ L PL GHLSD Sbjct: 247 VGFGLVVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLF 306 Query: 16230 GQRRMFAIGLVLMCAFAAPFFMMLGTQQTSTAWWAIVLGLGVVFPILYAPESLLFAQQFP 16409 G+R A L++ A P F ML + G+V P + FP Sbjct: 307 GRRWFLAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFP 366 Query: 16410 AEIRYSGISLSVQLAGVIGGGFAPMIAT 16493 + +GIS+S LA + GGF+ I T Sbjct: 367 DGVLSTGISISYNLAVITFGGFSAAIIT 394 >ref|NP_945089.1|gp58 Length = 297 Score = 68.6 bits (166), Expect = 3e-11 Identities = 67/299 (22%), Positives = 119/299 (39%), Gaps = 8/299 (2%) Frame = -2 Query: 11533 LNDLYYFVKVVEHGGFTQAGRALDVPKSTLSRRIAALEARYDVRLLQRTTRHFTVTETGR 11354 L L +F HG FT+A L+V + +S+++ LE L R + +T G+ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 11353 EFYERCLAVLVEADAAREVIERRHAEPRGIVRVSCPTALLEFRVSELVARFMAIHPQVHV 11174 ++ +R A+L + A ++ + P + ++C + +++ +A F A HP+V V Sbjct: 69 QYADRVHAILADCVEATALVMKEQT-PHSLT-IACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 11173 HLEATNRRVDLLSEGFDLAL-RVRFPPLEDSDLVMRVLADSPQRLVAAPQWLDGRTAPSD 10997 + +L + FD+ + +R P + + AP +L GR P Sbjct: 127 RILVREGVFNLNAAEFDIGVYYIRDVP--PPGIAGTAIVAEDVHAYCAPTFLAGRRVP-- 182 Query: 10996 PAELIGVPSL-------DWGPARHHVWQLVGPNGEHAQLRHHPRFVTDDMHALRDAAIHG 10838 P +L+ L W R VG G R + L A+HG Sbjct: 183 PQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIG----FRPARTISANSYPVLLQLALHG 238 Query: 10837 VGIVQLPCMVVEDDLRDGTLVDVLPGWAPKGGVVHAVFPSRRGLLPRVRLLIDFLAEHI 10661 G + ++ + G LV A GG ++P+ R P V + ++L H+ Sbjct: 239 HGAILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLLTHV 297 Score = 54.3 bits (129), Expect = 5e-07 Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 2/170 (1%) Frame = -3 Query: 15078 LRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLTAEGQRL 14899 L FF AR + AA+ L V V++++ LE +GT LF + LT GQ+ Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKA-LHLTRAGQQ- 69 Query: 14898 VAYADAMETTVQSACDQVANTGEALSGH-VRIGSTEGFGCFFLAPQLARFRAAHPHVTVD 14722 YAD + + + A + + H + I G FLA ++A F A HP V+V Sbjct: 70 --YADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVR 127 Query: 14721 LLPVPHFVNLPKREADLAITLERPERGPYVV-TKLCDYQLRLYATHDYLA 14575 +L NL E D+ + R P + T + + Y +LA Sbjct: 128 ILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLA 177 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,466,476 Number of Sequences: 14420 Number of extensions: 1471744 Number of successful extensions: 5498 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 3551 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5480 length of database: 3,019,461 effective HSP length: 111 effective length of database: 1,418,841 effective search space used: 9947494251 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig296 (17,420 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061549.1|Orf53 40 0.006 ref|NP_064745.1|gp7 38 0.040 ref|NP_542296.1|unknown 37 0.068 ref|NP_892081.1|relication protein RepA 35 0.34 ref|YP_006601.1|Gp21 35 0.34 ref|NP_059633.1|head completion protein 34 0.44 ref|NP_040602.1|Tail fiber protein 34 0.44 >ref|NP_061549.1|Orf53 Length = 354 Score = 40.4 bits (93), Expect = 0.006 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 6/110 (5%) Frame = -3 Query: 5109 RRAAADERGGHQQHREIRRGRHQQQPREREAHADRQRIRLRMLVG------IEAHERLQQ 4948 R AA ER ++ + R ++ E +A A+R+ + LR+ +EA +R +Q Sbjct: 214 REAAEAERLAAERRAQEERDATARREAEAKAAAERRELELRLAAEKAEREKLEAQQRAEQ 273 Query: 4947 RRGDLVSERDQADLRERQRELALEHRIDREDQRLDHVVEHVREADRAEHR 4798 D ++A ERQR+ + RI+RE RE+D+A + Sbjct: 274 AERDAQRRAEEATAAERQRQADEQARIERE--------AAARESDKAHKK 315 >ref|NP_064745.1|gp7 Length = 540 Score = 37.7 bits (86), Expect = 0.040 Identities = 43/185 (23%), Positives = 76/185 (41%) Frame = +3 Query: 13248 TDRLNAARARSGAPALTSRPPLQRASAGFTETTPGMPPASSFFVLTSQPLPSPNGTFASA 13427 T N+A + S A S + +A +ET + S +G+ ++A Sbjct: 138 TSATNSATSASQAATSASAAAVSEGNAATSETN------------AANSATSASGSASTA 185 Query: 13428 LFTSAGAACCVPGSRSRSDADTR*TSAPDFASTKRSVST*RYTRPMNGSANGAGPSTVTH 13607 T+ +A V + + + A TSA + A+++ + +T + + A STVT Sbjct: 186 --TTQASAASVSATNAATSASNAATSATNAAASQAAAAT-------SETNAAASESTVTT 236 Query: 13608 ALLAAPHRSALAATAAGCVAYAIDNR*RASLSGCASKPRRASSSRTSVSICRYSASSACA 13787 + A A AAT+A N ++ + S A+S + S +ASSA + Sbjct: 237 SATNAATSEANAATSASTATTQATNAATSASTASTSATNAATSETNAASSASSAASSATS 296 Query: 13788 AVRAK 13802 A +K Sbjct: 297 AQASK 301 >ref|NP_542296.1|unknown Length = 111 Score = 37.0 bits (84), Expect = 0.068 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 5/110 (4%) Frame = +1 Query: 6880 LNFTCAFASVPLPSSAVTVPSPNLVWNTCWPTRKPVSAARCLFANAGSGADTAASTICSR 7059 L+ C+ ASVP A+T T P +P+ RC A A++ CS Sbjct: 19 LSPACSLASVPTRPGALTT--------TTLPAFRPIGPRRCR-------ARRASAITCST 63 Query: 7060 LPPPGRANQSRP*PALSERP-PQRDPASTFGV----SHFSTCSGSSSKKR 7194 +P PGR P RP PA++ G SH + CS S +++ Sbjct: 64 IPSPGR-------PGPRRRPRHSASPATSRGAARPKSHLTPCSAVSRRRQ 106 >ref|NP_892081.1|relication protein RepA Length = 1330 Score = 34.7 bits (78), Expect = 0.34 Identities = 35/128 (27%), Positives = 59/128 (46%) Frame = -1 Query: 9425 LMLEICRKMRELDAESDNYKWMPIGQPSPCRRGPVGTRPQRVRNPLATCRQRATERIGNG 9246 L+L IC ++++L A+ D +K I + RR Q+ +N A + +ERI N Sbjct: 457 LILLICAELKKLGAD-DAFKNTVISRVK--RRFE-----QKCQN--AQAFRSFSERITNA 506 Query: 9245 IARPTYNVGSAFFSPVSRRSMPDLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITR 9066 RP + F +P + PE LA + P ++ AG GSGK++ L+ Sbjct: 507 ALRPDHITYKRFNTP-----------QITPEVLAYIKSLRGPVIVRAGMGSGKSKHLLRP 555 Query: 9065 IAWLIQQG 9042 + ++G Sbjct: 556 LMHAAERG 563 >ref|YP_006601.1|Gp21 Length = 3433 Score = 34.7 bits (78), Expect = 0.34 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Frame = -3 Query: 3003 VAGEVRLLAQRSATAAKEIRELIGASVERVANGAAL-AHDAGRTMGDVVRAV-KRVTDII 2830 VA +V + Q +A EIR+ + +E V + +T+ D + AV K +TD + Sbjct: 857 VAQQVTDINQSIDDSASEIRQQVDGQIESVNKSITENINSVNQTLSDNITAVNKSITDAV 916 Query: 2829 GEISAASDEQSAGIDEIGRAVTQMDA 2752 +I+ + D+Q I ++ + +T+ DA Sbjct: 917 SDINTSVDQQ---IADVNKTLTEGDA 939 >ref|NP_059633.1|head completion protein Length = 472 Score = 34.3 bits (77), Expect = 0.44 Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 24/154 (15%) Frame = +1 Query: 10069 VATTRPETMLGD-VALMVHPEDER-YVHLIGKLVTLPLTGREIPVIADDYVDREFGTGVV 10242 +A T +T D A + HP V++IG P+ I I Y E