BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig284 (646,956 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_932363.1|hypothetical protein 380 e-104 ref|NP_945090.1|gp59 197 9e-49 ref|NP_046561.1|similar to Bacillus subtilis skin element YqcG 147 8e-34 ref|NP_046562.1|unknown 117 9e-25 ref|NP_945089.1|gp58 111 8e-23 ref|YP_164695.1|transposase 106 2e-21 ref|NP_076796.1|Orf17 89 4e-16 ref|NP_047360.1|ORF348; homologous to eryA gene product in L07626 88 1e-15 ref|NP_046572.1|ABC transporter 77 1e-12 ref|YP_024690.1|gp17 74 1e-11 ref|YP_164054.1|transcriptional regulator 68 8e-10 ref|NP_046877.1|putative non-heme haloperoxidase 64 2e-08 ref|NP_803663.1|ORF097 63 3e-08 ref|NP_835645.1|putative transposase 63 3e-08 ref|NP_859396.1|hypothetical protein 62 7e-08 ref|YP_025041.1|putative transposase B 60 2e-07 ref|NP_046584.1|putative transglycosylase 60 2e-07 ref|NP_536395.1|ISBt3 transposase subunit protein 60 3e-07 ref|NP_817650.1|gp61 56 4e-06 ref|NP_818251.1|gp200 54 2e-05 ref|NP_818239.1|gp188 53 3e-05 ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase 53 3e-05 ref|NP_944326.1|gp18 50 2e-04 ref|NP_620626.1|putative transposase 49 5e-04 ref|NP_958229.1|gene 55 protein 49 7e-04 ref|NP_818575.1|gp37 48 9e-04 ref|YP_024421.1|Hypothetical protein 47 0.002 ref|NP_919008.1|conserved hypothetical protein 45 0.006 ref|NP_042036.1|DNA primase 45 0.007 ref|NP_690787.1|immunity repressor 45 0.009 ref|YP_024873.1|nudix hydrolase motif containing protein 44 0.012 ref|NP_705643.1|gp17 44 0.016 ref|NP_958122.1|gp17 44 0.016 ref|NP_150136.1|repressor protein 43 0.027 ref|YP_024964.1|putative prophage repressor protein 43 0.027 ref|NP_046617.1|putative SPbeta phage repressor 43 0.027 ref|YP_164732.1|orf97 43 0.036 ref|NP_835729.1|hypothetical protein 43 0.036 ref|NP_817697.1|gp19 42 0.080 ref|NP_958267.1|hypothetical protein 42 0.080 ref|YP_164733.1|orf98 41 0.10 ref|NP_817699.1|gp21 41 0.14 ref|NP_536425.1|putative helix-turn-helix transcriptional regulator 41 0.14 ref|NP_945111.1|gp80 41 0.14 ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase 40 0.18 ref|NP_542287.1|unknown 40 0.18 ref|NP_878228.1|Int 40 0.18 ref|NP_695029.1|Integrase 40 0.18 ref|NP_996675.1|integrase 40 0.18 ref|NP_839878.1|Int 40 0.18 ref|NP_944342.1|gp33 40 0.23 ref|NP_047971.2|gp26 40 0.23 ref|YP_077230.1|Hypothetical protein 40 0.30 ref|NP_064745.1|gp7 40 0.30 ref|NP_817998.1|gp25 40 0.30 ref|NP_116524.1|integrase 40 0.30 ref|NP_108680.1|integrase 40 0.30 ref|NP_899345.1|hypothetical protein 40 0.30 ref|NP_076573.1|integrase 40 0.30 ref|NP_795660.1|putative integrase 39 0.40 ref|NP_944302.1|conserved phage protein 39 0.40 ref|YP_025049.1|putative repressor protein 39 0.40 >ref|NP_932363.1|hypothetical protein Length = 389 Score = 380 bits (975), Expect = e-104 Identities = 210/389 (53%), Positives = 266/389 (68%), Gaps = 6/389 (1%) Frame = +3 Query: 542166 RDAPVRSAILKELERQQSQVELIASENIVSRAVLEAQGSVLTNKYAEGYPGKRYYGGCEF 542345 +D V+S I E RQ +V LIASEN VS V++AQGS+ TNKYAEGYPGKRYYGGC Sbjct: 2 QDKVVQSIIEDEAMRQYCEVCLIASENYVSDDVMKAQGSIFTNKYAEGYPGKRYYGGCVK 61 Query: 542346 ADEVEALAIDRVKQIFNAGYANVQPHSGAQANGSVMLALAKPGDTVLGMSLDAGGHLTHG 542525 ADE+E LAI+R K++F+ +ANVQPHSG+QAN +V AL KPGD+VL MSLD GGHLTHG Sbjct: 62 ADEIENLAIERAKELFSCNFANVQPHSGSQANQAVYQALLKPGDSVLAMSLDCGGHLTHG 121 Query: 542526 AKPALSGKWFNAVQYGVNRD-TLRIDYDQVEALAHEHKPNLIIAGFSAYPRALDFARFRA 542702 K SGK ++ YGV D T+ I+ VE + L++ G+SAY ++ A + Sbjct: 122 HKANASGKIYDFHHYGVFSDGTININ-QVVEQIRTIPDLKLVVIGYSAYVGRINEATYAK 180 Query: 542703 IAD---SVGAKLMVDMAHIAGVIAVGRHANPVEH-AHVVTSTTHKTLRGPRGGFVLTNDE 542870 IAD S+GAKLMVDMAH AG +A HANP++ A VVT+TTHKTLRGPRGG +LTND Sbjct: 181 IADAAHSIGAKLMVDMAHFAGFVAARLHANPLKWGADVVTTTTHKTLRGPRGGLILTNDA 240 Query: 542871 DIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEVLHADFKTYIDNVLANAQALGEVLKAGG 543050 DIAKK+NSA+FPG+QGGPL+HVIA KAV FGE L D+ Y+ V NA + E A G Sbjct: 241 DIAKKVNSAIFPGIQGGPLLHVIAAKAVCFGEALREDYVDYMIQVAHNASIMYETFDAAG 300 Query: 543051 VDLVTGGTDNHLLLVDLRPK-GLKGAPVEQALERAGITCNKNGIPFDTEKPTVTSGIRLG 543227 LV G T+NH +L++ GL G EQ LE+ GI NKN +P DT P TSGIR+G Sbjct: 301 HKLV-GFTENHQVLLNTYESFGLTGREAEQLLEKEGIIVNKNMLPNDTRSPVETSGIRIG 359 Query: 543228 TPAGTTRGFGVAEFREVGRLILEVFDALR 543314 +PA TTRG+ ++F ++ I+ + + + Sbjct: 360 SPAMTTRGWVESDFYDITIKIMHILECAK 388 >ref|NP_945090.1|gp59 Length = 429 Score = 197 bits (501), Expect = 9e-49 Identities = 128/415 (30%), Positives = 203/415 (48%), Gaps = 3/415 (0%) Frame = +1 Query: 206869 RRIVIASVAGNAMEWYDFFVYGTAAALVFGHVFFXXXXXXXXXXXXXXXXXXXXXVARPL 207048 RR VIA + GN EW+DF Y + ++ +FF + RP+ Sbjct: 20 RRAVIAVIVGNGFEWFDFISYSFFSVII-AKLFFPSTDDNLSLLLSVSTIGVGFFM-RPI 77 Query: 207049 GGIVFGHVGDRYGRKASLVWTLLIMGASTFAIGLLPTYAQVGLWAPAALVVLRLLQGIAS 207228 GGIV G + D+ GR+A+L T+ +M A T IG PTY GL AP +VV RLLQG ++ Sbjct: 78 GGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSA 137 Query: 207229 GGEWGGGVLMISENAPPEQRGYYAAWSQLGVGGGFVLSS-XXXXXXXXXXXXXXRTWGWR 207405 GGE GG + E P E+ GYY +W Q +G +L+S +WGWR Sbjct: 138 GGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWR 197 Query: 207406 LPFLASVAIFAIGIYIRRHLPESRDFEQAGKRGAHAHLPIVECIRRHPKEILLAMGLRVA 207585 +PFL + + +GIYIR L + F + G A P+VE +R +E L+ GL V Sbjct: 198 IPFLLGLGLGPVGIYIRSRLNDP-GFPADERLGECA--PVVEVVRSFSREALVGFGLVVF 254 Query: 207586 ENGGAYIFLAFSLVY-GKYLGIPNGTMLTGVMIAMIVEMGAMLAWGRLSDRIGRKPVYLI 207762 +Y+ L + Y K L +P+ T V++ + + G LSD GR+ +L Sbjct: 255 WTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLFGRR-WFLA 313 Query: 207763 GALSL-VACAFPFFWLLDTRVTPLVWLALTIGTAVSHGAMIGTLPALVGELFSTEVRYSG 207939 GAL + + A+P F +L+ L + + + G + A + ++F V +G Sbjct: 314 GALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFPDGVLSTG 373 Query: 207940 VALGHEVASIFAGGMSPLIATALLARYHASWPVSLFLIALGLVTVATLCVMRETR 208104 +++ + +A I GG S I T +A H + + ++IA +V++ ++ + + R Sbjct: 374 ISISYNLAVITFGGFSAAIITWAIATTHNNLAPAFYVIAAAIVSLISVSLWQPRR 428 Score = 46.2 bits (108), Expect = 0.003 Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Frame = +3 Query: 64143 LTVSQMGIAFSAGTFGLLPGAMLGGRLADRIGRKRVLIASVVLF--GLLSIATAQVSTFA 64316 L+VS +G+ F G G ++GG +AD++GR+ L ++ L G I A A Sbjct: 63 LSVSTIGVGFFMRPIG---GIVIGG-IADKVGRRAALTVTIALMTAGTAMIGFAPTYKDA 118 Query: 64317 ------MLVVVRVLTGIGLGGAMPNLIALSSEAVEPRSRSSAVATMYCGIPFGGVIASVI 64478 M+VV R+L G GG M A E V + + I F ++ASV+ Sbjct: 119 GLGAPLMIVVARLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVL 178 Query: 64479 GVLL 64490 V + Sbjct: 179 AVFI 182 >ref|NP_046561.1|similar to Bacillus subtilis skin element YqcG Length = 571 Score = 147 bits (372), Expect = 8e-34 Identities = 69/115 (60%), Positives = 87/115 (75%) Frame = +3 Query: 614160 EDVKEYDVVPYRPSNSPLENHHGVLDVWMAKNVPDYGGKYPIKSPTIALSAESHAATKAA 614339 ++VK +DVV YRPSNSPLENHHGV+DVW NVP+Y + +PT+AL+ E H ATK Sbjct: 454 KEVKPFDVVDYRPSNSPLENHHGVMDVWAKHNVPNYVSRGS-NTPTVALTKEQHNATKKV 512 Query: 614340 YRDWLTMKTGRPVGGKVDWEAVSNREMQALSEQMFDAAKVPQASRDAYYRALNQY 614504 YR+WL KTG+ VGGKV+W+ VS RE+Q L+E+MFDAA VP+ +R YY A NQY Sbjct: 513 YREWLFEKTGKKVGGKVNWKEVSPREIQELTEKMFDAANVPKEARQQYYNAFNQY 567 >ref|NP_046562.1|unknown Length = 165 Score = 117 bits (294), Expect = 9e-25 Identities = 65/164 (39%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Frame = +2 Query: 614555 SIKEIVEIIRSDGRCQVLPASGKLPQLPHADMAY--PNDMVEFYNLCGGVILFRPGKDNI 614728 SI +++ I S C++ A G LP D + P D+ EFY CGG +L+ D Sbjct: 2 SIDMLIKKIASTSDCRLFEADG----LPVIDEKHQLPKDISEFYEQCGGAVLYE-NADYP 56 Query: 614729 SFKILPAGDVLQTNMIIVGDPCEDDISFSWYAICKTDNGDYISIDTSKERNGRCYDSNFE 614908 + + PA L N IIVG+ CE+DIS WY +C G+Y++ID + +R G+CYDS F+ Sbjct: 57 IYIVRPAEFEL-ANPIIVGELCEEDISSEWYIVCTDGKGEYLTIDLNDQRKGKCYDSFFD 115 Query: 614909 VHGVVGSCPIIALSFSELLDELYKSSGADIFWKAKDY---GDAY 615031 HG+VG +IA SF++L+ L ++ G +W DY GDAY Sbjct: 116 RHGIVGETQVIASSFTDLIQRLLENKGKHWYWLRDDYVSLGDAY 159 >ref|NP_945089.1|gp58 Length = 297 Score = 111 bits (277), Expect = 8e-23 Identities = 89/298 (29%), Positives = 128/298 (42%), Gaps = 5/298 (1%) Frame = -3 Query: 558556 KPEPLPSMQALRAFEXXXXXXXXXXXXRELGSTQPAVSQQVFQLEAELGVPLFERSPRGV 558377 K +PLP +Q L F+ EL Q AVS+QV +LE LG LF R + + Sbjct: 2 KIQPLPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKAL 61 Query: 558376 TLTADGQCLYEAVRLSXXXXXXXXXXXXXXREHGALTIVTDFGFATYWLMPRLAGLKRVM 558197 LT GQ + V + +LTI G AT +L R+A Sbjct: 62 HLTRAGQQYADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEH 121 Query: 558196 PDVDVRVVTSQD-YDAQRDHGDIAVLF-GDGHWPSCTAARLFPESVTPVCSPAFRDAHRG 558023 P+V VR++ + ++ DI V + D P + E V C+P F R Sbjct: 122 PEVSVRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRR- 180 Query: 558022 VARAEHLLALPLLHVQPTRPERWLSWSGWFDAHGLE---SPAATRGVTFNSYALVIHAAL 557852 + L+ LL V + +W+ W WF E PA T ++ NSY +++ AL Sbjct: 181 -VPPQDLMEATLL-VAEEQQRQWMGWRDWFRLTVGEIGFRPART--ISANSYPVLLQLAL 236 Query: 557851 LGEGVALGWAPLVDELVAAGQLVKLVDAPVVTSRGYFLVRPPQRPEPDATHVFRRWLL 557678 G G LGW ++ LV +G+LV DA Y ++ P R + A +FR WLL Sbjct: 237 HGHGAILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLL 294 Score = 82.8 bits (203), Expect = 3e-14 Identities = 76/292 (26%), Positives = 122/292 (41%), Gaps = 16/292 (5%) Frame = -3 Query: 27739 RPLPPLAAIQSFVAAAQLGSVSKAADHLCRTQGAVSRQIQQLETHYRCALFVRHVSGLTL 27560 +PLPPL + F AAA+ G+ ++AA+ L QGAVS+Q+ +LET LFVR L L Sbjct: 4 QPLPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHL 63 Query: 27559 TAEG-------NALLTVAVDVLTQLVRHADVHARATSVLTLKLPSTFAVRWLLPRLPDIH 27401 T G +A+L V+ +++ H+ LT+ S A +L R+ + Sbjct: 64 TRAGQQYADRVHAILADCVEATALVMKEQTPHS-----LTIACASGTATLFLADRIAEFS 118 Query: 27400 RAMSGTELRISTSAD----DTPDFTTSDVDAIVVRGTGQWTGMDAIPLFSERLTPMCAPA 27233 +RI + +F D+ +R G+ + +E + CAP Sbjct: 119 AEHPEVSVRILVREGVFNLNAAEF---DIGVYYIRDVPP-PGIAGTAIVAEDVHAYCAPT 174 Query: 27232 LATSLR-SVADLAQVDLLHPGPSHAEWRCWLD----HVGARQIDAGRGLVFDTLELTLAA 27068 R DL + LL +W W D VG R + ++ + L Sbjct: 175 FLAGRRVPPQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQL 234 Query: 27067 STEGHGIAIGDPRMARDRLRAGSLVTPFEDVAQDGLSYFLVYPPQRAAQPKI 26912 + GHG +G M + +G LV + A G +Y +++P R P + Sbjct: 235 ALHGHGAILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAV 286 Score = 80.5 bits (197), Expect = 2e-13 Identities = 82/298 (27%), Positives = 136/298 (45%), Gaps = 12/298 (4%) Frame = +2 Query: 415952 LQAMSIFTHIARVGSFTAAAEIAGMSAGSASTLVRQLEAHLGVTLMQRSTRCIRLTAEGS 416131 LQ + F AR G+FT AAE ++ G+ S V +LE LG TL R + + LT G Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 416132 QYFEHCERILSEICE-----MKEQL--SGTGKIARGHLTVDVDQEVAHAILPFVPEFKAA 416290 QY + IL++ E MKEQ S T A G T+ + +A EF A Sbjct: 69 QYADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIA--------EFSAE 120 Query: 416291 FPEVALRINVGGDPDGLIANGVDCAV-VVGQLADSSLRSRRVGSFHALTVASPSYLARHG 416467 PEV++RI V L A D V + + + + + +P++LA Sbjct: 121 HPEVSVRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRR 180 Query: 416468 IPRDPEGLRDHEII--HYTPRRFGPTRE-FRYMVGGEEVRLKFPERISVNDAGSAIRYAV 416638 +P P+ L + ++ R++ R+ FR VG E+ + IS N ++ A+ Sbjct: 181 VP--PQDLMEATLLVAEEQQRQWMGWRDWFRLTVG--EIGFRPARTISANSYPVLLQLAL 236 Query: 416639 GGVGVVQVCERMVSEEISAGRLVSILEENSPPPQPISVLY-SDRKHVPMSVRAFLDWI 416809 G G + + M++ + +G+LV + ++ V++ +DR+ P +V F +W+ Sbjct: 237 HGHGAILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTP-AVTMFREWL 293 Score = 78.6 bits (192), Expect = 6e-13 Identities = 76/288 (26%), Positives = 111/288 (38%), Gaps = 4/288 (1%) Frame = +3 Query: 442002 PLTALRVFEASARLGTFKAAADELSVTPAAVSHQIKSLESRVGVLLFERGAGGVRLTEEG 442181 PL L F+A+AR G F AA+EL+V AVS Q+ LE+ +G LF R A + LT G Sbjct: 8 PLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAG 67 Query: 442182 ERLFRASHDALLALSRGLDALRPDAADERALVLTTTPAFAAMWLIPRLGAFRRVDPHLHI 442361 ++ H A+LA AL +L + A ++L R+ F P + + Sbjct: 68 QQYADRVH-AILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 442362 KVETGNALVDLERDARIDLAI-RATSRKFPALHEIALIXXXXXXXXXXXXXXHRTDEPLD 442538 ++ + +L A D+ + P + A++ R P D Sbjct: 127 RILVREGVFNLNA-AEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVPPQD 185 Query: 442539 LIET---VWDTPLPVSVDWASWCRAAGREAWLERAVFRHYDDEHYALQAVLHGQGIALLS 442709 L+E V + + W W R E A + LQ LHG G L Sbjct: 186 LMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAILGW 245 Query: 442710 SVLAAEHVERGALVPIEPAVRLAGARFVALCRPGREREPQVRRFLDWL 442853 + VE G LV A G + + R P V F +WL Sbjct: 246 KHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWL 293 Score = 68.6 bits (166), Expect = 6e-10 Identities = 44/131 (33%), Positives = 68/131 (51%) Frame = +2 Query: 257471 AVAETGNMTRAAEAVNRSQSAVSMQIKSLEDAIGRPLFVRKPRSIVLTREGEVLLGFARR 257650 A A GN TRAAE +N +Q AVS Q+ LE +G LFVR +++ LTR G+ Sbjct: 17 AAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHA 76 Query: 257651 MLALRDEAWAAVVRPEVTGKVVIGVPDDYASSLLPSVLKKFSATYPKVEIQVMGLPSSAL 257830 +LA EA A V++ + + I A+ L + +FSA +P+V +++ Sbjct: 77 ILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRI-------- 128 Query: 257831 APLIKEGTVDL 257863 L++EG +L Sbjct: 129 --LVREGVFNL 137 Score = 63.5 bits (153), Expect = 2e-08 Identities = 68/300 (22%), Positives = 128/300 (42%), Gaps = 15/300 (5%) Frame = -1 Query: 94503 VVTFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDARLFQRTTRSMSLTREGELFY 94324 +V F A G+F RAA+ L V + +VS+ V +LE L LF R +++ LTR G+ + Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71 Query: 94323 ENCRPGIEHLAQALEDMRELRSGPPSGHLRVGSTPGFGRKVIAPLLRDFHAQYPDITLDL 94144 + LA +E + L + G +A + +F A++P++++ + Sbjct: 72 DRVH---AILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRI 128 Query: 94143 LLNDRPADFSADRIDVA---FRD---GRMEDSAIVARRLIPMQMIVCASPSYAHRHGLPR 93982 L+ + + +A D+ RD + +AIVA + CA A R P+ Sbjct: 129 LVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDV----HAYCAPTFLAGRRVPPQ 184 Query: 93981 HVDELARHRCINLCTASGRVTEWE-----FRID----GVTQQRQLAAHHTFNDIDLVVRA 93829 + E L A + +W FR+ G R ++A N ++++ Sbjct: 185 DLME------ATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISA----NSYPVLLQL 234 Query: 93828 ALDGLGIAQLPAYQVCDLLADGRLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRVFIDYMI 93649 AL G G + + L+ G+LV HA G + + + + + + +F ++++ Sbjct: 235 ALHGHGAILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLL 294 Score = 62.8 bits (151), Expect = 3e-08 Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 5/233 (2%) Frame = +2 Query: 254261 LRHIHYFLAVAEHRSFTRAAAALHVSQPALSQQIRQLEDTLGAQLFDRTGRVTRLTDAGD 254440 L+ + +F A A H +FTRAA L+V+Q A+S+Q+ +LE LG LF R + LT AG Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 254441 VYFRYARQALHDLAEGRRAIHDVQDMSRGSLRVAVTPTFTSYLVGPLVEAFHRRYPDVSL 254620 Y L D E + +++ + SL +A + + + F +P+V Sbjct: 69 QYADRVHAILADCVEATALV--MKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEV-- 124 Query: 254621 SVREMSQERIEALLVDDELDVGIAF-DEVQTADIDAQALLVETLALVVNRGHALGSQRKA 254797 SVR + +E + L E D+G+ + +V I A++ E + G R+ Sbjct: 125 SVRILVREGVFNLNA-AEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAG--RRV 181 Query: 254798 GLRALHDAPLVLLTAEFATRMQIDRYFR----EHDLQPRVLMEANSLGAVIEI 254944 + L +A L++ + M +FR E +P + ANS ++++ Sbjct: 182 PPQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQL 234 Score = 60.8 bits (146), Expect = 1e-07 Identities = 63/290 (21%), Positives = 119/290 (41%), Gaps = 3/290 (1%) Frame = +2 Query: 189578 LQTMQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGVRLLNRSTRRVSVTAEGE 189757 LQ + + GNFT+AA+ L + + AV+K V +LE LG L R + + +T G+ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 189758 AFHARCVQLLAGIDDAFASFPKQRAVPKGRLRIDIALALAKTIVIPALPDFQQRYPQIEL 189937 + R +LA +A A K++ L I A A + + +F +P++ + Sbjct: 69 QYADRVHAILADCVEATALVMKEQT--PHSLTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 189938 VLGASDQPADLIGEGIDC-VVRVGTLKDSSMVARTVGAVSMATCASPAYIARHGLPRTLD 190114 + + +L D V + + + + A + +P ++A +P Sbjct: 127 RILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVPP--Q 184 Query: 190115 DLRTHRAVNFFTGRNRRVLEWT--FRPHGETIAVKLASSLLTDNSEALLSCGLAGLGIVH 190288 DL + + R+ + W FR I + A ++ ++ LL L G G + Sbjct: 185 DL-MEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAIL 243 Query: 190289 ALRPALQPSIDSGQLIELLPGVPAVPKPVSVLYPNRAHLPDKVRTFIDWL 190438 + + P ++SG+L+ + V++P V F +WL Sbjct: 244 GWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWL 293 Score = 55.8 bits (133), Expect = 4e-06 Identities = 33/79 (41%), Positives = 48/79 (60%) Frame = +2 Query: 576695 MPSLRQIQYFLTVADLGGFTPAAGALHVAQSALSRQIGQLEDELGFLLFDREPRGVRLTP 576874 +P L+ + +F A G FT AA L+VAQ A+S+Q+ +LE LG LF R+ + + LT Sbjct: 6 LPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTR 65 Query: 576875 AGAIYRERVASIPATLMAA 576931 AG Y +RV +I A + A Sbjct: 66 AGQQYADRVHAILADCVEA 84 Score = 55.8 bits (133), Expect = 4e-06 Identities = 40/140 (28%), Positives = 70/140 (50%) Frame = -2 Query: 604046 FVAVAELGTFHRAAEKLNLTQPGLSRRIQKLEQTLGVELFQRTTRSVTLTGVGRQFLPMA 603867 F A A G F RAAE+LN+ Q +S+++ KLE LG LF R +++ LT G+Q+ Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRV 74 Query: 603866 REQIAQLGMMLSSIQDIAQKRYGKVRLASIPTIVAQALPDVLRRYAAKYPHVAVQILDGN 603687 +A + + + ++ + +A L D + ++A++P V+V+IL Sbjct: 75 HAILADCVEATALV--MKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILVRE 132 Query: 603686 HDFVLSQVRAGIAEFGVSLH 603627 F L+ AEF + ++ Sbjct: 133 GVFNLN-----AAEFDIGVY 147 Score = 47.4 bits (111), Expect = 0.001 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 7/124 (5%) Frame = -3 Query: 623458 FHAVAKLGRFKDAAVHVNRSPSSVTAQIQKLEEMVAQRLFTRNNQAVELTQFG------- 623300 F A A+ G F AA +N + +V+ Q+ KLE + LF R+ +A+ LT+ G Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRV 74 Query: 623299 HKLLSDTTEFLLSHDRLVESLSPQMLTGKLRLGIPDSYAAHFMAEFLPRFAADRPLLELT 623120 H +L+D E + +++ +P LT + A F+A+ + F+A+ P + + Sbjct: 75 HAILADCVE---ATALVMKEQTPHSLT----IACASGTATLFLADRIAEFSAEHPEVSVR 127 Query: 623119 VEAR 623108 + R Sbjct: 128 ILVR 131 Score = 46.6 bits (109), Expect = 0.002 Identities = 28/105 (26%), Positives = 52/105 (49%) Frame = +1 Query: 631705 SRAAARVGRTQSALSQQMKRLEEVVDQPLFQRTGRGVVLTQPGERLLVHAQRILRLHDEA 631884 +RAA + Q A+S+Q+ +LE + LF R + + LT+ G++ IL EA Sbjct: 25 TRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHAILADCVEA 84 Query: 631885 MADLCGTGLSGTIRFGCPDDYAQVWLPSLLRQFSSQHPQAIVEVV 632019 A + ++ C A ++L + +FS++HP+ V ++ Sbjct: 85 TALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRIL 129 Score = 46.2 bits (108), Expect = 0.003 Identities = 38/122 (31%), Positives = 55/122 (45%) Frame = +3 Query: 292917 LKQLDAFLAVAEHRTIRGAARALGVTQPAVSGIVRELEHELGVPLVVRSVKGIALTDYGS 293096 L+ L F A A H AA L V Q AVS V +LE LG L VR K + LT G Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 293097 AFAIRARLIVEEIQRTRDEIEQLRLGTTGSVSIAVSPTVALTILPRAFAAFTRDLPGATL 293276 +A R I+ + + ++ T S++IA + A L A F+ + P ++ Sbjct: 69 QYADRVHAILADCVEATALV--MKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 293277 NV 293282 + Sbjct: 127 RI 128 Score = 44.3 bits (103), Expect = 0.012 Identities = 36/139 (25%), Positives = 58/139 (41%) Frame = +3 Query: 250317 FVAIADGGSFRQAADTLHVTQTAITQRLRKLEAYLGVALVEXXXXXXXXXXXXXXFLPQA 250496 F A A G+F +AA+ L+V Q A+++++ KLE +LG L + + Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRV 74 Query: 250497 RRLLNELSDALTEIRETGLSQRGDVTIACVPTVGVQYLPRILRAFSTHRPHDRVKILDHA 250676 +L + +A + + +TIAC +L + FS P V+IL Sbjct: 75 HAILADCVEATALVMKEQTPH--SLTIACASGTATLFLADRIAEFSAEHPEVSVRILVRE 132 Query: 250677 SASVLQAVLRREAEFGISI 250733 L A AEF I + Sbjct: 133 GVFNLNA-----AEFDIGV 146 Score = 43.5 bits (101), Expect = 0.021 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 8/133 (6%) Frame = -2 Query: 77906 RPLFDIDLLRALVMVADCGSFTTASARLHSTQSTVSQKVRRLEEIAGHRLLDRGARDVRP 77727 +PL + L A G+FT A+ L+ Q VS++V +LE G L R A+ + Sbjct: 4 QPLPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHL 63 Query: 77726 TDAGVTVLSYARRMLALNDEMLEALSGATVALTIRLGVPDDF----AAGRTT----HALA 77571 T AG YA R+ A+ + +EA AL ++ P A+G T +A Sbjct: 64 TRAG---QQYADRVHAILADCVEA-----TALVMKEQTPHSLTIACASGTATLFLADRIA 115 Query: 77570 AFKREHPQVKLEV 77532 F EHP+V + + Sbjct: 116 EFSAEHPEVSVRI 128 >ref|YP_164695.1|transposase Length = 387 Score = 106 bits (265), Expect = 2e-21 Identities = 78/247 (31%), Positives = 115/247 (46%), Gaps = 38/247 (15%) Frame = -2 Query: 253745 KIKDRSNFAQDARGNWFLNIVIEMPDVQARPIRSG---VGIDLGLKDFATLSTGEKLPN- 253578 KIK R + G ++L++ +E D +P+ VG+DLG+ D A S G+K + Sbjct: 145 KIK-RYTLILEPTGRYYLSLTVE--DNSIKPLEKTGAVVGVDLGVADLAITSDGKKYESF 201 Query: 253577 -------------DRFGRRA--------------------AEKLAKAQRARKHKRHIAKL 253497 +F +R E QRA++ K A Sbjct: 202 KPTYLDKQVRSWQSKFSKRKYIATTEVRQWNHNHNDYKMLVEDYHNWQRAKRIK---ACY 258 Query: 253496 HAKIANARADFQHKLALDLVRRFDYIAVGNVSAAKLARTR-MAKSVYDASWSSFRNKLRY 253320 AKIAN R D+ HK+ +LV ++D IA+ ++ L + +AKS+ + SW FR L Y Sbjct: 259 QAKIANKRKDYLHKITTELVEKYDVIAMEDLRTKNLLKNHHLAKSISNQSWREFRTILEY 318 Query: 253319 KAIAHGATFEEVDESGSTQSCSACGSQDSTTRPKGIAGLRVREWACSRCGVVHDRDINAA 253140 K +G V + ++Q CS+CG G L +REW C +CG HDRD+NAA Sbjct: 319 KCKWYGKQLIVVKPNYTSQICSSCGYHS------GKKPLEIREWTCYKCGTHHDRDVNAA 372 Query: 253139 LNILRCG 253119 +NIL G Sbjct: 373 VNILNKG 379 Score = 102 bits (254), Expect = 4e-20 Identities = 74/234 (31%), Positives = 107/234 (45%), Gaps = 38/234 (16%) Frame = +1 Query: 474025 GNWFLNIVIEMPDVQARPVRSG---VGIDLGLKDFATLSTGEKLPN-------------- 474153 G ++L++ +E D +P+ VG+DLG+ D A S G+K + Sbjct: 157 GRYYLSLTVE--DNSIKPLEKTGAVVGVDLGVADLAITSDGKKYESFKPTYLDKQVRSWQ 214 Query: 474154 DQFGRRA--------------------AEKLAKAQRARKHKRHIAKLHAKIANARADSQH 474273 +F +R E QRA++ K A AKIAN R D H Sbjct: 215 SKFSKRKYIATTEVRQWNHNHNDYKMLVEDYHNWQRAKRIK---ACYQAKIANKRKDYLH 271 Query: 474274 KLALDLVRHFDYIAVGNVSAAKLARTR-MAKSVYDASWSSFRNTLRYKAIAHGATFEEVD 474450 K+ +LV +D IA+ ++ L + +AKS+ + SW FR L YK +G V Sbjct: 272 KITTELVEKYDVIAMEDLRTKNLLKNHHLAKSISNQSWREFRTILEYKCKWYGKQLIVVK 331 Query: 474451 ESGSTQSCSACGSKDSTTRPKGIAGLRVREWACSDCGVEHDRDINAALNILRCG 474612 + ++Q CS+CG G L +REW C CG HDRD+NAA+NIL G Sbjct: 332 PNYTSQICSSCGYHS------GKKPLEIREWTCYKCGTHHDRDVNAAVNILNKG 379 >ref|NP_076796.1|Orf17 Length = 168 Score = 89.0 bits (219), Expect = 4e-16 Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 1/162 (0%) Frame = -2 Query: 72578 IRLLDAADAAQFQTVRLRAVDTAPTSFLPTLDEESQVPVDEFAKRLTPTQAQAVFGAFDG 72399 IRL+D +D + +Q +RL A+ A SF T + E + E +R++P ++ G FDG Sbjct: 3 IRLIDKSDWSSYQKLRLNALKAASESFGSTYEREVKFSEQEIIERISPNSSKFFMGIFDG 62 Query: 72398 DTLVGITGVRRDARTKIAHKATIWGVYVDAAYRGQRIAQALLDSATGHAANAW-GCKQLM 72222 L+G+ ++ K HK I+G+++ Y+ + +A+ LL + + +Q+ Sbjct: 63 KELIGMVSFHKEIGEKDRHKGDIYGMFIHGDYQNKGLAKLLLSTLINKVKEEYPDLEQIR 122 Query: 72221 LCVNDVNRTAERLYASQGFVRFGTEPRSLFVDGRFYDEHYMV 72096 L V N +A +LY GF ++G E +L +++DE MV Sbjct: 123 LSVVSNNISAVKLYGHLGFEKYGVEINALKTGDKYFDEDLMV 164 >ref|NP_047360.1|ORF348; homologous to eryA gene product in L07626 Length = 348 Score = 87.8 bits (216), Expect = 1e-15 Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 28/240 (11%) Frame = -2 Query: 253748 GKIKDRSNFAQDARGNWFLNIVIEMPDVQARPIRSG-VGIDLGLKDFATLSTGEKLPNDR 253572 GKIK+ + G W+++ +E+ + + VG+D G+ ATLS G Sbjct: 90 GKIKNAT--ISQLAGQWYISFQVEIETAEPNHTSTTIVGLDAGVAKLATLSDGTVFEPVN 147 Query: 253571 FGRRAAEKLAKAQRA-----------RKHKRHIAKLHAKIANARADFQHKLALDLVRRFD 253425 ++ +KLA+ QR +K KR I LH++IAN R D+ HK+ + + Sbjct: 148 SFQKNQKKLARLQRQLSRKVKFSNNWQKQKRKIQCLHSRIANIRRDYLHKVTTTVSKNHA 207 Query: 253424 YIAVGNVSAAKL----------------ARTRMAKSVYDASWSSFRNKLRYKAIAHGATF 253293 I + ++ + + A++ + +S+ D W R +L YK + G Sbjct: 208 MIVIEDLKVSNMSKSAAGTVSQPGRNVRAKSGLNRSILDQGWYEMRRQLEYKQLWRGGQV 267 Query: 253292 EEVDESGSTQSCSACGSQDSTTRPKGIAGLRVREWACSRCGVVHDRDINAALNILRCGRA 253113 V + ++Q C+ CG R L ++ C CG + D+N A NIL G A Sbjct: 268 LAVPPAYTSQRCACCGHTAKENR------LSQSQFRCQVCGYTANADVNGARNILAAGHA 321 Score = 87.4 bits (215), Expect = 1e-15 Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 28/240 (11%) Frame = +1 Query: 473983 GKIKDGTNFAQDARGNWFLNIVIEMPDVQARPVRSG-VGIDLGLKDFATLSTGEKLPNDQ 474159 GKIK+ T G W+++ +E+ + + VG+D G+ ATLS G Sbjct: 90 GKIKNAT--ISQLAGQWYISFQVEIETAEPNHTSTTIVGLDAGVAKLATLSDGTVFEPVN 147 Query: 474160 FGRRAAEKLAKAQRA-----------RKHKRHIAKLHAKIANARADSQHKLALDLVRHFD 474306 ++ +KLA+ QR +K KR I LH++IAN R D HK+ + ++ Sbjct: 148 SFQKNQKKLARLQRQLSRKVKFSNNWQKQKRKIQCLHSRIANIRRDYLHKVTTTVSKNHA 207 Query: 474307 YIAVGNVSAAKL----------------ARTRMAKSVYDASWSSFRNTLRYKAIAHGATF 474438 I + ++ + + A++ + +S+ D W R L YK + G Sbjct: 208 MIVIEDLKVSNMSKSAAGTVSQPGRNVRAKSGLNRSILDQGWYEMRRQLEYKQLWRGGQV 267 Query: 474439 EEVDESGSTQSCSACGSKDSTTRPKGIAGLRVREWACSDCGVEHDRDINAALNILRCGRA 474618 V + ++Q C+ CG R L ++ C CG + D+N A NIL G A Sbjct: 268 LAVPPAYTSQRCACCGHTAKENR------LSQSQFRCQVCGYTANADVNGARNILAAGHA 321 >ref|NP_046572.1|ABC transporter Length = 705 Score = 77.4 bits (189), Expect = 1e-12 Identities = 48/177 (27%), Positives = 82/177 (46%) Frame = -3 Query: 298345 VRDVDFVAERGGITFVVGETGAGKSTVFKLALKSIEPTDGRILVDGVDFATIDRADWYGA 298166 V D++ + +R ++GE+G GKST K K + D I ++G+D D Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 298165 VAVVPQDIVLLNDSLEDNILLGXXXXXXXXXXXXXXXAILPFIDGLPDGFRTTVGERGLK 297986 + + ++ L ++++N+ +G FI L + + E G Sbjct: 559 IVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSN 618 Query: 297985 LSGGERQRIAIARALYGNPTVLFLDEASSALDEATERDIMAHVRLLARDVTVIAITH 297815 LS G++QR+A+ARA+ P VL LDE+ S +D + + + L D +I ITH Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTK--LIYETLHRMDCLIILITH 673 Score = 58.2 bits (139), Expect = 8e-07 Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 6/195 (3%) Frame = -1 Query: 37509 VIRDVDLEIGAHEFCVFLGPSGCGKSTLLRMIAGLEDLSAGELSIDGRRVD--DVPAAER 37336 ++ D++L + + + +G SG GKST + ++ L + + ++G ++ D + + Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 37335 GVAMVFQSYALFPHMTVYENMAFG--LKLARVPKAEIDRKVRDAARIL--QLDTLLERKP 37168 + + ++ LF T+ EN+ G + A I + + L Q L Sbjct: 558 RIVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG 616 Query: 37167 KALSGGQRQRVAIGRAIVREPGVFLFDEPLSNLDAALRGQTRVEIAKLHRQFERASVVYV 36988 LS GQ+QR+A+ RAI+ +P V + DE LSN+D T++ LHR ++ + Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDP---DNTKLIYETLHRM--DCLIILI 671 Query: 36987 THDQTEAMTLADKIV 36943 TH+ K+V Sbjct: 672 THNDPSNFKYNKKLV 686 Score = 57.0 bits (136), Expect = 2e-06 Identities = 42/182 (23%), Positives = 88/182 (48%), Gaps = 3/182 (1%) Frame = -1 Query: 465105 VDDVSLTVQRGTITALVGASGSGKSTLLRMINRLIAPTSGTIRIDGVDTATVAPEQLRRG 464926 V+D++L + R ++G SG+GKST + +++L +I ++G+D +R+ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 464925 IGYAIQGHGLFPHWSVARNIATVPRLLGWPAERIDARVNELLDLFHLAPAEFAGKLPH-- 464752 I Y + LF ++ N+ + + +++ + +++ KL Sbjct: 559 IVYIDENPFLF-KGTIKENLC-MGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG 616 Query: 464751 -ELSGGQQQRVGVARALAAEPAILLMDEPFGALDPIIRNKAQDDLFALQRRLGITVVIVT 464575 LS GQ+QR+ +ARA+ +P +L++DE +DP + L R+ ++++T Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETL----HRMDCLIILIT 672 Query: 464574 HD 464569 H+ Sbjct: 673 HN 674 Score = 56.2 bits (134), Expect = 3e-06 Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 7/194 (3%) Frame = +3 Query: 199863 VADVNLSVEQGEFVSLLGPSGCGKTTTLQMIAGFVDVTHGRIALDGQDIT---HLKPNRR 200033 V D+NL +++ + V ++G SG GK+T + ++ V I L+G DI HL +R Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 200034 GLGIVFQSYALFPHMSVAENVGFG--LDMRGVDKXXXXXXXXXXXXXXXXXXXXHRFPR- 200204 + + ++ LF ++ EN+ G D ++ Sbjct: 559 -IVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG 616 Query: 200205 -ELSGGQRQRVAIARAVVIEPPVLLLDEPMSNLDAKLREDMQFELRAIQRKIGTTTIMVT 200381 LS GQ+QR+A+ARA++ +P VL+LDE +SN+D D + ++ I++T Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNID----PDNTKLIYETLHRMDCLIILIT 672 Query: 200382 HDQSEALSISDRVV 200423 H+ + ++V Sbjct: 673 HNDPSNFKYNKKLV 686 Score = 53.1 bits (126), Expect = 3e-05 Identities = 37/153 (24%), Positives = 76/153 (49%), Gaps = 6/153 (3%) Frame = +2 Query: 621905 VSIEVNKGEIVTLIGSNGAGKTMLMMTVCGTPRASSGRVLFEGNDITAMSTHQIMRQGMA 622084 +++ +++ + V +IG +G GK+ ++ + + G DI H +R+ + Sbjct: 502 INLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYD-HLSIRKRIV 560 Query: 622085 ISPEGRRVFPSLTVLENLKMGGFFASRHEIDDGI------EHVFKLFPRLKERATQRAGT 622246 E +F T+ ENL MG F ++EI++ E + L + + ++ Sbjct: 561 YIDENPFLFKG-TIKENLCMGEIF-DQNEIENACIMSQCHEFICNLDKQYSYKLSENGSN 618 Query: 622247 MSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAP 622345 +S G++Q LA+ RA++ +P++L+LDE + P Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNIDP 651 Score = 44.7 bits (104), Expect = 0.009 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 5/159 (3%) Frame = +1 Query: 436402 VHNVSFDVQEGEIFVLMGLSGSGKSTLIRLVNRLVDPSAGKVLIDGLDVXXXXXXXXXXX 436581 V +++ + + +++G SG+GKST + +++L + ++GLD+ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSI--- 555 Query: 436582 XXKDMSMVFQSFALMPHRTVVSNAAFGLEVGGMGKKERERRAMEVLEQVGLAP--FSHKL 436755 + + + T+ N G E+ + E + E + +S+KL Sbjct: 556 --RKRIVYIDENPFLFKGTIKENLCMG-EIFDQNEIENACIMSQCHEFICNLDKQYSYKL 612 Query: 436756 P---SELSGGMQQRVGLARALAVNPSLMIMDEAFSALDP 436863 S LS G +QR+ LARA+ P ++I+DE+ S +DP Sbjct: 613 SENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDP 651 >ref|YP_024690.1|gp17 Length = 138 Score = 73.9 bits (180), Expect = 1e-11 Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Frame = -2 Query: 300665 MNSFSLRLKQERRRLQMNQAEFGEAGGVRKQAQSNYEQGSRIPDASYLTRLAEIGVDVQY 300486 M+S RL++ER RL +Q FG V KQ+Q YE+G R PDASYL + +G DVQY Sbjct: 1 MDSIGERLREERERLGYSQTAFGALAEVTKQSQIKYEKGERSPDASYLAAIMRVGADVQY 60 Query: 300485 LLTGRPSDPGTLALTGDEELLLAGFRELKPRERRGVLALVAAINGTPTER---SGTGQA 300318 ++ S ++AL DE+ L++ +R + + +AA + T E+ GQA Sbjct: 61 IVGAIRS---SMALAPDEQELVSRYRSASLEVKAAAIGALAAASTTRQEQVFHGSVGQA 116 >ref|YP_164054.1|transcriptional regulator Length = 136 Score = 68.2 bits (165), Expect = 8e-10 Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 1/116 (0%) Frame = -2 Query: 300659 SFSLRLKQERRRLQMNQAEFGEAGGVRKQAQSNYEQGSRIPDASYLTRLAEIGVDVQYLL 300480 S RL+ ER RL Q EF E G K+ Q +EQG PDA L A G++V++++ Sbjct: 5 SLGERLRAERERLGYTQTEFAEIVGASKRTQIGWEQGRTAPDALALAAWANEGLNVEFVV 64 Query: 300479 TGRPSD-PGTLALTGDEELLLAGFRELKPRERRGVLALVAAINGTPTERSGTGQAS 300315 +G+ SD P L DE+LLL +R + +R+ +LA + + G RS +G S Sbjct: 65 SGKRSDRPAGPELPPDEQLLLEVYRAMSAAKRKELLA--SLLTGGSRRRSSSGGIS 118 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 63.5 bits (153), Expect = 2e-08 Identities = 63/232 (27%), Positives = 89/232 (38%), Gaps = 18/232 (7%) Frame = +3 Query: 404892 GHGTPVVFSHGWPLTSDAWDAQMLFFGRRGYRVIAHDRRGHGRSAQPWDGNDMDTYXXXX 405071 G G P+VF HG +++ A++ + G+RVIA D HGRS G+ ++ Sbjct: 20 GTGAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTGHTVEDMTRVT 79 Query: 405072 XXXXXXXXVRGAMLVGHSTGGGEVAHYIGRHGTARVAKVVLIGAVPPIMLKTEANPGGLP 405251 + A+ GHS GGG V RH RVA VL+ A Sbjct: 80 LKTLDELDIHRAIFAGHSMGGGMVVEIAARH-PHRVAAAVLLDA-------------AAG 125 Query: 405252 MEVFDGIREGVLKNRSQFYRDLAVPFHNFNREGATVSQGTIDSFWSQ---------GMMG 405404 E D I+ G Y LA F + G V+ D + + +G Sbjct: 126 QEHHDNIKVG-------HYATLA--FRAAKKLGEAVTDIVGDGYEAMHLRDTGEKLSFLG 176 Query: 405405 SIKGQFDCIR------EFSEVDYTEDLRKI---NVPVLVLHGDDDQIVPIDA 405533 ++ +R + D T L + VP VLHG DQIVP +A Sbjct: 177 MLRDSVSGLRFVRAAFALMKADTTPLLHAMYRHGVPTAVLHGLHDQIVPYEA 228 Score = 41.6 bits (96), Expect = 0.080 Identities = 31/120 (25%), Positives = 46/120 (38%) Frame = -3 Query: 4690 VLVHGAWHGAWCYAHVAAALAARGYLSIARDLPAHGIHARFPASYLARPLDKDAFGAEPS 4511 V +HG A Y + LA G+ IA D HG P + Sbjct: 26 VFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTGH--------------- 70 Query: 4510 PVANTTLDDYATQVMQAVDDAYALGRGKVVLVGHSMGGLAITAAAERAPEKIAKIVYLAA 4331 T++D ++ +D+ L + + GHSMGG + A R P ++A V L A Sbjct: 71 -----TVEDMTRVTLKTLDE---LDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDA 122 >ref|NP_803663.1|ORF097 Length = 816 Score = 63.2 bits (152), Expect = 3e-08 Identities = 88/346 (25%), Positives = 144/346 (41%), Gaps = 17/346 (4%) Frame = +1 Query: 369709 SESIELLAEDRPVEVEVDKDVIELL---ADDR---PVEVEVDSDVIEL-------LADDR 369849 +E I ++E ++ ++IE ADD PV +EL L D+ Sbjct: 120 AEEIGTISEGGKEVLDSTTEIIEAAQDAADDTELVPVAEAPGETAVELTPTEETPLGDET 179 Query: 369850 PVEVDVESEVIELLADDRPVEVDVESEVIELFADERPVEVEVDSEVIELLADD-RPVEVE 370026 P + E L A D PV S ++ DE EV SE + + DD P E Sbjct: 180 PPPAPLSEE---LPAGDEPV-----SSTMDTLPDEVLDAGEVVSEAVPGIDDDVTPEEAG 231 Query: 370027 VESDVIELLADDRPVEVDVDSESIELLADDRPVEVEVDSEVIELLADDRPXXXXXXXXXX 370206 E + +++ P DV+ E + P + ++EV+E + D Sbjct: 232 AEQTTADESSNESP---DVEITETEEVDITEPAVADAETEVVETVEDTPDTTDSEVAEVV 288 Query: 370207 XLLADDRPVEVDVDSEVIELLADDRPVEVEVDSDVIELLADDKPVEVEVESDVIELLADD 370386 ++ P E + D E++A D EV V ++E A+ V E S++ E+ + Sbjct: 289 ETESESIPAEAEPD----EIVAVDE--EVAVTDPIVEEAAETAEVAEEGLSELEEVRDEA 342 Query: 370387 RPVEVEVDSDVIELLADERPVEVEV-ESDVMELLADDKPVD--VEVDSEVIELLADDRPV 370557 DSD ++L +E E V E++ +A+ + VE DSE I ADD Sbjct: 343 EEELTNDDSDSTDVLINEAETEETVAETETASTIAEPTIEEGAVEDDSETIVAEADDDVS 402 Query: 370558 EVEVESDVIELLADERPVEVEVESDVIELLADDKPVDVEVDSEVIE 370695 E ++E + E D V+VEV D +E AD+ + +++ +E Sbjct: 403 EDDIEEKLAEGEIDIPDVDVEVTEDDVE-EADEAADEAVAEADDLE 447 Score = 62.4 bits (150), Expect = 4e-08 Identities = 77/279 (27%), Positives = 119/279 (42%), Gaps = 4/279 (1%) Frame = +1 Query: 369670 LLADDRPVEVDVDSESIELLAEDRPVEVEVDKDVIELLADD-RPVEVEVDSDVIELLADD 369846 L A D PV +D+ E+L EV + + + DD P E + + +++ Sbjct: 189 LPAGDEPVSSTMDTLPDEVLDAG-----EVVSEAVPGIDDDVTPEEAGAEQTTADESSNE 243 Query: 369847 RPVEVDVESEVIELLADDRPVEVDVESEVIELFADERPVEVEVDSEVIELLADDRPVEVE 370026 P DVE E + P D E+EV+E D +EV+E ++ P E E Sbjct: 244 SP---DVEITETEEVDITEPAVADAETEVVETVEDTPDTTDSEVAEVVETESESIPAEAE 300 Query: 370027 VESDVIELLADDRPVEVDVDSESIELLADDRPVEVEVDSEVIELLADDRPXXXXXXXXXX 370206 + E++A D EV V +E A+ V E SE+ E+ + Sbjct: 301 PD----EIVAVDE--EVAVTDPIVEEAAETAEVAEEGLSELEEVRDEAEEELTNDDSDST 354 Query: 370207 XLLADDRPVEVDV-DSEVIELLADDRPVE--VEVDSDVIELLADDKPVEVEVESDVIELL 370377 +L ++ E V ++E +A+ E VE DS+ I ADD E ++E + E Sbjct: 355 DVLINEAETEETVAETETASTIAEPTIEEGAVEDDSETIVAEADDDVSEDDIEEKLAEGE 414 Query: 370378 ADDRPVEVEVDSDVIELLADERPVEVEVESDVMELLADD 370494 D V+VEV D +E ADE E E+D +E +D Sbjct: 415 IDIPDVDVEVTEDDVE-EADEAADEAVAEADDLEDEVED 452 Score = 61.6 bits (148), Expect = 7e-08 Identities = 75/300 (25%), Positives = 128/300 (42%), Gaps = 6/300 (2%) Frame = +1 Query: 369775 ELLADDRPVEVEVDSDVIELLADDRPVEVDVESEVIELLADD-RPVEVDVESEVIELFAD 369951 EL A D PV S ++ L D+ +V SE + + DD P E E + ++ Sbjct: 188 ELPAGDEPV-----SSTMDTLPDEVLDAGEVVSEAVPGIDDDVTPEEAGAEQTTADESSN 242 Query: 369952 ERPVEVEVDSEVIELLADDRPVEVEVESDVIELLADDRPVEVDVDSESIELLADDRPVEV 370131 E P ++E +++ P + E++V+E + D +E +E ++ P E Sbjct: 243 ESPDVEITETEEVDIT---EPAVADAETEVVETVEDTPDTTDSEVAEVVETESESIPAEA 299 Query: 370132 EVDSEVIELLADDRPXXXXXXXXXXXLLADDRPVEVDVDSEVIELLADDRPVEVEVDSDV 370311 E D E++A D EV V ++E A+ V E S++ Sbjct: 300 EPD----EIVAVDE--------------------EVAVTDPIVEEAAETAEVAEEGLSEL 335 Query: 370312 IELLADDKPVEVEVESDVIELL-----ADDRPVEVEVDSDVIELLADERPVEVEVESDVM 370476 E+ + + +SD ++L ++ E E S + E +E VE + E+ V Sbjct: 336 EEVRDEAEEELTNDDSDSTDVLINEAETEETVAETETASTIAEPTIEEGAVEDDSETIVA 395 Query: 370477 ELLADDKPVDVEVDSEVIELLADDRPVEVEVESDVIELLADERPVEVEVESDVIELLADD 370656 E ADD + +++ ++ E D V+VEV D +E ADE E E+D +E +D Sbjct: 396 E--ADDDVSEDDIEEKLAEGEIDIPDVDVEVTEDDVE-EADEAADEAVAEADDLEDEVED 452 Score = 51.2 bits (121), Expect = 1e-04 Identities = 87/327 (26%), Positives = 131/327 (40%), Gaps = 22/327 (6%) Frame = +1 Query: 372094 EPAPSATELSVLTTAPRPTATELIVLATAPEPMATASAPVAVLSAPLEFAWKYLMPWLLM 372273 + A TEL + AP TA EL T P+ + P A LS L + + M Sbjct: 145 QDAADDTELVPVAEAPGETAVELT--PTEETPLGDETPPPAPLSEELPAGDEPVSS--TM 200 Query: 372274 LLIAEPTLLAVEVVPFAL*VV-------YAGAETVPVAGS*VEPPPSADAVLVPRLFVFV 372432 + + L A EVV A+ + AGAE S E P Sbjct: 201 DTLPDEVLDAGEVVSEAVPGIDDDVTPEEAGAEQTTADESSNESPDVE------------ 248 Query: 372433 VTELRPVDSEPMELVADERPVDVEVDSDVIELLADDSPVEADVE-SDVTELLVELRPVDS 372609 +TE VD P + +++V+E + +D+P D E ++V E E P ++ Sbjct: 249 ITETEEVDIT--------EPAVADAETEVVETV-EDTPDTTDSEVAEVVETESESIPAEA 299 Query: 372610 EPMELVADDKPVEVEVESDVIELLADDSPVEADVESDVTELL----VELRPVDSDPMELV 372777 EP E+VA D+ EV V ++E A+ + V + S++ E+ EL DSD +++ Sbjct: 300 EPDEIVAVDE--EVAVTDPIVEEAAETAEVAEEGLSELEEVRDEAEEELTNDDSDSTDVL 357 Query: 372778 -----ADERPVDVEVESDVIELLADDSPVEADXXXXXXXXXXXXRPVDNEP--MELVADE 372936 +E + E S + E ++ VE D D E E D Sbjct: 358 INEAETEETVAETETASTIAEPTIEEGAVEDDSETIVAEADDDVSEDDIEEKLAEGEIDI 417 Query: 372937 RPVDVEVDSDVIE---LLADDRPVDAD 373008 VDVEV D +E AD+ +AD Sbjct: 418 PDVDVEVTEDDVEEADEAADEAVAEAD 444 Score = 50.8 bits (120), Expect = 1e-04 Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 3/191 (1%) Frame = +1 Query: 371146 EVESDVIELLADERPVEVEVESDVIELLADERPVEVEVESDVIELLADDRPVEVEVESDV 371325 +VE E + P + E++V+E + D ++V+E ++ P E E + Sbjct: 246 DVEITETEEVDITEPAVADAETEVVETVEDTPDTTDSEVAEVVETESESIPAEAEPD--- 302 Query: 371326 IELLADDRPVEVEVDNDVIELLADDKPVEVEVESDVIELLADDRPVEVEVESDVIELLAD 371505 E++A D EV V + ++E A+ V E S++ E+ + +SD ++L + Sbjct: 303 -EIVAVDE--EVAVTDPIVEEAAETAEVAEEGLSELEEVRDEAEEELTNDDSDSTDVLIN 359 Query: 371506 DRPVEVEV-ESDVIELLADDRPVE--VEVESDVIELLADDRPVEVEVDNDVIELLADDRP 371676 + E V E++ +A+ E VE +S+ I ADD E +++ + E D Sbjct: 360 EAETEETVAETETASTIAEPTIEEGAVEDDSETIVAEADDDVSEDDIEEKLAEGEIDIPD 419 Query: 371677 VEVEVDSDVIE 371709 V+VEV D +E Sbjct: 420 VDVEVTEDDVE 430 Score = 48.9 bits (115), Expect = 5e-04 Identities = 54/254 (21%), Positives = 110/254 (43%), Gaps = 4/254 (1%) Frame = +1 Query: 371119 LADDKPVEVEVESDVIELLADERPVEVEVESDVIELLADE-RPVEVEVESDVIELLADDR 371295 L+++ P E S ++ L DE EV S+ + + D+ P E E + +++ Sbjct: 185 LSEELPAGDEPVSSTMDTLPDEVLDAGEVVSEAVPGIDDDVTPEEAGAEQTTADESSNES 244 Query: 371296 PVEVEVESDVIELLADDRPVEVEVDNDVIELLADDKPVEVEVESDVIELLADDRPVEVEV 371475 P E++ +++ P + + +V+E + D ++V+E ++ P E E Sbjct: 245 PDVEITETEEVDIT---EPAVADAETEVVETVEDTPDTTDSEVAEVVETESESIPAEAEP 301 Query: 371476 ESDVIELLADDRPVEVEVESDVIELLADDRPVEVEVESDVIELLADDRPVEVEVDNDVIE 371655 + E++A D EV V ++E A+ V E S++ E+ + D+D + Sbjct: 302 D----EIVAVDE--EVAVTDPIVEEAAETAEVAEEGLSELEEVRDEAEEELTNDDSDSTD 355 Query: 371656 LLADDRPVEVEV-DSDVIELLAXXXXXXXXXXXXXXXLLA--DDKPVEVEVESDVIELLA 371826 +L ++ E V +++ +A ++A DD E ++E + E Sbjct: 356 VLINEAETEETVAETETASTIAEPTIEEGAVEDDSETIVAEADDDVSEDDIEEKLAEGEI 415 Query: 371827 EDRPVEVEVDSDEM 371868 + V+VEV D++ Sbjct: 416 DIPDVDVEVTEDDV 429 Score = 47.8 bits (112), Expect = 0.001 Identities = 99/481 (20%), Positives = 177/481 (36%), Gaps = 6/481 (1%) Frame = +1 Query: 370246 DSEVIELLADDRPVEVEVDSDVIELLADDKPVEVEVESDVIELLADDRPVEVEVDSDVIE 370425 D +E V+ D ++++ L D +E++ V+ D+D+I Sbjct: 16 DGTAVEQDVSKVETSVKDDHELVQDLKKDNDASATIENET-----------VKTDTDIIS 64 Query: 370426 LLADERPVEVEVESDVMELLADDKPVDVEVDSEVIELLADDRPVEVEVESDVIEL-LADE 370602 E +S V ++ + P + V+ + E LA E E V E +A+E Sbjct: 65 AEEHEETAHAADKSAV--IVEEVVPEETVVEESIPEPLATTSVEEGEEAVKVAEAEIAEE 122 Query: 370603 RPVEVEVESDVIELLAD--DKPVDVEVDSEVIELLAXXXXXXXXXXXXXXXLLADDRPXX 370776 E +V++ + + D D+E++ + L D+ P Sbjct: 123 IGTISEGGKEVLDSTTEIIEAAQDAADDTELVPVAEAPGETAVELTPTEETPLGDETPPP 182 Query: 370777 XXXXXXXXXLLADDRPVEVDVDSEVIELLADDRPVEADXXXXXXXXXXXXXXXDSEPMEL 370956 L A D PV +D+ E+L V + + Sbjct: 183 APLSEE---LPAGDEPVSSTMDTLPDEVLDAGEVVSEAVPGIDDDVTPEEAGAEQTTADE 239 Query: 370957 VADDKPXXXXXXXXXXXLLADDRPVEVEVDSEVMELLADXXXXXXXXXXXXXXLLADDKP 371136 +++ P + P + ++EV+E + D D Sbjct: 240 SSNESPDVEITETEEVDIT---EPAVADAETEVVETVEDTP---------------DTTD 281 Query: 371137 VEVEVESDVIELLADERPVEVEVESDVIELLADERPVEVEVESDVIELLADDRPVEVEVE 371316 EV ++V+E ++ P E E + V DE EV V ++E A+ V E Sbjct: 282 SEV---AEVVETESESIPAEAEPDEIVA---VDE---EVAVTDPIVEEAAETAEVAEEGL 332 Query: 371317 SDVIELLADDRPVEVEVDNDVIELLADDKPVEVEV-ESDVIELLADDRPVE--VEVESDV 371487 S++ E+ + D+D ++L ++ E V E++ +A+ E VE +S+ Sbjct: 333 SELEEVRDEAEEELTNDDSDSTDVLINEAETEETVAETETASTIAEPTIEEGAVEDDSET 392 Query: 371488 IELLADDRPVEVEVESDVIELLADDRPVEVEVESDVIELLADDRPVEVEVDNDVIELLAD 371667 I ADD E ++E + E D V+VEV D +E AD+ E + D +E + Sbjct: 393 IVAEADDDVSEDDIEEKLAEGEIDIPDVDVEVTEDDVE-EADEAADEAVAEADDLEDEVE 451 Query: 371668 D 371670 D Sbjct: 452 D 452 Score = 47.8 bits (112), Expect = 0.001 Identities = 61/266 (22%), Positives = 109/266 (40%), Gaps = 10/266 (3%) Frame = +1 Query: 368686 PVDSEPMPVEVEVDSDRI-----VLSVLLKPVDSELMPVEVEVDSEVIELVADDKPVEVE 368850 P EP+ ++ D + V+S + +D ++ P E + + +++ P Sbjct: 190 PAGDEPVSSTMDTLPDEVLDAGEVVSEAVPGIDDDVTPEEAGAEQTTADESSNESPDVEI 249 Query: 368851 VDRELIELFADDRPVEADVDSEVTELLVELRP--VDSEPMELVAXXXXXXXXXXXXXIEL 369024 + E +++ P AD ++EV E VE P DSE E+V Sbjct: 250 TETEEVDI---TEPAVADAETEVVET-VEDTPDTTDSEVAEVVE---------------- 289 Query: 369025 LADDKPVEVEVESDVIELLAEDRPVEVEVESDVIELLADERPVEVEVESDVIELLADDRP 369204 + + + E E D E++A D EV V ++E A+ V E S++ E+ + Sbjct: 290 -TESESIPAEAEPD--EIVAVDE--EVAVTDPIVEEAAETAEVAEEGLSELEEVRDEAEE 344 Query: 369205 VEVEVDKDVIELLADDRPVEVEV-DSEVMELLADXXXXXXXXXXXXXXLLA--DDKPVEV 369375 D D ++L ++ E V ++E +A+ ++A DD E Sbjct: 345 ELTNDDSDSTDVLINEAETEETVAETETASTIAEPTIEEGAVEDDSETIVAEADDDVSED 404 Query: 369376 DVESEVIELLADDRPVEVEVDSDVIE 369453 D+E ++ E D V+VEV D +E Sbjct: 405 DIEEKLAEGEIDIPDVDVEVTEDDVE 430 Score = 47.4 bits (111), Expect = 0.001 Identities = 99/468 (21%), Positives = 165/468 (35%), Gaps = 11/468 (2%) Frame = +1 Query: 368692 DSEPMPVEVEVDSDRIVLSVLLKPV--------DSELMPVEVEVDSEVIELVADDKPVEV 368847 D + VE V + +V + +P+ + + E E+ E+ + K V + Sbjct: 76 DKSAVIVEEVVPEETVVEESIPEPLATTSVEEGEEAVKVAEAEIAEEIGTISEGGKEV-L 134 Query: 368848 EVDRELIELFAD--DRPVEADVDSEVTELLVELRPVDSEPMELVAXXXXXXXXXXXXXIE 369021 + E+IE D D V E VEL P + P Sbjct: 135 DSTTEIIEAAQDAADDTELVPVAEAPGETAVELTPTEETP-------------------- 174 Query: 369022 LLADDKPVEVEVESDVIELLAEDRPVEVEVESDVIELLADERPVEVEVESDVIELLADD- 369198 L D+ P + EL A D PV S ++ L DE EV S+ + + DD Sbjct: 175 -LGDETPPPAPLSE---ELPAGDEPV-----SSTMDTLPDEVLDAGEVVSEAVPGIDDDV 225 Query: 369199 RPVEVEVDKDVIELLADDRPVEVEVDSEVMELLADXXXXXXXXXXXXXXLLADDKPVEVD 369378 P E ++ + +++ P ++E +++ +P D Sbjct: 226 TPEEAGAEQTTADESSNESPDVEITETEEVDIT---------------------EPAVAD 264 Query: 369379 VESEVIELLADDRPVEVEVDSDVIELLADDKPXXXXXXXXXXXLLADDKPXXXXXXXXXX 369558 E+EV+E + D DS+V E++ + + D+ Sbjct: 265 AETEVVETVEDTPDT---TDSEVAEVVETESESIPAEAEPDEIVAVDE------------ 309 Query: 369559 XLLADDRPVEVEVDSEVIELLAEDRPXXXXXXXXXXXLLADDRPVEVDVDSESIELLAED 369738 EV V ++E AE + + + DS+S ++L + Sbjct: 310 ---------EVAVTDPIVEEAAETAEVAEEGLSELEEVRDEAEEELTNDDSDSTDVLINE 360 Query: 369739 RPVEVEVDKDVIELLADDRPVEVEVDSDVIELLADDRPVEVDVESEVIELLADDRPVEVD 369918 E V E E S + E ++ VE D E+ V E ADD E D Sbjct: 361 AETEETV-------------AETETASTIAEPTIEEGAVEDDSETIVAE--ADDDVSEDD 405 Query: 369919 VESEVIELFADERPVEVEVDSEVIELLADDRPVEVEVESDVIELLADD 370062 +E ++ E D V+VEV + +E AD+ E E+D +E +D Sbjct: 406 IEEKLAEGEIDIPDVDVEVTEDDVE-EADEAADEAVAEADDLEDEVED 452 Score = 43.9 bits (102), Expect = 0.016 Identities = 61/224 (27%), Positives = 101/224 (45%), Gaps = 8/224 (3%) Frame = +1 Query: 368644 EVDSDDTELFVLLRPV--DSEPMPVEVEVDSDRIVLSVLLKPVD--SELMPVEVEVDSEV 368811 +V+ +TE + P D+E VE D+ S + + V+ SE +P E E D Sbjct: 246 DVEITETEEVDITEPAVADAETEVVETVEDTPDTTDSEVAEVVETESESIPAEAEPD--- 302 Query: 368812 IELVADDKPVEVEVDRELIELFADDRPVEADVDSEVTELL----VELRPVDSEPMELVAX 368979 E+VA D+ EV V ++E A+ V + SE+ E+ EL DS+ +++ Sbjct: 303 -EIVAVDE--EVAVTDPIVEEAAETAEVAEEGLSELEEVRDEAEEELTNDDSDSTDVLIN 359 Query: 368980 XXXXXXXXXXXXIELLADDKPVEVEVESDVIELLAEDRPVEVEVESDVIELLADERPVEV 369159 E ++ E E S + E E+ VE + E+ V E AD+ E Sbjct: 360 -------------EAETEETVAETETASTIAEPTIEEGAVEDDSETIVAE--ADDDVSED 404 Query: 369160 EVESDVIELLADDRPVEVEVDKDVIELLADDRPVEVEVDSEVME 369291 ++E + E D V+VEV +D +E AD+ E +++ +E Sbjct: 405 DIEEKLAEGEIDIPDVDVEVTEDDVE-EADEAADEAVAEADDLE 447 Score = 39.7 bits (91), Expect = 0.30 Identities = 61/218 (27%), Positives = 88/218 (40%), Gaps = 11/218 (5%) Frame = +1 Query: 368635 VEVEVDSDDTELFVLLRPVDSEPMPVEVEVDSDRIVLSVLLKPVDSELMPVEVEVDSEVI 368814 VE D+ DT + V++E + E + D IV VD E V V ++ Sbjct: 270 VETVEDTPDTTDSEVAEVVETESESIPAEAEPDEIVA------VDEE-----VAVTDPIV 318 Query: 368815 ELVADDKPVEVEVDRELIELFADDRPVEADVDSEVTELLVELRPVDSEPMELVAXXXXXX 368994 E A+ V E EL E+ + + DS+ T++L+ ++E E VA Sbjct: 319 EEAAETAEVAEEGLSELEEVRDEAEEELTNDDSDSTDVLIN----EAETEETVAETETAS 374 Query: 368995 XXXXXXXIELLADDKPVEVEVESD-------VIELLAE---DRP-VEVEVESDVIELLAD 369141 E +D + E+D + E LAE D P V+VEV D +E AD Sbjct: 375 TIAEPTIEEGAVEDDSETIVAEADDDVSEDDIEEKLAEGEIDIPDVDVEVTEDDVE-EAD 433 Query: 369142 ERPVEVEVESDVIELLADDRPVEVEVDKDVIELLADDR 369255 E E E ADD EVE K I L +++ Sbjct: 434 EAADEAVAE-------ADDLEDEVEDSKKTIGQLLEEQ 464 >ref|NP_835645.1|putative transposase Length = 246 Score = 62.8 bits (151), Expect = 3e-08 Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 12/205 (5%) Frame = -2 Query: 253709 RGNWFLNIVIEMPDVQARPIRSGVGIDLGLKDFATLSTGEKLPNDRFGR-RAAEKLAKAQ 253533 +G++++ I I + +G+DLG+ ATLS G D+ R RA + + Sbjct: 7 QGDYYIGIHINVETPPPEDEHGWIGVDLGIASIATLSDGTVFSGDQIERVRARYERTRRS 66 Query: 253532 RARKHKRHIAKLHAKIANARADFQHKLALDLVRRFDYIAVGNVSAAKL-----------A 253386 RK R ++ +++ FQ + + RR A+ +L Sbjct: 67 LQRKGTRGAKRVLKRLSGRERRFQQAINHTISRRIVDRAIAEGKGVRLEDLSGIRKSVRV 126 Query: 253385 RTRMAKSVYDASWSSFRNKLRYKAIAHGATFEEVDESGSTQSCSACGSQDSTTRPKGIAG 253206 R + ++ ++ R K+ YK G FE +D ++Q C CG + R Sbjct: 127 RKSQRRRIHRWAFYDLRIKIAYKCALAGVPFELIDPRYTSQRCPVCGHTERANRKS---- 182 Query: 253205 LRVREWACSRCGVVHDRDINAALNI 253131 ++ C CG+ + D+ A+NI Sbjct: 183 --QSKFVCRSCGLEANADVVGAINI 205 Score = 60.5 bits (145), Expect = 2e-07 Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 12/205 (5%) Frame = +1 Query: 474022 RGNWFLNIVIEMPDVQARPVRSGVGIDLGLKDFATLSTGEKLPNDQFGR-RAAEKLAKAQ 474198 +G++++ I I + +G+DLG+ ATLS G DQ R RA + + Sbjct: 7 QGDYYIGIHINVETPPPEDEHGWIGVDLGIASIATLSDGTVFSGDQIERVRARYERTRRS 66 Query: 474199 RARKHKRHIAKLHAKIANARADSQHKLALDLVRHFDYIAVGNVSAAKL-----------A 474345 RK R ++ +++ Q + + R A+ +L Sbjct: 67 LQRKGTRGAKRVLKRLSGRERRFQQAINHTISRRIVDRAIAEGKGVRLEDLSGIRKSVRV 126 Query: 474346 RTRMAKSVYDASWSSFRNTLRYKAIAHGATFEEVDESGSTQSCSACGSKDSTTRPKGIAG 474525 R + ++ ++ R + YK G FE +D ++Q C CG + R Sbjct: 127 RKSQRRRIHRWAFYDLRIKIAYKCALAGVPFELIDPRYTSQRCPVCGHTERANRKS---- 182 Query: 474526 LRVREWACSDCGVEHDRDINAALNI 474600 ++ C CG+E + D+ A+NI Sbjct: 183 --QSKFVCRSCGLEANADVVGAINI 205 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 61.6 bits (148), Expect = 7e-08 Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 1/164 (0%) Frame = -1 Query: 330354 ATKPNSVWSYDFVHDQLVDGRVLKMLCVIDEYTRECLAIEVGASLRSQDVILVLSRLMRL 330175 A +P+ +W DF + G V + +ID + + V +S+ + V+ L + + Sbjct: 126 AERPDQLWVADFTYVSTWQGFVY-VAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWA 184 Query: 330174 YGKPAFIR-SDNGAEFTAAKVMRWLRDAAIGPAFITPGNPWQNGFVESFNGKLRDELLNR 329998 I SD G+++ + L++A + + + G+ + N ES NG + E+++R Sbjct: 185 RRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHR 244 Query: 329997 EWFRSRAEAKVLIERWRQFYNERRPHSAHRYQPPATVRRAWLDS 329866 + +++RAE ++ W +YN RR + PPA +A+ S Sbjct: 245 KSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAEAEKAYYAS 288 Score = 52.4 bits (124), Expect = 5e-05 Identities = 60/234 (25%), Positives = 94/234 (40%), Gaps = 9/234 (3%) Frame = -3 Query: 327568 RQRMREIAQTRVRYGYRRVHVLLKREGWRVSRNRVYRLDAEEQLQ--LRSKLPKR---RK 327404 R+ R + YG R+V L REG RV+R V RL A L LR K + RK Sbjct: 53 REIQRVYDENHQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRK 112 Query: 327403 MVVSR---RERCVPVRPNEVWSLDFVADQLADGTRLRALTVADIFSREALAIEVGKRLRA 327233 V + + V RP+++W DF G A + D+F+ + V + Sbjct: 113 AVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFII-DVFAGYIVGWRVSSSMET 171 Query: 327232 EDVVSVLNR-LVAQRRAPRFLFADNGSEFSGRLLDMWAYHYKVQIDFSRPGKPTDNSFIE 327056 V+ L + L A+R + +D GS++ + G DN+ E Sbjct: 172 TFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAE 231 Query: 327055 TFNGSFRDECLNLHWFESLAEAKREIEAWRRDYNETRPHMALKELTPGEFARQY 326894 + NG ++ E ++ +++ AE + W YN R L P E + Y Sbjct: 232 SINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAEAEKAY 285 >ref|YP_025041.1|putative transposase B Length = 280 Score = 60.5 bits (145), Expect = 2e-07 Identities = 69/268 (25%), Positives = 113/268 (42%), Gaps = 27/268 (10%) Frame = -3 Query: 327637 CRLVKQARSTHY-YRSVKDPQTA-----LRQR-MREIAQTRVRYGYRRVHVLLKRE---- 327491 CR++ +R+ +Y YRS K + L+QR +R A+ + RYG ++H L E Sbjct: 2 CRILGVSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQPL 61 Query: 327490 GWRVSRNRVYRLDAEEQLQLRSKLPKRRKMVVSRRERCVPVRPN------------EVWS 327347 R S R+ RL E L + S + K + + + V RPN + W+ Sbjct: 62 QLRCSPRRISRLMKE--LDIHSVTVNKWKAASASKTK-VEQRPNLLKQDFSTTGLNQKWT 118 Query: 327346 LDFVADQLADGTRLRALTVADIFSREALAIEVGKRLRAEDVVSVLNRLVAQRR--APRFL 327173 D Q T+ D+ SR + K++ + V+ L V R + Sbjct: 119 ADMTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLII 178 Query: 327172 FADNGSEFSGRLLDMWAYHYKVQIDFSRPGKPTDNSFIETFNGSFRDECL-NLHWFESLA 326996 D GS+++ + ++ +SR G P DN+ +E+F+ S + EC+ + FE Sbjct: 179 HTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYE 238 Query: 326995 EAKREI-EAWRRDYNETRPHMALKELTP 326915 A + E YN R H +L TP Sbjct: 239 TAAAVLFEYVHAFYNRKRIHSSLGYQTP 266 Score = 53.5 bits (127), Expect = 2e-05 Identities = 65/280 (23%), Positives = 108/280 (38%), Gaps = 33/280 (11%) Frame = -1 Query: 330603 CRYLGLSRRVAIYTLKQPE------KDRSLGERLIAASQEVP-RFGYRRISAWLSL---- 330457 CR LG+SR Y + P+ +D L +R++ E R+G +I L+L Sbjct: 2 CRILGVSR-AQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQP 60 Query: 330456 -----GESRVRRM-------------WRALKLNIPKXXXXXXRCGSDIRLPGATKPNSVW 330331 R+ R+ W+A + K D G N W Sbjct: 61 LQLRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGL---NQKW 117 Query: 330330 SYDFVHDQLVDGRVLKMLCVIDEYTRECLAIEVGASLRSQDVILVLSRLM--RLYGKPAF 330157 + D + Q + ++D ++R + + + V+ L + R Sbjct: 118 TADMTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLI 177 Query: 330156 IRSDNGAEFTAAKVMRWLRDAAIGPAFITPGNPWQNGFVESFNGKLRDELLNREWFRSRA 329977 I +D G+++T+ + L + I ++ G P+ N +ESF+ L+ E + Sbjct: 178 IHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDY 237 Query: 329976 E--AKVLIERWRQFYNERRPHSAHRYQPPATVRRAWLDSE 329863 E A VL E FYN +R HS+ YQ P V A L S+ Sbjct: 238 ETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQVEIATLTSQ 277 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 60.1 bits (144), Expect = 2e-07 Identities = 32/89 (35%), Positives = 54/89 (60%) Frame = -2 Query: 462518 AAKLADIVSVTATKYSLPPALVYAIISIESRFQEKARGQHGATGLMQVVPSAHRGMLRNV 462339 + K + ++ A+KY++ PAL+ A+I ES F KAR GA GLMQ++P+ + + V Sbjct: 1419 SGKYSSYINSAASKYNVDPALIAAVIQQESGFNAKARSGVGAMGLMQLMPATAKSL--GV 1476 Query: 462338 KDLTEPNANVEVGSRILSGYVKAAGGNVQ 462252 + +P NV G++ L+ ++ GGNV+ Sbjct: 1477 NNAYDPYQNVMGGTKYLAQQLEKFGGNVE 1505 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 59.7 bits (143), Expect = 3e-07 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 5/159 (3%) Frame = -1 Query: 330354 ATKPNSVWSYDFVHDQLVDGRVLKMLCVIDEYTRECLAIEVGASLRSQDVILVLSRLM-- 330181 A +PN +W DF + G L + VID + R + V +S+ + V+ L + + Sbjct: 107 ADRPNQLWVSDFTYVSTWQGW-LYVAFVIDVFARRIVGWRVSSSMTTDFVLDALEQALYA 165 Query: 330180 RLYGKPAFI--RSDNGAEFTAAKVMRWLRDAAIGPAFITPGNPWQNGFVESFNGKLRDEL 330007 R G+ + SD G+++ + + L +A I P+ + G+ + N E+ NG + EL Sbjct: 166 RQPGEDGTLIHHSDRGSQYVSIRYSERLAEAGIEPSVGSRGDSYDNALAETINGLYKTEL 225 Query: 330006 LNREW-FRSRAEAKVLIERWRQFYNERRPHSAHRYQPPA 329893 ++R +++R ++ W +YN R Y PPA Sbjct: 226 IHRRAPWKTRESVELATLEWVAWYNHHRLMEPLGYIPPA 264 Score = 43.9 bits (102), Expect = 0.016 Identities = 62/257 (24%), Positives = 103/257 (40%), Gaps = 22/257 (8%) Frame = -3 Query: 327571 LRQRMREIAQTRVR-YGYRRVHVLLKREGWRVSRNRVYRLDAEEQLQLRSKLPKRRKMV- 327398 L+ ++ + Q ++ YG +V + REG V+R V RL + L+ + + R + Sbjct: 31 LQPEIKRVWQANMQVYGVPKVWKQMNREGITVARCTVGRLMKLQGLRGAVRGKRVRTTIT 90 Query: 327397 ----------VSRRERCVPVRPNEVWSLDFVADQLADGTRLRALTVADIFSREALAIEVG 327248 V+R+ + RPN++W DF G L V D+F+R + V Sbjct: 91 DVTAPRPLDRVNRQFKAD--RPNQLWVSDFTYVSTWQGW-LYVAFVIDVFARRIVGWRVS 147 Query: 327247 KRLRAEDVVSVLNRLVAQRRAPR----FLFADNGSEFSGRLLDMWAYHYKVQIDFSRPGK 327080 + + V+ L + + R+ +D GS++ ++ G Sbjct: 148 SSMTTDFVLDALEQALYARQPGEDGTLIHHSDRGSQYVSIRYSERLAEAGIEPSVGSRGD 207 Query: 327079 PTDNSFIETFNGSFRDECLNLH--W--FESLAEAKREIEAWRRDYNETRPHMALKELTPG 326912 DN+ ET NG ++ E ++ W ES+ A E AW YN R L + P Sbjct: 208 SYDNALAETINGLYKTELIHRRAPWKTRESVELATLEWVAW---YNHHRLMEPLGYIPPA 264 Query: 326911 EFARQY--SLRPTAEGS 326867 E Y LR A+ S Sbjct: 265 EAEANYYRQLRNAADVS 281 Score = 42.4 bits (98), Expect = 0.047 Identities = 57/209 (27%), Positives = 80/209 (38%), Gaps = 16/209 (7%) Frame = +2 Query: 324728 RRARVTNDAGLVEEIQ-AHVAHLPTYGYRRVWALLRRSREQSGAPCINVKR--VYRVMRE 324898 R AR D L EI+ A++ YG +VW + R I V R V R+M+ Sbjct: 21 RCARAKRDELLQPEIKRVWQANMQVYGVPKVWKQMNREG-------ITVARCTVGRLMKL 73 Query: 324899 HQL--LLRRPGVR---------RDKRRHDGRVAVDRSNTRWCSDGFEFRCDDGTPLRVTF 325045 L +R VR R R + + DR N W SD F + L V F Sbjct: 74 QGLRGAVRGKRVRTTITDVTAPRPLDRVNRQFKADRPNQLWVSD-FTYVSTWQGWLYVAF 132 Query: 325046 ALDCCDREAISWAATTGGHSGDVVRDVMLAAVEQRFGTTQAAQPIEWL--TDNGSAYIDH 325219 +D R + W S + D +L A+EQ Q + + +D GS Y+ Sbjct: 133 VIDVFARRIVGWRV-----SSSMTTDFVLDALEQALYARQPGEDGTLIHHSDRGSQYVSI 187 Query: 325220 RTRSFARELGLEPLTTPVRSPQSNGMAES 325306 R E G+EP N +AE+ Sbjct: 188 RYSERLAEAGIEPSVGSRGDSYDNALAET 216 >ref|NP_817650.1|gp61 Length = 274 Score = 55.8 bits (133), Expect = 4e-06 Identities = 57/233 (24%), Positives = 101/233 (43%) Frame = +3 Query: 404892 GHGTPVVFSHGWPLTSDAWDAQMLFFGRRGYRVIAHDRRGHGRSAQPWDGNDMDTYXXXX 405071 G G P+VF HG +++ A++ ++ +RG+ V A D HGR+ G+ ++ Sbjct: 22 GTGVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFGHTVEEMTRVT 81 Query: 405072 XXXXXXXXVRGAMLVGHSTGGGEVAHYIGRHGTARVAKVVLIGAVPPIMLKTEANPGGLP 405251 + A+ VGHS GGG VA R+ +A ++L A + AN P Sbjct: 82 LRALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILLDAAAGK---EHHANLKD-P 137 Query: 405252 MEVFDGIREGVLKNRSQFYRDLAVPFHNFNREGATVSQGTIDSFWSQGMMGSIKGQFDCI 405431 + + V+ Y+ + + EG ++Q SF ++ + + Sbjct: 138 