TGV+ Sbjct: 234 IAGTYCKTPFADSYAFISHPATGAPSVYIIGSGQASPIATASIEKIIRSYTAEEMATGVM 293 Query: 10243 KVTPAHDFNDYQVGLRHKLAPIEILTLDAKINDNGP-----------EQYRGLDRF---- 10377 + F+ +++ + H P +L DA + NGP + YRG+D Sbjct: 294 ETL---RFDSHELLIIH--LPRHVLVYDASSSQNGPQWCVLKTGLYDDVYRGVDFMYEGN 348 Query: 10378 -----DARKAIVADL--DAQGFLDSVKPHKLMVP 10458 D +A+V L D D + H L P Sbjct: 349 QITCGDKSEAVVGQLQFDISSQYDKQQEHLLFTP 382 >ref|NP_040602.1|Tail fiber protein Length = 401 Score = 34.3 bits (77), Expect = 0.44 Identities = 44/166 (26%), Positives = 62/166 (37%), Gaps = 2/166 (1%) Frame = +3 Query: 13419 ASALFTSAG--AACCVPGSRSRSDADTR*TSAPDFASTKRSVST*RYTRPMNGSANGAGP 13592 A A TSAG A+ S A + T A A+ S N +A AG Sbjct: 152 ARAASTSAGQAASSAQEASSGAEAASAKATEAEKSAAAAESSK--------NAAATSAGA 203 Query: 13593 STVTHALLAAPHRSALAATAAGCVAYAIDNR*RASLSGCASKPRRASSSRTSVSICRYSA 13772 + + AA +SA AT+A A ++ ASK SS + S +A Sbjct: 204 AKTSETNAAASQQSA--ATSASTAATKASEAATSARDAVASKEAAKSSETNASSSAGRAA 261 Query: 13773 SSACAAVRAKS*PCAPDANAFGCPTALTPLVTPAQPVNSDAASAVA 13910 SSA AA + + NA TA + A + AA + + Sbjct: 262 SSATAAENSARAAKTSETNARSSETAAERSASAAADAKTAAAGSAS 307 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,970,319 Number of Sequences: 14420 Number of extensions: 1050809 Number of successful extensions: 4370 Number of sequences better than 0.5: 7 Number of HSP's better than 0.5 without gapping: 3136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4366 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 8247438657 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig297 (18,771 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_195193.1|hypothetical protein 82 2e-15 ref|NP_665964.1|putative plasmid partitioning protein Soj 37 0.073 ref|NP_690686.1|structural protein 35 0.36 >ref|YP_195193.1|hypothetical protein Length = 120 Score = 82.4 bits (202), Expect = 2e-15 Identities = 41/80 (51%), Positives = 51/80 (63%) Frame = -1 Query: 993 GRDFHGRRTANGERFNMNAFTAAHRTLPLSSYIKVTNASTGKWVVVKVNDRGPFKRGRVL 814 G +HG+RTANGER+N + AHR LP + ++VTN TGK V+V+VNDRGP+ R L Sbjct: 36 GDGYHGQRTANGERYNAYGKSVAHRYLPFGTRLRVTNQRTGKSVIVRVNDRGPYVYDRDL 95 Query: 813 DLSYAAAKVIGLVHAGTGRV 754 DLSY A I G RV Sbjct: 96 DLSYGAFSTIAPPSQGVARV 115 >ref|NP_665964.1|putative plasmid partitioning protein Soj Length = 256 Score = 37.0 bits (84), Expect = 0.073 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = -3 Query: 17833 VAVTGGPAGVGCTSTVVNLAAALASLGKDVLVVD 17732 + VT G G T+T +N+A AL LG DVLV+D Sbjct: 3 IGVTNQKGGAGKTTTTLNVAGALNQLGNDVLVID 36 >ref|NP_690686.1|structural protein Length = 369 Score = 34.7 bits (78), Expect = 0.36 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Frame = +1 Query: 7645 VFASASLACAGMI-GALLLPYPAAVLTGFTLMGLGLANMMPVLFAAAARVKGIHAAEGLA 7821 + S S G + GAL+ +PAAV +L+G+ + ++ P+L AA G+ +A A Sbjct: 56 ITGSLSTVIGGALRGALMSAFPAAVPAAASLVGV-VGSLGPMLGVAAGGAAGLGSAFATA 114 Query: 7822 HVAGLAYFGLLFGPVAIGAVAQAS 7893 +AY L +IG V +AS Sbjct: 115 GAGAVAYGAL--AATSIGGVIKAS 136 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,910,468 Number of Sequences: 14420 Number of extensions: 1236867 Number of successful extensions: 4476 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 3182 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4473 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 8808822106 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig298 (19,370 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 74 7e-13 ref|NP_046877.1|putative non-heme haloperoxidase 52 3e-06 ref|NP_817650.1|gp61 43 0.001 >ref|NP_046572.1|ABC transporter Length = 705 Score = 73.6 bits (179), Expect = 7e-13 Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 5/184 (2%) Frame = +3 Query: 15471 LRDVTLDVRRGEVFGIIGRSGAGKSTLLRLLNGLERPSSGRVRVQGVDVGALDEDGLVAL 15650 + D+ L + R + IIG SG GKST + L+ L + + + G+D+ D +++ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDH---LSI 555 Query: 15651 RRRTGMVFQHFNLLSAKTVFENVALPLKIAGVPKAERVRKXXXXXXXXXXXXKRDAYPAS 15830 R+R + ++ L T+ EN+ + +I + E K+ +Y S Sbjct: 556 RKRIVYIDENPFLFKG-TIKENLCMG-EIFDQNEIENACIMSQCHEFICNLDKQYSYKLS 613 Query: 15831 -----LSGGQKQRVGIARALVHDPEVLLCDEATSALDPETTQSILALLADINRRLGLTIV 15995 LS GQKQR+ +ARA++H P+VL+ DE+ S +DP+ T+ I L R+ I+ Sbjct: 614 ENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETL----HRMDCLII 669 Query: 15996 LITH 16007 LITH Sbjct: 670 LITH 673 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 51.6 bits (122), Expect = 3e-06 Identities = 52/219 (23%), Positives = 85/219 (38%), Gaps = 16/219 (7%) Frame = -2 Query: 5071 LSSGISLPYVERGSGAPMVFVHGSLCDYRYWDPQLAALSAH-YRCIAPSLSHYWPAVEAG 4895 L+ G + G+GAP+VF+HG + ++ L L+ H +R IA +++ + Sbjct: 8 LADGFRVGVSTVGTGAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRS--GS 65 Query: 4894 IQDEFSWQNHVDELAEFIDALDLGPVHLVGHSRGGSVAFNVARQHPHLVESLTLAD-PGG 4718 + + ++ + +D LD+ GHS GG + +A +HPH V + L D G Sbjct: 66 LPTGHTVEDMTRVTLKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDAAAG 125 Query: 4717 PLQQPGVREXXXXXXXXXLRTK--------------AVNLIDQGDVEAGLEMFVDSVSLP 4580 ++ K A++L D G+ + L M DSVS Sbjct: 126 QEHHDNIKVGHYATLAFRAAKKLGEAVTDIVGDGYEAMHLRDTGEKLSFLGMLRDSVS-- 183 Query: 4579 GAWKKSTARFRTMAIDNASTLPKQLRDPLPAYSQHTAGD 4463 + A F M D L R +P H D Sbjct: 184 -GLRFVRAAFALMKADTTPLLHAMYRHGVPTAVLHGLHD 221 >ref|NP_817650.1|gp61 Length = 274 Score = 42.7 bits (99), Expect = 0.001 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 4/119 (3%) Frame = -2 Query: 5071 LSSGISLPYVERGSGAPMVFVHGSLCDYRYWDPQLAALSAHYRCIAPSLSHYWPAVEAGI 4892 L G + + G+G P+VF+HG ++ L L+ + AV G Sbjct: 10 LDDGFRVGVSQVGTGVPLVFLHGLTVSALAYEELLIELAQRGFAVTAL-----DAVNHGR 64 Query: 4891 QDEFSWQNHVDELAEF----IDALDLGPVHLVGHSRGGSVAFNVARQHPHLVESLTLAD 4727 D + + V+E+ +DAL + VGHS GG + +A ++P V + L D Sbjct: 65 TDSLPFGHTVEEMTRVTLRALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILLD 123 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,504,789 Number of Sequences: 14420 Number of extensions: 1253829 Number of successful extensions: 4795 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 3331 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4790 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 9095474306 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig299 (20,438 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_899299.1|conserved hypothetical protein 80 1e-14 ref|NP_945089.1|gp58 57 7e-08 >ref|NP_899299.1|conserved hypothetical protein Length = 242 Score = 79.7 bits (195), Expect = 1e-14 Identities = 70/259 (27%), Positives = 113/259 (43%), Gaps = 5/259 (1%) Frame = -1 Query: 4472 VKVRVLSDLHLENNLPDAIPHADAD---LVVLAGDIHNHAEGLRWAAETFDPAVPVVYVP 4302 +KV SD+H + + +A+ D ++V+AGDI++ +R D V+ VP Sbjct: 4 LKVYYCSDIHNDYHDENALERITGDKDAVLVVAGDINSKGRTVRDLEAVADRWRAVIAVP 63 Query: 4301 GNHEYYDGEFGALETAMRDAAHALDNVHYL-NNGVYVDPAQRFRVLGTTLWADFSLFGRD 4125 GNH+++ G ++DNVH L + V +D GTTLW + + + Sbjct: 64 GNHDWW----GLAIHERHKFETSVDNVHVLLEDTVQIDDVT---FCGTTLWHEVNDW--- 113 Query: 4124 EASVARAIDAALRVMLDFKGLIQVTWPHDAALHTAAGAPE-RDFAPADAIALHLQGRAWL 3948 F+G W + P+ R D ALH Q ++ Sbjct: 114 -----------------FEGQ---RWKENMNDRRKIRGPQWRPLYGEDVHALHCQSVKFI 153 Query: 3947 ETQLAAPFAGKTIVVTHHAPHRRSLAERYAEDLASAGFVTDMAELVRPPVDLWLHGHTHT 3768 E GK +++THHAP +S++ YA ++ + TD+ L+ + +HGH H Sbjct: 154 EK--CREIEGKKVLITHHAPSLKSISSYYAYSSTNSFYCTDLEHLLE-GFNFAIHGHVHQ 210 Query: 3767 SFDYVADGGTRVVCNPRGY 3711 FDY + V+CNPR Y Sbjct: 211 EFDYHVN-DCNVLCNPRAY 228 >ref|NP_945089.1|gp58 Length = 297 Score = 57.0 bits (136), Expect = 7e-08 Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 1/189 (0%) Frame = +2 Query: 2381 LQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHXXXXXXXXXXXXXXXXEAGE 2560 LQ + F G+FT AA+++N S+ V LE AG+ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 2561 RYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRERYPDVHV 2740 +Y R ILA D EA A + L + C + +L IA + +P+V V Sbjct: 69 QYADRVHAILA--DCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 2741 ELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRL-GESYSVVCASPGYVESHGVPQRP 2917 + + + + +L +D+ + RD+P G+ + E CA P ++ VP P Sbjct: 127 RILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCA-PTFLAGRRVP--P 183 Query: 2918 ADLAQHVCL 2944 DL + L Sbjct: 184 QDLMEATLL 192 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,106,736 Number of Sequences: 14420 Number of extensions: 1416069 Number of successful extensions: 5397 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 3570 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5392 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 9605715222 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig300 (23,130 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_665928.1|unknown 37 0.068 ref|NP_958267.1|hypothetical protein 37 0.068 ref|YP_024827.1|Pas41 36 0.20 >ref|NP_665928.1|unknown Length = 99 Score = 37.4 bits (85), Expect = 0.068 Identities = 38/116 (32%), Positives = 50/116 (43%), Gaps = 5/116 (4%) Frame = +2 Query: 10808 ARPRSCVKARACATIRMRSPSRSARCSGTRPTGRCRPARCSSGARPRRAAMWRWSARGRP 10987 ARPRS RA AT + R SR PTGR RP+ CS R R Sbjct: 5 ARPRSPTATRA-ATAKARRASR--------PTGRLRPSGCS---------------RSRT 40 Query: 10988 GSRARTGSRSPGIASRCSTHARRPAASTNTG--SPR---TRPSTISRNAKSSGCCR 11140 SR R+P I+ R H ++ T T +PR T+ T +++ + S CR Sbjct: 41 ASR-----RTPRISRRWRRHRATASSWTTTAKLAPRRTLTKSRTTAKSRRRSSGCR 91 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 37.4 bits (85), Expect = 0.068 Identities = 54/182 (29%), Positives = 61/182 (33%), Gaps = 11/182 (6%) Frame = -3 Query: 21382 LGRAR---PDPTEPARP-RRGLAVPLRDLPDHRAAARGRDRVHRPARQRACVSGARRYAC 21215 LG AR PD EP P RR + P H AR R R P A Sbjct: 41 LGPARDRSPDHPEPDHPCRRAPSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAP 100 Query: 21214 XXXXXXXXXXXXXSELPRAASRC--AVHRVQRPAEGRRAEAVLPGAVPYRPGAVARSALV 21041 L A C H ++ A R AV P PGA R+ + Sbjct: 101 GCAPAAPAAPEYAPALRPRAPECDRGAHHLRTRAPRTRTRAV-----PLGPGARVRTPVE 155 Query: 21040 SRWRASARRMATYRPPPSRAT-----AATHRRRPLCATSTNRRTRCRGKPASHPPGSATS 20876 R R RR RP P R HRRR A RR R R +P PG+A Sbjct: 156 DRRRTRRRR----RPDPRRRVQPRLGVGVHRRRG--ARRVGRRVRVRARPG---PGAARR 206 Query: 20875 RR 20870 R Sbjct: 207 PR 208 Score = 35.0 bits (79), Expect = 0.34 Identities = 38/116 (32%), Positives = 41/116 (35%), Gaps = 8/116 (6%) Frame = -2 Query: 5342 DRRAERRVEPAHDLRVQRFARAAHRAQPALHARGRFRPGRHQHPECG-RRTREARDAEPV 5166 D R RR P H R RA P H R R RP HP G R R EP Sbjct: 4 DARRLRRARPPHT----RTPAPRTRAHPRAHRRVRTRP----HPHLGPARDRSPDHPEPD 55 Query: 5165 DHVVRAVDREAALVQRRRMTEQQRARDRVIE-------PVRPARIGDVPEPVAGTQ 5019 RA R AA +R + R R R E V PA G P A + Sbjct: 56 HPCRRAPSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPE 111 >ref|YP_024827.1|Pas41 Length = 165 Score = 35.8 bits (81), Expect = 0.20 Identities = 22/51 (43%), Positives = 23/51 (45%) Frame = +2 Query: 10934 GARPRRAAMWRWSARGRPGSRARTGSRSPGIASRCSTHARRPAASTNTGSP 11086 G R R A R GRPG R R G P R ST PA T TG+P Sbjct: 107 GPRRRDRAGRRQRRPGRPGRRGRRGLHPPDRGRRGSTPRPEPARRTPTGTP 157 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,580,790 Number of Sequences: 14420 Number of extensions: 1689949 Number of successful extensions: 6568 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 4199 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6563 length of database: 3,019,461 effective HSP length: 111 effective length of database: 1,418,841 effective search space used: 10780353918 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig301 (23,311 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 49 2e-05 ref|NP_945089.1|gp58 39 0.031 ref|YP_024526.1|hypothetical protein 35 0.45 >ref|NP_046572.1|ABC transporter Length = 705 Score = 48.9 bits (115), Expect = 2e-05 Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 6/156 (3%) Frame = +3 Query: 549 VLDGVDLALAPGETLALLGRNGSGRSTLAKAVMGLVRTAG-SVRIAGAECAGARTFEIAR 725 +++ ++L L + + ++G +G+G+ST AK++ L + S+ + G + I + Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 726 RGVAYVAESRDVFPLLSVRDNLRLGLRGTSGTAERTALDRLFERF-----PLLAARADVK 890 R + Y+ E+ +F ++++NL +G E + F + + Sbjct: 558 R-IVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSEN 615 Query: 891 AGRLSGGEQQVLALVRALAGRPRVLIVDEPAEGLAP 998 LS G++Q LAL RA+ +P+VLI+DE + P Sbjct: 616 GSNLSTGQKQRLALARAILHQPQVLILDESLSNIDP 651 Score = 39.3 bits (90), Expect = 0.018 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = +2 Query: 11042 NFVQQAQLKRDCEE-MSRMLRVKSPGLHEEIQNLSGGNQQKVLIGRWLLTQPRILILDEP 11218 N ++ A + C E + + + S