LRATQRLSGAVVDVLGDTYQAIKL---RSATEGLGLAQTLRSSF---AGFRFVRAAYALL 191 Query: 405432 REFSEVDYTEDLRKINVPVLVLHGDDDQIVPIDASARRTAAIAPNVTLKVYPG 405590 + +E + ++ ++V V+HG DQIVP +A ++AA A L G Sbjct: 192 KADTE-PLLKAMKALDVQTAVIHGLSDQIVPF--AAGKSAAEASGGALYAVEG 241 Score = 47.8 bits (112), Expect = 0.001 Identities = 45/157 (28%), Positives = 65/157 (41%) Frame = -3 Query: 4690 VLVHGAWHGAWCYAHVAAALAARGYLSIARDLPAHGIHARFPASYLARPLDKDAFGAEPS 4511 V +HG A Y + LA RG+ A D HG P + Sbjct: 28 VFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFGH--------------- 72 Query: 4510 PVANTTLDDYATQVMQAVDDAYALGRGKVVLVGHSMGGLAITAAAERAPEKIAKIVYLAA 4331 T+++ ++A+D ALG + V VGHSMGG + A R PE++ LAA Sbjct: 73 -----TVEEMTRVTLRALD---ALGIDQAVFVGHSMGGGMVAEIAPRYPERV-----LAA 119 Query: 4330 FMPASGVPGLDYVRAPENKGELLGPLMLASPRVAGAL 4220 + LD E+ L PL A+ R++GA+ Sbjct: 120 IL-------LDAAAGKEHHANLKDPLR-ATQRLSGAV 148 >ref|NP_818251.1|gp200 Length = 113 Score = 53.5 bits (127), Expect = 2e-05 Identities = 27/65 (41%), Positives = 40/65 (61%) Frame = -3 Query: 350296 VEINPADLRIDTFRASGAGGQHINKTDSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVL 350117 + + AD ++T R G GGQ+ N D+AVR+ H P+G V E Q++RSQ +NK A + + Sbjct: 2 LSVTLADCVVETKRGHGNGGQNRNTRDTAVRIVHPPSGAVGESQEERSQLQNKKTAFRRM 61 Query: 350116 AARIK 350102 A K Sbjct: 62 AESSK 66 >ref|NP_818239.1|gp188 Length = 318 Score = 53.1 bits (126), Expect = 3e-05 Identities = 65/266 (24%), Positives = 103/266 (38%), Gaps = 24/266 (9%) Frame = -1 Query: 630969 LDYAFDLID---RQSSGNLAAFIAEPILSSGGII--ELPNGYMAAL-------------- 630847 ++YA LID R + +L AE +G + + PN + +L Sbjct: 67 VEYARKLIDSLERPDADSLRVLYAEGGRDAGAVAFTQFPNWSLVSLIDREGRLVAPEVVL 126 Query: 630846 --KRKCEERGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAMVTSA 630673 + + G ++ DE+ TG GR G ++ Q G TPD + G GL L ++ A Sbjct: 127 DEVDRATKSGRTVVADESATGFGRLGRIWGHQAYGFTPDAIIFGGPAGGGLTLGGVIGPA 186 Query: 630672 AIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLV---ARANTMGERLRRGLLDL 630502 + + A F PL A G L + + L T GERLR L Sbjct: 187 ELLDDA------FVGPMAGAPLACATGAATLAAINPELLEHVREEGVTFGERLRA----L 236 Query: 630501 MERFDCIGDXXXXXXXXXVEIVKDRRTKEPADGLGAKITRECMKLGLSMNIVQLPGMGGV 630322 ++RF GD + D R+ + L K + GL + P +G Sbjct: 237 VDRF---GDYLADTAGSGLYHTLDFRSPQ----LARKFEVSTRQHGL----LTAPPVGST 285 Query: 630321 FRIAPPLTVSDEEIDLGLSLLEQAIE 630244 + P L S+ E+ G+ L+ + +E Sbjct: 286 VVVTPTLIASERELARGVELIAETLE 311 Score = 41.6 bits (96), Expect = 0.080 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 5/77 (6%) Frame = -1 Query: 631461 EPMIVERAKGSFVYDADGRAILDFTSGQMSAVLGHSHPEIVSVIGEYAGKLDHLF----- 631297 +P+ ++RA +V+D +LDFT+ + A +GH+HP +++ I E+ LD+ Sbjct: 4 DPIAIQRADLHYVFDQYNTQLLDFTA--LQAPIGHNHPWVLTAIREH---LDYYVRTGPA 58 Query: 631296 SGMLSRPVVELATRLAD 631246 SG ++R VE A +L D Sbjct: 59 SGHVARWPVEYARKLID 75 >ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase Length = 320 Score = 52.8 bits (125), Expect = 3e-05 Identities = 62/242 (25%), Positives = 102/242 (42%), Gaps = 9/242 (3%) Frame = -3 Query: 151852 MILVTGGAGFIGANFVLDWLRASDEAVLNVDKLTYAGNLRTLQSLDGNPKHVFVRVDICD 151673 MIL+TG GFIG+ +L L +D+ V +K ++ N+ +D ++VFV D+ D Sbjct: 1 MILITGCTGFIGSQ-LLKRLN-NDKVVCVANKDHFSNNI-----VDSAAEYVFV--DLTD 51 Query: 151672 RDALDALLAEHKPRAVLHFAAESHVDRSIHGPADFVQTNVVGTFTLLEATRQYWNGLNDA 151493 R+ + LL + KP V++ A+++ V S + + + EA Sbjct: 52 REKVRDLLRKVKPDLVINLASKTPVRLSYEDTSFMNNAIIAYNIAMAEAP---------- 101 Query: 151492 DKAAFRFLHVSTDEVFGSLSATDPQFSETTPYAPNSPYSATKAGSDHLVRAYH------- 151334 +H ST EV+ E P SPY+ +K S+ L+ Sbjct: 102 ------LIHASTAEVYPYTPYPHYYKEEEVYRTPTSPYAVSKIASEMLLAGRKEKTIILR 155 Query: 151333 --HTYGLPVLTTNCSNNYGPYQFPEKLIPLMIANALAGKPLPVYGDGQNVRDWLYVGDHC 151160 +T G P+ + Y F EK + M++ A K + G + R W+Y DH Sbjct: 156 PINTIGRPI--SRLPEEARGYFF-EKTVLAMLSGA---KEIHYDGHPLSSRQWMYWEDHV 209 Query: 151159 SA 151154 +A Sbjct: 210 NA 211 >ref|NP_944326.1|gp18 Length = 698 Score = 50.1 bits (118), Expect = 2e-04 Identities = 31/99 (31%), Positives = 45/99 (45%) Frame = -1 Query: 468723 SAKAIVRDGRSVLFLRNPRDEWELPGGWPEAGESLEDAVIREVQEECGIVASAIRYVGSR 468544 +A + R G VL ++ P +W LP G E GE+ E+A RE EE G + G Sbjct: 580 AAGIVFRAGDKVLLMKRPAGDWGLPAGKVEDGETPEEAARRETLEETG-------HAGDY 632 Query: 468543 SCEVVPGKRVLIVCFRCEVDRREIVLSDEHHQFGWIDLD 468427 + F +V+ ++ L+DEH F W D D Sbjct: 633 VLAPLGKYDEFFHAFVADVNPFDVELNDEHTAFDWFDPD 671 >ref|NP_620626.1|putative transposase Length = 362 Score = 48.9 bits (115), Expect = 5e-04 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 17/156 (10%) Frame = +1 Query: 325849 YQYTAIDDCSRFRVLAVYPRRNARNTLFFLDRVIEEMP----FPIQRIQTDRGGEFFAE- 326013 Y Y ID+ +R + VY + + N + + + I + I RI+TD G EF Sbjct: 206 YVYDFIDEKTRLALGYVYDKLSTDNAIDAVKKAISDFKNIFGIIITRIRTDNGSEFINNY 265 Query: 326014 ------SVQRR-----LMNECIKFRPIPPRSPHLNGKVERSQLTDLNEFWFHHAPTER-A 326157 SV++ L ++ I + P RSP NGK+ER F F + Sbjct: 266 RNNQKISVKKTNFTQFLTDKNILHQTTPVRSPQSNGKIERFHQNYTKLFVFEEKILNAVS 325 Query: 326158 IDLRIEEWQFDYNWRRPHGSLGGKTPVDRIAELGEI 326265 + ++ ++ + YN+ R H SL +TP + + L I Sbjct: 326 LQNKLNDYYYFYNFERVHKSLNFQTPFNFLNSLSLI 361 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 48.5 bits (114), Expect = 7e-04 Identities = 69/298 (23%), Positives = 115/298 (38%), Gaps = 19/298 (6%) Frame = -3 Query: 327730 GYRHKKVAAPALKRQAVSYIVDHYGLPTQRACRLVKQARSTHYYRSVKDPQ-----TALR 327566 GYR V P + + + HY P C + RS++ Y + + LR Sbjct: 4 GYRALDVRLPE-QFSIIGKLRAHY--PVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLR 60 Query: 327565 QRMREI-AQTRVRYGYRRVHVLLKREGWRVSRNRVYRLDAEEQLQLRSKLPKRRKMVVSR 327389 ++ E+ + G R + + R G+++ R RL E L + + P R Sbjct: 61 SQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGL-VSCQQPTHRYKRGGH 119 Query: 327388 RERCVP---------VRPNEVWSLDFVADQLADGTRLRALTVA-DIFSREALAIEVGKRL 327239 +P PN+VW D + G R L V D+F+R+ + + Sbjct: 120 EHVAIPNYLERQFAVTEPNQVWCGDVT--YIWTGKRWAYLAVVLDLFARKPVGWAMSFSP 177 Query: 327238 RAEDVVSVLNRLVAQRRAPR--FLFADNGSEFSGRLLDMWAYHYKVQIDFSRPGKPTDNS 327065 + + L R P +D GS ++ R + Y+++ SR G DNS Sbjct: 178 DSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNS 237 Query: 327064 FIETFNGSFRDECLNLHWFESLAEAKREIEAWRRD-YNETRPHMALKELTPGEFARQY 326894 +E F S ++E + + + S +EA I + Y+ RPH L P E +Y Sbjct: 238 PMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRY 295 Score = 46.6 bits (109), Expect = 0.002 Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 4/169 (2%) Frame = -1 Query: 330351 TKPNSVWSYDFVHDQLVDGRVLKMLCVIDEYTRECLAIEVGASLRSQDVILVLSRLMRLY 330172 T+PN VW D + R + V+D + R+ + + S S+ + L Sbjct: 135 TEPNQVWCGDVTYIW-TGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETR 193 Query: 330171 GKPAFI--RSDNGAEFTAAKVMRWLRDAAIGPAFITPGNPWQNGFVESFNGKLRDELLNR 329998 GKP + SD G+ +T+ + + L I + GN W N +E F L++E + Sbjct: 194 GKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPV 253 Query: 329997 EWFRSRAEAKVLIERW-RQFYNERRPHSAHRYQPP-ATVRRAWLDSENI 329857 + S +EA I + +Y+ RPH + PP + R W +S ++ Sbjct: 254 VGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSV 302 >ref|NP_818575.1|gp37 Length = 346 Score = 48.1 bits (113), Expect = 9e-04 Identities = 55/185 (29%), Positives = 79/185 (42%), Gaps = 12/185 (6%) Frame = -1 Query: 168168 NIVNQVTGTLGSGNPTGALSNAVNTITGTLGNVGGAGSPLAPVQGVVTQLAGTLGNGDPA 167989 N++ Q TG SG+ GA++ +N + + N GAG + V+TQL T GNG A Sbjct: 59 NLLGQSTG---SGSGVGAVALLLNAVA--IANASGAG-----LGTVITQLIAT-GNGSAA 107 Query: 167988 GALTNALNSVTGALSGANPLAPVQGVVNQVVGTLSGAGGGS------PITPITN---LVN 167836 GA A ++TGA +G+ A ++ ++ G G + P TP+T+ Sbjct: 108 GAGLVAATALTGAGNGSGSTAVSTQMLANMIAAAEGTGTATGFMTIPPQTPVTDQRTTAG 167 Query: 167835 GLQNALPGGNPAGALTGALGSVTGALGNLGGTNPLAPVQGVV-NQVVGTL--GGSNPAGT 167665 LP + + G G GG PLA G N GTL G P GT Sbjct: 168 TFTINLPWWAMIPGVLVDYILLGGGRGGRGGGWPLAGGGGAAGNWATGTLTYGNEIPNGT 227 Query: 167664 LSNVV 167650 V+ Sbjct: 228 TQLVI 232 >ref|YP_024421.1|Hypothetical protein Length = 741 Score = 46.6 bits (109), Expect = 0.002 Identities = 64/274 (23%), Positives = 87/274 (31%), Gaps = 8/274 (2%) Frame = -2 Query: 375002 QTCFTGSNGAVGRVNPGGTQNQAGDGSGTYSVVAGCNSNG-NGWTGVTVYGSFAQATGNG 374826 Q C G G GR GG + G G G ++V+ +SN G T V G N Sbjct: 504 QGCGGGGGGGSGR-TAGGNDSIGGGGGGGAALVSVLSSNAIGGQTATIVVGGGGGGAANR 562 Query: 374825 AVATGMQSSAGLWGVXXXXXXXXXXXXXXXXXXXXXXXALNSVAIGGAGGDGTTPLSQAN 374646 A+A G ++ + G A GG GG N Sbjct: 563 AIAAGNGGNSSVSGAGIVGLSWTGGRAGANGVQ-------GYYASGGNGG---------N 606 Query: 374645 STLASGAGSIAIGSNATKGAQSAASDGIAIGG---QSSVASTATSGIAVGRGATVNGAYG 374475 ++ GAG+ A NA G G G +S + +G+ G A G Sbjct: 607 NSSNVGAGAGASSGNAASGVSGGGGGGTGPGNGGWRSGNGGGSNAGVGTSNGNNAQAAGG 666 Query: 374474 IAQGDGVV---SGATGRNVXXXXXXXXXXXXXXXXXXXXXXXGQVATGDGAVAIG-DPNS 374307 G+ V + A G+ GDG + G + Sbjct: 667 GGGGNSAVWWDNAAAGKG-----------------------------GDGTASSGASGGN 697 Query: 374306 ATGTGALAIGANDTSNGSGAIALGNSNSASGTGS 374205 ATG G G S G+ + G SA G GS Sbjct: 698 ATGNGN---GGGGGSGGTSILGNGTDGSAGGNGS 728 >ref|NP_919008.1|conserved hypothetical protein Length = 719 Score = 45.4 bits (106), Expect = 0.006 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = -1 Query: 311808 DRVRTALATIP-ADDYTTWVDMAFAVKHGLG--EAGFELWDAWSQTAPNCD 311665 D + L +P ADDY TWV++ A+ H E G ELW WS+TA N D Sbjct: 246 DELHAKLLLVPDADDYETWVNVGMALFHQYDGHERGLELWHEWSETADNYD 296 >ref|NP_042036.1|DNA primase Length = 777 Score = 45.1 bits (105), Expect = 0.007 Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 5/179 (2%) Frame = -1 Query: 311247 QISTLELIDCEGRKSSLXXXXXXXGWWSVTPEQCRRDACLPVLIAEGVATAVSAWQATGW 311068 ++ L+LI +GRK +L ++ + + A + IAEG ATA++ TG Sbjct: 172 ELVNLQLISADGRKRTLKGGQVRGTCHTL---EGQNQAGKRLWIAEGYATALTVHHLTGE 228 Query: 311067 YTLAALSSGNLSKVATVWRAQHPKDVLVILADFGAGFTXXXXXXXXXXXRLVAPRFASGA 310888 + ALSS NL +A++ R +HP +V+ AD A G Sbjct: 229 TVMVALSSVNLLSLASLARQKHPACQIVLAAD-------RDLSGDGQKKAAAAADACEGV 281 Query: 310887 HIADQLPTDFNDMAVLDGTEAVGELLRRAV---LETP--TPASADSKASRTQTEGMSFY 310726 + D+ND G EA + + A+ E+P T + A+ A T + M Y Sbjct: 282 VALPPVFGDWNDAFTQYGGEATRKAIYDAIRPPAESPFDTMSEAEFSAMSTSEKAMRIY 340 >ref|NP_690787.1|immunity repressor Length = 144 Score = 44.7 bits (104), Expect = 0.009 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Frame = -2 Query: 426896 LGEKIRAERKRLKLTLDALAEKTESSKSYIWELENRPVVRPSADKISKIAAVLGVTVEFL 426717 +G++I+A RK KLT LAEK S+SY+ ++E R PS + +A LG+ V + Sbjct: 3 VGQRIKAIRKERKLTQVQLAEKANLSRSYLADIE-RDRYNPSLSTLEAVAGALGIQVSAI 61 Query: 426716 LDDE---KQEASQSDVDE 426672 + +E K+E ++ + E Sbjct: 62 VGEETLIKEEQAEYNSKE 79 >ref|YP_024873.1|nudix hydrolase motif containing protein Length = 578 Score = 44.3 bits (103), Expect = 0.012 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = -1 Query: 468690 VLFLRNPRDEWELPGGWPEAGESLEDAVIREVQEECGI-VASAIRYVGSRSCEVVPGKRV 468514 VL L P W LP G E GE+ EDA RE EE G +R +G + + Sbjct: 61 VLLLCRPDGTWGLPAGSIEEGETPEDAARRETCEETGYRPLMPLRNIGQ-------FENL 113 Query: 468513 LIVCFRCEVDRREIVLSDEHHQFGWIDLD 468427 RCE+ + L+DEH +GW D++ Sbjct: 114 RAYTTRCEM--FPVCLNDEHAGYGWFDIN 140 >ref|NP_705643.1|gp17 Length = 695 Score = 43.9 bits (102), Expect = 0.016 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 2/96 (2%) Frame = -1 Query: 468708 VRDGRSVLFLRNPRDEWELPGGWPEAGESLEDAVIREVQEECGIVASAIRYVGSRSCEVV 468529 V DG+ VL ++ P +W LP G E E+ E+A RE +EE G E+V Sbjct: 583 VVDGK-VLLMKRPAGDWGLPAGKVEGNETPEEAARRETREETGY---------DHDGELV 632 Query: 468528 P-GK-RVLIVCFRCEVDRREIVLSDEHHQFGWIDLD 468427 P GK F ++ ++ L+DEH F W + D Sbjct: 633 PLGKFDGFFHAFVAHLEPFDVELNDEHTAFDWFNPD 668 >ref|NP_958122.1|gp17 Length = 694 Score = 43.9 bits (102), Expect = 0.016 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 2/96 (2%) Frame = -1 Query: 468708 VRDGRSVLFLRNPRDEWELPGGWPEAGESLEDAVIREVQEECGIVASAIRYVGSRSCEVV 468529 V DG+ VL ++ P +W LP G E E+ E+A RE +EE G E+V Sbjct: 582 VVDGK-VLLMKRPAGDWGLPAGKVEGNETPEEAARRETREETGY---------DHDGELV 631 Query: 468528 P-GK-RVLIVCFRCEVDRREIVLSDEHHQFGWIDLD 468427 P GK F ++ ++ L+DEH F W + D Sbjct: 632 PLGKFDGFFHAFVAHLEPFDVELNDEHTAFDWFNPD 667 >ref|NP_150136.1|repressor protein Length = 120 Score = 43.1 bits (100), Expect = 0.027 Identities = 24/76 (31%), Positives = 43/76 (56%) Frame = -2 Query: 426890 EKIRAERKRLKLTLDALAEKTESSKSYIWELENRPVVRPSADKISKIAAVLGVTVEFLLD 426711 EKI++ K+ ++L+ L ++ K+YI+ L+N+ PSA+ ISKIA V+ ++LL Sbjct: 6 EKIKSLAKKQGISLNTLEDRVGLGKNYIYSLKNKKT--PSAEHISKIADYFNVSTDYLLG 63 Query: 426710 DEKQEASQSDVDEAFF 426663 + ++ FF Sbjct: 64 RTDNPTIANKKEQFFF 79 >ref|YP_024964.1|putative prophage repressor protein Length = 244 Score = 43.1 bits (100), Expect = 0.027 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 2/106 (1%) Frame = -1 Query: 82956 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLFSES 82777 R++ LRK KG TL LAD G++++ +S+ E G S P + L+K L+ VE L + Sbjct: 10 RIRELRKAKGLTLQQLADVFGISRASVSEWESGRSKPDANKLVLLAKELHTAVEYLLNGD 69 Query: 82776 RNRELITVTRAGERTAMGAAADSHAHRFESIAAGVA--PKKMLPFV 82645 N + A R + A ++ + + P LP + Sbjct: 70 TNDAMSFADSAASRRRLRGGTKQSASIVDNSESNITEWPVGKLPLI 115 >ref|NP_046617.1|putative SPbeta phage repressor Length = 108 Score = 43.1 bits (100), Expect = 0.027 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Frame = -2 Query: 300656 FSLRLKQERRRLQMNQAEFGEAGGVRKQAQSNYEQGSRIPDASYLTRLAEI-GVDVQYLL 300480 F RLK+ R +Q + G+ +Q YE G PD LT+L+ I GV +LL Sbjct: 2 FGERLKKCRTSKGYSQQRMADFLGITRQGYGKYEIGKAEPDLKTLTKLSNILGVSTDFLL 61 Query: 300479 TGRPSDPGTLALTGDEELLLAGFRELKPRER 300387 G + + D E L+AG+ + E+ Sbjct: 62 KGTHAQFDLDEILNDPETLIAGYNGMISEEQ 92 >ref|YP_164732.1|orf97 Length = 2112 Score = 42.7 bits (99), Expect = 0.036 Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 17/179 (9%) Frame = +1 Query: 168001 VAQRAGELRHDALHRRERAACTADVAQRAGDRVDRVAQCAGRVAA------------TER 168144 VA +A +A + +A TA+ AQ AGD RVA A + A+ ++ Sbjct: 694 VASQATTTGDNASYAAAQALATANQAQTAGDSATRVANNASQAASGAVIAGSTASVNADK 753 Query: 168145 ARDLVHDVLDRGDRVRAAAEVAQDAGYGAEGAGQCASGVA--PADAAQCARHRAERASQG 168318 A + + GD A A A GA AG A+ +A + A A+ + A+ Sbjct: 754 AVSVANQAKSAGDNATRVANNASQAASGAILAGSTATVIANKASTVANEAKSAGDNATSV 813 Query: 168319 AGRITA-ANTAQCTRHR--AERAGQCAGRIAAANATQCTRHRAERAGQCAGRITTANTA 168486 A T+ AN+A+ T A + A + A Q T A Q G +A A Sbjct: 814 ANNATSVANSAKSTADSTYAYANSEIAVQSTAITKAQSTADNAFSQAQAVGSQASAEIA 872 >ref|NP_835729.1|hypothetical protein Length = 282 Score = 42.7 bits (99), Expect = 0.036 Identities = 37/141 (26%), Positives = 65/141 (46%) Frame = +1 Query: 370219 DDRPVEVDVDSEVIELLADDRPVEVEVDSDVIELLADDKPVEVEVESDVIELLADDRPVE 370398 +D +E+D+D E +EL DD ++++V+ + +D +E E+E +L D+ E Sbjct: 110 EDEDLELDLDEEDLELDLDDEDIKIDVED-----VDEDGELEAEIELKDADLSDDE---E 161 Query: 370399 VEVDSDVIELLADERPVEVEVESDVMELLADDKPVDVEVDSEVIELLADDRPVEVEVESD 370578 +++D D+ + E V E D++ L +E E IELL E E ++ Sbjct: 162 LDIDVDIKGAVESEE--HVREEMDLLHTL-------LERVEEAIELLRKVAGEETEEMAE 212 Query: 370579 VIELLADERPVEVEVESDVIE 370641 R E V+ VI+ Sbjct: 213 AASCPTPRRMRESRVKKPVID 233 Score = 41.2 bits (95), Expect = 0.10 Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 9/156 (5%) Frame = +1 Query: 369733 EDRPVEVEVDKDVIELLADDRPVEVEVDSDVIELLADDRPVEVDVESEVIELLADDRPVE 369912 E R + ++ + + E +D +E+++D + +EL DD +++DVE + +D +E Sbjct: 92 EMREAKHKMKRRITEAEHEDEDLELDLDEEDLELDLDDEDIKIDVED-----VDEDGELE 146 Query: 369913 VDVESEVIELFADERPVEVEVDSEVIELLADDRPVEVEVE---------SDVIELLADDR 370065 ++E + +L DE E+++D ++ + + V E++ + IELL Sbjct: 147 AEIELKDADLSDDE---ELDIDVDIKGAVESEEHVREEMDLLHTLLERVEEAIELLRKVA 203 Query: 370066 PVEVDVDSESIELLADDRPVEVEVDSEVIELLADDR 370173 E + +E+ R E V VI+ + R Sbjct: 204 GEETEEMAEAASCPTPRRMRESRVKKPVIDEVTRQR 239 >ref|NP_817697.1|gp19 Length = 750 Score = 41.6 bits (96), Expect = 0.080 Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 9/179 (5%) Frame = -1 Query: 168147 GTLGSGNPTGAL-SNAVNTITGTLGNV-GGAGSPLAPVQGVVTQLAGTLGNGDPAGALTN 167974 G G T L ++ V T+ G LG + GG + + +A T+G PA + Sbjct: 525 GGRGQTGDTARLGTDEVRTVDGGLGGIDGGYNAVQLDPASIPDTVACTIG---PAASTPG 581 Query: 167973 ALNSVTGALSGANPLAPVQGVVNQVVGTLS-------GAGGGSPITPITNLVNGLQNALP 167815 VT S A + P G ++ VG L+ G GGS N + P Sbjct: 582 TTGGVTSFGSLAQSV-PGIGAISNGVGFLASASKPGRGGDGGSAFMSRANSTT--YTSSP 638 Query: 167814 GGNPAGALTGALGSVTGALGNLGGTNPLAPVQGVVNQVVGTLGGSNPAGTLSNVVGTAT 167638 G G+ A G+ A G GG AP+ G + G GG+ G N GT T Sbjct: 639 GKAGEGSALAAGGAPGAANGGTGGAGATAPMAG--ERKAGGGGGAGGGGRAGNQSGTIT 695 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 41.6 bits (96), Expect = 0.080 Identities = 52/183 (28%), Positives = 68/183 (37%), Gaps = 17/183 (9%) Frame = -3 Query: 586837 PPSPARVCPAIS*ASLRKSRPPVGRLAQRTKGPTNHRKGSPVCHEIAIQYLPGADQSVRH 586658 P P R P+ A R+ PPV R RT+ P P H A P A + + Sbjct: 54 PDHPCRRAPSRPAAGPRR-HPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEY 112 Query: 586657 ARMRRASGVE----VRPLDSRKPGTG------GPSSRLFTDVRDDGRAKLTKKSCSRQGA 586508 A R E L +R P T GP +R+ T V D R + ++ R+ Sbjct: 113 APALRPRAPECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPRRRV 172 Query: 586507 NGWRTPSWRCRTALPVH-----RLPARAGSLRAPPSPGDVSRDWASRHGARADFP--PRA 586349 + R + VH R R +RA P PG A+R R P PRA Sbjct: 173 --------QPRLGVGVHRRRGARRVGRRVRVRARPGPG------AARRPRRRPHPEHPRA 218 Query: 586348 FRP 586340 RP Sbjct: 219 VRP 221 >ref|YP_164733.1|orf98 Length = 1273 Score = 41.2 bits (95), Expect = 0.10 Identities = 74/282 (26%), Positives = 104/282 (36%), Gaps = 6/282 (2%) Frame = -1 Query: 168153 VTGTLGSGNP-TGALSNAVNTITGTLGNVGGAGSPLAPVQGVVTQLAGTLGNGDPAGALT 167977 V G+ GSG+ +G IT T G G GS L +LAG L G GA+T Sbjct: 314 VGGSGGSGSSGSGGNGTGGGGITVTGGGSSGGGSGLG-------KLAGLLVAG---GAVT 363 Query: 167976 NALNSVTGALSGANPLAP-VQGVVNQV-VGTLSGAGGGSPITPITNLVNGLQNALPGGNP 167803 A+ VT A + N + + VN + +G + G S T L N + G Sbjct: 364 GAVRGVTSANNSGNTIRESAEDSVNSIMIGEANRTGTTSKHADNTILNNLQKTGYTNGTG 423 Query: 167802 AG--ALTGALGSVTGALGNLGGTNPLAPVQGVVNQVVGTLGGSNPAGTLSNVVGTATXXX 167629 G A+TG + T + G+ LG ++ A LS T Sbjct: 424 YGTTAMTGFANAYTSSTGD----------------TKNYLGAADAASQLSRYGNMGTSST 467 Query: 167628 XXXXXXXXXXXXXXXXXXXXXPVQG-VVNQVVGTLGSGNPAGALTGALNSVTGALGNLGG 167452 +QG +VN + GS ALT + + +G + G Sbjct: 468 TSLISAIGNAGAGAGIANTTKSIQGELVNSGMTARGS-EQGQALTSMIQNQSGQSLSAGN 526 Query: 167451 SNPLAPVQGVVNQVVGTLSGAAGNNPIAPITNLVSGLTGGGN 167326 LA +QG+ + + GA G A N VS TG GN Sbjct: 527 VRDLASLQGIQAKYGSVMQGAQG----ADAYNKVS--TGLGN 562 >ref|NP_817699.1|gp21 Length = 348 Score = 40.8 bits (94), Expect = 0.14 Identities = 43/135 (31%), Positives = 56/135 (41%) Frame = +2 Query: 65477 WGLRGTEDLGGGYQAVFTLESGFNVXXXXXXXXXXXXXXXAFVGLKSGFGTLAFGRQYTM 65656 WG G GG AV+TLE G ++ A G +GF A G+ Sbjct: 209 WGEGGW----GGNWAVYTLERGVHIPWTARIITGVVGAGGA--GSAAGFNP-ARGQTGGS 261 Query: 65657 TYLALQGADIIGPDIYGLGSFDAYVPNGRADNAVTYLGTYRGVTLGAAYSFGRDGAGTGN 65836 T A G G G+G +A PNGRA + +T + + T GA + G G GN Sbjct: 262 TTAATDGWS--GTATGGVGGQNAIDPNGRAVSPLTQTVSGQTYTGGAERAAGASG-NPGN 318 Query: 65837 SPGQGTCAGQVPGDA 65881 PG G A + G A Sbjct: 319 PPGGGGAAAEFTGQA 333 >ref|NP_536425.1|putative helix-turn-helix transcriptional regulator Length = 128 Score = 40.8 bits (94), Expect = 0.14 Identities = 24/58 (41%), Positives = 36/58 (62%) Frame = -2 Query: 426884 IRAERKRLKLTLDALAEKTESSKSYIWELENRPVVRPSADKISKIAAVLGVTVEFLLD 426711 +RA R L++T DALA SK Y+ ++E R V + D +SKIA+ L V V+ L++ Sbjct: 66 VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRV-GTTDVLSKIASALAVPVDDLIE 122 >ref|NP_945111.1|gp80 Length = 128 Score = 40.8 bits (94), Expect = 0.14 Identities = 24/58 (41%), Positives = 36/58 (62%) Frame = -2 Query: 426884 IRAERKRLKLTLDALAEKTESSKSYIWELENRPVVRPSADKISKIAAVLGVTVEFLLD 426711 +RA R L++T DALA SK Y+ ++E R V + D +SKIA+ L V V+ L++ Sbjct: 66 VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRV-GTTDVLSKIASALAVPVDDLIE 122 >ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase Length = 327 Score = 40.4 bits (93), Expect = 0.18 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 3/103 (2%) Frame = +1 Query: 338257 KISIVMPTFNPPLNYIREAIDSVRNQFY--SNWELCIADDCSTDS-DARSFLTSLSALDP 338427 K+S++MPTFN + I SV NQ +++EL I DD S D+ + + + L Sbjct: 3 KVSVIMPTFNNG-EKLHRTISSVLNQTMKSTDYELIIIDDHSNDNGETLNVIKKYKGL-V 60 Query: 338428 RIKVHLRDSNGHIXXXXXXXXXXXRGHFVALLDQDDLLPKHAL 338556 R K L+ ++G+ + +V LD DDLL + AL Sbjct: 61 RFK-QLKKNSGNASVPRNTGLKMSKAEYVFFLDSDDLLHERAL 102 >ref|NP_542287.1|unknown Length = 224 Score = 40.4 bits (93), Expect = 0.18 Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 4/162 (2%) Frame = +1 Query: 520876 PC*PIQQSMAMPAARRPTGCARPRGCST*S-TISTRRFARWPR---PTSATRPSSLRMQS 521043 PC P + + RPT R C++ + + ++ F RW R PTS +R ++ S Sbjct: 19 PC-PAPVIITCTSRMRPTWTRPERRCASPTRSAASPTFRRWTRSAWPTSRSRRLRSKISS 77 Query: 521044 VRELARICLAKRRPCSTGWSRGSRPTAAVAHAIRPIRSARARMCPPRSSSRTPNVAAPAR 521223 R A+ +R P WS+ S RS RAR P +S + P R Sbjct: 78 ARGPAQRSSKRRLPSIAAWSKHS------------ARSQRARSLPSKSLATAPQ----HR 121 Query: 521224 LPYSTPRTA*SMRVHSTIPTSAGPRSNGLPMASNATAKSRTN 521349 +P + RT +R+ + + G R+ +A++ +A R++ Sbjct: 122 IPLA--RTRDPIRLLPALMGACGRRARPRSIATSRSAMRRSS 161 >ref|NP_878228.1|Int Length = 326 Score = 40.4 bits (93), Expect = 0.18 Identities = 24/89 (26%), Positives = 41/89 (46%) Frame = +3 Query: 133857 STPLVSSLEEDAAGIQSTRLWRVIRRFFLLVAGAIEGEQPATAEKLRRASPHWIRHTHAT 134036 + P+ LE+ S +L++V F + ++ + P + H +RHT A+ Sbjct: 223 TVPISEELEKKVKEEASAKLFKVDYEKFCGILRRVKPDIPPNQ------ATHILRHTFAS 276 Query: 134037 HALARGAELIMVRDNLRHASISTTSTYLH 134123 H + G +I ++ L HASI T Y H Sbjct: 277 HFMMNGGNIIALQQILGHASIQQTMAYAH 305 >ref|NP_695029.1|Integrase Length = 374 Score = 40.4 bits (93), Expect = 0.18 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Frame = +3 Query: 133941 LLVAGAIEGEQPATAEKLRRASP---HWIRHTHATHALARGAELIMVRDNLRHASIS-TT 134108 ++ A++ +KL+ ++P H +RHTHA+ L G +++ V L HAS++ T Sbjct: 290 IITLSALQNTLEHALKKLKISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQ 349 Query: 134109 STYLH 134123 TY+H Sbjct: 350 QTYIH 354 >ref|NP_996675.1|integrase Length = 374 Score = 40.4 bits (93), Expect = 0.18 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Frame = +3 Query: 133941 LLVAGAIEGEQPATAEKLRRASP---HWIRHTHATHALARGAELIMVRDNLRHASIS-TT 134108 ++ A++ +KL+ ++P H +RHTHA+ L G +++ V L HAS++ T Sbjct: 290 IITLSALQNTLEHALKKLKISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQ 349 Query: 134109 STYLH 134123 TY+H Sbjct: 350 QTYIH 354 >ref|NP_839878.1|Int Length = 326 Score = 40.4 bits (93), Expect = 0.18 Identities = 24/89 (26%), Positives = 41/89 (46%) Frame = +3 Query: 133857 STPLVSSLEEDAAGIQSTRLWRVIRRFFLLVAGAIEGEQPATAEKLRRASPHWIRHTHAT 134036 + P+ LE+ S +L++V F + ++ + P + H +RHT A+ Sbjct: 223 TVPISEELEKKVKEEASAKLFKVDYEKFCGILRRVKPDIPPNQ------ATHILRHTFAS 276 Query: 134037 HALARGAELIMVRDNLRHASISTTSTYLH 134123 H + G +I ++ L HASI T Y H Sbjct: 277 HFMMNGGNIIALQQILGHASIQQTMAYAH 305 >ref|NP_944342.1|gp33 Length = 472 Score = 40.0 bits (92), Expect = 0.23 Identities = 44/157 (28%), Positives = 56/157 (35%), Gaps = 12/157 (7%) Frame = -1 Query: 168096 TITGTLGNVGGAGSPLAP------------VQGVVTQLAGTLGNGDPAGALTNALNSVTG 167953 T+T T+G G G+P P V G++ L G +G G +A + Sbjct: 319 TLTYTIGGAGNGGAPNVPGGAGGNTTITGSVSGLLLSLTGGVGGSPGVGGAYSAYTAGGN 378 Query: 167952 ALSGANPLAPVQGVVNQVVGTLSGAGGGSPITPITNLVNGLQNALPGGNPAGALTGALGS 167773 +GA Q Q VG GAGG +P V G Q GN A A G Sbjct: 379 GGAGAPAGGYGQDTGPQGVGASGGAGGSNPFGGGGTAVRGSQI----GNTMLAGLAATGY 434 Query: 167772 VTGALGNLGGTNPLAPVQGVVNQVVGTLGGSNPAGTL 167662 G G GG A + G GG+ G L Sbjct: 435 GCGG-GGCGGV--YAAGNTTIPTSTGNSGGAGTPGVL 468 >ref|NP_047971.2|gp26 Length = 174 Score = 40.0 bits (92), Expect = 0.23 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = -3 Query: 453301 IEVGSFSATGKLPTEAVLAQEFGVSRTVIREAISRLKNEGVVEPRQGS 453158 I G + KLP+E + ++ G+ RT +R+ +++L EG++E Q S Sbjct: 34 IATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGILEVHQRS 81 >ref|YP_077230.1|Hypothetical protein Length = 757 Score = 39.7 bits (91), Expect = 0.30 Identities = 46/177 (25%), Positives = 66/177 (37%), Gaps = 2/177 (1%) Frame = -1 Query: 168183 ITPIQNIVNQVTGTLGSGNP-TGALSNAVNTITGTLGNVGGAGSPLAPVQGVVTQLAGTL 168007 + ++N+VN + GNP G L+N +N++ Q V ++ L Sbjct: 121 VNNLENVVNGLDAEANGGNPYAGPLANYLNSL-------------YQQAQSVQQKIQNYL 167 Query: 168006 GNGDPAGALTNALNSVTGALSGANPLAPVQGVVNQVVGTLSGAGGGSPITPITNLVNGLQ 167827 N +G+ N+ NS + G G N G SG GGGS P + G Sbjct: 168 NN--QSGSSNNSPNSSSPGSGGGG------GSSNPNSGGGSGGGGGSSSPPNSGGGGGNN 219 Query: 167826 NALPGGNPAGALTGALGSVTGALGNLGGTNP-LAPVQGVVNQVVGTLGGSNPAGTLS 167659 N GG G+ G G T P VQ ++Q L N +G LS Sbjct: 220 NPNSGG--------------GSGGGGGSTGPNTQQVQNYISQAENDLQSGNISGALS 262 >ref|NP_064745.1|gp7 Length = 540 Score = 39.7 bits (91), Expect = 0.30 Identities = 49/184 (26%), Positives = 71/184 (38%), Gaps = 20/184 (10%) Frame = +1 Query: 168163 DVLDRGDRVRAAAEVAQDAGYGAEG----------AGQCASGVAPADAAQCARHRAERAS 168312 D L + +AAA VAQ A AE A + A+G++ AA A + AS Sbjct: 68 DYLADVEAAKAAALVAQAAAELAENNAETAEVNAEASETAAGLSATAAATSATNAG--AS 125 Query: 168313 QGAGRITAANTAQCTRHRAERAGQCAGRIAAA-----NATQCTRHRAERAGQCAGRITTA 168477 + A +A +A + A A Q A +AA NA + A A +G +TA Sbjct: 126 ETAASASATASATSATNSATSASQAATSASAAAVSEGNAATSETNAANSATSASGSASTA 185 Query: 168478 NT-----AQCACHRAEGAGQCAGRITAANATQCTRHRAKRAGQCASRIAAANATQCARHR 168642 T + A + A A A T A A+Q ++ + +AT A Sbjct: 186 TTQASAASVSATNAATSASNAATSATNAAASQAAAATSETNAAASESTVTTSATNAATSE 245 Query: 168643 AERA 168654 A A Sbjct: 246 ANAA 249 >ref|NP_817998.1|gp25 Length = 941 Score = 39.7 bits (91), Expect = 0.30 Identities = 44/164 (26%), Positives = 57/164 (34%) Frame = -1 Query: 168147 GTLGSGNPTGALSNAVNTITGTLGNVGGAGSPLAPVQGVVTQLAGTLGNGDPAGALTNAL 167968 G G+G +G SN+ G G G L PV+ + + T G G GA + Sbjct: 738 GGAGAGGGSGRRSNSGYRYGGGGGGGGAYIDVLIPVEAIGPTYSTTRGLGGAGGAKAYSG 797 Query: 167967 NSVTGALSGANPLAPVQGVVNQVVGTLSGAGGGSPITPITNLVNGLQNALPGGNPAGALT 167788 + GA GA+ V T +G GG T N + G +T Sbjct: 798 DGKDGADGGASTFTS-----GGVSLTANGGQGGKKGT------NSSSSGARGLGGTAVIT 846 Query: 167787 GALGSVTGALGNLGGTNPLAPVQGVVNQVVGTLGGSNPAGTLSN 167656 G TG G GG +P G GG G LSN Sbjct: 847 GL--DATGFSGGNGGNGGSSPTNGQSRTNGAGAGGKGGGGKLSN 888 >ref|NP_116524.1|integrase Length = 374 Score = 39.7 bits (91), Expect = 0.30 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Frame = +3 Query: 133941 LLVAGAIEGEQPATAEKLRRASP---HWIRHTHATHALARGAELIMVRDNLRHASIS-TT 134108 ++ A++ +KL ++P H +RHTHA+ L G +++ V L HAS++ T Sbjct: 290 IITLSALQNTLDHALKKLNISTPLTIHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQ 349 Query: 134109 STYLH 134123 TY+H Sbjct: 350 QTYIH 354 >ref|NP_108680.1|integrase Length = 374 Score = 39.7 bits (91), Expect = 0.30 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Frame = +3 Query: 133941 LLVAGAIEGEQPATAEKLRRASP---HWIRHTHATHALARGAELIMVRDNLRHASIS-TT 134108 ++ A++ +KL ++P H +RHTHA+ L G +++ V L HAS++ T Sbjct: 290 IITLSALQNTLDHALKKLNISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQ 349 Query: 134109 STYLH 134123 TY+H Sbjct: 350 QTYIH 354 >ref|NP_899345.1|hypothetical protein Length = 484 Score = 39.7 bits (91), Expect = 0.30 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Frame = -3 Query: 644179 HADDRTHSRIAQNGLLPQRRLTAVDRDVRGGCL-DDREHGRELMRALRHQHRDGIAHADA 644003 HAD +T RIA+ GL+ + D DVR + D E G +L + +HR A Sbjct: 268 HADWQTLVRIAEWGLMHDELIFHDDEDVRNAVIRTDYEMGEKLAESPEWEHRKQAAENGF 327 Query: 644002 GLFERGTQXXXXXXXXXXXXRTQRVDHDRRIGRAQRLRGETGRDM 643868 G+++ + D D RI A+R G GR M Sbjct: 328 GIWDLVLDSDEDVREAAWDWSFENDDADTRITYAKRYEGNFGRAM 372 >ref|NP_076573.1|integrase Length = 374 Score = 39.7 bits (91), Expect = 0.30 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Frame = +3 Query: 133941 LLVAGAIEGEQPATAEKLRRASP---HWIRHTHATHALARGAELIMVRDNLRHASIS-TT 134108 ++ A++ +KL ++P H +RHTHA+ L G +++ V L HAS++ T Sbjct: 290 IITLSALQNTLDHALKKLNISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQ 349 Query: 134109 STYLH 134123 TY+H Sbjct: 350 QTYIH 354 >ref|NP_795660.1|putative integrase Length = 362 Score = 39.3 bits (90), Expect = 0.40 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Frame = +3 Query: 133902 QSTRLWRVIRRFFLLVAGAIEGEQPATAEK--LRRASPHWIRHTHATHALARGAELIMVR 134075 QS R R F L+ + T E+ L++ +PH RHTHA+ G + + Sbjct: 267 QSVRPLHGSFRVFNLLTSTVRRRLKRTVERHHLKKINPHGFRHTHASLLFEAGVPAKLAQ 326 Query: 134076 DNLRHASIS-TTSTYLHSDEAQ 134138 + L HA IS T Y H + Q Sbjct: 327 ERLGHAKISITMDLYTHLSKNQ 348 >ref|NP_944302.1|conserved phage protein Length = 532 Score = 39.3 bits (90), Expect = 0.40 Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Frame = +2 Query: 167873 PPAPDSVPTTWFTTPCTGASGFAPLSAPVTEFSAFVSAPAGSPLPS-----VPASCVTTP 168037 PPAPD P +AP T +S P +PLP+ PA+ TP Sbjct: 74 PPAPD------------------PNAAPATTQPVDMSTPTATPLPAQQPSAAPAAAPATP 115 Query: 168038 CTGASGLPAPPTLPSVPVIVLTALLSAPVGLPLPS 168142 T + P+ P P +P + L A G P+ Sbjct: 116 TTTTTPAPSSPQTPQIPPDAMKGTLMADSGSMAPA 150 >ref|YP_025049.1|putative repressor protein Length = 257 Score = 39.3 bits (90), Expect = 0.40 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Frame = -1 Query: 82956 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERG-LSVPSIAVALKLSKALNVDVEQL 82789 R+K +RKQKG + D LA + G+++S + + E+G + I V K++ ALN+ E L Sbjct: 6 RMKTIRKQKGISADSLAAKIGVSRSTVFRYEKGDIEKVPIEVVAKVANALNIKPEVL 62 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,568,703,896 Number of Sequences: 14420 Number of extensions: 50659726 Number of successful extensions: 188941 Number of sequences better than 0.5: 62 Number of HSP's better than 0.5 without gapping: 13541 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 188392 length of database: 3,019,461 effective HSP length: 133 effective length of database: 1,101,601 effective search space used: 237414844318 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig283 (338,615 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_599056.1|bactoprenol glucosyltransferase 295 2e-78 ref|NP_720276.1|GtrB 294 3e-78 ref|YP_006358.1|GtrB 293 5e-78 ref|NP_059582.1|O-antigen conversion protein 293 5e-78 ref|NP_945090.1|gp59 293 8e-78 ref|YP_164695.1|transposase 107 7e-22 ref|NP_945089.1|gp58 100 1e-19 ref|NP_039614.1|gene IV product 95 3e-18 ref|NP_040579.1|G IV protein 91 8e-17 ref|NP_047360.1|ORF348; homologous to eryA gene product in L07626 84 6e-15 ref|NP_076827.1|Csp 84 8e-15 ref|NP_047359.1|maturation protein 84 1e-14 ref|NP_046877.1|putative non-heme haloperoxidase 83 1e-14 ref|NP_510894.1|phage assembly protein 77 9e-13 ref|NP_046572.1|ABC transporter 74 1e-11 ref|NP_040655.1|unknown protein 71 5e-11 ref|NP_817650.1|gp61 70 1e-10 ref|NP_047372.1|putative maturation protein 66 2e-09 ref|NP_818239.1|gp188 65 5e-09 ref|NP_835645.1|putative transposase 64 8e-09 ref|NP_046564.1|unknown 56 2e-06 ref|NP_705643.1|gp17 51 6e-05 ref|NP_958122.1|gp17 51 6e-05 ref|NP_047971.2|gp26 48 6e-04 ref|NP_944326.1|gp18 47 8e-04 ref|NP_542278.1|unknown 44 0.009 ref|NP_758929.1|ORF37 44 0.012 ref|YP_006601.1|Gp21 42 0.026 ref|YP_024873.1|nudix hydrolase motif containing protein 42 0.034 ref|NP_958267.1|hypothetical protein 41 0.057 ref|NP_665964.1|putative plasmid partitioning protein Soj 40 0.13 ref|NP_958295.1|hypothetical protein 40 0.13 ref|NP_817692.1|gp15 40 0.17 ref|YP_024421.1|Hypothetical protein 39 0.22 ref|NP_818617.1|gp79 39 0.37 ref|NP_861819.1|NudE nudix hydrolase 38 0.49 >ref|NP_599056.1|bactoprenol glucosyltransferase Length = 307 Score = 295 bits (755), Expect = 2e-78 Identities = 155/305 (50%), Positives = 203/305 (66%) Frame = -2 Query: 305170 VSLVVPFYNEGEAVERFFDVVIPLLSAIDAIRFEIVCVNDGSRDDTLERLVRIGAAERRV 304991 +SLVVP +NE EA+ F+ V + EIV +NDGS+D T + + ++ V Sbjct: 3 ISLVVPVFNEEEAIPVFYKTVREF-QELKPYEVEIVFINDGSKDATESIINALAVSDPLV 61 Query: 304990 RVIDLTRNFGKEAALTAGLDEAAGDAVIPLDADLQDPPSLIPVMIEHWRDGAEVVAAKRS 304811 + TRNFGKE AL AGLD A+GDAVIP+D DLQDP +IP +IE W+ GA++V AKRS Sbjct: 62 VPLSFTRNFGKEPALFAGLDHASGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRS 121 Query: 304810 NRACDSFAKRTAAALYYRVHNLLSDVKLPENVGDFRLMDRKVVNALRNLPERHRFMKGLF 304631 +R+ D KR A +Y++HN +S K+ ENVGDFRLM R+VV ++ LPER+ FMKG+ Sbjct: 122 DRSTDGRLKRKTAEWFYKLHNKISTPKIEENVGDFRLMSREVVENIKLLPERNLFMKGIL 181 Query: 304630 AWVGYKTVIVEYQRDPRSAGHSKFSGWKLWNFALEGITSFSTVPLRSWTYIGVGIAALAF 304451 +WVG +T +VEY R R AG SKF+GWKLWN ALEGITSFST PLR WTYIG+ +A+++F Sbjct: 182 SWVGGQTDVVEYVRAERVAGISKFNGWKLWNLALEGITSFSTFPLRVWTYIGLFVASISF 241 Query: 304450 VYGAFIILRTLLFGNPVLGYASLISVTLFXXXXXXXXXXXXXXXXXXXYDESKQRPVYLI 304271 +YGA++I+ TL+FGNPV GY SL+ LF Y ESK RP Y+I Sbjct: 242 LYGAWMIIDTLVFGNPVRGYPSLLVSILFLGGVQLIGIGVLGEYIGRIYIESKHRPKYII 301 Query: 304270 RRRYQ 304256 + Q Sbjct: 302 KNEKQ 306 >ref|NP_720276.1|GtrB Length = 325 Score = 294 bits (753), Expect = 3e-78 Identities = 153/307 (49%), Positives = 204/307 (66%) Frame = -2 Query: 305182 YTPLVSLVVPFYNEGEAVERFFDVVIPLLSAIDAIRFEIVCVNDGSRDDTLERLVRIGAA 305003 Y +SLVVP +NE + + F+ V + + EIV +NDGS+D T + +I A+ Sbjct: 14 YKMKISLVVPVFNEEDTIPIFYKTVREF-NELKEYEIEIVFINDGSKDATESIINKIAAS 72 Query: 305002 ERRVRVIDLTRNFGKEAALTAGLDEAAGDAVIPLDADLQDPPSLIPVMIEHWRDGAEVVA 304823 + V + TRNFGKE AL AGLD A GDAVIP+D DLQDP +IP +IE W+ GA++V Sbjct: 73 DPLVIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVL 132 Query: 304822 AKRSNRACDSFAKRTAAALYYRVHNLLSDVKLPENVGDFRLMDRKVVNALRNLPERHRFM 304643 AKRS+R+ D KR A +Y++HN +S+ K+ ENVGDFRLM R VV ++ +PER+ FM Sbjct: 133 AKRSDRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFM 192 Query: 304642 KGLFAWVGYKTVIVEYQRDPRSAGHSKFSGWKLWNFALEGITSFSTVPLRSWTYIGVGIA 304463 KG+ +WVG KT +V+Y R R AG SKF+GWKLWN ALEGITSFST PLR WTYIG+ IA Sbjct: 193 KGVLSWVGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIA 252 Query: 304462 ALAFVYGAFIILRTLLFGNPVLGYASLISVTLFXXXXXXXXXXXXXXXXXXXYDESKQRP 304283 ++F+YGA++I+ L+FGN V GY SL+ LF Y E+KQRP Sbjct: 253 GMSFLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKQRP 312 Query: 304282 VYLIRRR 304262 Y+++R+ Sbjct: 313 KYILKRK 319 >ref|YP_006358.1|GtrB Length = 310 Score = 293 bits (751), Expect = 5e-78 Identities = 152/303 (50%), Positives = 203/303 (66%) Frame = -2 Query: 305170 VSLVVPFYNEGEAVERFFDVVIPLLSAIDAIRFEIVCVNDGSRDDTLERLVRIGAAERRV 304991 +SLVVP +NE + + F+ V + + EIV +NDGS+D T + +I A++ V Sbjct: 3 ISLVVPVFNEEDTIPIFYKTVREF-NELKEYEIEIVFINDGSKDATESIINKIAASDPLV 61 Query: 304990 RVIDLTRNFGKEAALTAGLDEAAGDAVIPLDADLQDPPSLIPVMIEHWRDGAEVVAAKRS 304811 + TRNFGKE AL AGLD A GDAVIP+D DLQDP +IP +IE W+ GA++V AKRS Sbjct: 62 IPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRS 121 Query: 304810 NRACDSFAKRTAAALYYRVHNLLSDVKLPENVGDFRLMDRKVVNALRNLPERHRFMKGLF 304631 +R+ D KR A +Y++HN +S+ K+ ENVGDFRLM R VV ++ +PER+ FMKG+ Sbjct: 122 DRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFMKGVL 181 Query: 304630 AWVGYKTVIVEYQRDPRSAGHSKFSGWKLWNFALEGITSFSTVPLRSWTYIGVGIAALAF 304451 +WVG KT +V+Y R R AG SKF+GWKLWN ALEGITSFST PLR WTYIG+ IA ++F Sbjct: 182 SWVGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMSF 241 Query: 304450 VYGAFIILRTLLFGNPVLGYASLISVTLFXXXXXXXXXXXXXXXXXXXYDESKQRPVYLI 304271 +YGA++I+ L+FGN V GY SL+ LF Y E+KQRP Y++ Sbjct: 242 LYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKQRPKYIL 301 Query: 304270 RRR 304262 +R+ Sbjct: 302 KRK 304 >ref|NP_059582.1|O-antigen conversion protein Length = 310 Score = 293 bits (751), Expect = 5e-78 Identities = 152/303 (50%), Positives = 203/303 (66%) Frame = -2 Query: 305170 VSLVVPFYNEGEAVERFFDVVIPLLSAIDAIRFEIVCVNDGSRDDTLERLVRIGAAERRV 304991 +SLVVP +NE + + F+ V + + EIV +NDGS+D T + +I A++ V Sbjct: 3 ISLVVPVFNEEDTIPIFYKTVREF-NELKEYEIEIVFINDGSKDATESIINKIAASDPLV 61 Query: 304990 RVIDLTRNFGKEAALTAGLDEAAGDAVIPLDADLQDPPSLIPVMIEHWRDGAEVVAAKRS 304811 + TRNFGKE AL AGLD A GDAVIP+D DLQDP +IP +IE W+ GA++V AKRS Sbjct: 62 IPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRS 121 Query: 304810 NRACDSFAKRTAAALYYRVHNLLSDVKLPENVGDFRLMDRKVVNALRNLPERHRFMKGLF 304631 +R+ D KR A +Y++HN +S+ K+ ENVGDFRLM R VV ++ +PER+ FMKG+ Sbjct: 122 DRSTDGRMKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFMKGVL 181 Query: 304630 AWVGYKTVIVEYQRDPRSAGHSKFSGWKLWNFALEGITSFSTVPLRSWTYIGVGIAALAF 304451 +WVG KT +V+Y R R AG SKF+GWKLWN ALEGITSFST PLR WTYIG+ IA ++F Sbjct: 182 SWVGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMSF 241 Query: 304450 VYGAFIILRTLLFGNPVLGYASLISVTLFXXXXXXXXXXXXXXXXXXXYDESKQRPVYLI 304271 +YGA++I+ L+FGN V GY SL+ LF Y E+KQRP Y++ Sbjct: 242 LYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKQRPKYIL 301 Query: 304270 RRR 304262 +R+ Sbjct: 302 KRK 304 >ref|NP_945090.1|gp59 Length = 429 Score = 293 bits (749), Expect = 8e-78 Identities = 166/421 (39%), Positives = 232/421 (55%), Gaps = 3/421 (0%) Frame = +3 Query: 49830 ADTGAPGAPAVTRRGAIAAAVIGNWLEFFDFTVYGFFAVLIGKLFFXXXXXXXXXXXXVA 50009 A AP A + T R A+ A ++GN E+FDF Y FF+V+I KLFF V+ Sbjct: 7 AREAAPSASSDTHRRAVIAVIVGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLLSVS 66 Query: 50010 TFAAGFFTRPLGSVVLGVYADRKGRKAALNLTIMLMALGTGLIAIAPTYAQVGVAAPLLV 50189 T GFF RP+G +V+G AD+ GR+AAL +TI LM GT +I APTY G+ APL++ Sbjct: 67 TIGVGFFMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMI 126 Query: 50190 VFARLLQGFSQGGEFGAATSTLLEQGGTSRRGFRASWQLATQGGAALMGSGFAALLSNTM 50369 V ARLLQGFS GGE G AT+ L E+ R G+ SW A+ G A ++ S A + + Sbjct: 127 VVARLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCL 186 Query: 50370 TKDALEGWGWRLPFLVGVLIAPVGMYLRRRLADDA-PGDRHHGIERGVLRELFSKHTRXX 50546 + +E WGWR+PFL+G+ + PVG+Y+R RL D P D G E + E+ +R Sbjct: 187 DEQQIESWGWRIPFLLGLGLGPVGIYIRSRLNDPGFPADERLG-ECAPVVEVVRSFSREA 245 Query: 50547 XXXXXXXXXXXXSTYILTFYMPTYAIHTLGLPMKLSMFVGVASGCVMLVTCPLFGWLSDQ 50726 +Y+L FY+PTYA L LP + ++L PL G LSD Sbjct: 246 LVGFGLVVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDL 305 Query: 50727 LGSRRLPIFVGRGVLVALL--FPAFWLMNHHPTLSVILPLTALMLLFYSLGSASEMALMC 50900 G R F+ +LVA++ +P F ++N P L +L + L + +A + Sbjct: 306 FGRR---WFLAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALS 362 Query: 50901 ESLPRHVRATGISIAYALAVTIFGGTAQLIATWLVKTTGSKLAPAGYVAACVVLSLIAVA 51080 + P V +TGISI+Y LAV FGG + I TW + TT + LAPA YV A ++SLI+V+ Sbjct: 363 DMFPDGVLSTGISISYNLAVITFGGFSAAIITWAIATTHNNLAPAFYVIAAAIVSLISVS 422 Query: 51081 M 51083 + Sbjct: 423 L 423 Score = 156 bits (395), Expect = 9e-37 Identities = 119/420 (28%), Positives = 194/420 (46%), Gaps = 10/420 (2%) Frame = -1 Query: 155993 KRAALASFVGTTIEWYDFYSYATAAAIVFGPLFFPGENRFISLLXXXXXXXXXXXARPLG 155814 +RA +A VG EW+DF SY+ + I+ LFFP + +SLL RP+G Sbjct: 20 RRAVIAVIVGNGFEWFDFISYSFFSVII-AKLFFPSTDDNLSLLLSVSTIGVGFFMRPIG 78 Query: 155813 GVMFGYLGDRFGRKRSLLATLMLMAVSTVAIGLLPTHAQAGVIAPILLVLMRVLQGIAVG 155634 G++ G + D+ GR+ +L T+ LM T IG PT+ AG+ AP+++V+ R+LQG + G Sbjct: 79 GIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAG 138 Query: 155633 GEWGGAVLLAGEHAPEGKRTFFASFAQLGSASGLIL-SMLAFGAVSTLSKDDMMSWGWRV 155457 GE GGA E P + ++ S+ Q +IL S+LA V L + + SWGWR+ Sbjct: 139 GEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWRI 198 Query: 155456 PFLASSVLLIVGFVIRASVSESPEFEEVRKSGNIAQKPLREALKVWPL-LLLAIGANVYG 155280 PFL L VG IR+ +++ P F + G A P+ E ++ + L+ G V+ Sbjct: 199 PFLLGLGLGPVGIYIRSRLND-PGFPADERLGECA--PVVEVVRSFSREALVGFGLVVFW 255 Query: 155279 IAGVYFSNIFMISYATQFLSLDRSMVLHCMTIXXXXXXXXXXXXXXXXQRFGTTRVLLIT 155100 Y ++ +YA++ L L S + + FG L Sbjct: 256 TVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLFGRRWFLAGA 315 Query: 155099 GAWAMIVPFVMLPLVH----LGTPVSITVGVGLATLAESGYYSVVAGFVSGIFVARIRYT 154932 A++ + + +++ L T + V GL + Y + +S +F + T Sbjct: 316 LLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVI---ASYEGPILAALSDMFPDGVLST 372 Query: 154931 AISIAYQVCGALAGGLTPLVAT----IIAQNTAPQWWPLAIQYASAAVLSSLCVWLISRR 154764 ISI+Y + GG + + T N AP ++ +A A+ L S+ +W R+ Sbjct: 373 GISISYNLAVITFGGFSAAIITWAIATTHNNLAPAFYVIA---AAIVSLISVSLWQPRRK 429 Score = 131 bits (329), Expect = 4e-29 Identities = 100/394 (25%), Positives = 166/394 (42%), Gaps = 5/394 (1%) Frame = -3 Query: 121395 EFYDFIIFVFFAPAIGQLFFPHDIPDWLRQLQTFGIFAAGYLARPLGGVIMAHFGDLFGR 121216 E++DFI + FF+ I +LFFP D L L + G+ RP+GG+++ D GR Sbjct: 33 EWFDFISYSFFSVIIAKLFFP-STDDNLSLLLSVSTIGVGFFMRPIGGIVIGGIADKVGR 91 Query: 121215 KRMFTLSVLMMSVPTLLMGLLPTYDTIGIXXXXXXXXXXXLQGAAVGGEVPGAWVFVSEH 121036 + T+++ +M+ T ++G PTY G+ LQG + GGE+ GA ++ E Sbjct: 92 RAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGGEMGGATAYLRER 151 Query: 121035 VPSRHIXXXXXXXXXXXXXXXXXXXLVAAGINSRYSAAEVGAFAWRIPFXXXXXXXLFSV 120856 VP+ ++A I ++ ++ WRIPF + Sbjct: 152 VPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWRIPFLLGLGLGPVGI 211 Query: 120855 YLRRWLHETPVFAEMXXXXXXXAEIPLKAVLRDHGRAVIVSMLLTWMLSAAIVVVILMTP 120676 Y+R L++ A+ P+ V+R R +V L + V++ P Sbjct: 212 YIRSRLNDPGFPADERLGEC----APVVEVVRSFSREALVGFGLVVFWTVCSYVLLFYIP 267 Query: 120675 ALLQKQFHLTPATTLFANSIATLCLTAGCITAGSLAGWIGAKRVLAIGGIGLAACYYLLF 120496 K L +T A + + G L+ G + LA + Y LF Sbjct: 268 TYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLFGRRWFLAGALLVAIVAAYPLF 327 Query: 120495 --VQVAADASTLPLYYGIAGFMVGTI-GAVPFVMVKSFPAVVRFSGISFSYNVAYAIFGG 120325 + A TL ++ + G ++ + G + + FP V +GIS SYN+A FGG Sbjct: 328 AMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFPDGVLSTGISISYNLAVITFGG 387 Query: 120324 LTPVIV--SLMMKSNPLAPVVYVAAICVLGAIAV 120229 + I+ ++ N LAP YV A ++ I+V Sbjct: 388 FSAAIITWAIATTHNNLAPAFYVIAAAIVSLISV 421 >ref|YP_164695.1|transposase Length = 387 Score = 107 bits (267), Expect = 7e-22 Identities = 75/234 (32%), Positives = 110/234 (47%), Gaps = 38/234 (16%) Frame = -1 Query: 199469 GNWFLNIVIEMPDVQARPIRSG---VGIDLGLKDFATLSTGEKLPN-------------- 199341 G ++L++ +E D +P+ VG+DLG+ D A S G+K + Sbjct: 157 GRYYLSLTVE--DNSIKPLEKTGAVVGVDLGVADLAITSDGKKYESFKPTYLDKQVRSWQ 214 Query: 199340 DRFGRRA--------------------AENLAKAQRARKHKRHIAKLHAKIANARADFQH 199221 +F +R E+ QRA++ K A AKIAN R D+ H Sbjct: 215 SKFSKRKYIATTEVRQWNHNHNDYKMLVEDYHNWQRAKRIK---ACYQAKIANKRKDYLH 271 Query: 199220 KLALDLVRRFDYIAVGNVSAAKLARTR-MAKSVYDASWSSFRNKLRYKAMAHGATFEEVD 199044 K+ +LV ++D IA+ ++ L + +AKS+ + SW FR L YK +G V Sbjct: 272 KITTELVEKYDVIAMEDLRTKNLLKNHHLAKSISNQSWREFRTILEYKCKWYGKQLIVVK 331 Query: 199043 ESGSTQSCSACGSKDSTTRPKGIAGLRIREWACSRCGVEHDRDTNAALNILRCG 198882 + ++Q CS+CG G L IREW C +CG HDRD NAA+NIL G Sbjct: 332 PNYTSQICSSCGYHS------GKKPLEIREWTCYKCGTHHDRDVNAAVNILNKG 379 Score = 88.6 bits (218), Expect = 3e-16 Identities = 68/234 (29%), Positives = 100/234 (42%), Gaps = 38/234 (16%) Frame = -3 Query: 268047 GNWFLNIVIEMPDVQARPIRSG---VGIDLGLKDFATLSTGEKLPN-------------- 267919 G ++L++ +E D +P+ VG+DLG+ D A S G+K + Sbjct: 157 GRYYLSLTVE--DNSIKPLEKTGAVVGVDLGVADLAITSDGKKYESFKPTYLDKQVRSWQ 214 Query: 267918 DQFGRRA--------------------AEKLAKAQRARKHKRHIAKLHAKVANARADFQH 267799 +F +R E QRA++ K A AK+AN R D+ H Sbjct: 215 SKFSKRKYIATTEVRQWNHNHNDYKMLVEDYHNWQRAKRIK---ACYQAKIANKRKDYLH 271 Query: 267798 KLALDLVRRFDYIAVGNVSAVKLARTR-MAKSVYDASWSSFRNKLRYKAVAHGATFEEVD 267622 K+ +LV ++D IA+ ++ L + +AKS+ + SW FR L YK +G V Sbjct: 272 KITTELVEKYDVIAMEDLRTKNLLKNHHLAKSISNQSWREFRTILEYKCKWYGKQLIVVK 331 Query: 267621 EXXXXXXXXXXXXXXXXTRPKGIAGLRVREWACSDCGAEHDRDINAALNILRCG 267460 G L +REW C CG HDRD+NAA+NIL G Sbjct: 332 PNYTSQICSSCGYH------SGKKPLEIREWTCYKCGTHHDRDVNAAVNILNKG 379 >ref|NP_945089.1|gp58 Length = 297 Score = 99.8 bits (247), Expect = 1e-19 Identities = 87/297 (29%), Positives = 125/297 (42%), Gaps = 9/297 (3%) Frame = +2 Query: 227321 LPPLNALRAFDAVARHGSFAGAAAELHVTHWAVGKQIRLLEDWFGLPLFDRRPRGVALTD 227500 LPPL L FDA ARHG+F AA EL+V AV KQ+ LE + G LF R + + LT Sbjct: 6 LPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTR 65 Query: 227501 EGAALLNDVSHAFERLGTAVVRLRHNTFTHRISGVVRVNVPMSFAFCWLLPRLADFHSRY 227680 G + V A + H ++ + A +L R+A+F + + Sbjct: 66 AGQQYADRVHAILADCVEATALVMKEQTPHSLT----IACASGTATLFLADRIAEFSAEH 121 Query: 227681 PDIDVRVSTTSRKLRYVADAFDIGV---RSGPEQGAGVVSRPLMPDLRVPACNPALL--R 227845 P++ VR+ A FDIGV R P G+ ++ + C P L R Sbjct: 122 PEVSVRILVREGVFNLNAAEFDIGVYYIRDVPP--PGIAGTAIVAEDVHAYCAPTFLAGR 179 Query: 227846 QHPIQSVADLRHHTLLHSATTRSAWSHWLK----EAGASDLRAARHVEFDHVNLQLGAAI 228013 + P Q DL TLL + + W W G R AR + + + L A+ Sbjct: 180 RVPPQ---DLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLAL 236 Query: 228014 EGLGVALASLPLIGRDLAEGRLVCPIASPVWRADDYMLVTNADRADDAAVSAFEEWM 228184 G G L +I + G+LV + Y ++ ADR D AV+ F EW+ Sbjct: 237 HGHGAILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWL 293 Score = 68.2 bits (165), Expect = 4e-10 Identities = 67/293 (22%), Positives = 116/293 (39%), Gaps = 6/293 (2%) Frame = -1 Query: 73280 LQAMQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGA 73101 LQ + F +FT+AAE L + + +V+ + LE FLG L R + L LT G Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 73100 AYYERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDL 72921 Y +R ILAD E A + PH L I L + + EF +P++ + Sbjct: 69 QYADRVHAILADCVEATA-LVMKEQTPH-SLTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 72920 QLGLSDRPVDLLQEGVDC-VIRVGALQDSSLVARRVGLFECVTVASPDYLE-RHGEPQTI 72747 ++ + + +L D V + + + + + +P +L R PQ + Sbjct: 127 RILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVPPQDL 186 Query: 72746 DD----LGQHKAVNYFSSRTGRTIDWTFLIDGKEVEMKMEGIVSVNDADAYVTCGIEGFG 72579 + + + + + R DW L G E+ + +S N + + G G Sbjct: 187 MEATLLVAEEQQRQWMGWR-----DWFRLTVG-EIGFRPARTISANSYPVLLQLALHGHG 240 Query: 72578 LIQPPLFMVLPHLREGRLKEVLPGVKPLPMPVSVVYPHSRHLSPKVRVFVDWI 72420 I M+ P + G+L V++P R +P V +F +W+ Sbjct: 241 AILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWL 293 Score = 60.1 bits (144), Expect = 1e-07 Identities = 72/298 (24%), Positives = 115/298 (38%), Gaps = 5/298 (1%) Frame = -3 Query: 260268 LPDFEGLAMFAKVAEHGSFAAAARSTGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTE 260089 LP + L F A HG+F AA V+ VS+ V +LE LG LF R ++ L LT Sbjct: 6 LPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTR 65 Query: 260088 FGRTISEKAGEIYRQXXXXXXXXXXXSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPE 259909 G+ +++ I P L +A ++A + F +PE Sbjct: 66 AGQQYADRVHAILADCVEATALVMKEQT-PHSLT-IACASGTATLFLADRIAEFSAEHPE 123 Query: 259908 VSIDLHLSDASVDLIADGFDAAL-RIAALPDSSLVARRLCAVTQFVVAAPEYLRREGRPT 259732 VS+ + + + +L A FD + I +P + + A AP +L GR Sbjct: 124 VSVRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFL--AGRRV 181 Query: 259731 HPLELADRPCLPYAYRARSAV-WR--FTNDAGDEESVMPTGPLRVTNADALLPTLLDGLA 259561 P +L + L + R + WR F G E P + + LL L G Sbjct: 182 PPQDLMEATLLVAEEQQRQWMGWRDWFRLTVG-EIGFRPARTISANSYPVLLQLALHGHG 240 Query: 259560 IAELPEFIAGEYLADGRLEAILPDWSLTTGGLY-FVTPSARARPAKVTALSDYFAEHL 259390 + + + G+L + D + GG Y + P+ R VT ++ H+ Sbjct: 241 AILGWKHMITPLVESGKL-VLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLLTHV 297 Score = 56.6 bits (135), Expect = 1e-06 Identities = 78/294 (26%), Positives = 111/294 (37%), Gaps = 12/294 (4%) Frame = +3 Query: 157197 LRLIRVFLAVTDAGGVSAAQAVLNVGQSTISAQLSSLETRLGYRLCERGRSGFRLTPKGE 157376 L+ + F A G + A LNV Q +S Q+ LET LG L R LT G+ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 157377 RFHAMSRKLLAALDEFGMAARHMDRQLVGTLNIGLIGHTPVSQNARIAEAIAAFRTRDEA 157556 ++ +LA D A M Q +L I T +A+ IA F Sbjct: 69 QYADRVHAILA--DCVEATALVMKEQTPHSLTIACASGT---ATLFLADRIAEFSAEHPE 123 Query: 157557 VRFSISVRAPGDLEEKLLSNEIQIAVGYFWHR---VPTLHYTPLFIERQIAYC------G 157709 V I VR E N + +G ++ R P + T + E AYC G Sbjct: 124 VSVRILVR-----EGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAG 178 Query: 157710 RGHPLFD-GAGTLTPADVAGFEW-AWRS-YPLPEAQMSTTPDRVTATADNMEAVALLILS 157880 R P D TL A+ +W WR + L ++ P R T +A++ + L L Sbjct: 179 RRVPPQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPAR-TISANSYPVLLQLALH 237 Query: 157881 GHHLGYLPQHFAAPYVAQGLLAPLNPDRLHYEVTFHMVVARDGRGDPVVEAFLE 158042 GH +H P V G L + + + ++ D R P V F E Sbjct: 238 GHGAILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFRE 291 Score = 55.1 bits (131), Expect = 4e-06 Identities = 57/255 (22%), Positives = 99/255 (38%), Gaps = 6/255 (2%) Frame = -2 Query: 269416 FAAVVDAGTFSAAADVIGMTPPGVSRAIARLEKRLNIRLFNRTTRSVSLTEEGRRFYEQV 269237 F A G F+ AA+ + + VS+ + +LE L LF R +++ LT G+++ ++V Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRV 74 Query: 269236 MPHXXXXXXXXXXXXXXASAVRGKLRINLDPVVYRAILGPRLDAFMDAHPELEIELIARD 269057 H L I L R+ F HPE+ + ++ R+ Sbjct: 75 --HAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILVRE 132 Query: 269056 SLGDLVMDGFDLAVRF-GEPRASSLIARKLLDTGVVTVAAPSYIARRGRPAKPEDLEDRH 268880 + +L FD+ V + + + ++ V AP+++A GR P+DL + Sbjct: 133 GVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLA--GRRVPPQDLMEAT 190 Query: 268879 HRCLEFRNPETGKPFAWEFHRKRKRIVVDTRG-----RLTVNDPGALLNACLAGSGIAQM 268715 E + + W R R+ V G ++ N LL L G G Sbjct: 191 LLVAEEQQRQ------WMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAILG 244 Query: 268714 LLLGAEPLIADGRLI 268670 PL+ G+L+ Sbjct: 245 WKHMITPLVESGKLV 259 Score = 47.4 bits (111), Expect = 8e-04 Identities = 56/240 (23%), Positives = 94/240 (39%), Gaps = 9/240 (3%) Frame = -1 Query: 152123 LVVIREVERQGSLTAAANALHLTQSALSHTVRKIEQQLGTPIWDREGRGLRLTQGGQYLL 151944 LV R G+ T AA L++ Q A+S V K+E LGT ++ R+ + L LT+ GQ Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71 Query: 151943 KLANRLLPQFELAEERMKQYAKGERGTLRIGMECHPCYQWLLKVVSPYLSRWPDVDVDVK 151764 + +L + E + +L I +L ++ + + P+V V + Sbjct: 72 DRVHAILA--DCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRIL 129 Query: 151763 QRFQFGGIGALFGYDIDVLVTPDPLNKPGLRFDPVFDYEQVLVVADSH-----RFANVDH 151599 R + A +DI V D + PG+ +V D H F Sbjct: 130 VREGVFNLNAA-EFDIGVYYIRD-VPPPGIA-------GTAIVAEDVHAYCAPTFLAGRR 180 Query: 151598 VTPEQLTDEVLITYPVETDR----LDIYNQFLSPAGIVPRRHKSIETTDIMLQMVASGRG 151431 V P+ L + L+ + + D + + G P R S + ++LQ+ G G Sbjct: 181 VPPQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHG 240 Score = 47.4 bits (111), Expect = 8e-04 Identities = 61/278 (21%), Positives = 113/278 (40%), Gaps = 5/278 (1%) Frame = +2 Query: 36905 AVARERSFTRAAAQLGISQSMLSHTIRGMEXXXXXXXXXXXXXXXXXXEAGERLLQVVEP 37084 A AR +FTRAA +L ++Q +S + +E AG++ V Sbjct: 17 AAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHA 76 Query: 37085 RFND-IEAELKSIIEMRDVPAGTIRITAPEHAIDTLLWPRLAKILALYPQIKVEVNADYA 37261 D +EA + + M++ ++ I L R+A+ A +P++ V + Sbjct: 77 ILADCVEA---TALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILVREG 133 Query: 37262 LTDIVQSRYDFGV-RLGDELSKDISAVRIGPDQRFAIVAAPSYFASKPVPTKPQDLVCHD 37438 + ++ + +D GV + D I+ I + A AP++ A + VP PQDL+ Sbjct: 134 VFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHA-YCAPTFLAGRRVP--PQDLMEAT 190 Query: 37439 CI---NLRLPTLGNLCAWELGKGQRKVNVRADGRLVFNGIYQVLNAALSGYGLAYLHEDL 37609 + + +G + L G+ + R + N +L AL G+G + + Sbjct: 191 LLVAEEQQRQWMGWRDWFRLTVGE--IGFRPARTISANSYPVLLQLALHGHGAILGWKHM 248 Query: 37610 AQPHLETGRLVPVLKPWWRTSPGYHIYYSAQREISRAM 37723 P +E+G+LV Y + + A R + A+ Sbjct: 249 ITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAV 286 Score = 47.0 bits (110), Expect = 0.001 Identities = 37/121 (30%), Positives = 57/121 (47%) Frame = -3 Query: 292455 LRRLRYFVTVAEELHFGRAALRLRIAQPPLTRHIAALEADLDIRLFERSTRAVQLTPAGA 292276 L+ L +F A +F RAA L +AQ +++ + LE L LF R +A+ LT AG Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 292275 LFLEHARSVIHAVDEAEATARKMAQGMVGRVVIGYASSIPMSDAFSDIIRNASRSMPEVE 292096 + + +++ D EATA M + + I AS + +D I S PEV Sbjct: 69 QYADRVHAIL--ADCVEATALVMKEQTPHSLTIACASG-TATLFLADRIAEFSAEHPEVS 125 Query: 292095 L 292093 + Sbjct: 126 V 126 Score = 44.3 bits (103), Expect = 0.007 Identities = 35/132 (26%), Positives = 60/132 (45%) Frame = +1 Query: 35935 AVARAKSFTRAAVQLGVSQSAVSHXXXXXXXXXXXXXXXXNSRTVTPTEVGERLLHIVAP 36114 A AR +FTRAA +L V+Q AVS +++ + T G++ V Sbjct: 17 AAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHA 76 Query: 36115 RLKEIDAEMSALSDLGGSPRGSIRVTAPDYPSRTILAPKLKEFLPKYPDIKVELSIDNRF 36294 L + E +AL +P S+ + + LA ++ EF ++P++ V + + Sbjct: 77 ILADC-VEATALVMKEQTPH-SLTIACASGTATLFLADRIAEFSAEHPEVSVRILVREGV 134 Query: 36295 VDLVAEQFDAGV 36330 +L A +FD GV Sbjct: 135 FNLNAAEFDIGV 146 Score = 42.7 bits (99), Expect = 0.020 Identities = 33/122 (27%), Positives = 50/122 (40%) Frame = -1 Query: 52043 LSQLRIFQAVVEHGSXXXXXXXXXXAQSGVTQQLQGLEATLGATLFTRTNRGIVPTAVGQ 51864 L L F A HG+ AQ V++Q+ LE LG TLF R + + T GQ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 51863 RLLARSGSILGECEQVEREIRQLSGAYEGTVTLGLVTEPLIDAFAPVLTAFRARFDKVDV 51684 + R +IL +C + + + + T+ T L A + F A +V V Sbjct: 69 QYADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLF--LADRIAEFSAEHPEVSV 126 Query: 51683 HL 51678 + Sbjct: 127 RI 128 >ref|NP_039614.1|gene IV product Length = 428 Score = 95.1 bits (235), Expect = 3e-18 Identities = 68/244 (27%), Positives = 123/244 (50%), Gaps = 7/244 (2%) Frame = +2 Query: 313415 QQVMLEVKVAE-VSKTLINQMGSAFNIQGGFGSWSGALVSNLLAGVASGAVFNKANNKPF 313591 Q +M E V+ V + + S + GGF + AL + L S +FN Sbjct: 202 QSLMFETSVSNGVDLSFALALASGGKVAGGFNT--SALGTALSTAGGSFGIFN---GNIL 256 Query: 313592 SIAADAQNTDNLVKILAEPNLVTISGQEATFLAGGKI-FIPIPQSGSNGVSSI-----TL 313753 +++ A +D+ K+++ P ++T SGQ G + F+ +G +S+ T+ Sbjct: 257 ALSLQAVQSDSNSKVISTPRILTQSGQSGYISVGQNVPFVTGKVTGE--AASVNNPFQTI 314 Query: 313754 QEEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVTLSASNIGGTSILPLITTRRAST 313933 + + GV+LK TP V+ NG++ L + + LS + AS+I + R+ T Sbjct: 315 ERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLSNQAI---ASDI-------ITNQRQIQT 364 Query: 313934 TVQMSDGESFAIGGLIKDNASGALKAIPGVGEVPVLGALFRSTSFQQDRTELIFLITPHL 314113 TVQ+ DG++ +GGLI N + +++P + ++P++G LFRS S +D + L+T H+ Sbjct: 365 TVQIKDGQTLLLGGLISSNQFDSDRSVPFMSKIPLIGWLFRSHSDSKDDRTMFVLLTAHV 424 Query: 314114 VKPL 314125 ++ L Sbjct: 425 IRAL 428 >ref|NP_040579.1|G IV protein Length = 437 Score = 90.5 bits (223), Expect = 8e-17 Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 9/245 (3%) Frame = +2 Query: 313418 QVMLEVKVAEVSKTLINQMGSAFNIQGGFGSWSGALVSNLLAGVA---SGAVFNKANNKP 313588 QV+++ + E S L+N + +F G + G A +G F N Sbjct: 207 QVLIQSLMFETS--LVNGVDLSFAAGSASGDKVAGGFNTSALGTALSTAGGSFGIFNGNV 264 Query: 313589 FSIAADAQNTDNLVKILAEPNLVTISGQEATFLAGGKIFIPIPQSGSNGVSSI------T 313750 +++ A D+ K+++ P ++T SGQ G + P G ++ T Sbjct: 265 LALSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQNV--PFVTGKVTGEAANVNNPFQT 322 Query: 313751 LQEEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVTLSASNIGGTSILPLITTRRAS 313930 ++ + GV+LK TP V+ NG++ L + + L+ ++AS+I + R Sbjct: 323 IERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLTSQ---MTASDI-------ITNQRHMQ 372 Query: 313931 TTVQMSDGESFAIGGLIKDNASGALKAIPGVGEVPVLGALFRSTSFQQDRTELIFLITPH 314110 TTVQ+ DG++ +GGLI N + +++P VPV+G LFRS S + + L+T H Sbjct: 373 TTVQIKDGQTLLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNERTMFVLLTAH 432 Query: 314111 LVKPL 314125 ++K L Sbjct: 433 VIKAL 437 >ref|NP_047360.1|ORF348; homologous to eryA gene product in L07626 Length = 348 Score = 84.3 bits (207), Expect = 6e-15 Identities = 61/240 (25%), Positives = 102/240 (42%), Gaps = 28/240 (11%) Frame = -1 Query: 199511 GKIKDGSNFAQDARGNWFLNIVIEMPDVQARPIRSG-VGIDLGLKDFATLSTGEKLPNDR 199335 GKIK+ + G W+++ +E+ + + VG+D G+ ATLS G Sbjct: 90 GKIKNAT--ISQLAGQWYISFQVEIETAEPNHTSTTIVGLDAGVAKLATLSDGTVFEPVN 147 Query: 199334 FGRRAAENLAKAQRA-----------RKHKRHIAKLHAKIANARADFQHKLALDLVRRFD 199188 ++ + LA+ QR +K KR I LH++IAN R D+ HK+ + + Sbjct: 148 SFQKNQKKLARLQRQLSRKVKFSNNWQKQKRKIQCLHSRIANIRRDYLHKVTTTVSKNHA 207 Query: 199187 YIAVGNVSAAKL----------------ARTRMAKSVYDASWSSFRNKLRYKAMAHGATF 199056 I + ++ + + A++ + +S+ D W R +L YK + G Sbjct: 208 MIVIEDLKVSNMSKSAAGTVSQPGRNVRAKSGLNRSILDQGWYEMRRQLEYKQLWRGGQV 267 Query: 199055 EEVDESGSTQSCSACGSKDSTTRPKGIAGLRIREWACSRCGVEHDRDTNAALNILRCGRA 198876 V + ++Q C+ CG R L ++ C CG + D N A NIL G A Sbjct: 268 LAVPPAYTSQRCACCGHTAKENR------LSQSQFRCQVCGYTANADVNGARNILAAGHA 321 Score = 71.2 bits (173), Expect = 5e-11 Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 28/240 (11%) Frame = -3 Query: 268089 GKIKDGTNFAQDARGNWFLNIVIEMPDVQARPIRSG-VGIDLGLKDFATLSTGEKLPNDQ 267913 GKIK+ T G W+++ +E+ + + VG+D G+ ATLS G Sbjct: 90 GKIKNAT--ISQLAGQWYISFQVEIETAEPNHTSTTIVGLDAGVAKLATLSDGTVFEPVN 147 Query: 267912 FGRRAAEKLAKAQRA-----------RKHKRHIAKLHAKVANARADFQHKLALDLVRRFD 267766 ++ +KLA+ QR +K KR I LH+++AN R D+ HK+ + + Sbjct: 148 SFQKNQKKLARLQRQLSRKVKFSNNWQKQKRKIQCLHSRIANIRRDYLHKVTTTVSKNHA 207 Query: 267765 YIAVGNVSAVKL----------------ARTRMAKSVYDASWSSFRNKLRYKAVAHGATF 267634 I + ++ + A++ + +S+ D W R +L YK + G Sbjct: 208 MIVIEDLKVSNMSKSAAGTVSQPGRNVRAKSGLNRSILDQGWYEMRRQLEYKQLWRGGQV 267 Query: 267633 EEVDEXXXXXXXXXXXXXXXXTRPKGIAGLRVREWACSDCGAEHDRDINAALNILRCGRA 267454 V R L ++ C CG + D+N A NIL G A Sbjct: 268 LAVPPAYTSQRCACCGHTAKENR------LSQSQFRCQVCGYTANADVNGARNILAAGHA 321 >ref|NP_076827.1|Csp Length = 66 Score = 84.0 bits (206), Expect = 8e-15 Identities = 40/64 (62%), Positives = 49/64 (76%) Frame = +2 Query: 288989 MDTGIVKWFNDSKGFGFITPDKGGDDLFAHFSEIRADGFKTLAENQKVSFETKQGPKGLQ 289168 M G VKWFN KGFGFIT ++G DLFAHFS I++DGFK+L E QKV F+ ++G +GLQ Sbjct: 1 MANGTVKWFNADKGFGFITSEEG-KDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQ 59 Query: 289169 AANI 289180 A NI Sbjct: 60 AVNI 63 >ref|NP_047359.1|maturation protein Length = 429 Score = 83.6 bits (205), Expect = 1e-14 Identities = 67/247 (27%), Positives = 117/247 (47%), Gaps = 11/247 (4%) Frame = +2 Query: 313418 QVMLEVKVAEVSKTLINQMGSAFNIQGGFGSWS---GALVSNLLAGVAS--GAVFNKANN 313582 QV++E + E + + G F+ G S S G + ++ L V S G F N Sbjct: 199 QVLVESVIFETTAS----DGFDFSFAAGDPSGSPVAGGINTDRLTSVLSSTGGSFGIFNG 254 Query: 313583 KPFSIAADAQNTDNLVKILAEPNLVTISGQEATFLAGGKIFIPIPQSGSNGVSSI----- 313747 ++ A T + +L+ P ++T+SGQ TF AG + P G ++ Sbjct: 255 NILGLSLKALETSSKSTLLSMPRILTMSGQPGTFTAGQNV--PFVTGRVTGEAANVNNPF 312 Query: 313748 -TLQEEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVTLSASNIGGTSILPLITTRR 313924 T++ + G++LK P V G + + V+ +S + +AS+I + TR Sbjct: 313 QTIERHDVGISLKVVPVVTPGGLLIMDVSTNADSISDSQ---TASDI-------ITNTRS 362 Query: 313925 ASTTVQMSDGESFAIGGLIKDNASGALKAIPGVGEVPVLGALFRSTSFQQDRTELIFLIT 314104 STTVQ+ G++ +GG++ + S + ++P V ++P++GALF S S ++ L LI Sbjct: 363 ISTTVQLKSGQTVLLGGMVDNRESDSDSSVPWVSKIPLIGALFTSKSSNANKRTLYILIR 422 Query: 314105 PHLVKPL 314125 +V L Sbjct: 423 ARVVNLL 429 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 83.2 bits (204), Expect = 1e-14 Identities = 62/217 (28%), Positives = 96/217 (44%), Gaps = 6/217 (2%) Frame = +3 Query: 47097 PIVFHHGWPLSADDWDTQMLFFLANGYRVIAHDRRGHGRSSQVAEGHDMDHYAADAFALV 47276 P+VF HG +SA ++ + +G+RVIA D HGRS + GH ++ + Sbjct: 24 PLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTGHTVEDMTRVTLKTL 83 Query: 47277 ETLDLRHAVHIGHSTGGGEVARYVARHGEPTGRVAKAILVSAVTPLMLKTPSNPEGLPLD 47456 + LD+ A+ GHS GGG V ARH RVA A+L+ A + + + + Sbjct: 84 DELDIHRAIFAGHSMGGGMVVEIAARHPH---RVAAAVLLDAAA-----GQEHHDNIKVG 135 Query: 47457 VFDGLRKGLAENRAQFFVDVPAGPFYGFNRPDATVHQGVIQNWWRQGMMGSAQAHYEGIK 47636 + L A+ + D+ + + D + GM+ + + ++ Sbjct: 136 HYATLAFRAAKKLGEAVTDIVGDGYEAMHLRDTGEKLSFL------GMLRDSVSGLRFVR 189 Query: 47637 ---AFSETDQTEDLQLI---GVPTLVLHGEDDQIVPY 47729 A + D T L + GVPT VLHG DQIVPY Sbjct: 190 AAFALMKADTTPLLHAMYRHGVPTAVLHGLHDQIVPY 226 Score = 51.6 bits (122), Expect = 4e-05 Identities = 52/219 (23%), Positives = 85/219 (38%), Gaps = 16/219 (7%) Frame = -3 Query: 83685 LSSGISLPYVERGSGAPMVFVHGSLCDYRYWDPQLAALSAH-YRCIAPSLSHYWPAVEAG 83509 L+ G + G+GAP+VF+HG + ++ L L+ H +R IA +++ + Sbjct: 8 LADGFRVGVSTVGTGAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRS--GS 65 Query: 83508 IQDEFSWQNHVDELAEFIDALDLGPVHLVGHSRGGSVAFNVARQHPHLVESLTLAD-PGG 83332 + + ++ + +D LD+ GHS GG + +A +HPH V + L D G Sbjct: 66 LPTGHTVEDMTRVTLKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDAAAG 125 Query: 83331 PLQQPGVREXXXXXXXXXLRTK--------------AVNLIDQGDVEAGLEMFVDSVSLP 83194 ++ K A++L D G+ + L M DSVS Sbjct: 126 QEHHDNIKVGHYATLAFRAAKKLGEAVTDIVGDGYEAMHLRDTGEKLSFLGMLRDSVS-- 183 Query: 83193 GAWKKSTARFRTMAIDNASTLPKQLRDPLPAYSQHTAGD 83077 + A F M D L R +P H D Sbjct: 184 -GLRFVRAAFALMKADTTPLLHAMYRHGVPTAVLHGLHD 221 Score = 39.7 bits (91), Expect = 0.17 Identities = 31/110 (28%), Positives = 50/110 (45%) Frame = +1 Query: 287638 GRPLALLLHGFPDLAYGWRHLMPILADAGYHVVAPDQRGYGRTTGWANDYDAPLGPFSLL 287817 G PL + LHG A + ++ LA+ G+ V+A D +GR+ P G ++ Sbjct: 22 GAPL-VFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSG------SLPTG-HTVE 73 Query: 287818 NMTRDALGLVSALGYRHTSMLVGHDLGSPVAAYCALARPDVFPSVVLMSA 287967 +MTR L + L H ++ GH +G + A P + VL+ A Sbjct: 74 DMTRVTLKTLDELDI-HRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDA 122 >ref|NP_510894.1|phage assembly protein Length = 426 Score = 77.0 bits (188), Expect = 9e-13 Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 11/247 (4%) Frame = +2 Query: 313418 QVMLEVKVAEVSKTLINQMGSAFNIQGGFGSWSGALVSNL----LAGVAS--GAVFNKAN 313579 Q+++E + EV Q G A + GS G + + L V S G F N Sbjct: 197 QILIEGLIFEV------QQGDALDFSFAAGSQRGTVAGGVNTDRLTSVLSSAGGSFGIFN 250 Query: 313580 NKPFSIAADAQNTDNLVKILAEPNLVTISGQEATFLAGGKI-FIPIPQSGSNGVSSI--- 313747 ++ A T++ KIL+ P ++T+SGQ+ + G + FI +G + + Sbjct: 251 GDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQ 310 Query: 313748 TLQEEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVTLSASNIGGTSILPLITTRRA 313927 T++ + G+++ P +A G I L + + LS + T +IT +R+ Sbjct: 311 TIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSS-----------TQASDVITNQRS 359 Query: 313928 -STTVQMSDGESFAIGGLIKDNASGALKAIPGVGEVPVLGALFRSTSFQQDRTELIFLIT 314104 +TTV + DG++ +GGL + +P + ++P++G LF S S + + L L+ Sbjct: 360 IATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVK 419 Query: 314105 PHLVKPL 314125 +V+ L Sbjct: 420 ATIVRAL 426 >ref|NP_046572.1|ABC transporter Length = 705 Score = 73.6 bits (179), Expect = 1e-11 Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 5/184 (2%) Frame = +2 Query: 94085 LRDVTLDVRRGEVFGIIGRSGAGKSTLLRLLNGLERPSSGRVRVQGVDVGALDEDGLVAL 94264 + D+ L + R + IIG SG GKST + L+ L + + + G+D+ D +++ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDH---LSI 555 Query: 94265 RRRTGMVFQHFNLLSAKTVFENVALPLKIAGVPKAERVRKXXXXXXXXXXXXKRDAYPAS 94444 R+R + ++ L T+ EN+ + +I + E K+ +Y S Sbjct: 556 RKRIVYIDENPFLFKG-TIKENLCMG-EIFDQNEIENACIMSQCHEFICNLDKQYSYKLS 613 Query: 94445 -----LSGGQKQRVGIARALVHDPEVLLCDEATSALDPETTQSILALLADINRRLGLTIV 94609 LS GQKQR+ +ARA++H P+VL+ DE+ S +DP+ T+ I L R+ I+ Sbjct: 614 ENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETL----HRMDCLII 669 Query: 94610 LITH 94621 LITH Sbjct: 670 LITH 673 Score = 55.8 bits (133), Expect = 2e-06 Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 9/260 (3%) Frame = +1 Query: 256975 VPDYLIQSDAVRERFARLKARDVILDVRHVGKRFATPQGECVALDDISFRTHRREFVCVI 257154 V +Y +Q D+ E L D I +++ V + ++DI+ R++ V +I Sbjct: 461 VVNYPVQQDS-NENLTEL---DFIQNIKTVNLNIGADPMRYI-VEDINLILDRKDKVLII 515 Query: 257155 GPSGCGKSTLIRILAGLDAQTSGDVLLDGKPV---DGPGADRGMVFQGYTLFPWL-TVKK 257322 G SG GKST + L+ L + L+G + D + +V+ F + T+K+ Sbjct: 516 GESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKE 575 Query: 257323 NVMFG--LRMNGSSSGVAEREALQW---LDLVGLTRFADVYPHQLSGGMKQRVAIARALA 257487 N+ G N + + ++ LD + ++ LS G KQR+A+ARA+ Sbjct: 576 NLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSE-NGSNLSTGQKQRLALARAIL 634 Query: 257488 NRPRILLMDEPFGALDAQTRARMQTHLLDIWRNIDVTILFITHDLDEAIFLADRILVLKA 257667 ++P++L++DE +D + L +D I+ ITH+ D + F ++ LV + Sbjct: 635 HQPQVLILDESLSNIDPDNTKLIYETL----HRMDCLIILITHN-DPSNFKYNKKLVFRN 689 Query: 257668 NPGGVQELIEVPVPRPRDYS 257727 N +IE ++YS Sbjct: 690 N-----RIIESSYSENKEYS 704 Score = 51.2 bits (121), Expect = 6e-05 Identities = 58/228 (25%), Positives = 111/228 (48%), Gaps = 16/228 (7%) Frame = +2 Query: 132530 IEHLSVRYGA---RTVLEDLSLSIGAGEFLTVLGKSGCGKTTLLRFIAGFVKADGLTGTL 132700 I+ +++ GA R ++ED++L + + + ++G+SG GK+T + ++ K + + Sbjct: 483 IKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKS--I 540 Query: 132701 TVAGRDLT---HAPPHKRNLGLLFQNYALFPHLSVFENVAFGL--------RARGMASSE 132847 + G D+ H KR + + +N LF ++ EN+ G A M+ Sbjct: 541 YLNGLDINRYDHLSIRKR-IVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCH 598 Query: 132848 VTRRVADALKLVQLGDAGHHLPAQLSGGMQQRVALARALVIEPDVLLLDEPLSALDANLR 133027 D +L + G + LS G +QR+ALARA++ +P VL+LDE LS +D + Sbjct: 599 EFICNLDKQYSYKLSENG----SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPD-- 652 Query: 133028 ASVRSELKALHERLPNL--TVVCVTHDRDDALVLSDRALLMRDGHIAQ 133165 K ++E L + ++ +TH+ D + ++ L+ R+ I + Sbjct: 653 -----NTKLIYETLHRMDCLIILITHN-DPSNFKYNKKLVFRNNRIIE 694 >ref|NP_040655.1|unknown protein Length = 430 Score = 71.2 bits (173), Expect = 5e-11 Identities = 53/238 (22%), Positives = 106/238 (44%), Gaps = 4/238 (1%) Frame = +2 Query: 313415 QQVMLEVKVAEVSKTLINQMGSAFNIQGGFGSWSGALVSNLLAGVASGAVFNKANNKPFS 313594 +QV +E V E S ++G + G+WS +L S F +N + Sbjct: 186 RQVAIEANVVEASVDWSKRLGLNWGGALSLGNWSAVTAGDLSVAAGSSIGFGFLSN---T 242 Query: 313595 IAAD----AQNTDNLVKILAEPNLVTISGQEATFLAGGKIFIPIPQSGSNGVSSITLQEE 313762 ++ D A + ++++ P L+T+ Q A+ L G ++ P QS +G +S+ + Sbjct: 243 LSLDGLFTAMENEGNGRVVSRPTLLTLDRQSASVLRGTEL--PYQQSAGDGATSVAFKHA 300 Query: 313763 EFGVALKFTPTVLANGRISLKVAPEVSELSQTGVTLSASNIGGTSILPLITTRRASTTVQ 313942 + +K P + + I ++V +S+ S + G +P I T R TT++ Sbjct: 301 ALSLEVK--PVISPDNSIVIEVL-----VSRDSPNFSNAIDG----VPPIDTNRLVTTIR 349 Query: 313943 MSDGESFAIGGLIKDNASGALKAIPGVGEVPVLGALFRSTSFQQDRTELIFLITPHLV 314116 + G++ +GG+ + G+ +P +G LF+ ++ EL+ +TP ++ Sbjct: 350 VPHGQTVVLGGVYSTINQQGSSRVSGISRIPGIGRLFKKKEHVTEQYELLIFLTPRIL 407 >ref|NP_817650.1|gp61 Length = 274 Score = 70.1 bits (170), Expect = 1e-10 Identities = 62/213 (29%), Positives = 95/213 (44%), Gaps = 2/213 (0%) Frame = +3 Query: 47097 PIVFHHGWPLSADDWDTQMLFFLANGYRVIAHDRRGHGRSSQVAEGHDMDHYAADAFALV 47276 P+VF HG +SA ++ ++ G+ V A D HGR+ + GH ++ + Sbjct: 26 PLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFGHTVEEMTRVTLRAL 85 Query: 47277 ETLDLRHAVHIGHSTGGGEVARYVARHGEPTGRVAKAILVSAVTPLMLKTPSNPEGLPLD 47456 + L + AV +GHS GGG VA R+ E RV AIL+ A + + Sbjct: 86 DALGIDQAVFVGHSMGGGMVAEIAPRYPE---RVLAAILLDAAA---------GKEHHAN 133 Query: 47457 VFDGLRKGLAENRAQFFVDVPAGPFYGFNRPDATVHQGVIQNWWRQGMMG--SAQAHYEG 47630 + D LR + + VDV + AT G+ Q R G +A Y Sbjct: 134 LKDPLR--ATQRLSGAVVDVLGDTYQAIKLRSATEGLGLAQT-LRSSFAGFRFVRAAYAL 190 Query: 47631 IKAFSETDQTEDLQLIGVPTLVLHGEDDQIVPY 47729 +KA +E + ++ + V T V+HG DQIVP+ Sbjct: 191 LKADTE-PLLKAMKALDVQTAVIHGLSDQIVPF 222 Score = 42.7 bits (99), Expect = 0.020 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 4/119 (3%) Frame = -3 Query: 83685 LSSGISLPYVERGSGAPMVFVHGSLCDYRYWDPQLAALSAHYRCIAPSLSHYWPAVEAGI 83506 L G + + G+G P+VF+HG ++ L L+ + AV G Sbjct: 10 LDDGFRVGVSQVGTGVPLVFLHGLTVSALAYEELLIELAQRGFAVTAL-----DAVNHGR 64 Query: 83505 QDEFSWQNHVDELAEF----IDALDLGPVHLVGHSRGGSVAFNVARQHPHLVESLTLAD 83341 D + + V+E+ +DAL + VGHS GG + +A ++P V + L D Sbjct: 65 TDSLPFGHTVEEMTRVTLRALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILLD 123 Score = 41.6 bits (96), Expect = 0.044 Identities = 38/125 (30%), Positives = 57/125 (45%) Frame = +1 Query: 287593 NGLDVHILEAGHESAGRPLALLLHGFPDLAYGWRHLMPILADAGYHVVAPDQRGYGRTTG 287772 +G V + + G G PL + LHG A + L+ LA G+ V A D +GRT Sbjct: 12 DGFRVGVSQVG---TGVPL-VFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTD- 66 Query: 287773 WANDYDAPLGPFSLLNMTRDALGLVSALGYRHTSMLVGHDLGSPVAAYCALARPDVFPSV 287952 P G ++ MTR L + ALG ++ VGH +G + A A P+ + Sbjct: 67 -----SLPFG-HTVEEMTRVTLRALDALGI-DQAVFVGHSMGGGMVAEIAPRYPERVLAA 119 Query: 287953 VLMSA 287967 +L+ A Sbjct: 120 ILLDA 124 >ref|NP_047372.1|putative maturation protein Length = 500 Score = 65.9 bits (159), Expect = 2e-09 Identities = 57/231 (24%), Positives = 109/231 (47%), Gaps = 2/231 (0%) Frame = +2 Query: 313415 QQVMLEVKVAEVSKTLINQMGSAFNIQGGFGSWSGALVSNLLAGVASGAVFNKANNKPFS 313594 +Q+ +E + E +++G N+Q F V+NL+ + F+ Sbjct: 223 RQIFIEAVITETELGDNSELG--VNLQAAFDK--AGFVTNLVNASKLKDNLFIFESGDFN 278 Query: 313595 IAADAQNTDNLVKILAEPNLVTISGQEATFLAGGKIFIPIPQSGSNGVSSIT-LQEEEFG 313771 A + + ++L+ PN++ + + G + + S ++G +S+ ++ ++ G Sbjct: 279 ALVKAISGSSDTRLLSRPNILIMDRERGYITVGQNVPFLVSNSTTDGGTSVQRIERKDVG 338 Query: 313772 VALKFTPTVLANGRISLKVAPEVSELSQTGVTLSASNIGGTSILPLITTRRA-STTVQMS 313948 V+L+ TP V+ + I L + E S S T T++A +IT +R TTV + Sbjct: 339 VSLEVTPHVMGDDVI-LVINQESS--SVTDSTIAAD---------IITNKRTLMTTVAVK 386 Query: 313949 DGESFAIGGLIKDNASGALKAIPGVGEVPVLGALFRSTSFQQDRTELIFLI 314101 G++ +GGLI D +P + + P++G LFRSTS + + EL +I Sbjct: 387 SGQTIVLGGLISDEKRNVESGVPVLKDTPLIGGLFRSTSTKNVQKELRVVI 437 >ref|NP_818239.1|gp188 Length = 318 Score = 64.7 bits (156), Expect = 5e-09 Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 1/154 (0%) Frame = -3 Query: 64770 GILLIADEVQTGFARTGKLFAMQHYDVLADLITMAKSLAGGMPLSGVVGRADVMDAAAPG 64591 G ++ADE TGF R G+++ Q Y D I GG+ L GV+G A+++D A G Sbjct: 136 GRTVVADESATGFGRLGRIWGHQAYGFTPDAIIFGGPAGGGLTLGGVIGPAELLDDAFVG 195 Query: 64590 GLGGTYAGNPLAVASAHAVLEIIDEEKLCERATQLGDVLKAKLNAL-QADVPQIADVRGP 64414 + AG PLA A+ A L I+ E L E + G +L AL +AD G Sbjct: 196 PM----AGAPLACATGAATLAAINPE-LLEHVREEGVTFGERLRALVDRFGDYLADTAGS 250 Query: 64413 GAMIAVEFLKPGSGEPDAEFTKRVQTRALERGLL 64312 G ++F P + ++ + + GLL Sbjct: 251 GLYHTLDFRSP-------QLARKFEVSTRQHGLL 277 >ref|NP_835645.1|putative transposase Length = 246 Score = 63.9 bits (154), Expect = 8e-09 Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 12/205 (5%) Frame = -1 Query: 199472 RGNWFLNIVIEMPDVQARPIRSGVGIDLGLKDFATLSTGEKLPNDRFGR-RAAENLAKAQ 199296 +G++++ I I + +G+DLG+ ATLS G D+ R RA + Sbjct: 7 QGDYYIGIHINVETPPPEDEHGWIGVDLGIASIATLSDGTVFSGDQIERVRARYERTRRS 66 Query: 199295 RARKHKRHIAKLHAKIANARADFQHKLALDLVRRFDYIAVGNVSAAKL-----------A 199149 RK R ++ +++ FQ + + RR A+ +L Sbjct: 67 LQRKGTRGAKRVLKRLSGRERRFQQAINHTISRRIVDRAIAEGKGVRLEDLSGIRKSVRV 126 Query: 199148 RTRMAKSVYDASWSSFRNKLRYKAMAHGATFEEVDESGSTQSCSACGSKDSTTRPKGIAG 198969 R + ++ ++ R K+ YK G FE +D ++Q C CG + R Sbjct: 127 RKSQRRRIHRWAFYDLRIKIAYKCALAGVPFELIDPRYTSQRCPVCGHTERANRKSQ--- 183 Query: 198968 LRIREWACSRCGVEHDRDTNAALNI 198894 ++ C CG+E + D A+NI Sbjct: 184 ---SKFVCRSCGLEANADVVGAINI 205 Score = 54.3 bits (129), Expect = 7e-06 Identities = 54/232 (23%), Positives = 88/232 (37%), Gaps = 12/232 (5%) Frame = -3 Query: 268050 RGNWFLNIVIEMPDVQARPIRSGVGIDLGLKDFATLSTGEKLPNDQFGR-RAAEKLAKAQ 267874 +G++++ I I + +G+DLG+ ATLS G DQ R RA + + Sbjct: 7 QGDYYIGIHINVETPPPEDEHGWIGVDLGIASIATLSDGTVFSGDQIERVRARYERTRRS 66 Query: 267873 RARKHKRHIAKLHAKVANARADFQHKLALDLVRRFDYIAVGNVSAVKL-----------A 267727 RK R ++ +++ FQ + + RR A+ V+L Sbjct: 67 LQRKGTRGAKRVLKRLSGRERRFQQAINHTISRRIVDRAIAEGKGVRLEDLSGIRKSVRV 126 Query: 267726 RTRMAKSVYDASWSSFRNKLRYKAVAHGATFEEVDEXXXXXXXXXXXXXXXXTRPKGIAG 267547 R + ++ ++ R K+ YK G FE +D R Sbjct: 127 RKSQRRRIHRWAFYDLRIKIAYKCALAGVPFELIDPRYTSQRCPVCGHTERANRKS---- 182 Query: 267546 LRVREWACSDCGAEHDRDINAALNILRCGRASPGVGIRRL*AVEDVKVELTG 267391 ++ C CG E + D+ A+NI A GV R A +DV+ L G Sbjct: 183 --QSKFVCRSCGLEANADVVGAINI-----ALGGVVNRPEVAPDDVEAVLHG 227 >ref|NP_046564.1|unknown Length = 177 Score = 56.2 bits (134), Expect = 2e-06 Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 14/132 (10%) Frame = +3 Query: 245445 RSGSGVR-WAVERL-----------SDGHLLGTCGLFRWNRNWRSCAVGYELATFA--RG 245582 RS + +R W E+L SD +++G F +R ++ GY LA F RG Sbjct: 42 RSANNMREWVEEQLEKDEFRFIAVESDNNIVGMIETFDCDR--KNGTFGYYLAVFEPYRG 99 Query: 245583 KGYMNEALSAAIDYGFDTMQINRIEAQVHPQNASSIQVLETLGFVREGYQRQAGYWRGAY 245762 KG+ E + + + F + ++ V+ N SI++ E LGF++EG R+ + +GAY Sbjct: 100 KGFAKEMILMVLRFFFLELAYQKVNTTVYSFNNPSIRLHEKLGFMKEGQLRKIIFTKGAY 159 Query: 245763 HDLLQFSLLRSD 245798 +D + F + R + Sbjct: 160 YDGICFGMTREE 171 >ref|NP_705643.1|gp17 Length = 695 Score = 51.2 bits (121), Expect = 6e-05 Identities = 32/92 (34%), Positives = 46/92 (50%) Frame = +1 Query: 243841 GSQTIGPAQSHCGGKVSLQIDNESYMSRLRKKVGSDLILSPSVAAVIHDHEGKLLLQEKS 244020 G T P + G + N + R+ D + + A + D GK+LL ++ Sbjct: 537 GGDTGAPGGARAGATAPPTVANVNANVNPREAGAQDAAMRAAGAVYVVD--GKVLLMKRP 594 Query: 244021 SGEAWSLPAGGVELGESPQEAIFREVMEETGY 244116 +G+ W LPAG VE E+P+EA RE EETGY Sbjct: 595 AGD-WGLPAGKVEGNETPEEAARRETREETGY 625 >ref|NP_958122.1|gp17 Length = 694 Score = 51.2 bits (121), Expect = 6e-05 Identities = 32/92 (34%), Positives = 46/92 (50%) Frame = +1 Query: 243841 GSQTIGPAQSHCGGKVSLQIDNESYMSRLRKKVGSDLILSPSVAAVIHDHEGKLLLQEKS 244020 G T P + G + N + R+ D + + A + D GK+LL ++ Sbjct: 536 GGDTGAPGGARAGATAPPTVANVNANVNPREAGAQDAAMRAAGAVYVVD--GKVLLMKRP 593 Query: 244021 SGEAWSLPAGGVELGESPQEAIFREVMEETGY 244116 +G+ W LPAG VE E+P+EA RE EETGY Sbjct: 594 AGD-WGLPAGKVEGNETPEEAARRETREETGY 624 >ref|NP_047971.2|gp26 Length = 174 Score = 47.8 bits (112), Expect = 6e-04 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%) Frame = +1 Query: 230836 ELAYEEIRARIFDGRFAPGQKV-SHRGLSDELGFGQMPVRSALHLLESEGLVVVIEKSGT 231012 + AY I I GR+ PG K+ S R + ++LG G+ +R L L +EG++ V ++S Sbjct: 24 QAAYVIISGWIATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGILEVHQRSAY 83 Query: 231013 YVASPTTSDLREIFEMRLALESTAAFL-AARSGVTAGLRDAAA 231138 V P+ + + E A E+TA + +A +TAG+R A A Sbjct: 84 RV--PSGMRISWVIEDHGANEATAPTIDSAAEALTAGVRSAYA 124 Score = 40.4 bits (93), Expect = 0.098 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Frame = -2 Query: 191956 VRRGDVRPGDTLPSTRLLAASLHVARGTVVDAYAQLIAEGFLESRGGAGTRVANALAEP- 191780 + G PGD LPS R + L + R + A+L+AEG LE + RV + + Sbjct: 34 IATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGILEVHQRSAYRVPSGMRISW 93 Query: 191779 --SPGNTSESPTPRVDPARHAL 191720 +E+ P +D A AL Sbjct: 94 VIEDHGANEATAPTIDSAAEAL 115 Score = 38.5 bits (88), Expect = 0.37 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Frame = +3 Query: 264453 YATLRQWVTVGRFLPGERLKI-RNVAAEMGVGQMPVRAALQRLAAEGAL 264596 Y + W+ GR+ PG++L R + ++G+G+ +R L +L AEG L Sbjct: 27 YVIISGWIATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGIL 75 >ref|NP_944326.1|gp18 Length = 698 Score = 47.4 bits (111), Expect = 8e-04 Identities = 23/49 (46%), Positives = 34/49 (69%) Frame = +1 Query: 243970 AAVIHDHEGKLLLQEKSSGEAWSLPAGGVELGESPQEAIFREVMEETGY 244116 A ++ K+LL ++ +G+ W LPAG VE GE+P+EA RE +EETG+ Sbjct: 581 AGIVFRAGDKVLLMKRPAGD-WGLPAGKVEDGETPEEAARRETLEETGH 628 >ref|NP_542278.1|unknown Length = 150 Score = 43.9 bits (102), Expect = 0.009 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Frame = +3 Query: 245580 GKGYMN-EALSAAIDYGFDTMQINRIEAQVHPQNASSIQVLETLGFVREGYQRQAGYWRG 245756 G+ +M E + Y F + R+ + V N +I+ E+ GFVREG RQAG+ Sbjct: 63 GRHWMTREYIIRVFAYPFIQLGYPRLNSFVSENNTDAIRFNESFGFVREGVMRQAGH--- 119 Query: 245757 AYHDLLQFSLLRSDC 245801 DL+ + +LRS+C Sbjct: 120 EGEDLIMYGMLRSEC 134 >ref|NP_758929.1|ORF37 Length = 303 Score = 43.5 bits (101), Expect = 0.012 Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 6/162 (3%) Frame = +1 Query: 175072 RELGIPTVTDRXXXXXXXXXXXXXXDPGFSEHSYGFRPGRRAHDAVLAAQSYV------Q 175233 R + P DR D + SY R G RA L Y + Sbjct: 72 RLISAPHFKDRVVHRAIYNVIEPLFDKTYIYDSYACRRGERAPTKALTGLQYFIKKVESK 131 Query: 175234 SGRRIVVDVDLEKFFDRVNHDILIDRLQKRIGDASVIWLIRAYLNSGIMDGGVVQQREQG 175413 G+ + D+ ++F ++H +L L+ +I + L+ I+D + G Sbjct: 132 HGKAYALKADISRYFSSIDHQVLKSILEAKIQCQRTLDLLFY-----IIDNSPCESMGVG 186 Query: 175414 TPQGGPLSPLLANVLLDEVDKELERRGHCFARYADDANVYVR 175539 P G S + ANV L E+D+ +A++A A Y+R Sbjct: 187 IPLGNLTSQIFANVYLHELDR--------YAKHALGAKHYIR 220 >ref|YP_006601.1|Gp21 Length = 3433 Score = 42.4 bits (98), Expect = 0.026 Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 2/111 (1%) Frame = +3 Query: 62148 VAGEVRALAQRSANAAKEIKTLIGASVERV-ESGARIVDGAGKTMEDIVTQV-KRVSDLI 62321 VA +V + Q ++A EI+ + +E V +S ++ +T+ D +T V K ++D + Sbjct: 857 VAQQVTDINQSIDDSASEIRQQVDGQIESVNKSITENINSVNQTLSDNITAVNKSITDAV 916 Query: 62322 AEISSSTAEQSTGVAQVDQAVVHLDNITQQNAALVEQSTAASESLKQQAAR 62474 ++I++S +Q +A V++ +T+ +AAL Q A SLKQ A+ Sbjct: 917 SDINTSVDQQ---IADVNKT------LTEGDAALKSQLQAVENSLKQSIAQ 958 Score = 41.2 bits (95), Expect = 0.057 Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 2/107 (1%) Frame = +3 Query: 60192 VAGEVRALAQRSANAAKEIKTLISASVERV-ESGARIVDGAGKTMEDIVTQV-KRVSDLI 60365 VA +V + Q ++A EI+ + +E V +S ++ +T+ D +T V K ++D + Sbjct: 857 VAQQVTDINQSIDDSASEIRQQVDGQIESVNKSITENINSVNQTLSDNITAVNKSITDAV 916 Query: 60366 AEISSSTAEQSTGVAQVDQAVVHLDNITQQNAALVEQSTAASESLKQ 60506 ++I++S +Q +A V++ +T+ +AAL Q A SLKQ Sbjct: 917 SDINTSVDQQ---IADVNKT------LTEGDAALKSQLQAVENSLKQ 954 >ref|YP_024873.1|nudix hydrolase motif containing protein Length = 578 Score = 42.0 bits (97), Expect = 0.034 Identities = 17/28 (60%), Positives = 21/28 (75%) Frame = +1 Query: 244033 WSLPAGGVELGESPQEAIFREVMEETGY 244116 W LPAG +E GE+P++A RE EETGY Sbjct: 71 WGLPAGSIEEGETPEDAARRETCEETGY 98 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 41.2 bits (95), Expect = 0.057 Identities = 60/230 (26%), Positives = 76/230 (33%), Gaps = 22/230 (9%) Frame = +1 Query: 280168 RATDSRQPHKRDRNQRNADAKHRHHHWPRARLIARIGENRRRLPHAESEEHHDEAGPRYR 280347 R +R PH R R A R H R R +G R R P +H P Sbjct: 7 RLRRARPPHTRTPAPRTR-AHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRAPSRP 65 Query: 280348 AAGKMR-----QAADRACLPAWLMD-------SVPETIHAVPDEQRPDAAGKQRAPQCLD 280491 AAG R + R P D + P A P A + RAP+C D Sbjct: 66 AAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRPRAPEC-D 124 Query: 280492 HRA*QAQRRALPHRSQHALTSQQVPAANGTEDIDERPARRNP----------AVSLGRDA 280641 A + RA R++ ED RR P V + R Sbjct: 125 RGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRR 184 Query: 280642 ELPDVNRRRKQQKTEHAGVRRRGQQRPYPERDIAEYLAHVPGRVPARRDS 280791 V RR + + G RR ++RP+PE A GR RR S Sbjct: 185 GARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRRHRRRAS 234 Score = 38.5 bits (88), Expect = 0.37 Identities = 38/107 (35%), Positives = 43/107 (40%), Gaps = 5/107 (4%) Frame = -1 Query: 324338 ARTLQPAAGHRRVFRVSRADHHGPMRNH-GVRRHPRRPARLLGRREDARAASGPQPVVPA 324162 AR P RR R R D ++ GV H RR AR +GRR RA GP Sbjct: 148 ARVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGP------ 201 Query: 324161 TVRAMGIRTLPRRRTH----RSERHVGRTFRADRAQAVLPAAVGPHR 324033 G PRRR H R+ R RT R R +A L HR Sbjct: 202 -----GAARRPRRRPHPEHPRAVRPRRRTGRRHRRRASLRPRHRRHR 243 >ref|NP_665964.1|putative plasmid partitioning protein Soj Length = 256 Score = 40.0 bits (92), Expect = 0.13 Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 10/178 (5%) Frame = +3 Query: 317658 KGGVGTSFAAGNIAFEIAEGFKRRVLLIDLNQQFADAAFL----VSDETPPSTLPQLCAQ 317825 KGG G + N+A + + VL+IDL+ Q L + D+ +L + + Sbjct: 9 KGGAGKTTTTLNVAGALNQ-LGNDVLVIDLDPQGHATEGLGFEDLYDDPERDSLFDVLPE 67 Query: 317826 IERLDGA---FLDASVAHVTENFHVLAGAGDPVKAAEMREDALEWILGVAAPRYDFVIFD 317996 +ER+D ++ + + A D + RE+ LE +L A R+D+V+ D Sbjct: 68 LERMDELEQLVVEHQEVDCVPSHETMINAEDALANVMKREERLEMLLDDADGRWDYVLVD 127 Query: 317997 VGVGINPLSMVALDRSDQIQIVLQPAMPHVRAGRRLLEILVSLGYS---TDQLRLIVN 318161 + L+ A+ + + I Q +RA L + L S+ + D+L L+ N Sbjct: 128 CPPNLGVLTDNAIVATGNVLIPAQAKSTSIRAIELLFKQLRSIESAFGPVDELALVAN 185 >ref|NP_958295.1|hypothetical protein Length = 215 Score = 40.0 bits (92), Expect = 0.13 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Frame = -3 Query: 200319 PTPTNACRPNWRPPW--PDVPLVMSKPFSRTNSARIPPPRSSEPLMPHRLPDRLPVVSPT 200146 P+PT C +WR P P P + P S ++ P PRS+ P P P R P + T Sbjct: 3 PSPTTFCSGSWRSPGSAPTAPHCSASPASCSDG---PAPRSTRPPSPPCRPSRPPCTAGT 59 Query: 200145 LECPVYAPAEPTRSLLR 200095 PA P R+ R Sbjct: 60 PTACSAGPAVPMRAARR 76 >ref|NP_817692.1|gp15 Length = 1213 Score = 39.7 bits (91), Expect = 0.17 Identities = 41/138 (29%), Positives = 52/138 (37%), Gaps = 2/138 (1%) Frame = -2 Query: 45727 SDEASAAVDMNRLAVHRSIAHEEHHCRAHFFGGSQPMQRQFVFQCVDVRVTTFAERASEQ 45548 +D AS A D R A R A EE R G S R+ AER + Sbjct: 57 ADRASDAYDKARDAAGRLRAEEEKLKRLRDEGASND------------RIVAQAERVEKA 104 Query: 45547 RRVGGAGRNGVDTARRKFQN--QPSGQRLHRGRCRRKNGGAIGIGSVGQHAGNKRDGGIG 45374 RR A R+++ Q +GQ + G GIG+ GQ A N+ GG Sbjct: 105 RRAEVRAVRDATDAYREYEQAAQSAGQNAGQNFAGGLRGSLSGIGAAGQDAANEFVGGFA 164 Query: 45373 RQAVTQRAQSMDGGPNAL 45320 + R S GGP L Sbjct: 165 GSSALLRLGSA-GGPIGL 181 >ref|YP_024421.1|Hypothetical protein Length = 741 Score = 39.3 bits (90), Expect = 0.22 Identities = 39/135 (28%), Positives = 51/135 (37%), Gaps = 3/135 (2%) Frame = +2 Query: 332780 SGGAQVNFTNASGGAINGSVVLAPSGTPGAGNTFTNAGTVTGN-VSLGAALGTSNTFNAQ 332956 +GG + A GA +G+ SG G G N G +GN A +GTSN NAQ Sbjct: 603 NGGNNSSNVGAGAGASSGNAASGVSGGGGGGTGPGNGGWRSGNGGGSNAGVGTSNGNNAQ 662 Query: 332957 TGSSVGLGVDAXXXXXXXXXXXXXXAVGSPANGTIAVDTYGNFNNLGVQGGTWDLTGAST 333136 G G A S A+G A GN N G G + G T Sbjct: 663 AAGGGGGGNSAVWWDNAAAGKGGDGTASSGASGGNAT---GNGNGGGGGSGGTSILGNGT 719 Query: 333137 --ATNASLTGGTAIV 333175 + + +GG I+ Sbjct: 720 DGSAGGNGSGGKVII 734 >ref|NP_818617.1|gp79 Length = 151 Score = 38.5 bits (88), Expect = 0.37 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 7/73 (9%) Frame = -1 Query: 336248 VPPTFVPSEPPAPATFSAPVPSAEPLPAIK--PPPLSVVPPENVFAPS-----SVVVPLP 336090 +PP +PS P P+ AP+P P+P+++ PP S P APS S VVP Sbjct: 57 IPPANLPSAPLQPS--PAPMPGGSPIPSVEGNMPPRSNGPSGRPSAPSQRPGGSTVVP-- 112 Query: 336089 VCARPPLPAITPP 336051 P P ITPP Sbjct: 113 --TVPTGPPITPP 123 >ref|NP_861819.1|NudE nudix hydrolase Length = 152 Score = 38.1 bits (87), Expect = 0.49 Identities = 17/28 (60%), Positives = 19/28 (67%) Frame = +1 Query: 244033 WSLPAGGVELGESPQEAIFREVMEETGY 244116 W +P G VE GESP EA RE EETG+ Sbjct: 42 WDIPKGRVEPGESPIEAAIRECEEETGF 69 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,309,525,072 Number of Sequences: 14420 Number of extensions: 25450012 Number of successful extensions: 96392 Number of sequences better than 0.5: 36 Number of HSP's better than 0.5 without gapping: 12335 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 96156 length of database: 3,019,461 effective HSP length: 129 effective length of database: 1,159,281 effective search space used: 130699658502 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig282 (314,127 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 229 1e-58 ref|NP_818300.1|gp250 92 3e-17 ref|NP_945089.1|gp58 90 1e-16 ref|NP_612844.1|Gp15 protein 64 6e-09 ref|NP_046572.1|ABC transporter 60 1e-07 ref|NP_046584.1|putative transglycosylase 57 7e-07 ref|YP_024984.1|adenylosuccinate synthetase 54 8e-06 ref|YP_052989.1|Hypothetical protein 54 8e-06 ref|NP_817650.1|gp61 52 4e-05 ref|YP_164732.1|orf97 52 4e-05 ref|YP_024964.1|putative prophage repressor protein 49 2e-04 ref|NP_112710.1|ORF47 49 3e-04 ref|NP_108727.1|minor structural protein 3 49 3e-04 ref|NP_076626.1|endopeptidase 49 3e-04 ref|NP_046877.1|putative non-heme haloperoxidase 48 4e-04 ref|NP_818239.1|gp188 48 4e-04 ref|NP_663686.1|structural protein 48 6e-04 ref|NP_536425.1|putative helix-turn-helix transcriptional regulator 48 6e-04 ref|NP_945111.1|gp80 48 6e-04 ref|NP_690787.1|immunity repressor 47 8e-04 ref|NP_064745.1|gp7 47 0.001 ref|NP_040602.1|Tail fiber protein 47 0.001 ref|NP_777327.1|hypothetical protein 45 0.003 ref|NP_958209.1|gene 33 protein 42 0.024 ref|NP_695118.1|putative tail protein 42 0.041 ref|NP_056689.1|putative minor tail protein 41 0.070 ref|NP_958267.1|hypothetical protein 41 0.070 ref|YP_006616.1|Gp36 41 0.070 ref|NP_046933.1|gp38 41 0.070 ref|NP_859265.1|hypothetical protein 40 0.092 ref|NP_612899.1|hypothetical protein 40 0.092 ref|NP_859099.1|hypothetical protein 40 0.092 ref|NP_817697.1|gp19 40 0.092 ref|NP_037684.1|gp24 40 0.092 ref|NP_050557.1|hypothetical protein 40 0.092 ref|NP_049519.1|putative tail fiber protein 40 0.092 ref|NP_818167.1|gp94 40 0.12 ref|NP_075512.2|hypothetical protein 39 0.20 ref|NP_803346.1|tail fiber protein 39 0.20 ref|YP_006905.1|Hypothetical protein 39 0.20 ref|YP_077230.1|Hypothetical protein 39 0.27 ref|NP_817477.1|gp27 39 0.27 ref|NP_700411.1|regulatory protein 38 0.46 >ref|NP_945090.1|gp59 Length = 429 Score = 229 bits (583), Expect = 1e-58 Identities = 138/422 (32%), Positives = 211/422 (50%), Gaps = 1/422 (0%) Frame = -2 Query: 188306 PSSSLPAERSKAAAIFRVTAGNXXXXXXXXXXXFYATQIANVFFPAQSEFASLMMTFAVF 188127 PS+S R A+ V GN F++ IA +FFP+ + SL+++ + Sbjct: 12 PSASSDTHRR---AVIAVIVGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLLSVSTI 68 Query: 188126 GAGFLMRPLGAIVLGAYIDEVGRRKGLIVTLSIMASGTILIAFVPGYATIGLLAPVLVLI 187947 G GF MRP+G IV+G D+VGRR L VT+++M +GT +I F P Y GL AP+++++ Sbjct: 69 GVGFFMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVV 128 Query: 187946 GRLLQGFSAGAELGGVSVYLAELATPGRKGFFTSWXXXXXXXXXXXXXALGFALNQWLSA 187767 RLLQGFSAG E+GG + YL E R G++TSW L + + L Sbjct: 129 ARLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDE 188 Query: 187766 SQIAAWGWRVPFFVGCMIVPFIFMLRRNLEETQEFKARKHRPGMKEVFGTLVQNWXXXXX 187587 QI +WGWR+PF +G + P +R L + F A + V + Sbjct: 189 QQIESWGWRIPFLLGLGLGPVGIYIRSRLND-PGFPADERLGECAPVVEVVRSFSREALV 247 Query: 187586 XXXXXXXXXTSFYLITVYAPTFGKTVLHLSTADSLLVTLCVGVSNFVWL-PIGGALSDRI 187410 Y++ Y PT+ VL L ++ + L VG S +++ P+ G LSD Sbjct: 248 GFGLVVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVL-VGASIVLFVTPLIGHLSDLF 306 Query: 187409 GRRPLLVGMTMLTVVTAYPALSFLAHAPSFVNMLLVLLWLSFMYGMYNGAMVVALTEVMP 187230 GRR L G ++ +V AYP + L AP +L+ + + Y G ++ AL+++ P Sbjct: 307 GRRWFLAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFP 366 Query: 187229 VQVRVAGFSLAYSLATAVFGGFTPAISTGLIHMTGDKAAPGYWMSFAAVCALLATFALYR 187050 V G S++Y+LA FGGF+ AI T I T + AP +++ AA+ +L++ Sbjct: 367 DGVLSTGISISYNLAVITFGGFSAAIITWAIATTHNNLAPAFYVIAAAIVSLISVSLWQP 426 Query: 187049 RR 187044 RR Sbjct: 427 RR 428 Score = 40.4 bits (93), Expect = 0.092 Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 17/141 (12%) Frame = -3 Query: 154957 GAFVFGTMIGAFVLGYLGDVIGRKRMIVIGSVVLAGFTLAASRATGLE--------QLLV 154802 G F IG V+G + D +GR+ + + ++ T A + ++V Sbjct: 69 GVGFFMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVV 128 Query: 154801 LRFLAGIGIGGVVPNAIAYTTEFAPKRWRATWVTLMYSGYTIGSSVGGLVSAWLV----- 154637 R L G GG + A AY E P + + + + + +++ ++V Sbjct: 129 ARLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDE 188 Query: 154636 ---PKFGWQVVFVIG-GLAPL 154586 +GW++ F++G GL P+ Sbjct: 189 QQIESWGWRIPFLLGLGLGPV 209 >ref|NP_818300.1|gp250 Length = 442 Score = 91.7 bits (226), Expect = 3e-17 Identities = 94/361 (26%), Positives = 153/361 (42%), Gaps = 30/361 (8%) Frame = +3 Query: 20799 WGDEGKGKIVDWLT--DHAQGVVRFQGGHNAGHTLII-GGKKTILRLIPSGIMREGVACY 20969 +GD GKG VDWL D + VVR GG AGH +++ G S + G + Sbjct: 14 YGDAGKGTTVDWLCGGDPSTLVVRHNGGSQAGHNVVLDDGTHHEFSQFGSAFL-HGAVTF 72 Query: 20970 IGNGVVLSPEALFKEIGELEEAG----VNVRDRLFISEATTLILPYHIAIDQAREARKGA 21137 + V+++P + +E L+E + +F+ ++ PYH+A+ + + +G Sbjct: 73 LSRYVMVNPLDMIEEAKHLDEVSQLETTDALSMMFVDAQAKVVTPYHVALQRLKAYARG- 131 Query: 21138 GKIGTTGRGIGPAYEDKVG--RRALRVQDLFD--AKTFADRLRENLDYHNFVLTQYLGGA 21305 G+ G+GIG A + +RV L D +T ++LR H + + G Sbjct: 132 ---GSCGKGIGEAVRQHLAMPNLTIRVGHLRDLSLRTSLEQLR-----HYLLNAADVAGR 183 Query: 21306 AVDFQATLDTMLGYADRLKPMVADVSRRLY----------DAN-------NAGQNLLFEG 21434 D + +D + DR + + ++ R Y D + G ++FEG Sbjct: 184 REDDDSFIDRTV-LEDRF--LSSHLAERYYAWTKRVGIVDDGDTWLGRYLRGGHTVIFEG 240 Query: 21435 AQGTLLDIDHGTYPFVT-SSNCXXXXXXXXXXXXPQKLNYILGITKAYCTRVGSGPFPSE 21611 AQG LLD G +P+ T S+ Q LG+ ++Y TR G+GPF +E Sbjct: 241 AQGVLLDEWAGFHPYTTWSTTTPQNALALTTAARSQVAPINLGVVRSYATRHGNGPFVTE 300 Query: 21612 LYDADNPQRQDQIGVTLANVGKEFGSVTGRPRRTGWLDAAALRRSIQING-VSGLCMTKL 21788 + D + + G+ R G LD ALR + + G + GL +T L Sbjct: 301 DPELDFDEPHNHEGMWQGKF------------RQGHLDLVALRYAASVCGQLDGLVVTHL 348 Query: 21789 D 21791 D Sbjct: 349 D 349 >ref|NP_945089.1|gp58 Length = 297 Score = 90.1 bits (222), Expect = 1e-16 Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 7/293 (2%) Frame = -1 Query: 183591 IPPLKAIIAFESVARTKSVNRAAEELGLTASAVSHQLSNLEAQIGQPLFQRSGRGLVLTP 183412 +PPL+ ++ F++ AR + RAAEEL + AVS Q+ LE +G LF R + L LT Sbjct: 6 LPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTR 65 Query: 183411 TGERYLADVTGSLADLSRATERASSRTEVDILRVHSSPSFGLMWLLPRLSSFQEANGDIQ 183232 G++Y V LAD AT L + + ++L R++ F + ++ Sbjct: 66 AGQQYADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVS 125 Query: 183231 LNLACSYENVSFSNGFYDIDVRHGYGNWD----NLEVKTVRGEFIAPLASPQYLERHPVR 183064 + + + + +DI V Y D + + E + +P +L V Sbjct: 126 VRILVREGVFNLNAAEFDIGV---YYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRV- 181 Query: 183063 APEDLLAHRLIYSETPLVQ---WKQWFGRTGVPLAAQKTFDFSFDRSYMSLETAALGLGI 182893 P+DL+ L+ +E Q W+ WF T + + S + + L+ A G G Sbjct: 182 PPQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGA 241 Query: 182892 ALESLMLASVKIRQGLLVPVFGERHAVEVGAHHLVYPRQNAELPRVKRFLAWI 182734 L + + + G LV + + HA GA+ +++P + P V F W+ Sbjct: 242 ILGWKHMITPLVESGKLV-LASDAHASFGGAYQVIWPADRRDTPAVTMFREWL 293 Score = 58.2 bits (139), Expect = 4e-07 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 1/141 (0%) Frame = +1 Query: 183898 FRAVVETGSFRKAAEAVSLSQPALSRRIDKLEDALGVRLFERTTRRVALTTVGRVFAQSA 184077 F A G+F +AAE ++++Q A+S+++ KLE LG LF R + + LT G+ Q A Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ---QYA 71 Query: 184078 EQXXXXXXXXXXGIRDVSSSRLGH-VTIACVPSVAYYFLPPIIARYHQRFPRIRVKLLDA 184254 ++ V + H +TIAC A FL IA + P + V++L Sbjct: 72 DRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRIL-- 129 Query: 184255 GANEVLGAVISGEADFGVSFI 184317 E + + + E D GV +I Sbjct: 130 -VREGVFNLNAAEFDIGVYYI 149 Score = 55.8 bits (133), Expect = 2e-06 Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 1/127 (0%) Frame = +3 Query: 96426 PMTPDQ-LITFAAVAEHLNISRAAVALHLSQPAVSGQLRLLQDEFGEPLYQRDGRGIRLT 96602 P+ P Q L+ F A A H N +RAA L+++Q AVS Q+ L+ G L+ RD + + LT Sbjct: 5 PLPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLT 64 Query: 96603 PVGEQLAQYAKAQRDTFAQARAFRDAVRGLEAGTLRIGASTTPASYLLPYLIAAFQPHAP 96782 G+Q A A +A A ++ +L I ++ A+ L IA F P Sbjct: 65 RAGQQYADRVHAILADCVEATAL--VMKEQTPHSLTIACASGTATLFLADRIAEFSAEHP 122 Query: 96783 RVSIQTM 96803 VS++ + Sbjct: 123 EVSVRIL 129 Score = 42.7 bits (99), Expect = 0.019 Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 1/167 (0%) Frame = -1 Query: 191157 LLALADFNLVARHGSFGEAARVAARPKATLSRRVAELENSLSLRLFERGSRGVKLTQEGR 190978 L L F+ ARHG+F AA + +S++V +LE L LF R ++ + LT+ G+ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 190977 ALYERTGXXXXXXXXXXXXXXXXSERPRGRLRISAPMLFSQFAMGRLVATFALRYPDVRL 190798 +R E+ L I+ + + +A F+ +P+V + Sbjct: 69 QYADRV--HAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 190797 EVTTEDRPVDMIEEGYDL-VIRVNPDPDESLIGRVILRDRLVVVAKP 190660 + + ++ +D+ V + P + G I+ + + P Sbjct: 127 RILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAP 173 Score = 40.8 bits (94), Expect = 0.070 Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 1/147 (0%) Frame = +1 Query: 156979 LNLLKVFDALLKKRHVTQAGVSIGLSQPAMSYALSKLRELFEDPLFVRTGRGMEPTPRAQ 157158 L L FDA + + T+A + ++Q A+S + KL LFVR + + T Q Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 157159 ALGEPV-ARLLDLVQTEILPMPEFRPAESSRNFVLCMSDIGEMVFLPRLESFLDKAAPHV 157335 + V A L D V+ L M E P + + C S + R+ F +A H Sbjct: 69 QYADRVHAILADCVEATALVMKEQTPHSLT---IACASGTATLFLADRIAEF---SAEHP 122 Query: 157336 SIKTVALSMPELEEGLASGDVDLAIGY 157416 + +V + + E L + + D+ + Y Sbjct: 123 EV-SVRILVREGVFNLNAAEFDIGVYY 148 >ref|NP_612844.1|Gp15 protein Length = 983 Score = 64.3 bits (155), Expect = 6e-09 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Frame = +2 Query: 413 KNKGVNIGGTAGEAVKAAADGRVVYSGNGLRGYGNLIIIKHDATYLTAYAHNRALMVKEG 592 K+ G++ G G V+ + DG V+ YG + + H +T YAHN L+V EG Sbjct: 877 KHDGIDFGTPIGTPVRVSKDGVVIKRRELTTSYGKYLFVDHGGGLITIYAHNSELLVNEG 936 Query: 593 DAVTKGQKIAEMGNS-DADRVMLHFEVRRQGKP 688 D V +GQ IA+ GN+ ++ LH+E+R G P Sbjct: 937 DRVKRGQIIAKTGNTGNSTGPHLHWELRVNGIP 969 >ref|NP_046572.1|ABC transporter Length = 705 Score = 59.7 bits (143), Expect = 1e-07 Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 5/177 (2%) Frame = +2 Query: 172250 GYTPEVDILHGVSLTVGAIDIVTILGPNGCGKSTLLKAIAGFVLPRAGSVTIQGTDVARV 172429 G P I+ ++L + D V I+G +G GKST K+++ S+ + G D+ R Sbjct: 491 GADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRY 550 Query: 172430 PVHRKIREYGIGFVPQTDNVFASLTVRENLMLGGQSMSAFPREARIDELCEQYPVLRRRH 172609 H IR+ I ++ + +F T++ENL +G A I C ++ + Sbjct: 551 D-HLSIRKR-IVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQ 607 Query: 172610 RSL-----AGALSGGERQIVSLARALMPRPVLLLLDEPSAGLSPKMVDEVFDAIVRM 172765 S LS G++Q ++LARA++ +P +L+LDE + + P +++ + RM Sbjct: 608 YSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM 664 Score = 57.8 bits (138), Expect = 6e-07 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 1/190 (0%) Frame = -2 Query: 201299 PAKVILHEVDLRIGRGQTVGVIGESGSGKTTLAKVIAGLVPATGGAILLDGEPLARDIGK 201120 P + I+ +++L + R V +IGESG+GK+T AK ++ L +I L+G + Sbjct: 494 PMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDI-----N 548 Query: 201119 RTKEQHRRVQIVFQNADTALNPVHTVERTLARPLAFYHGIKGARARQRVAELL-ELVRLP 200943 R R +IV+ + + L E + + I+ A + E + L + Sbjct: 549 RYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQY 608 Query: 200942 PAVASRRTGELSGGQKQRVNLARALAAEPDLILCDEVTSALDTVVGAAIIELLRDLQAKL 200763 S LS GQKQR+ LARA+ +P +++ DE S +D I E L + + Sbjct: 609 SYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCLI 668 Query: 200762 GVSYVFITHD 200733 + ITH+ Sbjct: 669 ----ILITHN 674 Score = 56.2 bits (134), Expect = 2e-06 Identities = 51/210 (24%), Positives = 101/210 (48%), Gaps = 6/210 (2%) Frame = +2 Query: 76934 VRSVNLTVRQGELFALLGSSGCGKSTLLRMLAGLETVTSGKILIDGEDLAQMP--PYKRP 77107 V +NL + + + ++G SG GKST + L+ L V I ++G D+ + ++ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 77108 VNMMFQSYALFPHMSVESNVAFG--LKQEGTPKAELKARVASAL-ELVQMGKYA-KRKPH 77275 + + ++ LF +++ N+ G Q A + ++ + L + Y Sbjct: 559 IVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGS 617 Query: 77276 QLSGGQQQRVALARSLVKRPKLLLLDEPMSALDKQIRQRTQIELVNILNKVGVTCIMVTH 77455 LS GQ+QR+ALAR+++ +P++L+LDE +S +D T++ + L+++ I++TH Sbjct: 618 NLSTGQKQRLALARAILHQPQVLILDESLSNIDP---DNTKL-IYETLHRMDCLIILITH 673 Query: 77456 DQEEAMTMANRLAVMSEGQIVQIGSPNEVY 77545 + +L + I S N+ Y Sbjct: 674 NDPSNFKYNKKLVFRNNRIIESSYSENKEY 703 Score = 44.7 bits (104), Expect = 0.005 Identities = 19/58 (32%), Positives = 41/58 (70%) Frame = +3 Query: 56211 ADVAPGWKLRVLLAQALFSKPDVLLLDEPTNNLDINSIRWLEQTLNEYNSTMIIISHD 56384 ++++ G K R+ LA+A+ +P VL+LDE +N+D ++ + + +TL+ + +I+I+H+ Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCLIILITHN 674 Score = 41.2 bits (95), Expect = 0.054 Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 6/189 (3%) Frame = -2 Query: 276917 LDGIDLTVRPGECVGLCGENGAGKSTLMKVLSGVYPHGTWDGEIRWEGAPLAASGVRDTE 276738 ++ I+L + + V + GE+G GKST K LS +Y D I G D Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYK--VPDKSIYLNGL--------DIN 548 Query: 276737 RAGIVIIHQELMLVPEL------SVAENIFLGNEITLPGGRMNFAAMVQRAEELLRELRI 276576 R + I + ++ + E ++ EN+ +G EI N M Q E + + Sbjct: 549 RYDHLSIRKRIVYIDENPFLFKGTIKENLCMG-EIFDQNEIENACIMSQCHEFICNLDKQ 607 Query: 276575 DTINVAQPVMNYGGGHQQLIEIAKALNKHAKLLILDEPSSSLSASETRILLDIVRDLKRR 276396 + +++ N G +Q + +A+A+ ++LILDE S++ T++ I L R Sbjct: 608 YSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKL---IYETLHRM 664 Query: 276395 GVACVYISH 276369 + I+H Sbjct: 665 DCLIILITH 673 Score = 39.3 bits (90), Expect = 0.20 Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 1/193 (0%) Frame = -2 Query: 276203 DVVLDVRHVTCRDVTNARRKRVDDVSFSVRRGEIVGVAGLVGAGRTELMQAIFGAYPGAC 276024 D + +++ V + R V+D++ + R + V + G G G++ +++ Y Sbjct: 478 DFIQNIKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYK-VP 536 Query: 276023 TASVTMNGKPLSIRSPADAIRAGIAMVPEDRKRHGIVPQLGVGHNITLAVLRRFAARGRI 275844 S+ +NG ++ R +IR I + E+ P L G + + I Sbjct: 537 DKSIYLNGLDIN-RYDHLSIRKRIVYIDEN-------PFLFKGTIKENLCMGEIFDQNEI 588 Query: 275843 DAAAELDTIRTEMQRLSVRAAHPFLSIAS-LSGGNQQKAVLAKMLLTEPQVLILDEPTRG 275667 + A + + L + ++ S LS G +Q+ LA+ +L +PQVLILDE Sbjct: 589 ENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSN 648 Query: 275666 VDVGAKAEIYRLI 275628 +D IY + Sbjct: 649 IDPDNTKLIYETL 661 Score = 38.5 bits (88), Expect = 0.35 Identities = 19/50 (38%), Positives = 33/50 (66%) Frame = +2 Query: 125015 VHDVKLNLRRGETLGIVGESGSGKSTLAATVLGLQRPAEGSIEIDGMPLD 125164 V D+ L L R + + I+GESG+GKST A ++ L + + SI ++G+ ++ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDIN 548 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 57.4 bits (137), Expect = 7e-07 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 4/109 (3%) Frame = +2 Query: 395 NGFDDAKNKGVNIGGTAGEAVKAAADGRVVYSGNGLRGYGNLIIIKHDATYLTAYAHN-R 571 +G + +KG + AG A+K+ G+V +G + GN ++IK D + Y H Sbjct: 1573 SGLRSSPHKGTDFAAKAGTAIKSLQSGKVQIAGYS-KTAGNWVVIKQDDGTVAKYMHMLN 1631 Query: 572 ALMVKEGDAVTKGQ---KIAEMGNSDADRVMLHFEVRRQGKPVDPLKYL 709 VK G +V GQ K+ GNS + LH ++ + GK +DP KY+ Sbjct: 1632 TPSVKAGQSVKAGQTIGKVGSTGNSTGNH--LHLQIEQNGKTIDPEKYM 1678 >ref|YP_024984.1|adenylosuccinate synthetase Length = 343 Score = 53.9 bits (128), Expect = 8e-06 Identities = 68/282 (24%), Positives = 111/282 (39%), Gaps = 10/282 (3%) Frame = +3 Query: 20796 QWGDEGKGKIVDWLTD-HAQGVVRFQGGHNAGHTLIIG-GKKTILRLIPSGIMREGVA-C 20966 Q+G GKG I +L + + V NAGHT I G+K + +++P+GI+ + Sbjct: 11 QFGSTGKGLIAGYLAEKNGYDTVINANMPNAGHTYINAEGRKWMHKVLPNGIVSPNLKRV 70 Query: 20967 YIGNGVVLSPEALFKEIGELEEAGVNVRDRLFISEATTLILPYHIAIDQAREARKGAG-- 21140 +G G V S L +EI ++ L + LI P +D+ + G Sbjct: 71 MLGAGSVFSINRLMEEIEMSKD--------LLHDKVAILIHPMATVLDEEAHKKAEVGIA 122 Query: 21141 -KIGTTGRGIGPAYEDKVGRRALRVQDLFDAKTFADRLRENLDYHNFVLTQYLGGAAVDF 21317 IG+TG+G A +K+ R +N ++ + Sbjct: 123 TSIGSTGQGSMAAMVEKLQRDPT---------------------NNTIVAR--------- 152 Query: 21318 QATLDTMLGYADRLKPMVADVSRRLYD-ANNAGQNLLFEGAQGTLLDIDHGTYPFVTSSN 21494 + Y R+ V V +D A A + +L EGAQG L ++ YP+ TS + Sbjct: 153 -----DVAQYDGRIAQYVCTVEE--WDMALMASERILAEGAQGFSLSLNQEFYPYCTSRD 205 Query: 21495 CXXXXXXXXXXXXPQKLNYILGITKAYCTRVG---SGPFPSE 21611 C LN ++G + + RVG G +P + Sbjct: 206 CTPARFLADMGIPLPMLNKVIGTARCHPIRVGGTSGGHYPDQ 247 >ref|YP_052989.1|Hypothetical protein Length = 343 Score = 53.9 bits (128), Expect = 8e-06 Identities = 68/282 (24%), Positives = 111/282 (39%), Gaps = 10/282 (3%) Frame = +3 Query: 20796 QWGDEGKGKIVDWLTD-HAQGVVRFQGGHNAGHTLIIG-GKKTILRLIPSGIMREGVA-C 20966 Q+G GKG I +L + + V NAGHT I G+K + +++P+GI+ + Sbjct: 11 QFGSTGKGLIAGYLAEKNGYDTVINANMPNAGHTYINAEGRKWMHKVLPNGIVSPNLKRV 70 Query: 20967 YIGNGVVLSPEALFKEIGELEEAGVNVRDRLFISEATTLILPYHIAIDQAREARKGAG-- 21140 +G G V S L +EI ++ L + LI P +D+ + G Sbjct: 71 MLGAGSVFSINRLMEEIEMSKD--------LLHDKVAILIHPMATVLDEEAHKKAEVGIA 122 Query: 21141 -KIGTTGRGIGPAYEDKVGRRALRVQDLFDAKTFADRLRENLDYHNFVLTQYLGGAAVDF 21317 IG+TG+G A +K+ R +N ++ + Sbjct: 123 TSIGSTGQGSMAAMVEKLQRDPT---------------------NNTIVAR--------- 152 Query: 21318 QATLDTMLGYADRLKPMVADVSRRLYD-ANNAGQNLLFEGAQGTLLDIDHGTYPFVTSSN 21494 + Y R+ V V +D A A + +L EGAQG L ++ YP+ TS + Sbjct: 153 -----DVAQYDGRIAQYVCTVEE--WDMALMASERILAEGAQGFSLSLNQEFYPYCTSRD 205 Query: 21495 CXXXXXXXXXXXXPQKLNYILGITKAYCTRVG---SGPFPSE 21611 C LN ++G + + RVG G +P + Sbjct: 206 CTPARFLADMGIPLPMLNKVIGTARCHPIRVGGTSGGHYPDQ 247 >ref|NP_817650.1|gp61 Length = 274 Score = 51.6 bits (122), Expect = 4e-05 Identities = 35/123 (28%), Positives = 58/123 (47%) Frame = -2 Query: 298919 TVTSTDGVKLAVQESGDPDGVPVILIHGLLGSRLNWDAQVQSPELRGFRIITYDLRGHGL 298740 T+ DG ++ V + G GVP++ +HGL S L ++ + RGF + D HG Sbjct: 7 TIVLDDGFRVGVSQVGT--GVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGR 64 Query: 298739 SDKPSGAQPYRDGTRWGDDLAAVIDGAHARKPVVVGWSLGGVVISNYLARYGDRAIAGAV 298560 +D + TR +D + V VG S+GG +++ RY +R +A A+ Sbjct: 65 TDSLPFGHTVEEMTR---VTLRALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLA-AI 120 Query: 298559 YVD 298551 +D Sbjct: 121 LLD 123 Score = 38.1 bits (87), Expect = 0.46 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 4/105 (3%) Frame = -2 Query: 259352 VVMLHGLRSYAHTWAPVADALVDR-YRVVALDQRGRGLSDWDP---RRDYYAAAYVRDLD 259185 +V LHGL A + + L R + V ALD G +D P + +R LD Sbjct: 27 LVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFGHTVEEMTRVTLRALD 86 Query: 259184 ALVRALGLRRFVLVGHSMGGANAFVYAASQAERHAERLAGLVIED 259050 AL G+ + V VGHSMGG A A R+ ER+ ++ D Sbjct: 87 AL----GIDQAVFVGHSMGGG----MVAEIAPRYPERVLAAILLD 123 >ref|YP_164732.1|orf97 Length = 2112 Score = 51.6 bits (122), Expect = 4e-05 Identities = 56/230 (24%), Positives = 94/230 (40%), Gaps = 6/230 (2%) Frame = -2 Query: 304184 LANSATAIGTVAVAQGNTALAIGRQSAAVGDFSMALGNVADAHGTSSIALGHSALASGDR 304005 +A+ AT G A ALA Q+ GD + + N A + ++ G +A + D+ Sbjct: 694 VASQATTTGDNASYAAAQALATANQAQTAGDSATRVANNASQAASGAVIAGSTASVNADK 753 Query: 304004 SVAIGGANPTSSDGVSAGASYDAATQTRAG----GTQSVAIGAGAQTNDNNQVAIGSGSV 303837 +V++ AN S G +A + A+Q +G G+ + I A T N + G + Sbjct: 754 AVSV--ANQAKSAGDNATRVANNASQAASGAILAGSTATVIANKASTVANEAKSAGDNAT 811 Query: 303836 GANNGGTPVFGGTAAPVGGAVSFGALGSERQLKNVAAGAADTDAVNV-QQLKNVNSTLST 303660 N T V + ++ SE +++ A A + A N Q + V S S Sbjct: 812 SVANNATSVANSAKSTADSTYAYA--NSEIAVQSTAITKAQSTADNAFSQAQAVGSQASA 869 Query: 303659 GIGNVDARVTSVGNSLSTTISNVDQRVTSVGNSLSTS-IVTATKNVVKYT 303513 I + + + ST + + T++ N TS VT K+ K T Sbjct: 870 EIA---VQSNATAKAQSTADNAFSKATTAIDNGKVTSQAVTDLKDGSKLT 916 Score = 40.4 bits (93), Expect = 0.092 Identities = 59/249 (23%), Positives = 94/249 (37%), Gaps = 15/249 (6%) Frame = -2 Query: 302291 NTAAIAGLQQDALQFDPTLGAFNAARGSAPTKLTNVADGNVAAGSTDAVNGGQLSGVKTT 302112 N AA AG + D A A++ D AA S A + K T Sbjct: 365 NNAASAGAIAQSAASDAASQALAASQAGE--------DAKSAAVSAQAAGEDAKAQAKDT 416 Query: 302111 LEQQI--TNVSNQAGEAVKN---VVKYDVDASGNRLNSVSLVGGDATSAVVLKNVAAGTS 301947 ++ I +++SN+ A+ +V D + + + G T+A + N+A GT+ Sbjct: 417 RDRIIYYSSISNEKDVAIPGKYIIVNTDTYIKNGTIKTAHIGDGAITNAKIA-NLAVGTA 475 Query: 301946 DTDAVNVKQLKDVQSNLNQLGALAVQYDDSSKSTITLGGAGGTRITNVQAGTL--SATST 301773 QL+D ++G LAV + IT G ++ AGT+ S S Sbjct: 476 --------QLEDAAITRAKIGNLAVGTAQIEDAAITDAKVGNLSANHLNAGTIDFSVISG 527 Query: 301772 DAVNGSQL----YATNQQVSKNTTDISNLQGSVT----NIANGKAGLVQQQDPNGAITVG 301617 +N S++ +Q DIS G+VT N N + DPN + Sbjct: 528 IHINASEIDVGKIVADQIFVNGLGDISKNLGTVTSGNINGTNVNDDIDDLNDPNSMSVIE 587 Query: 301616 KDSGGTSVN 301590 K + + N Sbjct: 588 KQTRASQFN 596 Score = 39.3 bits (90), Expect = 0.20 Identities = 58/244 (23%), Positives = 91/244 (37%), Gaps = 40/244 (16%) Frame = -2 Query: 302204 PTKLTNVADGNVAAGSTDAVNGGQLSGVKTTLEQQITNVSNQAGEAVKNVVKYDVDASGN 302025 P + + GN+A G+ NG + +L N+ + A + K N Sbjct: 1311 PVIMKSANIGNMAVGTAQIANGAITNAQIGSLAVDTANIKDAAISSAK---------IAN 1361 Query: 302024 RLNSVSLVGGDATSAVVLKNVAAGTSD------TDA------VNVKQLKDVQSNLNQLGA 301881 + +G A + + +A GT+ TDA V Q+KD N ++ Sbjct: 1362 LAVGTAQIGDGAITNAKIGKLAVGTAQIANGAITDAQIGSLAVGTAQIKDEAVNSAKIAK 1421 Query: 301880 LAV---QYDDSSKSTITLGG-AGGT------RITNVQAGTLSATSTDA-------VNGSQ 301752 LAV Q D + + +G A GT IT+ Q G +SA A + G Sbjct: 1422 LAVGTAQIGDGAITNAKIGNLAVGTAQIANAAITDAQVGNVSANKLTAGIIDFNTITGKN 1481 Query: 301751 LYATNQQVSKNTTD---ISNLQGSVTNIANGKAGLVQQ--------QDPNGAITVGKDSG 301605 + A+N +TD + L N+ N AG ++ PNG+ T D+ Sbjct: 1482 INASNITTGTLSTDRLNVGTLSALSANLGNVTAGSLKGVNIIANSFSTPNGSFTT--DAS 1539 Query: 301604 GTSV 301593 G V Sbjct: 1540 GNVV 1543 >ref|YP_024964.1|putative prophage repressor protein Length = 244 Score = 49.3 bits (116), Expect = 2e-04 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 7/131 (5%) Frame = +1 Query: 116164 AVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTMQ 116343 A +G +IR LR+ LTL + A + GIS+ +S+ E GR+ P LV +A+ L ++ Sbjct: 4 AQHIGTRIRELRKAKGLTLQQLADVFGISRASVSEWESGRSKPDANKLVLLAKELHTAVE 63 Query: 116344 YFIDTPTEARSVCRGNAMQYFQFANSASLFARL-------TNLVDGRKLDAILVRMPAGQ 116502 Y ++ G+ FA+SA+ RL ++VD ++ + P G+ Sbjct: 64 YLLN----------GDTNDAMSFADSAASRRRLRGGTKQSASIVDNS--ESNITEWPVGK 111 Query: 116503 SPSEITTHAGE 116535 P AG+ Sbjct: 112 LPLISWVQAGD 122 >ref|NP_112710.1|ORF47 Length = 918 Score = 48.5 bits (114), Expect = 3e-04 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Frame = +2 Query: 392 LNGFDDAKNKGVNIGGTAGEAVKAAADGRVVYSG-NGLRGYGNLIIIKHDATYLTAYAHN 568 + G + N + G + A+ DG+VV +G N YGN +IKH T YAH Sbjct: 803 ITGAQEFHNAMDLVNGNPTTPILASGDGQVVQAGSNYYDWYGNYTVIKHADGLYTGYAHQ 862 Query: 569 RALMVKEGDAVTKGQKIAEMG-NSDADRVMLHFEVRRQGKP 688 + V G V KGQ+I MG LHF+ Q P Sbjct: 863 SRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMDQYWP 903 >ref|NP_108727.1|minor structural protein 3 Length = 906 Score = 48.5 bits (114), Expect = 3e-04 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Frame = +2 Query: 392 LNGFDDAKNKGVNIGGTAGEAVKAAADGRVVYSG-NGLRGYGNLIIIKHDATYLTAYAHN 568 + G + N + G + A+ DG+VV +G N YGN +IKH T YAH Sbjct: 791 ITGAQEFHNAMDLVNGNPTTPILASNDGQVVQAGSNYYNWYGNYTVIKHADGLYTGYAHQ 850 Query: 569 RALMVKEGDAVTKGQKIAEMG-NSDADRVMLHFEVRRQGKP 688 + V G V KGQ+I MG LHF+ Q P Sbjct: 851 SRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMDQYWP 891 >ref|NP_076626.1|endopeptidase Length = 894 Score = 48.5 bits (114), Expect = 3e-04 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Frame = +2 Query: 392 LNGFDDAKNKGVNIGGTAGEAVKAAADGRVVYSG-NGLRGYGNLIIIKHDATYLTAYAHN 568 + G + N + G + A+ DG+VV +G N YGN +IKH T YAH Sbjct: 779 ITGAQEFHNAMDLVNGNPTTPILASGDGQVVQAGSNYYDWYGNYTVIKHADGLYTGYAHQ 838 Query: 569 RALMVKEGDAVTKGQKIAEMG-NSDADRVMLHFEVRRQGKP 688 + V G V KGQ+I MG LHF+ Q P Sbjct: 839 SRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMDQYWP 879 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 48.1 bits (113), Expect = 4e-04 Identities = 34/123 (27%), Positives = 53/123 (43%) Frame = -2 Query: 298919 TVTSTDGVKLAVQESGDPDGVPVILIHGLLGSRLNWDAQVQSPELRGFRIITYDLRGHGL 298740 T+ DG ++ V G G P++ +HGL S ++ + GFR+I D HG Sbjct: 5 TIVLADGFRVGVSTVGT--GAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGR 62 Query: 298739 SDKPSGAQPYRDGTRWGDDLAAVIDGAHARKPVVVGWSLGGVVISNYLARYGDRAIAGAV 298560 S D TR +D + + G S+GG ++ AR+ R +A AV Sbjct: 63 SGSLPTGHTVEDMTR---VTLKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHR-VAAAV 118 Query: 298559 YVD 298551 +D Sbjct: 119 LLD 121 Score = 40.0 bits (92), Expect = 0.12 Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 1/120 (0%) Frame = -2 Query: 259406 SDGLRLHYVSWGRDDAPTVVMLHGLRSYAHTWAPVADALVDR-YRVVALDQRGRGLSDWD 259230 +DG R+ + G AP +V LHGL A + + L + +RV+ALD G S Sbjct: 9 ADGFRVGVSTVGTG-AP-LVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSL 66 Query: 259229 PRRDYYAAAYVRDLDALVRALGLRRFVLVGHSMGGANAFVYAASQAERHAERLAGLVIED 259050 P + R + L + R + GHSMGG AA RH R+A V+ D Sbjct: 67 PT-GHTVEDMTRVTLKTLDELDIHRAIFAGHSMGGGMVVEIAA----RHPHRVAAAVLLD 121 >ref|NP_818239.1|gp188 Length = 318 Score = 48.1 bits (113), Expect = 4e-04 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 1/145 (0%) Frame = +1 Query: 250153 RNGILLIADEVVTGFGRTGSLLGSRGWGVAADILCVAKGISAGYVPLGATLYNGRIADAI 250332 ++G ++ADE TGFGR G + G + +G D + + G + G + LG + + D Sbjct: 134 KSGRTVVADESATGFGRLGRIWGHQAYGFTPDAI-IFGGPAGGGLTLGGVIGPAELLDDA 192 Query: 250333 EHGAGFSHVVMHGYTYSGHPLACAASLAVLDIVEAEDLPGNAARVGQRLLEQLLPLKADF 250512 G +G PLACA A L + E L + G E+L L F Sbjct: 193 FVG-----------PMAGAPLACATGAATLAAINPE-LLEHVREEGVTFGERLRALVDRF 240 Query: 250513 -ETVGDVCGKGLMLALDLVTDKASR 250584 + + D G GL LD + + +R Sbjct: 241 GDYLADTAGSGLYHTLDFRSPQLAR 265 >ref|NP_663686.1|structural protein Length = 908 Score = 47.8 bits (112), Expect = 6e-04 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Frame = +2 Query: 392 LNGFDDAKNKGVNIGGTAGEAVKAAADGRVVYSG-NGLRGYGNLIIIKHDATYLTAYAHN 568 + G + N + G + A+ DG+VV +G N YGN +IKH T YAH Sbjct: 793 ITGAQEFHNAMDLVNGNPTTPILASNDGQVVQAGSNYYDWYGNYTVIKHADGLYTGYAHQ 852 Query: 569 RALMVKEGDAVTKGQKIAEMG-NSDADRVMLHFEVRRQGKP 688 + V G V KGQ+I MG LHF+ Q P Sbjct: 853 SRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMDQYWP 893 >ref|NP_536425.1|putative helix-turn-helix transcriptional regulator Length = 128 Score = 47.8 bits (112), Expect = 6e-04 Identities = 25/59 (42%), Positives = 35/59 (59%) Frame = +1 Query: 116185 IRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTMQYFIDTP 116361 +RA R L++T D A AGISKP+LSQ+E + + L +IA AL V + I+ P Sbjct: 66 VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVPVDDLIELP 124 >ref|NP_945111.1|gp80 Length = 128 Score = 47.8 bits (112), Expect = 6e-04 Identities = 25/59 (42%), Positives = 35/59 (59%) Frame = +1 Query: 116185 IRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTMQYFIDTP 116361 +RA R L++T D A AGISKP+LSQ+E + + L +IA AL V + I+ P Sbjct: 66 VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVPVDDLIELP 124 >ref|NP_690787.1|immunity repressor Length = 144 Score = 47.4 bits (111), Expect = 8e-04 Identities = 22/66 (33%), Positives = 42/66 (63%) Frame = +1 Query: 116167 VSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTMQY 116346 +++G +I+A+R+ KLT + A A +S+ +L+ +ER R PS+++L +A ALG+ + Sbjct: 1 MTVGQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSA 60 Query: 116347 FIDTPT 116364 + T Sbjct: 61 IVGEET 66 >ref|NP_064745.1|gp7 Length = 540 Score = 46.6 bits (109), Expect = 0.001 Identities = 65/259 (25%), Positives = 93/259 (35%), Gaps = 2/259 (0%) Frame = +3 Query: 311727 EAAGPAANTPQCAGQRSDCARCRVRYRANDATEAAGPAANTPQCAGQRSDCARCRVRHRP 311906 EAA AA Q A + ++ A + AAG +A Sbjct: 74 EAAKAAALVAQAAAELAENNAETAEVNAEASETAAGLSAT-------------------- 113 Query: 311907 DDTAETASPASDATQCAGQCSDCARCRVCYRPDDTAETTSPASDATQCAGQRPDCARRCV 312086 A T++ + A++ A S TA TS + AT A Q A Sbjct: 114 --AAATSATNAGASETAASAS------------ATASATSATNSATS-ASQAATSASAAA 158 Query: 312087 CYRANDAAETTSPASDATQCAGQRPDCARCRVGYRADDATEAASRV--AATDTTQCTGYR 312260 N A T+ A+ AT +G A + + AT AA+ AAT T + Sbjct: 159 VSEGNAATSETNAANSATSASGS-ASTATTQASAASVSATNAATSASNAATSATNAAASQ 217 Query: 312261 ANHATKTTGRIANTAQCTSYCADCTACRVAHCPDNTTETTGPASNTAQCASQRSDCARGR 312440 A AT T A+ + T+ A A A+ + + T A+N A AS S A Sbjct: 218 AAAATSETNAAASESTVTT-SATNAATSEANAATSASTATTQATNAATSASTASTSATNA 276 Query: 312441 VRYRADDATETTSPASDAT 312497 + A+ +S AS AT Sbjct: 277 ATSETNAASSASSAASSAT 295 Score = 42.0 bits (97), Expect = 0.032 Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 2/156 (1%) Frame = -2 Query: 67670 ALTVPFTAVAKSASSRITDADLPPSSSATRLTPAAASSATRLPARVEPVNDTMSTSG--S 67497 A + TA A SA++ T A S +AT + AA S + N S SG S Sbjct: 128 AASASATASATSATNSATSA----SQAATSASAAAVSEGNAATSETNAANSATSASGSAS 183 Query: 67496 VASTSPTTGPYPHTRLNTPAGSPASWIASASMNALSGATSDGFSTTVQPAASAGATFNVT 67317 A+T + T T A + A+ +A+ + + ATS+ + + + AT T Sbjct: 184 TATTQASAASVSATNAATSASNAATSATNAAASQAAAATSETNAAASESTVTTSATNAAT 243 Query: 67316 WLSG*FHGVIAATTPTGSRTTSELPTCASNSNDSAS 67209 + ATT + TS S +N + S Sbjct: 244 SEANAATSASTATTQATNAATSASTASTSATNAATS 279 Score = 41.2 bits (95), Expect = 0.054 Identities = 60/236 (25%), Positives = 88/236 (37%), Gaps = 6/236 (2%) Frame = -2 Query: 304184 LANSATAIGTVAVAQGNTALAIGRQSAAVGDFSM---ALGNVADAHGTSSIALGHSALAS 304014 LA+ A VAQ LA A + A G A A TS+ G S A+ Sbjct: 70 LADVEAAKAAALVAQAAAELAENNAETAEVNAEASETAAGLSATAAATSATNAGASETAA 129 Query: 304013 GDRSVAIGGANPTSSDGVSAGASYDAATQTRAGGTQSVAIGAGAQTNDNNQVAIGSGSVG 303834 A A+ TS+ + AS A + + A ++ A A ++TN N SGS Sbjct: 130 S----ASATASATSATNSATSASQAATSASAAAVSEGNA--ATSETNAANSATSASGS-- 181 Query: 303833 ANNGGTPVFGGTAAPVGGAVSFGALGSERQLKNV---AAGAADTDAVNVQQLKNVNSTLS 303663 TA A S A + N A AA + A N ++ S Sbjct: 182 ---------ASTATTQASAASVSATNAATSASNAATSATNAAASQAAAATSETNAAASES 232 Query: 303662 TGIGNVDARVTSVGNSLSTTISNVDQRVTSVGNSLSTSIVTATKNVVKYTDDSHAA 303495 T + TS N+ +T+ S + T+ S ST+ +AT T+ + +A Sbjct: 233 TVTTSATNAATSEANA-ATSASTATTQATNAATSASTASTSATNAATSETNAASSA 287 Score = 40.0 bits (92), Expect = 0.12 Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 6/153 (3%) Frame = -2 Query: 67649 AVAKSASSRITDADLPPSSSATRL---TPAAASSATRLPARVEPVNDTMSTSGSVASTSP 67479 A A+ A + A++ +S T AAA+SAT A + + + S + A+ S Sbjct: 85 AAAELAENNAETAEVNAEASETAAGLSATAAATSATNAGASETAASASATASATSATNSA 144 Query: 67478 TTGPYPHTRLNTPA---GSPASWIASASMNALSGATSDGFSTTVQPAASAGATFNVTWLS 67308 T+ T + A G+ A+ +A+ +A S + S +TT AAS AT T S Sbjct: 145 TSASQAATSASAAAVSEGNAATSETNAANSATSASGSASTATTQASAASVSATNAATSAS 204 Query: 67307 G*FHGVIAATTPTGSRTTSELPTCASNSNDSAS 67209 A + TSE AS S + S Sbjct: 205 NAATSATNAAASQAAAATSETNAAASESTVTTS 237 Score = 40.0 bits (92), Expect = 0.12 Identities = 51/204 (25%), Positives = 80/204 (39%), Gaps = 13/204 (6%) Frame = +3 Query: 268065 APSTTNAAG*PKCCASTPPSTGLSAAPMPCAVATAPCPAFTRPEPCSSRTTSAGTTTLCR 268244 A ++ AAG A+T + ++ A ATA + T S+ + S T+ Sbjct: 101 AEASETAAGLSATAAATSATNAGASETAASASATASATSATN----SATSASQAATSASA 156 Query: 268245 PAPMPSSTCTGHTPASLIHAAATTPRTGSTRYENSSTRQ*PCERIRRGASHAAATITNCA 268424 A + T T A+ ++A + + ST +S AS+AA + TN A Sbjct: 157 AAVSEGNAATSETNAA--NSATSASGSASTATTQASAASVSATNAATSASNAATSATNAA 214 Query: 268425 MTMVCA----VNALGLLRCVTTTPIP*SGSIAALPR*NSASDAPSST---------SGRF 268565 + A NA VTT S + AA N+A+ A ++T + Sbjct: 215 ASQAAAATSETNAAASESTVTT-----SATNAATSEANAATSASTATTQATNAATSASTA 269 Query: 268566 SASVRRPLTRDVGAAPTASGCAAS 268637 S S T + AA +AS A+S Sbjct: 270 STSATNAATSETNAASSASSAASS 293 >ref|NP_040602.1|Tail fiber protein Length = 401 Score = 46.6 bits (109), Expect = 0.001 Identities = 69/302 (22%), Positives = 119/302 (39%), Gaps = 7/302 (2%) Frame = +3 Query: 311613 VRYRADDAAGPASDATQCAGQRSDCARCRVCYRANDATEA-------AGPAANTPQCAGQ 311771 V A A +DA + AG S A +V DAT++ AG AA++ Q A Sbjct: 113 VARNASVVAQSTADAKKSAGDASASA-AQVAALVTDATDSARAASTSAGQAASSAQEASS 171 Query: 311772 RSDCARCRVRYRANDATEAAGPAANTPQCAGQRSDCARCRVRHRPDDTAETASPASDATQ 311951 ++ A +A +A ++A A ++ A + A+ + A+ AS A Sbjct: 172 GAEAASA----KATEAEKSAAAAESSKNAAATSAGAAKTSETNAAASQQSAATSASTAAT 227 Query: 311952 CAGQCSDCARCRVCYRPDDTAETTSPASDATQCAGQRPDCARRCVCYRANDAAETTSPAS 312131 A + + AR V + + T+ +S A + A + AAE ++ A+ Sbjct: 228 KASEAATSARDAVASKEAAKSSETNASSSAGRAAS-------------SATAAENSARAA 274 Query: 312132 DATQCAGQRPDCARCRVGYRADDATEAASRVAATDTTQCTGYRANHATKTTGRIANTAQC 312311 ++ + + A R A DA AA+ A+T +T+ AT+ G + +Q Sbjct: 275 KTSETNARSSETAAERSASAAADAKTAAAGSASTASTK--------ATEAAGSAVSASQS 326 Query: 312312 TSYCADCTACRVAHCPDNTTETTGPASNTAQCASQRSDCARGRVRYRADDATETTSPASD 312491 S A+ A R + + + A + +D R + + AT +TS Sbjct: 327 KS-AAEAAAIRAKNSAKRAEDI------ASAVALEDADTTRKGI-VQLSSATNSTSETLA 378 Query: 312492 AT 312497 AT Sbjct: 379 AT 380 >ref|NP_777327.1|hypothetical protein Length = 196 Score = 45.4 bits (106), Expect = 0.003 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 8/91 (8%) Frame = +2 Query: 422 GVNIGGTAG------EAVKAAADGRVVYSGNGLRGYGNLIIIKH-DATYLTAYAHNRALM 580 GV++ G G + V A DGRVV +G +G ++++ H A T Y H R ++ Sbjct: 52 GVDLNGPGGGDTDCGQPVHAMTDGRVVIAGR-FPVWGGMVVLWHPSAGVWTRYGHLRDIL 110 Query: 581 VKEGDAVTKGQKIAEMGN-SDADRVMLHFEV 670 V GD V GQ+I +G + LHF+V Sbjct: 111 VHPGDVVVAGQQIGTIGKMTTGGYCHLHFDV 141 >ref|NP_958209.1|gene 33 protein Length = 322 Score = 42.4 bits (98), Expect = 0.024 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 5/175 (2%) Frame = +1 Query: 190651 RQPRLRDDDQPVAQDHAPDQALVGV-----RVHADHEVVPFLDHVDRPVFRRHLQPDVRV 190815 RQP L D ++ A+ A ++A ++ +DHE+ +D R R+ + ++ Sbjct: 103 RQP-LTDYEEEQARIKAEEEAKAAAEALAKQIESDHEIAILMD---REFDRQREEARLKA 158 Query: 190816 SQRERRHQPPHRELGKQHRRADTQPAARPLAPRCNRRRAVGQFREQRARALVERAPFLRE 190995 Q +R H+ + ++ RA+ + A+ RR A + +RA ER E Sbjct: 159 EQEKREHEERLKREAEEKARAEAEAKAKAEIEAAARREAEAKAAAERA----ERERIEAE 214 Query: 190996 LHAARSALEQAQRQTVLQFRDAARQRRLRASRDPRGFPEAAMAGDEIEIGESEQV 191160 A R A E A+R + + A R +A + A A ++ I E +++ Sbjct: 215 QRAQREAKEAAER-AEREKQAAIEAERRKAQEEAERIRREAEAKEQARIAEEKRI 268 >ref|NP_695118.1|putative tail protein Length = 1517 Score = 41.6 bits (96), Expect = 0.041 Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 10/225 (4%) Frame = -2 Query: 304169 TAIGTVA--VAQG------NTALAIGRQSAAVGDFSMALGNVADAHGTSSIALGHSALAS 304014 TAI T A + QG A I AA+G + +V + GTS I+ + + Sbjct: 853 TAISTAAQGIGQGIQSALEGVASIISATGAAIGAALQGIASVVQSVGTS-ISTAAKGIGN 911 Query: 304013 GDRSVAIGGANPTSSDGVSAGASYDAATQTRAGGTQSVAIGAGAQTNDNNQVAIGSGSVG 303834 G +S G SS S G + + + A S+ A NQ+A G + Sbjct: 912 GIKSAFEG----ISSVITSVGNAISSVLNSLANVFNSIGTAAQKAGVGFNQLANGVVKIT 967 Query: 303833 ANNGGTPVFGGTAAPVGGAVSFGALGSERQLKNVAAGAADTDAVNVQQLKNVNSTLSTGI 303654 N G AA + AV+ G +GS + + +AG A A Q ++ ++ Sbjct: 968 NTN-----LGDMAASLA-AVAHG-VGS---ISDSSAGLAQAGAGMAQLGNGMSKVSASAT 1017 Query: 303653 GNVD--ARVTSVGNSLSTTISNVDQRVTSVGNSLSTSIVTATKNV 303525 G V +R TSV S+ + +++ +TS G S ST + A +++ Sbjct: 1018 GAVAGLSRFTSVTTSIQSAFTSLQSLLTSAGTSFSTFSIQAMQSL 1062 >ref|NP_056689.1|putative minor tail protein Length = 1510 Score = 40.8 bits (94), Expect = 0.070 Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 13/223 (5%) Frame = -2 Query: 303917 GGTQSVAIGAGAQTNDNNQVAIGSGSVGANNGGTPVFGGTAAPVGGAVSFGALGSERQLK 303738 GG S A+ A +AI + ++G + G A+ + S A+GS L+ Sbjct: 827 GGVISAALSGIASIVSAAGMAIATAAMGIGTAISTALSGVASIISATGS--AIGSA--LQ 882 Query: 303737 NVAAGAADTDAVNVQQLKNVNSTLSTGIGNVDARVTSVGNSLSTTISNVDQRVTSVG--- 303567 +A+ A + + + + + + + +TS GN++S+ ++++ S+G Sbjct: 883 GIASVVQSVGASISTAAQGIGNGIKSAFEGISSVITSAGNAISSVLNSLANVFNSIGTAA 942 Query: 303566 -------NSLSTSIVTATKNVVKYTDDSHAAIAL---XXXXXXXXXXXXXXXXXXXXXXX 303417 N L+T +V T + S AA+A Sbjct: 943 QKAGAGFNQLATGVVKITNTNLGDMAASLAAVAHGIGSISDSSAGLAQAGAGMAQLGNGM 1002 Query: 303416 GQLKGSLTPLQTSISTAASNITNLQNSVTGINGSLSTAASNIA 303288 ++ S T + ++ +S IT++Q++ T + L+TA ++ + Sbjct: 1003 SKVSASATSAVSGLTLFSSTITSIQSAFTNLQSLLTTAGTSFS 1045 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 40.8 bits (94), Expect = 0.070 Identities = 26/58 (44%), Positives = 29/58 (50%) Frame = +3 Query: 281163 RAAVRARPGDNGTAPARRAPRHPDDTRPFRPDTAPHRAAVQREQGLRPRDHQRHRPVP 281336 R VRARPG RR P HP+ R RP R +R LRPR H+RHR P Sbjct: 192 RVRVRARPGPGAARRPRRRP-HPEHPRAVRPRRRTGRRH-RRRASLRPR-HRRHRSTP 246 >ref|YP_006616.1|Gp36 Length = 202 Score = 40.8 bits (94), Expect = 0.070 Identities = 20/59 (33%), Positives = 35/59 (59%) Frame = +1 Query: 116176 GNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTMQYFI 116352 G +++A R LK+TL + A GIS P + +ERG PS+ + +A+ L + +Q+ + Sbjct: 9 GERLKARRLELKMTLKQVAESVGISLPGVQNLERGDVMPSLEIGLALAKCLRMPVQWIL 67 >ref|NP_046933.1|gp38 Length = 202 Score = 40.8 bits (94), Expect = 0.070 Identities = 21/59 (35%), Positives = 34/59 (57%) Frame = +1 Query: 116176 GNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTMQYFI 116352 G +++A R LKLTL + A GIS P + +ERG PS+ + +A+ L +Q+ + Sbjct: 9 GERLKARRLELKLTLKQVAEAVGISLPGVQNLERGDVMPSLEIGLSLAKCLRKPVQWIL 67 >ref|NP_859265.1|hypothetical protein Length = 645 Score = 40.4 bits (93), Expect = 0.092 Identities = 23/87 (26%), Positives = 41/87 (47%) Frame = +3 Query: 229584 LISEVRTASGNVATGAGEIASGNQDLSSRTEQQAASLQETASSMEQLTSTVRLNADNAQQ 229763 L+++ R NVA I N+D +++ Q S + A+S + + + + A + Sbjct: 102 LLTDFRQIQNNVADDLATIRRLNEDTATKNTQATQSKESAAASAKSASDSAKTATSRAAE 161 Query: 229764 ASGLANNASEVAQRGSTAVGLMVDTMT 229844 A A +A+E A R TA G ++ T Sbjct: 162 AGQKATDATEAATRAVTAAGNAEESST 188 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 40.4 bits (93), Expect = 0.092 Identities = 23/87 (26%), Positives = 41/87 (47%) Frame = +3 Query: 229584 LISEVRTASGNVATGAGEIASGNQDLSSRTEQQAASLQETASSMEQLTSTVRLNADNAQQ 229763 L+++ R NVA I N+D +++ Q S + A+S + + + + A + Sbjct: 102 LLTDFRQIQNNVADDLATIRRLNEDTATKNTQATQSKESAAASAKSASDSAKTATSRAAE 161 Query: 229764 ASGLANNASEVAQRGSTAVGLMVDTMT 229844 A A +A+E A R TA G ++ T Sbjct: 162 AGQKATDATEAATRAVTAAGNAEESST 188 >ref|NP_859099.1|hypothetical protein Length = 645 Score = 40.4 bits (93), Expect = 0.092 Identities = 23/87 (26%), Positives = 41/87 (47%) Frame = +3 Query: 229584 LISEVRTASGNVATGAGEIASGNQDLSSRTEQQAASLQETASSMEQLTSTVRLNADNAQQ 229763 L+++ R NVA I N+D +++ Q S + A+S + + + + A + Sbjct: 102 LLTDFRQIQNNVADDLATIRRLNEDTATKNTQATQSKESAAASAKSASDSAKTATSRAAE 161 Query: 229764 ASGLANNASEVAQRGSTAVGLMVDTMT 229844 A A +A+E A R TA G ++ T Sbjct: 162 AGQKATDATEAATRAVTAAGNAEESST 188 >ref|NP_817697.1|gp19 Length = 750 Score = 40.4 bits (93), Expect = 0.092 Identities = 47/162 (29%), Positives = 66/162 (40%), Gaps = 2/162 (1%) Frame = -2 Query: 304184 LANSATAIGTVAVAQGNTALAIGRQSAAVGDFSMALGNVADAHGTSSIALGHSALASGDR 304005 LA S IG A++ G LA + GD G A +S S +G+ Sbjct: 592 LAQSVPGIG--AISNGVGFLASASKPGRGGD-----GGSAFMSRANSTTYTSSPGKAGEG 644 Query: 304004 SVAIGGANPTSSDGVSAGASYDA--ATQTRAGGTQSVAIGAGAQTNDNNQVAIGSGSVGA 303831 S G P +++G + GA A A + +AGG G G N + + G+G G Sbjct: 645 SALAAGGAPGAANGGTGGAGATAPMAGERKAGGGGGAG-GGGRAGNQSGTITGGTGGNG- 702 Query: 303830 NNGGTPVFGGTAAPVGGAVSFGALGSERQLKNVAAGAADTDA 303705 G P GG + G A++ G +G NVA G T A Sbjct: 703 ---GFP--GGASGGGGAAINIGTIGF-----NVAPGPPGTPA 734 >ref|NP_037684.1|gp24 Length = 1183 Score = 40.4 bits (93), Expect = 0.092 Identities = 63/315 (20%), Positives = 119/315 (37%), Gaps = 28/315 (8%) Frame = -2 Query: 302429 NYKIGGSA--FNNVGDALTNLDGRVGSNTTTLANHETRIDNAETNIAGNTAAIAGLQQDA 302256 N KI G A D L + N + +T ++ + + +++++ L+Q Sbjct: 845 NEKIAGMADDIKQANDELELQAQEIAKNAQDIGQVQTSVNELSSTVGDVSSSLSDLEQTV 904 Query: 302255 LQFDPTLG--------AFNAARGSAPTKLTNVADGNVAAGSTDAVNGGQLSGVKTTLEQQ 302100 D LG + + G + +A +T ++G L++ Sbjct: 905 ATADTALGQRIDSISVSMDGMTGGVKNSAIAIIQNGLAQVATRKSLSASVAGNSAQLDRI 964 Query: 302099 ITNVSNQAGEAVKNVVKYDVDASGNR--LNSVSLVGGD---ATSAVVLKNVAAGTSDTDA 301935 + N+ ++++ D +GN+ +NS++ D AT+ + A +T A Sbjct: 965 DEVIVNEKEATARSLLSLQTDVNGNKASINSLNQTFSDYQQATATQINGITATVNGNTSA 1024 Query: 301934 V--NVKQLKDVQSNLNQLGALAVQYDDSSKSTITLGGAGGTRITNVQAGTLS-------- 301785 + N + + +V +L+ + + V + + G G + N +G S Sbjct: 1025 ITTNAQAIANVNGDLSAMYNIKVGVSSNGQYYAAGMGIG---VENTPSGMQSQVIFLADR 1081 Query: 301784 -ATSTDAVNGSQLYATNQQVSKNTTDISNLQGSVTNIANGKAGLVQQQDPNGAITVG--K 301614 A +T A N L Q + S +Q I+N K G Q + A + G Sbjct: 1082 FAVTTAAGNSVALPFVIQN-GQTFIRASFIQDGT--ISNAKIGNFIQSNNYVAGSAGWKL 1138 Query: 301613 DSGGTSVNFSGTAGD 301569 D GGT N+ TAG+ Sbjct: 1139 DKGGTFENYGSTAGE 1153 >ref|NP_050557.1|hypothetical protein Length = 645 Score = 40.4 bits (93), Expect = 0.092 Identities = 23/87 (26%), Positives = 41/87 (47%) Frame = +3 Query: 229584 LISEVRTASGNVATGAGEIASGNQDLSSRTEQQAASLQETASSMEQLTSTVRLNADNAQQ 229763 L+++ R NVA I N+D +++ Q S + A+S + + + + A + Sbjct: 102 LLTDFRQIQNNVADDLATIRRLNEDTATKNTQATQSKESAAASAKSASDSAKTATSRAAE 161 Query: 229764 ASGLANNASEVAQRGSTAVGLMVDTMT 229844 A A +A+E A R TA G ++ T Sbjct: 162 AGQKATDATEAATRAVTAAGNAEESST 188 >ref|NP_049519.1|putative tail fiber protein Length = 645 Score = 40.4 bits (93), Expect = 0.092 Identities = 23/87 (26%), Positives = 41/87 (47%) Frame = +3 Query: 229584 LISEVRTASGNVATGAGEIASGNQDLSSRTEQQAASLQETASSMEQLTSTVRLNADNAQQ 229763 L+++ R NVA I N+D +++ Q S + A+S + + + + A + Sbjct: 102 LLTDFRQIQNNVADDLATIRRLNEDTATKNTQATQSKESAAASAKSASDSAKTATSRAAE 161 Query: 229764 ASGLANNASEVAQRGSTAVGLMVDTMT 229844 A A +A+E A R TA G ++ T Sbjct: 162 AGQKATDATEAATRAVTAAGNAEESST 188 >ref|NP_818167.1|gp94 Length = 1277 Score = 40.0 bits (92), Expect = 0.12 Identities = 90/393 (22%), Positives = 130/393 (33%), Gaps = 6/393 (1%) Frame = -2 Query: 302813 DALQWNPGLGAYDASHGGHGPQLISNVAAGKSGTDAVNVDQLNAAIHDGTSQLDALAVKY 302634 D+ Q PG G +D + + +S +GT A G S DA + Sbjct: 703 DSTQAKPGGGGFDPNMNDRSNRPVSEGGGATNGTPA------------GWSAADAAS--- 747 Query: 302633 DDASKQQVSLGAGNGGNPVRVTXXXXXXXXXGSTDAVNGAQLRRXXXXXXXXXXXXXXAN 302454 S AG+ NP +T A GA + Sbjct: 748 -PGSNNGPHGAAGSATNPT-------PGQPGNNTPAAPGAAPKNNLAGPAGTNTPSATPP 799 Query: 302453 PDGSIGAPNYKIGGSAFNNVGDALTNLDGRV--GSNTTTLANHETRIDNAETNIAGNTAA 302280 G IG Y+I GD L+++ R G + +LA + I + + AG+T Sbjct: 800 GGGQIGQGEYQI------QSGDTLSDIAQRAGYGGDYNSLA-QQNNIADPDKIFAGDTIN 852 Query: 302279 IAGLQQDALQFDPTLGAFNAARGSAPTKLTNVADGNVAAGSTDAVNGGQLSGVKTTLEQ- 302103 I A D L A G+ + G +G+TDA G +G T + Sbjct: 853 IGTPGGGATTPDVDLSAATPGGGADANNTASDFAGTSTSGATDAT--GTDNGTSTPADNA 910 Query: 302102 --QITNVSNQAGEAVKNVVKYDVDASGNRLNSVSLVGGDATSAV-VLKNVAAGTSDTDAV 301932 Q T +N+ G + SG+ D+ V + N AA T T A Sbjct: 911 AAQTTTETNKTGRRRRQAA-----PSGSSATPAPSTTPDSEGLVDSMDNPAAPTGGTPAS 965 Query: 301931 NVKQLKDVQSNLNQLGALAVQYDDSSKSTITLGGAGGTRITNVQAGTLSATSTDAVNGSQ 301752 N + S N LG D S + T GGT T + T G Sbjct: 966 NTA----LSSPNNDLG-------DPSSAIDTGASTGGT-----PDATGAGTDASTPGGFD 1009 Query: 301751 LYATNQQVSKNTTDISNLQGSVTNIANGKAGLV 301653 L N +S +S G ++IA G +V Sbjct: 1010 LSQFNDTISGIGDAVSTGVGIASDIAGGVGDVV 1042 >ref|NP_075512.2|hypothetical protein Length = 2067 Score = 39.3 bits (90), Expect = 0.20 Identities = 55/279 (19%), Positives = 104/279 (37%), Gaps = 10/279 (3%) Frame = -2 Query: 302411 SAFNNVGDALTNLDGRVGSNTTTLANHETRIDNAETNIAGNTAAIAGLQQDALQFDPTLG 302232 S++ L + T+ NH + AET + AA+ L++ + + Sbjct: 217 SSYAKTNTKLKQTEKEFNDLNNTIKNHSANVAKAETAVNKEKAALNNLERSIDKASSEMK 276 Query: 302231 AFNAARGSAPTKLTNVADGNVAAGSTDAVNGGQLSGVKTTLEQQI-TNVSNQAGEAVKNV 302055 FN + A + +A + G +++ + T+ + T ++ G A+K Sbjct: 277 TFNKEQMIAQSHFGKLASQADVMSKKFSSIGDKMTSLGRTMTMGVSTPITLGLGAALKTS 336 Query: 302054 VKYDVDASGNRLNSVSLVGGDA-TSAVVLKNVAAGTSDTDAVNVKQLKDVQSNLNQLGAL 301878 ++ +S VG A S+ LK+++ D A K +V + +L AL Sbjct: 337 ADFE--------GQMSRVGAIAQASSKDLKSMSNQAVDLGAKTSKSANEVAKGMEELAAL 388 Query: 301877 ---AVQYDDSSKSTITLGGAGGTRITNVQAGTLSATSTDAVNGSQLYATNQQVSKNTTDI 301707 A Q ++ I+ A G + SA ++ + S ++++ D Sbjct: 389 GFNAKQTMEAMPGVISAAEASGAEMATTATVMASAINSFGLKASDANHVADLLARSANDS 448 Query: 301706 S---NLQGSVTNIAN--GKAGLVQQQDPNGAITVGKDSG 301605 + G A KA V +D + AI V +SG Sbjct: 449 AADIQYMGDALKYAGTPAKALGVSIEDTSAAIEVLSNSG 487 >ref|NP_803346.1|tail fiber protein Length = 2066 Score = 39.3 bits (90), Expect = 0.20 Identities = 55/279 (19%), Positives = 104/279 (37%), Gaps = 10/279 (3%) Frame = -2 Query: 302411 SAFNNVGDALTNLDGRVGSNTTTLANHETRIDNAETNIAGNTAAIAGLQQDALQFDPTLG 302232 S++ L + T+ NH + AET + AA+ L++ + + Sbjct: 217 SSYAKTNTKLKQTEKEFNDLNNTIKNHSANVAKAETAVNKEKAALNNLERSIDKASSEMK 276 Query: 302231 AFNAARGSAPTKLTNVADGNVAAGSTDAVNGGQLSGVKTTLEQQI-TNVSNQAGEAVKNV 302055 FN + A + +A + G +++ + T+ + T ++ G A+K Sbjct: 277 TFNKEQMIAQSHFGKLASQADVMSKKFSSIGDKMTSLGRTMTMGVSTPITLGLGAALKTS 336 Query: 302054 VKYDVDASGNRLNSVSLVGGDA-TSAVVLKNVAAGTSDTDAVNVKQLKDVQSNLNQLGAL 301878 ++ +S VG A S+ LK+++ D A K +V + +L AL Sbjct: 337 ADFE--------GQMSRVGAIAQASSKDLKSMSNQAVDLGAKTSKSANEVAKGMEELAAL 388 Query: 301877 ---AVQYDDSSKSTITLGGAGGTRITNVQAGTLSATSTDAVNGSQLYATNQQVSKNTTDI 301707 A Q ++ I+ A G + SA ++ + S ++++ D Sbjct: 389 GFNAKQTMEAMPGVISAAEASGAEMATTATVMASAINSFGLKASDANHVADLLARSANDS 448 Query: 301706 S---NLQGSVTNIAN--GKAGLVQQQDPNGAITVGKDSG 301605 + G A KA V +D + AI V +SG Sbjct: 449 AADIQYMGDALKYAGTPAKALGVSIEDTSAAIEVLSNSG 487 >ref|YP_006905.1|Hypothetical protein Length = 321 Score = 39.3 bits (90), Expect = 0.20 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 16/127 (12%) Frame = -2 Query: 303851 GSGSVGANNGGTPVFGGTAAPVGGAV--------SFGALGSERQLKNVAAGAADTDAVNV 303696 G G+ AN G FGG + GA+ FG GS + VAA DA+ Sbjct: 72 GMGAFPANAGA---FGGEGMGLFGAILIGALLTGGFGGFGSFGRGAGVAAEGTAVDAILS 128 Query: 303695 QQ-----LKNVNST---LSTGIGNVDARVTSVGNSLSTTISNVDQRVTSVGNSLSTSIVT 303540 Q L +N+T + G G V + V VG + + + V + G +LS I Sbjct: 129 NQDTASILAAINTTRTEANQGTGAVLSAVNGVGAAQAASTQQVLTTIYGTGANLSNQICA 188 Query: 303539 ATKNVVK 303519 T+NV++ Sbjct: 189 ETRNVIQ 195 >ref|YP_077230.1|Hypothetical protein Length = 757 Score = 38.9 bits (89), Expect = 0.27 Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 14/187 (7%) Frame = -2 Query: 304055 GTSSIALGHSALASGDRSVAIGGANPTSSDGVSAGASYDAATQTRAGGTQSVAIGAGAQT 303876 G+S+ + S+ SG G +NP S G G GG+ S G Sbjct: 172 GSSNNSPNSSSPGSGGGG---GSSNPNSGGGSGGG-----------GGSSSPPNSGGGGG 217 Query: 303875 NDNNQVAIGSGSVGANNG----------GTPVFGGTAAPVGGAVSFGALGSERQLKNVAA 303726 N+N GSG G + G + + GA+S AL S QL N + Sbjct: 218 NNNPNSGGGSGGGGGSTGPNTQQVQNYISQAENDLQSGNISGALS--ALQSGGQLANQIS 275 Query: 303725 --GAADTDAVNVQQLKNVNSTLSTGIGNV--DARVTSVGNSLSTTISNVDQRVTSVGNSL 303558 AA T + VQ L N+ LS+ + +A +S S TI N + ++ NS+ Sbjct: 276 YTQAASTISQAVQILNNIQQQLSSVASTIQQEANKSSYTQSDLQTIQNAISTLNNINNSI 335 Query: 303557 STSIVTA 303537 + +T+ Sbjct: 336 GNNTITS 342 >ref|NP_817477.1|gp27 Length = 946 Score = 38.9 bits (89), Expect = 0.27 Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 5/109 (4%) Frame = -2 Query: 304034 GHSALASGD-RSVAIGGANPTSSDGV----SAGASYDAATQTRAGGTQSVAIGAGAQTND 303870 G L SGD R A GGA+ SS V + G T + + GT+ + A A Sbjct: 792 GAKVLTSGDGRGGANGGASVFSSGSVVITANGGGHGSGGTNSSSSGTRGLGGTATAVGIT 851 Query: 303869 NNQVAIGSGSVGANNGGTPVFGGTAAPVGGAVSFGALGSERQLKNVAAG 303723 ++ SG+ G N G +P GG+ GA G G + K G Sbjct: 852 GVTASLLSGANGGNGGSSPTSGGSKTDGAGAGGRGGGGKKSNDKTFNGG 900 >ref|NP_700411.1|regulatory protein Length = 231 Score = 38.1 bits (87), Expect = 0.46 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Frame = +1 Query: 116167 VSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATP-SITSLVRIAQALGVTMQ 116343 +++GN++R LR+ + + E A G+ +S++E G+ + +L R+A LGV + Sbjct: 1 MNIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIA 60 Query: 116344 YFIDTPTEARSVCRGNAMQYFQFANSASLF 116433 + + +VC+ + M+ AN LF Sbjct: 61 ELFTSDPKGNTVCKHSDMRK-DSANVKDLF 89 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,175,525,240 Number of Sequences: 14420 Number of extensions: 22557693 Number of successful extensions: 88747 Number of sequences better than 0.5: 43 Number of HSP's better than 0.5 without gapping: 12150 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 88527 length of database: 3,019,461 effective HSP length: 128 effective length of database: 1,173,701 effective search space used: 122745650580 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig281 (289,093 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_758903.1|ORF10 158 3e-37 ref|NP_945090.1|gp59 157 4e-37 ref|YP_164278.1|RdgC exonuclease 136 9e-31 ref|YP_006536.1|HrdC 130 6e-29 ref|NP_817947.1|gp96 89 3e-16 ref|NP_076827.1|Csp 84 5e-15 ref|NP_945089.1|gp58 65 4e-09 ref|YP_164695.1|transposase 64 5e-09 ref|NP_046572.1|ABC transporter 64 9e-09 ref|YP_024488.1|putative glycerophosphoryl diester phosphodieste... 61 5e-08 ref|NP_061549.1|Orf53 47 0.001 ref|NP_818239.1|gp188 43 0.013 ref|NP_061524.1|Orf28 41 0.065 ref|YP_024716.1|gp43 41 0.065 ref|NP_958267.1|hypothetical protein 40 0.11 ref|YP_006628.1|Gp48 40 0.11 ref|NP_046877.1|putative non-heme haloperoxidase 39 0.32 ref|NP_046829.1|gp14 39 0.32 ref|NP_932394.1|DNA polymerase accessory protein 39 0.32 ref|NP_891600.1|Gp44 38 0.42 ref|NP_046944.1|gp48 38 0.42 ref|NP_203466.1|hypothetical protein 38 0.42 >ref|NP_758903.1|ORF10 Length = 309 Score = 158 bits (399), Expect = 3e-37 Identities = 94/299 (31%), Positives = 157/299 (52%), Gaps = 7/299 (2%) Frame = -1 Query: 83668 MWFKNLQLHRLPAPWAVTPDQMEKWLAPHAFQPGSSVEMQRAGWASPRDDGALVYSN--N 83495 MWFKN +R + +Q+EK L + F+ S ++ GW+ + A ++S+ N Sbjct: 1 MWFKNAIFYRFDKAKELDFEQLEKALQEYQFKEAGSQQVSSFGWSKVLGESAELFSHVAN 60 Query: 83494 RQMLLLFRAEKKLLPASVVNQVTKARALEVEEQQGFKVGRKQLRELKEQVTDELLPRAFS 83315 +++ + ++K+LPA V+ + KAR EV ++ KVG+K+ LK+QV ELLP+AFS Sbjct: 61 GCVMICAQRQEKILPADVIRRAHKARIDEVISREARKVGKKEREHLKDQVIQELLPKAFS 120 Query: 83314 IRRDTRVWIDTANGWLVIDAAAQALADDVRSLLVKSIDPLPLAGVHVARSPVAAMTDWLL 83135 + +IDT G V+DA+A A+D+ +LL KS+ LP+ H P MT+WL Sbjct: 121 RYSKSFAYIDTKRGLFVVDASAFKKAEDLGALLRKSLGSLPIVPTHTKNMPTDVMTNWLR 180 Query: 83134 S-GEAPGGFTVDQDAELRSSGEGGATVRYVGHALEANDMRRHIEAGKQCMRLAMTWNDRI 82958 S + P G + ELR + G VR + +++ H+ GK R+A+ W D++ Sbjct: 181 SLDKLPAGIVLGDAVELRDPVQDGGIVRLTRQEITEDEVTTHLNVGKVATRIAINWEDQV 240 Query: 82957 SFVLTPSLTIKRVTPLDVIKEAADPTAQNDDE----RFDSDFTLMTGELARMLTSLVDI 82793 + VL + + + D + E A Q D E +FD+DF +M +A++ + + Sbjct: 241 NMVLHEDVRLTGIKFDDRLVERA--MDQGDGESAAAQFDADFVIMAETMAQLYVRITGL 297 >ref|NP_945090.1|gp59 Length = 429 Score = 157 bits (398), Expect = 4e-37 Identities = 108/408 (26%), Positives = 191/408 (46%), Gaps = 7/408 (1%) Frame = +1 Query: 118009 IGSFVGAVVDWYDFLLYGIVAALVFNSEFFPKVSPTMGTLAAFATFGVGFLFRPLGGIVF 118188 I VG +W+DF+ Y + ++ FFP + L + +T GVGF RP+GGIV Sbjct: 24 IAVIVGNGFEWFDFISYSFFSVIIAKL-FFPSTDDNLSLLLSVSTIGVGFFMRPIGGIVI 82 Query: 118189 GHYGDRLGRKRMLVLTVMLMGLSTVAIGLLPAFSTIGWWAPVLLVLMRAIQGFAVGGEWG 118368 G D++GR+ L +T+ LM T IG P + G AP+++V+ R +QGF+ GGE G Sbjct: 83 GGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGGEMG 142 Query: 118369 GAALMAVESAPKQKKAFXXXXXXXXXXXXXXXATGIVSILSHTLGEAAFKSWGWRLPFVF 118548 GA E P ++ + A+ + + L E +SWGWR+PF+ Sbjct: 143 GATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWRIPFLL 202 Query: 118549 SIVLVLIGLWVRKNMDESQEFVEKVEHGNRKLRLPVLEALTRHPKAFLLIVALRLAELFT 118728 + L +G+++R +++ F G PV+E + + L+ L + Sbjct: 203 GLGLGPVGIYIRSRLND-PGFPADERLGE---CAPVVEVVRSFSREALVGFGLVVFWTVC 258 Query: 118729 MYIVTAFALSYSTTNLGMSRDLFLNIGLLVGA-VSCVTIPCFAWLADRYGLRRIYLIGA- 118902 Y++ + +Y++ L + I +LVGA + P L+D +G RR +L GA Sbjct: 259 SYVLLFYIPTYASKVLKLPSSTGF-IAVLVGASIVLFVTPLIGHLSDLFG-RRWFLAGAL 316 Query: 118903 LIGLASAVPFFVALEARS-----IAWIVIFSILLANAAHDMVVSVQQPLFTELFGAEYRY 119067 L+ + +A P F L A + + V+F +++A+ ++ ++ +++F Sbjct: 317 LVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAAL-----SDMFPDGVLS 371 Query: 119068 SGAGVGYQFASVVGGGFTPFIAVGLVSVAGGSWHLVAGYLAVGCLISL 119211 +G + Y A + GGF+ I ++ + A Y+ ++SL Sbjct: 372 TGISISYNLAVITFGGFSAAIITWAIATTHNNL-APAFYVIAAAIVSL 418 >ref|YP_164278.1|RdgC exonuclease Length = 307 Score = 136 bits (343), Expect = 9e-31 Identities = 89/253 (35%), Positives = 139/253 (54%), Gaps = 7/253 (2%) Frame = -1 Query: 83572 PGSSVEMQRAGWASP--RDDGALVYSNNRQMLLLFRAEKKLLPASVVNQVTKARALEVEE 83399 P +S E+ G+A P + D LV N L+ R E+K+LP SVVN+ K + E+EE Sbjct: 32 PCASQELTTYGFAPPVGKGDAPLVREANGFWLICCRKEEKILPGSVVNEALKEKVEEIEE 91 Query: 83398 QQGFKVGRKQLRELKEQVTDELLPRAFSIRRDTRVWIDTANGWLVIDAAAQALADDVRSL 83219 Q KV +K+ +LK+++ LLPRAF+ R+ T I A G +++D A A+D+ S Sbjct: 92 TQQRKVYKKERDQLKDEIVQTLLPRAFTRRKRTFAAIMPAQGLVIVDTATAKAAEDLLST 151 Query: 83218 LVKSIDPLPLAGVHVARSPVAAMTDWLLSGE--APGGFTVDQDAELRSSGEGGATVRYVG 83045 L +++ LP+ + SP A MT+WL S E A G F + A LR + E G ++ Sbjct: 152 LREALGSLPVRPIATKVSPTATMTEWLRSQETNAGGDFWLCDGALLRDTDEQG-SITAKH 210 Query: 83044 HALEANDMRRHIEAGKQCMRLAMTWNDRISFVLTPSLTIKRVTPLDVIKEAADPTAQNDD 82865 L ++ +R+H+++GK +LA+ W + FVL L I+ + D+++E A A D Sbjct: 211 QDLTSDVIRQHLDSGKSVTKLALAWKKDLYFVLDEGLVIRSLRFDDLLQERALDDAGKDS 270 Query: 82864 ERF---DSDFTLM 82835 + F D+ F LM Sbjct: 271 DEFAQADASFVLM 283 >ref|YP_006536.1|HrdC Length = 301 Score = 130 bits (327), Expect = 6e-29 Identities = 85/292 (29%), Positives = 160/292 (54%), Gaps = 3/292 (1%) Frame = -1 Query: 83662 FKNLQLHRLPAPWAVTPDQMEKWLAPHAFQPGSSVEMQRAGWASPRDDGALVYSNNRQML 83483 +KN+ +++L +T + +K + F P S +M + G+ SP D + V + + Sbjct: 5 WKNITIYKLSREADLTDLEDKKKMI--LFTPCGSQDMAKFGFVSPFGDNSEVIAMHGNGF 62 Query: 83482 LLFRA--EKKLLPASVVNQVTKARALEVEEQQGFKVGRKQLRELKEQVTDELLPRAFSIR 83309 +L A E K+LP V+ + + + ++E++Q K+ + + LK++V LLPRAFS Sbjct: 63 ILVEAKRETKILPPPVIQRAIQEKIEKLEQEQARKLKKTEKDSLKDEVLHSLLPRAFSKF 122 Query: 83308 RDTRVWIDTANGWLVIDAAAQALADDVRSLLVKSIDPLPLAGVHVARSPVAAMTDWLLSG 83129 + D + + I+A+A+ A+D+ +L+ KS+ LP+ + V +TDW+ G Sbjct: 123 SVIQAIYDGSTKRIYINASARQ-AEDMLALMRKSLGSLPVVPLSVENPIELTLTDWVRDG 181 Query: 83128 EAPGGFTVDQDAELRSSGEGGATVRYVGHALEANDMRRHIEAGKQCMRLAMTWNDRISFV 82949 AP GF + AEL++ E G R L ++++ H+EAGK +LA+ W RI F Sbjct: 182 SAPQGFQMGDAAELKAVLEDGGIARVKKQDLGSDEISTHLEAGKLVTKLALDWQKRIKFT 241 Query: 82948 LTPSLTIKRVTPLD-VIKEAADPTAQNDDERFDSDFTLMTGELARMLTSLVD 82796 L + ++ V D ++++ +D +++ +R D+DF L+T E++ ++ +LV+ Sbjct: 242 LDHNFSLTSVKFADELLEQNSDIDSEDVAQRLDADFFLLTSEISCLVDALVN 293 >ref|NP_817947.1|gp96 Length = 566 Score = 88.6 bits (218), Expect = 3e-16 Identities = 67/227 (29%), Positives = 106/227 (46%), Gaps = 4/227 (1%) Frame = +3 Query: 60480 FDDIAGIDEAKA-ELQQLVAFLRNPDRYQRLGGKIPKGVLVVGAPGTGKTLLARAVAGEA 60656 FD++ G+D K ++Q +A+ Y K+PKG +++G G GKTL +A+ E Sbjct: 281 FDNVGGLDVFKEWAIRQKIAYSPEARAYNL---KLPKGAMLIGVSGCGKTLSCQALGAEW 337 Query: 60657 AVPFFSISGSAFVEMFVGVGAARVRDLFEQAQQKAPCIVFVDELDALGKVRGVGPMSGND 60836 P + +A +VG +R+R +F + IV++DE++ + G G Sbjct: 338 NWPVVRLDINALKGKYVGESESRLRGIFSKIDALGQVIVYIDEVEKALEGAVSGSADGGV 397 Query: 60837 EREQTLNQLLVEMDGFQAGSGVIIMAATNRPEILDPALLRPGRFDRHIAIDRPDVNGRRQ 61016 + L +L M +AG ++M A N P L P LR GRFD ID P R Sbjct: 398 SAD-ALGAILTWMQD-RAGQAFVMMTA-NDPSKLPPEFLRKGRFDEVWWIDLPTRAERMS 454 Query: 61017 ILGVHVK---RVKLAADVDLGELASRTPGFVGADLANVVNEAALHAA 61148 + ++ R +DLG +A T GF GA++A + A+ A Sbjct: 455 VAAATLRSNGRDAETLGIDLGAVADATNGFTGAEIAACIEHDAMFNA 501 >ref|NP_076827.1|Csp Length = 66 Score = 84.3 bits (207), Expect = 5e-15 Identities = 41/62 (66%), Positives = 48/62 (77%) Frame = +2 Query: 38774 GTVKWFNETKGFGFISPDNGGDDLFAHFSEIRGTGFKTLAEGQKVSFEVKRGPKGLQASN 38953 GTVKWFN KGFGFI+ + G DLFAHFS I+ GFK+L EGQKV F+V+ G +GLQA N Sbjct: 4 GTVKWFNADKGFGFITSEEG-KDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQAVN 62 Query: 38954 IT 38959 IT Sbjct: 63 IT 64 >ref|NP_945089.1|gp58 Length = 297 Score = 64.7 bits (156), Expect = 4e-09 Identities = 50/182 (27%), Positives = 81/182 (44%) Frame = -1 Query: 187138 LQNMRVFSRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGE 186959 LQ + F G+FT AA+ LN GA+S+ V +LE L T L R + L LT AG+ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 186958 SYLRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVLPALTRYHAQFPDVSI 186779 Y R ILAD E A E+ L + + ++ + + A+ P+VS+ Sbjct: 69 QYADRVHAILADC--VEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 186778 ELSLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGVPARPQ 186599 + + + + +L D+ V +P + + + +P ++ VP PQ Sbjct: 127 RILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVP--PQ 184 Query: 186598 DL 186593 DL Sbjct: 185 DL 186 Score = 55.1 bits (131), Expect = 3e-06 Identities = 67/261 (25%), Positives = 105/261 (40%), Gaps = 14/261 (5%) Frame = +2 Query: 262820 FAAVVRCQTLSQAAAELGMTQPAITRRVQNLEEALGVTLLDRNTKPPRPTDIGRQVFEQC 262999 F A R ++AA EL + Q A++++V LE LG TL R+ K T G+Q ++ Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRV 74 Query: 263000 RAILREVDALRELTAGQQPPAGEFRIGVTQGLGELMLPALIGDLAAQWPALATQVTTAWG 263179 AIL + L +Q P I G L L I + +A+ P ++ ++ G Sbjct: 75 HAILADCVEATALVMKEQTP-HSLTIACASGTATLFLADRIAEFSAEHPEVSVRILVREG 133 Query: 263180 GLLVERIARRELDAALVFLAREMVLPAQVEGVRLLDTRLVA-------VGRK---GDWPR 263329 V + E D + ++ V P + G ++ + A GR+ D Sbjct: 134 ---VFNLNAAEFDIGVYYI--RDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVPPQDLME 188 Query: 263330 RSYRLADCHARGWVLNPDGCGFRAGLRRALDAQGLPMPVTLDAYGRDLQLQSVANGFGLG 263509 + +A+ R W+ G+R R + G T+ A + LQ +G G Sbjct: 189 ATLLVAEEQQRQWM------GWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAI 242 Query: 263510 L----MPLPLVEGSPLRDALD 263560 L M PLVE L A D Sbjct: 243 LGWKHMITPLVESGKLVLASD 263 Score = 42.4 bits (98), Expect = 0.022 Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 4/174 (2%) Frame = +3 Query: 201246 LRLLRVFKGVVQCGGMAAAELELNIGISTISRHVKDLETRLGLVLCRRGRAGFTLTPEGQ 201425 L+ L F + G A ELN+ +S+ V LET LG L R LT GQ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 201426 TVYEETLRLLASMEAFRSRIDGIHDTMGGELHIAVFDKTATNPHARLGDAIRQFADEAPA 201605 + +LA + + + + L IA TAT L D I +F+ E P Sbjct: 69 QYADRVHAILADCVEATALV--MKEQTPHSLTIACASGTAT---LFLADRIAEFSAEHPE 123 Query: 201606 VALNL----HVASINEVERGVIDGSYQVGIIPAHRNSGSLVYSALFDERMLLYC 201755 V++ + V ++N E + G Y + +P +G +A+ E + YC Sbjct: 124 VSVRILVREGVFNLNAAEFDI--GVYYIRDVPPPGIAG----TAIVAEDVHAYC 171 Score = 40.0 bits (92), Expect = 0.11 Identities = 35/123 (28%), Positives = 45/123 (36%), Gaps = 8/123 (6%) Frame = -2 Query: 253317 LALLDAIRATGSLSRAAARLGKAPSTVSHAARQLETRFDALLFDRRGYRLQLTPAGQLLT 253138 L DA G+ +RAA L A VS +LET LF R L LT AGQ Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71 Query: 253137 DEAARLALDVARLTQRVRQ--------VASGWEDRLWIVSDEVLEFDTLLPVVRAFDALD 252982 D + D T V + +A ++D + EF P V + Sbjct: 72 DRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILVR 131 Query: 252981 SGV 252973 GV Sbjct: 132 EGV 134 >ref|YP_164695.1|transposase Length = 387 Score = 64.3 bits (155), Expect = 5e-09 Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Frame = -2 Query: 87885 KLALDLVRRFDYIAVGNVSAVKLARTR-MAKSVYDASWSSFRNKLRYKAIAHGATFEEVD 87709 K+ +LV ++D IA+ ++ L + +AKS+ + SW FR L YK +G V Sbjct: 272 KITTELVEKYDVIAMEDLRTKNLLKNHHLAKSISNQSWREFRTILEYKCKWYGKQLIVVK 331 Query: 87708 EXXXXXXXXXXXXXXXXXRPKGIAGLRVREWACSDCGVEHDRDINAALNILRCG 87547 G L +REW C CG HDRD+NAA+NIL G Sbjct: 332 PNYTSQICSSCGYH------SGKKPLEIREWTCYKCGTHHDRDVNAAVNILNKG 379 >ref|NP_046572.1|ABC transporter Length = 705 Score = 63.5 bits (153), Expect = 9e-09 Identities = 55/201 (27%), Positives = 101/201 (50%), Gaps = 9/201 (4%) Frame = -1 Query: 77089 MQRVLDNVSFVAPRGSVTVIVGPSGSGKSTLLRTINHLERVDDGFIDIDGELIGYRRDGD 76910 M+ ++++++ + R +I+G SG+GKST ++++ L +V D I ++G Sbjct: 495 MRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGL--------- 545 Query: 76909 VLHELSERDVLKRRTAVGMVFQNFNLFPHLTVLENLIEAPIAVAGVTCDAAEHTARTLLA 76730 +++ D L R + + +N LF T+ ENL G D E +++ Sbjct: 546 ---DINRYDHLSIRKRIVYIDENPFLFKG-TIKENLC------MGEIFDQNEIENACIMS 595 Query: 76729 R----VGLADKADAYP-----RQLSGGQQQRVAIARALALRPKVLLFDEPTSALDPELVN 76577 + + DK +Y LS GQ+QR+A+ARA+ +P+VL+ DE S +DP+ N Sbjct: 596 QCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPD--N 653 Query: 76576 EVLDVIKELARSGTTLVIVTH 76514 L + + L R ++++TH Sbjct: 654 TKL-IYETLHRMDCLIILITH 673 Score = 60.8 bits (146), Expect = 6e-08 Identities = 48/184 (26%), Positives = 92/184 (50%), Gaps = 5/184 (2%) Frame = -2 Query: 171453 VLKGVSLDVQQGEVVCLIGPSGSGKSTVLRCINGFETYDEGSITIDGVKVDAHSKRIHEL 171274 +++ ++L + + + V +IG SG+GKST + ++ + SI ++G+ ++ R L Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDIN----RYDHL 553 Query: 171273 RMRVGMVFQRFNLFAHR-TALENVMEGPV----HXXXXXXXXXXXXXXALLDKVGLAHRM 171109 +R +V+ N F + T EN+ G + LDK ++++ Sbjct: 554 SIRKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQ-YSYKL 612 Query: 171108 NAYPSELSGGQQQRVAIARALAMEPQAILFDEPTSALDPELVGEVLGVMRGLARDGMTMV 170929 + S LS GQ+QR+A+ARA+ +PQ ++ DE S +DP+ + L R ++ Sbjct: 613 SENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPD---NTKLIYETLHRMDCLII 669 Query: 170928 VVTH 170917 ++TH Sbjct: 670 LITH 673 Score = 58.9 bits (141), Expect = 2e-07 Identities = 56/221 (25%), Positives = 108/221 (48%), Gaps = 8/221 (3%) Frame = +3 Query: 281793 VDDLHLSYGANP---ILKGVSFELKAGEVVCLLGASGSGKTTLLRAVAGLEQPSDGRIQL 281963 + ++L+ GA+P I++ ++ L + V ++G SG+GK+T ++++ L + D I L Sbjct: 483 IKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYL 542 Query: 281964 DDRVFFDGARRVDLPVEQRSLGLVFQSYALWPHRTVADNVGYGL-----KLRRVAPAEQK 282128 + D R L + +R + + + T+ +N+ G ++ Q Sbjct: 543 NG---LDINRYDHLSIRKRIVYIDENPFLF--KGTIKENLCMGEIFDQNEIENACIMSQC 597 Query: 282129 RRVQTALDQLGLGHLAERFPHQLSGGQQQRVAIARALVYNPPVILLDEPLSNLDAKLREE 282308 LD+ L+E + LS GQ+QR+A+ARA+++ P V++LDE LSN+D + Sbjct: 598 HEFICNLDKQYSYKLSENGSN-LSTGQKQRLALARAILHQPQVLILDESLSNID----PD 652 Query: 282309 ARAWLRELIVSLGLSALCVTHDQTEAMAMSDRILLLRNGRI 282431 + E + + + +TH+ + + L+ RN RI Sbjct: 653 NTKLIYETLHRMDCLIILITHNDPSNFKYNKK-LVFRNNRI 692 Score = 55.5 bits (132), Expect = 3e-06 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 15/166 (9%) Frame = +1 Query: 269629 GPDGALPVLDDVSLSVAAGEFVALLGPSGCGKSTLLRLVAGLDAARQGTIAQDGVPIERP 269808 G D +++D++L + + V ++G SG GKST + ++ L +I +G+ I R Sbjct: 491 GADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRY 550 Query: 269809 DPSRI---VVFQDPTLYPWR-RVRANVALGLEARGVARASQHRVDDALARVGLQDFANVF 269976 D I +V+ D + ++ ++ N+ +G Q+ +++A +F Sbjct: 551 DHLSIRKRIVYIDENPFLFKGTIKENLCMG------EIFDQNEIENACIMSQCHEFICNL 604 Query: 269977 PHQ-----------LSGGMAQRVALARALVNDPRLLILDEPLGKLD 270081 Q LS G QR+ALARA+++ P++LILDE L +D Sbjct: 605 DKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNID 650 >ref|YP_024488.1|putative glycerophosphoryl diester phosphodiesterase Length = 848 Score = 61.2 bits (147), Expect = 5e-08 Identities = 82/332 (24%), Positives = 123/332 (37%) Frame = +3 Query: 259314 TQPISAKVQVVGHRGASALRPEHTLASYRKAIEDGADVIEPDLVSTRDGVLVARHENEIS 259493 T+ + ++GHRGA+ EHT+ Y+ A++ GAD IE DL T+D L+ H++ I Sbjct: 609 TETMEKDFMLIGHRGATGYTDEHTIKGYQMALDKGADYIELDLQLTKDNKLLCMHDSTID 668 Query: 259494 GTTNVSALPQFASRKATKTIDGTQLTGWFTEDFTLAELKTLRARERIPQVRPANTAYNDQ 259673 TT GT G D TL+ ++T T+ N + Sbjct: 669 RTTT-----------------GTGKVG----DMTLSYIQT------------NFTSLNGE 695 Query: 259674 FEIPTFDEIVALAKQMSAQTGRTIHLYPETKHPTYFQSIGLPLEDRLVDALLKDAYTSRT 259853 IP+ D+++ G + Y ETK P L L+ S Sbjct: 696 -PIPSLDDVLN-------HFGTKVKYYIETKRPFDANMDRELLTQLKAKGLI--GIGSER 745 Query: 259854 ATVYIQSFEVANLKTIRNRIKSSQPNWKLVQLMDEAQQRPYDFVKANDTRTYGDLSTRDG 260033 V IQSF +L I N+ S+ P L E++ +D +YG Sbjct: 746 FQVIIQSFARESLINIHNQF-SNIPLAYLTSTFSESEM--------DDCLSYG------- 789 Query: 260034 MREIATYANGVGPYKTSIIAVAADGTLQQPTPYVRYAHEAGLVVHPYTFRPENNFLPASL 260213 YA + P T+I D AH GL VH +T + Sbjct: 790 -----FYA--IAPKYTTITKELVD-----------LAHSKGLKVHAWTVNTKE------- 824 Query: 260214 KDGGTPATRNTAGSVREIQAYLRAGIDGFFTD 260309 E+Q+ ++ G+DGFFT+ Sbjct: 825 ----------------EMQSLIQMGVDGFFTN 840 >ref|NP_061549.1|Orf53 Length = 354 Score = 47.0 bits (110), Expect = 0.001 Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Frame = -1 Query: 110401 ALEQRTAALLAAQVRIQELEQARAADDASHQALKAEIERLKADNAEGDRALAEARADFTT 110222 AL + A + ELE+ RA A Q K ER+ + AE +R AE RA Sbjct: 175 ALREALVAREKYEAEQAELERLRAEAAAREQ--KEREERIAREAAEAERLAAERRAQ--- 229 Query: 110221 QLDRLRDDAGRAEERLRASEKRALQEIDRERLAAARLQKELDAATSRAEQ--RDAQQRKD 110048 RD R E +A+ +R E+ RLAA + ++E A RAEQ RDAQ+R + Sbjct: 230 ---EERDATARREAEAKAAAERRELEL---RLAAEKAEREKLEAQQRAEQAERDAQRRAE 283 Query: 110047 TA 110042 A Sbjct: 284 EA 285 >ref|NP_818239.1|gp188 Length = 318 Score = 43.1 bits (100), Expect = 0.013 Identities = 28/76 (36%), Positives = 38/76 (50%) Frame = -3 Query: 200378 GVVVPPKGYLKRLRDICTAHDILLIFDEVITGFGRAGAMTGADAFGVVPDIMNFAKQVTN 200199 G +V P+ L + D T ++ DE TGFGR G + G A+G PD + F Sbjct: 117 GRLVAPEVVLDEV-DRATKSGRTVVADESATGFGRLGRIWGHQAYGFTPDAIIFGGPAGG 175 Query: 200198 GVQPLGGVIATKEIYD 200151 G+ LGGVI E+ D Sbjct: 176 GL-TLGGVIGPAELLD 190 >ref|NP_061524.1|Orf28 Length = 687 Score = 40.8 bits (94), Expect = 0.065 Identities = 75/317 (23%), Positives = 124/317 (39%), Gaps = 47/317 (14%) Frame = -2 Query: 37053 LDGFRGILATSVVFHHFACNQALLSTGVWGAGTDFLRNLGTIPVAMFFMVTGLLFWERAC 36874 +DG R + +VV +H AG + G + V +FF+++G L Sbjct: 19 IDGLRALSILAVVLYH--------------AGVPMVYG-GFVGVDIFFVISGFLIVTHIV 63 Query: 36873 RGTLDVR----TFFVGRVRRLAPLYLF--YAAVIVACTLYWFPGNAVGAPTQLLADLLKA 36712 D R F+ R R+ P YL + +A + P Q++ L Sbjct: 64 SSIQDDRFLFGEFWARRALRILPPYLLVLFVCSAIAPFILVLPREINEFGDQVIYSALML 123 Query: 36711 VS---LGWFGAFPINGAERTPYLSGVWWTLAYEWRFYVAVP---FLAWFVATR-AWRKLL 36553 V+ LG G F +G T L +W +L+ E +FY+ P FL + +R RK Sbjct: 124 VNHYFLGQQGYF--DGLSETKPLLHLW-SLSVEEQFYIVAPVVIFLLYVSTSRLGQRKAS 180 Query: 36552 ALAIVS----------ACAALFGPPGGMALLF-----------AFGAVAYEVSRHPAICA 36436 +++ S C AL G G F A GA+A+ V + Sbjct: 181 VISVFSVLCVFAVSLYGCIALSGDGAGKNYSFFLMPLRAWEFIAGGAIAFAVPFAQRL-G 239 Query: 36435 RLATKPAATVALLIL--------ALSPSPTERYSIEGALPLLPVFLCIACGNTFYGVLRT 36280 RLA + A +++L SP P + +P++ L I CG + + +L + Sbjct: 240 RLALEIIAIAGVVMLFYAIFFFNGKSPYPAGK----ALVPVIGAALIILCGVSNHKILVS 295 Query: 36279 RPLA-----LLGTASFS 36244 R L+ ++G S++ Sbjct: 296 RILSFRVFVMIGLVSYA 312 >ref|YP_024716.1|gp43 Length = 128 Score = 40.8 bits (94), Expect = 0.065 Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Frame = -3 Query: 64775 GQPRPEPA---HRGTGRVAAGNRGDDGGIHVDGAPERGKRATGQHARRECIGRRAPRQLG 64605 G P PEPA H G R R D+ G DG PE G+ A + G P QL Sbjct: 31 GGPAPEPAAKPHDGLDR-----RRDEVGAGHDGRPEEGEAEKRHDAEHDRHG--PPGQLD 83 Query: 64604 GRPRGRHDDGNR 64569 +P G HD GNR Sbjct: 84 EQPDGEHDAGNR 95 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 40.0 bits (92), Expect = 0.11 Identities = 50/180 (27%), Positives = 57/180 (31%) Frame = +1 Query: 193873 ALRSRRGSCRHTRDSSHARLHRDRLASSLPPRRVGVTATARVAPAHR*NGSGRHARPRPL 194052 ALR R C R + H R R + P G V R + R RP P Sbjct: 115 ALRPRAPEC--DRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRR---TRRRRRPDPR 169 Query: 194053 TRARTDVHVQHDAMHESTHRPIRPSRTAPFGADRGARRLPVSARTGMMSASVSAPAVRFG 194232 R + + V HR GA R RR+ V AR G G Sbjct: 170 RRVQPRLGV-------GVHRRR--------GARRVGRRVRVRARPGP------------G 202 Query: 194233 GRRHPERHXXXXXXXXXXXXXXGPVRPSHRAHVTPRLQNARRHRPLPDLRARRRSHRPHP 194412 R P R P H V PR + RRHR LR R R HR P Sbjct: 203 AARRPRRRP----------------HPEHPRAVRPRRRTGRRHRRRASLRPRHRRHRSTP 246 >ref|YP_006628.1|Gp48 Length = 95 Score = 40.0 bits (92), Expect = 0.11 Identities = 20/50 (40%), Positives = 31/50 (62%) Frame = +3 Query: 114582 ILVGFRKSAGLTQAQLAARLGITQQSYAQLEANPSAVSIERLFKVMNALG 114731 +L R+ AGL+++ LA R+GIT + ++LE NP S++ L K A G Sbjct: 37 MLYEMREKAGLSKSALAERMGITPSAISRLEGNPLGASMKTLNKYAQACG 86 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 38.5 bits (88), Expect = 0.32 Identities = 25/100 (25%), Positives = 42/100 (42%) Frame = -3 Query: 112286 GELVVLLHGWPQTWYTWRHVMPVLAQEGYRVVAVDYRGAGESDKPLGGYDKASMAGDIRA 112107 G +V LHG + + ++ LA+ G+RV+A+D G S G+ M Sbjct: 22 GAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTGHTVEDMTRVTLK 81 Query: 112106 LVRQLGATRIHLVGRDIGVMVAYAYAAQRPAEIVKLAMLD 111987 + +L R G +G + AA+ P + +LD Sbjct: 82 TLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLD 121 >ref|NP_046829.1|gp14 Length = 485 Score = 38.5 bits (88), Expect = 0.32 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Frame = +2 Query: 82874 LRGGVRRFLDHVKRRDALDRQRWRQHERDPVIPRHREAHALLAGFDVPAHVVRFQRV-AD 83050 +R R + V+R++A+ W + R A+ L+ G DVP ++R + V D Sbjct: 344 IRAAESRLIKKVERKNAIFGGAWEE--------AMRLAYRLMKGGDVPPDMLRMETVWRD 395 Query: 83051 VSHRGAAFAARAQLGVLIDGEAARRLAGQQPVRHRGDRRTRDMNARERQRVDRFDEQAAD 83230 S +AA+A + G GQ + R+ + ER+ + R+DE+ A Sbjct: 396 PST--PTYAAKADAATKLYGN------GQGVIPRERARKDMGYSIAEREEMRRWDEEEAA 447 Query: 83231 VVGKRLGRRIDDEPAI 83278 + LG +D +P + Sbjct: 448 MGLGLLGTMVDADPTV 463 >ref|NP_932394.1|DNA polymerase accessory protein Length = 319 Score = 38.5 bits (88), Expect = 0.32 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Frame = +3 Query: 60573 GKIPKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEMFVGVGAARVRDLFEQ-A 60749 G+IP +L +PGTGKT +ARA+ E F ++G+ F VRD+ A Sbjct: 40 GRIPNIILHSPSPGTGKTTVARALVAEIDAEFLFVNGADAKIDF-------VRDVMTPFA 92 Query: 60750 QQKAPC----IVFVDELDALG 60800 K C ++ VDE D G Sbjct: 93 SSKTFCKGGKVIIVDEFDRAG 113 >ref|NP_891600.1|Gp44 Length = 324 Score = 38.1 bits (87), Expect = 0.42 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%) Frame = +3 Query: 60573 GKIPKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEMFVGVGAARVR---DLFE 60743 G+IP +L +PGTGKT +A+A+ + V + ++G+ F+ R L E Sbjct: 40 GRIPSMILHSPSPGTGKTTVAKALCEDVGVDYLFVNGADCKIDFIRDEITRFAQSVSLDE 99 Query: 60744 QAQQKAPCIVFVDELDALG 60800 + ++K +V +DE D G Sbjct: 100 EKREKGK-VVIIDEYDRAG 117 >ref|NP_046944.1|gp48 Length = 95 Score = 38.1 bits (87), Expect = 0.42 Identities = 18/50 (36%), Positives = 31/50 (62%) Frame = +3 Query: 114582 ILVGFRKSAGLTQAQLAARLGITQQSYAQLEANPSAVSIERLFKVMNALG 114731 +L R+ AGLT++ LA R+G+ + ++LE+NP S++ L + A G Sbjct: 37 MLYEMREKAGLTKSALAERMGLQPSAISRLESNPLGASMKTLSRYAKACG 86 >ref|NP_203466.1|hypothetical protein Length = 536 Score = 38.1 bits (87), Expect = 0.42 Identities = 34/106 (32%), Positives = 45/106 (42%), Gaps = 2/106 (1%) Frame = -1 Query: 95566 GGGSVAMTSGALNASR--WGLRGREDLGGGMAAVFALENGFSGTTGKLSQKGVDLFGRQA 95393 GGG VA+ G AS +GLRG LGG A + + G LS+ GV R Sbjct: 245 GGGDVAIWQGTDPASSATFGLRGVWSLGGSPPAGRRIATDYGGDVLVLSRLGVRPLSRLV 304 Query: 95392 WVGVSSQTAGTLSFGRQYDLILDYVTPLGASGPGWGGNLAVHPYDN 95255 V T T + ++ AS PGW ++ +HP DN Sbjct: 305 AGEVDKDTYVTAKVSNLFSALM----LTRASLPGW--SMQLHPEDN 344 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,079,347,587 Number of Sequences: 14420 Number of extensions: 20682772 Number of successful extensions: 80131 Number of sequences better than 0.5: 22 Number of HSP's better than 0.5 without gapping: 11862 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 79986 length of database: 3,019,461 effective HSP length: 128 effective length of database: 1,173,701 effective search space used: 112951115735 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig278 (271,873 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 230 4e-59 ref|NP_569803.1|hypothetical protein 201 3e-50 ref|NP_690795.1|ORF11 199 1e-49 ref|NP_047955.2|gp9a 177 4e-43 ref|NP_680517.1|putative primase 175 2e-42 ref|NP_813724.1|gp9a 171 4e-41 ref|NP_050131.1|putative DNA-polymerase or DNA-primase 160 5e-38 ref|NP_511033.1|primase 153 9e-36 ref|NP_958698.1|Bbp29 121 4e-26 ref|NP_996591.1|primase 121 4e-26 ref|NP_996639.1|primase 121 4e-26 ref|YP_024966.1|putative primase 115 2e-24 ref|YP_006919.1|putative RNaseH ribonuclease 102 2e-20 ref|YP_024889.1|putative primase 100 9e-20 ref|NP_861819.1|NudE nudix hydrolase 86 1e-15 ref|NP_899299.1|conserved hypothetical protein 80 1e-13 ref|NP_795676.1|putative DNA primase 74 5e-12 ref|NP_049737.1|NudE nudix hydrolase 74 7e-12 ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family 73 1e-11 ref|NP_803721.1|ORF155 72 2e-11 ref|NP_817947.1|gp96 70 7e-11 ref|NP_818646.1|gp108 69 3e-10 ref|NP_945089.1|gp58 65 2e-09 ref|NP_061531.1|integrase 65 3e-09 ref|NP_848235.1|integrase 60 1e-07 ref|NP_817718.1|gp41 60 1e-07 ref|NP_046572.1|ABC transporter 60 1e-07 ref|YP_024677.1|gp04 58 5e-07 ref|NP_958252.1|hypothetical protein 58 5e-07 ref|NP_612844.1|Gp15 protein 58 5e-07 ref|NP_064745.1|gp7 54 7e-06 ref|NP_817615.1|gp26 54 7e-06 ref|NP_958556.1|putative integrase 53 1e-05 ref|NP_813780.1|internal virion protein D 49 2e-04 ref|NP_046842.1|minor tail subunit 49 2e-04 ref|NP_817647.1|gp58 49 2e-04 ref|YP_024873.1|nudix hydrolase motif containing protein 47 0.001 ref|NP_052116.1|internal virion protein D 46 0.002 ref|NP_958506.1|putative integrase 45 0.003 ref|NP_046584.1|putative transglycosylase 45 0.003 ref|NP_046874.1|putative DNA primase 45 0.004 ref|YP_006619.1|Gp39 45 0.004 ref|NP_695118.1|putative tail protein 44 0.007 ref|NP_039690.1|predicted 86.4kd protein; 52Kd observed 44 0.007 ref|NP_040733.1|morphogenesis protein B 44 0.007 ref|NP_039722.1|predicted 14.5Kd protein 43 0.016 ref|NP_944326.1|gp18 42 0.021 ref|NP_040602.1|Tail fiber protein 42 0.021 ref|NP_056689.1|putative minor tail protein 42 0.028 ref|NP_665958.1|putative glutaminase 42 0.036 ref|NP_040700.1|hypothetical protein 41 0.062 ref|NP_076780.1|integrase 41 0.062 ref|NP_803396.1|tail length tape measure protein 40 0.081 ref|NP_058454.1|orf 16 40 0.081 ref|NP_061549.1|Orf53 40 0.081 ref|NP_891600.1|Gp44 40 0.081 ref|NP_835566.1|hypothetical protein 40 0.14 ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase access... 