L E NLS G +Q++ + R +L QP++LILDE Sbjct: 586 NEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDES 645 Query: 11219 TRGID 11233 ID Sbjct: 646 LSNID 650 >ref|NP_945089.1|gp58 Length = 297 Score = 38.5 bits (88), Expect = 0.031 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 2/144 (1%) Frame = +1 Query: 19591 AAAGSFTAAAQRLGISKAAMSQRIADLEKAAGVPXXXXXXXXXXXXDAGQTLVDSTRDAF 19770 A G+FT AA+ L +++ A+S+++ LE G AGQ D Sbjct: 19 ARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHAIL 78 Query: 19771 ESIGQHFARVKDLAGEPRGLLRVTVPVALGRQQV--VPHLPDFLRQHPGVQIELDLSDRL 19944 + A V P L T+ A G + + +F +HP V + + + + + Sbjct: 79 ADCVEATALVMK-EQTPHSL---TIACASGTATLFLADRIAEFSAEHPEVSVRILVREGV 134 Query: 19945 HSLTQEGFDLAIRHTTTAPQTHVA 20016 +L FD+ + + P +A Sbjct: 135 FNLNAAEFDIGVYYIRDVPPPGIA 158 >ref|YP_024526.1|hypothetical protein Length = 416 Score = 34.7 bits (78), Expect = 0.45 Identities = 22/71 (30%), Positives = 36/71 (50%) Frame = +1 Query: 14989 MVDHIRQIATIARDEFGVRAVIHPHAGGYIEFADEIDRIVADIPADTAGLCLDTGHLHYS 15168 ++D+ I TI RD FG +++I H G + I++ + D D L TGH+H+ Sbjct: 306 IIDNREDIYTI-RDTFGGKSIIINHGDGLKGKGNHINKFILDSHIDL----LITGHVHHF 360 Query: 15169 GMDPETWLRRH 15201 + E + R H Sbjct: 361 SVKQEDFNRMH 371 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,844,507 Number of Sequences: 14420 Number of extensions: 1511750 Number of successful extensions: 6125 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 3919 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6120 length of database: 3,019,461 effective HSP length: 111 effective length of database: 1,418,841 effective search space used: 10865484378 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig302 (26,259 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_039614.1|gene IV product 82 4e-15 ref|NP_040655.1|unknown protein 81 6e-15 ref|NP_040579.1|G IV protein 80 8e-15 ref|NP_047359.1|maturation protein 75 3e-13 ref|NP_510894.1|phage assembly protein 74 6e-13 ref|NP_945090.1|gp59 74 6e-13 ref|NP_047372.1|putative maturation protein 67 9e-11 ref|NP_064745.1|gp7 45 5e-04 ref|NP_046572.1|ABC transporter 42 0.002 ref|NP_061549.1|Orf53 37 0.13 ref|YP_024843.1|Pas57 35 0.38 >ref|NP_039614.1|gene IV product Length = 428 Score = 81.6 bits (200), Expect = 4e-15 Identities = 62/249 (24%), Positives = 119/249 (47%), Gaps = 11/249 (4%) Frame = +3 Query: 822 QVDVRVVEFSRSVLKQAGLNFFKQ--SNGFAFGAFAPTGLTSITGTPGGSLTYNTSVPIS 995 QV ++ + F SV L+F S G G F + L + T GGS Sbjct: 198 QVLIQSLMFETSVSNGVDLSFALALASGGKVAGGFNTSALGTALSTAGGSF--------- 248 Query: 996 SAFNLVVNSVSRGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVPVPQSLG 1175 FN + ++S L +++++ ++V++ P ++ SGQS G +P + G Sbjct: 249 GIFNGNILALS------LQAVQSDSNSKVISTPRILTQSGQSGYISVGQNVPFVTGKVTG 302 Query: 1176 TIS--------IEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPAL 1331 + IE + GV L VTP V+ ++ L + ++ S++ ++ + Sbjct: 303 EAASVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKAD------SLSNQAIASDII 356 Query: 1332 TTRRA-DTTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKEL 1508 T +R TTV++ DG++ ++GGLI + VPF+ +P+IG F++ S ++D+ + Sbjct: 357 TNQRQIQTTVQIKDGQTLLLGGLISSNQFDSDRSVPFMSKIPLIGWLFRSHSDSKDDRTM 416 Query: 1509 VIIVTPHLV 1535 +++T H++ Sbjct: 417 FVLLTAHVI 425 >ref|NP_040655.1|unknown protein Length = 430 Score = 80.9 bits (198), Expect = 6e-15 Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 1/240 (0%) Frame = +3 Query: 819 VQVDVRVVEFSRSVLKQAGLNFFKQSNGFAFGAFAPTGLTSITGTPGGSLTYNTSVPISS 998 V ++ VVE S K+ GLN+ + G ++ ++ G S+ Sbjct: 188 VAIEANVVEASVDWSKRLGLNW---GGALSLGNWSAVTAGDLSVAAGSSI---------- 234 Query: 999 AFNLVVNSVSR-GLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVPVPQSLG 1175 F + N++S GLF + +E RV+++PTL+ L QSA+ L G E+P G Sbjct: 235 GFGFLSNTLSLDGLF---TAMENEGNGRVVSRPTLLTLDRQSASVLRGTELPYQQSAGDG 291 Query: 1176 TISIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTTRRADTT 1355 S+ +K + L V P + I ++V +F ++I VP + T R TT Sbjct: 292 ATSVAFKHAALSLEVKPVISPDNSIVIEVLVSRDSPNFSNAID----GVPPIDTNRLVTT 347 Query: 1356 VELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVTPHLV 1535 + + G++ V+GG+ ++V + +P IG FK + EL+I +TP ++ Sbjct: 348 IRVPHGQTVVLGGVYSTINQQGSSRVSGISRIPGIGRLFKKKEHVTEQYELLIFLTPRIL 407 >ref|NP_040579.1|G IV protein Length = 437 Score = 80.5 bits (197), Expect = 8e-15 Identities = 61/248 (24%), Positives = 115/248 (46%), Gaps = 10/248 (4%) Frame = +3 Query: 822 QVDVRVVEFSRSVLKQAGLNFF--KQSNGFAFGAFAPTGLTSITGTPGGSLTYNTSVPIS 995 QV ++ + F S++ L+F S G F + L + T GGS Sbjct: 207 QVLIQSLMFETSLVNGVDLSFAAGSASGDKVAGGFNTSALGTALSTAGGSF--------- 257 Query: 996 SAFNLVVNSVSRGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVPVPQSLG 1175 FN V ++S + ++ ++ ++V++ P ++ SGQ+ G +P + G Sbjct: 258 GIFNGNVLALS------IQAVKNDSNSKVISTPRILTQSGQTGYISVGQNVPFVTGKVTG 311 Query: 1176 TIS--------IEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPAL 1331 + IE + GV L VTP V+ ++ L + ++ L +T + + Sbjct: 312 EAANVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSL--TSQMTASDI---IT 366 Query: 1332 TTRRADTTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELV 1511 R TTV++ DG++ ++GGLID TT VP+ +P+IG F++ S N++ + Sbjct: 367 NQRHMQTTVQIKDGQTLLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNERTMF 426 Query: 1512 IIVTPHLV 1535 +++T H++ Sbjct: 427 VLLTAHVI 434 >ref|NP_047359.1|maturation protein Length = 429 Score = 75.5 bits (184), Expect = 3e-13 Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 19/230 (8%) Frame = +3 Query: 903 FAFGAFAPTG-----------LTSITGTPGGSLTYNTSVPISSAFNLVVNSVSRGLFADL 1049 F+F A P+G LTS+ + GGS + N GL L Sbjct: 217 FSFAAGDPSGSPVAGGINTDRLTSVLSSTGGSFG-------------IFNGNILGL--SL 261 Query: 1050 SILEANNLARVLAQPTLVALSGQSANFLAGGEIPVPVPQSLGTIS--------IEWKPYG 1205 LE ++ + +L+ P ++ +SGQ F AG +P + G + IE G Sbjct: 262 KALETSSKSTLLSMPRILTMSGQPGTFTAGQNVPFVTGRVTGEAANVNNPFQTIERHDVG 321 Query: 1206 VGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTTRRADTTVELGDGESFV 1385 + L V P V + + V+ + + S T + + TR TTV+L G++ + Sbjct: 322 ISLKVVPVVTPGGLLIMDVSTNADSIS--DSQTASDI---ITNTRSISTTVQLKSGQTVL 376 Query: 1386 IGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVTPHLV 1535 +GG++D + + + VP++ +P+IGA F + S N + L I++ +V Sbjct: 377 LGGMVDNRESDSDSSVPWVSKIPLIGALFTSKSSNANKRTLYILIRARVV 426 >ref|NP_510894.1|phage assembly protein Length = 426 Score = 74.3 bits (181), Expect = 6e-13 Identities = 59/222 (26%), Positives = 99/222 (44%), Gaps = 10/222 (4%) Frame = +3 Query: 900 GFAFGAFAPTGLTSITGTPGGSLTYNTSVPISSAFNLVVNSVSRGLFADLSILEANNLAR 1079 G G LTS+ + GGS FN V +S + L+ N+ ++ Sbjct: 224 GTVAGGVNTDRLTSVLSSAGGSF---------GIFNGDVLGLS------VRALKTNSHSK 268 Query: 1080 VLAQPTLVALSGQSANFLAGGEIPVPVPQSLGTIS--------IEWKPYGVGLTVTPTVL 1235 +L+ P ++ LSGQ + G +P + G + IE + G+ ++V P + Sbjct: 269 ILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAM 328 Query: 1236 SPRRIALKVAPESSQLDFVHSITINSVQVPALTT--RRADTTVELGDGESFVIGGLIDRE 1409 + I L + ++ L +S Q + T R TTV L DG++ ++GGL D + Sbjct: 329 AGGNIVLDITSKADSLS-------SSTQASDVITNQRSIATTVNLRDGQTLLLGGLTDYK 381 Query: 1410 TTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVTPHLV 1535 TS + VPFL +P+IG F + S + L ++V +V Sbjct: 382 NTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIV 423 >ref|NP_945090.1|gp59 Length = 429 Score = 74.3 bits (181), Expect = 6e-13 Identities = 62/208 (29%), Positives = 93/208 (44%), Gaps = 27/208 (12%) Frame = -3 Query: 17875 RNVTIAAYLGWTLDAFDFFLMVFVLKDIAAEFASTIPAVAFALTLTLA---------MRP 17723 R IA +G + FDF F IA F P+ L+L L+ MRP Sbjct: 20 RRAVIAVIVGNGFEWFDFISYSFFSVIIAKLF---FPSTDDNLSLLLSVSTIGVGFFMRP 76 Query: 17722 LGALIFGRLADRFGRRPTLMVNIACYSLLELASGFAPSL--------TALLVLRALFGIA 17567 +G ++ G +AD+ GRR L V IA + GFAP+ ++V R L G + Sbjct: 77 IGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFS 136 Query: 17566 MGGEWGVGSALTMETVPTHARGFVSGLLQAGYPSGYLLASVVFGLFYQTI--------GW 17411 GGE G +A E VP G+ + +QA +LASV+ + + GW Sbjct: 137 AGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGW 196 Query: 17410 RGMFMVGVLPALLVLYVRAHV--PESPA 17333 R F++G+ + +Y+R+ + P PA Sbjct: 197 RIPFLLGLGLGPVGIYIRSRLNDPGFPA 224 Score = 46.2 bits (108), Expect = 2e-04 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 7/150 (4%) Frame = -3 Query: 17845 WTLDAFD--FFLMVFVLKDIAAEFASTIPAVAFALTLTLAMRPLGALIFGRLADRFGRR- 17675 WT+ ++ F++ + K + ++ AV ++ L + PL G L+D FGRR Sbjct: 255 WTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPL----IGHLSDLFGRRW 310 Query: 17674 ----PTLMVNIACYSLLELASGFAPSLTALLVLRALFGIAMGGEWGVGSALTMETVPTHA 17507 L+ +A Y L + + AP L LLV + +FG+ + G A + P Sbjct: 311 FLAGALLVAIVAAYPLFAMLNA-APGLKTLLVFQVVFGLVIASYEGPILAALSDMFP--- 366 Query: 17506 RGFVSGLLQAGYPSGYLLASVVFGLFYQTI 17417 G+L G Y LA + FG F I Sbjct: 367 ----DGVLSTGISISYNLAVITFGGFSAAI 392 >ref|NP_047372.1|putative maturation protein Length = 500 Score = 67.0 bits (162), Expect = 9e-11 Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 6/182 (3%) Frame = +3 Query: 993 SSAFNLVVNSVSRGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVPVPQSL 1172 S FN +V ++S ++ R+L++P ++ + + G +P V S Sbjct: 274 SGDFNALVKAIS-----------GSSDTRLLSRPNILIMDRERGYITVGQNVPFLVSNST 322 Query: 1173 ---GTI--SIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTT 1337 GT IE K GV L VTP V+ + L + ESS S+T +++ +T Sbjct: 323 TDGGTSVQRIERKDVGVSLEVTPHVMGDD-VILVINQESS------SVTDSTIAADIITN 375 Query: 1338 RRA-DTTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVI 1514 +R TTV + G++ V+GGLI E + + VP L D P+IG F++ S + KEL + Sbjct: 376 KRTLMTTVAVKSGQTIVLGGLISDEKRNVESGVPVLKDTPLIGGLFRSTSTKNVQKELRV 435 Query: 1515 IV 1520 ++ Sbjct: 436 VI 437 >ref|NP_064745.1|gp7 Length = 540 Score = 44.7 bits (104), Expect = 5e-04 Identities = 53/200 (26%), Positives = 79/200 (39%) Frame = -1 Query: 20610 LTAKITMAASTGSGVRASCGSSSQTISATTPAAHIPAKRDCAPAASFADVAE*PAPTGIP 20431 L+A ++T +G + S+S T SAT+ + A +AS A V+E A T Sbjct: 110 LSATAAATSATNAGASETAASASATASATSATNSATSASQAATSASAAAVSEGNAATS-- 167 Query: 20430 CSSPDTRFAQPSATRSRFGDTVSPCFSAKLRIEPYDSAYRISISANASSTVCIHALRSRC 20251 +T A + + S T + SA S+SA ++T +A S Sbjct: 168 ----ETNAANSATSASGSASTATTQASAA------------SVSATNAATSASNAATSAT 211 Query: 20250 GKPNSRCRKSIWPTIAIPYRCQSTT*PAAIDSTITTSVAGTRAPRPSTNNSASAVAPTTT 20071 S+ + S T AA +ST+TTS T A N + SA TT Sbjct: 212 NAAASQAAAAT-----------SETNAAASESTVTTS--ATNAATSEANAATSASTATTQ 258 Query: 20070 LARFACGAPASRSSATCGAS 20011 A A + +SAT A+ Sbjct: 259 ATNAATSASTASTSATNAAT 278 >ref|NP_046572.1|ABC transporter Length = 705 Score = 42.4 bits (98), Expect = 0.002 Identities = 39/171 (22%), Positives = 76/171 (44%), Gaps = 2/171 (1%) Frame = -1 Query: 25848 LMGENGAGKSTLMKILSGAYRADAGGEILIDGQRIEIDGPLAARDAGVAVIYQELCLSPN 25669 ++GE+G GKST K LS Y+ I ++G I L+ R V + Sbjct: 514 IIGESGTGKSTFAKSLSKLYKVP-DKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKG- 571 Query: 25668 LTVAENIYVGRELRRGNRRWGTIDRAAMARGCQDVLARLGAPFGPDTLVD--TLSIAEQQ 25495 T+ EN+ +G + I+ A + C + + L + + LS ++Q Sbjct: 572 -TIKENLCMGEIFDQNE-----IENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQ 625 Query: 25494 LVEIARAVHTRARILVMDEPTTPLSSRETEHLFRLIRQLREEGLAIIYISH 25342 + +ARA+ + ++L++DE + + T+ ++ + ++ II I+H Sbjct: 626 RLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM---DCLIILITH 673 >ref|NP_061549.1|Orf53 Length = 354 Score = 36.6 bits (83), Expect = 0.13 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 7/90 (7%) Frame = +2 Query: 17450 REQIAARVAGLQQPRHEAARVGRHGFHRQRGADAPFAAHRDAEQRAQHEQRGQARRET-- 17623 RE+ A A L++ R EAA + + +A A AE+RAQ E+ ARRE Sbjct: 183 REKYEAEQAELERLRAEAAAREQKEREERIAREAAEAERLAAERRAQEERDATARREAEA 242 Query: 17624 -----RREFEQRIAGDVDHQRRAAAEAVGE 17698 RRE E R+A + + + A+ E Sbjct: 243 KAAAERRELELRLAAEKAEREKLEAQQRAE 272 >ref|YP_024843.1|Pas57 Length = 305 Score = 35.0 bits (79), Expect = 0.38 Identities = 33/92 (35%), Positives = 44/92 (47%) Frame = -1 Query: 20130 TRAPRPSTNNSASAVAPTTTLARFACGAPASRSSATCGASLCCTEIARIFGNCLMTIVSA 19951 T AP PST+ SASA A T+ A + A AS +SA+ AS T SA Sbjct: 187 TCAP-PSTSTSASASASTSASASASTSASAS-TSASASAS---------------TSASA 229 Query: 19950 RPNVKPRSTGRATKSDMPPSRATPARMNSTPV 19855 + P +TG A+ S + A P + +TPV Sbjct: 230 SSSASPSTTGSASPSTTTSTTAAPG-ITTTPV 260 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,914,167 Number of Sequences: 14420 Number of extensions: 1720917 Number of successful extensions: 7103 Number of sequences better than 0.5: 11 Number of HSP's better than 0.5 without gapping: 4353 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7085 