40 0.14 ref|YP_006507.1|Sit 39 0.18 ref|NP_996722.1|lysin 39 0.18 ref|NP_046936.1|gp41 39 0.18 ref|NP_663686.1|structural protein 39 0.23 ref|NP_112716.1|LYS 39 0.23 ref|NP_112710.1|ORF47 39 0.23 ref|NP_108727.1|minor structural protein 3 39 0.23 ref|NP_076626.1|endopeptidase 39 0.23 ref|NP_932394.1|DNA polymerase accessory protein 39 0.23 ref|NP_795429.1|putative integrase 39 0.31 ref|NP_061640.1|phi PVL ORF 15 and 16 homologue 39 0.31 ref|NP_705643.1|gp17 39 0.31 ref|NP_958122.1|gp17 39 0.31 ref|NP_624306.1|hypothetical protein 39 0.31 ref|NP_817868.1|gp17 38 0.40 ref|NP_052286.1|hypothetical protein 38 0.40 >ref|NP_945090.1|gp59 Length = 429 Score = 230 bits (587), Expect = 4e-59 Identities = 126/410 (30%), Positives = 214/410 (52%), Gaps = 1/410 (0%) Frame = +3 Query: 265968 KRAVSAMAIGNAMEWFDFGVYSYIAVTLGKVFFPSSSPSXXXXXXXXXXXXXXXVRPLGG 266147 +RAV A+ +GN EWFDF YS+ +V + K+FFPS+ + +RP+GG Sbjct: 20 RRAVIAVIVGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLLSVSTIGVGFFMRPIGG 79 Query: 266148 MVFGPLGDRIGRQRVLAATMIMMAVGTFAIGLIPSYASIGIMAPILLLVARLVQGFSTGG 266327 +V G + D++GR+ L T+ +M GT IG P+Y G+ AP++++VARL+QGFS GG Sbjct: 80 IVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGG 139 Query: 266328 EYGGAATFIAEFSTDKRRGFMGSFLEFGTLIGYVLGAGVVALLTASLSQEALLSWGWRVP 266507 E GGA ++ E +R G+ S+++ +L + + + L ++ + SWGWR+P Sbjct: 140 EMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWRIP 199 Query: 266508 FLIAGPLGLIGLYIRMKLEETPAFKRQAEEREAQDKAVPKARFRETLLRNWRALLLCVGL 266687 FL+ LG +G+YIR +L + P F A+ER + V E + R L+ GL Sbjct: 200 FLLGLGLGPVGIYIRSRLND-PGF--PADERLGECAPVV-----EVVRSFSREALVGFGL 251 Query: 266688 VLIFNVTDYMVLSYLPSFMSSTLHFDESHSXXXXXXXXXXXXXXTLYAGRLSDKVGRKPV 266867 V+ + V Y++L Y+P++ S L S T G LSD GR+ Sbjct: 252 VVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLFGRRWF 311 Query: 266868 MLAGCVGLLVLSIPSLMLIHTGT-TASVFXXXXXXXXXXSCFTGVMPSALPALFPTEIRY 267044 + + +V + P +++ ++ + + G + +AL +FP + Sbjct: 312 LAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFPDGVLS 371 Query: 267045 GALAIGFNVSVSLFGGTTPLVTAWLVDVTHNLMMPAYYMMGAALIGIVSV 267194 ++I +N++V FGG + + W + THN + PA+Y++ AA++ ++SV Sbjct: 372 TGISISYNLAVITFGGFSAAIITWAIATTHNNLAPAFYVIAAAIVSLISV 421 >ref|NP_569803.1|hypothetical protein Length = 867 Score = 201 bits (511), Expect = 3e-50 Identities = 156/451 (34%), Positives = 218/451 (48%), Gaps = 24/451 (5%) Frame = +2 Query: 219635 ASALEADARMFDELRRAFLAKGNGTNGHAAKPKHPRGKDGRMTAPLDAIPARLSGEIAAT 219814 A A + ARM D A LA G + H + PR AP+ P + +G AT Sbjct: 344 AWATDHAARMTD----AELASEIGAHLHLWEKAEPRPVT---LAPMQ--PEQTAGN-TAT 393 Query: 219815 VELSE-------------DAVAVVFASAYQGRLLFETLRGKWFRWEDTHWKQ--DEGARV 219949 V+LSE A + A RL + GKW W+ T W+ D G + Sbjct: 394 VQLSEIIRESTANVTPTDTGNADLLVRACSDRLRWCPESGKWLVWKGTRWQPSPDGGEAI 453 Query: 219950 TREMIRRTVRKMCRGEP-------RWLTARVVDAIEKLARTDERTCPS-EPFDANPWLLA 220105 + K+ G+ R L R +D + LA+ S DA+P+ L Sbjct: 454 MAAIEVVQSIKVEDGDKAGGQHKMRSLQRRSLDNMVALAKCRPGMRVSLADLDADPYALN 513 Query: 220106 TPAGVVDLRDGSSRAARPEDMMTRVTGCAPDFGGDCPRWRAFLGACIHGFDEYGEPRSAP 220285 TP+GVV+L+ G RPE TRVTG + G PRW AFL G Sbjct: 514 TPSGVVNLKTGELTPHRPEGWHTRVTGAGYERDGAAPRWWAFLHRTFGG----------- 562 Query: 220286 PGDEMVRFLQRMCGYFLTGSTRFEFVFLLFGGGANGKSTFLRVLREILGDYFVSVAVETF 220465 MV ++QR+ GY G + LFG G+NGKS + VL +LGDY ++ A F Sbjct: 563 -DKSMVEYVQRLAGYAAIGEVTHHVLPFLFGAGSNGKSVLMDVLSAVLGDYAIT-APGNF 620 Query: 220466 LQSAHDQHPTGMAHIEGARLAACGELPDNRSWNSQRVKDISSGEKISARHMRQDFYDFVP 220645 L + ++H T +A + GARL C E+ + ++ +VK ++ G+ +S R MRQDF+DFVP Sbjct: 621 LLAGRERHETEIARLHGARLVVCSEVNADSKFDEAKVKLLTGGDVLSGRFMRQDFFDFVP 680 Query: 220646 VCKLLFVGNHRPRVRQTGEAEKRRFRIIPFVHKVPENRR-DSTLEDALREEYPAILAWML 220822 L +GNH+P V+ G + RRFR+IPF H VPE R + + EE AILAW+ Sbjct: 681 SHTLFLMGNHQPDVKAGGTSFFRRFRLIPFEHIVPERERVEGLAHQLVAEEGDAILAWIA 740 Query: 220823 DGAKAVIAEGFASMPGAVTKATNDYFAENDT 220915 DGA+ V+ +G P +V AT Y ++DT Sbjct: 741 DGARQVL-DGGMREPASVLAATAQY--QDDT 768 >ref|NP_690795.1|ORF11 Length = 806 Score = 199 bits (505), Expect = 1e-49 Identities = 127/433 (29%), Positives = 207/433 (47%), Gaps = 16/433 (3%) Frame = +2 Query: 219860 YQGRLLFETLRGKWFRWEDTHWKQDEGARV---TREMIRRTVRKMCRGEPRWLTARVVDA 220030 Y G+ + +W W W++D ++ T + +R + E + ++ D Sbjct: 341 YHGKNIRYCNELEWLIWNGKMWQEDSKRKIEAITAQTLRAIYGEAQATEDGYREKQLNDW 400 Query: 220031 IEKLARTDER-----------TCPSEPFDANPWLLATPAGVVDLRDGSSRAARPEDMMTR 220177 +K R + R + + D++ +L GV+DL+ G + + T+ Sbjct: 401 AKKCERRNIRMNTILDARPMVSVRKQELDSHKYLFNCENGVIDLKTGDLLPHDRDLLFTK 460 Query: 220178 VTGCAPDFGGDCPRWRAFLGACIHGFDEYGEPRSAPPGDEMVRFLQRMCGYFLTGSTRFE 220357 ++ A + DCP W+AF+ + DE G P E++ FLQ+ GY LTG T + Sbjct: 461 ISPVAYEKDADCPNWKAFMESIF--IDEEGNPNY-----EIIEFLQKAIGYSLTGETTEQ 513 Query: 220358 FVFLLFGGGANGKSTFLRVLREILGDYFVSVAVETFLQSAHDQHPTG-MAHIEGARLAAC 220534 +F LFG G NGKSTF+ ++++LGDY +TF++ +D +A ++GAR + Sbjct: 514 VMFFLFGNGRNGKSTFINTVQQLLGDYGRQTNSDTFIKKKNDSSINNDIARLDGARFVSA 573 Query: 220535 GELPDNRSWNSQRVKDISSGEKISARHMRQDFYDFVPVCKLLFVGNHRPRVRQTGEAEKR 220714 E + + + VK I+ GEK+SAR +RQ++++F P K+ F NH+P V+ + E R Sbjct: 574 VESEEGQQLSESLVKQITGGEKMSARFLRQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWR 633 Query: 220715 RFRIIPFVHKVPENRRDSTLEDALREEYPAILAWMLDGAKAVIAEGFASMPGAVTKATND 220894 R R++PF +P+ + D L L E P IL W ++G EG P + KAT Sbjct: 634 RIRLVPFTVTIPKEKVDKQLPQKLAAEMPGILRWAVEGCLMWQKEGLTE-PEDIRKATEG 692 Query: 220895 YFAENDTFALWAGERLLLHKDYSVPAGVAYANYTRW-FEGGGYEGRPVSSREFKMRMEDM 221071 Y + D + ER +LH V A Y +Y W FE E + +R F ++E Sbjct: 693 YREDMDILGPYMEERCILHPTTKVEAKELYKDYKDWCFENDEIE---LKNRAFYRQLEIR 749 Query: 221072 GATHDRDNRGRLY 221110 G R N + Y Sbjct: 750 GFKKYRGNYNKNY 762 >ref|NP_047955.2|gp9a Length = 805 Score = 177 bits (449), Expect = 4e-43 Identities = 150/517 (29%), Positives = 229/517 (44%), Gaps = 12/517 (2%) Frame = +2 Query: 219608 EDARPEREAASALEADARMFDELRRAFLAKGNGTNGHAAKPKHPRGKDGRMTAPLDAIPA 219787 + ARP R+ A +EA+ R + R + + T G A A Sbjct: 312 KSARPVRDRAQ-VEAEHRKAEVAHRTGAVQVSSTQGADA--------------------A 350 Query: 219788 RLSGEIAATVELSEDAVAVVFASAYQGRLLFETLRGKWFRWEDTHWKQDEGARVTRE--- 219958 R+ G++ +T S+ A + GR+ + + G +F W+ W + RV +E Sbjct: 351 RILGDLVSTYGESDAMNAHALVAWTDGRIKYASGLG-YFVWDGVTWVKS-ATRVRQEIHA 408 Query: 219959 MIRRTVRKMCRGEPRWLTARV-VDAIEKLARTDERTCPS-----EPFDANPWLLATPAGV 220120 M V C E R T +DA+ T+ R+ PS E FDAN LL+ GV Sbjct: 409 MGAALVLAGCLPESRGFTMTTRIDAL----MTELRSVPSVHVEAEEFDANAHLLSFANGV 464 Query: 220121 VDLRDGSSRAARPEDMMTRVTGCAPDFGGDCPRWRAFLGACIHGFDEYGEPRSAPPGDEM 220300 VDLR G RA DM+T D PRW FL P ++ Sbjct: 465 VDLRTGKLRAHDKGDMLTVSLPIEYDPNAQAPRWEQFLQEIF------------PNNADL 512 Query: 220301 VRFLQRMCGYFLTGSTRFEFVFLLFGGGANGKSTFLRVLREILGDYFVSVAVETFLQSAH 220480 V +++R+ GY +TG+T + +L+G GANGKS F L ++ G + TF + Sbjct: 513 VGYMRRLVGYGITGNTSEQCFAVLWGKGANGKSVFTETLTDVFGRITKTTPFATFEDKGN 572 Query: 220481 DQH-PTGMAHIEGARLAACGELPDNRSWNSQRVKDISSGEKISARHMRQDFYDFVPVCKL 220657 P +A + G+RL E + + +K ++ +K++AR +RQ+F+ F P + Sbjct: 573 GGGIPNDLAALRGSRLVMASEGESGKPMSEAVLKRVTGKDKVTARFLRQEFFTFAPTFLI 632 Query: 220658 LFVGNHRPRVRQTGEAEKRRFRIIPFVHKVPENRRDSTLEDALREEYPAILAWMLDGAKA 220837 + NH+P+ + E RR ++IPFV RD L+ LR E I+AW + GA Sbjct: 633 MLATNHKPKFKSQDEGLWRRVKLIPFVRYFAPEERDYDLDRKLRAESAGIVAWAVRGAVE 692 Query: 220838 VIAEGFASMPGAVTKATNDYFAENDTFALWAGERLLLHKDYSVPAGV-AYANYTRWFEGG 221014 A G P +++ AT +Y A +D A + L D ++ +G AY +Y W E Sbjct: 693 WYANGLGD-PESISTATREYRATSDALAGFFPGVLDAADDSAIVSGADAYNSYRDWCEAE 751 Query: 221015 GYEGRPVSSRE-FKMRMEDMGATHDRDNRGRLYRGAK 221122 G + V SR+ F ME+ G + N G G K Sbjct: 752 GLKSTEVWSRKAFYGAMEERGIGKKKTNTGIALVGVK 788 >ref|NP_680517.1|putative primase Length = 770 Score = 175 bits (444), Expect = 2e-42 Identities = 117/364 (32%), Positives = 173/364 (47%), Gaps = 6/364 (1%) Frame = +2 Query: 220073 EPFDANPWLLATPAGVVDLRDGSSRAARPEDMMTRVTGCAPDFGGDCPRWRAFLGACIHG 220252 E FD + LL T G VDL DG + M ++ TG D P WR FL Sbjct: 424 EEFDRDKILLNTINGYVDLSDGELHDHDVKKMFSKETGVEYTDTVDSPEWRQFLDQI--- 480 Query: 220253 FDEYGEPRSAPPGDEMVRFLQRMCGYFLTGSTRFEFVFLLFGGGANGKSTFLRVLREILG 220432 FD +E++ +LQ+ GY LTGST + +F+L+G G NGKS F+ L+ + G Sbjct: 481 FDH---------DEELIDYLQKAIGYSLTGSTEEQVMFILYGNGRNGKSVFMDTLKHVAG 531 Query: 220433 DYFVSVAVETFLQSAHDQHPTG-MAHIEGARLAACGELPDNRSWNSQRVKDISSGEKISA 220609 Y S++ ++ + D +A ++GARL E + + VK+++ G+ ++A Sbjct: 532 SYAKSMSAKSIMIKQSDSAANSDIARLKGARLVTASEPNEGVRLDEGLVKELTGGDMVTA 591 Query: 220610 RHMRQDFYDFVPVCKLLFVGNHRPRVRQTGEAEKRRFRIIPFVHKVPENRRDSTLEDALR 220789 R + +++ P KL NH+P +R T + RR +IPF ++PEN+ D L L Sbjct: 592 RFLYGSEFEYKPEFKLWLATNHKPIIRGTDDGIWRRLMLIPFNVQIPENKVDKRLAYKLE 651 Query: 220790 EEYPAILAWMLDGAKAVIAEGFASMPGAVTKATNDYFAENDTFALWAGERLLLHKDYSVP 220969 E IL W +DGA EG + P +V A+ Y AE DT L+ + L DY P Sbjct: 652 RESVGILNWAVDGALKWQREGLKA-PASVQAASKSYRAEMDTLELFVRDCCDLRPDYQAP 710 Query: 220970 AGVAYANYTRWFEGGGYEGRPVSSREFKMRMEDMGAT-----HDRDNRGRLYRGAKLDTS 221134 AG + Y W E G E+KMR + GA + N G Y G K+ + Sbjct: 711 AGELFKAYQSWAESNG---------EYKMRKQKFGAEMKQKFMSKKNSGIFYVGLKIKSD 761 Query: 221135 GDLS 221146 L+ Sbjct: 762 PRLN 765 >ref|NP_813724.1|gp9a Length = 808 Score = 171 bits (432), Expect = 4e-41 Identities = 135/459 (29%), Positives = 204/459 (44%), Gaps = 12/459 (2%) Frame = +2 Query: 219785 ARLSGEIAATVELSEDAVAVVFASAYQGRLLFETLRGKWFRWEDTHWKQDEGARVTRE-- 219958 AR+ GE+ +T S+ A + GR+ + G +F W+ W + RV +E Sbjct: 353 ARILGELVSTYGESDAMNAHALVAWTDGRIKYAPGLG-YFVWDGVTWVKS-ATRVRQEIH 410 Query: 219959 -MIRRTVRKMCRGEPRWLTARV-VDAIEKLARTDERTCPSE-----PFDANPWLLATPAG 220117 M V C E R T +DA+ T+ R+ PS FDA P LL+ G Sbjct: 411 AMGAALVLAGCLPESRGFTMTTRIDAL----MTELRSVPSVHVDAGEFDAKPHLLSFRNG 466 Query: 220118 VVDLRDGSSRAARPEDMMTRVTGCAPDFGGDCPRWRAFLGACIHGFDEYGEPRSAPPGDE 220297 VVDLR G+ RA DM+T D PRW FL P E Sbjct: 467 VVDLRTGNIRAHDKNDMLTVSMPSDYDPTAKAPRWEQFLREIF------------PDHPE 514 Query: 220298 MVRFLQRMCGYFLTGSTRFEFVFLLFGGGANGKSTFLRVLREILGDYFVSVAVETFLQSA 220477 + ++QR+ GY +TG+T + +L+G G+NGKS + ++ + TF Sbjct: 515 LAEYMQRLTGYGITGNTSEQCFAVLWGKGSNGKSVYTETCTDLFAPITKTTPFATFEDKG 574 Query: 220478 HDQH-PTGMAHIEGARLAACGELPDNRSWNSQRVKDISSGEKISARHMRQDFYDFVPVCK 220654 + P +A + ARL E + + +K ++ +K++AR +RQ+F+ F P Sbjct: 575 NGGGIPNDLAALRDARLVMASEGESGKPMSEAVLKRVTGKDKVTARFLRQEFFTFTPKFL 634 Query: 220655 LLFVGNHRPRVRQTGEAEKRRFRIIPFVHKVPENRRDSTLEDALREEYPAILAWMLDGAK 220834 +L NH+P+ + E RR ++IPF RD L+ LR E I+AW + GA Sbjct: 635 ILLATNHKPKFKSQDEGLWRRVKLIPFTRYFAPEERDYDLDRKLRAEAAGIIAWAVRGAV 694 Query: 220835 AVIAEGFASMPGAVTKATNDYFAENDTFA-LWAGERLLLHKDYSVPAGVAYANYTRWFEG 221011 A G P ++KAT +Y A +D A + G + +P AY YT W E Sbjct: 695 DWYANGLRD-PECISKATREYRATSDALAGFFPGVLEAADDTHVLPGADAYTAYTDWCEA 753 Query: 221012 GGYEGRPVSSRE-FKMRMEDMGATHDRDNRGRLYRGAKL 221125 G + + V SR+ F ME+ + N+G G K+ Sbjct: 754 EGLQRKEVWSRKAFYGAMEERNVMKKKTNKGIALVGVKV 792 >ref|NP_050131.1|putative DNA-polymerase or DNA-primase Length = 771 Score = 160 bits (405), Expect = 5e-38 Identities = 125/455 (27%), Positives = 191/455 (41%), Gaps = 26/455 (5%) Frame = +2 Query: 219848 FASAYQGRLLFETLRGKWFRWEDTHWKQDEGARVTREMIRRTVRKMCRGEPRWLTARVVD 220027 F + +++ + W+ + ++WKQD + E V + E + V + Sbjct: 330 FLDMFPHSIIYSMVDETWYVYNGSYWKQDNQGLI--EKAADKVINNLKNEKHVIPEDVDE 387 Query: 220028 AIEKLA----RTDERTCPSE-----------PFDANPW-----LLATPAGVVDLRDGSSR 220147 K A ER+ S+ P N W LL TP+G +DL +G+ Sbjct: 388 DDYKKAWKKFEKRERSRSSKVNMVNEIKHLVPVLHNQWDQEHMLLNTPSGYIDLTNGTLH 447 Query: 220148 AARPEDMMTRVTGCAPDFGGDCPRWRAFLGACIHGFDEYGEPRSAPPGDEMVRFLQRMCG 220327 + M T+ TG DCP W FL E++ F+Q++ G Sbjct: 448 NHKYNKMFTQETGVDFSENVDCPLWIKFLNQTFQN------------DQELIHFVQKIIG 495 Query: 220328 YFLTGSTRFEFVFLLFGGGANGKSTFLRVLREILGDYFVSVAVETFLQS---AHDQHPTG 220498 Y LTGS + +F+L+G G NGKS L +++ I G Y ++ T +Q + + Sbjct: 496 YSLTGSNAEQKMFILYGNGRNGKSVLLNIVKYIFGSYAKTMNATTIMQKRIGSSQGATSD 555 Query: 220499 MAHIEGARLAACGELPDNRSWNSQRVKDISSGEKISARHMRQDFYDFVPVCKLLFVGNHR 220678 +A +EGARL E + + VK ++ G+ + AR+ ++F PV KL NH+ Sbjct: 556 IARLEGARLVVSSEANEGDRLDESLVKQMTGGDTLVARYQYGKDFEFDPVFKLFMATNHK 615 Query: 220679 PRVRQTGEAEKRRFRIIPFVHKVPENRRDSTLEDALREEYPAILAWMLDGAKAVIAEGFA 220858 P++ T E RR IIPF H V + D LED L+ E IL W ++GA +EG Sbjct: 616 PKIYGTDEGIWRRLVIIPFTHTVKKENVDKKLEDKLKAESMGILKWAIEGAMMWQSEGL- 674 Query: 220859 SMPGAVTKATNDYFAENDTFALWAGERLLLHKDYSVPAGVAYANYTRWF-EGGGYEG--R 221029 + P + A N+Y E D + E + + Y V Y W E +EG Sbjct: 675 NPPDVIQNAGNEYRKEMDVIEAFIDECCVTNDSYKVKLPTYLDAYKNWANETNNWEGMNN 734 Query: 221030 PVSSREFKMRMEDMGATHDRDNRGRLYRGAKLDTS 221134 +E R E R N G Y G L + Sbjct: 735 TKFGKEITKRFE-----RKRLNTGNYYLGIDLQVN 764 >ref|NP_511033.1|primase Length = 757 Score = 153 bits (386), Expect = 9e-36 Identities = 100/354 (28%), Positives = 166/354 (46%), Gaps = 2/354 (0%) Frame = +2 Query: 220073 EPFDANPWLLATPAGVVDLRDGSSRAARPEDMMTRVTGCAPDFGGDCPRWRAFLGACIHG 220252 E FD + L T G ++L++G + M T+++ D P W+ FL G Sbjct: 411 EEFDRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQEFLKDIFAG 470 Query: 220253 FDEYGEPRSAPPGDEMVRFLQRMCGYFLTGSTRFEFVFLLFGGGANGKSTFLRVLREILG 220432 E++ ++Q+ GY L+GST + +F+LFG G NGKS FL ++ +I G Sbjct: 471 ------------DKELINYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFG 518 Query: 220433 DYFVSVAVETFLQSAHDQHPTG-MAHIEGARLAACGELPDNRSWNSQRVKDISSGEKISA 220609 Y ++ +T + + +A + GAR E + + VK ++ G+K++A Sbjct: 519 SYATNIQPQTIMVKQQSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTA 578 Query: 220610 RHMRQDFYDFVPVCKLLFVGNHRPRVRQTGEAEKRRFRIIPFVHKVPENRRDSTLEDALR 220789 RH+ + ++F P K+ NH+P +R + RR ++PF K+P+ + D L+ LR Sbjct: 579 RHLYKAEFEFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLR 638 Query: 220790 EEYPAILAWMLDGAKAVIAEGFASMPGAVTKATNDYFAENDTFALWAGERLLLHKDYSVP 220969 E IL W ++G EG MPGAV A+++Y +E D + + + + V Sbjct: 639 RELTGILNWAVEGFLKWQREGL-GMPGAVENASSEYKSEMDVITAFIEDCCDVREGEKVN 697 Query: 220970 AGVAYANYTRWF-EGGGYEGRPVSSREFKMRMEDMGATHDRDNRGRLYRGAKLD 221128 A Y Y W E G Y +SS +F + M T + +Y G L+ Sbjct: 698 AKKMYETYHEWAKENGQY---LMSSTKFGKEI-GMKFTKKKTKTANVYEGITLN 747 >ref|NP_958698.1|Bbp29 Length = 854 Score = 121 bits (303), Expect = 4e-26 Identities = 112/448 (25%), Positives = 177/448 (39%), Gaps = 34/448 (7%) Frame = +2 Query: 219899 WFRWEDTHWKQDEGARVTREMIRRTVR-------------------KMCRGEPRWLTARV 220021 WF W +W++ G + + + T+R K C R A + Sbjct: 424 WFTWTGIYWRRAAGVEL-EHLAKETIRALPDEAKAIESDAERAEFFKFCAVSQR---AVM 479 Query: 220022 VDAIEKLARTDERTCPS-EPFDANPWLLATPAGVVDLRDGSSRAARPEDMMTRVTGCAPD 220198 V + LA++D R D P LL GVVDL G +T +T D Sbjct: 480 VRNMVSLAQSDPRVVVGVADLDKAPHLLGVGNGVVDLTTGKLLPPDQAYRVTTITATEYD 539 Query: 220199 FGGDCPRWRAFLGACIHGFDEYGEPRSAPPGDEMVRFLQRMCGYFLTGSTRFEFVFLLFG 220378 CP + + G +M+ F QR+ GY L + + + +G Sbjct: 540 AAATCPLFEQTVADVFFG------------DADMIGFFQRLIGYSLMAQPTEDVLAIPYG 587 Query: 220379 GGANGKSTFLRVLREILGDYFVSVAVETFLQSAHDQHPTGMA-----HIEGARLAACGEL 220543 G+NGKST L +R++LG++ + +TFL S G A + GAR E Sbjct: 588 SGSNGKSTVLGAIRDVLGEHAKMASADTFLSSGAAGATAGSAREDVLRLRGARFVYVSEP 647 Query: 220544 PDNRSWNSQRVKDISSGEKISARHM-RQDFYDFVPVCKLLFVGNHRPRVRQTGEAEKRRF 220720 + +K ++ GE + AR + + + P NHRP V+ A RR Sbjct: 648 DEGSELREGLIKSMTGGEPLPARGLYSKTTVEVAPTWVAFMPTNHRPIVKGDDHAIWRRL 707 Query: 220721 RIIPFVHKVPEN---RRDSTLEDALREEYPAILAWMLDGAKAVIAEGFASMPGAVTKATN 220891 +PF ++ +D + L E ILAW + GA A +G PGAV +A + Sbjct: 708 LPVPFTRNFDQDLTLTKDPDRAEKLAAEAAGILAWCVRGALAYQRQGLRP-PGAVRQARD 766 Query: 220892 DYFAENDTFALWAGERLLLHKDYSVPAGVAYANYTRWFEGGGYEGRPVSSREFKMRMEDM 221071 DY ++ D A W E + Y +A++ + + G S++ R++ Sbjct: 767 DYKSDMDLLAEWLDECCEVGPAYVESNARLWASWEAFAKARGELRFIASAKSLGRRLDSK 826 Query: 221072 G-----ATHDRDNRGRLYRGAKLDTSGD 221140 G +TH +GR RG ++ GD Sbjct: 827 GFSSIDSTHGIRGKGR--RGIRVRRVGD 852 >ref|NP_996591.1|primase Length = 854 Score = 121 bits (303), Expect = 4e-26 Identities = 112/448 (25%), Positives = 177/448 (39%), Gaps = 34/448 (7%) Frame = +2 Query: 219899 WFRWEDTHWKQDEGARVTREMIRRTVR-------------------KMCRGEPRWLTARV 220021 WF W +W++ G + + + T+R K C R A + Sbjct: 424 WFTWTGIYWRRAAGVEL-EHLAKETIRALPDEAKAIESDAERAEFFKFCAVSQR---AVM 479 Query: 220022 VDAIEKLARTDERTCPS-EPFDANPWLLATPAGVVDLRDGSSRAARPEDMMTRVTGCAPD 220198 V + LA++D R D P LL GVVDL G +T +T D Sbjct: 480 VRNMVSLAQSDPRVVVGVADLDKAPHLLGVGNGVVDLTTGKLLPPDQAYRVTTITATEYD 539 Query: 220199 FGGDCPRWRAFLGACIHGFDEYGEPRSAPPGDEMVRFLQRMCGYFLTGSTRFEFVFLLFG 220378 CP + + G +M+ F QR+ GY L + + + +G Sbjct: 540 AAATCPLFEQTVADVFFG------------DADMIGFFQRLIGYSLMAQPTEDVLAIPYG 587 Query: 220379 GGANGKSTFLRVLREILGDYFVSVAVETFLQSAHDQHPTGMA-----HIEGARLAACGEL 220543 G+NGKST L +R++LG++ + +TFL S G A + GAR E Sbjct: 588 SGSNGKSTVLGAIRDVLGEHAKMASADTFLSSGAAGATAGSAREDVLRLRGARFVYVSEP 647 Query: 220544 PDNRSWNSQRVKDISSGEKISARHM-RQDFYDFVPVCKLLFVGNHRPRVRQTGEAEKRRF 220720 + +K ++ GE + AR + + + P NHRP V+ A RR Sbjct: 648 DEGSELREGLIKSMTGGEPLPARGLYSKTTVEVAPTWVAFMPTNHRPIVKGDDHAIWRRL 707 Query: 220721 RIIPFVHKVPEN---RRDSTLEDALREEYPAILAWMLDGAKAVIAEGFASMPGAVTKATN 220891 +PF ++ +D + L E ILAW + GA A +G PGAV +A + Sbjct: 708 LPVPFTRNFDQDLTLTKDPDRAEKLAAEAAGILAWCVRGALAYQRQGLRP-PGAVRQARD 766 Query: 220892 DYFAENDTFALWAGERLLLHKDYSVPAGVAYANYTRWFEGGGYEGRPVSSREFKMRMEDM 221071 DY ++ D A W E + Y +A++ + + G S++ R++ Sbjct: 767 DYKSDMDLLAEWLDECCEVGPAYVESNARLWASWEAFAKARGELRFIASAKSLGRRLDSK 826 Query: 221072 G-----ATHDRDNRGRLYRGAKLDTSGD 221140 G +TH +GR RG ++ GD Sbjct: 827 GFSSIDSTHGIRGKGR--RGIRVRRVGD 852 >ref|NP_996639.1|primase Length = 854 Score = 121 bits (303), Expect = 4e-26 Identities = 112/448 (25%), Positives = 177/448 (39%), Gaps = 34/448 (7%) Frame = +2 Query: 219899 WFRWEDTHWKQDEGARVTREMIRRTVR-------------------KMCRGEPRWLTARV 220021 WF W +W++ G + + + T+R K C R A + Sbjct: 424 WFTWTGIYWRRAAGVEL-EHLAKETIRALPDEAKAIESDAERAEFFKFCAVSQR---AVM 479 Query: 220022 VDAIEKLARTDERTCPS-EPFDANPWLLATPAGVVDLRDGSSRAARPEDMMTRVTGCAPD 220198 V + LA++D R D P LL GVVDL G +T +T D Sbjct: 480 VRNMVSLAQSDPRVVVGVADLDKAPHLLGVGNGVVDLTTGKLLPPDQAYRVTTITATEYD 539 Query: 220199 FGGDCPRWRAFLGACIHGFDEYGEPRSAPPGDEMVRFLQRMCGYFLTGSTRFEFVFLLFG 220378 CP + + G +M+ F QR+ GY L + + + +G Sbjct: 540 AAATCPLFEQTVADVFFG------------DADMIGFFQRLIGYSLMAQPTEDVLAIPYG 587 Query: 220379 GGANGKSTFLRVLREILGDYFVSVAVETFLQSAHDQHPTGMA-----HIEGARLAACGEL 220543 G+NGKST L +R++LG++ + +TFL S G A + GAR E Sbjct: 588 SGSNGKSTVLGAIRDVLGEHAKMASADTFLSSGAAGATAGSAREDVLRLRGARFVYVSEP 647 Query: 220544 PDNRSWNSQRVKDISSGEKISARHM-RQDFYDFVPVCKLLFVGNHRPRVRQTGEAEKRRF 220720 + +K ++ GE + AR + + + P NHRP V+ A RR Sbjct: 648 DEGSELREGLIKSMTGGEPLPARGLYSKTTVEVAPTWVAFMPTNHRPIVKGDDHAIWRRL 707 Query: 220721 RIIPFVHKVPEN---RRDSTLEDALREEYPAILAWMLDGAKAVIAEGFASMPGAVTKATN 220891 +PF ++ +D + L E ILAW + GA A +G PGAV +A + Sbjct: 708 LPVPFTRNFDQDLTLTKDPDRAEKLAAEAAGILAWCVRGALAYQRQGLRP-PGAVRQARD 766 Query: 220892 DYFAENDTFALWAGERLLLHKDYSVPAGVAYANYTRWFEGGGYEGRPVSSREFKMRMEDM 221071 DY ++ D A W E + Y +A++ + + G S++ R++ Sbjct: 767 DYKSDMDLLAEWLDECCEVGPAYVESNARLWASWEAFAKARGELRFIASAKSLGRRLDSK 826 Query: 221072 G-----ATHDRDNRGRLYRGAKLDTSGD 221140 G +TH +GR RG ++ GD Sbjct: 827 GFSSIDSTHGIRGKGR--RGIRVRRVGD 852 >ref|YP_024966.1|putative primase Length = 888 Score = 115 bits (288), Expect = 2e-24 Identities = 121/447 (27%), Positives = 185/447 (41%), Gaps = 30/447 (6%) Frame = +2 Query: 219899 WFRWEDTHWK---QDEGARVTREMIRRTV---RKMCRGEPR---------WLTARVVDAI 220033 W+ W +W+ Q E + ++ IR V ++ E R A +V + Sbjct: 452 WYVWTGVYWRRAVQVELENMAKDTIRALVDEAEELQTAEERIEFFKFCAACQKAAMVSNM 511 Query: 220034 EKLARTDERTC-PSEPFDANPWLLATPAGVVDLRDGSSRAARPEDMMTRVTGCAPDFGGD 220210 +LA +D R P D + LL G VDLR G+ E +T VT D Sbjct: 512 IRLAASDPRVVVPVTELDKHTHLLGVGNGAVDLRTGALLPPGKEHRITVVTPVEYD---- 567 Query: 220211 CPRWRAFLGACIHGFDEYGEPRSAPPGD-EMVRFLQRMCGYFLTGSTRFEFVFLLFGGGA 220387 PR L F++ R D E V F QR+ GY L G+ R + + + G G+ Sbjct: 568 -PRAAGKL------FEQ--TVRDVFSDDAEQVEFFQRLVGYALLGTPREDLLIIPHGTGS 618 Query: 220388 NGKSTFLRVLREILGDYFVSVAVETFLQ------SAHDQHPTGMAHIEGARLAACGELPD 220549 NGKST L +RE LG + S + ETFL +A + + GAR GE + Sbjct: 619 NGKSTVLGKIREALGAHAKSASAETFLSASGGPGAAAGAAREDLLRLRGARFVYVGEPDE 678 Query: 220550 NRSWNSQRVKDISSGEKISARHM-RQDFYDFVPVCKLLFVGNHRPRVRQTGEAEKRRFRI 220726 +K ++ G+ I AR + + + VP NH+P V+ A RR + Sbjct: 679 GSELREGLIKAMTGGDPIPARGLWSKTTIEVVPTWVAFMPTNHKPIVKGDDHAIWRRLML 738 Query: 220727 IPF---VHKVPENRRDSTLEDALREEYPAILAWMLDGAKAVIAEGFASMPGAVTKATNDY 220897 +PF K P ++D + L E P +LAW + GA A G +V A + Y Sbjct: 739 VPFERNFDKDPTIKKDPARAERLAAELPGVLAWCVRGALAYQQHGLRP-TSSVAAARDAY 797 Query: 220898 FAENDTFALWAGERLLLHKDYSVPAGVAYANYTRWFEGGGYEGRPVSSREFKMRMEDMGA 221077 A+ D A W ER + +D + + ++ + E G +SR R+ G Sbjct: 798 KADMDLLADWIDERCRVGRDAASTNEDLWRSWRAFAEQRGELRFIANSRALARRIAARGF 857 Query: 221078 THDRDN---RGRLYRGAKLDTSGDLSG 221149 + ++ RGR + G ++ D G Sbjct: 858 SQIKNTYGIRGRGFAGICVNDEVDFEG 884 >ref|YP_006919.1|putative RNaseH ribonuclease Length = 158 Score = 102 bits (254), Expect = 2e-20 Identities = 56/143 (39%), Positives = 79/143 (55%), Gaps = 11/143 (7%) Frame = +3 Query: 263766 IYTDGACKGNPGPGGWGALLRYGSQEKEL---FGGEPNTTNNRMELMGVIAALE-ALKRP 263933 +YTDGACK NPGPG WG ++ Y + L G P TTNN MEL ++ AL ++K+ Sbjct: 6 VYTDGACKSNPGPGAWGFIV-YDDNDDRLGSKSGYSPKTTNNEMELTAIVEALRWSVKKD 64 Query: 263934 CR-VIVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWKRLDALVAQH------E 264092 R ++++TDS Y + G+ W+ W++KGW A N +LW+ L Q+ Sbjct: 65 NRPIVIYTDSAYCKNGMESWMFSWQRKGWKKADGEVPLNLELWQEAFKLTQQYINFHNTN 124 Query: 264093 IEWRWVKGHAGHPENERADALAN 264161 + VKGH+G NE DAL N Sbjct: 125 PTFIKVKGHSGISGNEAVDALCN 147 >ref|YP_024889.1|putative primase Length = 919 Score = 100 bits (248), Expect = 9e-20 Identities = 99/471 (21%), Positives = 194/471 (41%), Gaps = 43/471 (9%) Frame = +2 Query: 219860 YQGRLLFETLRGKWFRWEDTHWKQ------------------DEGARVTREMIRRTVRKM 219985 Y L++ + +W++W+ W E E +R + + Sbjct: 471 YGDTLMYVSEIEQWYQWDGMRWNAATPEQLQFLATQTIYSIAQEARDEENEEVRVRLAQW 530 Query: 219986 CRGEPRWLTARVVDAIEKLARTDERT-CPSEPFDANPWLLATPAGVVDLRDGSSRAARPE 220162 R + TA V + + AR + R + DA+ + P ++DL+ G++ A Sbjct: 531 ARDSQK--TAMVKNIVIG-ARAEPRVFARAANLDADVRYIGAPNCIIDLQTGAALAPDRN 587 Query: 220163 DMMTRVTGCAPDFGGDCPRWRAFLGACIHGFDEYGEPRSAPPGDEMVRFLQRMCGYFLTG 220342 +T+ T + D P ++ + FD E++ F +R+ GY L G Sbjct: 588 ARITQYTAVQYNPAADAPCFKQTIREAF--FDNI----------ELIVFFKRLMGYALLG 635 Query: 220343 STRFEFVFLLFGGGANGKSTFLRVLREILGDYFVSVAVETFLQSAHDQHPTG------MA 220504 + + ++ + +G GANGKST + ++ +LGDY + + +TF S + + + Sbjct: 636 NPKQSWLVIPYGHGANGKSTIMNAIQRVLGDYCRTASSDTFTSSEASRSSSAGGPREDLV 695 Query: 220505 HIEGARLAACGELPDNRSWNSQRVKDISSGEKISARHMR-QDFYDFVPVCKLLFVGNHRP 220681 + R+ E+ +N VK ++ + I AR ++ + ++ P + NH+P Sbjct: 696 RLRSTRMLLISEVEENSHLREAIVKSLTGDDTIVARGVQAKASVEYKPRFVPIMSTNHKP 755 Query: 220682 RVRQTGEAEKRRFRIIPF---VHKVPENRRDSTLEDALREEYPAILAWMLDGAKAVIAEG 220852 ++ + RR +IPF + P D + + E +L W+++GA G Sbjct: 756 VIKGSDNGIWRRIMMIPFERNFREDPNIPEDVDRPEKIAAESEGVLRWLVEGAVEYQQFG 815 Query: 220853 FASMPGAVTKATNDYFAENDTFALWAGERLLLHKD--------------YSVPAGVAYAN 220990 ++P + +AT++Y + D + W RL D Y+ P G+ Sbjct: 816 -VTVPHIIREATDEYRKDMDLLSGWIESRLEFDPDAFVTPQDLFTSWQSYATPIGL---- 870 Query: 220991 YTRWFEGGGYEGRPVSSREFKMRMEDMGATHDRDNRGRLYRGAKLDTSGDL 221143 R+ GR ++ R+ R +++G RGR + G +L T+ ++ Sbjct: 871 -MRFVSTPVALGRKLAGRKGFKRAQNIGGM-----RGRCFVGVRLKTAAEV 915 >ref|NP_861819.1|NudE nudix hydrolase Length = 152 Score = 86.3 bits (212), Expect = 1e-15 Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 10/155 (6%) Frame = -1 Query: 128659 MMKRGGAPRTVSCGVVILDTAGRVFLAHATDTT-------HWDIPKGQGEPGETPADAAL 128501 MM + + +S G++ L +F+ T + WDIPKG+ EPGE+P +AA+ Sbjct: 1 MMSKKNKVKELSAGIIFLTEDKELFMGRVTGSRPKGALAHRWDIPKGRVEPGESPIEAAI 60 Query: 128500 RELLEETGI-EFAPARLLDLGRFAYRHDKDLHLF--AVQVAEGEIDPARCTCTSLFPSRR 128330 RE EETG ++ PA L DLG Y +K++HLF + V + + C FP Sbjct: 61 RECEEETGFTQYDPAFLKDLGEHHYSDNKNIHLFLYTIPVEHEQFRNSVCNSYHTFP--- 117 Query: 128329 DGSMIPEMDAYRWTVPGDVDTYASRSLARLFRTKL 128225 DG IPE DA+ P + +SL ++ T L Sbjct: 118 DGRQIPEFDAFALIKPSQWEYVMGKSLYKVLTTLL 152 >ref|NP_899299.1|conserved hypothetical protein Length = 242 Score = 79.7 bits (195), Expect = 1e-13 Identities = 70/259 (27%), Positives = 113/259 (43%), Gaps = 5/259 (1%) Frame = +2 Query: 70064 VKVRVLSDLHLENNLPDAIPHADAD---LVVLAGDIHNHAEGLRWAAETFDPAVPVVYVP 70234 +KV SD+H + + +A+ D ++V+AGDI++ +R D V+ VP Sbjct: 4 LKVYYCSDIHNDYHDENALERITGDKDAVLVVAGDINSKGRTVRDLEAVADRWRAVIAVP 63 Query: 70235 GNHEYYDGEFGALETAMRDAAHALDNVHYL-NNGVYVDPAQRFRVLGTTLWADFSLFGRD 70411 GNH+++ G ++DNVH L + V +D GTTLW + + + Sbjct: 64 GNHDWW----GLAIHERHKFETSVDNVHVLLEDTVQIDDVT---FCGTTLWHEVNDW--- 113 Query: 70412 EASVARAIDAALRVMLDFKGLIQVTWPHDAALHTAAGAPE-RDFAPADAIALHLQGRAWL 70588 F+G W + P+ R D ALH Q ++ Sbjct: 114 -----------------FEGQ---RWKENMNDRRKIRGPQWRPLYGEDVHALHCQSVKFI 153 Query: 70589 ETQLAAPFAGKTIVVTHHAPHRRSLAERYAEDLASAGFVTDMAELVRPPVDLWLHGHTHT 70768 E GK +++THHAP +S++ YA ++ + TD+ L+ + +HGH H Sbjct: 154 EK--CREIEGKKVLITHHAPSLKSISSYYAYSSTNSFYCTDLEHLLE-GFNFAIHGHVHQ 210 Query: 70769 SFDYVADGGTRVVCNPRGY 70825 FDY + V+CNPR Y Sbjct: 211 EFDYHVN-DCNVLCNPRAY 228 >ref|NP_795676.1|putative DNA primase Length = 794 Score = 74.3 bits (181), Expect = 5e-12 Identities = 73/334 (21%), Positives = 134/334 (40%), Gaps = 4/334 (1%) Frame = +2 Query: 220082 DANPWLLATPAGVVDLRDGSSRAARPEDMMTRVTG-CAPDFGGDCPRWRAFLGACIHGFD 220258 D N +LA GV DLRD S + ++ R + D C + FL + Sbjct: 460 DLNKIVLAN--GVYDLRDNSFKTKFDPEVHARSSHPVVYDPEATCETFEGFLRETV---- 513 Query: 220259 EYGEPRSAPPGDEMVRFLQRMCGYFLTGSTRFEFVFLLFGGGANGKSTFLRVLREILG-D 220435 G E + F+ GY + + ++G G GKST + +LRE++G D Sbjct: 514 ----------GAENIDFIFEWFGYNFYREYTIQKMLFIYGSGGTGKSTLINILREMIGAD 563 Query: 220436 YFVSVAVETFLQSAHDQHPTGMAHIEGARLAACGELPDNRSW--NSQRVKDISSGEKISA 220609 + +V ++ +Q A I R A + + + +K ++ + I A Sbjct: 564 NYSAVTLQYLMQER-------FAKIGLYRKTANFDTDAKPQYLADGATLKMLTGEDTIHA 616 Query: 220610 RHMRQDFYDFVPVCKLLFVGNHRPRVRQTGEAEKRRFRIIPFVHKVPENRRDSTLEDALR 220789 ++ +F KL F N P +R KRR I+ + + + D + Sbjct: 617 DRKNKEPINFYNYAKLSFAMNELPPMRDFSGGLKRRMMILEMDKVLTQEVKAKYPLDKIM 676 Query: 220790 EEYPAILAWMLDGAKAVIAEGFASMPGAVTKATNDYFAENDTFALWAGERLLLHKDYSVP 220969 E P I ++G + +++ S+ ++ + + ND A++ + L +D+ VP Sbjct: 677 SEVPGIFNRAMEGLRKALSKRDFSISASMRSSVEKWEKGNDVVAMFLEDECDLSEDFKVP 736 Query: 220970 AGVAYANYTRWFEGGGYEGRPVSSREFKMRMEDM 221071 Y Y + + GY +P++ F RM ++ Sbjct: 737 VRDVYPAYKFYCQDSGY--KPLARNSFTQRMNEL 768 >ref|NP_049737.1|NudE nudix hydrolase Length = 151 Score = 73.9 bits (180), Expect = 7e-12 Identities = 48/122 (39%), Positives = 63/122 (51%), Gaps = 9/122 (7%) Frame = -1 Query: 128635 RTVSCGVVILDTAGRVFLAHATDTT-------HWDIPKGQGEPGETPA-DAALRELLEET 128480 +T+S G++ + +F+ T + WDIPKG+ E + A DAA RE LEET Sbjct: 7 KTLSAGIIFMTEDKDLFMGRVTGSRKTGMMAHRWDIPKGRVENSDLSALDAARRECLEET 66 Query: 128479 GIE-FAPARLLDLGRFAYRHDKDLHLFAVQVAEGEIDPARCTCTSLFPSRRDGSMIPEMD 128303 G + P L DLG F Y +KDL LF + C C S F +DG MIPEMD Sbjct: 67 GFSNYNPDLLEDLGVFKYSSNKDLQLFYYTIPVEHEMFRNCRCESYF-ENKDGVMIPEMD 125 Query: 128302 AY 128297 A+ Sbjct: 126 AF 127 >ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family Length = 92 Score = 72.8 bits (177), Expect = 1e-11 Identities = 35/90 (38%), Positives = 55/90 (61%) Frame = -3 Query: 41513 LTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 41334 + K EL + + G++K+E VE F+ I +AL++GE V + GFG F++R++ R G Sbjct: 1 MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60 Query: 41333 RNPKTGEAIPIAARRVVTFHASQKLKALVE 41244 RNP+TGE I I A + F ++ LK V+ Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALKDAVK 90 >ref|NP_803721.1|ORF155 Length = 482 Score = 72.4 bits (176), Expect = 2e-11 Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 39/178 (21%) Frame = +3 Query: 263751 TDTIDIYTDGACKGNPGPGGWG------------------------ALLRYGSQEK---- 263846 +D + +YTDG+ + G GWG L G+ E Sbjct: 2 SDGMVLYTDGSFR--QGKAGWGIHGYTYENVAMKSKAATKQQPTAKGYLDVGADETCTVL 59 Query: 263847 ---ELFGGEPNT-TNNRMELMGVIAALEALKRPC--RVIVHTDSQYVQKGISEWIHGWKK 264008 + FG N TNN EL I A + R+ + DS+YV+KG++ ++ W K Sbjct: 60 NYIDAFGSVTNNPTNNTGELTAAIEAFKIAHEADAPRLTMLMDSEYVRKGMTAYLPKWIK 119 Query: 264009 KGWVTAAKTPVKNADLWKRLDALVAQHE-----IEWRWVKGHAGHPENERADALANRG 264167 W+ + TPV N DLWK++ L A+ E + +WV+GH G NE+ADA A G Sbjct: 120 SNWIKSDGTPVANQDLWKQMVELKAKWEETNKPLSIQWVRGHNGDIGNEKADANAKLG 177 >ref|NP_817947.1|gp96 Length = 566 Score = 70.5 bits (171), Expect = 7e-11 Identities = 62/247 (25%), Positives = 107/247 (43%), Gaps = 5/247 (2%) Frame = -1 Query: 250348 FSDVAGCDEAKE-EVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 250172 F +V G D KE + + + + + + + ++P+G +L+G G GKTL +A+ E Sbjct: 281 FDNVGGLDVFKEWAIRQKIAYSPEARAYNL---KLPKGAMLIGVSGCGKTLSCQALGAEW 337 Query: 250171 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVXXXXXXXXXXGND 249992 P + + +VG +R+R +F + IV+IDE++ G Sbjct: 338 NWPVVRLDINALKGKYVGESESRLRGIFSKIDALGQVIVYIDEVEKALEGAVSGSADGGV 397 Query: 249991 EREQTLNQMLVEMDGFEANSGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIRGREQ 249812 + L +L M + V++ A N L LR GRFD ++ LP R Sbjct: 398 SAD-ALGAILTWMQDRAGQAFVMMTA--NDPSKLPPEFLRKGRFDEVWWIDLPTRAERMS 454 Query: 249811 IMRVHLR---KVPIANDVDAAVIARGTPGFSGADLANLVNEAALF-AARRGKRIVEMQDF 249644 + LR + +D +A T GF+GA++A + A+F A G R + +D Sbjct: 455 VAAATLRSNGRDAETLGIDLGAVADATNGFTGAEIAACIEHDAMFNAFADGGREITTEDI 514 Query: 249643 EDAKDKI 249623 A ++ Sbjct: 515 LHAAGEV 521 >ref|NP_818646.1|gp108 Length = 916 Score = 68.6 bits (166), Expect = 3e-10 Identities = 86/357 (24%), Positives = 145/357 (40%), Gaps = 26/357 (7%) Frame = +2 Query: 220082 DANPWLLATPAGVVDLRDGSSRA--ARPEDMMTRVTGCAPDFGGDCPR-----WRAFLGA 220240 DA P LLA GVV+L +R A PED +T TG + P W+ +L Sbjct: 531 DARPDLLAVANGVVELNPTGARLRDAEPEDYLTLNTGVPWLHPKEIPNTGQKLWQEYLDK 590 Query: 220241 CIHGFDEYGEPRSAPPGDEMVRFLQRMCGYFLTGSTRFEFVFLLFGGGANGKSTFLRVLR 220420 + P R +Q + G+ L GS + + + G GKS + ++ Sbjct: 591 FL-------------PDPSYRRDVQIILGHALIGSNPHKKLIIFKGAANTGKSVMITMIN 637 Query: 220421 EILGDYFVSVAVETFLQSAHDQHPTGMAHIEGARLAACGELP-DNRS-WNSQRVKDISSG 220594 E+LGDY + L + H +P +A R+ + EL D R+ ++K + Sbjct: 638 EVLGDY--AKTTNRSLFTYHKLNPV-LAQALPKRVVSIVELSRDKRNPLTVDQMKTATGN 694 Query: 220595 EKISAR-HMRQDFYDFVPVCKLLFVGNHRPRVRQTGEAEKRRFRIIPFVHKVPENRRDST 220771 + I A + + VP+ + V N P + +A + R R+I F + V +N D+ Sbjct: 695 DYIEAELKGKNATINRVPMFLPIMVTNTVPEIEGHDKALRERLRVISF-NVVEQNPDDTI 753 Query: 220772 LEDALREEYPAILAWMLDGAKAVIAEGFASMPGAVTKATNDYFAEN-DTFALWAGERLLL 220948 RE A+L W+++G +A D FA + D +L+A E L Sbjct: 754 AARMRRESRTAVLNWLIEGYNLYCQSERKFPENDRMRADTDEFASDMDDISLFAKECLKP 813 Query: 220949 HKDYSVPA--------------GVAYANYTRW-FEGGGYEGRPVSSREFKMRMEDMG 221074 + P+ + Y +W F+ E ++S +F R++++G Sbjct: 814 APNMDKPSINWARDQVEWCTSRAAVWTRYEQWLFDNHIPEKHKLTSPQFTRRLKELG 870 >ref|NP_945089.1|gp58 Length = 297 Score = 65.5 bits (158), Expect = 2e-09 Identities = 66/234 (28%), Positives = 97/234 (41%), Gaps = 14/234 (5%) Frame = +2 Query: 119879 LAALAIFRAVVRENGVTRAAAKLNRVQSNVTTRIKQLEEELGAALFVRDGRRLVLTPAGH 120058 L L F A R TRAA +LN Q V+ ++ +LE LG LFVRD + L LT AG Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 120059 TLLPYAERLLTLADEARDA----VREDTPRGRLRLGTMESTAASRLPTLLARYHHAWPDV 120226 YA+R+ + + +A ++E TP L + TA L +A + P+V Sbjct: 69 ---QYADRVHAILADCVEATALVMKEQTPHS-LTIACASGTATLFLADRIAEFSAEHPEV 124 Query: 120227 SLELLTGTTGYLIDRVRDFEIDAALFARPPEPDTLPDTFETVPIFREDL------VLLTP 120388 S+ +L G +F+I P P I ED+ L Sbjct: 125 SVRILV-REGVFNLNAAEFDIGVYYIRDVPPPG-----IAGTAIVAEDVHAYCAPTFLAG 178 Query: 120389 RGHPPVRTPRDVILPTLIAFE----RGCAYRKYVERWYAAHGVKPARVLELGSY 120538 R P P+D++ TL+ E + +R + G +PAR + SY Sbjct: 179 RRVP----PQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSY 228 Score = 64.3 bits (155), Expect = 5e-09 Identities = 63/265 (23%), Positives = 111/265 (41%), Gaps = 5/265 (1%) Frame = +2 Query: 138224 LTMQHLPDLEAWAIFARVAETGSFAKAADLLGISQPTVSKAIARLEKRLGAMLLYRTSRK 138403 + +Q LP L+ F A G+F +AA+ L ++Q VSK + +LE LG L R ++ Sbjct: 1 MKIQPLPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKA 60 Query: 138404 LSLTPTGXXXXXXXXXXXXXXXXXXNEASAQALE---PHGLVRVNAPMSFGLHHLSPVLP 138574 L LT G EA+A ++ PH L A + L L+ + Sbjct: 61 LHLTRAGQQYADRVHAILADCV----EATALVMKEQTPHSLTIACASGTATL-FLADRIA 115 Query: 138575 AFLERYPRVDIDLVLTDHIVDIVSGGFDVAI-RIAELSDSTLRSRRLCAVRRPLVASPAY 138751 F +P V + +++ + + ++ + FD+ + I ++ + + A +P + Sbjct: 116 EFSAEHPEVSVRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTF 175 Query: 138752 LDRRGRPTHPRDLEQHVCLTYTNLPTPEY-WRFRHPASGDEVGVSVHGRIRTNNADVILP 138928 L GR P+DL + L WR + E+G I N+ V+L Sbjct: 176 L--AGRRVPPQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQ 233 Query: 138929 ALVGGHGLALQPEFLVWDELQRGAL 139003 + GHG L + ++ ++ G L Sbjct: 234 LALHGHGAILGWKHMITPLVESGKL 258 Score = 57.0 bits (136), Expect = 8e-07 Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 1/189 (0%) Frame = -3 Query: 72155 LQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHXXXXXXXXXXXXXXXTEAGE 71976 LQ + F G+FT AA+++N S+ V LE T AG+ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 71975 RYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRERYPDVHV 71796 +Y R ILA D EA A + L + C + +L IA + +P+V V Sbjct: 69 QYADRVHAILA--DCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 71795 ELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRL-GESYSVVCASPGYVESHGVPQRP 71619 + + + + +L +D+ + RD+P G+ + E CA P ++ VP P Sbjct: 127 RILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCA-PTFLAGRRVP--P 183 Query: 71618 ADLAQHVCL 71592 DL + L Sbjct: 184 QDLMEATLL 192 Score = 57.0 bits (136), Expect = 8e-07 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 2/125 (1%) Frame = +3 Query: 172437 FVTVAHAGNFTRAAARLHLSQPALTVQIRRLEDIVGARLFDRNSRSVALTQTGRELLPLL 172616 F A GNFTRAA L+++Q A++ Q+ +LE +G LF R+++++ LT+ G++ + Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRV 74 Query: 172617 QRSLDDMERVLRDARALGEGASGTVRLACLPTFASSVLPELIQSFRRDVPRAGFEI--RD 172790 L D V A + E ++ +AC A+ L + I F + P I R+ Sbjct: 75 HAILADC--VEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILVRE 132 Query: 172791 GVASL 172805 GV +L Sbjct: 133 GVFNL 137 Score = 52.0 bits (123), Expect = 3e-05 Identities = 35/131 (26%), Positives = 55/131 (41%) Frame = +2 Query: 174629 AVAREGTFAAAGNRIGLTQAAVSAQMQRLEAELGFALFDRQGRSARLNERGHHVLDQAQA 174808 A AR G F A + + Q AVS Q+ +LE LG LF R ++ L G D+ A Sbjct: 17 AAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHA 76 Query: 174809 LIGLYENLSSTAPGSPAAVRVTIGAIASVQSALLPAALADFHRRQPACRTRVIPGLSIEL 174988 ++ ++ +TI + + L +A+F P R+ L E Sbjct: 77 ILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRI---LVREG 133 Query: 174989 VNRVDAGEIDM 175021 V ++A E D+ Sbjct: 134 VFNLNAAEFDI 144 Score = 38.5 bits (88), Expect = 0.31 Identities = 23/59 (38%), Positives = 33/59 (55%) Frame = -2 Query: 31344 LRQLRVFTEVARLKSFSRAGDEIGLTQSAVSRCVRELEAELGLKLIDRTTRDVQLTDVG 31168 L+ L F AR +F+RA +E+ + Q AVS+ V +LE LG L R + + LT G Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAG 67 Score = 38.5 bits (88), Expect = 0.31 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 2/144 (1%) Frame = -3 Query: 95231 AAAGSFTAAAQRLGISKAAMSQRIADLEKAAGVPXXXXXXXXXXXTDAGQTLVDSTRDAF 95052 A G+FT AA+ L +++ A+S+++ LE G T AGQ D Sbjct: 19 ARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHAIL 78 Query: 95051 ESIGQHFARVKDLAGEPRGLLRVTVPVALGRQQV--VPHLPDFLRQHPGVQIELDLSDRL 94878 + A V P L T+ A G + + +F +HP V + + + + + Sbjct: 79 ADCVEATALVMK-EQTPHSL---TIACASGTATLFLADRIAEFSAEHPEVSVRILVREGV 134 Query: 94877 HSLTQEGFDLAIRHTTTAPQTHVA 94806 +L FD+ + + P +A Sbjct: 135 FNLNAAEFDIGVYYIRDVPPPGIA 158 >ref|NP_061531.1|integrase Length = 369 Score = 65.1 bits (157), Expect = 3e-09 Identities = 60/236 (25%), Positives = 95/236 (40%), Gaps = 5/236 (2%) Frame = +1 Query: 217762 PTNAEQSYRKLRALIRWCNDRPEYAGIIPPNAYNARAVRSAVPRTKAKDDCLQREQLSAW 217941 P + L A I CN E+A PN R +R A + +D L R ++ A Sbjct: 119 PATINRELAALSAAINHCNTELEWA---LPNPVKGRKMREA----EGRDRWLTRAEVEAL 171 Query: 217942 FDAVR--KLGNPVIATYLQALLITGARREEIAALRWTDVDFQWRSLSIA---DKVEGSRV 218106 A R K G P++ +++ + TG RREE+ L W VDF R + + K R Sbjct: 172 CRAARGQKFG-PMLEDFIRLAVNTGCRREEMLGLEWRRVDFANRLIYLEASHTKAGKRRS 230 Query: 218107 IPLTPYLASILRELKRLNDTPPSIRQIRDLTAKGESWSPSPWVFASKKSADGKIAEPRIA 218286 IP+ + L+ R + + E+ PWVFA ++ ++ Sbjct: 231 IPINEGAMAALK---------------RRMAFRSETSPECPWVFA--RANGDRVISLSAG 273 Query: 218287 HNQALAVAGLPHLSLHGLRRSFGTLSEWVGCPVGVVAQIQGHKPSAIAEKHYRRRP 218454 QA A + ++H LR + G P+ V + GH A+ E++ P Sbjct: 274 FKQACQAAKIADFTIHDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTERYAHLAP 329 >ref|NP_848235.1|integrase Length = 416 Score = 60.1 bits (144), Expect = 1e-07 Identities = 59/251 (23%), Positives = 113/251 (45%), Gaps = 8/251 (3%) Frame = +1 Query: 217771 AEQSYRKLRALIRWCNDRPEYAGIIPPNAYNARAVRSAVPRTKAKDDCLQREQLSAWFDA 217950 A Q+ + ++ R+ NDR G+ P A S++ K +D LQ E++ +F A Sbjct: 161 AVQAREIISSVYRYANDRGH--GLFNPAA---DIKPSSIAMFKPRDRTLQPEEIGVFFRA 215 Query: 217951 VRKLGN-PVIATYLQALLITGARREEIAALRWTDVDF-QWRSLSIADKVEGSRVIPLTPY 218124 + +G + L+ +L+T R+ E W++VDF +W + +D+++GSR Sbjct: 216 LDHIGTMATMKLALKLVLLTLVRKSEFTHSTWSEVDFKKWTWIIPSDRMKGSR------- 268 Query: 218125 LASILRELKRLNDTPPSIRQIRDLTAKGESWSPSPWVFASKKSADGKIAEPRIAHNQALA 218304 A ++ K+ D ++ + A G + SK ++ + +++ Sbjct: 269 -AHVIYLPKQAQDLMVGLQ----MCAGGSEYLLPGRYSVSKPLSNAALNRLINVTVESVN 323 Query: 218305 VAG--LPHLSLHGLRRSFGTLSEWVGCPVGVVAQIQGHKPSAIA----EKHYRRRPLDLL 218466 AG L + S+H LRR+ TL G P + + H+ + + Y R+ +L Sbjct: 324 DAGGYLDNFSVHDLRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNKAEYARQRAYML 383 Query: 218467 RTWHDEIEAWM 218499 + W D ++AW+ Sbjct: 384 QQWADMVDAWI 394 >ref|NP_817718.1|gp41 Length = 400 Score = 59.7 bits (143), Expect = 1e-07 Identities = 75/295 (25%), Positives = 112/295 (37%), Gaps = 10/295 (3%) Frame = +1 Query: 217588 SERHLSDHENLAHAGGEPRKRGKGTTVAGPLAALMALKLSNLTAEAVAAWLESESQTRPT 217767 ++RHL D GG P GK P + L L + + LESE + T Sbjct: 122 TKRHLDDLVTALREGGLPSPNGKPRKPWSPRSVNYLLGL-------LVSILESEQKQGHT 174 Query: 217768 NAEQSYRKLRALIRWCNDRPEYAGIIPPNAYNARAVRSAVPRTKAKDDCLQREQLSAWFD 217947 R + AL+ DR E A PP+ V + + + AW Sbjct: 175 -----VRNVAALV----DRIE-ANPTPPDPLTESEVETLLAHIAGDRYAI------AW-- 216 Query: 217948 AVRKLGNPVIATYLQALLITGARREEIAALRWTDVDFQWRSLSIADK--VEGSRVIPLTP 218121 L + G R EI+ LRW DVD R++++ + G + I TP Sbjct: 217 ---------------ELALAGFRLAEISGLRWCDVDLDARTVTVQNTRLQRGKKRIEKTP 261 Query: 218122 YLASILRELKRLNDTPPSIRQIRDLTAK-----GESWSPSPWVFASKKSADGKIAEPRIA 218286 + REL +D + + R + A GE++ S +V ++ G P Sbjct: 262 KSRASRRELPLPDDLFAAFKAARKIQAADQLRLGEAYEASGYVVVNEA---GTPLTPNAI 318 Query: 218287 HNQ---ALAVAGLPHLSLHGLRRSFGTLSEWVGCPVGVVAQIQGHKPSAIAEKHY 218442 N+ L AGL H+ LH R + GTL G P +++ GH A + Y Sbjct: 319 ENRWARVLKAAGLRHVRLHDARHTCGTLMHLRGVPTALISAWLGHASKAFTLQTY 373 >ref|NP_046572.1|ABC transporter Length = 705 Score = 59.7 bits (143), Expect = 1e-07 Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Frame = -2 Query: 242982 IEVNNLNFFYNKF-HALKNINLRIPEGKVTAFIGPSGCGKSTLLRTFNKMFALYPEQRAE 242806 I+ NLN + + +++INL + IG SG GKST ++ +K++ + + Sbjct: 483 IKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKV-----PD 537 Query: 242805 GEILMDGENLLTTKRDISLLRARIGMVFQKPTPFPMSIYDNIAFGVKMFEKLTRSEMDDR 242626 I ++G ++ + D +R RI + + P F +I +N+ G E ++E+++ Sbjct: 538 KSIYLNGLDI--NRYDHLSIRKRIVYIDENPFLFKGTIKENLCMG----EIFDQNEIENA 591 Query: 242625 VEWALTKAALWNEVKD---KXXXXXXXXXXXXXQRLCIARGIAIRPEVLLLDEPCSALDP 242455 + + N K K QRL +AR I +P+VL+LDE S +DP Sbjct: 592 CIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDP 651 Query: 242454 ISTGRIEELIAELKSDYTVVIVTHN 242380 +T I E + + D ++++THN Sbjct: 652 DNTKLIYETLHRM--DCLIILITHN 674 Score = 48.9 bits (115), Expect = 2e-04 Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 6/156 (3%) Frame = -1 Query: 114271 VLDGVDLALAPGETLALLGRNGSGRSTLAKAVMGLVRTAG-SVRIAGAECAGARTFEIAR 114095 +++ ++L L + + ++G +G+G+ST AK++ L + S+ + G + I + Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 114094 RGVAYVAESRDVFPLLSVRDNLRLGLRGTSGTAERTALDRLFERF-----PLLAARADVK 113930 R + Y+ E+ +F ++++NL +G E + F + + Sbjct: 558 R-IVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSEN 615 Query: 113929 AGRLSGGEQQVLALVRALAGRPRVLIVDEPAEGLAP 113822 LS G++Q LAL RA+ +P+VLI+DE + P Sbjct: 616 GSNLSTGQKQRLALARAILHQPQVLILDESLSNIDP 651 Score = 39.3 bits (90), Expect = 0.18 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = -2 Query: 103779 NFVQQAQLKRDCEE-MSRMLRVKSPGLHEEIQNLSGGNQQKVLIGRWLLTQPRILILDEP 103603 N ++ A + C E + + + S L E NLS G +Q++ + R +L QP++LILDE Sbjct: 586 NEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDES 645 Query: 103602 TRGID 103588 ID Sbjct: 646 LSNID 650 >ref|YP_024677.1|gp04 Length = 90 Score = 57.8 bits (138), Expect = 5e-07 Identities = 32/90 (35%), Positives = 49/90 (54%) Frame = -3 Query: 41513 LTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 41334 + K++L + G+ K ++ +EA E I +L G++V L+GFG F + + R G Sbjct: 1 MNKSDLINHVAAETGMTKTDSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTG 60 Query: 41333 RNPKTGEAIPIAARRVVTFHASQKLKALVE 41244 RNP TGE I I A + F A + LK V+ Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKDAVK 90 >ref|NP_958252.1|hypothetical protein Length = 263 Score = 57.8 bits (138), Expect = 5e-07 Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 22/185 (11%) Frame = +1 Query: 264232 RQIILDTETTGLNARTGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERDSDPGALAVHGLT 264408 R + D ETTG++ DR++ ++L + LT L + +P + GA AVHG+T Sbjct: 6 RMVAFDLETTGVDVEQ-DRIVTAAAIDLGAEKPLT---LEWLADPGIEIPEGATAVHGIT 61 Query: 264409 TEFLSDKPKFAEVAHQILDFVKDA---------ELIIHNAPFDLGFLDAEFARLGLPPFT 264561 TE + E AH ++D V + ++ HN P+DL LD E R LP Sbjct: 62 TEHAREH---GERAHDVVDQVAETLALRVRDGVPVVGHNVPYDLTLLDRECRRYELPLLQ 118 Query: 264562 EHCGG----VIDTLVQAKQMFPGKR--------NSLDALCDRFGISNAHRTLHGALLDSE 264705 + G VIDT V + P ++ L L + + HG D+ Sbjct: 119 DRLDGTPLHVIDTRVLDQHCLPYRKRVSETQGARQLITLAQVYSLPWDAEAAHGCSYDAL 178 Query: 264706 LLAEV 264720 + A + Sbjct: 179 MAARI 183 >ref|NP_612844.1|Gp15 protein Length = 983 Score = 57.8 bits (138), Expect = 5e-07 Identities = 38/116 (32%), Positives = 50/116 (43%), Gaps = 7/116 (6%) Frame = +3 Query: 228165 PAAGNVVRTF----DGSKSKGIDIANSXXXXXXXXXXXXXXXXXXXLRGYGNLIILKHNA 228332 P G + TF G K GID YG + + H Sbjct: 860 PTTGTITATFPTYPSGGKHDGIDFGTPIGTPVRVSKDGVVIKRRELTTSYGKYLFVDHGG 919 Query: 228333 DYLTAYAHNRALLVKEGQSVTQGQSIAEMGNS-DSDRVALHFELRYGG--RSIDPS 228491 +T YAHN LLV EG V +GQ IA+ GN+ +S LH+ELR G +++ PS Sbjct: 920 GLITIYAHNSELLVNEGDRVKRGQIIAKTGNTGNSTGPHLHWELRVNGIPQNVAPS 975 >ref|NP_064745.1|gp7 Length = 540 Score = 53.9 bits (128), Expect = 7e-06 Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 4/186 (2%) Frame = +1 Query: 271327 SARLRAGNAGYAPPAISASARPGPSSRNAVAPASTHAARQLAHSTGSAICRASLSRPVST 271506 +A A NAG + A SASA A A ++T++A + + SA A +T Sbjct: 114 AAATSATNAGASETAASASA-------TASATSATNSATSASQAATSASAAAVSEGNAAT 166 Query: 271507 SSTDAPSIPENSRVPGSGRRTRV-AASV-ARKAGTAA--ASRRVCDAIRTQTGATRSAPA 271674 S T+A + ++ S T+ AASV A A T+A A+ +A +Q A S Sbjct: 167 SETNAANSATSASGSASTATTQASAASVSATNAATSASNAATSATNAAASQAAAATSETN 226 Query: 271675 CVASPATASTSACRPATTNASPGFAIAMAASRPSHSCASCERVRPRTNTIRSSPPLAASI 271854 AS +T +TSA AT+ A+ + + A ++ +++ S +S AAS Sbjct: 227 AAASESTVTTSATNAATSEANAATSASTATTQATNAATSASTASTSATNAATSETNAASS 286 Query: 271855 ARARAS 271872 A + AS Sbjct: 287 ASSAAS 292 Score = 53.5 bits (127), Expect = 9e-06 Identities = 56/194 (28%), Positives = 87/194 (44%) Frame = +1 Query: 271291 ASQLVTPSTERKSARLRAGNAGYAPPAISASARPGPSSRNAVAPASTHAARQLAHSTGSA 271470 AS+ ++ SA +A A A ++++ S NA A + T+AA ++GSA Sbjct: 124 ASETAASASATASATSATNSATSASQAATSASAAAVSEGNA-ATSETNAANSATSASGSA 182 Query: 271471 ICRASLSRPVSTSSTDAPSIPENSRVPGSGRRTRVAASVARKAGTAAASRRVCDAIRTQT 271650 + + S S+T+A + N+ T AAS AAA+ +A +++ Sbjct: 183 STATTQASAASVSATNAATSASNAATSA----TNAAAS------QAAAATSETNAAASES 232 Query: 271651 GATRSAPACVASPATASTSACRPATTNASPGFAIAMAASRPSHSCASCERVRPRTNTIRS 271830 T SA S A A+TSA ATT A+ A AS + + A+ E TN S Sbjct: 233 TVTTSATNAATSEANAATSA-STATTQATNAATSASTASTSATNAATSE-----TNAASS 286 Query: 271831 SPPLAASIARARAS 271872 + A+S A+AS Sbjct: 287 ASSAASSATSAQAS 300 >ref|NP_817615.1|gp26 Length = 1008 Score = 53.9 bits (128), Expect = 7e-06 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 16/149 (10%) Frame = +2 Query: 383 ATDLGSTVGNISLPGLGDGVTKGVGSTLSSTGTIVGAAADAVSNGLGQIGSTKDPVGTTV 562 AT V +S G+ DG KG+ TL + ++ +GQ+G P+ + Sbjct: 416 ATQFNEMVNRVSQNGVMDGAMKGLSQTLDGVTNLFTRLMESGLQAMGQLGG---PLNNFL 472 Query: 563 AGLGNVVGATSNTVSGLS----STVKALGTGPLAPLAPVTTPVGTV------------LD 694 G+G++ A ++ LS + + +LGT LAP+ TP T L Sbjct: 473 TGIGDLAVALMPALTSLSGLIGNVLGSLGTA-LAPIVTALTPAFTTLADTLGSLLVPNLQ 531 Query: 695 TVANGLTAAGTTIGSTLSSGAVQQVTQPI 781 T+ N LT T IG+TL++ A+QQ+ QP+ Sbjct: 532 TLGNILTPVATMIGTTLTT-ALQQI-QPM 558 >ref|NP_958556.1|putative integrase Length = 391 Score = 53.1 bits (126), Expect = 1e-05 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 21/183 (11%) Frame = +1 Query: 217876 RSAVPRTKAKDDCLQREQLSAWFDAVRKLGNPVIATYLQALLITGARREEIAALRWTDVD 218055 +++ PR + + RE+L+ + + ++ G V TY + L TG R+ E AL W D+D Sbjct: 167 KTSRPRRDTEHNVYTREELNQFLEVAKEYGL-VQYTYFKLLSATGLRKSEALALTWQDID 225 Query: 218056 FQWRSLSIADKV----------------EGSRVIPLTPYLASILRELKR-----LNDTPP 218172 + +LSI + + R++P++ L +L + K+ N Sbjct: 226 LKAGTLSINKTLAYGLDNKTIIQPPKSPKSKRILPISDSLKEVLIDYKQKQKIISNKLFH 285 Query: 218173 SIRQIRDLTAKGESWSPSPWVFASKKSADGKIAEPRIAHNQALAVAGLPHLSLHGLRRSF 218352 +I+ +K + W S ++A K A+ HN L H+++HG R +F Sbjct: 286 TIKGTYLKMSKPDQWLKS--IYAKDHEEKVKYAK---THNLKEPQPDLRHITVHGFRHTF 340 Query: 218353 GTL 218361 TL Sbjct: 341 ATL 343 >ref|NP_813780.1|internal virion protein D Length = 1392 Score = 49.3 bits (116), Expect = 2e-04 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 2/117 (1%) Frame = -3 Query: 261674 RPDYVQRMTERSQKYLYHIVEELEARHMPTE-LALLPFIESAYNPQALSVAKAAGMWQFM 261498 R D ++ Y I + +A +P E L FIES++NP A S G+ QF Sbjct: 3 RKDEYAKLVAEGTPYDDAIRQAADANGVPYEYLHKKIFIESSFNPDAKSPTGPLGLGQFT 62 Query: 261497 PGTGRTYNLKRNMWQDERRDVLASTSAALDYLSRLHDMF-GDWYLALAAYNWGEGNV 261330 TG+ Y L M ++R D + S +A+ Y L + GD AYN G G + Sbjct: 63 KATGKAYGL---MTDEDRLDPIKSINASAQYTRDLMGTYKGDMLKVALAYNQGNGRL 116 >ref|NP_046842.1|minor tail subunit Length = 837 Score = 48.9 bits (115), Expect = 2e-04 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 4/150 (2%) Frame = +2 Query: 359 VISTVGQTATDLGSTVGNISLPGLGDGVTKGVGSTLSSTGTIVGAAADAVSNGLGQIGST 538 +++ + + A V ++ G+ DG +G+ TL G+I+ + +GL +G Sbjct: 282 LLAPLQEFANGFNDMVNRVTSNGVFDGAMQGLSQTL---GSILNLFNRLMESGLQAMGQL 338 Query: 539 KDPVGTTVAGLGNVVGATSNTVSGLSSTV-KALGT--GPLAPLAPVTTPVGTVL-DTVAN 706 P+ T V G+G++ A ++ +SS + LGT LAP+ TP T L DT+ Sbjct: 339 GGPLSTLVNGIGDLFIALMPALTSVSSLLGNVLGTLGTQLAPIITALTPAFTTLADTLGT 398 Query: 707 GLTAAGTTIGSTLSSGAVQQVTQPISSAIT 796 LT A +G L+ V + + +A+T Sbjct: 399 MLTGALQALGPVLT-----VVAETLGTALT 423 >ref|NP_817647.1|gp58 Length = 135 Score = 48.9 bits (115), Expect = 2e-04 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Frame = +3 Query: 219279 PPVVEVLARL--QLQPSKPNGAGYAQVRCPIHGENHASLSIHFERGNWRCFACGEAGGDA 219452 P +V+V+ R + +P + + + RCP HG+ S SI F+ +RCFAC G A Sbjct: 5 PLIVKVIHRYHPEWEPPRQGRNDWMKTRCPFHGDETPSASISFKHNAFRCFAC-PVKGSA 63 Query: 219453 LELYRRARGLSFAQAARELDALA 219521 + + + +S+A+A R + L+ Sbjct: 64 VAIIKEQEEVSYAEAKRIAEELS 86 >ref|YP_024873.1|nudix hydrolase motif containing protein Length = 578 Score = 46.6 bits (109), Expect = 0.001 Identities = 31/70 (44%), Positives = 36/70 (51%) Frame = -1 Query: 128686 AVAEALSTRMMKRGGAPRTVSCGVVILDTAGRVFLAHATDTTHWDIPKGQGEPGETPADA 128507 AVA AL T + R + V + T+ RV L D T W +P G E GETP DA Sbjct: 29 AVAIALHTAQDETTLVERPAAGVVYVAATSNRVLLLCRPDGT-WGLPAGSIEEGETPEDA 87 Query: 128506 ALRELLEETG 128477 A RE EETG Sbjct: 88 ARRETCEETG 97 >ref|NP_052116.1|internal virion protein D Length = 1320 Score = 45.8 bits (107), Expect = 0.002 Identities = 43/123 (34%), Positives = 57/123 (46%), Gaps = 2/123 (1%) Frame = -3 Query: 261581 LALLPFIESAYNPQALSVAKAAGMWQFMPGTGRTYNLK-RNMWQDERRDVLASTSAALDY 261405 L L F ES++NP+A S G+ QF GT LK + D+R + + AA + Sbjct: 29 LRKLAFNESSFNPKAKSPTGPKGLMQFTKGTATALGLKVTDADDDDRYNPELAVDAAARH 88 Query: 261404 LSRLHDMF-GDWYLALAAYNWGEGNVQRAIARNQAAGLPTDYQNLRMPNETRNYVPKLQA 261228 LS L + GD A AYN GEG R A A D+ ++ E RNY+ L Sbjct: 89 LSDLIRKYDGDELKAALAYNQGEG---RNGAPQMQAYDKGDWASI--SEEGRNYMRNLMD 143 Query: 261227 VKN 261219 V N Sbjct: 144 VAN 146 >ref|NP_958506.1|putative integrase Length = 391 Score = 45.1 bits (105), Expect = 0.003 Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 19/181 (10%) Frame = +1 Query: 217876 RSAVPRTKAKDDCLQREQLSAWFDAVRKLGNPVIATYLQALLITGARREEIAALRWTDVD 218055 +++ PR + + +++L+ + + + G V TY + L TG R+ E AL W+D++ Sbjct: 167 KTSRPRRDTEHNVYTQDELNQFLEVAKDYGL-VPYTYFKLLSATGLRKSEALALTWSDIN 225 Query: 218056 FQWRSLSIADKV----------------EGSRVIPLTPYLASILRELKRLNDTPPSIRQI 218187 +LS+ + + R++P++ L +L + KR I + Sbjct: 226 LTAGTLSVNKTLAYGLNGKTIIQPPKSPKSKRILPISDGLKEVLIDYKRKQKI---ISKE 282 Query: 218188 RDLTAKG---ESWSPSPWVFASKKSADGKIAEPRIAHNQALAVAGLPHLSLHGLRRSFGT 218358 T KG P W+ + + AE +N L H+++HG R +F T Sbjct: 283 LFHTNKGTYLRISKPDQWLKSIYAKDHEEKAEYAKKYNLKEPQPDLRHITVHGFRHTFAT 342 Query: 218359 L 218361 L Sbjct: 343 L 343 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 45.1 bits (105), Expect = 0.003 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Frame = -3 Query: 261590 PTELALLPFIESAYNPQALSVAKAAGMWQFMPGTGRTYNLKRNMWQDERRDVLASTSAAL 261411 P +A + ES +N +A S A G+ Q MP T ++ + N D ++V+ T Sbjct: 1437 PALIAAVIQQESGFNAKARSGVGAMGLMQLMPATAKSLGV--NNAYDPYQNVMGGTK--- 1491 Query: 261410 DYLSRLHDMFG-DWYLALAAYNWGEGNVQRAIARNQAAGLPTDYQNLRMPNETRNYVPKL 261234 YL++ + FG + ALAAYN G GNV + Y + ET+NYV K+ Sbjct: 1492 -YLAQQLEKFGGNVEKALAAYNAGPGNVIK-------------YGGIPPFKETQNYVKKI 1537 Query: 261233 QA 261228 A Sbjct: 1538 MA 1539 Score = 43.9 bits (102), Expect = 0.007 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Frame = +3 Query: 228303 GNLIILKHNADYLTAYAHN-RALLVKEGQSVTQGQSIAEMGNS-DSDRVALHFELRYGGR 228476 GN +++K + + Y H VK GQSV GQ+I ++G++ +S LH ++ G+ Sbjct: 1611 GNWVVIKQDDGTVAKYMHMLNTPSVKAGQSVKAGQTIGKVGSTGNSTGNHLHLQIEQNGK 1670 Query: 228477 SIDPSRYL 228500 +IDP +Y+ Sbjct: 1671 TIDPEKYM 1678 >ref|NP_046874.1|putative DNA primase Length = 129 Score = 44.7 bits (104), Expect = 0.004 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +3 Query: 219357 CPIHGENHASLSIHFERGNWRCFACGEAGGDALELYRRARGLSFAQAARELDALATVANI 219536 CP HG+ S ++ ++ + C ACG GD + + R +SFA+A R + L+ NI Sbjct: 31 CPFHGDETPSAAVSYDLQGFNCLACG-VRGDVISIIRHEEEVSFAEAVRIAEGLSVGGNI 89 >ref|YP_006619.1|Gp39 Length = 202 Score = 44.7 bits (104), Expect = 0.004 Identities = 28/91 (30%), Positives = 47/91 (51%) Frame = +1 Query: 264238 IILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLTTEF 264417 +I+DTETTGL D +IEI + + L L+ V P R P A ++ +T E Sbjct: 22 VIIDTETTGL--MDFDEIIEITIINMRGEIL----LNSLVKPSRPIPPEATKINHITNEM 75 Query: 264418 LSDKPKFAEVAHQILDFVKDAELIIHNAPFD 264510 ++D P +++V +L + + + N+ FD Sbjct: 76 VADAPTWSDVFPAVLKIIWKYKWLAWNSSFD 106 >ref|NP_695118.1|putative tail protein Length = 1517 Score = 43.9 bits (102), Expect = 0.007 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 3/126 (2%) Frame = +2 Query: 437 GVTKGVGSTLSSTGTIVGAAADAVSN---GLGQIGSTKDPVGTTVAGLGNVVGATSNTVS 607 G+ K G+ + + GT G AV GL ++ + +GT + V A N S Sbjct: 621 GIGKAAGTIIEAFGTAFGIVVKAVGEAAPGLAKLSPLVEAIGTALGNAAPFVTAFGNAFS 680 Query: 608 GLSSTVKALGTGPLAPLAPVTTPVGTVLDTVANGLTAAGTTIGSTLSSGAVQQVTQPISS 787 + S + + + + T +GT + VA +T IG+T++ AV Q+ Sbjct: 681 SILSVLSPV----IDAFSRFATALGTAISGVAEAITPIIQIIGNTIT--AVTQIIANAIV 734 Query: 788 AITPLV 805 AI P++ Sbjct: 735 AIAPII 740 Score = 42.7 bits (99), Expect = 0.016 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 9/216 (4%) Frame = +2 Query: 362 ISTVGQTATDLGSTVGNISLPGLGDGVTKGVGSTLSSTGTIVGAAADAVSNGLGQIGSTK 541 I TV QT + S + + + +T+ + +SS G ++ AA ++N + +G+ Sbjct: 801 IITVVQTLAPIISQI----ISAIVTAITQ-IAPIISSIGGVISAALQGIANIIQSVGTA- 854 Query: 542 DPVGTTVAGLGN-VVGATSNTVSGLSSTVKALGTGPLAPLAPVTTPVGTVLDTVA----N 706 + T G+G + A S +S+T A+G L +A V VGT + T A N Sbjct: 855 --ISTAAQGIGQGIQSALEGVASIISATGAAIGAA-LQGIASVVQSVGTSISTAAKGIGN 911 Query: 707 GLTAAGTTIGSTLSS--GAVQQVTQPISSAITPLVITAXXXXXXXXXXXXXXXPVSGL-L 877 G+ +A I S ++S A+ V +++ + A ++ L Sbjct: 912 GIKSAFEGISSVITSVGNAISSVLNSLANVFNSIGTAAQKAGVGFNQLANGVVKITNTNL 971 Query: 878 GQIGGAISSAGKQVGGTS-SQPLVGDVGQLVTAVGN 982 G + ++++ VG S S + G + +GN Sbjct: 972 GDMAASLAAVAHGVGSISDSSAGLAQAGAGMAQLGN 1007 Score = 41.6 bits (96), Expect = 0.036 Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 15/138 (10%) Frame = +2 Query: 437 GVTKGVGSTLSSTGTIVGAAADAVSNGLGQIGSTKDPVGTTVAGLGNVVGATSNTV-SGL 613 G+ G+G ++S T++ + VS L +G+ T V G+G G + Sbjct: 582 GIGAGIGIIVASF-TLLATQSQGVSQILKALGTA---FSTVVQGIGKAAGTIIEAFGTAF 637 Query: 614 SSTVKALGTGP--LAPLAPVTTPVGTVLDTVANGLTAAGTTIGSTLS------------S 751 VKA+G LA L+P+ +GT L A +TA G S LS + Sbjct: 638 GIVVKAVGEAAPGLAKLSPLVEAIGTALGNAAPFVTAFGNAFSSILSVLSPVIDAFSRFA 697 Query: 752 GAVQQVTQPISSAITPLV 805 A+ ++ AITP++ Sbjct: 698 TALGTAISGVAEAITPII 715 >ref|NP_039690.1|predicted 86.4kd protein; 52Kd observed Length = 837 Score = 43.9 bits (102), Expect = 0.007 Identities = 47/207 (22%), Positives = 79/207 (38%), Gaps = 6/207 (2%) Frame = +2 Query: 386 TDLGSTVGNI------SLPGLGDGVTKGVGSTLSSTGTIVGAAADAVSNGLGQIGSTKDP 547 T + +GN+ L + +T + S+ GT++ A A+ L Q+ + Sbjct: 362 TSVSGLIGNVLGTLGTQLAPIVTALTPAFQTLASTLGTMLTGALQALGPILTQVATL--- 418 Query: 548 VGTTVAGLGNVVGATSNTVSGLSSTVKALGTGPLAPLAPVTTPVGTVLDTVANGLTAAGT 727 +GTT L + A + L + + + + LAP + T L VA + Sbjct: 419 IGTT---LNTALQALQPMLPSLMQSFQQISDVLVTSLAPHIPALATALGQVAGAVLQLAP 475 Query: 728 TIGSTLSSGAVQQVTQPISSAITPLVITAXXXXXXXXXXXXXXXPVSGLLGQIGGAISSA 907 TI STL VQ V + + LV T P++ L + GA+ Sbjct: 476 TIISTLVPAFVQLVPK-----VAELVPTIVNLVQSFANLMPVVLPLAQALVSVAGAVIQV 530 Query: 908 GKQVGGTSSQPLVGDVGQLVTAVGNTV 988 G +GG L+G + L + N + Sbjct: 531 GVSIGGA----LIGALANLTEIISNVI 553 >ref|NP_040733.1|morphogenesis protein B Length = 258 Score = 43.9 bits (102), Expect = 0.007 Identities = 21/44 (47%), Positives = 34/44 (77%), Gaps = 1/44 (2%) Frame = +3 Query: 227901 YRVERGDTLYKIARDNRTSVQSIVRWN-QMTNPDAIEVGQVLRV 228029 ++V+ GDTL KIA DN+T+V ++ N ++TNP+ I+VGQ +R+ Sbjct: 214 HKVKSGDTLSKIAVDNKTTVSRLMSLNPEITNPNHIKVGQTIRL 257 >ref|NP_039722.1|predicted 14.5Kd protein Length = 130 Score = 42.7 bits (99), Expect = 0.016 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Frame = +3 Query: 219357 CPIHGENHASLSIHFERGNWRCFACGEAGGDALELYRRARGLSFAQAARELDALATVANI 219536 CP HG+ S ++ ++ + C ACG GD + + R ++FA+A R + L+ N+ Sbjct: 31 CPFHGDETPSAAVSYDLQGYNCMACG-VRGDVISIIRHEEEVTFAEAKRIAENLSVGGNV 89 Query: 219537 ----------ARALDYSLNAGGEA*AQPIRS 219599 +R + AG + +P+RS Sbjct: 90 PVQRKPARKPSRRVFGESRAGRPSGTKPVRS 120 >ref|NP_944326.1|gp18 Length = 698 Score = 42.4 bits (98), Expect = 0.021 Identities = 32/105 (30%), Positives = 44/105 (41%) Frame = -1 Query: 128686 AVAEALSTRMMKRGGAPRTVSCGVVILDTAGRVFLAHATDTTHWDIPKGQGEPGETPADA 128507 A A + + GA I+ AG L W +P G+ E GETP +A Sbjct: 558 AAANVNANANPREAGAQDAAMRAAGIVFRAGDKVLLMKRPAGDWGLPAGKVEDGETPEEA 617 Query: 128506 ALRELLEETGIEFAPARLLDLGRFAYRHDKDLHLFAVQVAEGEID 128372 A RE LEETG L LG++ D+ H F V +++ Sbjct: 618 ARRETLEETG-HAGDYVLAPLGKY----DEFFHAFVADVNPFDVE 657 >ref|NP_040602.1|Tail fiber protein Length = 401 Score = 42.4 bits (98), Expect = 0.021 Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 1/195 (0%) Frame = +1 Query: 271288 RASQLVTPSTERKSARLRAGNAGYAPPAISASARPGPSSRNAVAPASTHAARQLAHSTGS 271467 R + +V ST A+ AG+A + ++A S A A++ +A Q A S Sbjct: 115 RNASVVAQSTA--DAKKSAGDASASAAQVAALVTDATDS----ARAASTSAGQAASSAQE 168 Query: 271468 AICRASLSRPVSTSSTDAPSIPENSRVPGSGRRTRVAASVARKAGTAAASRRVCDAIRTQ 271647 A A + +T + + + E+S+ +A A+ + T AA+ + A Sbjct: 169 ASSGAEAASAKATEAEKSAAAAESSK-----NAAATSAGAAKTSETNAAASQQSAATSAS 223 Query: 271648 TGATRSAPACV-ASPATASTSACRPATTNASPGFAIAMAASRPSHSCASCERVRPRTNTI 271824 T AT+++ A A A AS A + + TNAS + AAS + + S + Sbjct: 224 TAATKASEAATSARDAVASKEAAKSSETNASS--SAGRAASSATAAENSARAAKTSETNA 281 Query: 271825 RSSPPLAASIARARA 271869 RSS A A A A Sbjct: 282 RSSETAAERSASAAA 296 >ref|NP_056689.1|putative minor tail protein Length = 1510 Score = 42.0 bits (97), Expect = 0.028 Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 6/130 (4%) Frame = +2 Query: 362 ISTVGQTATDLGSTVGNISLPGLGDGVT---KGVGSTLSSTGTIVGAAADAVSNGLGQIG 532 +S + + G + ++ G+G ++ GV S +S+TG+ +G+A +++ + +G Sbjct: 834 LSGIASIVSAAGMAIATAAM-GIGTAISTALSGVASIISATGSAIGSALQGIASVVQSVG 892 Query: 533 STKDPVGTTVAGLGNVVGATSNTVSGLSSTVKALG---TGPLAPLAPVTTPVGTVLDTVA 703 ++ + T G+GN + + G+SS + + G + L LA V +GT Sbjct: 893 AS---ISTAAQGIGNGI---KSAFEGISSVITSAGNAISSVLNSLANVFNSIGTAAQKAG 946 Query: 704 NGLTAAGTTI 733 G T + Sbjct: 947 AGFNQLATGV 956 Score = 40.4 bits (93), Expect = 0.081 Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 15/137 (10%) Frame = +2 Query: 437 GVTKGVGSTLSSTGTIVGAAADAVSNGLGQIGSTKDPVGTTVAGLGNVVGATSNTV-SGL 613 G+ G+G ++S T++ + VS L +G+ T V G+G G + Sbjct: 575 GIGAGIGIIVASF-TLLATQSQGVSQILKALGTA---FSTVVQGIGKAAGIIIEAFGTAF 630 Query: 614 SSTVKALGTGP--LAPLAPVTTPVGTVLDTVANGLTAAGTTIGSTLS------------S 751 VKA+G LA L+P+ +GT L A +TA G S LS + Sbjct: 631 GIVVKAVGEAAPGLARLSPLVEAIGTALGNAAPFITAFGNAFSSILSVLPPVIDALSRFA 690 Query: 752 GAVQQVTQPISSAITPL 802 A+ I+ AITP+ Sbjct: 691 TALGTAISGIAEAITPI 707 Score = 39.3 bits (90), Expect = 0.18 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 4/138 (2%) Frame = +2 Query: 356 GVISTVGQTATDLGSTVGNISLPGLGDGVTKGVGSTLSSTGTIVGAAADAVSNGLGQIGS 535 GV S + T + +GS + +G+ S + S G + AA + NG I S Sbjct: 865 GVASIISATGSAIGSAL-------------QGIASVVQSVGASISTAAQGIGNG---IKS 908 Query: 536 TKDPVGTTVAGLGNVVGATSNTVSGLSSTV----KALGTGPLAPLAPVTTPVGTVLDTVA 703 + + + + GN + + N+++ + +++ + G G V T L +A Sbjct: 909 AFEGISSVITSAGNAISSVLNSLANVFNSIGTAAQKAGAGFNQLATGVVKITNTNLGDMA 968 Query: 704 NGLTAAGTTIGSTLSSGA 757 L A IGS S A Sbjct: 969 ASLAAVAHGIGSISDSSA 986 >ref|NP_665958.1|putative glutaminase Length = 191 Score = 41.6 bits (96), Expect = 0.036 Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Frame = +3 Query: 215196 GYDSCGVATVVDGQARRERSMSRVADLDAHVRSAGLAGSTGIAHTRWATHGAPATCNAHP 215375 G S GVA VDG+ RER + + +DA A + HTR+AT G + NAHP Sbjct: 28 GGHSWGVAVAVDGELHRERGVGAMP-IDAV--DALPEADVALGHTRFATRGEISLRNAHP 84 Query: 215376 IFSRDE-----IALVHNG 215414 RD L HNG Sbjct: 85 FEVRDRDGEPVAMLAHNG 102 >ref|NP_040700.1|hypothetical protein Length = 265 Score = 40.8 bits (94), Expect = 0.062 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 8/159 (5%) Frame = +1 Query: 182620 AAAFQHVSVALMRGIAQVESGMNPNAVNTNTNGTVDIGLMQINSTWLPTLARE-GITRES 182796 A+A ++ L+ G+ Q ES NP T+G +GLMQ+ +P A+ G+T + Sbjct: 14 ASAQYNLDPRLVAGVVQTESSGNPRT----TSGVGAMGLMQL----MPATAKSLGVT--N 63 Query: 182797 LFDACTNAYVGAWILSQNIRQLGPNWNAIGAYNSASPD-----KRLAYARKVYDAIRTMP 182961 +D N Y GA +L +N+ + G A+ AY+ + K +Y KV I + Sbjct: 64 AYDPTQNIYGGAALLRENLDRYGDVNTALLAYHGGTNQANWGAKTKSYPGKVMKNINLLF 123 Query: 182962 DSPDTPMPILPPS--FTPPQQAQTYNPFASLSVSAPPVT 183072 + P++ P+ P AQ +AP +T Sbjct: 124 GNSG---PVVTPAAGIAPVSGAQEMTAVNISDYTAPDLT 159 >ref|NP_076780.1|integrase Length = 399 Score = 40.8 bits (94), Expect = 0.062 Identities = 55/245 (22%), Positives = 95/245 (38%), Gaps = 25/245 (10%) Frame = +1 Query: 217753 QTRPTNAEQSYRKLRALIRWCNDRPEYAGIIPPNAYNARAVRSA-VPRTKAKDDCLQREQ 217929 Q R T + Y+ +I GII N + V V + K + ++ + Sbjct: 140 QKRTTGQAKRYKLQFNIINRIFQHALSLGIIENNPCQSVIVPQVKVEQAKKEIKFYKKSE 199 Query: 217930 LSAWFDAVRKL-----GNPVIATYLQALLITGARREEIAALRWTDVDFQWRSLSIADKVE 218094 L+ F+ + L N L+ L+ +G R E AL W+D++FQ +++S++ Sbjct: 200 LAKLFNYLESLKSGQWSNEYFKALLRLLVASGLRIGEAMALSWSDINFQNQTVSVS---- 255 Query: 218095 GSRVIPLTPYLASILRELKRLNDTPPSIRQIRDLTAKGES-WSPSPWVFASKK------S 218253 + +R ++ DTP S + R ++ ++ + W F KK + Sbjct: 256 -----------KTTVRRF-QIQDTPKSNKSNRIISIDDKAIYVLKSWYFFQKKHFMKLGN 303 Query: 218254 ADGKIAEPRIAH------------NQALAVAGLPHLSLHGLRRSFGTLSEWVGCPVGVVA 218397 + P+I N + A LP LS HG RRS +L V+ Sbjct: 304 PQQNLVFPKIEGGVMDYHNLIYKLNNIIKNAELPLLSFHGFRRSHASLCLNAEMSYKVIQ 363 Query: 218398 QIQGH 218412 + GH Sbjct: 364 ERLGH 368 >ref|NP_803396.1|tail length tape measure protein Length = 1550 Score = 40.4 bits (93), Expect = 0.081 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +3 Query: 228297 GYGNLIILKHNADYLTAYAHNRALLVKEGQSVTQGQSIAEMGNSD-SDRVALHFELRYGG 228473 GYG + + A YAH VK GQ V GQ++ GN+ S LH+E+R+ G Sbjct: 1218 GYGKWVKIVKGA-LEVIYAHLSKYKVKTGQQVRVGQTVGISGNTGFSTGPHLHYEMRWNG 1276 Query: 228474 RSIDPSRYL 228500 R DP +L Sbjct: 1277 RHRDPLPWL 1285 >ref|NP_058454.1|orf 16 Length = 539 Score = 40.4 bits (93), Expect = 0.081 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +3 Query: 228297 GYGNLIILKHNADYLTAYAHNRALLVKEGQSVTQGQSIAEMGNSD-SDRVALHFELRYGG 228473 GYG + + A YAH VK GQ V GQ++ GN+ S LH+E+R+ G Sbjct: 443 GYGKWVKIVKGA-LEVIYAHLSKYKVKTGQQVRVGQTVGISGNTGFSTGPHLHYEMRWNG 501 Query: 228474 RSIDPSRYL 228500 R DP +L Sbjct: 502 RHRDPLPWL 510 >ref|NP_061549.1|Orf53 Length = 354 Score = 40.4 bits (93), Expect = 0.081 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 6/110 (5%) Frame = -1 Query: 79699 RRAAADERGGHQQHREIRRGRHQQQPREREAHADRQRIRLRMLVG------IEAHERLQQ 79538 R AA ER ++ + R ++ E +A A+R+ + LR+ +EA +R +Q Sbjct: 214 REAAEAERLAAERRAQEERDATARREAEAKAAAERRELELRLAAEKAEREKLEAQQRAEQ 273 Query: 79537 RRGDLVSERDQADLRERQRELALEHRIDREDQRLDHVVEHVREADRAEHR 79388 D ++A ERQR+ + RI+RE RE+D+A + Sbjct: 274 AERDAQRRAEEATAAERQRQADEQARIERE--------AAARESDKAHKK 315 Score = 38.1 bits (87), Expect = 0.40 Identities = 36/104 (34%), Positives = 43/104 (41%), Gaps = 8/104 (7%) Frame = -3 Query: 172991 