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 12134197440 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig303 (27,783 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_203489.1|hypothetical protein 37 0.081 ref|NP_918983.1|putative tail fiber protein 37 0.11 ref|YP_024502.1|putative exonuclease 37 0.14 ref|YP_164732.1|orf97 36 0.18 ref|NP_861756.1|gp47 recombination endonuclease subunit 35 0.31 >ref|NP_203489.1|hypothetical protein Length = 743 Score = 37.4 bits (85), Expect = 0.081 Identities = 22/66 (33%), Positives = 36/66 (54%) Frame = -3 Query: 4648 GLLHQALAGARESLDERTRELAQVREQQARLSTVDVPEALRAALADAQGFRNSGAREQAL 4469 GL + A+ S+ + +A RE+QAR + + A + A ++A G+R GAR AL Sbjct: 40 GLAALSRVAAQASMSQHLAAIAARREEQARQAESERDAARQEAASNANGWRVVGARRDAL 99 Query: 4468 AHEIAA 4451 E+A+ Sbjct: 100 ETEVAS 105 >ref|NP_918983.1|putative tail fiber protein Length = 830 Score = 37.0 bits (84), Expect = 0.11 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Frame = -3 Query: 4678 KTVANLLREHGLLHQALAGARESLDERTRELA-QVREQQARLSTVDVPEALRAALADAQG 4502 K V ++R + QA+ A++++DE T LA QV++ +A + D A+L+D Q Sbjct: 7 KEVDLIIRAKDMSAQAMKDAKKAIDEVTSSLADQVKQAKAATAGTDSLGKAAASLSDQQ- 65 Query: 4501 FRNSGAREQALAHEIAAAERTLSGALDALGQ 4409 + L+ A ++ +SGA DAL Q Sbjct: 66 --------KNLSKAADAVQKAMSGAADALDQ 88 >ref|YP_024502.1|putative exonuclease Length = 345 Score = 36.6 bits (83), Expect = 0.14 Identities = 64/262 (24%), Positives = 100/262 (38%), Gaps = 26/262 (9%) Frame = -3 Query: 7051 VKFIHAADIHLDSPLHGLSAYPDAPAAQLRNASRE---ALRQLVDRAIEEEVAFLVIAGD 6881 +KF+ D H H + Y + + RE AL+++ D A EE+ A ++ GD Sbjct: 1 MKFVFFTDSHF----HLFTNYAKPDEQYVNDRFREQIQALQKMFDIAREED-ATVIFGGD 55 Query: 6880 LYDG----DWKDHNTGIFFGQQMGRLRRAGIRAFVLGGNHDAESEMTKKLTLPDNVTVFG 6713 L+ D + +N +F Q+ R I +L GNHD+ +T L ++ FG Sbjct: 56 LFHKRNAVDTRVYNK-VFETFQLNR----DIEVLMLRGNHDS---VTNSLYTDSSIEPFG 107 Query: 6712 HRKPETVRLPEFDVA--LHGQSFKDKAVVDNLAIG-YPDP------------VPGYYNIG 6578 + LP +V L F + N+ + Y D V NI Sbjct: 108 Y-------LPNVEVCKNLDTLGFLGEEQDINIVMAPYGDETEEIKEFIKNKYVEDRVNIL 160 Query: 6577 VLHTALEGY----AAHANYAPCTLAELHAKGYDYWALGHVHEFQQWTGPSTVVFPGNLQG 6410 V H +EG +H +L YD+ LGH H Q + P+ +Q Sbjct: 161 VGHLGVEGSLTGKGSHRLEGAFGYQDLLPDKYDFILLGHYHRRQYFQNPNHFYGGSLMQQ 220 Query: 6409 RHIRETGRRGAVLVTVEQGNTQ 6344 E G L+ E+ T+ Sbjct: 221 SFSDEQEANGVHLIDTEKMTTE 242 >ref|YP_164732.1|orf97 Length = 2112 Score = 36.2 bits (82), Expect = 0.18 Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 15/133 (11%) Frame = -3 Query: 16126 LRSTRGLMSAARKPIAFSASR-TTSSRNMSFIAPPRGA-GNSSADGGTSVER----ARHA 15965 ++S+ + S A A AS+ TT+ N S+ A A N + G S R A A Sbjct: 677 MQSSVSVASQAASSAAIVASQATTTGDNASYAAAQALATANQAQTAGDSATRVANNASQA 736 Query: 15964 ASGAI-------ANVGSSIRRAGRARLRGTKNT--GGRASNSGASALAARISADVIPLAS 15812 ASGA+ N ++ A +A+ G T AS + + A+ A +A VI A+ Sbjct: 737 ASGAVIAGSTASVNADKAVSVANQAKSAGDNATRVANNASQAASGAILAGSTATVI--AN 794 Query: 15811 SSATIARFRQSAG 15773 ++T+A +SAG Sbjct: 795 KASTVANEAKSAG 807 >ref|NP_861756.1|gp47 recombination endonuclease subunit Length = 339 Score = 35.4 bits (80), Expect = 0.31 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 8/137 (5%) Frame = -3 Query: 7051 VKFIHAADIHLDSPLHGLSAYPDAPAAQLRNASREALRQLVDRAIEEEVAFLVIAGDLYD 6872 +K +H D H+ D P Q + R+ +RQ ++ + + + + GD +D Sbjct: 1 MKILHLGDFHI-------GVKQDDPWVQ--DIQRDGIRQAIEYSKKHGIKTWIQYGDWFD 51 Query: 6871 GDWK-DHNTGIFFGQQMGRLRRAGIRAFVLGGNHD-------AESEMTKKLTLPDNVTVF 6716 H T F + + + +AGI V GNHD + +++ LT +N T++ Sbjct: 52 VRKAITHRTMEFNREIVDMISKAGIHVHVTIGNHDMAFKNTITPNTVSELLTQFENFTIY 111 Query: 6715 GHRKPETVRLPEFDVAL 6665 H P TV +FD L Sbjct: 112 EH--PTTV---DFDGCL 123 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,651,614 Number of Sequences: 14420 Number of extensions: 1979483 Number of successful extensions: 7834 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 4586 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7824 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 12847643308 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig304 (23,120 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_076827.1|Csp 88 3e-17 ref|NP_945089.1|gp58 47 1e-04 ref|NP_891673.1|hypothetical protein 37 0.089 ref|NP_463486.1|L-alanoyl-D-glutamate peptidase 35 0.26 >ref|NP_076827.1|Csp Length = 66 Score = 88.2 bits (217), Expect = 3e-17 Identities = 44/64 (68%), Positives = 50/64 (78%) Frame = -3 Query: 20349 MATGTVKWFNDAKGFGFITPEGGGDDLFAHFSEIRVEGFKTLQENQKVEFEVKTGPKGLQ 20170 MA GTVKWFN KGFGFIT E G DLFAHFS I+ +GFK+L E QKVEF+V+ G +GLQ Sbjct: 1 MANGTVKWFNADKGFGFITSEEG-KDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQ 59 Query: 20169 AANI 20158 A NI Sbjct: 60 AVNI 63 >ref|NP_945089.1|gp58 Length = 297 Score = 46.6 bits (109), Expect = 1e-04 Identities = 34/131 (25%), Positives = 59/131 (45%) Frame = +1 Query: 7930 LALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRPTEAGQLLY 8109 L F +F+ AA L VA +V++++ +LET LG L R AL T AGQ Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71 Query: 8110 GRATRMLAELRGLQEDLHSQHDEPGGLLRVDCPAPFGRRHLMAALAAFMQRYPALQVDLV 8289 R +LA+ ++ ++ L + C + L +A F +P + V ++ Sbjct: 72 DRVHAILADC--VEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRIL 129 Query: 8290 LTDSMVDLQGA 8322 + + + +L A Sbjct: 130 VREGVFNLNAA 140 >ref|NP_891673.1|hypothetical protein Length = 129 Score = 37.0 bits (84), Expect = 0.089 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 16/119 (13%) Frame = -2 Query: 3667 KIMH---EQHGYEMALLEGYRSPERQNRLAQMGTNVTNAAAFQSYHQFGLAADN-AFLRD 3500 K++H E + + EG RS E Q + G + T +S H G A D A+ +D Sbjct: 21 KVVHRALELTPVDFGITEGVRSLETQKKYVAEGKSKT----MKSRHLHGFAVDVVAYPKD 76 Query: 3499 GKLVISEKDPWAMRGYQLYGQVAEQVG------LTWGGRWKM------MDLGHVEYHKP 3359 KD W M+ Y++ +Q G + WGG W + L H +Y P Sbjct: 77 -------KDTWNMKYYRMIADAFKQAGRELGVPVEWGGDWTSFKDGPHLQLPHSKYPDP 128 >ref|NP_463486.1|L-alanoyl-D-glutamate peptidase Length = 281 Score = 35.4 bits (80), Expect = 0.26 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 5/106 (4%) Frame = -2 Query: 3655 EQHGYEMALLEGYRSPERQNRLAQMGTNVTNAAAFQSYHQFGLAADNAFLRDGKLVISEK 3476 E +G E+ + E R+ E+Q G + T +SYH G A D + GK V Sbjct: 32 ESNGIEVLIYETIRTKEQQAANVNSGASQT----MRSYHLVGQALDFVMAK-GKTV---- 82 Query: 3475 DPWAM----RGYQLYGQVAEQVGLTWGGRWK-MMDLGHVEYHKPGF 3353 W +G + + A+ +G WGG W +D H++++ G+ Sbjct: 83 -DWGAYRSDKGKKFVAK-AKSLGFEWGGDWSGFVDNPHLQFNYKGY 126 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,338,910 Number of Sequences: 14420 Number of extensions: 1653539 Number of successful extensions: 6265 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 4057 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6254 length of database: 3,019,461 effective HSP length: 111 effective length of database: 1,418,841 effective search space used: 10776097395 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig305 (25,029 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 46 2e-04 ref|YP_164323.1|hypothetical protein 38 0.056 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 46.2 bits (108), Expect = 2e-04 Identities = 53/156 (33%), Positives = 63/156 (40%), Gaps = 16/156 (10%) Frame = -3 Query: 22453 PDPAVPLH-VRPVCARDDPRVQG---RVVPPAPGFRRAV--VDDEGQRRATRDGPAGGRP 22292 PDP +H P CA P + P AP R + R TR P G Sbjct: 89 PDPGPAVHPAAPGCAPAAPAAPEYAPALRPRAPECDRGAHHLRTRAPRTRTRAVPLGPGA 148 Query: 22291 LVVAGADDVRPERRRFGPQ-----QPVREMG-HQADLERRSAPEIRRRDGRPGQGA-RRD 22133 V +D R RRR P QP +G H+ RR +R R RPG GA RR Sbjct: 149 RVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVR-ARPGPGAARRP 207 Query: 22132 AARPRPEMERSARPPR---LRHDRLGRILARGQRRR 22034 RP PE R+ RP R RH R + R +R R Sbjct: 208 RRRPHPEHPRAVRPRRRTGRRHRRRASLRPRHRRHR 243 >ref|YP_164323.1|hypothetical protein Length = 2129 Score = 37.7 bits (86), Expect = 0.056 Identities = 37/115 (32%), Positives = 47/115 (40%), Gaps = 4/115 (3%) Frame = -3 Query: 22345 DDEGQRRATRDGPAGGRPLVVAGADDVRPERRRF--GPQQPVREMGHQADLERRSAPEIR 22172 D RR R G A R VAG ++P R R G +Q VR R P + Sbjct: 2027 DPRADRRGARSGGAFRRTPRVAGGQGLQPGRIRLHGGVRQAVRPY--------RDEPAVL 2078 Query: 22171 RRDGRPGQGARRDAARPRPEMERSARPPRLRHDRLGRIL--ARGQRRRPVQQGTP 22013 QGAR A R + + RPP H+R R+L +G+R P G P Sbjct: 2079 -------QGARHPARTARLQPAEARRPPGCHHER-RRLLPEQQGRRELPCLAGRP 2125 Score = 35.0 bits (79), Expect = 0.36 Identities = 37/113 (32%), Positives = 45/113 (39%), Gaps = 6/113 (5%) Frame = -2 Query: 15755 PESTRTTVRTDGFHRDRAPPPQGRDGVPPGRHQLHHQRRTRFVRATLRAAARPVDLRDRV 15576 P + R R+ G R R P G G+ PGR +LH +R A RP RD Sbjct: 2028 PRADRRGARSGGAFR-RTPRVAGGQGLQPGRIRLH---------GGVRQAVRP--YRDE- 2074 Query: 15575 PRAGRGKGVPACARTRRMGLRQQDGPDGAEH------PGDQGHRRFADLFRRP 15435 P +G P ART R+ + P G H P QG R L RP Sbjct: 2075 PAVLQGARHP--ARTARLQPAEARRPPGCHHERRRLLPEQQGRRELPCLAGRP 2125 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,307,514 Number of Sequences: 14420 Number of extensions: 1782292 Number of successful extensions: 6658 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 4231 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6647 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 11558384830 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig306 (30,644 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_944326.1|gp18 58 5e-08 ref|YP_024873.1|nudix hydrolase motif containing protein 47 1e-04 ref|NP_705643.1|gp17 47 1e-04 ref|NP_958122.1|gp17 47 1e-04 ref|NP_861819.1|NudE nudix hydrolase 37 0.15 >ref|NP_944326.1|gp18 Length = 698 Score = 58.2 bits (139), Expect = 5e-08 Identities = 40/97 (41%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Frame = -3 Query: 19659 ATIVCRQRSSVLLVARTAARWSLPGGTIRRGETPLQAAQRELAEETRLEGLALDYAV-QF 19483 A IV R VLL+ R A W LP G + GETP +AA+RE EET G A DY + Sbjct: 581 AGIVFRAGDKVLLMKRPAGDWGLPAGKVEDGETPEEAARRETLEET---GHAGDYVLAPL 637 Query: 19482 GGLTKLHHVFVADVPAHLTPRASNEIARCKWFTVDRL 19372 G + H FVADV ++E WF D L Sbjct: 638 GKYDEFFHAFVADVNP-FDVELNDEHTAFDWFDPDEL 673 >ref|YP_024873.1|nudix hydrolase motif containing protein Length = 578 Score = 47.0 bits (110), Expect = 1e-04 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = -3 Query: 19728 HDSAPVLPNMSTGPDTLAVIKERATIVCRQRSS--VLLVARTAARWSLPGGTIRRGETPL 19555 HD A + + +T V + A +V +S VLL+ R W LP G+I GETP Sbjct: 26 HDQAVAIALHTAQDETTLVERPAAGVVYVAATSNRVLLLCRPDGTWGLPAGSIEEGETPE 85 Query: 19554 QAAQRELAEET 19522 AA+RE EET Sbjct: 86 DAARRETCEET 96 >ref|NP_705643.1|gp17 Length = 695 Score = 46.6 bits (109), Expect = 1e-04 Identities = 33/89 (37%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Frame = -3 Query: 19629 VLLVARTAARWSLPGGTIRRGETPLQAAQRELAEETRLEGLALDYAVQFGGLTKLHHVFV 19450 VLL+ R A W LP G + ETP +AA+RE EET + V G H FV Sbjct: 588 VLLMKRPAGDWGLPAGKVEGNETPEEAARRETREETGYDHDG--ELVPLGKFDGFFHAFV 645 Query: 19449 ADVPAHLTP---RASNEIARCKWFTVDRL 19372 AHL P ++E WF D L Sbjct: 646 ----AHLEPFDVELNDEHTAFDWFNPDEL 670 >ref|NP_958122.1|gp17 Length = 694 Score = 46.6 bits (109), Expect = 1e-04 Identities = 33/89 (37%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Frame = -3 Query: 19629 VLLVARTAARWSLPGGTIRRGETPLQAAQRELAEETRLEGLALDYAVQFGGLTKLHHVFV 19450 VLL+ R A W LP G + ETP +AA+RE EET + V G H FV Sbjct: 587 VLLMKRPAGDWGLPAGKVEGNETPEEAARRETREETGYDHDG--ELVPLGKFDGFFHAFV 644 Query: 19449 ADVPAHLTP---RASNEIARCKWFTVDRL 19372 AHL P ++E WF D L Sbjct: 645 ----AHLEPFDVELNDEHTAFDWFNPDEL 669 >ref|NP_861819.1|NudE nudix hydrolase Length = 152 Score = 36.6 bits (83), Expect = 0.15 Identities = 20/59 (33%), Positives = 28/59 (47%) Frame = -3 Query: 19608 AARWSLPGGTIRRGETPLQAAQRELAEETRLEGLALDYAVQFGGLTKLHHVFVADVPAH 19432 A RW +P G + GE+P++AA RE EET G T+ F+ D+ H Sbjct: 39 AHRWDIPKGRVEPGESPIEAAIRECEEET--------------GFTQYDPAFLKDLGEH 83 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 110,338,494 Number of Sequences: 14420 Number of extensions: 2094621 Number of successful extensions: 8096 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 4573 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8080 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 14040400101 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig307 (28,039 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 44 9e-04 ref|YP_195253.1|hypothetical protein 37 0.082 ref|NP_818345.1|gp44 37 0.14 ref|NP_817998.1|gp25 37 0.14 ref|NP_061549.1|Orf53 35 0.31 ref|NP_817363.1|gp25 35 0.31 ref|YP_195122.1|hypothetical protein 35 0.31 ref|NP_490610.1|predicted lysis 35 0.41 ref|NP_203497.1|hypothetical protein 35 0.41 >ref|NP_046572.1|ABC transporter