EHERHAGDVGGADTALARERMILR----AHGDELVGARIQHFQR----RIERIAAGQPEI 172836 E E A G A RE ++ R A EL R + R R ERIA E Sbjct: 160 EFETEAARTKGKALAALREALVAREKYEAEQAELERLRAEAAAREQKEREERIAREAAEA 219 Query: 172835 GILVAHERGDEARDAVADLEARARHVAPERLDQLRQHARREGRQ 172704 L A R E RDA A EA A+ A R +LR A + R+ Sbjct: 220 ERLAAERRAQEERDATARREAEAKAAAERRELELRLAAEKAERE 263 >ref|NP_891600.1|Gp44 Length = 324 Score = 40.4 bits (93), Expect = 0.081 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Frame = -1 Query: 250255 GRIPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFVGVGAARVRD--MFEQ 250082 GRIP +L PGTGKT +A+A+ + V + ++G+D F+ R ++ Sbjct: 40 GRIPSMILHSPSPGTGKTTVAKALCEDVGVDYLFVNGADCKIDFIRDEITRFAQSVSLDE 99 Query: 250081 AKKHAPCIVFIDEID 250037 K+ +V IDE D Sbjct: 100 EKREKGKVVIIDEYD 114 >ref|NP_835566.1|hypothetical protein Length = 1260 Score = 39.7 bits (91), Expect = 0.14 Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 3/205 (1%) Frame = +3 Query: 181473 GGIAGSTGAAQSYSAAVSYN--NGPFSVAGGYFHATNSPASNGVRNGWTSSSDGTFDGPI 181646 G GS+G Q + S + NG + G A S + + + + S++ + + PI Sbjct: 943 GEDGGSSGTIQWWDKTYSDSGMNGITINSYGGVVALTSDYNRIIIDSYASANIESREAPI 1002 Query: 181647 NSGYASAHSFGIARIAGQYVAGPFTFGVGYSNAQYRRDASSVFGSNEHYNTGQGFVNYQA 181826 + + G+ R F F + +++ Y D +FGS+E+Y G G + Sbjct: 1003 YLSPNTKNKPGLNR---------FAFTLSNADSAYETDGYIMFGSDENYKYGAGLRFSKR 1053 Query: 181827 TNALLVGVGYSYTRSGGDTSATYHQVSAGADYSLSKRTDVYLTAAYQ-HASGQTGDGNGG 182003 +N LV V +GGDT+ S ++L KR D + Q + G N G Sbjct: 1054 SNKGLVQVVNGDYATGGDTTIE----SGMGKFNLVKRRDGNSYVSIQSYDLLAVGSDNAG 1109 Query: 182004 SMAAQASIGSYGYAGTSSQTMVNLG 182078 A SI Y+ ++ + + G Sbjct: 1110 DRVASNSIYKRTYSAPANLHITSAG 1134 >ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase accessory protein Length = 320 Score = 39.7 bits (91), Expect = 0.14 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Frame = -1 Query: 250282 DPQKFQKL--GGRIPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFV-GVG 250112 D + F+ L G++P +L PGTGKT +A+A+ + ++GSD FV G Sbjct: 29 DHETFKSLVSKGKLPHIILHSPSPGTGKTTVAKALCNDINAEMMFVNGSDCKIDFVRGPL 88 Query: 250111 AARVRDMFEQAKKHAPCIVFIDEID 250037 A R + + K P ++ IDE D Sbjct: 89 TAFARSVSMEGK---PKVIVIDEFD 110 >ref|YP_006507.1|Sit Length = 1140 Score = 39.3 bits (90), Expect = 0.18 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 9/88 (10%) Frame = +1 Query: 182662 IAQVESGMNPNAVNTNT---NGTVD---IGLMQINSTWLPTLARE--GITRESLFDACTN 182817 IA ESG NPNA +T T NG + +G+ Q S +ARE G++RE F+ + Sbjct: 766 IAATESGGNPNAKSTLTRSPNGKLSGGALGMFQFTS-----VAREETGLSREDSFNPEKS 820 Query: 182818 AYVGAWILSQNIRQLGPNWN-AIGAYNS 182898 A A ++S+ ++Q + N AI AYN+ Sbjct: 821 AEAAALLMSKYLKQANGDLNEAITAYNA 848 >ref|NP_996722.1|lysin Length = 429 Score = 39.3 bits (90), Expect = 0.18 Identities = 20/41 (48%), Positives = 26/41 (63%) Frame = +3 Query: 227901 YRVERGDTLYKIARDNRTSVQSIVRWNQMTNPDAIEVGQVL 228023 Y V+ GD L IAR T+VQS+V N ++NP+ I GQ L Sbjct: 387 YTVQSGDNLSSIARRLGTTVQSLVSMNGISNPNLIYAGQTL 427 >ref|NP_046936.1|gp41 Length = 304 Score = 39.3 bits (90), Expect = 0.18 Identities = 24/96 (25%), Positives = 45/96 (46%) Frame = +1 Query: 264238 IILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLTTEF 264417 +++DTETTGL +IEI + + L L V P + P ++ +T E Sbjct: 22 VVIDTETTGLGEYA--EIIEIAIINMRGEVL----LDTLVKPTKPIPPEVTEINHITNEM 75 Query: 264418 LSDKPKFAEVAHQILDFVKDAELIIHNAPFDLGFLD 264525 ++ P + +V ++L + + + N+ FD L+ Sbjct: 76 VASAPAWCDVFPKVLAIISKHKWLAWNSGFDARMLE 111 >ref|NP_663686.1|structural protein Length = 908 Score = 38.9 bits (89), Expect = 0.23 Identities = 18/41 (43%), Positives = 23/41 (56%) Frame = +3 Query: 228300 YGNLIILKHNADYLTAYAHNRALLVKEGQSVTQGQSIAEMG 228422 YGN ++KH T YAH + V GQ+V +GQ I MG Sbjct: 833 YGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMG 873 >ref|NP_112716.1|LYS Length = 429 Score = 38.9 bits (89), Expect = 0.23 Identities = 19/42 (45%), Positives = 28/42 (66%) Frame = +3 Query: 227901 YRVERGDTLYKIARDNRTSVQSIVRWNQMTNPDAIEVGQVLR 228026 Y V++GDTL IA + T+ Q + R N ++NP+ I GQV+R Sbjct: 333 YIVKQGDTLSGIASNWGTNWQELARQNSLSNPNVIYTGQVIR 374 >ref|NP_112710.1|ORF47 Length = 918 Score = 38.9 bits (89), Expect = 0.23 Identities = 18/41 (43%), Positives = 23/41 (56%) Frame = +3 Query: 228300 YGNLIILKHNADYLTAYAHNRALLVKEGQSVTQGQSIAEMG 228422 YGN ++KH T YAH + V GQ+V +GQ I MG Sbjct: 843 YGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMG 883 >ref|NP_108727.1|minor structural protein 3 Length = 906 Score = 38.9 bits (89), Expect = 0.23 Identities = 18/41 (43%), Positives = 23/41 (56%) Frame = +3 Query: 228300 YGNLIILKHNADYLTAYAHNRALLVKEGQSVTQGQSIAEMG 228422 YGN ++KH T YAH + V GQ+V +GQ I MG Sbjct: 831 YGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMG 871 >ref|NP_076626.1|endopeptidase Length = 894 Score = 38.9 bits (89), Expect = 0.23 Identities = 18/41 (43%), Positives = 23/41 (56%) Frame = +3 Query: 228300 YGNLIILKHNADYLTAYAHNRALLVKEGQSVTQGQSIAEMG 228422 YGN ++KH T YAH + V GQ+V +GQ I MG Sbjct: 819 YGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMG 859 >ref|NP_932394.1|DNA polymerase accessory protein Length = 319 Score = 38.9 bits (89), Expect = 0.23 Identities = 18/39 (46%), Positives = 24/39 (61%) Frame = -1 Query: 250255 GRIPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSD 250139 GRIP +L PGTGKT +ARA+ E F ++G+D Sbjct: 40 GRIPNIILHSPSPGTGKTTVARALVAEIDAEFLFVNGAD 78 >ref|NP_795429.1|putative integrase Length = 362 Score = 38.5 bits (88), Expect = 0.31 Identities = 59/221 (26%), Positives = 89/221 (40%), Gaps = 20/221 (9%) Frame = +1 Query: 217810 WCNDRPEYAGIIPPNAYNAR--AVR-------SAVPRT--------KAKDDCLQREQLSA 217938 WCND +Y G I N AVR A+P T K ++ +QL Sbjct: 117 WCNDL-KYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQ 175 Query: 217939 WFDAVRKLGNPVIATYLQALLITGARREEIAALRWTDVDFQWRSLSIADKVEGSRV---I 218109 + + V K N + L TG R+ E+ AL W D++ +LSI V ++V I Sbjct: 176 FLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLN--GNTLSINKAVTRTQVGLEI 233 Query: 218110 PLTPYLASILRELKRLNDTPPSIRQIRDLTAKGESWSPSPWVFASKKSADGKIAEPRIAH 218289 +T +S L L+D I L E++ S +F S+ + PR Sbjct: 234 DVTKTKSS--DRLISLDDETLEI-----LLELHETFPTSTLMFQSESGGIMTPSLPRKWL 286 Query: 218290 NQALAVAGLPHLSLHGLRRSFGTLSEWVGCPVGVVAQIQGH 218412 Q + LP +++HG R + +L G + V GH Sbjct: 287 LQIIKGTDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGH 327 >ref|NP_061640.1|phi PVL ORF 15 and 16 homologue Length = 1313 Score = 38.5 bits (88), Expect = 0.31 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +3 Query: 228297 GYGNLIILKHNADYLTAYAHNRALLVKEGQSVTQGQSIAEMGNSD-SDRVALHFELRYGG 228473 GYG + + A YAH VK G V GQ++ GN+ S LH+E+R+ G Sbjct: 1217 GYGKWVKIVKGA-LEVIYAHLSKYKVKTGHQVRVGQTVGISGNTGFSTGPHLHYEMRWNG 1275 Query: 228474 RSIDPSRYL 228500 R DP +L Sbjct: 1276 RHRDPLPWL 1284 >ref|NP_705643.1|gp17 Length = 695 Score = 38.5 bits (88), Expect = 0.31 Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 10/93 (10%) Frame = -3 Query: 118319 LTERADPDHEGGRVRQACPDDTCGYVHWN-NP---------LPVVAAIVELDGKILLARN 118170 L E D GG A T V+ N NP + A+ +DGK+LL + Sbjct: 534 LAEGGDTGAPGGARAGATAPPTVANVNANVNPREAGAQDAAMRAAGAVYVVDGKVLLMKR 593 Query: 118169 AAWPEGMFALITGFLENGETPEDGIAREVFEET 118071 P G + L G +E ETPE+ RE EET Sbjct: 594 ---PAGDWGLPAGKVEGNETPEEAARRETREET 623 Score = 38.5 bits (88), Expect = 0.31 Identities = 22/62 (35%), Positives = 32/62 (51%) Frame = -1 Query: 128557 WDIPKGQGEPGETPADAALRELLEETGIEFAPARLLDLGRFAYRHDKDLHLFAVQVAEGE 128378 W +P G+ E ETP +AA RE EETG + L+ LG+F D H F + + Sbjct: 598 WGLPAGKVEGNETPEEAARRETREETGYDH-DGELVPLGKF----DGFFHAFVAHLEPFD 652 Query: 128377 ID 128372 ++ Sbjct: 653 VE 654 >ref|NP_958122.1|gp17 Length = 694 Score = 38.5 bits (88), Expect = 0.31 Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 10/93 (10%) Frame = -3 Query: 118319 LTERADPDHEGGRVRQACPDDTCGYVHWN-NP---------LPVVAAIVELDGKILLARN 118170 L E D GG A T V+ N NP + A+ +DGK+LL + Sbjct: 533 LAEGGDTGAPGGARAGATAPPTVANVNANVNPREAGAQDAAMRAAGAVYVVDGKVLLMKR 592 Query: 118169 AAWPEGMFALITGFLENGETPEDGIAREVFEET 118071 P G + L G +E ETPE+ RE EET Sbjct: 593 ---PAGDWGLPAGKVEGNETPEEAARRETREET 622 Score = 38.5 bits (88), Expect = 0.31 Identities = 22/62 (35%), Positives = 32/62 (51%) Frame = -1 Query: 128557 WDIPKGQGEPGETPADAALRELLEETGIEFAPARLLDLGRFAYRHDKDLHLFAVQVAEGE 128378 W +P G+ E ETP +AA RE EETG + L+ LG+F D H F + + Sbjct: 597 WGLPAGKVEGNETPEEAARRETREETGYDH-DGELVPLGKF----DGFFHAFVAHLEPFD 651 Query: 128377 ID 128372 ++ Sbjct: 652 VE 653 >ref|NP_624306.1|hypothetical protein Length = 127 Score = 38.5 bits (88), Expect = 0.31 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = +3 Query: 207477 RLTVFVAAHNEETVIVDCLMALLATTYPRDR-LTIIPVNDRSTDNTRALIDEVRALAPEL 207653 R+ + AHNEE I + L +L + P+D L++ + D D+T EVRA + +L Sbjct: 23 RIVAVIPAHNEEHDITNALKSLTIQSVPKDYILSVFVIEDNCNDSTD---KEVRAFSDQL 79 Query: 207654 -IQPFHRETGKPGKAAALKDALRFIRGD 207734 + K KA AL R + GD Sbjct: 80 NLYVIKTVNNKDRKAGALNTFYRLMFGD 107 >ref|NP_817868.1|gp17 Length = 221 Score = 38.1 bits (87), Expect = 0.40 Identities = 53/202 (26%), Positives = 75/202 (37%), Gaps = 19/202 (9%) Frame = +3 Query: 190698 GTPDGTLPARDTVA---PPTVWLNAS*RARSNATFASIVQPCDSRAPPVRSTPRDDCRPT 190868 GTP G T+ PP ++ ++ IV D R P S P DD R T Sbjct: 21 GTPGGRNGVTGTIEIVHPPEPVVDIKTGQPTDKQQVRIVLATDERDP---SEPDDDGRRT 77 Query: 190869 CWRSAGLNGSVLSRLRFVMS--------YTATVQYARPSSSVCLSPASHCS------PVA 191006 + + + G++ LR + T T + P +SP+ H + PV Sbjct: 78 LYVKSYMRGAIGDALRKAGAKEPEVGGTLTVTFTHVTPPDRPGMSPSKHFAATYTPPPVT 137 Query: 191007 SRTFICDADSVTSEPTPSAPV--VYCA*AVNAGAISNTTPVRQPTFANRLSKPAPVAACS 191180 F A + TP AP AV A T V QPT A KPA ++ Sbjct: 138 GGYFAPPAGAPAPAVTPGAPAQPAPVPPAVQQ-AFPGATQVPQPTVAPEPVKPAAIS--- 193 Query: 191181 RLNAMWS*RSPLTHASRGSTSS 191246 +A W+ T A+ +T S Sbjct: 194 --DAAWAAMDAATRATVAATMS 213 >ref|NP_052286.1|hypothetical protein Length = 194 Score = 38.1 bits (87), Expect = 0.40 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Frame = +1 Query: 264235 QIILDTETTGLNARTGD--RLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLT 264408 +I +DTETTGL GD ++EI ++ + L+ V P + A A+HG+T Sbjct: 20 RIFIDTETTGL----GDDAEIVEICLIDSAGFIM----LNTLVKPTKPIPAEATAIHGIT 71 Query: 264409 TEFLSDKPKFAEVAHQILDFVKDAELIIHNAPFD 264510 E + P + ++ + + +I+NA +D Sbjct: 72 DEMVMYAPTWKDIHGAVASLFFEYGFVIYNADYD 105 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 981,933,951 Number of Sequences: 14420 Number of extensions: 18609013 Number of successful extensions: 73224 Number of sequences better than 0.5: 74 Number of HSP's better than 0.5 without gapping: 11898 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 73046 length of database: 3,019,461 effective HSP length: 127 effective length of database: 1,188,121 effective search space used: 107520198016 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig280 (265,783 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 217 4e-55 ref|NP_945089.1|gp58 115 3e-24 ref|NP_046572.1|ABC transporter 103 6e-21 ref|NP_758949.1|ORF58 89 3e-16 ref|NP_818300.1|gp250 85 3e-15 ref|NP_818239.1|gp188 72 2e-11 ref|NP_046877.1|putative non-heme haloperoxidase 68 4e-10 ref|NP_818403.1|gp105 65 4e-09 ref|NP_817650.1|gp61 62 2e-08 ref|NP_795486.1|hypothetical protein 58 5e-07 ref|NP_665964.1|putative plasmid partitioning protein Soj 54 7e-06 ref|YP_024984.1|adenylosuccinate synthetase 49 2e-04 ref|YP_052989.1|Hypothetical protein 49 2e-04 ref|NP_817998.1|gp25 45 0.003 ref|NP_817477.1|gp27 44 0.007 ref|NP_064745.1|gp7 43 0.012 ref|NP_818228.1|gp169 43 0.016 ref|NP_958209.1|gene 33 protein 41 0.060 ref|YP_164321.1|hypothetical protein 40 0.13 ref|NP_061549.1|Orf53 38 0.39 >ref|NP_945090.1|gp59 Length = 429 Score = 217 bits (553), Expect = 4e-55 Identities = 120/410 (29%), Positives = 204/410 (49%), Gaps = 1/410 (0%) Frame = +2 Query: 14234 KRAVGAMAFGNAMEWFDFGVYSYIAVTLGKVFFPSSSPSXXXXXXXXXXXXXXXVRPLGG 14413 +RAV A+ GN EWFDF YS+ +V + K+FFPS+ + +RP+GG Sbjct: 20 RRAVIAVIVGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLLSVSTIGVGFFMRPIGG 79 Query: 14414 MVFGPLGDRIGRQRVLAATMIMMAVGTFAIGLIPSYASIGIMAPILLLVARLVQGFSTGG 14593 +V G + D++GR+ L T+ +M GT IG P+Y G+ AP++++VARL+QGFS GG Sbjct: 80 IVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGG 139 Query: 14594 EYGGAATFIAEFATDRRRGFMGSFLEFGTLIGYXXXXXXXXXXXXXXSQETLLSWGWRVP 14773 E GGA ++ E R G+ S+++ ++ + SWGWR+P Sbjct: 140 EMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWRIP 199 Query: 14774 FFIAGPLGLVGLYVRLKLEETPAFKKXXXXXXXXXXXXPKQRFATLLVEQWKPLLQCVGL 14953 F + LG VG+Y+R +L + P F + F+ + L GL Sbjct: 200 FLLGLGLGPVGIYIRSRLND-PGFPADERLGECAPVVEVVRSFS-------REALVGFGL 251 Query: 14954 VLIFNVTDYMALSYLPSYLSATLHVRESHGXXXXXXXXXXXXXXXXYAGHLSDKVGRKPV 15133 V+ + V Y+ L Y+P+Y S L + S G GHLSD GR+ Sbjct: 252 VVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLFGRRWF 311 Query: 15134 MMAGCVGLLALSVPAL-MLIRTGGTLPIFGGMLIYGVLLSTFTGVMPSALPALFPTRIRY 15310 + + + + P ML G + +++G++++++ G + +AL +FP + Sbjct: 312 LAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFPDGVLS 371 Query: 15311 GALAIGFNVSVSLFGGTTPLVTAWLVDRTGDLMMPAYYLMGASFIGIVSV 15460 ++I +N++V FGG + + W + T + + PA+Y++ A+ + ++SV Sbjct: 372 TGISISYNLAVITFGGFSAAIITWAIATTHNNLAPAFYVIAAAIVSLISV 421 Score = 204 bits (520), Expect = 2e-51 Identities = 123/413 (29%), Positives = 200/413 (48%), Gaps = 5/413 (1%) Frame = +3 Query: 189570 RVAIAAAALGNATEWFDYGIYAYGLAYISAALFPGNTASATLF-ALGTFAISFLIRPLGG 189746 R A+ A +GN EWFD+ Y++ I+ FP + +L ++ T + F +RP+GG Sbjct: 20 RRAVIAVIVGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLLSVSTIGVGFFMRPIGG 79 Query: 189747 LFWGPLGDRLGRKRVLGLTVLTMSGATLLVGVLPSYATAGWLAPAALIVLRMVQGFSTGG 189926 + G + D++GR+ L +T+ M+ T ++G P+Y AG AP ++V R++QGFS GG Sbjct: 80 IVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGG 139 Query: 189927 EYGGAATFIAEYAPDSRRGLCGSFLEFATXXXXXXXXXXXXXXXXXXXDSAMHAWGWRLP 190106 E GGA ++ E P R G S+++ + + + +WGWR+P Sbjct: 140 EMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWRIP 199 Query: 190107 FLVAAPLGLIGFYLRSRLEET--PVFRELEEQAHRREKSATAALPIRLLLVRYAKPXXXX 190280 FL+ LG +G Y+RSRL + P L E A P+ ++ +++ Sbjct: 200 FLLGLGLGPVGIYIRSRLNDPGFPADERLGECA-----------PVVEVVRSFSREALVG 248 Query: 190281 XXXXXXXXXXXXXXXXXMPTYMHKELGVSENMSLLIPLIGMLAMMVLLPFAGWLSDRVGR 190460 +PTY K L + + + L+G ++ + P G LSD GR Sbjct: 249 FGLVVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLFGR 308 Query: 190461 KTMWWFSLVGLFVAAVPMFTLMTHGP-LGAFIGF-AVLGVLYVPQLATISAMFPAMFPTH 190634 + +L+ VAA P+F ++ P L + F V G++ I A MFP Sbjct: 309 RWFLAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFPDG 368 Query: 190635 VRYAGMAIAYNVSTSLFGGTAPIVNDWLIGKTGNALIPAYYMMAACAVGLIAL 190793 V G++I+YN++ FGG + + W I T N L PA+Y++AA V LI++ Sbjct: 369 VLSTGISISYNLAVITFGGFSAAIITWAIATTHNNLAPAFYVIAAAIVSLISV 421 >ref|NP_945089.1|gp58 Length = 297 Score = 115 bits (287), Expect = 3e-24 Identities = 83/300 (27%), Positives = 136/300 (45%), Gaps = 3/300 (1%) Frame = -3 Query: 17603 RLRSLPSLDFLRGFECAARHLSFTRAGQELNVTQSAVSRQVKALEEQLRIELFHRHIRSL 17424 +++ LP L L F+ AARH +FTRA +ELNV Q AVS+QV LE L LF R ++L Sbjct: 2 KIQPLPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKAL 61 Query: 17423 TLTDKGRELYDAISFALSDLESVVGKLSSSVGQRSISLSTTVSFAALWLIPRLGSFRASY 17244 LT G++ D + L+D + S++++ A L+L R+ F A + Sbjct: 62 HLTRAGQQYADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEH 121 Query: 17243 PDIDVRVSATSEIEDLKRKRLHLAVRYAG--PYTSTDDTDVLFRERVVAVCSPSLMTAAG 17070 P++ VR+ + +L + V Y P T ++ E V A C+P+ + Sbjct: 122 PEVSVRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIV-AEDVHAYCAPTFLA--- 177 Query: 17069 DAASMQPAXXXXXXXXXXXDPRGEW-PWHGWSHLLKALGVPRLRPAGALHFSQYDQLVQA 16893 + P + + +W W W L +G RPA + + Y L+Q Sbjct: 178 -GRRVPPQDLMEATLLVAEEQQRQWMGWRDWFRL--TVGEIGFRPARTISANSYPVLLQL 234 Query: 16892 AVDGHGIAIGRRPLVDGLLRQGRLVELFPHCTVASGSYVLVQNPDACNEFDIAVLTNWLL 16713 A+ GHG +G + ++ L+ G+LV G+Y ++ D + + + WLL Sbjct: 235 ALHGHGAILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLL 294 Score = 114 bits (284), Expect = 6e-24 Identities = 87/293 (29%), Positives = 139/293 (47%), Gaps = 6/293 (2%) Frame = +1 Query: 181102 PSMSLLLVFEAAARHESYTRAAEELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEV 181281 P + L+ F+AAARH ++TRAAEEL+++Q A+S+QV LE LG LF R+ +++ LT Sbjct: 7 PPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRA 66 Query: 181282 GRRYFAELSGALGRIRGATLQAMSHQAGAGTLRLATLPTFGSKWLLPHLHGFYAAHPGVT 181461 G++Y + L AT M Q +L +A + +L + F A HP V+ Sbjct: 67 GQQYADRVHAILADCVEATALVMKEQT-PHSLTIACASGTATLFLADRIAEFSAEHPEVS 125 Query: 181462 VHLHSRIGAIDFLHDDLDAAI-TVGAGDWPGLHAHRLYNEFLIAIAPPDTGRGRKADART 181638 V + R G + + D + + PG+ + E + A P GR+ Sbjct: 126 VRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRV---P 182 Query: 181639 PAWAARQTLLGVTSNQQAWAEWFSHYRLEHRQMRIGPSFELTSH----LIQAVRAGMGIG 181806 P TLL Q+ W W +RL ++ P+ ++++ L+Q G G Sbjct: 183 PQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAI 242 Query: 181807 LVPKVLVEDELSRGELVPIGDAITS-QRSYYLVYPPGNETLPSLVAFREWLLT 181962 L K ++ + G+LV DA S +Y +++P P++ FREWLLT Sbjct: 243 LGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLLT 295 Score = 100 bits (250), Expect = 5e-20 Identities = 78/257 (30%), Positives = 115/257 (44%), Gaps = 7/257 (2%) Frame = -1 Query: 233320 LPPLNSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLEAWLGRPLFERHNRRVELTA 233141 LPPL L F+AAAR G+FT AA+EL V GA+S+ V +LE +LG LF R + + LT Sbjct: 6 LPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTR 65 Query: 233140 AGRAYLAEVGASFDRIALATAQHFGHAQQRVLRVSAPATFSLRWLVPKLSSFQVAHPAIE 232961 AG+ Y V A ATA L ++ + + +L +++ F HP + Sbjct: 66 AGQQYADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVS 125 Query: 232960 VRLSTSNEPIDKLRDKVDL---IVRGGPQAIDGYVAEEFLSEVRLPVCAPKLLEGRSLDT 232790 VR+ + + D+ +R P G ++E CAP L GR + Sbjct: 126 VRILVREGVFNLNAAEFDIGVYYIRDVPP--PGIAGTAIVAEDVHAYCAPTFLAGRRV-P 182 Query: 232789 PADLAGFTLLHAATYPGMWPEW----LAAAGHPNLVPRHSLTLEHFYLTLQGALDGLGVA 232622 P DL TLL A W W G P +++ + + LQ AL G G Sbjct: 183 PQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAI 242 Query: 232621 MGPIALVADDIAEGRLV 232571 +G ++ + G+LV Sbjct: 243 LGWKHMITPLVESGKLV 259 Score = 78.6 bits (192), Expect = 3e-13 Identities = 81/293 (27%), Positives = 115/293 (39%), Gaps = 7/293 (2%) Frame = -2 Query: 58536 LPSLMALRCFDAAARHEHFGRAADELCLTHGAVSRAVRLLENDLGVALFERRSRRVFLTE 58357 LP L L FDAAARH +F RAA+EL + GAVS+ V LE LG LF R ++ + LT Sbjct: 6 LPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTR 65 Query: 58356 AGRTLARAVHDGLGLMXXXXXXXXXXXXXXXRSVLSCEPTLLMRWLIPRWPDFQARHAGV 58177 AG+ A VH L ++ +C +L R +F A H V Sbjct: 66 AGQQYADRVHAILADCVEATALVMKEQTPHSLTI-ACASGTATLFLADRIAEFSAEHPEV 124 Query: 58176 DIHLAAAGGPFSFDSG-IDMAIRRNDFAWPAGYHAEHLFAERVGPVCRPDKVGAWFASRR 58000 + + G F+ ++ D+ + P G + AE V C P + A RR Sbjct: 125 SVRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAP----TFLAGRR 180 Query: 57999 GGRALKPDAALLHTRTRPD-----XXXXXXXXXXXXXXNGRGQRFDHFYFSLQAAVAGLG 57835 +A LL + R + + LQ A+ G G Sbjct: 181 VPPQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHG 240 Query: 57834 VAIGPWHLVRDDIESGVLV-APMGFVEDGSDYYLLTPAPVAEGSAQAALLAWL 57679 +G H++ +ESG LV A G Y ++ PA + A WL Sbjct: 241 AILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWL 293 Score = 71.2 bits (173), Expect = 4e-11 Identities = 77/304 (25%), Positives = 128/304 (42%), Gaps = 13/304 (4%) Frame = +2 Query: 11675 PMLDLNDLALFVQVVRAGSFSEAARRLRMPANTLSRRIDQFEGHIGTRLLHRSTRKLAPS 11854 P+ L L F R G+F+ AA L + +S+++ + E +GT L R + L + Sbjct: 5 PLPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLT 64 Query: 11855 TEGLALFERYAPALDRIFEIERQHADGQEPAGTVRVAAMAGLFEVIKLEWLAEFYARYPR 12034 G +R L E Q P ++ +A +G + + +AEF A +P Sbjct: 65 RAGQQYADRVHAILADCVEATALVMKEQTP-HSLTIACASGTATLFLADRIAEFSAEHPE 123 Query: 12035 ISIDFLLDDTPSDLIAERIDLALRIGIETGGSFRVRRIAP----GTMILA------ASPA 12184 +S+ L+ + +L A D+ G + +R + P GT I+A +P Sbjct: 124 VSVRILVREGVFNLNAAEFDI---------GVYYIRDVPPPGIAGTAIVAEDVHAYCAPT 174 Query: 12185 YLERRGTPRTPRELADHDCLTVSSRQGRSM-WRLQGPRGTQEISI--DSRFSVNDMRVVM 12355 +L R P P++L + L +Q + M WR EI S N V++ Sbjct: 175 FLAGRRVP--PQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLL 232 Query: 12356 QACLAGLGIALVPQVLAAAAIDEGKLARVLPAYQRSGAGLGLQLVYTSRPPLPPAVTAVA 12535 Q L G G L + + ++ GKL VL + + G Q+++ + PAVT Sbjct: 233 QLALHGHGAILGWKHMITPLVESGKL--VLASDAHASFGGAYQVIWPADRRDTPAVTMFR 290 Query: 12536 EFLL 12547 E+LL Sbjct: 291 EWLL 294 Score = 69.3 bits (168), Expect = 2e-10 Identities = 42/146 (28%), Positives = 69/146 (47%) Frame = -3 Query: 174548 PRPPLASLETVCTVAREGSFLAAADVSGVTHGAISRRVAAVENWLGMALFERHARGVRLT 174369 P PPL L AR G+F AA+ V GA+S++V +E +LG LF R A+ + LT Sbjct: 5 PLPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLT 64 Query: 174368 PDGQRFVGRIEQAFAIIDGAADQWRSPRTPRLVRMSVVPAFAQLWLLERQPALESEAPAL 174189 GQ++ R+ A A +TP + ++ A L+L +R +E P + Sbjct: 65 RAGQQYADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEV 124 Query: 174188 RIELGIELRNVDIAGGEADLSIRYGR 174111 + + + ++ E D+ + Y R Sbjct: 125 SVRILVREGVFNLNAAEFDIGVYYIR 150 Score = 68.6 bits (166), Expect = 3e-10 Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 1/145 (0%) Frame = +2 Query: 73034 IPSNSALLAFEXXXXXXXXXXXXDELARTEGAVSRQIGRLEAFLGVTLFERVGNRVRLAP 73213 +P L+ F+ +EL +GAVS+Q+ +LE FLG TLF R + L Sbjct: 6 LPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTR 65 Query: 73214 NGTRYAVQVREIL-DRLERDSLYLMGQPVEGASIDIAAIPTFATRWLIPRLKRFQDRHPN 73390 G +YA +V IL D +E +L + Q S+ IA AT +L R+ F HP Sbjct: 66 AGQQYADRVHAILADCVEATALVMKEQTPH--SLTIACASGTATLFLADRIAEFSAEHPE 123 Query: 73391 VTVHIAERMEPFLLAGSGFDAAIHF 73465 V+V I R F L + FD +++ Sbjct: 124 VSVRILVREGVFNLNAAEFDIGVYY 148 Score = 67.4 bits (163), Expect = 6e-10 Identities = 69/273 (25%), Positives = 121/273 (44%), Gaps = 5/273 (1%) Frame = -1 Query: 159145 LRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTESGQEFY 158966 L F A G+FT AA++L +++ VS++ + LE LG L R+ + L +T +GQ++ Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71 Query: 158965 VRAQRILAEIADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAVRLNLD 158786 R ILA+ +A A+ ++ H SL I+ ++ IAEF + HP V + + Sbjct: 72 DRVHAILADCVEA-TALVMKEQTPH-SLTIACASGTATLFLADRIAEFSAEHPEVSVRIL 129 Query: 158785 LTDRRVDLIGEGFDL-VLRIGSLEDSTLIARPLGAWRMIACASPAYLKRHGTPQTPADLA 158609 + + +L FD+ V I + + + A + A +P +L P P DL Sbjct: 130 VREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVP--PQDLM 187 Query: 158608 GHTCVLYGRERR--VGWE--FRVDGAVRTFDVQGPLVANNGEVVRDXXXXXXXXXXLPHF 158441 T ++ ++R +GW FR+ F + AN+ V+ Sbjct: 188 EATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAILGWKH 247 Query: 158440 IVGAALDSGALVPVLDAYVPPPITLNAVFPQHR 158342 ++ ++SG LV DA+ ++P R Sbjct: 248 MITPLVESGKLVLASDAHASFGGAYQVIWPADR 280 Score = 57.4 bits (137), Expect = 6e-07 Identities = 35/108 (32%), Positives = 57/108 (52%) Frame = -1 Query: 182788 GSFAQGAQAVHRSPSAVSMQIRTLEDALGKPLFIRDTRNVTPTDDGRMLADYGRRMLAMR 182609 G+F + A+ ++ + AVS Q+ LE LG LF+RD + + T G+ AD +LA Sbjct: 22 GNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHAILADC 81 Query: 182608 DEAWASVVRPEIRGRVTIGVPDDYISSLLPQVLGKFAAMHPRVEVRVI 182465 EA A V++ + +TI + L + +F+A HP V VR++ Sbjct: 82 VEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRIL 129 Score = 55.1 bits (131), Expect = 3e-06 Identities = 38/120 (31%), Positives = 60/120 (50%) Frame = +2 Query: 85958 LQYFIAVAEEEHVGRAAERLHISQSPLSRQIAQLEEKLGLTLFERSQQRIRLTRDGRTFL 86137 L +F A A + RAAE L+++Q +S+Q+ +LE LG TLF R + + LTR G+ + Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71 Query: 86138 SEAHAFLRHANRLESLARRLGRGDEGGLCIGYLETATHSGVLPRALKTLRAERPSVHIAL 86317 HA L A+ +E+ A + L I + T + L + AE P V + + Sbjct: 72 DRVHAIL--ADCVEATALVMKEQTPHSLTIA-CASGTATLFLADRIAEFSAEHPEVSVRI 128 Score = 53.1 bits (126), Expect = 1e-05 Identities = 40/138 (28%), Positives = 58/138 (42%) Frame = +1 Query: 238915 LQSIRAFVTVAREGGFRRAATRLRVSTAMASRLVDALETRLGARLLQRSTSHQSLTEIGE 239094 LQ + F AR G F RAA L V+ S+ V LET LG L R LT G+ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 239095 LYLARVERILGAIDEIDGRFVAMGSKPEGVLRVAAPVAFGLSQLSALLDRFVHRFPDVRP 239274 Y RV IL D ++ + M + L +A L+ + F P+V Sbjct: 69 QYADRVHAILA--DCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 239275 TVTLTDAHVDLTAEDIDV 239328 + + + +L A + D+ Sbjct: 127 RILVREGVFNLNAAEFDI 144 Score = 48.1 bits (113), Expect = 4e-04 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 2/186 (1%) Frame = -2 Query: 81786 FRAVMQRHTVTRAARDLHISQPAVSRLIADLEDRVGFVLFERQQGRFTPTAQARVLYEEV 81607 F A + TRAA +L+++Q AVS+ + LE +G LF R T + + V Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRV 74 Query: 81606 ERAFVGLDRVAQAAEQIRAMRRGTLRVAGSPAVALDLLPQLVTRFSHAHPGVDITLLAHS 81427 D V A ++ +L +A + A L + FS HP V + +L Sbjct: 75 HAILA--DCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILVRE 132 Query: 81426 ASTVVDKVASGQCDVGL-IAEPVPHPAVRGERL-AESAMRCIVPRGHRLARKRVVRPADL 81253 V + + + D+G+ VP P + G + AE P LA +R V P DL Sbjct: 133 G---VFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPT--FLAGRR-VPPQDL 186 Query: 81252 RDEAFI 81235 + + Sbjct: 187 MEATLL 192 Score = 47.8 bits (112), Expect = 5e-04 Identities = 36/135 (26%), Positives = 58/135 (42%) Frame = -1 Query: 74869 LDALLIFARVAEMASFTRAAESLGIQKGRVSTVVRTLERDMGVALLHRTTRRVQLTEDGR 74690 L L+ F A +FTRAAE L + +G VS V LE +G L R + + LT G+ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 74689 AFYARATDLLAEVQELQSMFXXXXXXXXXXXRVDMPTELARSVVVPALPQLMAAHPDLEL 74510 + R +LA+ E ++ + + A + + + A HP++ + Sbjct: 69 QYADRVHAILADCVEATAL--VMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 74509 ELSSTDRRVDLVREG 74465 + LVREG Sbjct: 127 RI--------LVREG 133 Score = 46.2 bits (108), Expect = 0.001 Identities = 37/177 (20%), Positives = 68/177 (38%) Frame = +1 Query: 235081 LQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLEXXXXXXXXXXXXXXIALTDAGQ 235260 LQ + F A G+FT AA+ L++ S+ V +LE + LT AGQ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 235261 RYLDRCQRILGYIXXXXXXXXXXXXKPSGRLHVHATTSFGQSYVMPAVVRYRERYPSVAV 235440 +Y DR IL S L + + ++ + + +P V+V Sbjct: 69 QYADRVHAILADCVEATALVMKEQTPHS--LTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 235441 ELTLSQHVPDIIDEGYDVSLQLSTTELPDSGLVSQRLGDVGSVLCASPAYLKARGTP 235611 + + + V ++ +D+ + ++P G+ + +P +L R P Sbjct: 127 RILVREGVFNLNAAEFDIGVYY-IRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVP 182 Score = 44.3 bits (103), Expect = 0.005 Identities = 34/99 (34%), Positives = 49/99 (49%) Frame = +2 Query: 60137 FVAVADVRSFTGAGRRLNLSQSAVSAQIVRLEEQVGQALLARNTRSVTLTGHGETLLGYA 60316 F A A +FT A LN++Q AVS Q+V+LE +G L R+ +++ LT G+ Sbjct: 15 FDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRV 74 Query: 60317 RAMLNLSEEARARLGTGDAIDVKLRIGVSEDFATGWLPD 60433 A+L EA A L + L I + AT +L D Sbjct: 75 HAILADCVEATA-LVMKEQTPHSLTIACASGTATLFLAD 112 >ref|NP_046572.1|ABC transporter Length = 705 Score = 103 bits (258), Expect = 6e-21 Identities = 105/462 (22%), Positives = 204/462 (44%), Gaps = 10/462 (2%) Frame = +2 Query: 167348 LSFYANEFAGRVTTKIMQTALAVRDALFMSVDVVIGVT--AYLIGILVLAASFDWRLMIP 167521 ++F+ N G V ++ + ++D F S + V + ++G+ V+ + L + Sbjct: 254 INFFENREDGEVISRF-NDGIYIKD--FFSANFVTAIIDIILILGLGVILYRTNNILFLT 310 Query: 167522 LALWALGYGAACAYFVPRLGAVGSRQADARALMTGRITDAYSNITTVKLFSHTRREADHA 167701 + L L F L + + +A T + + N+TTV + T Sbjct: 311 IILPILLLSCLAILFFDHLKKKNQKLMEDKAKSTSLLINFLKNMTTVYSLNKTSF----- 365 Query: 167702 RRAMEAFKATGDAQMRLVSAFEIVNHLLSTLLLIG---SAGLALVLWMHGEASAGVVAAV 167872 +E F T D Q+ S F + ++S +L G ++ ++LW+ G + Sbjct: 366 --FLEKFHLTYDKQLN--STFSVAKAVISNEILKGLIQNSFTIIILWV-GTRQVLNDSMS 420 Query: 167873 IAMALRLSSYSHWIMWEMTELFENVGTIQDGINTLTKVRSVIDAPDAKPLTVRRGEIVF- 168049 + L +++ + +++ + + +Q + V++ P + E+ F Sbjct: 421 LGTLLFINTLAAFLLSSLDRILSMQSDLQQAHVASIRFFDVVNYPVQQDSNENLTELDFI 480 Query: 168050 DNVQFAH----EDNDRAVFDGLNLTIRPGERIGLIGRSGAGKSTLVNLLLRFYDVGGGSI 168217 N++ + D R + + +NL + +++ +IG SG GKST L + Y V SI Sbjct: 481 QNIKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSI 540 Query: 168218 RIDGQDIAHVTQDSLRAAIGMVTQDTSLLHRTMRENLLYGRPDATEREMQDAAVRAEASE 168397 ++G DI S+R I + ++ L T++ENL G + E+++A + ++ E Sbjct: 541 YLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGE-IFDQNEIENACIMSQCHE 599 Query: 168398 FIGRLRDRHGRSGYDVEVGERGVKLSGGQRQRVAIARVMLKDAPILVLDEATSALDSEVE 168577 FI L + Y ++ E G LS GQ+QR+A+AR +L +L+LDE+ S +D + Sbjct: 600 FICNLDKQ-----YSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNT 654 Query: 168578 VAIQRSLDTLMSGKTVIAIAHRLSTIAAMDRLIVLDEGRIVE 168703 I +L + +I I H + ++ +V RI+E Sbjct: 655 KLIYETLHRM--DCLIILITHNDPSNFKYNKKLVFRNNRIIE 694 Score = 57.4 bits (137), Expect = 6e-07 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 8/199 (4%) Frame = -3 Query: 138734 HVLKGISLDAHEGDVISILGASGSGKSTFLRCLNLLETPDDGSVALAGEELAMKRARDGK 138555 ++++ I+L D + I+G SG+GKSTF + L+ L D S+ L G ++ Sbjct: 497 YIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDI--------- 547 Query: 138554 LHPSDRRQVDRIRSQLGMVFQNFNLWSHMTVLDNLVEGPLRVQKRSXXXXXXXXXXXXXX 138375 +R IR ++ + +N L+ T+ +NL G + Q Sbjct: 548 ----NRYDHLSIRKRIVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFIC 602 Query: 138374 VGLADKRGYYP-----AHLSGGQQQRVAIARALAMHPKVMLFDEPTSALDPE---LVGEV 138219 DK+ Y ++LS GQ+QR+A+ARA+ P+V++ DE S +DP+ L+ E Sbjct: 603 N--LDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYET 660 Query: 138218 LRVMRSLAEEGRTMLVVTH 138162 L M L ++++TH Sbjct: 661 LHRMDCL------IILITH 673 Score = 55.1 bits (131), Expect = 3e-06 Identities = 44/183 (24%), Positives = 92/183 (50%), Gaps = 9/183 (4%) Frame = -1 Query: 113641 HVLQGISLNVNEGETVTLLGRNGAGKSTTLKTIAGVVAPTGGTVTFEGRPVAGQPAHRIA 113462 ++++ I+L ++ + V ++G +G GKST K+++ + ++ G + + H Sbjct: 497 YIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDI-NRYDHLSI 555 Query: 113461 AGGLCFVPEHRGIFRLLSVEENLRLGARRDS--------PWQLDE-IYRIFPRLKERRRN 113309 + ++ E+ +F+ +++ENL +G D Q E I + + + Sbjct: 556 RKRIVYIDENPFLFK-GTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSE 614 Query: 113308 GGAQLSGGEQQMLAIGRALMNHPRLLMLDEPVEGLAPVIVEEIVEQLKRIKAAGVAILLV 113129 G+ LS G++Q LA+ RA+++ P++L+LDE + + P + I E L R+ I+L+ Sbjct: 615 NGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDC---LIILI 671 Query: 113128 EQN 113120 N Sbjct: 672 THN 674 Score = 47.0 bits (110), Expect = 8e-04 Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 5/177 (2%) Frame = -2 Query: 114345 VIGPNGAGKTTLFHTLTGTLPITSGSILFDGHDVSHEPDHKRVRRGIARSFQVTSLFPNL 114166 +IG +G GK+T +L+ + SI +G D++ DH +R+ I + LF Sbjct: 514 IIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRY-DHLSIRKRIVYIDENPFLFKG- 571 Query: 114165 SVRENLRVA----AQGVESRRALNPWTPPRGALAHDGVVDDVLERLGLQRFADTAAGVLS 113998 +++ENL + +E+ ++ H+ + + L++ + ++ + LS Sbjct: 572 TIKENLCMGEIFDQNEIENACIMSQ--------CHEFICN--LDKQYSYKLSENGSN-LS 620 Query: 113997 HGQQRRLEVGMALAARPRAIFLDEPTSGMGIDDLDDMKALIRGL-RDDYTVVLIEHN 113830 GQ++RL + A+ +P+ + LDE S + D D+ K + L R D ++LI HN Sbjct: 621 TGQKQRLALARAILHQPQVLILDESLSNI---DPDNTKLIYETLHRMDCLIILITHN 674 Score = 45.8 bits (107), Expect = 0.002 Identities = 23/86 (26%), Positives = 49/86 (56%) Frame = +2 Query: 127862 LSGGQQQRIGVIRALAADPPVLLMDEPFGAVDPINRESIQNEFFQMQRQLNKTVIMVSHD 128041 LS GQ+QR+ + RA+ P VL++DE +DP N + I ++ +++ +I+++H+ Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLI----YETLHRMDCLIILITHN 674 Query: 128042 IDEAIKLGDRIAVFRRGQLVQYDHPD 128119 K ++ VFR ++++ + + Sbjct: 675 DPSNFKYNKKL-VFRNNRIIESSYSE 699 Score = 43.9 bits (102), Expect = 0.007 Identities = 23/80 (28%), Positives = 44/80 (55%) Frame = +1 Query: 127507 VDSVSLSVPEGEICVFLGPSGCGKTTTLKMINRLIAATSGRVLINGEDTAQLDEVDLRRH 127686 V+ ++L + + + +G SG GK+T K +++L + +NG D + D + +R+ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 127687 IGYVIQQIGLFPNMTIEENI 127746 I Y+ + LF TI+EN+ Sbjct: 559 IVYIDENPFLFKG-TIKENL 577 >ref|NP_758949.1|ORF58 Length = 210 Score = 88.6 bits (218), Expect = 3e-16 Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 1/168 (0%) Frame = +1 Query: 226387 MAFKIAVSNQKGGTGKTTISVNIAAAFEAGGNKVALIDADPQGTSVRWVTSGENTLPMTV 226566 MA IA+ NQKGG GKTTIS N+A+ A G+KV L+D DPQG++ W E Sbjct: 19 MAKLIAILNQKGGAGKTTISTNVASQLHADGHKVLLVDLDPQGSATDWSEQAEE--GSEA 76 Query: 226567 LSLAPAGRGIGGEIKKQDANFDVIV-VDCPGNLEDPRIASVLEVADFCLVPLSPSPADLY 226743 + + G+ +I K + ++ +V VD + D A+ + AD L+P PSP D + Sbjct: 77 VPVIRMGKTCTCDIHKVASGYEYLVSVDGAPQVAD-LAATAVRAADMVLIPTQPSPYDCW 135 Query: 226744 STVAMIRMIESMRAVRNPQLSSALMLNSVNGKTKMREEILKILRAEEI 226887 S ++ ++++ + V + +A +++ +TK+ EI + L E+ Sbjct: 136 SAAELVEIVKARQEVTDGIPKAAFIISRAIKRTKLEAEIKEALDYYEL 183 >ref|NP_818300.1|gp250 Length = 442 Score = 85.1 bits (209), Expect = 3e-15 Identities = 99/351 (28%), Positives = 151/351 (43%), Gaps = 24/351 (6%) Frame = +1 Query: 233485 VVVGAQWGDEGKGRVVDWLAA--QADLVARYNGGHNAGHTLVV-GGNTYKLALLPSGIVR 233655 +V +GD GKG VDWL + LV R+NGG AGH +V+ G ++ + S + Sbjct: 8 IVTDLGYGDAGKGTTVDWLCGGDPSTLVVRHNGGSQAGHNVVLDDGTHHEFSQFGSAFLH 67 Query: 233656 GKRGVIGNGVALDPEALLAEIGRMAELGLPVTPDNLS---IAENATLVLPIHRAIDEAQE 233826 G + V ++P ++ E + E+ T D LS + A +V P H A+ + Sbjct: 68 GAVTFLSRYVMVNPLDMIEEAKHLDEVSQLETTDALSMMFVDAQAKVVTPYHVALQRLKA 127 Query: 233827 RLRREPIGTTLRGIGPAYEDKVGRRGL--RVG---DLAEPDGLAAKLDVLVDHHNAWFRG 233991 R G+ +GIG A + L RVG DL+ L L++ + R Sbjct: 128 YARG---GSCGKGIGEAVRQHLAMPNLTIRVGHLRDLSLRTSLEQLRHYLLNAADVAGRR 184 Query: 233992 LGLDEY-DRDAMLATLVA--LAPKILPFVRPV--------WADLNDATDRGERILFEGSQ 234138 D + DR + ++ LA + + + V W L G ++FEG+Q Sbjct: 185 EDDDSFIDRTVLEDRFLSSHLAERYYAWTKRVGIVDDGDTW--LGRYLRGGHTVIFEGAQ 242 Query: 234139 AVMLDIDWGTYPFXXXXXXXXXXXXXXXXXXXXXXXHV-LGVTKAYATRVGGGPFLTELT 234315 V+LD G +P+ + LGV ++YATR G GPF+TE Sbjct: 243 GVLLDEWAGFHPYTTWSTTTPQNALALTTAARSQVAPINLGVVRSYATRHGNGPFVTE-- 300 Query: 234316 DATGETLRARGQEFGVNTGRPRRCGWLDAAQLRQAVRISG-IDSLALTKLD 234465 D + E G+ G+ R+ G LD LR A + G +D L +T LD Sbjct: 301 DPELDFDEPHNHE-GMWQGKFRQ-GHLDLVALRYAASVCGQLDGLVVTHLD 349 >ref|NP_818239.1|gp188 Length = 318 Score = 72.4 bits (176), Expect = 2e-11 Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 2/206 (0%) Frame = -3 Query: 121136 GRPAGETEAQFTRHLLDEIESLIVQEGPDTVAAIVVEPLQNAGGSLTPPAGYAAGLRDIC 120957 GR AG FT+ + SLI +EG +V++ + A S Sbjct: 93 GRDAGAVA--FTQFPNWSLVSLIDREGRLVAPEVVLDEVDRATKS--------------- 135 Query: 120956 DRHGVLLVADEVICGFGRLGEYFGSARYGLKPDIITFAKGIASGYVPLGGVIASDAVVDT 120777 G +VADE GFGRLG +G YG PD I F G A G + LGGVI ++D Sbjct: 136 ---GRTVVADESATGFGRLGRIWGHQAYGFTPDAIIFG-GPAGGGLTLGGVIGPAELLDD 191 Query: 120776 VLDGPQQMFLHGATYGGHPVACTAALANLVIMEREGVLANVRDNEAVFRQTLDGLLEL-- 120603 GP G P+AC A L + E +L +VR+ F + L L++ Sbjct: 192 AFVGPM---------AGAPLACATGAATLAAINPE-LLEHVREEGVTFGERLRALVDRFG 241 Query: 120602 PCVGDVRGDGYHYSLELVTDKAARRW 120525 + D G G +++L+ + + AR++ Sbjct: 242 DYLADTAGSGLYHTLDFRSPQLARKF 267 Score = 43.5 bits (101), Expect = 0.009 Identities = 61/286 (21%), Positives = 106/286 (37%), Gaps = 19/286 (6%) Frame = -1 Query: 196021 HWYRKAPAGMSEAQFVAYCVDELEKLIAREGADTVAAFIAEPVMGTGGIIEPPAGYWPAI 195842 ++ R PA A++ +L + R AD++ AE G + W + Sbjct: 51 YYVRTGPASGHVARWPVEYARKLIDSLERPDADSLRVLYAEGGRDAGAVAFTQFPNWSLV 110 Query: 195841 QAVLRKHDIL------------------LISDEVVCGFGRLGSKMGAQHFGIEPDLITVA 195716 + R+ ++ +++DE GFGRLG G Q +G PD I + Sbjct: 111 SLIDREGRLVAPEVVLDEVDRATKSGRTVVADESATGFGRLGRIWGHQAYGFTPDAI-IF 169 Query: 195715 KGLTSAYAPLSGVIVGEKVWDVIARGSQEHGPMGHGWTYSGHPVCXXXXXXXXXXLEREN 195536 G L GVI ++ D GPM +G P+ + E Sbjct: 170 GGPAGGGLTLGGVIGPAELLD-----DAFVGPM------AGAPLACATGAATLAAINPE- 217 Query: 195535 LVGNAEEVGKYFGAKLRDAFDAH-PLVGEVRSVGMLAALEFMADKDARVPFDPSLKIGAQ 195359 L+ + E G FG +LR D + + G+ L+F + + AR + Sbjct: 218 LLEHVREEGVTFGERLRALVDRFGDYLADTAGSGLYHTLDFRSPQLAR-----------K 266 Query: 195358 VSAAALQRGVIARAMPHGDILGFAPPLVMTREEADEIVGIVKKAVD 195221 + Q G++ A P G + P L+ + E V ++ + ++ Sbjct: 267 FEVSTRQHGLLT-APPVGSTVVVTPTLIASERELARGVELIAETLE 311 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 68.2 bits (165), Expect = 4e-10 Identities = 69/252 (27%), Positives = 100/252 (39%), Gaps = 5/252 (1%) Frame = +3 Query: 67764 IFFHHGWPLSADDWDAQMLFFLAQGYRVIAHDRRGHGRSSQVWDGHDMDHYADDVAAVVN 67943 + F HG +SA ++ + G+RVIA D HGRS + GH ++ ++ Sbjct: 25 LVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTGHTVEDMTRVTLKTLD 84 Query: 67944 HLGVQGAVHVGHSTGGGEVIHYVARHGEDRVAKAVLISAVPPLMVKTDSNPGGLPKDVFD 68123 L + A+ GHS GGG V+ ARH RVA AVL+ A + G F Sbjct: 85 ELDIHRAIFAGHSMGGGMVVEIAARH-PHRVAAAVLLDAAAGQEHHDNIKVGHYATLAFR 143 Query: 68124 XXXXXXXXXXXXFYYDVPAGPFYGYNRTGSTPSQGVIWNWWRQGMMG--SAKAHYDGIVA 68297 G Y T + R + G +A + ++ Sbjct: 144 AAKKLGEAVTDI------VGDGYEAMHLRDTGEKLSFLGMLRDSVSGLRFVRAAF-ALMK 196 Query: 68298 FSQTDFTEDLKSTTIPVLVMHGDDDQIVPYADSGLLSAKLARNSTLKVYAGFPHGM---P 68468 T + +P V+HG DQIVPY ++GL +AK+ N++ GF M P Sbjct: 197 ADTTPLLHAMYRHGVPTAVLHGLHDQIVPY-EAGLSTAKIT-NASFYGVDGFHSWMLADP 254 Query: 68469 TSNADTINADLL 68504 AD I LL Sbjct: 255 ELAADLIALALL 266 Score = 63.9 bits (154), Expect = 7e-09 Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 2/139 (1%) Frame = -3 Query: 16433 GAGFPVLLGHSYLWDATMWAPQIDALSRR-YRVIVPDLWGHGESGALPDGTHTLDDLATQ 16257 G G P++ H A + + L+ +RVI D HG SG+LP G HT++D+ Sbjct: 20 GTGAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTG-HTVEDMTRV 78 Query: 16256 ASALLDALEIDQCAIVGLSVGGMWGARLALREPRRVRSLVIMDASLEAE-PDATRARYFG 16080 LD L+I + G S+GG +A R P RV + V++DA+ E D + ++ Sbjct: 79 TLKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDAAAGQEHHDNIKVGHYA 138 Query: 16079 MLDAIEAAGRIAPPLLDAI 16023 L A AA ++ + D + Sbjct: 139 TL-AFRAAKKLGEAVTDIV 156 Score = 58.9 bits (141), Expect = 2e-07 Identities = 64/262 (24%), Positives = 95/262 (36%), Gaps = 25/262 (9%) Frame = -1 Query: 104383 DGARIWHASFGRGPAVVXXXXXXXXXGNWGNQVPALLAAGYRAIVIDSCGHGRSTRDDRP 104204 DG R+ ++ G G +V + + L G+R I +D+ HGRS Sbjct: 10 DGFRVGVSTVGTGAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTG 69 Query: 104203 YSYERMASDVLAVLDALQVDRARFVGWSDGACIALVLAARAPER-AAGVLFFACSMDPGG 104027 ++ E M L LD L + RA F G S G + + +AAR P R AA VL A + Sbjct: 70 HTVEDMTRVTLKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDAAAGQEHH 129 Query: 104026 TK------------------EMAPSLLIDRCFARHRKDYAQ----LSATPDQFDA--FVA 103919 E ++ D A H +D + L D FV Sbjct: 130 DNIKVGHYATLAFRAAKKLGEAVTDIVGDGYEAMHLRDTGEKLSFLGMLRDSVSGLRFVR 189 Query: 103918 AVSEMMRTQPNYTAQDLAAIAVPVAIVQGEHDEFIRPEHAAYLARTIPGATLTILPGVSH 103739 A +M+ + VP A++ G HD+ + P A I A+ + G Sbjct: 190 AAFALMKADTTPLLHAMYRHGVPTAVLHGLHDQIV-PYEAGLSTAKITNASFYGVDGFHS 248 Query: 103738 FAPLQRPARFNAAMLAFLDRLP 103673 + + LA LD P Sbjct: 249 WMLADPELAADLIALALLDLFP 270 >ref|NP_818403.1|gp105 Length = 266 Score = 64.7 bits (156), Expect = 4e-09 Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 5/218 (2%) Frame = -3 Query: 163379 PVFVFIHGGGWVLGDFPTHERLVRDLVVQSGAVAVFVNYTPSPEARYPVAINQAYAATKW 163200 PVF+FI GG W +GD + +VQ G + V ++Y +P+ +P AA W Sbjct: 39 PVFMFIPGGAWTIGDRRGQGYAIMSHLVQQGWICVAIDYRTAPKNHWPAPFEDVSAAFHW 98 Query: 163199 VAAHGAEIGVDGSRLAVVGNSVGGNMSAVVALMAKDKGGPAIRFQGLMWPVTDHNFNTGS 163020 V A+ + G G LAV G S GG+M++++ L W + + Sbjct: 99 VRANIHQYG-GGDFLAVGGASAGGHMASLLGLTD--------------WSFSKPDAVVSL 143 Query: 163019 YNAYQQGHFLTRPMMKWFWDAYTKN-EAQRNEIYASPLRASVAQL-KGLPPALIQVAQFD 162846 Y Y + ++ + W + Y ++ R + + + + Q+ + PP LI D Sbjct: 144 YGVYD---WTSKSLDHWLINRYVQHVVVGRRDHDTLRISSPIHQIHRDAPPFLIIQGDCD 200 Query: 162845 VLRDEGEA--YGRKLDAAGVD-ATTTRYDGTIHDFGLL 162741 ++ + A + +KL ++ A R G IH F LL Sbjct: 201 LVTPQSGAKKFFKKLKETSLNHAVYHRVPGGIHGFDLL 238 >ref|NP_817650.1|gp61 Length = 274 Score = 62.4 bits (150), Expect = 2e-08 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 1/138 (0%) Frame = -3 Query: 16433 GAGFPVLLGHSYLWDATMWAPQIDALSRR-YRVIVPDLWGHGESGALPDGTHTLDDLATQ 16257 G G P++ H A + + L++R + V D HG + +LP G HT++++ Sbjct: 22 GTGVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFG-HTVEEMTRV 80 Query: 16256 ASALLDALEIDQCAIVGLSVGGMWGARLALREPRRVRSLVIMDASLEAEPDATRARYFGM 16077 LDAL IDQ VG S+GG A +A R P RV + +++DA+ A + + + Sbjct: 81 TLRALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILLDAA------AGKEHHANL 134 Query: 16076 LDAIEAAGRIAPPLLDAI 16023 D + A R++ ++D + Sbjct: 135 KDPLRATQRLSGAVVDVL 152 Score = 57.0 bits (136), Expect = 8e-07 Identities = 65/254 (25%), Positives = 96/254 (37%), Gaps = 5/254 (1%) Frame = +3 Query: 67764 IFFHHGWPLSADDWDAQMLFFLAQGYRVIAHDRRGHGRSSQVWDGHDMDHYADDVAAVVN 67943 + F HG +SA ++ ++ +G+ V A D HGR+ + GH ++ ++ Sbjct: 27 LVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFGHTVEEMTRVTLRALD 86 Query: 67944 HLGVQGAVHVGHSTGGGEVIHYVARHGEDRVAKAVLISAVPPLMVKTDSNPGGLPKDVFD 68123 LG+ AV VGHS GGG V R+ E RV A+L+ A G Sbjct: 87 ALGIDQAVFVGHSMGGGMVAEIAPRYPE-RVLAAILLDAA-----------AGKEHHANL 134 Query: 68124 XXXXXXXXXXXXFYYDVPAGPFYGYNRTGSTPSQGVIWNWWRQGMMG--SAKAHYDGIVA 68297 DV + +T G+ R G +A Y ++ Sbjct: 135 KDPLRATQRLSGAVVDVLGDTYQAIKLRSATEGLGLA-QTLRSSFAGFRFVRAAY-ALLK 192 Query: 68298 FSQTDFTEDLKSTTIPVLVMHGDDDQIVPYADSGLLSAKLARNSTLKVYAGFPHGM---P 68468 + +K+ + V+HG DQIVP+A SA A L GF M P Sbjct: 193 ADTEPLLKAMKALDVQTAVIHGLSDQIVPFAAG--KSAAEASGGALYAVEGFHSWMLADP 250 Query: 68469 TSNADTINADLLAF 68510 A+ I LL F Sbjct: 251 ELAAEVIVFALLGF 264 Score = 51.6 bits (122), Expect = 3e-05 Identities = 55/236 (23%), Positives = 86/236 (36%), Gaps = 24/236 (10%) Frame = -1 Query: 104383 DGARIWHASFGRGPAVVXXXXXXXXXGNWGNQVPALLAAGYRAIVIDSCGHGRSTRDDRP 104204 DG R+ + G G +V + + L G+ +D+ HGR+ Sbjct: 12 DGFRVGVSQVGTGVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFG 71 Query: 104203 YSYERMASDVLAVLDALQVDRARFVGWSDGACIALVLAARAPERAAGVLFFACSMDPGGT 104024 ++ E M L LDAL +D+A FVG S G + +A R PER + +D Sbjct: 72 HTVEEMTRVTLRALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAIL----LDAAAG 127 Query: 104023 KEMAPSLLIDRCFARHRKDYAQLSATPDQFDA------------------------FVAA 103916 KE +L D A R A + D + A FV A Sbjct: 128 KEHHANLK-DPLRATQRLSGAVVDVLGDTYQAIKLRSATEGLGLAQTLRSSFAGFRFVRA 186 Query: 103915 VSEMMRTQPNYTAQDLAAIAVPVAIVQGEHDEFIRPEHAAYLARTIPGATLTILPG 103748 +++ + + A+ V A++ G D+ + P A A G L + G Sbjct: 187 AYALLKADTEPLLKAMKALDVQTAVIHGLSDQIV-PFAAGKSAAEASGGALYAVEG 241 >ref|NP_795486.1|hypothetical protein Length = 374 Score = 57.8 bits (138), Expect = 5e-07 Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 1/173 (0%) Frame = -1 Query: 157567 LLIRAGLAHLWFVTLHPFDDGNGRIARALGDLVLARADRSPQRFYSLSAQIQRERNAYYD 157388 +L+R +AH F +HPF DGNGR+ R L L+ + + +S ++++ER YY+ Sbjct: 196 ILLRIAVAHAQFELIHPFLDGNGRLGRILIALMSVQEGLLKHPIFFVSEELEKERIRYYN 255 Query: 157387 VLERTQRGSLDVTEWLAWFLNTLGRAIDHAHTTLDAVLIKARFWQRCAGVAMNERQVKVM 157208 L T+ + D WL FLN + A L + ++ V + + Q V Sbjct: 256 ALNATRGENPDWNLWLNLFLNA---SEQMAKNILKKIRNADEHAKKGLSVCVTQTQKTVW 312 Query: 157207 NRLLDGFEGKLTTTKWAALA-KCSQDTALRDITELVEQGMLRRSASGGRSTSY 157052 L F ++T K A A + T + + LV +G+L + S R+ Y Sbjct: 313 ---LATFSFPVSTAKQLAEATEFHPATVKKALDFLVGEGLLDKDNSVKRNVPY 362 >ref|NP_665964.1|putative plasmid partitioning protein Soj Length = 256 Score = 53.9 bits (128), Expect = 7e-06 Identities = 54/259 (20%), Positives = 101/259 (38%), Gaps = 42/259 (16%) Frame = +1 Query: 226396 KIAVSNQKGGTGKTTISVNIAAAFEAGGNKVALIDADPQGTSVRWV------TSGENTLP 226557 +I V+NQKGG GKTT ++N+A A GN V +ID DPQG + + E Sbjct: 2 RIGVTNQKGGAGKTTTTLNVAGALNQLGNDVLVIDLDPQGHATEGLGFEDLYDDPERDSL 61 Query: 226558 MTVL--------------------------SLAPAGRGIGGEIKKQ----------DANF 226629 VL ++ A + +K++ D + Sbjct: 62 FDVLPELERMDELEQLVVEHQEVDCVPSHETMINAEDALANVMKREERLEMLLDDADGRW 121 Query: 226630 DVIVVDCPGNLEDPRIASVLEVADFCLVPLSPSPADLYSTVAMIRMIESMRAVRNPQLSS 226809 D ++VDCP NL +++ + L+P + + + + + S+ + P Sbjct: 122 DYVLVDCPPNLGVLTDNAIVATGN-VLIPAQAKSTSIRAIELLFKQLRSIESAFGPVDEL 180 Query: 226810 ALMLNSVNGKTKMREEILKILRAEEIGEHLLDSQIAQREVYRQTFALGTTIHHHNRYLKG 226989 AL+ N V + E + E E ++ +R ++ + G +I H Sbjct: 181 ALVANEVEVDGEADEMMAWFRDVFEDKEDCAVFEVRKRVALQRAWNNGVSIFEH------ 234 Query: 226990 LKEARAEIEKLVTEMAQYI 227046 E ++E + ++A+++ Sbjct: 235 --EEECDMESVYLDVARHL 251 >ref|YP_024984.1|adenylosuccinate synthetase Length = 343 Score = 48.9 bits (115), Expect = 2e-04 Identities = 91/388 (23%), Positives = 145/388 (37%), Gaps = 24/388 (6%) Frame = +1 Query: 233473 MPNV-VVVGAQWGDEGKGRVVDWLAAQADLVARYNGG-HNAGHTLV-VGGNTYKLALLPS 233643 M NV +V+ Q+G GKG + +LA + N NAGHT + G + +LP+ Sbjct: 1 MKNVDLVIDLQFGSTGKGLIAGYLAEKNGYDTVINANMPNAGHTYINAEGRKWMHKVLPN 60 Query: 233644 GIVRG--KRGVIGNGVALDPEALLAEIGRMAELGLPVTPDNLSIAENATLVLPIHRAIDE 233817 GIV KR ++G G L+ EI E+ + D ++I L+ P+ +DE Sbjct: 61 GIVSPNLKRVMLGAGSVFSINRLMEEI----EMSKDLLHDKVAI-----LIHPMATVLDE 111 Query: 233818 AQERLRR----EPIGTTLRGIGPAYEDKVGR----RGLRVGDLAEPDGLAAKLDVLVDHH 233973 + IG+T +G A +K+ R + D+A+ DG A+ V Sbjct: 112 EAHKKAEVGIATSIGSTGQGSMAAMVEKLQRDPTNNTIVARDVAQYDGRIAQYVCTV--- 168 Query: 233974 NAWFRGLGLDEYDRDAMLATLVALAPKILPFVRPVWADLNDATDRGERILFEGSQAVMLD 234153 +E+D M + ERIL EG+Q L Sbjct: 169 ---------EEWDMALMAS---------------------------ERILAEGAQGFSLS 192 Query: 234154 IDWGTYPFXXXXXXXXXXXXXXXXXXXXXXXHVLGVTKAYATRVGG--GPFLTELTDATG 234327 ++ YP+ V+G + + RVGG G + + T Sbjct: 193 LNQEFYPYCTSRDCTPARFLADMGIPLPMLNKVIGTARCHPIRVGGTSGGHYPDQEELTW 252 Query: 234328 ETLRARGQEFGVNTGRPRRCGWLDAAQLRQAVRISGIDSLALTKLDVL------DGFESI 234489 E L + E T + RR Q+++A+ D + L + L D I Sbjct: 253 EQL-GQVPELTTVTKKIRRVFSFSFIQMQKAMWTCQPDEVFLNFCNYLSPMGWQDIVHQI 311 Query: 234490 ALCVGYEFDGARVDHL---PASLDAQSR 234564 + + A+V +L P LD + R Sbjct: 312 EVAAQSRYCDAKVKYLGFGPTFLDVELR 339 >ref|YP_052989.1|Hypothetical protein Length = 343 Score = 48.9 bits (115), Expect = 2e-04 Identities = 91/388 (23%), Positives = 145/388 (37%), Gaps = 24/388 (6%) Frame = +1 Query: 233473 MPNV-VVVGAQWGDEGKGRVVDWLAAQADLVARYNGG-HNAGHTLV-VGGNTYKLALLPS 233643 M NV +V+ Q+G GKG + +LA + N NAGHT + G + +LP+ Sbjct: 1 MKNVDLVIDLQFGSTGKGLIAGYLAEKNGYDTVINANMPNAGHTYINAEGRKWMHKVLPN 60 Query: 233644 GIVRG--KRGVIGNGVALDPEALLAEIGRMAELGLPVTPDNLSIAENATLVLPIHRAIDE 233817 GIV KR ++G G L+ EI E+ + D ++I L+ P+ +DE Sbjct: 61 GIVSPNLKRVMLGAGSVFSINRLMEEI----EMSKDLLHDKVAI-----LIHPMATVLDE 111 Query: 233818 AQERLRR----EPIGTTLRGIGPAYEDKVGR----RGLRVGDLAEPDGLAAKLDVLVDHH 233973 + IG+T +G A +K+ R + D+A+ DG A+ V Sbjct: 112 EAHKKAEVGIATSIGSTGQGSMAAMVEKLQRDPTNNTIVARDVAQYDGRIAQYVCTV--- 168 Query: 233974 NAWFRGLGLDEYDRDAMLATLVALAPKILPFVRPVWADLNDATDRGERILFEGSQAVMLD 234153 +E+D M + ERIL EG+Q L Sbjct: 169 ---------EEWDMALMAS---------------------------ERILAEGAQGFSLS 192 Query: 234154 IDWGTYPFXXXXXXXXXXXXXXXXXXXXXXXHVLGVTKAYATRVGG--GPFLTELTDATG 234327 ++ YP+ V+G + + RVGG G + + T Sbjct: 193 LNQEFYPYCTSRDCTPARFLADMGIPLPMLNKVIGTARCHPIRVGGTSGGHYPDQEELTW 252 Query: 234328 ETLRARGQEFGVNTGRPRRCGWLDAAQLRQAVRISGIDSLALTKLDVL------DGFESI 234489 E L + E T + RR Q+++A+ D + L + L D I Sbjct: 253 EQL-GQVPELTTVTKKIRRVFSFSFIQMQKAMWTCQPDEVFLNFCNYLSPMGWQDIVHQI 311 Query: 234490 ALCVGYEFDGARVDHL---PASLDAQSR 234564 + + A+V +L P LD + R Sbjct: 312 EVAAQSRYCDAKVKYLGFGPTFLDVELR 339 >ref|NP_817998.1|gp25 Length = 941 Score = 45.1 bits (105), Expect = 0.003 Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 15/203 (7%) Frame = -3 Query: 98792 IAPLMKQYAIPGMAIGIVADGKPQVFDYGVMSKQTGKPVTGDTLFEIGSVSKTLTATLAA 98613 +A M A PG+ + I + + YG+ + G P+T D F IGS +K TAT Sbjct: 84 VAQGMADGAGPGVGLYITSPHGQYLQTYGIST--AGVPLTPDMHFRIGSATKPFTATAVL 141 Query: 98612 DAQEGGELSLADPVARY-LPEL------QGKPFGVVTLLQLGTHTPGGTP--------LQ 98478 A + G LSL D + ++ PE Q + L+ + + Sbjct: 142 MAIQDGLLSLEDTIDQFDTPEFKLSDIDQADKIKIRHLMMMRSGVFNEQRDLSFMLNFAL 201 Query: 98477 VPDSIRDDAGLIRYLDAWRPEYAPGTHRKYSNVAIGMLGWLTAKAMHEDFATLMEQRLFP 98298 +P S D+ R L + + PGT +Y N ++ + ++ + + Sbjct: 202 MPKSELSDSAWFRILTSHKSVREPGTGFEYVNANWFIISLVLRAVRGRHIRDIITEDIIT 261 Query: 98297 ALGMTHTTIDVPAARMTDYAQGY 98229 LG+T T+ A YA G+ Sbjct: 262 PLGLTETSWPATAKMPAPYAVGH 284 >ref|NP_817477.1|gp27 Length = 946 Score = 43.9 bits (102), Expect = 0.007 Identities = 50/212 (23%), Positives = 82/212 (38%), Gaps = 15/212 (7%) Frame = -3 Query: 98819 DLHDTVTRHIAPLMKQYAIPGMAIGIVADGKPQVFDYGVMSKQTGKPVTGDTLFEIGSVS 98640 DL + +A M A PG+ + + + + YG+ + TG P+T D F IGS + Sbjct: 75 DLTSVIDEIVAEGMATGAGPGVGLYVTSPQGYYLKTYGIST--TGVPLTPDMHFRIGSAT 132 Query: 98639 KTLTATLAADAQEGGELSLADPVARY-LPELQGKPF---GVVTLLQLGTHTPGGTPLQ-- 98478 K TAT A + G +SL D + ++ PE + + + L G Q Sbjct: 133 KPFTATAVLMAIQDGLISLEDTIDQFDTPEFKLSDIDRANEIKIRHLMMMRSGVFNEQRD 192 Query: 98477 ---------VPDSIRDDAGLIRYLDAWRPEYAPGTHRKYSNVAIGMLGWLTAKAMHEDFA 98325 P S D L + + PGT +Y N ++ + + Sbjct: 193 LTFMLNFALFPKSGFSDQSWFNVLKSHKLVRDPGTEFEYVNGNWFLISLILKAVRGKHIR 252 Query: 98324 TLMEQRLFPALGMTHTTIDVPAARMTDYAQGY 98229 ++ + LG+T T+ AA YA G+ Sbjct: 253 QILYDDIINPLGLTETSWPATAAMPAPYAVGH 284 >ref|NP_064745.1|gp7 Length = 540 Score = 43.1 bits (100), Expect = 0.012 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 7/186 (3%) Frame = +2 Query: 150149 NGTDGAHLVLASSKTGAANAISVAVGNVSNDGGLSNLGVTSTADPSGGASKIESANGAAA 150328 N + A + +S+T A + + A + +N G + A S AS + N A + Sbjct: 92 NNAETAEVNAEASETAAGLSATAAATSATNAGASE-----TAASASATASATSATNSATS 146 Query: 150329 WRQSTAAQDAKFMLNGIASTSASNAV------SGVLTGITLNLSAAAVSAXXXXXXXXXX 150490 Q+ + A + G A+TS +NA SG + T SAA+VSA Sbjct: 147 ASQAATSASAAAVSEGNAATSETNAANSATSASGSASTATTQASAASVSA---------- 196 Query: 150491 XXKSQAATITNFVSLYNTVVKTMGALSSYTAGASSQ-GALIGDSTLNTIRNSLASIVARG 150667 + AAT S N A +S A A+S+ A +ST+ T + A+ A Sbjct: 197 ---TNAAT-----SASNAATSATNAAASQAAAATSETNAAASESTVTTSATNAATSEANA 248 Query: 150668 VDGGAT 150685 +T Sbjct: 249 ATSAST 254 Score = 41.2 bits (95), Expect = 0.046 Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 4/174 (2%) Frame = +3 Query: 78054 ASSCRTISARNSA----DTSTLSSNSEIHNPSAASRQIISVAACSSGTGSGRVHSRIGTD 78221 +++ SA NSA +T +S + + +AA+ + + + +S +GS + T Sbjct: 132 SATASATSATNSATSASQAATSASAAAVSEGNAATSETNAANSATSASGS----ASTATT 187 Query: 78222 QRARVSCSVIIDATSTRSTSILAAGLAASSTACRYARAAAPSPLESAAIRAVNCAPNRSV 78401 Q + S S ATS + + A AAS A + A + + A N A + + Sbjct: 188 QASAASVSATNAATSASNAATSATNAAASQAAAATSETNAAASESTVTTSATNAATSEAN 247 Query: 78402 ACPNSASSSPCLFAK*YCSAPFVTPARSATASSVNAATP*CVAISDAAASNCAR 78563 A ++++++ ++ T A +A S NAA+ A S A ++ ++ Sbjct: 248 AATSASTATTQATNAATSASTASTSATNAATSETNAASSASSAASSATSAQASK 301 Score = 40.8 bits (94), Expect = 0.060 Identities = 66/285 (23%), Positives = 106/285 (37%), Gaps = 20/285 (7%) Frame = +2 Query: 150179 ASSKTGAANAISVAVGNVSNDGGLSNLGVTSTADPSGGASKIESANGAAAWRQSTAAQDA 150358 A+S + AA + S A + N S SG AS + AA+ + AA A Sbjct: 144 ATSASQAATSASAAAVSEGNAATSETNAANSATSASGSASTATTQASAASVSATNAATSA 203 Query: 150359 KFMLNGIASTSASNAVSGVLTGITLNLSAAAVSAXXXXXXXXXXXXKSQAATITNFVSLY 150538 A+TSA+NA + T +AAA + ++ AAT + Sbjct: 204 SN-----AATSATNAAASQAAAATSETNAAASESTVTTSATNAATSEANAATSASTA--- 255 Query: 150539 NTVVKTMGALSSYTAGASSQGALIGDSTLNTIRNSLASIVARGVDGGATTGKGNGHVNLL 150718 T T A S+ TA S+ A ++ + +S AS AT+ + + L Sbjct: 256 -TTQATNAATSASTASTSATNAATSETNAASSASSAAS--------SATSAQASKDAALA 306 Query: 150719 S--------IGIKLEKDGTLNVDSAKLDGALSANPS-GVARLFNPE---------NG--I 150838 + +G K+ N +A + GAL N + G+ ++++ +G I Sbjct: 307 ALDSFDDRYLGQKVSDPTLDNDGNALVAGALYFNTTDGIMKVYDGSVWLAAYASLSGALI 366 Query: 150839 GTRLADQITQFTKKNGMIDVRTTALTADLKRVTQQQSDLSDYAAQ 150973 T + T + + T A TA T Q L+ A Q Sbjct: 367 ATNNLSDVLDVTASRTNLGLGTAATTASTDYATAAQGALAVSAVQ 411 >ref|NP_818228.1|gp169 Length = 358 Score = 42.7 bits (99), Expect = 0.016 Identities = 51/227 (22%), Positives = 86/227 (37%), Gaps = 15/227 (6%) Frame = -3 Query: 98762 PGMAIGIVADGKPQVFDYGVMSKQTGKPVTGDTLFEIGSVSKTLTATLAADAQEGGELSL 98583 PGM + I G+ + KP++ D F SV+KTLTA + G++SL Sbjct: 26 PGMMLKITGPAGDYELTRGLRTVAPDKPMSFDAKFRAASVTKTLTAMAILREVDKGKISL 85 Query: 98582 ADPVARYLPEL-QGKPFGVVTLLQLGTHTP--------GGTPLQVPD-SIRDDAGLIRYL 98433 D V +Y+ ++ G+ V +L + + T L P G ++ + Sbjct: 86 DDVVDKYVAQIPNGRQLTVKQVLMMRSGLAEYQTDIIIALTFLAFPTWPTFSPEGAMQAV 145 Query: 98432 DAWRPEYAPGTHRKYSNVAIGMLGWLTAKAM-HEDFATLMEQRLFPALGMTHTTI----D 98268 + + PG Y +L + K + + ++ L LGMT T+ Sbjct: 146 RRNKAVFKPGAQYMYCGSNYHLLALILEKVNGGKGWKRILMDDLVKPLGMTSTSFPDGAT 205 Query: 98267 VPAARMTDYAQGYTKDGKPVRMSQGMLWQPAYGVRTTAADLLRFVQA 98127 +P + Y G K PA G+ TT D+ ++ A Sbjct: 206 IPQPEVKGYTTGVFKKWSENGKVNANFHGPAGGMVTTMGDMHKWATA 252 >ref|NP_958209.1|gene 33 protein Length = 322 Score = 40.8 bits (94), Expect = 0.060 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Frame = +3 Query: 115083 ERERQHHEVSAALPDREPADERGRDGAEHRRRQQRDAHRCDTARQHQPRRVAAEPEEDAL 115262 E+E++ HE + A+E+ R AE + + + +A AR+ + AAE E Sbjct: 159 EQEKREHEERL----KREAEEKARAEAEAKAKAEIEA----AARREAEAKAAAERAERER 210 Query: 115263 PERQQARVPEQQVAAERGEREHQ-HFSRERARTQHERQHAR 115382 E +Q E + AAER ERE Q ER + Q E + R Sbjct: 211 IEAEQRAQREAKEAAERAEREKQAAIEAERRKAQEEAERIR 251 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 39.7 bits (91), Expect = 0.13 Identities = 49/147 (33%), Positives = 58/147 (39%), Gaps = 7/147 (4%) Frame = +1 Query: 29353 RHARPDAADLRHRAVGQACGRRQA------RGAPSRAGLVAVADPARRAGRADLRVETRV 29514 R R A L H+A CG QA RG P AG PA R G V+ + Sbjct: 343 RGLRDAGAGLPHQA---GCGYLQADCLQDRRGGPGGAG---ADQPAARRG-----VQGQA 391 Query: 29515 GRGRPERTAVRGRADDGRSAPRRGVREARQ-REAGRQLPDEPLAEGAAARHDHEQRARHD 29691 GR ER ++G AD G G+R R +E R+LP A R Q R Sbjct: 392 GRRTVERRGLQG-ADAG------GIRARRDDQEPVRRLPRRRAGVCRADRRREGQVRRLR 444 Query: 29692 EPRDAGAGRGHRAVDLPERRRVQHRSV 29772 PR G+G RA R R H V Sbjct: 445 GPRQGRVGQGGRARCAGPRLRFDHSGV 471 >ref|NP_061549.1|Orf53 Length = 354 Score = 38.1 bits (87), Expect = 0.39 Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 18/200 (9%) Frame = -3 Query: 107687 DRRRRQVDERAGGRAGVLHAVRHDLECSRVFLRDLRQAAAQANRYVVGEYREQRRRDAAV 107508 D +R+ +A +AG+ ++ LEC + +L+ ++GE E+ +AA Sbjct: 109 DWEQREEMRKAKHQAGI-DQIKMRLECRDLDSTELKANIEWLEGLLIGEDWEEFETEAAR 167 Query: 107507 RPDRC----------RQDRHREGRHFVRQRVECAGEPRGRG*KTRVRRCAYEGFR-SVER 107361 + R+ E R R E A + + R+ R A E R + ER Sbjct: 168 TKGKALAALREALVAREKYEAEQAELERLRAEAAAREQKER-EERIAREAAEAERLAAER 226 Query: 107360 PAQHDPDRSGKGSGFAERHAEGEPHEVLHGA-------VSRVQRADAL*RHEWRVPQHAS 