Length = 705 Score = 43.9 bits (102), Expect = 9e-04 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 8/84 (9%) Frame = +2 Query: 24950 LSGGQQQRVSIARALMNGGQVILADEPTGALDTKSGQDVIRILHELNALGHTIVIVTH-- 25123 LS GQ+QR+++ARA+++ QV++ DE +D + + + LH ++ L I+++TH Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCL---IILITHND 675 Query: 25124 ------DKAVARHARRIIEISDGE 25177 +K + RIIE S E Sbjct: 676 PSNFKYNKKLVFRNNRIIESSYSE 699 >ref|YP_195253.1|hypothetical protein Length = 3779 Score = 37.4 bits (85), Expect = 0.082 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 4/90 (4%) Frame = -2 Query: 2757 GAATTTLSGVNTYTGDTTINSGTLALNGAG----SLSATGTVNLTGAGATFDVTGASGAR 2590 G T+T G GD TIN G L +N G S+S G+V + G F TG G + Sbjct: 3592 GDGTSTFGGPIEVAGDATINGGDLVVNSDGNEIFSVSDNGSVKIAGISNYFSSTG--GRK 3649 Query: 2589 TIGSLAGAAGTNVTLGANSLTLNGSGNATY 2500 + S + LN SGN + Sbjct: 3650 WLYSAESVVNAETN---TNYFLNVSGNTVF 3676 >ref|NP_818345.1|gp44 Length = 326 Score = 36.6 bits (83), Expect = 0.14 Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Frame = -2 Query: 3687 GATLTGADAPVVAAYGGGTVNMSNSGTITGRVSLGSSGTPG--QGNTFTNSGTINGGVSM 3514 G+ G D P A GGG GRVS +S TPG GN+ +G GG Sbjct: 206 GSAEDGGDNPSGAGAGGGG---------GGRVSDSNSQTPGGRGGNSAVGTGGERGGA-- 254 Query: 3513 GANSTNTFNAVTGSSVNTAGGTGGAFN 3433 GAN ++ + TG + GG GG N Sbjct: 255 GANGSSAADQ-TGGNPGAGGGGGGGNN 280 Score = 35.8 bits (81), Expect = 0.24 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 2/91 (2%) Frame = -2 Query: 3687 GATLTGADAPVVAAYGGGTVNMSNSGTITGRVSLGSSGTPGQGNTFTNSGT--INGGVSM 3514 GA + P A +V + G TG S G GT G ++F + I GG + Sbjct: 102 GAKIPRVWVPREAMGSSYSVVLGLGGAYTGGGSTGFGGTDGGSSSFLSGSVSLIAGGGAR 161 Query: 3513 GANSTNTFNAVTGSSVNTAGGTGGAFNITVG 3421 GA A++GSS +GG G ++T G Sbjct: 162 GAI------ALSGSSTQVSGGAGSLTSVTSG 186 >ref|NP_817998.1|gp25 Length = 941 Score = 36.6 bits (83), Expect = 0.14 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 5/85 (5%) Frame = -2 Query: 3684 ATLTGADAPVVAAYGGGTVNMSNSGTITG--RVSLGSSGTPGQGNTFTNSGTINGG---V 3520 A +TG DA + GG S G R + +G G G +N TI+GG Sbjct: 843 AVITGLDA---TGFSGGNGGNGGSSPTNGQSRTNGAGAGGKGGGGKLSNDNTISGGNNGT 899 Query: 3519 SMGANSTNTFNAVTGSSVNTAGGTG 3445 S G F + GS + GGTG Sbjct: 900 SDGPAGNGGFGSAGGSGDGSNGGTG 924 >ref|NP_061549.1|Orf53 Length = 354 Score = 35.4 bits (80), Expect = 0.31 Identities = 43/140 (30%), Positives = 57/140 (40%), Gaps = 10/140 (7%) Frame = +1 Query: 556 ERAAGRTAQRQCVAAEVEARSRDTRQC--------AERLCARRGTQIERRAGACQVHRAG 711 E+ A+ + + AE AR + R+ AERL A R Q ER A A Sbjct: 184 EKYEAEQAELERLRAEAAAREQKEREERIAREAAEAERLAAERRAQEERDATA------- 236 Query: 712 RCEAAARAHRQRPCVDRRAARVGIRAGQRGGGRTVLHEAARTGNRTAQR--ETVAAAQRQ 885 R EA A+A +RR + + A + + + A R AQR E AA+RQ Sbjct: 237 RREAEAKA-----AAERRELELRLAAEKAEREKLEAQQRAEQAERDAQRRAEEATAAERQ 291 Query: 886 RGARTEIDRIADRQGRIRIE 945 R AD Q RI E Sbjct: 292 RQ--------ADEQARIERE 303 >ref|NP_817363.1|gp25 Length = 320 Score = 35.4 bits (80), Expect = 0.31 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 3/93 (3%) Frame = -2 Query: 3687 GATLTGADAPVVAAYGGGTVNMSNSGTITGRVSLGSSGTPGQGNTFTNSGTINGGVSMGA 3508 G + +G+ A+ G + + +G+ G ++G PG N T+ G GG G+ Sbjct: 164 GTSTSGSPGSGGTAFVSGISSTTANGSAGGAGDYNAAGAPGVDN--TSGGAAGGGGGSGS 221 Query: 3507 N-STNTFNAVTGSSVNTAGGTGGAF--NITVGP 3418 + ST F G +GG G F N GP Sbjct: 222 DQSTIYFGGKGGDVTGASGGAGATFTSNAQNGP 254 >ref|YP_195122.1|hypothetical protein Length = 3338 Score = 35.4 bits (80), Expect = 0.31 Identities = 69/303 (22%), Positives = 113/303 (37%), Gaps = 48/303 (15%) Frame = -2 Query: 3285 DVTSGNWTINGASTAQDATLSG-----GVAIINNNASLGTGTVTGNGGALQAGTT----- 3136 D SG+ T++G T + ++ G G A ++ N ++ +GT+ N + G + Sbjct: 2884 DTMSGSLTLSG--TGSNLSVGGTLGVTGNATLSGNLNVDSGTLFVNSTTNRVGVSQSTPA 2941 Query: 3135 -GLNVSNNVSLGAGGLTVQXXXXXXXXXXXXXXXXXTKNDGGTLTLSGANSYTGATXXXX 2959 L+V N+ +L G Q +D T + + T ++ Sbjct: 2942 ASLHVGNDGNLMLEGTAPQIIFRRSSDDTDIVFQEYNVDDDAFKTWAKNKNITFSSSDSV 3001 Query: 2958 XXXXXXXNSALGIGALNVNASAS----LDASTNVTLGNTVNLA-----TGSTLTLGGSNA 2806 G + +N A LD S NV + + + L +G ++ G+ Sbjct: 3002 GADANHLTIKSTNGRVGINRIADDAYRLDVSGNVRISDGIVLDNAADNSGVAISFRGAQT 3061 Query: 2805 XXXXXXXXXXXXXTKNGAATTTLSGVNTYTGDTTINSG-----TLALNGA--------GS 2665 + +T +G T+T + G TL+ NG GS Sbjct: 3062 YRNFRVGNQIDGNSLFEITPSTQNGGTTFTSPALVVKGGGGVITLSHNGIDDPSRTPQGS 3121 Query: 2664 LSATGTVNL--TGAGATFDV-TGASGART-----------IGSLAGAAGTNVTLGANSL- 2530 +A N+ +G+GATFDV T A+G T IG AG+N GAN L Sbjct: 3122 WTAVSGTNIIGSGSGATFDVTTNANGLPTIVVNNPGDFYAIGDQIQLAGSNFGGGANILV 3181 Query: 2529 TLN 2521 T+N Sbjct: 3182 TIN 3184 >ref|NP_490610.1|predicted lysis Length = 153 Score = 35.0 bits (79), Expect = 0.41 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Frame = +2 Query: 27062 SLIGTTAALYWQIGYLNRQIALGDANIAYAE--RTLALVRSRHTAGAVSGLDLAQAEQSL 27235 +L+G L W ++I L A +A AE R + + AG ++ L+ A L Sbjct: 12 ALLGALGLLLW---VQQQRIDLAQARLAQAELARKASDAQLSRQAGTITALEAA-----L 63 Query: 27236 AAQRAAQTQLIQQRTENRHALAI 27304 + +R AQ L QQR + R ALAI Sbjct: 64 SRERQAQADLDQQRQQLRQALAI 86 >ref|NP_203497.1|hypothetical protein Length = 207 Score = 35.0 bits (79), Expect = 0.41 Identities = 24/81 (29%), Positives = 43/81 (53%) Frame = +3 Query: 23631 QARASEESLRAQQRSTAAQLTQAELAFRRQQAMLPDDATSRESFEAAKATLDVQRATLAS 23810 +A A+E+ + A + A + +AE+A+ R A+ ++A++ E+ AA Sbjct: 35 RALAAEKEVAALNEALAEEHAKAEVAYARGLAVHAEEASAAEADNAA------------- 81 Query: 23811 LAAQIRSARIQIETAQANLGY 23873 L A +RSAR + AQ N+G+ Sbjct: 82 LLAALRSARESLGEAQPNIGW 102 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,631,330 Number of Sequences: 14420 Number of extensions: 2125163 Number of successful extensions: 8349 Number of sequences better than 0.5: 9 Number of HSP's better than 0.5 without gapping: 4669 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8291 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 12967019093 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig308 (29,226 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817552.1|gp103 65 3e-10 ref|NP_795404.1|head maturation protease 64 6e-10 ref|NP_835555.1|hypothetical protein, similar to scaffolding pro... 59 3e-08 ref|NP_061501.1|ClpP protease 59 3e-08 ref|NP_075503.1|protease 56 2e-07 ref|NP_803338.1|scaffolding protease 56 2e-07 ref|NP_050150.1|Cl