107202 AQ + D + + A+ AE E+ A + QRA+ R R + A+ Sbjct: 227 RAQEERDATARREAEAKAAAERRELELRLAAEKAEREKLEAQQRAEQAERDAQRRAEEAT 286 Query: 107201 AEERERQLSDLGRPDRHRPA 107142 A ER+RQ + R +R A Sbjct: 287 AAERQRQADEQARIEREAAA 306 Score = 38.1 bits (87), Expect = 0.39 Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 3/99 (3%) Frame = +3 Query: 115086 RERQHHEVSAALPDREPADERGRDGAEHRRRQQRDAHRCDTARQHQPRRVAAEPEEDAL- 115262 RE++ E A RE A E R AE R +++RDA TAR+ + AAE E L Sbjct: 203 REQKEREERIA---REAA-EAERLAAERRAQEERDA----TARREAEAKAAAERRELELR 254 Query: 115263 --PERQQARVPEQQVAAERGEREHQHFSRERARTQHERQ 115373 E+ + E Q AE+ ER+ Q + E + +RQ Sbjct: 255 LAAEKAEREKLEAQQRAEQAERDAQRRAEEATAAERQRQ 293 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 994,617,181 Number of Sequences: 14420 Number of extensions: 18974206 Number of successful extensions: 73185 Number of sequences better than 0.5: 20 Number of HSP's better than 0.5 without gapping: 11782 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 73044 length of database: 3,019,461 effective HSP length: 127 effective length of database: 1,188,121 effective search space used: 105108312386 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig279 (261,513 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 480 e-134 ref|NP_945089.1|gp58 276 8e-73 ref|NP_803803.1|ORF237 191 4e-47 ref|YP_006950.1|DNA polymerase 157 4e-37 ref|YP_024516.1|putative DNA polymerase 149 2e-34 ref|NP_852498.1|DNA polymerase I 146 8e-34 ref|NP_542563.1|RTCB-like protein 132 2e-29 ref|NP_817633.1|gp44 128 2e-28 ref|NP_046860.1|DNA polymerase 122 1e-26 ref|NP_075308.1|gp41 119 1e-25 ref|NP_046572.1|ABC transporter 116 1e-24 ref|YP_024986.1|DNA polymerase I 110 8e-23 ref|NP_039708.1|predicted 66.2Kd protein 110 8e-23 ref|YP_024429.1|DNA polymerase I 109 1e-22 ref|YP_164694.1|orf59 108 3e-22 ref|YP_006556.1|Ppp 104 3e-21 ref|NP_958232.1|gene 58 protein 102 1e-20 ref|NP_040641.1|Nin protein 102 2e-20 ref|NP_047956.2|gp11 89 2e-16 ref|NP_640280.1|DNA polymerase 84 5e-15 ref|NP_943839.1|gp61 84 6e-15 ref|NP_858986.1|DNA polymerase lacking N-terminal exonuclease do... 84 8e-15 ref|NP_817817.1|gp56 83 1e-14 ref|NP_523322.1|gene 5B protein 82 3e-14 ref|NP_523320.1|DNA polymerase 82 3e-14 ref|YP_024841.1|Pas55 80 7e-14 ref|NP_813726.1|gp11 79 2e-13 ref|NP_064753.1|RP DNA pol 78 4e-13 ref|NP_041982.1|DNA polymerase 77 7e-13 ref|NP_853574.1|gp14 77 1e-12 ref|NP_848283.1|DNA polymerase 75 3e-12 ref|NP_052094.1|5B protein 68 5e-10 ref|NP_052093.1|DNA polymerase 68 5e-10 ref|NP_570330.1|DNA polymerase 64 7e-09 ref|NP_775225.1|DNA polymerase1 62 2e-08 ref|YP_164695.1|transposase 62 2e-08 ref|NP_612844.1|Gp15 protein 60 9e-08 ref|NP_877458.1|putative DNA directed DNA polymerase 60 1e-07 ref|NP_051006.1|P45 60 1e-07 ref|NP_958711.1|Bbp42 56 1e-06 ref|NP_996604.1|DNA polymerase 56 1e-06 ref|NP_996652.1|DNA polymerase 56 1e-06 ref|NP_899291.1|Sir2 53 2e-05 ref|NP_795675.1|putative DNA polymerase A domain 52 3e-05 ref|NP_570332.1|exonuclease 51 6e-05 ref|YP_006863.1|putative serine 50 7e-05 ref|NP_039722.1|predicted 14.5Kd protein 49 2e-04 ref|YP_006958.1|flap endonuclease 49 2e-04 ref|NP_817647.1|gp58 48 5e-04 ref|NP_112710.1|ORF47 48 5e-04 ref|NP_076626.1|endopeptidase 48 5e-04 ref|NP_108727.1|minor structural protein 3 47 6e-04 ref|NP_046874.1|putative DNA primase 47 8e-04 ref|NP_663686.1|structural protein 47 8e-04 ref|NP_046584.1|putative transglycosylase 46 0.001 ref|NP_813764.1|putative DNA polymerase 45 0.003 ref|NP_958267.1|hypothetical protein 45 0.004 ref|NP_958209.1|gene 33 protein 44 0.007 ref|NP_777327.1|hypothetical protein 43 0.012 ref|YP_195220.1|RNase H 43 0.016 ref|NP_891817.1|RnaseH ribonuclease 42 0.027 ref|NP_536385.1|conserved hypothetical protein 42 0.027 ref|NP_945059.1|gp28 42 0.027 ref|NP_932573.1|RNaseH ribonuclease 42 0.027 ref|NP_795697.1|putative tail protein 42 0.035 ref|NP_835599.1|similar to DNA polymerase I 42 0.035 ref|NP_047955.2|gp9a 40 0.077 ref|NP_899249.1|RNaseH ribonuclease 40 0.077 ref|YP_006930.1|putative Sir2-like protein 40 0.10 ref|NP_112716.1|LYS 39 0.23 ref|NP_075318.1|gp51 39 0.29 ref|YP_024820.1|Pas34 39 0.29 >ref|NP_945090.1|gp59 Length = 429 Score = 480 bits (1236), Expect = e-134 Identities = 228/394 (57%), Positives = 306/394 (77%) Frame = +3 Query: 189654 IGNGLEWFDFTVYSFFAVIIAKLFFPTGNELTSVLLTVATFGVGFFMRPVGGIVLGVYAD 189833 +GNG EWFDF YSFF+VIIAKLFFP+ ++ S+LL+V+T GVGFFMRP+GGIV+G AD Sbjct: 28 VGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLLSVSTIGVGFFMRPIGGIVIGGIAD 87 Query: 189834 KVGRKAALSLTILLMAAGTALIGIAPTYEQAGIAAPLMIVVARLLQGFSAGGEMGGATAF 190013 KVGR+AAL++TI LM AGTA+IG APTY+ AG+ APLMIVVARLLQGFSAGGEMGGATA+ Sbjct: 88 KVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGGEMGGATAY 147 Query: 190014 LTEYAPPEKRAYYSSWIQSSIGFAVLLGAATGTFVTTSLDTQALHSWGWRLPFLLGIIVG 190193 L E P E+ YY+SWIQ+SIGFA++L + F+ LD Q + SWGWR+PFLLG+ +G Sbjct: 148 LRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWRIPFLLGLGLG 207 Query: 190194 PVGYFIRSHIDETPAFSAVESQAKESSPLKEVLHTYPRETFASFSMVILWTVCTYVLLFY 190373 PVG +IRS +++ P F A + + E +P+ EV+ ++ RE F +V+ WTVC+YVLLFY Sbjct: 208 PVGIYIRSRLND-PGFPA-DERLGECAPVVEVVRSFSREALVGFGLVVFWTVCSYVLLFY 265 Query: 190374 MPTYSVRTLHLPQSTGFTAGMVGGLMIMCCSPIVGRLADAWGRRVFLSGSALAILVLAWP 190553 +PTY+ + L LP STGF A +VG +++ +P++G L+D +GRR FL+G+ L +V A+P Sbjct: 266 IPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLFGRRWFLAGALLVAIVAAYP 325 Query: 190554 MFSWINHAPGFASLIVFQAVFGVLIATYTGPILAAFAELFPTKVLSTGLSVAYNFAVTIF 190733 +F+ +N APG +L+VFQ VFG++IA+Y GPILAA +++FP VLSTG+S++YN AV F Sbjct: 326 LFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFPDGVLSTGISISYNLAVITF 385 Query: 190734 GGFAPFLITWLIARTGSNMAPAFYVMLAAAVSFV 190835 GGF+ +ITW IA T +N+APAFYV+ AA VS + Sbjct: 386 GGFSAAIITWAIATTHNNLAPAFYVIAAAIVSLI 419 >ref|NP_945089.1|gp58 Length = 297 Score = 276 bits (705), Expect = 8e-73 Identities = 136/293 (46%), Positives = 189/293 (64%) Frame = +3 Query: 188526 MRITPLPPLQCLVAFEAAVRHASFTKAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRS 188705 M+I PLPPLQCLV F+AA RH +FT+AA EL++ Q A+S+Q+ +LE FLG +LFVR+ ++ Sbjct: 1 MKIQPLPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKA 60 Query: 188706 LRLTIAGEQYAAQVHHLLTQCAEATHDVMKPYGDLELTIACSSGVALLWLTPRLPNFRAA 188885 L LT AG+QYA +VH +L C EAT VMK LTIAC+SG A L+L R+ F A Sbjct: 61 LHLTRAGQQYADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAE 120 Query: 188886 YPNIKLRLIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLAGRT 189065 +P + +R++VR+G+ +++ AEFD+GVYY+R P + E+V CAP +LAGR Sbjct: 121 HPEVSVRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRR 180 Query: 189066 LDAADLANETLLRLEDGQRQWMSWSEWFDMNDVDRQKAQPQDITINSYPQIVQMTILGQG 189245 + DL TLL E+ QRQWM W +WF + + + I+ NSYP ++Q+ + G G Sbjct: 181 VPPQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHG 240 Query: 189246 VSLGWRYMIDACIEAGLLVRVTEASASHGGGYYVISPNDRAQNQAARLFTRWL 189404 LGW++MI +E+G LV ++A AS GG Y VI P DR A +F WL Sbjct: 241 AILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWL 293 Score = 68.6 bits (166), Expect = 3e-10 Identities = 62/240 (25%), Positives = 99/240 (41%), Gaps = 4/240 (1%) Frame = -1 Query: 217674 LRHLRYFVAVAEERNFTRAAERLHIAQPPLSRQIQQLEEALGVPLFERTARPLKLTDAGR 217495 L+ L +F A A NFTRAAE L++AQ +S+Q+ +LE LG LF R A+ L LT AG+ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 217494 FFYSHAVQLLAQTTELESMTKRVGKIERSMSVGFVGSTLYGMLPKIIRRFRSEYPAVELS 217315 + +LA E ++ + + S+++ T L I F +E+P V + Sbjct: 69 QYADRVHAILADCVEATALVMK-EQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSV- 126 Query: 217314 LHEMSTMDQIKALKEGRIDVGFGRIRHEDPS--VRRVVLREERMIVALPVGHVLDSAKPV 217141 + + + L D+G IR P ++ E+ P P Sbjct: 127 --RILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVPP- 183 Query: 217140 LSLHDLVNDTLIIFPKAPRP--SYADQVLAAFHDRALQPRRIYETRELQIALGLVAMGEG 216967 DL+ TL++ + R + D + +P R + L L G G Sbjct: 184 ---QDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHG 240 Score = 61.2 bits (147), Expect = 4e-08 Identities = 65/293 (22%), Positives = 113/293 (38%), Gaps = 5/293 (1%) Frame = -2 Query: 230639 PIRAMRIFTRIVEMNSFTRAAQALGISRATATRTVQELEAALGMPLLVRTTRALRPTPEG 230460 P++ + F +FTRAA+ L +++ ++ V +LE LG L VR +AL T G Sbjct: 8 PLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAG 67 Query: 230459 DAYYRRCVSITADVDELEASIRGAALHPSGPLRVELPASVASTIVLPALGEFHARHPDLE 230280 Y R +I AD E A + S L + + A+ + + EF A HP++ Sbjct: 68 QQYADRVHAILADCVEATALVMKEQTPHS--LTIACASGTATLFLADRIAEFSAEHPEVS 125 Query: 230279 LTLAVAGRAGDRIGDAIDCSI-RLGALPDSSLVARRLGSLERVTCASPAYLDRFGVPRTP 230103 + + V + D + + +P + + + + +P +L VP P Sbjct: 126 VRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVP--P 183 Query: 230102 DDLGAHRAVGGSHV----FGQRSAELEFVVDDAVRKVRLDGIVSVDDEQAYLACGVHGLG 229935 DL + G R V + R R +S + L +HG G Sbjct: 184 QDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPAR---TISANSYPVLLQLALHGHG 240 Query: 229934 LIQPTRVAAQPLIDAGRLREVLAGWQPDALAVSAVYVKRPHVSPGVRAFVDWI 229776 I + PL+++G+L A ++ +P V F +W+ Sbjct: 241 AILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWL 293 Score = 57.0 bits (136), Expect = 8e-07 Identities = 73/264 (27%), Positives = 112/264 (42%), Gaps = 9/264 (3%) Frame = +2 Query: 172277 LRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTETAERIY 172456 L F + +FTRAA+ +A+ VS+ V LE G+ L R + + LT ++ Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71 Query: 172457 ERCAAVLD---ELDALEVEAQTHTREPEGLLRLVAHTTAALNRLVPLIAGFKSAHPNVRL 172627 +R A+L E AL ++ QT P L A TA L L IA F + HP V + Sbjct: 72 DRVHAILADCVEATALVMKEQT----PHSLTIACASGTATL-FLADRIAEFSAEHPEVSV 126 Query: 172628 DVTLTERPVDLVGEGYDIGIVVPYMLTSESTVVRLVERIPVVIVATPAYLQAHARPETPA 172807 + + E +L +DIG+ + + V P +L P P Sbjct: 127 RILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVP--PQ 184 Query: 172808 DLANHPFVPISPSLRRPALSFRVDGNLLTV------PFRFDISSNSPVFNREMVMHDFGI 172969 DL + ++ +R + +R D LTV P R IS+NS ++ +H G Sbjct: 185 DLMEATLL-VAEEQQRQWMGWR-DWFRLTVGEIGFRPAR-TISANSYPVLLQLALHGHGA 241 Query: 172970 GVVPKTLVQAELASGALVQLLEDA 173041 + K ++ + SG LV L DA Sbjct: 242 ILGWKHMITPLVESGKLV-LASDA 264 Score = 56.2 bits (134), Expect = 1e-06 Identities = 61/267 (22%), Positives = 107/267 (40%), Gaps = 6/267 (2%) Frame = +3 Query: 228597 VSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLEYARRILDQMDELGELLGSAKQRPKG 228776 VSK++ ++E G TL R + + LT G Y + IL E L+ K++ Sbjct: 38 VSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHAILADCVEATALV--MKEQTPH 95 Query: 228777 LLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCIRF--GEPPD 228950 L + G + I+ F A +PEVSV++ + L FD+ + + PP Sbjct: 96 SLTIACASGTATLFLADRIAEFSAEHPEVSVRILVREGVFNLNAAEFDIGVYYIRDVPPP 155 Query: 228951 TRVVARRLAPNRRLLCAAPAYLARHGVPGTPHDLTRHNCIGIRQGDEGYGVWR----LTS 229118 +A + CA P +LA VP P DL + + + WR LT Sbjct: 156 GIAGTAIVAEDVHAYCA-PTFLAGRRVP--PQDLMEATLLVAEEQQRQWMGWRDWFRLTV 212 Query: 229119 GRGAARHTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDLRDYLADGRLVVVLPDHE 229298 G R + + N + ++ AL GHG ++ + + + G+LV+ H Sbjct: 213 GEIGFRPARTI------SANSYPVLLQLALHGHGAILGWKHMITPLVESGKLVLASDAHA 266 Query: 229299 TPSADIYAVYAQRHQMSTRIRAFVDFL 229379 + ++ + + + F ++L Sbjct: 267 SFGGAYQVIWPADRRDTPAVTMFREWL 293 Score = 40.8 bits (94), Expect = 0.059 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%) Frame = +1 Query: 70771 MKVLDLDAVRAFVL---VADLASFTRAADALGTTQSAVSLKLKRLEAHLGKPLLARTPRV 70941 MK+ L ++ V A +FTRAA+ L Q AVS ++ +LE LG L R + Sbjct: 1 MKIQPLPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKA 60 Query: 70942 VKLAADGENFLPAARALL 70995 + L G+ + A+L Sbjct: 61 LHLTRAGQQYADRVHAIL 78 >ref|NP_803803.1|ORF237 Length = 277 Score = 191 bits (484), Expect = 4e-47 Identities = 101/242 (41%), Positives = 147/242 (60%), Gaps = 2/242 (0%) Frame = +3 Query: 245136 HPIDPVVRARVMAELAEVERRHDVCVLFACESGSRGWGFASPDSDYDVRFVYAHRRDWYL 245315 HP++ +R + EL +E+++ V +++ACESGSRGWGFAS +SDYDVRF+Y + Y+ Sbjct: 5 HPVNDEMRVTINVELDRIEKKYGVKIIYACESGSRGWGFASTNSDYDVRFIYVNHPSHYV 64 Query: 245316 SVEPQ-RDVIERPLDDELDVSGWELRKALQLLRRSNPTLLEWLDSPVVYREDARWAPRLR 245492 V+ + RD IE + ELD++GW + K LQL +SNPTLLEWL+SP+VYR+ R +R Sbjct: 65 RVDNEARDTIEEMVSKELDLAGWSITKTLQLAYKSNPTLLEWLNSPIVYRKVDRDYKLIR 124 Query: 245493 SLASAFFSPVRGRHHYLSMAKKNFRGYLQGDTVRYKKYLYVLRPLLAVRWIDMGLGMPPM 245672 A F P HY+SMAK+ +L + VR KKY Y LRPLLA W+ L PPM Sbjct: 125 DAALKHFIPESSYMHYISMAKQTKMRWLSDEKVRMKKYFYSLRPLLAAMWVRESLEHPPM 184 Query: 245673 RFVDLVDGTVHEPTVRAELDALLALKMSANESEYGPRRPAIHALVETMLADAEHD-REYK 245849 F DL+ + +P + + L+ K+ A E + R P + ++ L+ + D +Y+ Sbjct: 185 VFHDLLP-LLTDPILYKRIQELVNDKVGATEQDLIDRCPILDQFIDFQLSREKPDFGKYE 243 Query: 245850 RP 245855 RP Sbjct: 244 RP 245 >ref|YP_006950.1|DNA polymerase Length = 855 Score = 157 bits (397), Expect = 4e-37 Identities = 157/605 (25%), Positives = 269/605 (44%), Gaps = 58/605 (9%) Frame = -3 Query: 54913 AFDTETTALDPMLARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVLARLKPWLESA 54734 AFD+ET+AL L+G+S S + + Y+ + + L+ L+S Sbjct: 162 AFDSETSALYCRDGYLLGVSISHQEYQGVYID---------SDCLTEVAVYYLQKILDSE 212 Query: 54733 DRKKVGQHLKYDAQVLANYDIALNGIE-------HDTLLESYVVESHR-THDMDSLALRH 54578 + V +LK+D Y + L + HDT+L+ YV++ R TH + SLA+++ Sbjct: 213 NHTIVFHNLKFDMHFY-KYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKY 271 Query: 54577 LGV-----KTIKYEDVAGKGAK----QIGFXXXXXXXXXXXXXXXXDITLQLHHALYPQV 54425 + + K++D K K + D T++LH+ P++ Sbjct: 272 TDMGDYDFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFFLPKI 331 Query: 54424 AREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRL---------IXXX 54272 + L +Y ++ MP + L+++E GV I RL ++ L Sbjct: 332 EKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYTYPEV 391 Query: 54271 XXXXXXXXXEFNLGSPKQIGQIFFEKLQL-PVVKKTPSGAPSTDEEVLQKLAEDYPLPKL 54095 FN S KQ+ + F+ + L P K T +GA STD E L +LA +P+ K Sbjct: 392 KQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELATQHPIAKT 451 Query: 54094 LLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDP-NLQNIPVRTAE 53918 LLE R L+KL STY +K+ ++ G + T + + + +GRL+S+ NLQ +P + Sbjct: 452 LLEIRKLTKLISTYVEKILLSID-ADGCIRTGFHEHMTTSGRLSSSGKLNLQQLP---RD 507 Query: 53917 GRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAF-------SQGEDIHRATA 53759 I+ +A PG+R+++ D + E+ A +SGD ++ + F + D H A Sbjct: 508 ESIIKGCVVAPPGYRVIAWDLTTAEVYYAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIA 567 Query: 53758 AEVFGV--TPLEVNS---DQRRIAKVINFGLIYGMSAFGLASNLG--------------- 53639 VF + P +V R+ AK I FG++YG +A ++ Sbjct: 568 HMVFKLQCEPRDVKKLFPALRQAAKAITFGILYGSGPAKVAHSVNEALLEQAAKTGEPFV 627 Query: 53638 -ITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWLPEINGGNGPRRQ 53462 T AK YI+ YF ++P + ++++ K G++ + FGR+ L I+ + + Sbjct: 628 ECTVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHGFIYSHFGRKRRLHNIHSEDRGVQG 687 Query: 53461 AAERAAINAPMQGTAADLIKLSMIAVDGWLTRDQLASRM--IMQVHDELVLEVPEGELSL 53288 R+ NA +Q ++D + L + D + L M +M VHD +V V E + Sbjct: 688 EEIRSGFNAIIQSASSDSLLLGAVDADNEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQ 747 Query: 53287 VREKL 53273 E L Sbjct: 748 YNEIL 752 >ref|YP_024516.1|putative DNA polymerase Length = 1072 Score = 149 bits (375), Expect = 2e-34 Identities = 86/322 (26%), Positives = 169/322 (52%), Gaps = 18/322 (5%) Frame = -3 Query: 54106 LPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQNIPVR 53927 L +LL H + ++++T KL M+N +H ++++ T RL+S++PNLQN+P Sbjct: 692 LLELLKYHASMQTKRNSFTKKLLNMINKQKRTLHGSFSETGTETSRLSSSNPNLQNLPAH 751 Query: 53926 TAEGRR------IREAFIASPGHRIV-SADYSQIELRIMAHISGDASLLRAFSQGEDIHR 53768 T++ + I+ +F++ + ++ +DYS +E+RI+ + D +L++F GEDIH+ Sbjct: 752 TSDVNKFDYKHPIKRSFVSRFENGVLLGSDYSALEMRIIGLFTKDPDMLQSFLNGEDIHK 811 Query: 53767 ATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARY 53588 ATA+ V+ EV ++R+ K +NFGL +G S F A + A+ ++YF Sbjct: 812 ATASIVYNKPVEEVTKEERQATKAVNFGLAFGESPFSFAGKNNMEVSEAEEIFEKYFQTK 871 Query: 53587 PGVAQYMEDTRATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADL 53408 P V +++ ++ GYV+T+ G R ++ + + R + N +QG+ + L Sbjct: 872 PSVKTSIDNVHEFVQQYGYVDTMHGHRRFIRSAQSTDKKIKNEGLRQSFNTIIQGSGSFL 931 Query: 53407 IKLSMIAVDGWLTRDQLASRMIMQVHDELVLEVPEGELSL-------VREKLP----EMM 53261 +S+ +D ++ L S++I VHD ++++ P E + + E LP + Sbjct: 932 TNMSLTYLDDFIQSRNLKSKVIATVHDSILIDCPPEEAKIMAKVTIHIMENLPFDFLKAE 991 Query: 53260 CGVAKLKVPLVAEVGAGANWEE 53195 +++ P+ A++ G N+ + Sbjct: 992 IDGKEVQYPIEADMEIGLNYND 1013 Score = 38.5 bits (88), Expect = 0.29 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Frame = -3 Query: 54931 DAAALTAFDTETTALDPML--ARLVGLSFSVEPGKAAYLPVAHRGPDMPE-QLPLDEVLA 54761 D +TA+D ET +L P ++ + LS S G+ +P+ + Q +DEVL Sbjct: 212 DGVDITAWDLETNSLKPDKEGSKPLVLSLSWRNGQGVTIPLYKSDFNWENGQDDIDEVLE 271 Query: 54760 RLKPWLESADRKKVGQHLKYDAQVL 54686 LK WL S + KV + KYD + L Sbjct: 272 LLKNWLASKEDIKVAHNGKYDIKFL 296 >ref|NP_852498.1|DNA polymerase I Length = 802 Score = 146 bits (369), Expect = 8e-34 Identities = 136/498 (27%), Positives = 212/498 (42%), Gaps = 80/498 (16%) Frame = -3 Query: 54448 HHALYPQVAREPG-LERVYREIEMPVSLVLRKMERTGVLIDD--ARLHAQSTEI-----A 54293 H+ + Q+A + E +IEMP + V+ ME G+ D A Q EI A Sbjct: 296 HYEYWSQIAAQISRYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAA 355 Query: 54292 TRLIXXXXXXXXXXXXEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLA-- 54119 R+ G ++ + F+ L++P+ K +GA S D+E L +A Sbjct: 356 ERIKQIAKETFNIDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGA-SLDQEALIDMAFM 414 Query: 54118 ----------------------------------------------EDYPLPKLLLEHRG 54077 E +P + LE Sbjct: 415 LENKLNDIDEEKYLGVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVID 474 Query: 54076 LSKLKSTYTDKLP-------RMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAE 53918 K YT L + +N +GR+H Y+ TGRL S +PN QN+P + Sbjct: 475 QLKKIQKYTTLLSSHIIGREKYLNFMSGRIHAGYSPFTE-TGRLNSFNPNGQNVPRPDND 533 Query: 53917 GRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVT 53738 +IR F+ PG + D+S ELR+MA SGD + F+ G D+HR TA+ + G + Sbjct: 534 EFKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKS 593 Query: 53737 PLEVNSDQRRIAKVINFGLIYGMSAFGLASN------LGITRDAAKLYIDRYFARYPGVA 53576 E+ +R AK NFG+ YG + L + T D ++ Y + Sbjct: 594 EAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAVKTAYKRIP 653 Query: 53575 QYMEDTRATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL- 53399 +Y A+E+GYV+T++G LP IN N R +AER A N P+QG+AAD++K Sbjct: 654 EYQRKIVLEAREQGYVQTIYGYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIMKKV 713 Query: 53398 ------SMIAVDGWLTRDQLASRMIMQVHDELVLEVPEGE--LSLVREKLPEMM--CGVA 53249 S+ +G L+ ++ MI Q+HDE++ E+ + + V +++ ++M V Sbjct: 714 QNEIYESIGKQEGVLSHG--SADMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVP 771 Query: 53248 KLKVPLVAEVGAGANWEE 53195 VP+ AE G W E Sbjct: 772 GFPVPIEAEGSVGYRWGE 789 >ref|NP_542563.1|RTCB-like protein Length = 454 Score = 132 bits (331), Expect = 2e-29 Identities = 135/451 (29%), Positives = 188/451 (41%), Gaps = 70/451 (15%) Frame = +2 Query: 243893 VEDEARAQLRNTAQMPFIFGHVAVMPDVH--LGKGSTIGSVIPTKGAIIPAAVGVDIGCG 244066 VED + +++ V MPD H LG +G +P +IP VG DIGCG Sbjct: 19 VEDGLQEEIQEMVDHEAFQNPVKFMPDCHGGLGPACIVGFSMPLTDRVIPKTVGGDIGCG 78 Query: 244067 MMAARTTLTAADLPDSLGGLRSA---IECAVPHGRAPGRRDPGA-------WGDRTPA-- 244210 M AAR ++ AD P + R+ + VP G ++ W Sbjct: 79 MTAARLDVSKADQPSDIDDFRAVNKEVRDRVPMGTGRVHKEQKVELEWSFPWWKANEKLL 138 Query: 244211 ----AVTDAWKSLQPGFQRIVDKYPKLAKTN----HYA--HLGTLGTGNHFIEVCIDE-A 244357 A+ ++S G R + K+ K YA LGTLG+GNHFIE+ E + Sbjct: 139 HFYDAMDFDYESRDEGMFR-PSYFEKMCKRVGIDVDYAIRSLGTLGSGNHFIELAESEVS 197 Query: 244358 DRVWFMLHSGSRGVGNAIGSLFIELA----QADMR------------------------- 244450 D +W ++HSGSR +G + S + E A AD++ Sbjct: 198 DEMWVVVHSGSRNLGQKVASYWQEKATEHRDADVKWSEMGERLKHYTNPDGSPDWEKIRL 257 Query: 244451 ----QHIANLPDRNLAYFTEGSRHFD-DYV---EAVGW------AQDYARRNRQAMMDAV 244588 + I + +Y + +R+ D DY+ EA G+ AQ YA NR M+ V Sbjct: 258 YNEGEEIERIGSEIESYSPDSNRNKDLDYLEGREAYGYYYDMMLAQTYASFNRLLMVQEV 317 Query: 244589 IGAARGVIAKPFSVDEHAVNCHHNYVQRERHFGEDVLVTRKGAVSAQKGQLGIIPGSMGA 244768 I K +N HNYV E +V RKG+ AQ G+L IP +M Sbjct: 318 AETLDASITK-------FLNSPHNYVDFED------MVIRKGSTRAQNGELFTIPMNMED 364 Query: 244769 KSFIVRGLGNPESFCSCSHGAGRTMSRTEAKRRFTADDQAKA--TQGVECRKDAGVVDEI 244942 + + RG GNPE S HGAGR SR A F AD+ K G + G DE+ Sbjct: 365 GTLLCRGRGNPEYNYSAPHGAGRLGSRGWAHSEFDADEARKRMYDNGTYSARVPG--DEV 422 Query: 244943 PMAYKDIDAVMAAQRSLVEVVHTLRQVVCVK 245035 P AYK + + EVV L+ V+ K Sbjct: 423 PEAYKPPELIEEHITPTAEVVDRLKPVINFK 453 >ref|NP_817633.1|gp44 Length = 604 Score = 128 bits (322), Expect = 2e-28 Identities = 93/348 (26%), Positives = 165/348 (47%), Gaps = 2/348 (0%) Frame = -3 Query: 54238 NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLA-EDYPLPKLLLEHRGLSKLK 54062 N+ SP Q+ + + + + ++T +G P D+ +L +L E PL + + E + K + Sbjct: 269 NVNSPIQVAEALMRR-GVKIKERTETGQPKVDKVLLDRLIKEGDPLAEAITEAKKWGKWE 327 Query: 54061 STYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASP 53882 T+ K + R H N A T R++ Q +P + +R F+A Sbjct: 328 KTWVRKFLDS-RDSKDRCHANINPLQARTARMSITGIPAQTLP---SGDWLVRRCFLADE 383 Query: 53881 GHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIA 53702 G + S DY ELR++A +SGD ++++AF G D+H TA + + +S +R+ A Sbjct: 384 GQLMASVDYQAQELRVLAALSGDRTMIQAFKDGADLHLMTARAAWPDREITKDSPERKYA 443 Query: 53701 KVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVET 53522 K +NFG +YG A +A G+ +AAK +D + YPGV + + A + G++ T Sbjct: 444 KTVNFGRVYGGGAKTVAEQTGLDMEAAKQVVDGFDRAYPGVQRLSAKLQREASQNGHIVT 503 Query: 53521 VFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDQLASRMI 53342 GRRL P + +A+N +Q T+ D+ ++I L + Sbjct: 504 PKGRRL----------PVDPSRAYSALNYLIQSTSRDVTGEALIR----LHEAGFTKYLR 549 Query: 53341 MQVHDELVLEVPEGELSLVREKLPEMMC-GVAKLKVPLVAEVGAGANW 53201 + +HDE++ VPE + +++ +M + + + EVG G +W Sbjct: 550 LPIHDEILASVPEDKAQWGAQEIARLMAEQMGPVLIGTDPEVG-GRSW 596 >ref|NP_046860.1|DNA polymerase Length = 607 Score = 122 bits (307), Expect = 1e-26 Identities = 104/406 (25%), Positives = 179/406 (44%), Gaps = 6/406 (1%) Frame = -3 Query: 54460 TLQLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLI 54281 T ++ AL P V P + R E +S + ++R G L+D S ++A + + Sbjct: 200 TARICSALAPLV---PDVSRPLVPYEHKISEICSYIDRRGFLLDVE----YSQQLADKWL 252 Query: 54280 XXXXXXXXXXXXEFNLGSPKQIGQIF--FEKLQLPVVKKTPSGAPSTDE----EVLQKLA 54119 E+ + + FE+L T SG D+ +++ Sbjct: 253 GEQQVWEAVLLNEYGIEKVNATEDVAEAFEELGHKFTAFTDSGKRKVDKGFYADMIAAGG 312 Query: 54118 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQN 53939 E L +++ E + L K ++++ + R HT A T R++ Q Sbjct: 313 EKAHLAEMVQEAKKLGKWRTSWVQTFLD-TRDSEDRCHTFVNPLQARTSRMSITGIPAQT 371 Query: 53938 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATA 53759 +P A +R F+A PGH + S DY ELR++A +SGD ++++AF G D+H TA Sbjct: 372 LP---ASDWTVRRCFLADPGHVMASIDYQAQELRVLAALSGDRTMIQAFKDGADLHLMTA 428 Query: 53758 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGV 53579 FG + + +R+ AK +NFG +YG A +A GI+ + AK +D + YPGV Sbjct: 429 RAAFG-DHITKDDPERKYAKTVNFGRVYGGGANTVAEQTGISIETAKQVVDGFDKAYPGV 487 Query: 53578 AQYMEDTRATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 53399 +Y AK GY+ GRRL P ++ +A+N +Q T+ D+ Sbjct: 488 TRYSRKLANEAKRNGYIINPMGRRL----------PVDRSRTYSALNYQIQSTSRDVTCK 537 Query: 53398 SMIAVDGWLTRDQLASRMIMQVHDELVLEVPEGELSLVREKLPEMM 53261 ++I L + + +HDE+V +P + + ++ +M Sbjct: 538 ALIR----LHEAGFTPYLRLPIHDEIVASLPAEKANWGAREIARLM 579 >ref|NP_075308.1|gp41 Length = 608 Score = 119 bits (298), Expect = 1e-25 Identities = 94/378 (24%), Positives = 171/378 (45%), Gaps = 3/378 (0%) Frame = -3 Query: 54385 EMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIXXXXXXXXXXXXEFNLGSPKQIGQI 54206 E ++ V+ +ERTG L+D S +++ ++ + + S ++ Sbjct: 221 EHKLAEVMSYVERTGFLLDVD----YSEKLSADMLRKSEHYTAVARYAYGVDSVNSTEKL 276 Query: 54205 F--FEKLQLPVVKKTPSGAPSTDEEVLQKLAED-YPLPKLLLEHRGLSKLKSTYTDKLPR 54035 E+ + + +T +G + E+L+ LAE+ L K +E + + T+ Sbjct: 277 ADGLERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSWEKTWVRNFIE 336 Query: 54034 MVNPTTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADY 53855 RVH A T R+++N+P+ QN+P A +R F+A PG +VS DY Sbjct: 337 R-RDANDRVHPGINPLQARTARMSTNNPSAQNLP---AGDWMVRRCFLADPGQLMVSVDY 392 Query: 53854 SQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY 53675 ELR++A ++ D ++++AF D+H+ TA + + R++ K++NF ++ Sbjct: 393 QAQELRVLAALANDRTMIQAFKDNADLHQITA---------DASGVDRKVGKMVNFAYVF 443 Query: 53674 GMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWLP 53495 G +A+ GIT AK I + YP V + + A GYV T GRRL + Sbjct: 444 GSGPSTIAAQAGITFPEAKRVIAGFEQSYPEVTALSKSLQREAANLGYVITPTGRRLPVD 503 Query: 53494 EINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDQLASRMIMQVHDELVL 53315 G AA+N +Q T+ D+ +++ L + + + +HDE++ Sbjct: 504 PDRG----------YAALNYMVQSTSRDVTASAVLR----LHEAGMTPMIRLVIHDEVLA 549 Query: 53314 EVPEGELSLVREKLPEMM 53261 VPE E +++ +M Sbjct: 550 SVPEAEAEATAKEIGRIM 567 >ref|NP_046572.1|ABC transporter Length = 705 Score = 116 bits (290), Expect = 1e-24 Identities = 102/441 (23%), Positives = 195/441 (44%), Gaps = 1/441 (0%) Frame = +3 Query: 129687 IITLTLKMMSEIAAASFHRVQRFSTDWHANSFAGSTVRKITRGIWALDLLNDTVLIALLP 129866 II L+ K+ E++ F++V + ++ N G + + GI+ D + + A++ Sbjct: 230 IIKLSYKVDKEMSNVYFNKVTKLPINFFENREDGEVISRFNDGIYIKDFFSANFVTAII- 288 Query: 129867 SVAMLVGATVLLGTHWPVMGLVVGAGSLLYIAVTVAVSLGIVAPAARLGNLWDTRMGGAL 130046 + +++G V+L ++ L + LL + + + +L + L Sbjct: 289 DIILILGLGVILYRTNNILFLTIILPILLLSCLAILFFDHLKKKNQKLMED-KAKSTSLL 347 Query: 130047 ADAVSCNAVVKAFGAETREEARLARVIDKWRQRTRRTWVRGTFNGGLQGAMLVAMQAAMI 130226 + + V + + + DK T N L+G + + ++ Sbjct: 348 INFLKNMTTVYSLNKTSFFLEKFHLTYDKQLNSTFSVAKAVISNEILKGLIQNSFTIIIL 407 Query: 130227 GVALRLWMNDEASVGDIAFALTMFFMLQGYLRDVGMHIRNLQRSVNDMEELVALERQPLG 130406 V R +ND S+G + F T+ L L + +LQ++ + P+ Sbjct: 408 WVGTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHVASIRFFDVVNYPVQ 467 Query: 130407 IDDRPGAPAIRIGQGEIRFEHVTFRYGNHPVP-LYDDFSMRIAPGERVGLVGHSGSGKTT 130583 D + Q + V G P+ + +D ++ + ++V ++G SG+GK+T Sbjct: 468 QDSNENLTELDFIQN---IKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKST 524 Query: 130584 FIKLIQRLYDVSGGRITIDGQDIAQVRQDSLRSQIAIVQQEPVLFHRTLAENIAYARPGA 130763 F K + +LY V I ++G DI + S+R +I + + P LF T+ EN+ Sbjct: 525 FAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEI-F 583 Query: 130764 SRADIERAARLASAHDFIAALPDGYDTLVGERGIKLSGGERQRVAIARAFLADAPILILD 130943 + +IE A ++ H+FI L Y + E G LS G++QR+A+ARA L +LILD Sbjct: 584 DQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILD 643 Query: 130944 EATSSLDSESELLIQQAMERL 131006 E+ S++D ++ LI + + R+ Sbjct: 644 ESLSNIDPDNTKLIYETLHRM 664 Score = 59.7 bits (143), Expect = 1e-07 Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 3/177 (1%) Frame = +1 Query: 66847 RVVLFGPSGAGKSMTLQAIAGLLTPDAGTITLNGEPLFDAARRIDVPTRERRVAYLFQDY 67026 +V++ G SG GKS ++++ L +I LNG + R D + +R+ Y+ ++ Sbjct: 511 KVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDI----NRYDHLSIRKRIVYIDENP 566 Query: 67027 ALFPHLNVRQNIAFGLTSGLRNPRAKTVPPEVAYWLRAFDLESL--AGQYPSQLSGGQKQ 67200 LF +++N+ G + + ++ D + + S LS GQKQ Sbjct: 567 FLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQ 625 Query: 67201 RVALARALVAQPRILLLDEPFAALDGAMRQRMRHELAELQARLDIPMVLISH-DPDD 67368 R+ALARA++ QP++L+LDE + +D + + E R+D ++LI+H DP + Sbjct: 626 RLALARAILHQPQVLILDESLSNIDPDNTKL----IYETLHRMDCLIILITHNDPSN 678 Score = 44.7 bits (104), Expect = 0.004 Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 3/63 (4%) Frame = -1 Query: 208299 SHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE---LVGEVLKVMQKLAEEGRTMVV 208129 S+LS GQ+QR+A+ARA+ +P+V++ DE S +DP+ L+ E L M L +++ Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCL------IIL 670 Query: 208128 VTH 208120 +TH Sbjct: 671 ITH 673 >ref|YP_024986.1|DNA polymerase I Length = 633 Score = 110 bits (274), Expect = 8e-23 Identities = 155/637 (24%), Positives = 264/637 (41%), Gaps = 63/637 (9%) Frame = -3 Query: 54913 AFDTETTALDPMLARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVLARLKPWLESA 54734 A+DTE T L + ++ G S + G++ Y + + PD + L +E A Sbjct: 24 AYDTECTGLKYKVDKVFGFSVATPDGQSGYFDIREQ-PDAVQWL------------VEQA 70 Query: 54733 DRKK---VGQHLKYDAQVLANYDIAL-------NGI------EHDTLLESYVVESHRTHD 54602 D K V + +D ++ + I L GI EH++ + + + Sbjct: 71 DSYKGTIVCHNASFDYRMSLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKAGDYS 130 Query: 54601 MDSLALRHLGVKTIK--YEDVA----GKGAKQI---GFXXXXXXXXXXXXXXXXDITLQL 54449 +D LA +++G + Y+++A GK ++ ++TL+L Sbjct: 131 LDYLAKKYVGAQKYAEIYDELAAMFGGKATRKTQMPNLYRAPSGLVRKYACPDAELTLEL 190 Query: 54448 HHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIXXXX 54269 +A+ GLE++ E V L + E GV +D ++ + Sbjct: 191 WLEQQELIAKR-GLEKIVA-FERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQA 248 Query: 54268 XXXXXXXXEFNLGSPKQIGQIFFEKLQL--------PVVKKTPSGAPSTDEEVLQKLAED 54113 EFN SPKQ+ ++F K + V+++T +G P D + L+ + + Sbjct: 249 KMFQLAGREFNPNSPKQVREVFGAKEERGVWTSRDGTVLERTATGNPCLDADALRAMKD- 307 Query: 54112 YPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAV-----TGRLASNDPN 53948 PL +LE R K K T+ K + + GRV+ N Q TGRL+ P Sbjct: 308 -PLAAAVLELRSNIKTKDTFLAKHV-VEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPA 365 Query: 53947 LQNIPVRTAE-GRRIREAFIASPGHRIVSADYSQIELRIMAHISG--DASLLRAFSQGE- 53780 LQ IP R I+ AF+ G + +D + E+RI AH+ + ++ RA+++ Sbjct: 366 LQQIPSRNKRIAAIIKPAFLPEEGQLWLDSDMASFEVRIFAHLVAAYNPAIARAYAENPE 425 Query: 53779 -DIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRD-------- 53627 D+H+ ++ G+ P + + AK +N G+I+ +A +LG+ + Sbjct: 426 LDLHQ-WVGDLMGI-PRNASYSGQANAKQMNLGMIFNRGDGAVADSLGMPWEWCEFTDKK 483 Query: 53626 -----------AAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWLPEINGG 53480 AK I Y + GV + A+E+G+++T GRRL P Sbjct: 484 GDLIRYKKAGPEAKAVIAAYHTQIQGVKTLATRAQKIAEERGWIQTAHGRRLRFP----- 538 Query: 53479 NGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDQLASRMIMQVHDELVLEVPEG 53300 NG + A I Q TAAD K + + ++ L D MI+ HD + V E Sbjct: 539 NGYKSYKASGILI----QATAADENKENWLRIEDALGSD---GSMILNTHDSYSMSVDE- 590 Query: 53299 ELSLVREKLPEMMCGVAKLKVPLVAEV-GAGANWEEA 53192 + E++ + + L+VPL+ E G G NW EA Sbjct: 591 NWKPIWERVKKAV-ERQTLRVPLLLEFDGVGKNWAEA 626 >ref|NP_039708.1|predicted 66.2Kd protein Length = 595 Score = 110 bits (274), Expect = 8e-23 Identities = 84/314 (26%), Positives = 138/314 (43%), Gaps = 1/314 (0%) Frame = -3 Query: 54199 EKLQLPVVKKTPSGAPSTDEEVLQKLAED-YPLPKLLLEHRGLSKLKSTYTDKLPRMVNP 54023 E++ + + +T +G + +L KL ED L + E + L K + T+ K Sbjct: 281 EEMGVKITGRTETGKRQVNAALLDKLVEDGNELAAIAQEAKKLGKWRKTWVQKFID-TRD 339 Query: 54022 TTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIE 53843 + R HT A T R++ Q +P + +R FIA PG + S DY E Sbjct: 340 SEDRCHTFINPLQARTSRMSITGIPAQTLP---SSDWIVRRCFIAEPGDVMASVDYQAQE 396 Query: 53842 LRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSA 53663 LR++A +SGD +++ AF G D+H+ TA + R++ K NF +YG A Sbjct: 397 LRVLAALSGDRNMIEAFENGADLHQMTA---------DAAQVPRKVGKTANFQKVYGGGA 447 Query: 53662 FGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWLPEING 53483 LA +GI+ AK + + A YPGV + + A GY+ GRRL Sbjct: 448 KALAEAVGISIPVAKRVHEAFSATYPGVERLSKKLAMEAGRNGYIVNAMGRRL------- 500 Query: 53482 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDQLASRMIMQVHDELVLEVPE 53303 P + +A+N +Q ++ D+ ++I L + + +HDE+V +P Sbjct: 501 ---PVDSSRTYSALNYMIQSSSRDVTCRALIR----LHEAGYTPYLRLPIHDEIVASLPA 553 Query: 53302 GELSLVREKLPEMM 53261 E + +M Sbjct: 554 SEAERAAAHIGHLM 567 >ref|YP_024429.1|DNA polymerase I Length = 633 Score = 109 bits (273), Expect = 1e-22 Identities = 155/637 (24%), Positives = 264/637 (41%), Gaps = 63/637 (9%) Frame = -3 Query: 54913 AFDTETTALDPMLARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVLARLKPWLESA 54734 A+DTE T L + ++ G S + G++ Y + + PD + L +E A Sbjct: 24 AYDTECTGLKYKVDKVFGFSVATPDGQSGYFDIREQ-PDAVQWL------------VEQA 70 Query: 54733 DRKK---VGQHLKYDAQVLANYDIAL-------NGI------EHDTLLESYVVESHRTHD 54602 D K V + +D ++ + I L GI EH++ + + + Sbjct: 71 DSYKGTIVCHNASFDYRMSLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKAGDYS 130 Query: 54601 MDSLALRHLGVKTIK--YEDVA----GKGAKQI---GFXXXXXXXXXXXXXXXXDITLQL 54449 +D LA +++G + Y+++A GK ++ ++TL+L Sbjct: 131 LDYLAKKYVGAQKYAEIYDELAAMFGGKATRKTQMPNLYRAPSGLVRKYACPDAELTLEL 190 Query: 54448 HHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIXXXX 54269 +A+ GLE++ E V L + E GV +D ++ + Sbjct: 191 WLEQQELIAKR-GLEKIVA-FERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQA 248 Query: 54268 XXXXXXXXEFNLGSPKQIGQIFFEKLQLPV--------VKKTPSGAPSTDEEVLQKLAED 54113 EFN SPKQ+ ++F K + V +++T +G P D + L+ + + Sbjct: 249 KMFQLAGREFNPNSPKQVREVFGAKEERGVWTSRDGTILERTATGNPCLDADALRAMKD- 307 Query: 54112 YPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAV-----TGRLASNDPN 53948 PL +LE R K K T+ K + + GRV+ N Q TGRL+ P Sbjct: 308 -PLAAAVLELRSNIKTKDTFLAKHV-VEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPA 365 Query: 53947 LQNIPVRTAE-GRRIREAFIASPGHRIVSADYSQIELRIMAHISG--DASLLRAFSQGE- 53780 LQ IP R I+ AF+ G + +D + E+RI AH+ + ++ RA+++ Sbjct: 366 LQQIPSRNKRIAAIIKPAFLPEEGQLWLDSDMASFEVRIFAHLVAAYNPAIARAYAENPE 425 Query: 53779 -DIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRD-------- 53627 D+H+ ++ G+ P + + AK +N G+I+ +A +LG+ + Sbjct: 426 LDLHQ-WVGDLMGI-PRNASYSGQANAKQMNLGMIFNRGDGAVADSLGMPWEWCEFTDKK 483 Query: 53626 -----------AAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWLPEINGG 53480 AK I Y + GV + A+E+G+++T GRRL P Sbjct: 484 GDLIRYKKAGPEAKAVIAAYHTQIQGVKTLATRAQKIAEERGWIQTAHGRRLRFP----- 538 Query: 53479 NGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDQLASRMIMQVHDELVLEVPEG 53300 NG + A I Q TAAD K + + ++ L D MI+ HD + V E Sbjct: 539 NGYKSYKASGILI----QATAADENKENWLRIEDALGSD---GSMILNTHDSYSMSVDE- 590 Query: 53299 ELSLVREKLPEMMCGVAKLKVPLVAEV-GAGANWEEA 53192 + E++ + + L+VPL+ E G G NW EA Sbjct: 591 NWKPIWERVKKAV-ERQTLRVPLLLEFDGVGKNWAEA 626 >ref|YP_164694.1|orf59 Length = 988 Score = 108 bits (269), Expect = 3e-22 Identities = 81/266 (30%), Positives = 130/266 (48%), Gaps = 8/266 (3%) Frame = -3 Query: 54058 TYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDP-NLQNIPVRTAEGRRIREAFIASP 53882 ++ DKLP V V ++ V T RL+S+ N QN RT ++ Sbjct: 600 SFIDKLPE-VRDKDDFVKPSFNPYVTETSRLSSSGAFNAQNQTRRTDNPNDFNYSYGVKS 658 Query: 53881 GHR-------IVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVN 53723 +R +++ DYS +E+ MA +S D ++ +A +DIH+ A+ F V EV Sbjct: 659 MYRSRFKGGILLNMDYSALEIYTMAMLSKDRNMTQALLDHKDIHKHNASLGFHVPYDEVT 718 Query: 53722 SDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAK 53543 + R AK ++FG+ Y M LA +LG+ A+ D A P V Q M D++ A Sbjct: 719 KNLRTSAKKVSFGIPYSMGIKTLAKDLGVDEKEAQRIYDAILATMPQVKQAMADSQEFAA 778 Query: 53542 EKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRD 53363 Y ET+ G R L ++ R A+R A N +QG+ ++++ L +I+V + Sbjct: 779 RYKYAETLNGFRRDLSNVDSILKDVRAKAKRQAFNTEIQGSGSNIVNLGLISVHEQFCKR 838 Query: 53362 QLASRMIMQVHDELVLEVPEGELSLV 53285 L S++I VHD ++L+V EL+ V Sbjct: 839 NLKSKIIATVHDSILLDVYPPELAEV 864 >ref|YP_006556.1|Ppp Length = 230 Score = 104 bits (260), Expect = 3e-21 Identities = 75/213 (35%), Positives = 98/213 (46%), Gaps = 15/213 (7%) Frame = +1 Query: 79828 FVVGDLHGCVDVLRALLHDVRFDPARDRLFSVGDLVDRGPASETALDLLDRPWCHVVRGN 80007 +VVGDLHGC L + LH V FDPA+D L SVGDL+DRG + L+LL PW V GN Sbjct: 24 WVVGDLHGCYTRLMSELHRVDFDPAQDLLISVGDLIDRGTENVECLELLQMPWFRAVMGN 83 Query: 80008 HEEVLSLVARGKLPPDA----WRGIGGDWGADLPPER---LHAHAARVDALPLVRVIGDG 80166 HE ++ L PD W GG W L ++ A V LP + + G Sbjct: 84 HERLM----LDALSPDGNVNNWLMNGGQWFFMLDTDQEILARALVELVKRLPYIIELNTG 139 Query: 80167 PARFNVLHAEF------FGSDAELDTGSYPHDVRERLIWGRDLIQGLADP--ARQAGLSL 80322 + HA++ FG + L ++W R+ I D +G Sbjct: 140 QETIVIAHADYPDNEYQFGKEVPL----------FNVVWARERISDSMDDIGGEISGADR 189 Query: 80323 TCTGHTPVREPQRIGAQWFIDTGAFAPAGRLTL 80421 GHTPV+ P+ Q +IDTGA G LTL Sbjct: 190 FIFGHTPVKSPKTFWNQQYIDTGAVF-CGNLTL 221 >ref|NP_958232.1|gene 58 protein Length = 223 Score = 102 bits (255), Expect = 1e-20 Identities = 73/215 (33%), Positives = 106/215 (49%), Gaps = 7/215 (3%) Frame = +1 Query: 79828 FVVGDLHGCVDVLRALLHDVRFDPARDRLFSVGDLVDRGPASETALDLLDRPWCHVVRGN 80007 +VVGDLHGC L L + FD +D L SVGDLVDRG + L+L+ PW VRGN Sbjct: 16 WVVGDLHGCYTNLMKKLETIGFDTKKDLLISVGDLVDRGTENVECLELITFPWFRAVRGN 75 Query: 80008 HEEVL--SLVARGKLPPDAWRGIGGDWGADLPPER---LHAHAARVDALPLVRVIGDGPA 80172 HE+++ L RG + + W GG W +L ++ A A + LPL+ + Sbjct: 76 HEQMMIDGLSERGNV--NHWLLNGGGWFFNLDYDKEILAKALAHKAGELPLIIELVSKGK 133 Query: 80173 RFNVLHAEFFGSDAELDTGSYPHDVRERLIWGRDLIQGLADPARQ--AGLSLTCTGHTPV 80346 ++ + HA++ E P D +++IW R+ I D + G GHTP Sbjct: 134 KYVICHADYPCDKYEF---GKPVD-HQQVIWNRERISNSQDGIVKEIKGADTFIFGHTPA 189 Query: 80347 REPQRIGAQWFIDTGAFAPAGRLTLAEPRTGRTWS 80451 +P + Q +IDTGA G LTL + + W+ Sbjct: 190 VKPLKFSNQMYIDTGAVF-CGNLTLIQVQGEGAWA 223 >ref|NP_040641.1|Nin protein Length = 221 Score = 102 bits (253), Expect = 2e-20 Identities = 72/207 (34%), Positives = 105/207 (50%), Gaps = 7/207 (3%) Frame = +1 Query: 79828 FVVGDLHGCVDVLRALLHDVRFDPARDRLFSVGDLVDRGPASETALDLLDRPWCHVVRGN 80007 +VVGDLHGC L L + FD +D L SVGDLVDRG + L+L+ PW VRGN Sbjct: 16 WVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFPWFRAVRGN 75 Query: 80008 HEEVL--SLVARGKLPPDAWRGIGGDWGADLPPER---LHAHAARVDALPLVRVIGDGPA 80172 HE+++ L RG + + W GG W +L ++ A A + D LPL+ + Sbjct: 76 HEQMMIDGLSERGNV--NHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDK 133 Query: 80173 RFNVLHAEFFGSDAELDTGSYPHDVRERLIWGRDLIQGLADPARQ--AGLSLTCTGHTPV 80346 ++ + HA++ + E P D +++IW R+ I + + G GHTP Sbjct: 134 KYVICHADYPFDEYEF---GKPVD-HQQVIWNRERISNSQNGIVKEIKGADTFIFGHTPA 189 Query: 80347 REPQRIGAQWFIDTGAFAPAGRLTLAE 80427 +P + Q +IDTGA G LTL + Sbjct: 190 VKPLKFANQMYIDTGAVF-CGNLTLIQ 215 >ref|NP_047956.2|gp11 Length = 617 Score = 88.6 bits (218), Expect = 2e-16 Identities = 91/343 (26%), Positives = 146/343 (42%), Gaps = 19/343 (5%) Frame = -3 Query: 54181 VVKKTPSGAPSTDEEVLQKLA------------EDYPLPKLLLEHRGLSKLKSTYTDKLP 54038 + ++T GA D+ VL LA E PL + +L + K +TY D+ Sbjct: 286 LTQRTDGGALKVDKAVLLPLADLDRDWERIGAREPNPLAEAVLRAKRAGKWVTTYADRFA 345 Query: 54037 RMVNPTTGRVHTNYAQAVAVTGRLASN-DPNLQNIPVRTAEGRRIREAFIA-SPGHRIVS 53864 +P GR+H N A TGR++ N D Q +P + IR A + +P H + S Sbjct: 346 NNHDPH-GRIHPNINTLQARTGRMSINGDFAAQTLP---SSDWMIRRAIVGDAPDHIMGS 401 Query: 53863 ADYSQIELRIMAHISGDASLLRAFSQGE---DIHRATAAEVFGVTPLEVNSDQRRIAKVI 53693 D+ IE+R++A ++ + F G DIH TA + G LE R++ K Sbjct: 402 VDFQAIEMRVLAALADVKRMKDGFVNGGSDFDIHMYTAQLIKG---LEATKRDRKVFKGA 458 Query: 53692 NFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVE-TVF 53516 FG +YG +A G T + Y +P + + + A+ G V +V Sbjct: 459 GFGKVYGGGVATIARQTGATEAEIARAVAEYDRVFPEIKRASSRWQREARGTGLVTVSVT 518 Query: 53515 GRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDQ-LASRMIM 53339 GRRL P + A +N Q A D++ +M+ + RD L M + Sbjct: 519 GRRL----------PLDRNRTYAVVNYQCQSAARDVLGQAMLNM-----RDAGLLDYMKL 563 Query: 53338 QVHDELVLEVPEGELSLVREKLPEMMCGVAKLKVPLVAEVGAG 53210 +HDE+V P+ + + + + M + VP+VA+ G Sbjct: 564 PIHDEIVFSAPKADAKDIAREFEKCMT-MDLFGVPVVADADLG 605 >ref|NP_640280.1|DNA polymerase Length = 661 Score = 84.3 bits (207), Expect = 5e-15 Identities = 90/379 (23%), Positives = 157/379 (41%), Gaps = 13/379 (3%) Frame = -3 Query: 54376 VSLVLRKMERTGVLIDDARLHAQSTEIATRLIXXXXXXXXXXXXEFNLGSPKQIGQIFFE 54197 +S VL +E GV +D R+ + +IA+R + N S Q+ + ++ Sbjct: 210 LSPVLADIELNGVHLDKERV-CEEHDIASRRMAEVEADLMDMIDGRNPRSVPQMQEFIYD 268 Query: 54196 KLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTT 54017 L+ +KK T EEVLQ A L + ++L + + L T Sbjct: 269 VLKFKPLKKRGVEWRPTGEEVLQFEARTKKQQAFLDLKKEFAQLNADLSKNLDYFYGVVT 328 Query: 54016 GR----VHTNYAQAVAVTGRLASND--------PNLQNIPVRTAEGRRIREAFIASPGHR 53873 R + + QA VT RL+S+ P ++I ++ + + R +P Sbjct: 329 EREDCLFYAQFNQAQTVTHRLSSSGIKTKFEMYPKAKSIQLQNSPRKYKRLYSARNPDWY 388 Query: 53872 IVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVI 53693 ++ D +QIE R+ +I D + + G D+HR TA+ + EV DQR AK Sbjct: 389 VIEMDGAQIEFRVAGYIGQDTRICQDIVDGVDVHRFTASVLNHCDEEEVTKDQRTDAKPD 448 Query: 53692 NFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFG 53513 F +YG +G D Y + + +Y + Q +D + G Sbjct: 449 TFKPLYG-GQYG--------TDDQMAYYEAFRNKYQDITQAQQDWLMKVLRNKEITHPTG 499 Query: 53512 RRLWLPEINGGNGPRRQAAERAAINAPMQGTA-ADLIKLSMIAVDGWLTRDQLASRMIMQ 53336 + P + + Q + N P+Q A A++I ++++A+ + +L S ++ Sbjct: 500 ITFYYPNASMSSSGYCQDFP-SVCNYPVQNLATAEIIPIALVAIWHVMKAMKLQSFLVNT 558 Query: 53335 VHDELVLEVPEGELSLVRE 53279 VHD ++ E P EL L+ E Sbjct: 559 VHDSVISESPRDELELMYE 577 >ref|NP_943839.1|gp61 Length = 619 Score = 84.0 bits (206), Expect = 6e-15 Identities = 81/306 (26%), Positives = 129/306 (42%), Gaps = 2/306 (0%) Frame = -3 Query: 54172 KTPSGAPSTDEEVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYA 53993 +TP GA + L+ LAE PL K L + K Y K+ TGR H A Sbjct: 322 RTPKGALRATKADLEYLAEINPLAKAQLSLANIEKTLG-YLTKVSTQA-AVTGRCHPQVA 379 Query: 53992 Q-AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISG 53816 + TGR++ P LQ P + + G + S D+SQIE MA+++ Sbjct: 380 TLGASATGRMSYGSPELQQFP-------KDARPILCDDGDGLTSIDWSQIEPVTMANMAR 432 Query: 53815 DASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGI 53636 D L A+ GED+ +G L D R +KV+ +YG LA+ +G Sbjct: 433 DIDFLAAYEAGEDL--------YGPIMLAAGID-RPTSKVVLLSSMYGSGIAKLAALIGH 483 Query: 53635 TRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWLPEINGGNGPRRQAA 53456 T ++ + FA A++M A + G V T GR L P + Sbjct: 484 TEESTAQIKRQMFAAMKRSAKWMVKVEEVAAQFGRVITAGGRIL----------PVDEGG 533 Query: 53455 ERAAINAPMQGTAADLIKLSMIAVDGWLTRDQLASRMIMQVHDELVLEVP-EGELSLVRE 53279 A+N +QG+A D++ +++ + R + + + +HDE+V+ P E+ + Sbjct: 534 IFKAVNYTVQGSAYDVLANTIVE----MYRRGMTDELYLAMHDEVVVSTPVAAEVQEIMS 589 Query: 53278 KLPEMM 53261 PE + Sbjct: 590 TPPEFL 595 >ref|NP_858986.1|DNA polymerase lacking N-terminal exonuclease domain Length = 794 Score = 83.6 bits (205), Expect = 8e-15 Identities = 98/395 (24%), Positives = 156/395 (39%), Gaps = 76/395 (19%) Frame = -3 Query: 54160 GAPSTDEEVLQKLAEDYPLPKLLLEHRGLSKLKST-----YTDKLPRMVNPTTGR----- 54011 G T EEV Q LA P+ + ++ +++ YT V+P TG Sbjct: 379 GQYKTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYT------VDPETGETKGML 432 Query: 54010 --------VHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIAS-PGHRIVSAD 53858 VH VTGRL+S PNLQN+P + ++ F++ PG IV +D Sbjct: 433 SLVGSDGIVHHQLQMVNTVTGRLSSALPNLQNLP--KGDKSEVKTLFVSRFPGGFIVQSD 490 Query: 53857 YSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVT---PLEVNSDQRRI------ 53705 ++ +E+ + ++SGD +L+ G D+H A+ GV+ E D++ I Sbjct: 491 FTALEIYVQGNLSGDIALIADLRAGLDMHCKRLAQKEGVSYDYVFERAKDKKHIEYIVWN 550 Query: 53704 -----AKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKE 53540 AK +F YG A +A+ G+T D K I YPG+ +Y + T + Sbjct: 551 SKRSKAKGFSFQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTMKELER 610 Query: 53539 ----------------------KGYVETVFGRRL---------WLPEINGGNGPRRQAAE 53453 K Y T G+R WL E G + + Sbjct: 611 NLIPSKMYIASSYEAGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWE---REGVQLTFSS 667 Query: 53452 RAAINAPMQGTAADLIKLSM-IAVDGWLTRDQLASR--MIMQVHDELVL----EVPEGEL 53294 N P+QGT + +K +M + V W R R ++ VHD + EV + + Sbjct: 668 TTTKNYPVQGTGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPEVAKESM 727 Query: 53293 SLVREKLPEMMCGVA-----KLKVPLVAEVGAGAN 53204 +L+ + E + KL + + +E G N Sbjct: 728 ALLHACMEEASRYIESQFAWKLHIDVPSETSIGPN 762 >ref|NP_817817.1|gp56 Length = 609 Score = 82.8 bits (203), Expect = 1e-14 Identities = 83/313 (26%), Positives = 131/313 (41%), Gaps = 4/313 (1%) Frame = -3 Query: 54172 KTPSGAPSTDEEVLQKLAEDYPLPKLLLEHRGLSKLKST--YTDKLPRMVNPTTGRVHTN 53999 +TP GAPS +E L+ L D+P+ R L++ Y +K+ R TGR H Sbjct: 312 RTPKGAPSAAKEHLETL--DHPVAAA---QRALAQSDKVLGYLEKVSRQA-AVTGRCHPQ 365 Query: 53998 YA-QAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHI 53822 A + TGR++ P LQ P + I G + S D++QIE MA + Sbjct: 366 VAILGASATGRMSYGSPELQQFP-------KDARPIIVDDGQGLTSVDWAQIEPVTMALM 418 Query: 53821 SGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNL 53642 +GD L F + + G+ R +AKVI +YG A +A + Sbjct: 419 AGDREFLAPFFENDADLYEPIMRACGI--------DRPMAKVILLATMYGQGARSMARRI 470 Query: 53641 GITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWLPEINGGNGPRRQ 53462 G T ++A + A P +M + A G + T GR L P Q Sbjct: 471 GHTEESAAQIRRQMLAAMPASRDFMAKVESIAITHGRIVTGGGRIL----------PVDQ 520 Query: 53461 AAERAAINAPMQGTAADLIKLSMIAVDGWLTRDQLASRMIMQVHDELVLEVP-EGELSLV 53285 A+N QG+A D++ +++ +D L+ + + +HDELV++ E+ + Sbjct: 521 QGSYRAVNYICQGSAYDVLAHTIVRLD----EAGLSGHVQLAMHDELVVDTDVAAEVEHI 576 Query: 53284 REKLPEMMCGVAK 53246 PE + AK Sbjct: 577 MMTPPEFLTRWAK 589 >ref|NP_523322.1|gene 5B protein Length = 372 Score = 81.6 bits (200), Expect = 3e-14 Identities = 101/380 (26%), Positives = 152/380 (40%), Gaps = 29/380 (7%) Frame = -3 Query: 54241 FNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK----LLLEHRGL 54074 FN S I + E +P K T GAP D+EVL+ + D P + L+ E+ + Sbjct: 2 FNPSSRDHIQKKLQEAGWVPT-KFTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 60 Query: 54073 SKL--KSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQNIP-VRTAEGRRIR 53903 K +S DK G++H + AVTGR PNL IP VR+ G + R Sbjct: 61 QKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCR 120 Query: 53902 EAFIAS------PGHRIVSA--DYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVF 53747 AF A G V A D S +ELR +AH + F GE H ++ Sbjct: 121 AAFGAEHHLDGITGKPWVQAGIDASGLELRCLAH------FMARFDNGEYAHEILNGDIH 174 Query: 53746 GVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYM 53567 + R AK +G +YG + +G ++ K ++ P +A Sbjct: 175 TKNQMAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALR 234 Query: 53566 EDTRATAKEKGY----VETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 53399 E + T E + V +R W+ ++G R + AA+N +Q A + KL Sbjct: 235 ESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVR--SPHAALNTLLQSAGALICKL 292 Query: 53398 SMIAVDGWLTRDQLAS------RMIMQVHDELVLEVPEGELS-LVREKLPEMMCGVAK-- 53246 +I + L L + +HDE+ + E++ V E E M V + Sbjct: 293 WIIKTEEMLVEKGLKHGWDGDFAYMAWIHDEIQVACRTEEIAKTVIEVAQEAMRWVGEHW 352 Query: 53245 -LKVPLVAEVGAGANWEEAH 53189 + L E GANW+E H Sbjct: 353 NFRCLLDTEGKMGANWKECH 372 >ref|NP_523320.1|DNA polymerase Length = 704 Score = 81.6 bits (200), Expect = 3e-14 Identities = 101/380 (26%), Positives = 152/380 (40%), Gaps = 29/380 (7%) Frame = -3 Query: 54241 FNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK----LLLEHRGL 54074 FN S I + E +P K T GAP D+EVL+ + D P + L+ E+ + Sbjct: 334 FNPSSRDHIQKKLQEAGWVPT-KFTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 392 Query: 54073 SKL--KSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQNIP-VRTAEGRRIR 53903 K +S DK G++H + AVTGR PNL IP VR+ G + R Sbjct: 393 QKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCR 452 Query: 53902 EAFIAS------PGHRIVSA--DYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVF 53747 AF A G V A D S +ELR +AH + F GE H ++ Sbjct: 453 AAFGAEHHLDGITGKPWVQAGIDASGLELRCLAH------FMARFDNGEYAHEILNGDIH 506 Query: 53746 GVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYM 53567 + R AK +G +YG + +G ++ K ++ P +A Sbjct: 507 TKNQMAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALR 566 Query: 53566 EDTRATAKEKGY----VETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 53399 E + T E + V +R W+ ++G R + AA+N +Q A + KL Sbjct: 567 ESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVR--SPHAALNTLLQSAGALICKL 624 Query: 53398 SMIAVDGWLTRDQLAS------RMIMQVHDELVLEVPEGELS-LVREKLPEMMCGVAK-- 53246 +I + L L + +HDE+ + E++ V E E M V + Sbjct: 625 WIIKTEEMLVEKGLKHGWDGDFAYMAWIHDEIQVACRTEEIAKTVIEVAQEAMRWVGEHW 684 Query: 53245 -LKVPLVAEVGAGANWEEAH 53189 + L E GANW+E H Sbjct: 685 NFRCLLDTEGKMGANWKECH 704 >ref|YP_024841.1|Pas55 Length = 1415 Score = 80.5 bits (197), Expect = 7e-14 Identities = 87/338 (25%), Positives = 147/338 (43%), Gaps = 10/338 (2%) Frame = -3 Query: 54172 KTP-SGAPSTDEEVLQKLAEDYP-LPKLLLEHRGLSKL---KSTYTDKLPRMVNPTTGRV 54008 +TP SG T E ++ LA +Y LPK+ + + ++ +S Y + M GRV Sbjct: 1106 RTPNSGQFDTSGEHMKHLAREYHHLPKVREIAKHVFRIVGARSVYQTLMDNM--SPDGRV 1163 Query: 54007 HTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRIREA-FIASPGHRIVSADYSQIELRIM 53831 H A TGR + P L + R GR + A + PG ++SAD SQ+++R + Sbjct: 1164 HPKIGFDQA-TGRWSVTRPGLTVLGKRG--GRHVERAVLLPDPGEVLMSADLSQVDMRAV 1220 Query: 53830 AHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLA 53651 A +S D + + + +D H A E+FG +D+R AK I G YG ++ Sbjct: 1221 AGLSQDLAYIEMLKK-DDPHAEIAKELFG------TADRREEAKAIGHGWNYGRGIKAIS 1273 Query: 53650 SNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWLPEINGGNGP 53471 I + + R+ + ++ + RA A+ ++ FGR + Sbjct: 1274 EGQEIEPALVRRFDASMRERFGRLVEWQTEVRAVAEAGQLLDNGFGRLM----------- 1322 Query: 53470 RRQAAERAAINAPM---QGTAADLIKLSMIAVDGWLTRDQLASRMIMQVHDELVLEVPEG 53300 R +RA P QG A D++ ++ +D ++ + Q+HDE+V VP Sbjct: 1323 -RADPQRAHTQGPALMGQGAARDIMMTGLLRLD-----RRILPMLRAQIHDEIVFSVPVA 1376 Query: 53299 ELSLVREKLPEMMCGVAKLKVPLVAEVG-AGANWEEAH 53189 E V + E + VP++A+V G +W + Sbjct: 1377 EAEEVGRAVVEAL-SFEWRGVPILADVSKTGTDWSRCY 1413 >ref|NP_813726.1|gp11 Length = 624 Score = 79.3 bits (194), Expect = 2e-13 Identities = 101/429 (23%), Positives = 169/429 (39%), Gaps = 28/429 (6%) Frame = -3 Query: 54412 GLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIXXXXXXXXXXXXEFNL 54233 G+ + E ++ + M+R G+++D + + R++ + + Sbjct: 212 GVRAALTDYEHEIAYMCAYMQRAGLVLD-----LEYVDTLRRMLREEEDKYATIAASWGV 266 Query: 54232 GSPKQIGQIFFEKLQL--PVVKKTPSGAPSTDEEVLQKLA------------EDYPLPKL 54095 S Q+ L + + + T GA ++VL LA E PL + Sbjct: 267 ESVNSGAQVSEALLAMGETLTETTDGGALKVSKKVLLPLADLDRDWERIGAREPNPLAEA 326 Query: 54094 LLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLA-SNDPNLQNIPVRTAE 53918 +L + K S+Y DK +P GR+H A TGR++ S D Q +P + Sbjct: 327 VLRAKRAGKWVSSYADKFAENHDPL-GRIHPTINTLQARTGRMSISGDFAAQTLP---SS 382 Query: 53917 GRRIREAFIAS-PGHRIVSADYSQIELRIMAHISGDASLLRAF----------SQGEDIH 53771 IR A + P H + S D+ IE+R++A ++G + F G DIH Sbjct: 383 DWMIRRAVLGDKPDHIVGSVDFQAIEMRVLAALAGVRRMTEGFLDPDPDPSVYPDGFDIH 442 Query: 53770 RATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFAR 53591 TA + G P D R++ K FG +YG ++ G + Y Sbjct: 443 MYTARLIKG--PNATKRD-RKVFKGAGFGKVYGGGIKTISRQTGAPEHEIARAVAEYDRV 499 Query: 53590 YPGVAQYMEDTRATAKEKGYVE-TVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAA 53414 +P + + + A+ +G V T GR L P + A +N Q TA Sbjct: 500 FPEIKRASSKWQREARARGCVTVTPTGRIL----------PLDRNRMYAVVNYKCQSTAR 549 Query: 53413 DLIKLSMIAVDGWLTRDQ-LASRMIMQVHDELVLEVPEGELSLVREKLPEMMCGVAKLKV 53237 D++ +MI + RD L M + +HDE+V P+ + + + M + V Sbjct: 550 DVLGQAMINM-----RDAGLLEYMKLPIHDEIVFSAPKSDAQDIAREFERCMT-MDLFGV 603 Query: 53236 PLVAEVGAG 53210 P+VAE G Sbjct: 604 PVVAEADLG 612 >ref|NP_064753.1|RP DNA pol Length = 580 Score = 77.8 bits (190), Expect = 4e-13 Identities = 101/424 (23%), Positives = 159/424 (37%), Gaps = 24/424 (5%) Frame = -3 Query: 54388 IEMPVSLVLRKMERTGV-----LIDDARLHAQSTEIATRLIXXXXXXXXXXXXEFNLGSP 54224 I +PV V+ K ++ G L++ + T+IA EFNLGSP Sbjct: 196 IAVPVKEVIIKRKKDGSIYSNQLLEGCNVQGDYTKIAWE--------------EFNLGSP 241 Query: 54223 KQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHRGLSKLKSTYTD- 54047 Q+ + P VK + E L + + P +GL K T Sbjct: 242 AQVNKRLDRLGWKPTVKTKSGNSYKICPENLATIPDTAPEAV-----KGLKAWKVLETRW 296 Query: 54046 KLPR---MVNPTTGRVHTNYAQAVAVTGRLASNDPNLQNIP------------VRTAEGR 53912 KL + + TGRVH AVT R A PN+ NIP + G Sbjct: 297 KLAQEWLQKSQETGRVHGRVILTGAVTHRAAHQGPNMANIPSVPHGKDGILWKMEGMYGA 356 Query: 53911 RIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPL 53732 R+AF G +V D + I+LR++AH D G DIH F L Sbjct: 357 ECRQAFKVPEGKLLVGTDAAGIQLRVLAHYMNDPIYTEQVIDG-DIH------TFNKEAL 409 Query: 53731 EVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRA 53552 R AK + + G +AS LG A + ++ P + + ++ + Sbjct: 410 GRYCKDRPTAKTFIYAFLLGAGTGMIASILGCNNRQANEAMANFYEAIPSLKK-LKSQAS 468 Query: 53551 TAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWL 53372 A G+++ + GR L R ++ A++ +QG +++L+ + Sbjct: 469 QAASMGWMKGLDGRVL------------RIGSDHLALSVYLQGGETVIMRLANVFWQRQA 516 Query: 53371 TRDQLASRMIMQVHDELVLEVPEGELSLVREKLPEMMCGVA---KLKVPLVAEVGAGANW 53201 ++ + + VHDE EV E + + E + + KL P+ E G NW Sbjct: 517 KKEGINFKQCAWVHDEWQTEVDEDQAQRLGEIQVQAIKDAGTFFKLNCPMDGEAKIGKNW 576 Query: 53200 EEAH 53189 E H Sbjct: 577 LETH 580 >ref|NP_041982.1|DNA polymerase Length = 704 Score = 77.0 bits (188), Expect = 7e-13 Identities = 100/380 (26%), Positives = 149/380 (39%), Gaps = 29/380 (7%) Frame = -3 Query: 54241 FNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK----LLLEHRGL 54074 FN S I + E +P K T GAP D+EVL+ + D P + L+ E+ + Sbjct: 334 FNPSSRDHIQKKLQEAGWVPT-KYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 392 Query: 54073 SKL--KSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQNIP-VRTAEGRRIR 53903 K +S DK G++H + AVTGR PNL IP VR+ G + R Sbjct: 393 QKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCR 452 Query: 53902 EAFIAS------PGHRIVSA--DYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVF 53747 AF A G V A D S +ELR +AH + F GE H ++ Sbjct: 453 AAFGAEHHLDGITGKPWVQAGIDASGLELRCLAH------FMARFDNGEYAHEILNGDIH 506 Query: 53746 GVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYM 53567 + R AK +G +YG + +G ++ K ++ P +A Sbjct: 507 TKNQIAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALR 566 Query: 53566 EDTRATAKEKGY----VETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 53399 E + T E + V +R W+ ++G R + AA+N +Q A + KL Sbjct: 567 ESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVR--SPHAALNTLLQSAGALICKL 624 Query: 53398 SMIAVDGWLTRDQLAS------RMIMQVHDELVLEVPEGELS-LVREKLPEMMCGVA--- 53249 +I + L L + VHDE+ + E++ +V E E M V Sbjct: 625 WIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHW 684 Query: 53248 KLKVPLVAEVGAGANWEEAH 53189 + L E G NW H Sbjct: 685 NFRCLLDTEGKMGPNWAICH 704 >ref|NP_853574.1|gp14 Length = 849 Score = 76.6 bits (187), Expect = 1e-12 Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 7/249 (2%) Frame = -3 Query: 53950 NLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIH 53771 N+ NIP R +R+ FIA G I+ D + +ELR+++H D G DIH Sbjct: 542 NVVNIPARGLYP--LRDLFIAGKGKMILGCDGAGLELRVLSHFMNDPEYQEIVLHG-DIH 598 Query: 53770 RATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFAR 53591 L+ +R +AK + +YG LA+ G+T D K + R+ Sbjct: 599 THNQ--------LKAGLPKRDMAKTFIYAFLYGSGIANLAAVCGVTEDEMKEVVARFEIE 650 Query: 53590 YPGVAQYMEDTRATAKEKGYVETVFGRRLW-LPEINGGNGPRRQAAERAAINAPMQGTAA 53414 P +A+ E+ A + GY++ G W ++GG + E +N +Q T + Sbjct: 651 LPSLARLRENVIAAGNKFGYLQAPDGH--WGRIRMSGG-----ELKEHTMLNVLLQMTGS 703 Query: 53413 DLIKLSMIAVDGWLTRDQLASRM------IMQVHDELVLEVPEGELSLVREKLPEMMCGV 53252 +K +++ + R+ +A + VHDE+ +EVPE E+ + +LP + G Sbjct: 704 LCMKYALVKAFAVMRREGVALDNLGNPCGVANVHDEIQMEVPEEEVLYLDYELPFTLEGF 763 Query: 53251 AKLKVPLVA 53225 K + A Sbjct: 764 ESEKQAIKA 772 >ref|NP_848283.1|DNA polymerase Length = 704 Score = 75.1 bits (183), Expect = 3e-12 Identities = 98/380 (25%), Positives = 149/380 (39%), Gaps = 29/380 (7%) Frame = -3 Query: 54241 FNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK----LLLEHRGL 54074 FN S I + E +P K T GAP D+EVL+ + D P + L+ E+ + Sbjct: 334 FNPSSRDHIQKKLQEAGWVPT-KYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 392 Query: 54073 SKL--KSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQNIP-VRTAEGRRIR 53903 K +S DK G++H + AVTGR PNL IP VR+ G + R Sbjct: 393 QKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCR 452 Query: 53902 EAFIAS------PGHRIVSA--DYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVF 53747 AF A G V A D S +ELR +AH + F GE H ++ Sbjct: 453 AAFGAEHHLDEITGKPWVQAGIDASGLELRCLAH------FMARFDNGEYAHEILNGDIH 506 Query: 53746 GVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYM 53567 + R AK +G +YG + +G ++ K ++ P +A Sbjct: 507 TKNQIAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALR 566 Query: 53566 EDTRATAKEKGY----VETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 53399 E + T E + V +R W+ ++G R + +A+N +Q A + KL Sbjct: 567 ESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVR--SPHSALNTLLQSAGALICKL 624 Query: 53398 SMIAVDGWLTRDQLAS------RMIMQVHDELVLEVPEGELS-LVREKLPEMMCGVA--- 53249 +I + L L + VHDE+ + E++ +V + E M V Sbjct: 625 WIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIDTAQEAMRWVGDHW 684 Query: 53248 KLKVPLVAEVGAGANWEEAH 53189 + L E G NW H Sbjct: 685 NFRCLLDTEGKMGPNWAVCH 704 >ref|NP_052094.1|5B protein Length = 384 Score = 67.8 bits (164), Expect = 5e-10 Identities = 89/358 (24%), Positives = 141/358 (39%), Gaps = 29/358 (8%) Frame = -3 Query: 54175 KKTPSGAPSTDEEVLQKLAEDYPLPK----LLLEHRGLSKL--KSTYTDKLPRMVNPTTG 54014 K T GAP D+EVL+ + D P + L+ E+ + K ++ DK G Sbjct: 35 KFTEKGAPVVDDEVLEHVRVDDPEKQACIDLIKEYLMIQKRIGQAAEGDKAWLRYVQDDG 94 Query: 54013 RVHTNYAQAVAVTGRLASNDPNLQNIP-VRTAEGRRIREAFIAS------PGHRIVSA-- 53861 ++H AVTGR + PNL +P VR+ G + R AF A G V A Sbjct: 95 KIHGAVNPNGAVTGRATHSFPNLAQVPGVRSPYGEQCRSAFGAEHHLDGITGKPWVQAGI 154 Query: 53860 DYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGL 53681 D S +ELR +AH + F GE + ++ R AK +G Sbjct: 155 DASGLELRCLAH------FMARFDNGEYANEILNGDIHTKNQNAAELPTRDNAKTFIYGF 208 Query: 53680 IYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEK----GYVETVFG 53513 +YG + +G ++ K ++ P +A E + + G + V Sbjct: 209 LYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALREAIQQSLVNSSAWIGGEQKVQW 268 Query: 53512 RRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDQLAS------ 53351 +R W+ ++G R + AA+N +Q A + KL +I + L L Sbjct: 269 KRRWIKGLDGRKVHVR--SPHAALNTLLQSAGALICKLWIIKTEEMLIEKGLKHGWDGDF 326 Query: 53350 RMIMQVHDELVLEVPEGELS-LVREKLPEMMCGVAK---LKVPLVAEVGAGANWEEAH 53189 + +HDE+ + E++ +V E E M V + + L E G NW H Sbjct: 327 AQMGWIHDEVQIACRTEEVAKVVVEVAQEAMRWVGEHWNFRCRLDTEGKIGPNWAVCH 384 >ref|NP_052093.1|DNA polymerase Length = 704 Score = 67.8 bits (164), Expect = 5e-10 Identities = 89/358 (24%), Positives = 141/358 (39%), Gaps = 29/358 (8%) Frame = -3 Query: 54175 KKTPSGAPSTDEEVLQKLAEDYPLPK----LLLEHRGLSKL--KSTYTDKLPRMVNPTTG 54014 K T GAP D+EVL+ + D P + L+ E+ + K ++ DK G Sbjct: 355 KFTEKGAPVVDDEVLEHVRVDDPEKQACIDLIKEYLMIQKRIGQAAEGDKAWLRYVQDDG 414 Query: 54013 RVHTNYAQAVAVTGRLASNDPNLQNIP-VRTAEGRRIREAFIAS------PGHRIVSA-- 53861 ++H AVTGR + PNL +P VR+ G + R AF A G V A Sbjct: 415 KIHGAVNPNGAVTGRATHSFPNLAQVPGVRSPYGEQCRSAFGAEHHLDGITGKPWVQAGI 474 Query: 53860 DYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGL 53681 D S +ELR +AH + F GE + ++ R AK +G Sbjct: 475 DASGLELRCLAH------FMARFDNGEYANEILNGDIHTKNQNAAELPTRDNAKTFIYGF 528 Query: 53680 IYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEK----GYVETVFG 53513 +YG + +G ++ K ++ P +A E + + G + V Sbjct: 529 LYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALREAIQQSLVNSSAWIGGEQKVQW 588 Query: 53512 RRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDQLAS------ 53351 +R W+ ++G R + AA+N +Q A + KL +I + L L Sbjct: 589 KRRWIKGLDGRKVHVR--SPHAALNTLLQSAGALICKLWIIKTEEMLIEKGLKHGWDGDF 646 Query: 53350 RMIMQVHDELVLEVPEGELS-LVREKLPEMMCGVAK---LKVPLVAEVGAGANWEEAH 53189 + +HDE+ + E++ +V E E M V + + L E G NW H Sbjct: 647 AQMGWIHDEVQIACRTEEVAKVVVEVAQEAMRWVGEHWNFRCRLDTEGKIGPNWAVCH 704 >ref|NP_570330.1|DNA polymerase Length = 587 Score = 63.9 bits (154), Expect = 7e-09 Identities = 91/346 (26%), Positives = 136/346 (39%), Gaps = 17/346 (4%) Frame = -3 Query: 54175 KKTPSGAPSTDEEVLQKL--AEDYPLPKLL--LEHRG-LSKLKSTYTDKLPRMVNPTTGR 54011 ++T G P D+E+L+++ E ++L +H G LS+ K+ + KL R GR Sbjct: 277 ERTAGGQPKIDDEILREINTKESLAFARILELQKHLGQLSEGKNAWL-KLERK-----GR 330 Query: 54010 VHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIM 53831 +H + TGR A PNL +P R F S H V +D S +ELR + Sbjct: 331 LHHSCVLNTN-TGRQAHMRPNLAQVP----SAHEYRSLFKPSDNHLQVGSDASGLELRCL 385 Query: 53830 AHISG--DASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFG 53657 H D DIH A A E++G R+ K + + LIYG G Sbjct: 386 GHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT--------DRKSGKGVTYCLIYG----G 432 Query: 53656 LASNLGITRDAAKLYIDRYFARYPGVAQY----MEDTRATAKEK---GYVETVFGRRLWL 53498 LG+T A+K R G D A +E+ G ++ + GR + Sbjct: 433 GNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNAAIQERAKSGVLKGLDGRPI-- 490 Query: 53497 PEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDQLASRMIMQVHDELV 53318 R Q AA+N +Q A + KL +I L + + VHDE Sbjct: 491 ---------RLQGKNHAALNYLLQSAGAIICKLWVIRTHELLQEAGIDYYPLAFVHDEQQ 541 Query: 53317 LEVPEGELSLVREKLPEMMCGV---AKLKVPLVAEVGAGANWEEAH 53189 L V + + + M V K + L +E G +W + H Sbjct: 542 LSVRADQAEMAAQLTTLAMKDVEHQVKFRCALDSEYQIGNSWADCH 587 >ref|NP_775225.1|DNA polymerase1 Length = 545 Score = 62.4 bits (150), Expect = 2e-08 Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 4/231 (1%) Frame = -3 Query: 53869 VSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN 53690 V D + +ELR++A GD R G D+H TA ++ P R AK Sbjct: 331 VGYDGAGLELRMLASYIGDPDYTREVVDG-DVH--TANQIAAGLPT------RDDAKTFI 381 Query: 53689 FGLIYGMSAFGLASNLGITR-DAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFG 53513 + IYG + +G TR D A+L +++ P +A+ +E + A E+GY+ + G Sbjct: 382 YAFIYGAGDAKIGQIIGGTRADGARLR-EQFLKANPELAKLIERVKQEA-ERGYLVGLDG 439 Query: 53512 RRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDQLASRMIMQV 53333 R+L + G + A+N +Q A ++K +M+ +D + R L + ++ + Sbjct: 440 RKLTMRRSESG-----EVMVHKALNTLLQAAGAIVMKWAMVILDEKVRRAGLKAWKVLDI 494 Query: 53332 HDELVLEVPEGELSLVR---EKLPEMMCGVAKLKVPLVAEVGAGANWEEAH 53189 HDE E +L+ +R E + + PL ++ AG +W + H Sbjct: 495 HDEGQWECHPEDLATLRGFMETCVKEAGEILGCNCPLASDSIAGRSWYDTH 545 >ref|YP_164695.1|transposase Length = 387 Score = 62.0 bits (149), Expect = 2e-08 Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 1/110 (0%) Frame = +2 Query: 139022 DLVRRFDYIAVGNVSAAKLARTR-MAKSVYDASWSSFRHKLRYKAIAHGATFEEVDEXXX 139198 +LV ++D IA+ ++ L + +AKS+ + SW FR L YK +G V Sbjct: 276 ELVEKYDVIAMEDLRTKNLLKNHHLAKSISNQSWREFRTILEYKCKWYGKQLIVVKPNYT 335 Query: 139199 XXXXXXXXXXXXXXRPKGIAGLRIREWACSDCGVEHDRDINAALNILRCG 139348 G L IREW C CG HDRD+NAA+NIL G Sbjct: 336 SQICSSCGYH------SGKKPLEIREWTCYKCGTHHDRDVNAAVNILNKG 379 >ref|NP_612844.1|Gp15 protein Length = 983 Score = 60.1 bits (144), Expect = 9e-08 Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 3/89 (3%) Frame = -1 Query: 1773 VRAAANGRVVYAGSGVKAYGPLVILKHDNGLITAYGHNGKLLVNEGDAVRQGQPVAEMGT 1594 VR + +G V+ +YG + + H GLIT Y HN +LLVNEGD V++GQ +A+ G Sbjct: 891 VRVSKDGVVIKRRELTTSYGKYLFVDHGGGLITIYAHNSELLVNEGDRVKRGQIIAKTGN 950 Query: 1593 DASGRST---FEFEVRQNGKVVDPMNFLP 1516 +G ST +E+R NG P N P Sbjct: 951 --TGNSTGPHLHWELRVNG---IPQNVAP 974 >ref|NP_877458.1|putative DNA directed DNA polymerase Length = 807 Score = 59.7 bits (143), Expect = 1e-07 Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 40/251 (15%) Frame = -3 Query: 54160 GAP--STDEEVLQKLAED-YPLPKLLLE----HRGLSKLKSTYTDKLPRMVNPTTGR--- 54011 G+P ST + L+ L + + KLL+ H+ S T+T + T G Sbjct: 394 GSPVFSTSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGTIKDTKGMLQY 453 Query: 54010 ------VHTNYAQAVAVTGRLASNDPNLQNIPVRTAE----GRRIREAFIASPGH--RIV 53867 +H + T RL+S+ PNLQ +P + + G R++E F++ G I Sbjct: 454 VDDDGIIHHSLNTTATATTRLSSSRPNLQQLPSKDEDDPEAGSRVKEMFVSRFGADGMIG 513 Query: 53866 SADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAA------EVFGVTPL-EVNSD--- 53717 DY+ +E+ ++A +S D +LL G D+H A F L + D Sbjct: 514 ETDYTALEVVMLAALSKDRNLLAKLMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNH 573 Query: 53716 --------QRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMED 53561 R+ K F YG SA G+A N G T + A+ ++D A +P + + Sbjct: 574 PWHGRMMQARKNIKPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIAFRQI 633 Query: 53560 TRATAKEKGYV 53528 R +A+ V Sbjct: 634 VRDSAEATSLV 644 >ref|NP_051006.1|P45 Length = 993 Score = 59.7 bits (143), Expect = 1e-07 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 5/84 (5%) Frame = -3 Query: 53908 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ-----GEDIHRATAAEVFG 53744 +R IA PG ++V +D S IE R++A ++G+ + AFS+ G+D+++ A F Sbjct: 371 LRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFN 430 Query: 53743 VTPLEVNSDQRRIAKVINFGLIYG 53672 + P +V +QR+I KV+ GL YG Sbjct: 431 LLPEDVTKEQRQIGKVMELGLGYG 454 >ref|NP_958711.1|Bbp42 Length = 688 Score = 56.2 bits (134), Expect = 1e-06 Identities = 61/216 (28%), Positives = 91/216 (42%), Gaps = 39/216 (18%) Frame = -3 Query: 54154 PSTDEEVLQKLAEDYPLPKLLLEHRGLS-KLKSTYTDKLPRMVNPTT--GRVH-TNYAQA 53987 P + L++ D LP L E G+ + +T T K + + GR+ T Sbjct: 257 PDMQQSTLERRIADPDLPAELRELLGIRLQASTTSTSKYKTLAKGVSSDGRLRGTLQFNG 316 Query: 53986 VAVTGRLASNDPNLQNIP---------------------------VRTAEGRRIREAFIA 53888 + TGR A QN+P V IR +A Sbjct: 317 ASRTGRWAGRLFQPQNLPRPVLKQDAIERGIAALKADCADLLFANVMELTSSAIRGCIVA 376 Query: 53887 SPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ-----GEDIHRATAAEVFGVTPLEVN 53723 G ++V AD S IE R++A ++G+ L AF + G D+++ A+ F V+P V+ Sbjct: 377 PEGKKLVVADLSNIEGRMIAWLAGEDWKLAAFREFDDGAGPDLYKLAYAKAFAVSPDSVD 436 Query: 53722 SDQRRIAKVINFGLIY--GMSAFGL-ASNLGITRDA 53624 DQR+I KV+ L Y G+ AF A+ GI DA Sbjct: 437 KDQRQIGKVMELMLGYEGGVGAFLTGAATYGIDLDA 472 >ref|NP_996604.1|DNA polymerase Length = 688 Score = 56.2 bits (134), Expect = 1e-06 Identities = 61/216 (28%), Positives = 91/216 (42%), Gaps = 39/216 (18%) Frame = -3 Query: 54154 PSTDEEVLQKLAEDYPLPKLLLEHRGLS-KLKSTYTDKLPRMVNPTT--GRVH-TNYAQA 53987 P + L++ D LP L E G+ + +T T K + + GR+ T Sbjct: 257 PDMQQSTLERRIADPDLPAELRELLGIRLQASTTSTSKYKTLAKGVSSDGRLRGTLQFNG 316 Query: 53986 VAVTGRLASNDPNLQNIP---------------------------VRTAEGRRIREAFIA 53888 + TGR A QN+P V IR +A Sbjct: 317 ASRTGRWAGRLFQPQNLPRPVLKQDAIERGIAALKADCADLLFANVMELTSSAIRGCIVA 376 Query: 53887 SPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ-----GEDIHRATAAEVFGVTPLEVN 53723 G ++V AD S IE R++A ++G+ L AF + G D+++ A+ F V+P V+ Sbjct: 377 PEGKKLVVADLSNIEGRMIAWLAGEDWKLAAFREFDDGAGPDLYKLAYAKAFAVSPDSVD 436 Query: 53722 SDQRRIAKVINFGLIY--GMSAFGL-ASNLGITRDA 53624 DQR+I KV+ L Y G+ AF A+ GI DA Sbjct: 437 KDQRQIGKVMELMLGYEGGVGAFLTGAATYGIDLDA 472 >ref|NP_996652.1|DNA polymerase Length = 688 Score = 56.2 bits (134), Expect = 1e-06 Identities = 61/216 (28%), Positives = 91/216 (42%), Gaps = 39/216 (18%) Frame = -3 Query: 54154 PSTDEEVLQKLAEDYPLPKLLLEHRGLS-KLKSTYTDKLPRMVNPTT--GRVH-TNYAQA 53987 P + L++ D LP L E G+ + +T T K + + GR+ T Sbjct: 257 PDMQQSTLERRIADPDLPAELRELLGIRLQASTTSTSKYKTLAKGVSSDGRLRGTLQFNG 316 Query: 53986 VAVTGRLASNDPNLQNIP---------------------------VRTAEGRRIREAFIA 53888 + TGR A QN+P V IR +A Sbjct: 317 ASRTGRWAGRLFQPQNLPRPVLKQDAIERGIAALKADCADLLFANVMELTSSAIRGCIVA 376 Query: 53887 SPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ-----GEDIHRATAAEVFGVTPLEVN 53723 G ++V AD S IE R++A ++G+ L AF + G D+++ A+ F V+P V+ Sbjct: 377 PEGKKLVVADLSNIEGRMIAWLAGEDWKLAAFREFDDGAGPDLYKLAYAKAFAVSPDSVD 436 Query: 53722 SDQRRIAKVINFGLIY--GMSAFGL-ASNLGITRDA 53624 DQR+I KV+ L Y G+ AF A+ GI DA Sbjct: 437 KDQRQIGKVMELMLGYEGGVGAFLTGAATYGIDLDA 472 >ref|NP_899291.1|Sir2 Length = 246 Score = 52.8 bits (125), Expect = 2e-05 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 3/112 (2%) Frame = -2 Query: 6593 RLLVLTGAGISTDSGIPGYRDRNGQWMRSPPIQ---LQEFLGSDAARRRYWARSMIGWPV 6423 R+ + +GAG+ +SGI +RD NG W +Q + FL + +++ + + Sbjct: 2 RIFIFSGAGLDAESGISTFRDANGLWENHDIMQVCNINTFLNNYELTHKFYNQRRV---Q 58 Query: 6422 VGRARPNGSHVALARLGDAGRIERLVTQNVDGLHQRAGSDDVIELHGGINGV 6267 + PN +H +A L + ++ T NV L +RAG DV +HG + + Sbjct: 59 LADVHPNAAHYKIAELCEKYDVDN-YTANVSDLLERAGCKDVKHIHGELTKI 109 >ref|NP_795675.1|putative DNA polymerase A domain Length = 640 Score = 52.0 bits (123), Expect = 3e-05 Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 4/125 (3%) Frame = -3 Query: 53908 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 53729 +R A +A G +D+S IE R++A +G+ L FS I+ A+A+++FG+ E Sbjct: 369 VRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGKIYEASASQMFGIPIEE 428 Query: 53728 VNSDQRRIAKVINFGLIYGMSAFGL----ASNLGITRDAAKLYIDRYFARYPGVAQYMED 53561 ++ + R+ K+ L Y L A N+G+ + + +D + + Q+ +D Sbjct: 429 IDKELRQKGKISELALGYQGGPGALKQMGALNMGVKEEELQGLVDDWRRANKKIVQFWKD 488 Query: 53560 TRATA 53546 + A Sbjct: 489 VQRAA 493 >ref|NP_570332.1|exonuclease Length = 243 Score = 50.8 bits (120), Expect = 6e-05 Identities = 54/202 (26%), Positives = 85/202 (42%), Gaps = 9/202 (4%) Frame = -3 Query: 55903 LLVDGSSYLYRAYHAMPDLRGPGGEPT---GALYGIINMLRRMRKEVSAEYSA---CVFD 55742 LL+D +LYRA + D E T G + R+ K+ + ++ + Sbjct: 6 LLIDADYFLYRACNTAEDELEFDFETTLVVGDFRKGQQIFRQSIKDFTTKFDTDKVLLTF 65 Query: 55741 AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 55562 + FR D+ YK NR P +++ + A++ WP +M G+EADDV+G LA Sbjct: 66 TDSRNFRKDVEPTYKGNRVKRKPCGYKKLK--NWAMKE--WPSVMKPGLEADDVMGILAT 121 Query: 55561 EAERHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYL--- 55391 N ++ + DKD+AQ+ L + T PE+ + L Sbjct: 122 NGSLD--NFVLISPDKDMAQIPCRIYDLKHEYTQ--------------TPEKAHELLYLQ 165 Query: 55390 ALIGDTVDNVPGVEKCGPKTAV 55325 L GD+ D G GPK A+ Sbjct: 166 CLTGDSTDGYSGCPGIGPKRAL 187 >ref|YP_006863.1|putative serine Length = 287 Score = 50.4 bits (119), Expect = 7e-05 Identities = 64/261 (24%), Positives = 101/261 (38%), Gaps = 51/261 (19%) Frame = +1 Query: 79828 FVVGDLHGCVDVLRALLHDVRFDPARDRLFSVGDLVDRGPAS-ETALDLLDRPWCHVVRG 80004 F VGD+HGC D+L L ++ +D + VGDL+DRG + + L P VRG Sbjct: 20 FFVGDIHGCNDLLEDALQLAGYNGKKDCVVCVGDLIDRGTQNLQVLAKFLYNPRFCSVRG 79 Query: 80005 NHEEVLSLVARGKLPPDAWRGIGGDWGA-DLPPERLHAHAA-RVDALPLVRVIGDGPARF 80178 NH++ + + W GG W +L + + A + LP+ + ++ Sbjct: 80 NHDQFMIVGDWAN-----WMYNGGIWAMNELDADTIKNIAEDMAEKLPVFLTVKHRGKKY 134 Query: 80179 NVLHA------EFFGSDAEL---------------DTGSYPHDVRERLIWGRDLIQ---- 80283 V+H + G++ E D +P E +W RD+IQ Sbjct: 135 GVVHGGVPFTYKECGNEVETPVWDNLIAQVEAAKEDPHDHPGYHVEPYLWDRDVIQEIGL 194 Query: 80284 -----GLADPARQA----------------GLSLTCTGHTPVREPQRIGAQWFIDTGAFA 80400 G P Q G+ GHT V P + ++DTG Sbjct: 195 HLSKNGEEHPYFQRYSEFKEKYMVEVPPVNGVDFVFHGHTGVPYPILYQNRVYLDTGGVF 254 Query: 80401 PAGRLTLAE--PRTGRTWSMT 80457 G+LT+A+ TG+ + T Sbjct: 255 -NGQLTVAQVNDETGKITTFT 274 >ref|NP_039722.1|predicted 14.5Kd protein Length = 130 Score = 48.9 bits (115), Expect = 2e-04 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Frame = -2 Query: 40133 LCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQ--SVGLT 39960 LCPFH +++PS VS Q Y+C CG G I + +TF EA + +A+ SVG Sbjct: 30 LCPFHGDETPSAAVSYDLQGYNCMACGVRGDVISIIRHEEEVTFAEA-KRIAENLSVGGN 88 Query: 39959 VP 39954 VP Sbjct: 89 VP 90 >ref|YP_006958.1|flap endonuclease Length = 291 Score = 48.9 bits (115), Expect = 2e-04 Identities = 53/233 (22%), Positives = 97/233 (41%), Gaps = 12/233 (5%) Frame = -3 Query: 55945 FIMPEERNLEGK-TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVS 55769 FI EE + + L++VDG++ +R H +P + Y ++ ++ + K S Sbjct: 8 FIEEEEAEMASRRNLMIVDGTNLGFRFKH------NNSKKPFASSY--VSTIQSLAKSYS 59 Query: 55768 AEYSACVFDAKGKTFRDDLYADYKANRPSM-----PPDLALQVEPIHGAVRALG-----W 55619 A + + D FR + +YK NR + AL + A + Sbjct: 60 ARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTF 119 Query: 55618 PLLMVEGVEADDVIGTLAREAERHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDG 55439 P + GVEADD+ + + +V + + D D L+T++V+ + T Sbjct: 120 PTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFTTRREYHLRD 179 Query: 55438 VIAKFGVPP-ERIIDYLALIGDTVDNVPGVEKCGPKTAVKWLTQYDTLDGVIE 55283 + V E+ I A++GD DN+ GVE G K + ++ + +I+ Sbjct: 180 MYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIID 232 >ref|NP_817647.1|gp58 Length = 135 Score = 47.8 bits (112), Expect = 5e-04 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%) Frame = -2 Query: 40130 CPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAIGFLMEHAGLTFPEA---VQELAQSVGLT 39960 CPFH +++PS ++S + CF C G+A+ + E +++ EA +EL+ T Sbjct: 33 CPFHGDETPSASISFKHNAFRCFACPVKGSAVAIIKEQEEVSYAEAKRIAEELSPGGDGT 92 Query: 39959 VPHEPS 39942 +P +PS Sbjct: 93 IPAQPS 98 >ref|NP_112710.1|ORF47 Length = 918 Score = 47.8 bits (112), Expect = 5e-04 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Frame = -1 Query: 1785 PDHSVRAAANGRVVYAGSGVKA-YGPLVILKHDNGLITAYGHNGKLLVNEGDAVRQGQPV 1609 P + A+ +G+VV AGS YG ++KH +GL T Y H ++ V+ G V++GQ + Sbjct: 820 PTTPILASGDGQVVQAGSNYYDWYGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQI 879 Query: 1608 AEMG 1597 MG Sbjct: 880 GLMG 883 >ref|NP_076626.1|endopeptidase Length = 894 Score = 47.8 bits (112), Expect = 5e-04 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Frame = -1 Query: 1785 PDHSVRAAANGRVVYAGSGVKA-YGPLVILKHDNGLITAYGHNGKLLVNEGDAVRQGQPV 1609 P + A+ +G+VV AGS YG ++KH +GL T Y H ++ V+ G V++GQ + Sbjct: 796 PTTPILASGDGQVVQAGSNYYDWYGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQI 855 Query: 1608 AEMG 1597 MG Sbjct: 856 GLMG 859 >ref|NP_108727.1|minor structural protein 3 Length = 906 Score = 47.4 bits (111), Expect = 6e-04 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Frame = -1 Query: 1785 PDHSVRAAANGRVVYAGSGV-KAYGPLVILKHDNGLITAYGHNGKLLVNEGDAVRQGQPV 1609 P + A+ +G+VV AGS YG ++KH +GL T Y H ++ V+ G V++GQ + Sbjct: 808 PTTPILASNDGQVVQAGSNYYNWYGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQI 867 Query: 1608 AEMG 1597 MG Sbjct: 868 GLMG 871 >ref|NP_046874.1|putative DNA primase Length = 129 Score = 47.0 bits (110), Expect = 8e-04 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Frame = -2 Query: 40133 LCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQ--SVGLT 39960 LCPFH +++PS VS Q ++C CG G I + ++F EAV+ +A+ SVG Sbjct: 30 LCPFHGDETPSAAVSYDLQGFNCLACGVRGDVISIIRHEEEVSFAEAVR-IAEGLSVGGN 88 Query: 39959 VP 39954 +P Sbjct: 89 IP 90 >ref|NP_663686.1|structural protein Length = 908 Score = 47.0 bits (110), Expect = 8e-04 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Frame = -1 Query: 1785 PDHSVRAAANGRVVYAGSGVKA-YGPLVILKHDNGLITAYGHNGKLLVNEGDAVRQGQPV 1609 P + A+ +G+VV AGS YG ++KH +GL T Y H ++ V+ G V++GQ + Sbjct: 810 PTTPILASNDGQVVQAGSNYYDWYGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQI 869 Query: 1608 AEMG 1597 MG Sbjct: 870 GLMG 873 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 46.2 bits (108), Expect = 0.001 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 4/90 (4%) Frame = -1 Query: 1776 SVRAAANGRVVYAGSGVKAYGPLVILKHDNGLITAYGHN-GKLLVNEGDAVRQGQPVAEM 1600 ++++ +G+V AG K G V++K D+G + Y H V G +V+ GQ + ++ Sbjct: 1592 AIKSLQSGKVQIAGYS-KTAGNWVVIKQDDGTVAKYMHMLNTPSVKAGQSVKAGQTIGKV 1650 Query: 1599 GTDASGRST---FEFEVRQNGKVVDPMNFL 1519 G+ +G ST ++ QNGK +DP ++ Sbjct: 1651 GS--TGNSTGNHLHLQIEQNGKTIDPEKYM 1678 >ref|NP_813764.1|putative DNA polymerase Length = 709 Score = 45.1 bits (105), Expect = 0.003 Identities = 81/369 (21%), Positives = 136/369 (36%), Gaps = 42/369 (11%) Frame = -3 Query: 54169 TPSGAPSTDEEVLQKLAEDYPLPKLLLE--HRGLSKLKSTYTDKLPRMVNPTTGRVHTNY 53996 T +GAP D+EVL+ + D P + +E + + L D + G +H + Sbjct: 345 TDNGAPKVDDEVLEHVRVDDPEKQAAIELIQKRIGMLAE--GDNAWIKLVGEDGAMHGSI 402 Query: 53995 AQAVAVTGRLASNDPNLQNIPVRTAE-GRRIREAFIASPGHR--------IVSADYSQIE 53843 A TGR PN+ +P +A G R F A+ + V D S +E Sbjct: 403 NPNGAGTGRATHAYPNMGQVPSASATYGPHCRALFGATHAKKRRGWEKVVQVGTDASGLE 462 Query: 53842 LRIMAHISG--DASLLRAFSQGEDIH--RATAAEVFGVTPLEVNSDQ----RRIAKVINF 53687 LR + H D DIH AA + + ++++ R IAK + Sbjct: 463 LRCLGHYGAPFDEGRYADTVLNGDIHWVNGKAAGIIKFDERDKHNEEHERVRGIAKTFIY 522 Query: 53686 GLIYGMSAFGLASNLGITRDAAKLYIDRYFARYP---GVAQYMEDTRATAKEKGYVETVF 53516 +YG + S +G + K + P G+ + D T ++ F Sbjct: 523 AFLYGAGDELVGSFVGGGKKEGKALKKDFMENTPAISGLQGAIADQLITEQKWNQATRRF 582 Query: 53515 G---RRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVD-----------G 53378 +R WL ++G R + +A+N +Q A + K ++ V+ G Sbjct: 583 DIKWKRRWLRGLDGRKIHVR--SPHSALNFLLQSAGAIICKKWVVEVERILMEEHGLYHG 640 Query: 53377 WLTRDQLASRM--IMQVHDELVLEVPEGELSLVREKLPEMMCGVA----KLKVPLVAEVG 53216 W D + VHDEL + E++ + K+ + + + L + Sbjct: 641 WYKDDGTPGDFCYMAWVHDELQIAARTPEIAEIVAKVAQQAIREVGESFQFRCQLDTDYK 700 Query: 53215 AGANWEEAH 53189 GA W E H Sbjct: 701 IGATWRECH 709 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 44.7 bits (104), Expect = 0.004 Identities = 65/237 (27%), Positives = 92/237 (38%), Gaps = 6/237 (2%) Frame = -3 Query: 167665 PEVALHDRQRFADVPRGQRRVAEKAVHGRFQQQPEREPDARIAADFD-----RVEHQPPP 167501 PE A R R + RG + +A R + P P AR+ + R +P P Sbjct: 110 PEYAPALRPRAPECDRGAHHLRTRAPRTRTRAVP-LGPGARVRTPVEDRRRTRRRRRPDP 168 Query: 167500 LRRRDARVRFGQHRVAQARAGPHGGQVDAACGQRLQQQACIGDRNGRAAQPEAILARRGS 167321 RR R+ G HR AR G+R++ +A G G A +P RR Sbjct: 169 RRRVQPRLGVGVHRRRGAR----------RVGRRVRVRARPGP--GAARRP-----RRRP 211 Query: 167320 HVDLAENDKHYGCLPPHVQGGARLRWQASLIGRIIMTTPFPHLLAPLDLGFTTLKNRVLM 167141 H +H + P + G R R +ASL R P + PL L L +L Sbjct: 212 H------PEHPRAVRPRRRTGRRHRRRASLRPRHRRHRSTPPMNTPLTLAGLALTAVILW 265 Query: 167140 GSMHTGLEDSRKTLPRLAEYFAERARGGV-GLIVTGGFAPNVAGWTKPFGGTLMTSA 166973 ++ SR P++ F + A GV G + TGG +AG G T + A Sbjct: 266 ANLRPWWTGSRD--PKMLAAFGKGAALGVLGAMCTGGLLGALAGCAPSVGNTAGSKA 320 >ref|NP_958209.1|gene 33 protein Length = 322 Score = 43.9 bits (102), Expect = 0.007 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 18/143 (12%) Frame = -1 Query: 175968 RRVQVAAEAEADQPEHEQRTHADV---ARGERIRTQRDQLERADRQQRDTDL--QRAERT 175804 +R + +AE ++ EHE+R + AR E + ++E A R++ + +RAER Sbjct: 150 QREEARLKAEQEKREHEERLKREAEEKARAEAEAKAKAEIEAAARREAEAKAAAERAERE 209 Query: 175803 HLREKQRRQEHGHEDAD-AGHERQQAADPEVAHGQ----------RAQVDDRVFRGQRMH 175657 + +QR Q E A+ A E+Q A + E Q A+ R+ +R+ Sbjct: 210 RIEAEQRAQREAKEAAERAEREKQAAIEAERRKAQEEAERIRREAEAKEQARIAEEKRIK 269 Query: 175656 DEQE--AADAGDPRADHDRIVAE 175594 DE+E A D + +++I+A+ Sbjct: 270 DEEERRAKDKAHRKEVNNKILAD 292 >ref|NP_777327.1|hypothetical protein Length = 196 Score = 43.1 bits (100), Expect = 0.012 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Frame = -1 Query: 1773 VRAAANGRVVYAGSGVKAYGPLVILKHDN-GLITAYGHNGKLLVNEGDAVRQGQPVAEMG 1597 V A +GRVV AG +G +V+L H + G+ T YGH +LV+ GD V GQ + +G Sbjct: 69 VHAMTDGRVVIAGR-FPVWGGMVVLWHPSAGVWTRYGHLRDILVHPGDVVVAGQQIGTIG 127 Query: 1596 TDASG 1582 +G Sbjct: 128 KMTTG 132 >ref|YP_195220.1|RNase H Length = 287 Score = 42.7 bits (99), Expect = 0.016 Identities = 48/178 (26%), Positives = 72/178 (40%), Gaps = 11/178 (6%) Frame = -3 Query: 55858 MPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTF-RDDLYADYKANRPS 55682 M L+G + ++N LR ++ +Y V K + R D++ YK NR Sbjct: 15 MAQLKGDQLNENLVRHMVLNSLRSYERQYGEKYGEMVLAYDSKQYWRKDIFPYYKQNRKK 74 Query: 55681 MPP-------DLALQVEPIHGAVRALGWPLLMVE--GVEADDVIGTLAREAERHGMNVIV 55529 + + I +R L +P +VE G EADDVI TL + + +++ Sbjct: 75 DRERSGHNWSSIFEVLNKIRDEIRDL-FPYKVVEVLGAEADDVISTLCKNKGPKEL-ILI 132 Query: 55528 STGDKDLAQL-VTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDTVDNVP 55358 +GDKD QL V N +T + L D P I L GD D +P Sbjct: 133 LSGDKDFIQLHKYPGVYQYNPITKKQLGYDN--------PHAFIKEHILKGDKSDGIP 182 >ref|NP_891817.1|RnaseH ribonuclease Length = 315 Score = 42.0 bits (97), Expect = 0.027 Identities = 55/228 (24%), Positives = 89/228 (39%), Gaps = 23/228 (10%) Frame = -3 Query: 55807 IINMLRRMRKEVSAEYSACV--FDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAV 55634 I++ +R + +Y V FD+ +R D+ YK NR E I A+ Sbjct: 60 ILDTMRYNMTKFKEQYPITVLAFDSSKGYWRRDIAPYYKRNRKEKRDADPRDWEMIFAAI 119 Query: 55633 RALG--------WPLLMVEGVEADDVIGTLAREAERHGMNVIVSTGDKDLAQLVTERVTL 55478 + + ++ V+ VEADD+I L ++ G V++++GD D QL + Sbjct: 120 NKITEEFKENMPYHVIKVDKVEADDIIAVLTKKFSVEGRQVLINSGDGDYTQLHKYK--- 176 Query: 55477 VNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDTVDNVPGVEKC-------------GP 55337 N + + K+G P + ++ + GD D V V KC Sbjct: 177 -NVKQWAPVQKAWKKCKYGSPYKDLM-VKCVKGDAKDGVASV-KCRSDFIISRLEGERAK 233 Query: 55336 KTAVKWLTQYDTLDGVIEHAADIKGVVGDNLRRALDFLPLGRQLVTVD 55193 A KWL Q I A D K ++ + R D R+L+ D Sbjct: 234 PVATKWLEQ-------IFDAEDPKSLMTEEEARRFD---ENRELIDFD 271 >ref|NP_536385.1|conserved hypothetical protein Length = 186 Score = 42.0 bits (97), Expect = 0.027 Identities = 25/75 (33%), Positives = 33/75 (44%) Frame = -2 Query: 180431 MSRRFIRQGDKTDRNGVVVDGIAGTSLQGQPFAYLGAPVQCPACGTTGVIISDGSPRAMT 180252 M FI +GD T G VV ++ G+ A LG V CP CG I+S MT Sbjct: 1 MGFAFICEGDTTTHGGRVVGCNVANTVHGRAIALLGDMVTCPRCGGIYPIVSVKRELNMT 60 Query: 180251 MMGKQVALENDLCQC 180207 + +A + D C Sbjct: 61 FGDRPIATDGDKTAC 75 >ref|NP_945059.1|gp28 Length = 186 Score = 42.0 bits (97), Expect = 0.027 Identities = 25/75 (33%), Positives = 33/75 (44%) Frame = -2 Query: 180431 MSRRFIRQGDKTDRNGVVVDGIAGTSLQGQPFAYLGAPVQCPACGTTGVIISDGSPRAMT 180252 M FI +GD T G VV ++ G+ A LG V CP CG I+S MT Sbjct: 1 MGFAFICEGDTTTHGGRVVGCNVANTVHGRAIALLGDMVTCPRCGGIYPIVSVKRELNMT 60 Query: 180251 MMGKQVALENDLCQC 180207 + +A + D C Sbjct: 61 FGDRPIATDGDKTAC 75 >ref|NP_932573.1|RNaseH ribonuclease Length = 307 Score = 42.0 bits (97), Expect = 0.027 Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 12/167 (7%) Frame = -3 Query: 55807 IINMLRRMRKEVSAEYSACVF---DAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGA 55637 I + +R K+ AEY + D+K +R DL YK NR + + + G Sbjct: 49 IFDTMRNNVKKFKAEYPETIIAFDDSKDGYWRRDLAWYYKKNRSISKEESKWDWDALFGF 108 Query: 55636 VRAL---------GWPLLMVEGVEADDVIGTLAREAERHGMNVIVSTGDKDLAQLVTERV 55484 + + G ++ + EADD+I L + G V++S+ D D QL + Sbjct: 109 INKIVDEMLTVYPGVKMIKIGKTEADDIIAILTKLFTDQGRCVMISSSDSDFTQLHKFK- 167 Query: 55483 TLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDTVDNVPGVEKC 55343 + V K G P + Y + GD D V G+ KC Sbjct: 168 ---GVKQYSPAQKKSVKPKNGSPKHDLF-YKIIKGDGKDGVAGI-KC 209 >ref|NP_795697.1|putative tail protein Length = 1460 Score = 41.6 bits (96), Expect = 0.035 Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 1/231 (0%) Frame = +2 Query: 28007 VPNAIGNV-VGSVLGLQNVELVHTGAGSKPQGNTSNLTIPAGASAVPHNPTEFSSIYGGD 28183 +PNA+ V G G ++ TG S TS + A A+ + N G Sbjct: 1009 IPNALSGVWEGIKSGFSSMWDQITGKSS-----TSTAKVSADATVMAMN-------VGMQ 1056 Query: 28184 GTPTASQTTVGIISEGDLSQTVSDLNTFAANNGLGTISSSIVKTGPAGSSYTDTDGTVEW 28363 T A+Q + T S LN+ + N L I+++ T A + T GT+ Sbjct: 1057 TTAIANQAN---------TDTTSMLNSISQNTELANINATSNATQMANNVNAQT-GTMSL 1106 Query: 28364 NLDSQSIVGAAGGSVKQVVFYVAPSMTLTAITAAYNKAVTDNVAKVINVSLGVCESSANS 28543 + S+ A+G S V + + + + N A + IN +L + + Sbjct: 1107 RGLNDSMSLASGISANMSVANINATTQAREMASGVNGATSSMNLDAINHTLSLASGVGAN 1166 Query: 28544 TGSQATDDTIFKQAVAQGQTFSVSAGDHGAYECASGTPSRSTYTVSEPATS 28696 G+ +T T QA++ G + S+++ + + ASG + T +S ATS Sbjct: 1167 MGAASTGATSQAQAMSSGVSNSLASMQSNSTKAASGLSNSVTSEMSSAATS 1217 >ref|NP_835599.1|similar to DNA polymerase I Length = 318 Score = 41.6 bits (96), Expect = 0.035 Identities = 28/79 (35%), Positives = 37/79 (46%) Frame = -3 Query: 55594 EADDVIGTLAREAERHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVP 55415 EADDVI LARE R ++V + + DKD QL E N D ++G Sbjct: 162 EADDVIAHLAREIARSNIDVNIVSTDKDYYQLWDEEDIRERVYINSLSCSDVKTPRYG-- 219 Query: 55414 PERIIDYLALIGDTVDNVP 55358 + AL+GD DN+P Sbjct: 220 ---FLTIKALLGDKSDNIP 235 >ref|NP_047955.2|gp9a Length = 805 Score = 40.4 bits (93), Expect = 0.077 Identities = 69/288 (23%), Positives = 109/288 (37%), Gaps = 2/288 (0%) Frame = -2 Query: 40199 VDIVDVVGRYVQL-KKGGANFMGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAIGFLM 40023 +D ++GR+ + ++ ++ LCP H++ PS + C A G G ++ Sbjct: 1 MDFASILGRFKAVSEEPDGGYLALCPAHSDSRPSLRIWRGDDLKVRLTCRA-GCDTGDVV 59 Query: 40022 EHAGLTFPEAVQELAQSVGLTVPHEPSMRXXXXXXXXXGDYPAPVSKSVATALSDAMTAA 39843 GL + + A GLTVP E P VS + T L Sbjct: 60 SSVGLKWSDLFN--ASGEGLTVPKEK---------------PKMVSGAPVTRLR------ 96 Query: 39842 CDYYRKQLRGATVAIQYLKNR-GLTGEIAARFGLGYAPDGWQNLEAAFPDYRDESLVEAG 39666 + + L A Y +R GL A GL Y+PDG Q + +PD+ Sbjct: 97 --MWLESLPLTQDAADYAADRFGLDVAQAEALGLRYSPDG-QGYD--WPDF--------- 142 Query: 39665 LVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSGEPKYLNSPETPLFN 39486 V+ + RF R++ P++ G G GR L P S + P Sbjct: 143 ------------VSTSFARF-PRMVVPLKGFDGVTRGAQGRDLSGKCPGRWLSLKNPDGQ 189 Query: 39485 KGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTA 39342 + + YG+F VL+ EG D + +G+ +AVA G + Sbjct: 190 RWAP-YGVFRGDAGY---GVVLITEGPGDALTAVSVGY-DAVAVRGAS 232 >ref|NP_899249.1|RNaseH ribonuclease Length = 310 Score = 40.4 bits (93), Expect = 0.077 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Frame = -3 Query: 55753 CVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAV--------RALGWPLLMVEG 55598 C+ + KG +R YK R + E I A+ + + + ++ +EG Sbjct: 74 CIDNGKGGYWRKKEAWYYKFKRSEQRDESGWDFETIFDAMAQIKDEIKQNMPYYVMDIEG 133 Query: 55597 VEADDVIGTLAREAERHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGV 55418 VEADD IG L + V++++ D D QL T + LV+ + + + V K G Sbjct: 134 VEADDHIGVLTNYYVSKNVPVLITSSDGDFTQLHTSK--LVSQWS--PIQKKWVKPKHG- 188 Query: 55417 PPERIIDYLALIGDTVDNV 55361 PE I Y + GD D + Sbjct: 189 SPEMDIMYKCIKGDKKDGI 207 >ref|YP_006930.1|putative Sir2-like protein Length = 272 Score = 40.0 bits (92), Expect = 0.10 Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 12/193 (6%) Frame = -2 Query: 6593 RLLVLTGAGISTDSGIPGYR-DRNGQWMRSPPIQLQEFLGSDAARRRYWARSMIGW---- 6429 RL++++GAG+S +SG+ +R D L+E A R ++ ++ + + Sbjct: 3 RLIIISGAGLSVESGVRAFRTDTASGKALWDDYDLEEVCNIHAFRGNFYHKTHMFYNKRR 62 Query: 6428 PVVGRARPNGSHVALARLGD-----AGRIERLVTQNVDGLHQRAG--SDDVIELHGGING 6270 + PN +H+ R+G+ G++ L T NVD L +RAG D++ +HG + Sbjct: 63 EELKTVEPNLAHL---RIGEWYKKYPGQVVNLTT-NVDDLIERAGVPHSDILHIHGYLKE 118 Query: 6269 VTCLECGAHHARATIQTVLEADNPELLGAQAEPAADGDAHLEWAALDTFRVPACPACGGL 6090 V + + I + +P+ +W Sbjct: 119 VVVADSYNSSNKRVIDVGYNSIDPD--------------DYKW----------------- 147 Query: 6089 LKPAVVFFGENVP 6051 +KP V+FFGE+ P Sbjct: 148 VKPNVIFFGEHAP 160 >ref|NP_112716.1|LYS Length = 429 Score = 38.9 bits (89), Expect = 0.23 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = -1 Query: 2106 QSAPTSAATPGVIAGYYRVNPGDTLAGIANAYGQRVQDVASWNHMAPTDAVSPGQVLR 1933 ++ S + P A Y V GDTL+GIA+ +G Q++A N ++ + + GQV+R Sbjct: 317 ETIDASTSQPTTPAKGYIVKQGDTLSGIASNWGTNWQELARQNSLSNPNVIYTGQVIR 374 >ref|NP_075318.1|gp51 Length = 171 Score = 38.5 bits (88), Expect = 0.29 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Frame = -2 Query: 40133 LCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAIGFLMEHAGLTFPEAV---QELAQS 39972 LC H E PS VS ++C C A G AI LM + + + AV QEL+ S Sbjct: 33 LCWHHEESRPSAAVSYQLNAFNCLACSARGNAITLLMTYEEVNYQTAVERAQELSPS 89 >ref|YP_024820.1|Pas34 Length = 596 Score = 38.5 bits (88), Expect = 0.29 Identities = 51/175 (29%), Positives = 69/175 (39%), Gaps = 18/175 (10%) Frame = -1 Query: 247860 LLQLLATIRGARRILEVGTLGGYSTIWLARALPPG-GSLMT------LELN--------P 247726 L L A + + I+E+G G +++ LA G G+ +T LE N P Sbjct: 307 LADLAAQVPADQEIVELGVFQGRTSLQLAWGASQGHGAHVTGVDAWDLEGNTYGPPFTDP 366 Query: 247725 AHAKVATENIARAGFAQVVSVVVGSAKDSLARLIDAGEAPFDFIFIDADKD---NNAVYL 247555 A +A NI G+A + +V A D AR P +F+D D D Sbjct: 367 ASRVLAHTNIENLGYADKIRLVQNFASDEAARY---SGPPVGLLFVDDDHDYAGARRAVE 423 Query: 247554 DAALKLSRPGTVIVVDNVVRNGRVADPDNREPDVVGVREGFARLVAEPALATTAV 247390 D A L+ PG I VD D PD GV+ LV E LA A+ Sbjct: 424 DWAPHLA-PGATIAVD-----------DYGHPDWPGVKMAVDDLVNEGVLAPIAL 466 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 980,193,330 Number of Sequences: 14420 Number of extensions: 18667549 Number of successful extensions: 71852 Number of sequences better than 0.5: 72 Number of HSP's better than 0.5 without gapping: 11838 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 71662 length of database: 3,019,461 effective HSP length: 127 effective length of database: 1,188,121 effective search space used: 103417616203 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig276 (250,876 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 144 4e-33 ref|NP_945089.1|gp58 98 4e-19 ref|NP_046569.1|IMPB 67 7e-10 ref|NP_932589.1|hypothetical protein 67 7e-10 ref|YP_164769.1|orf134 57 6e-07 ref|NP_046572.1|ABC transporter 57 8e-07 ref|NP_818251.1|gp200 56 1e-06 ref|NP_050160.1|hypothetical protein 51 4e-05 ref|NP_818206.1|gp133 50 9e-05 ref|NP_835609.1|hypothetical protein 49 3e-04 ref|NP_835536.1|hypothetical protein 42 0.020 ref|NP_818250.1|gp199 42 0.033 ref|NP_818239.1|gp188 40 0.074 ref|NP_058483.1|orf 44 40 0.097 ref|NP_958209.1|gene 33 protein 39 0.28 ref|NP_064745.1|gp7 38 0.48 >ref|NP_945090.1|gp59 Length = 429 Score = 144 bits (363), Expect = 4e-33 Identities = 113/408 (27%), Positives = 182/408 (44%), Gaps = 14/408 (3%) Frame = -2 Query: 121635 VGTTIEWYDFYIYGTAAALVFGKVFFSSTMDPGVATLLAFVTFWAGFAARPLGGIVFGHL 121456 VG EW+DF Y + ++ K+FF ST D ++ LL+ T GF RP+GGIV G + Sbjct: 28 VGNGFEWFDFISYSFFSVII-AKLFFPST-DDNLSLLLSVSTIGVGFFMRPIGGIVIGGI 85 Query: 121455 GDRVGRKTALVITLVMMGLATTGIGLLPGYASIGVWAPAGLVALRVLQGIAVGGEWGGAV 121276 D+VGR+ AL +T+ +M T IG P Y G+ AP +V R+LQG + GGE GGA Sbjct: 86 ADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGGEMGGAT 145 Query: 121275 LIASENAPKHRSILYAAFAQQGSPTGNXXXXXXXXXXXXXXXPSFL-MWGWRIPFLLSAV 121099 E P R Y ++ Q + WGWRIPFLL Sbjct: 146 AYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWRIPFLLGLG 205 Query: 121098 LVIIGMVIRLRLEESVDMQRVLARKRTVKLPLRDVVRDHWVVVLLAAGTLPVINV-TYFR 120922 L +G+ IR RL D + P+ +VVR L+ G + V +Y Sbjct: 206 LGPVGIYIRSRLN---DPGFPADERLGECAPVVEVVRSFSREALVGFGLVVFWTVCSYVL 262 Query: 120921 STFALSWATKTLGYAQGT-FLGILSISLVVQFLMQPVG--------AWFVSKVDMRRAMC 120769 + ++A+K L T F+ +L + +V F+ +G WF++ Sbjct: 263 LFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLFGRRWFLAGA------- 315 Query: 120768 WILIPEIVLMPVMFHALATRSYWVAVAGMCISTIPSAMFYGAVGGVLARVFPANIRYTGL 120589 +L+ + P+ A + + + A + G + L+ +FP + TG+ Sbjct: 316 -LLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFPDGVLSTGI 374 Query: 120588 SLAYQLSALVVGG-GTPVLAQAILNATGSIVGV--AIASGLYALVSLA 120454 S++Y L+ + GG ++ AI ++ IA+ + +L+S++ Sbjct: 375 SISYNLAVITFGGFSAAIITWAIATTHNNLAPAFYVIAAAIVSLISVS 422 >ref|NP_945089.1|gp58 Length = 297 Score = 97.8 bits (242), Expect = 4e-19 Identities = 86/301 (28%), Positives = 131/301 (43%), Gaps = 7/301 (2%) Frame = -3 Query: 188120 LPPLQTLRAFEAAVRLQSFTRAADELALTQGAVSQHIRALEAQLGYPLFTRERNGXXXXX 187941 LPPLQ L F+AA R +FTRAA+EL + QGAVS+ + LE LG LF R+ Sbjct: 6 LPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTR 65 Query: 187940 XXXXXXLQVRQGLSVLERAFEPTLAVRRRPRTCDVTLNVSVLPSVAERWLVPRLPRFSAA 187761 +V ++L E T V + +T ++ A +L R+ FSA Sbjct: 66 AGQQYADRVH---AILADCVEATALVMKEQTPHSLT--IACASGTATLFLADRIAEFSAE 120 Query: 187760 HPHISIVLHPDVALAPLRKRDRIDVALRY-GPGTWPGVIAEKLMNETIFPVASPAYRNRD 187584 HP +S+ + + L + D+ + Y PG+ ++ E + +P + Sbjct: 121 HPEVSVRILVREGVFNLNAAE-FDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGR 179 Query: 187583 GVAPRTAADLVRATLL--RHPAQPWEPWCQAARLDLTE-SARAPRFTDTNT---LIDAAL 187422 V P+ DL+ ATLL + W W RL + E R R N+ L+ AL Sbjct: 180 RVPPQ---DLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLAL 236 Query: 187421 KGRGVALARRSLIEPELADGTLVRVSTVRITDVYAHYVVWRPGHPHEAAIHTWLDWLRSE 187242 G G L + +I P + G LV S + A+ V+W A+ + +WL + Sbjct: 237 HGHGAILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLLTH 296 Query: 187241 V 187239 V Sbjct: 297 V 297 >ref|NP_046569.1|IMPB Length = 416 Score = 67.0 bits (162), Expect = 7e-10 Identities = 71/290 (24%), Positives = 134/290 (46%), Gaps = 15/290 (5%) Frame = -1 Query: 99511 RKIIHC-DCDCFYASVEMRDDPSLRNRPL----AVGGRPDQRG--VIATCNYEARRYGVH 99353 RK I C D FYASV ++ PL AV G +++G V+A + +G+ Sbjct: 9 RKNILCVDMKSFYASVSA---VTMGLNPLTCYLAVVGNTERQGSVVLAASPALKKDFGIK 65 Query: 99352 SAMSSALAMRKCPDLLILPSAMDKYRAASRQIMAIYRDYTPD--VEPLSLDEAYLDVSGS 99179 + S + + P + I+ M + S +I ++ + P+ V S+DE++LD Sbjct: 66 TG-SRLFEIPEDPRIHIVNPQMKLFIRVSTEITKLFYRFVPEKCVHTYSIDESFLDAGKE 124 Query: 99178 ERCQGSATLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKP---DGLFVVRPHEI 99008 + + +A+ I+ + G+ + G+ N ++K+A D G+ R ++ Sbjct: 125 DPEE-----MAKAIQSSMWREFGLMCTVGIGDNMLLSKLALDLESKKTKSGIARWRYEDV 179 Query: 99007 -DAFVAALPVRKLHGVGKVTATRLDRLGIQTCAQLRDWPLIDLHREFGAFGRRLYELSRG 98831 + P+ K+ G+G L+R+GI T QL +PL L ++FG G +LY + G Sbjct: 180 PNKLWKVRPLSKMWGIGGRMERNLNRMGISTIGQLAKFPLELLEKKFGIMGNQLYYHAHG 239 Query: 98830 IDERPVQADQERKSVSVETTYV--TDLTTLEQCADEIRRLVVQLDARIDR 98687 ID + A + +S + + D T ++EI+ +++++ + R Sbjct: 240 IDLSEIGAPLMQGQISFGKSQILLRDYTR----SEEIKAVLLEICEEVAR 285 >ref|NP_932589.1|hypothetical protein Length = 507 Score = 67.0 bits (162), Expect = 7e-10 Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 2/187 (1%) Frame = -3 Query: 159521 VWIGYVFLFVPIAVYAVIGLLSRTSDLVEYYVAGRRVPSAFNGMATAADWLSAASFIGLA 159342 ++ GY+ V + VIG ++ Y++A R +P G A A +SA IG Sbjct: 8 IFAGYIGCIVMAGL--VIGW-KKSGTTKSYFMADRSLPWWILGCAILAANISAEHLIGTT 64 Query: 159341 GSLYATGYDALAYVMGWTGGFCLV--AFLLAPYVRKLARYTIPDFLGTRFSSTXXXXXXX 159168 GS YA G A+ + TG LV A+L PY K T+P FL ++ + Sbjct: 65 GSAYAMGIAIGAFEL--TGALALVVAAWLAIPYFVKNQITTMPQFLAMKYDNRVRSMFAT 122 Query: 159167 XXAILCSFVYLVAQIQGIGLIATRFIGVDFAIGIFCGLAGILVCSFLGGMRAVTWTQVAQ 158988 ++ + V L A + +G +A IG+ +G++ + ++ S +GG+ ++ WT Q Sbjct: 123 FWIVVYTLVNLTA-VSYMGALAFTSIGIPLEVGVWALIGFAVLYSAVGGLSSLVWTDFIQ 181 Query: 158987 YIILISA 158967 IL++A Sbjct: 182 VGILLTA 188 >ref|YP_164769.1|orf134 Length = 1062 Score = 57.4 bits (137), Expect = 6e-07 Identities = 51/165 (30%), Positives = 71/165 (43%), Gaps = 21/165 (12%) Frame = -3 Query: 3152 SGSSLQQTSAQPSSGGAKSFLAGMAGKAGDVVVGALNMIGVRYRWGGNSPDSGL------ 2991 SG ++ A S G S LA A G +V G Y G + S L Sbjct: 895 SGGGDDESDADDSGDG--SALANKAASIGKNLVSKRGK-GSIYDQGAHGDTSALEKSPAR 951 Query: 2990 -DCSGFVRYVFQD------------TLGMSLPRRAEEMSRVGEKVSMSN--LKPGDLVFF 2856 DCS FV Y +++ T ++ + +S G S + +K GD++FF Sbjct: 952 GDCSQFVYYCYKEAGLDISHGGSWTTWDIAKSSNLKTISSNGSNKSSAKKKMKNGDIIFF 1011 Query: 2855 NTMRRTFSHVGIYIGDNKFVHSPSTGSTVRVDDLDSGYWEKRFTG 2721 NT T SH+GIYIGD KFV S + + L + YW+ F G Sbjct: 1012 NT-EGTDSHMGIYIGDGKFVGFQSEPNMLSQASLSNSYWQGAFGG 1055 >ref|NP_046572.1|ABC transporter Length = 705 Score = 57.0 bits (136), Expect = 8e-07 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 5/162 (3%) Frame = -1 Query: 4123 VADVSVSVRQGETLGIVGESGSGKSTLAMALLGLQKTAGGEIEFQGRALSTYRGREQTAL 3944 V D+++ + + + + I+GESG+GKST A +L L K I G ++ Y + ++ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRY---DHLSI 555 Query: 3943 RSNMQVVFQDPFSSLSPRHTIERIVGEGLELHRPDMTPDARRAKSLAVLREV--GLDRTV 3770 R + + ++PF + + E L + + A ++ E LD+ Sbjct: 556 RKRIVYIDENPF-------LFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQY 608 Query: 3769 ---LQRYPHEFSGGQRQRIAIARALVLEPRILILDEPTSALD 3653 L S GQ+QR+A+ARA++ +P++LILDE S +D Sbjct: 609 SYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNID 650 Score = 41.6 bits (96), Expect = 0.033 Identities = 22/60 (36%), Positives = 37/60 (61%) Frame = +2 Query: 248591 LSGGMVKRVGIARAIALEPELLFLDEPTAGLDPQASDEFVELIATLHRTLGLTVVMVTHD 248770 LS G +R+ +ARAI +P++L LDE + +DP D + TLHR + ++++TH+ Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNIDP---DNTKLIYETLHR-MDCLIILITHN 674 >ref|NP_818251.1|gp200 Length = 113 Score = 56.2 bits (134), Expect = 1e-06 Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 1/102 (0%) Frame = +2 Query: 68936 VEINPADLRIDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAM-AM 69112 + + AD ++T R G GGQ+ N D+AVRI H P+G V + Q +RSQ +N+ A M Sbjct: 2 LSVTLADCVVETKRGHGNGGQNRNTRDTAVRIVHPPSGAVGESQEERSQLQNKKTAFRRM 61 Query: 69113 LKSRLYEVEMRKRQAEQDKLESSKTDVGWGHQIRSYVLDQSR 69238 +S +++ ++++ A D +++ W +++ V + + Sbjct: 62 AESSKFQLWLKRQVANDDLIKAQVEREMWPVNLKTEVREDGK 103 >ref|NP_050160.1|hypothetical protein Length = 1487 Score = 51.2 bits (121), Expect = 4e-05 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 2/114 (1%) Frame = -3 Query: 3089 AGMAGKAGDVVVGALNMIGVR--YRWGGNSPDSGLDCSGFVRYVFQDTLGMSLPRRAEEM 2916 + + G+A ++GA+ G Y WG PDS DCSG V+Y + S P + + Sbjct: 1082 SSLDGEAEGGLLGAVEKYGKGKPYVWGSEGPDS-FDCSGLVKYSLERQSVKSFPHYSGDQ 1140 Query: 2915 SRVGEKVSMSNLKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSPSTGSTVRVDDL 2754 + V + GDLVFF R +HVG+Y G+ K + S S + +D++ Sbjct: 1141 YAMSRGVKDPQI--GDLVFFGPGGR--NHVGVYAGNGKVWSARSPRSGIGMDNV 1190 >ref|NP_818206.1|gp133 Length = 948 Score = 50.1 bits (118), Expect = 9e-05 Identities = 34/126 (26%), Positives = 56/126 (44%) Frame = -3 Query: 3143 SLQQTSAQPSSGGAKSFLAGMAGKAGDVVVGALNMIGVRYRWGGNSPDSGLDCSGFVRYV 2964 ++ T+ PS+ A L + A IG Y WG P S DCSG + Sbjct: 488 AIPTTNGSPSAAAAGELLGQPKFNTAGALSFARAQIGRPYVWGATGPAS-YDCSGLMLAA 546 Query: 2963 FQDTLGMSLPRRAEEMSRVGEKVSMSNLKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSPS 2784 ++ ++G+ + R + + +NL PGDL+ + HV ++ G+ VH+P Sbjct: 547 YR-SIGIEIGRTTYDEVATCTTIPPTNLVPGDLI-----QPHDGHVVMWTGNGTVVHAPQ 600 Query: 2783 TGSTVR 2766 TG V+ Sbjct: 601 TGDVVK 606 >ref|NP_835609.1|hypothetical protein Length = 321 Score = 48.5 bits (114), Expect = 3e-04 Identities = 63/251 (25%), Positives = 95/251 (37%), Gaps = 4/251 (1%) Frame = +1 Query: 238066 MRLALVLMGGGARAAYQVGVLKALAEIAREADPQRHTLPFAVVCGSSAGAINATPVASHA 238245 M+ L+L GGGA+ A+Q GV+ L D + V G+S G+IN AS A Sbjct: 1 MKKLLILSGGGAKGAFQAGVISCLVREGALKDNE-----ILAVAGTSVGSINGVWCASRA 55 Query: 238246 DDFSHGVRRLLEFWEPLRADYVYRTDWLGIAAAGARWLATMTFGWAARRSPRGLLDNTPL 238425 G + + W L VY+ W A + R L D +PL Sbjct: 56 ALTPKGTDLMKQMWLSLSPKQVYKQQ--------PEWFALLKTLILKRNY---LYDFSPL 104 Query: 238426 AHLLQRE----LSFHRIEQMLEARLLHALAITALSYSSGRHLTFYQAAEPIQAWRRAQRT 238593 L++ L+F++I L + + T + G +L F P + Sbjct: 105 GKYLEKNVLPLLNFNKIYINCSVNLQNGKS-TGIVVKDGNYL-FEDQEIPEEQKEELLLK 162 Query: 238594 ARLVDXXXXXXXXXXXIPFVFPAVPLVLDGQIEYFGDGSIRQIAPLSPAIHFGADRIVVV 238773 + L IP VFP V + G Y DG +R++ PL F + ++ + Sbjct: 163 SILAS---------CSIPLVFPPVKI---GDNTYV-DGGVREVIPLG----FTIENLIKL 205 Query: 238774 GAADPRPEIPA 238806 P EI A Sbjct: 206 KELKPGEEIQA 216 Score = 46.2 bits (108), Expect = 0.001 Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 5/83 (6%) Frame = +3 Query: 1932 LQNFLNKTLNNRPIEKMAKPLGIVATD---LQSGQPILFQQGNTGL--AVRASCSVPSVF 2096 L NF +N + K GIV D L Q I +Q L ++ ASCS+P VF Sbjct: 115 LLNFNKIYINCSVNLQNGKSTGIVVKDGNYLFEDQEIPEEQKEELLLKSILASCSIPLVF 174 Query: 2097 EPVKIGNREYVDGGLVSPVPASF 2165 PVKIG+ YVDGG+ +P F Sbjct: 175 PPVKIGDNTYVDGGVREVIPLGF 197 >ref|NP_835536.1|hypothetical protein Length = 161 Score = 42.4 bits (98), Expect = 0.020 Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 2/158 (1%) Frame = -2 Query: 43290 MSWGTARAVGADEADVDLHVLWGDETAAIGDLAVMPYTVPHDAREPLQFVFMDGNRRLGV 43111 M+ GT RA+ D L + + IG +++P+ + HDA EP+ F+ LG Sbjct: 1 MTAGTQRAM--DFESHRLCTIKAKQELRIGTWSILPFDIEHDANEPVAFLLQS---TLGY 55 Query: 43110 LTDVGMATPHITAVLSGCDALVLESNHDTAMLAASRYPQSLKARIGGN--HGHLSNAAAA 42937 T ++ +G ++LE N+ + + S+ + + H S A Sbjct: 56 KVLYVTDTKYLKYKFNGITHMMLEVNYIYEQMQENIKNGSVHSALANRIMESHFSLEHAI 115 Query: 42936 DILASLERSRLQHLVAAHLSQQNNLPELARQAFGGVLG 42823 +L + + +RL+ + HLS QN+ + + V G Sbjct: 116 GMLKANDLTRLEEIHLIHLSSQNSNAKYIKSEIQKVTG 153 >ref|NP_818250.1|gp199 Length = 1131 Score = 41.6 bits (96), Expect = 0.033 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Frame = -2 Query: 49818 MPTMNADLHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQATARSEAEALG 49645 M + A LH H S DG P ++A RA G A+TDHD++GG + +A G Sbjct: 1 MSSGKAALHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAG 60 Query: 49644 MRYLSGVE 49621 ++ + G E Sbjct: 61 VKPVLGAE 68 >ref|NP_818239.1|gp188 Length = 318 Score = 40.4 bits (93), Expect = 0.074 Identities = 40/138 (28%), Positives = 55/138 (39%), Gaps = 3/138 (2%) Frame = -2 Query: 126795 GVIFPPSTYWPEIQRICRKYDVLLVADEVIGGFGRTGEWFAHQHFGFEPDLITMAKGLTS 126616 G + P E+ R K +VADE GFGR G + HQ +GF PD I Sbjct: 117 GRLVAPEVVLDEVDR-ATKSGRTVVADESATGFGRLGRIWGHQAYGFTPDAIIFGGPAGG 175 Query: 126615 GYVPMGAVGIHERVARPIIDNGEFNHGLTYSGHPXXXXXXXANLKLLRDEGIVERVKTDI 126436 G G +G E + + +G P A L + E ++E V+ + Sbjct: 176 GLTLGGVIGPAELLDDAFVG--------PMAGAPLACATGAATLAAINPE-LLEHVREE- 225 Query: 126435 GPYFQRRLR---DVLGDH 126391 G F RLR D GD+ Sbjct: 226 GVTFGERLRALVDRFGDY 243 Score = 40.4 bits (93), Expect = 0.074 Identities = 53/193 (27%), Positives = 79/193 (40%), Gaps = 3/193 (1%) Frame = -2 Query: 211575 GVHLIADEIAVGCGRTGTFFACEQAGVWPDFMCLSKGISGGYLPLSLVLTRDDVFAAFYD 211396 G ++ADE A G GR G + + G PD + G +GG L L V+ ++ Sbjct: 136 GRTVVADESATGFGRLGRIWGHQAYGFTPDAIIFG-GPAGGGLTLGGVIGPAELL----- 189 Query: 211395 DDTTRGFLHSHSYTGNPLACRAAVATLDLFARDDVLASNARKSATLRAALAPLDAHRQVR 211216 DD G G PLAC ATL ++L + T L L R Sbjct: 190 DDAFVG-----PMAGAPLACATGAATLAAI-NPELLEHVREEGVTFGERLRAL-VDRFGD 242 Query: 211215 HLRERGTLFAFDVTLD---GDAARGFSRRFFEHALERELLLRPIGTTVYLMPPYVMSDDD 211045 +L + + TLD AR F +H L L P+G+TV + P + S+ + Sbjct: 243 YLADTAGSGLYH-TLDFRSPQLARKFEVSTRQHGL---LTAPPVGSTVVVTPTLIASERE 298 Query: 211044 IAWLAQRTRDTLD 211006 +A + +TL+ Sbjct: 299 LARGVELIAETLE 311 >ref|NP_058483.1|orf 44 Length = 161 Score = 40.0 bits (92), Expect = 0.097 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 4/132 (3%) Frame = -2 Query: 43206 IGDLAVMPYTVPHDAREPLQFVFMDGNRRLGVLTDVGMATPHITAVLSGCDALVLESNHD 43027 IG +++P+ + HDA EP+ F+ LG T ++ +G ++LE N+ Sbjct: 27 IGTWSILPFDIEHDANEPVAFLLQS---TLGYKVLYVTDTKYLKYKFNGITHMMLEVNYI 83 Query: 43026 TAMLAAS----RYPQSLKARIGGNHGHLSNAAAADILASLERSRLQHLVAAHLSQQNNLP 42859 + + + +L RI +H L +A +L + + +RL+ + HLS QN+ Sbjct: 84 YEQIQENIKNGSWHSTLANRIMESHFSLEHAIG--MLKANDLTRLEEIHLVHLSSQNSNA 141 Query: 42858 ELARQAFGGVLG 42823 + + V G Sbjct: 142 KYIKSEIQKVTG 153 >ref|NP_958209.1|gene 33 protein Length = 322 Score = 38.5 bits (88), Expect = 0.28 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 6/79 (7%) Frame = +1 Query: 6238 AEIGDQLGREPDQREQVQRAEHDRVIAPHDRLVRQQPEAVEREQRLDQQAAGEER----- 6402 AEI RE + + +RAE +R+ A R R+ EA ER +R Q A ER Sbjct: 187 AEIEAAARREAEAKAAAERAERERIEA-EQRAQREAKEAAERAEREKQAAIEAERRKAQE 245 Query: 6403 -TDERGREADDQRQHRIAE 6456 + REA+ + Q RIAE Sbjct: 246 EAERIRREAEAKEQARIAE 264 >ref|NP_064745.1|gp7 Length = 540 Score = 37.7 bits (86), Expect = 0.48 Identities = 34/137 (24%), Positives = 57/137 (41%) Frame = +3 Query: 106005 AGAWPSISGASATRSSCGAPPRRLSSTARRISSTALSTSNGFARYSNAPPWNAATALSRS 106184 AGA + + ASAT S+ A S++ S++A + S G A S N+AT+ S S Sbjct: 122 AGASETAASASATASATSATNSATSASQAATSASAAAVSEGNAATSETNAANSATSASGS 181 Query: 106185 ENAVMMMTGRPGSRSCIACSNSRPEPPGIRMSDTSTCGVSWSSAASASRTFAKLFVAKLS 106364 + S + ++ +N+ S T+ ++A S + A S Sbjct: 182 ASTATTQ----ASAASVSATNAATSASNAATSATNAAASQAAAATSETNAAASESTVTTS 237 Query: 106365 RASAFSSTQRIDWSSST 106415 +A +S S+ST Sbjct: 238 ATNAATSEANAATSAST 254 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 890,902,648 Number of Sequences: 14420 Number of extensions: 16882383 Number of successful extensions: 65468 Number of sequences better than 0.5: 16 Number of HSP's better than 0.5 without gapping: 11601 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 65372 length of database: 3,019,461 effective HSP length: 127 effective length of database: 1,188,121 effective search space used: 99204539137 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig277 (233,024 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_899369.1|GTP cyclohydrolase I 123 6e-27 ref|NP_680501.1|hypothetical protein 105 1e-21 ref|NP_542554.1|putative DNA-dependent DNA polymerase 103 7e-21 ref|NP_817767.1|gp6 102 1e-20 ref|NP_758949.1|ORF58 94 4e-18 ref|NP_076827.1|Csp 86 2e-15 ref|NP_899330.1|DNA polymerase 82 3e-14 ref|YP_195168.1|DNA polymerase gp43 80 8e-14 ref|NP_945089.1|gp58 79 2e-13 ref|NP_049662.1|gp43 DNA polymerase 66 1e-09 ref|NP_943827.1|gp49 65 3e-09 ref|NP_861746.1|gp43 DNA polymerase 64 5e-09 ref|NP_891597.1|DNA polymerase 63 1e-08 ref|NP_818239.1|gp188 60 7e-08 ref|NP_612844.1|Gp15 protein 59 1e-07 ref|NP_835679.1|similar to DNA-directed DNA polymerase 59 2e-07 ref|NP_046877.1|putative non-heme haloperoxidase 58 3e-07 ref|NP_817650.1|gp61 58 4e-07 ref|NP_932391.1|DNA polymerase, N-terminal fragment 57 6e-07 ref|NP_046584.1|putative transglycosylase 56 2e-06 ref|NP_663686.1|structural protein 55 2e-06 ref|NP_943895.1|DNA polymerase 55 2e-06 ref|NP_108727.1|minor structural protein 3 55 3e-06 ref|NP_112710.1|ORF47 55 4e-06 ref|NP_076626.1|endopeptidase 55 4e-06 ref|NP_690787.1|immunity repressor 51 4e-05 ref|NP_620626.1|putative transposase 49 2e-04 ref|NP_695158.1|minor capsid protein 48 3e-04 ref|NP_944371.1|gp63 47 0.001 ref|NP_932390.1|DNA polymerase, C-terminal fragment 47 0.001 ref|YP_053021.1|hypothetical protein 45 0.002 ref|YP_024425.1|outer capsid protein 45 0.002 ref|NP_835564.1|hypothetical protein 45 0.003 ref|NP_958615.1|77ORF001 45 0.003 ref|YP_195243.1|hypothetical protein 45 0.004 ref|NP_803396.1|tail length tape measure protein 43 0.014 ref|NP_058454.1|orf 16 43 0.014 ref|NP_061640.1|phi PVL ORF 15 and 16 homologue 42 0.018 ref|NP_536425.1|putative helix-turn-helix transcriptional regulator 42 0.018 ref|NP_945111.1|gp80 42 0.018 ref|NP_958209.1|gene 33 protein 42 0.024 ref|YP_195256.1|hypothetical protein 41 0.041 ref|NP_665964.1|putative plasmid partitioning protein Soj 41 0.053 ref|NP_536389.1|conserved hypothetical protein 40 0.070 ref|NP_945063.1|gp32 40 0.070 ref|YP_164321.1|hypothetical protein 39 0.16 ref|NP_818297.1|gp247 39 0.20 ref|NP_612994.1|hypothetical protein 39 0.27 ref|NP_049482.1|serine 39 0.27 ref|YP_006559.1|PmgS 38 0.35 ref|YP_164086.1|tail length tape measure protein 38 0.35 >ref|NP_899369.1|GTP cyclohydrolase I Length = 222 Score = 123 bits (309), Expect = 6e-27 Identities = 67/178 (37%), Positives = 108/178 (60%), Gaps = 1/178 (0%) Frame = +3 Query: 175518 EDAVRVLLRWAGDDPAREGLLDTPARVVRAY-EQFFAGYALEPRDILARTFSEVDGYDEM 175694 ED +++ G D + + L+DTP R + + +G + + ++++ YD+M Sbjct: 43 EDRFTDIMQALGLDLSDDSLVDTPKRWAKMMVNELMSGLSPDMFPKCTAVDNKMN-YDQM 101 Query: 175695 IVLKDIRFESYCEHHMVPIIGRAHVAYLPNHRVVGISKLARLVDAFAKRLQIQEKMTVQI 175874 + K I S CEHH+V I G A VAY+P ++V+G+SK+ R+V+ FA+R QIQE++TVQI Sbjct: 102 VCEKGITVLSQCEHHIVTIDGFATVAYIPKNKVLGLSKMNRIVEYFARRPQIQERLTVQI 161 Query: 175875 ADTLFDVLQPKGVGVILEAAHQCISTRGVHKPGVEMVTSRMLGTFRTDPSTRREFLSI 176048 A+ L +L+ + V V+++A H C+ RGV VTS + G FR +P R EF+S+ Sbjct: 162 AEALKFILETEDVAVLIDAKHYCVKARGVEDNNSSTVTSHLSGAFRNEPEARAEFMSL 219 >ref|NP_680501.1|hypothetical protein Length = 300 Score = 105 bits (263), Expect = 1e-21 Identities = 79/294 (26%), Positives = 138/294 (46%), Gaps = 2/294 (0%) Frame = +3 Query: 129660 RITYDGPTLDSSEMDVRELAPALLAFGDLLDASTRALCGAQVRPQVNVRGSFKTGSFGID 129839 ++ Y G L +++M V +LAP+LLA +L + + ++++ + K GSF +D Sbjct: 7 KVHYQGEALKNNQMSVEDLAPSLLALAAVLKQIQQIYNPEEKPLSLDIKATDK-GSFIVD 65 Query: 129840 FTLATSLLGRMRDMLSGNEGTALANAVTILTALGIAAPRARKGLFAVLKWLRGREI--TH 130013 L+T + +LSG+ TA AN + +TA G GL A++K R+I Sbjct: 66 LILSTP--HEIISILSGDAATAGANLLAYVTAFG--------GLIALIKKAATRKIKANK 115 Query: 130014 VRMQNNTAVLDVDGDELEIDLPVLTLLSDVRVRQAIAQVLAPLAREGIEIFAAGTDTEVY 130193 V + + DG EL I L V VR+++ +V+ P ++GIE + + Sbjct: 116 VLKSGDVRLTFDDGTELTIPSETLRAYKSVEVRRSMDKVVEPTRKQGIESVQFESAKKES 175 Query: 130194 ETVAHNEIAWFHAPEPTDSLLLDEHRKMAFSIVSLAFKDDNKWRLYDGTSTIHATITDAG 130373 T++ + F PE + + +++++F+ KW+ DG + +A I D Sbjct: 176 YTISKQDADAFIPPEVPEKEFEPVVSEEYLQLITVSFQKGGKWKFSDGANQFYAAIEDED 235 Query: 130374 FLSRVNNSQISFSKGDVLLCNVRMQQWQTSDGAKTEYEVTDVLEHRPAGLQIRL 130535 F+ V +Q F D L +R Q T G K++ + VL+H P Q++L Sbjct: 236 FVRAVMFNQDRFGSTDTLKVRLRKTQTMTEKGLKSDVVIEKVLQHIPGSKQLQL 289 >ref|NP_542554.1|putative DNA-dependent DNA polymerase Length = 854 Score = 103 bits (257), Expect = 7e-21 Identities = 121/528 (22%), Positives = 208/528 (39%), Gaps = 46/528 (8%) Frame = +3 Query: 62931 MLARLNDWFDRHDPDAVIGWNLVQFDLRILHAHAEQYGIPL-KLGRGGSALDWRAHGQQP 63107 ML + + D D V+GWN FD + ++ G+ +L R G+ + +G Sbjct: 224 MLTEFAKYVNEKDSDLVVGWNSNGFDTPFVIERMKERGVNADRLSRTGNT--YTGYGGPT 281 Query: 63108 DHFFAGAAGRLILDGIDMLKSATWTFPSFSLEYVSQSLLGEGKSIDNPYQRMDEIQRRFE 63287 GR D +D K +T S SL+ +Q L + K I++ + E+ + Sbjct: 282 ------IQGRTCYDLMDAWKDTKFTKVSGSLDNAAQMELEDAK-IEHTDKGFYEL---YS 331 Query: 63288 HDKPALARYNLKDCELVTRIFDKADLLSFALERASVTGLAADRTGGSVAAFTHLYLPRMH 63467 + YN KD L + D A++L+F GL ++T + + ++H Sbjct: 332 ENTQKFLNYNTKDVSLTVGVNDAANVLAFKKALRDTIGLDFEQTTANNEFIEMMIRRKLH 391 Query: 63468 RLGYVAPNLG-DVTGQNSPGGFVMDSRPGLYDSVLVFDYKSLYPSIIRTF------LIDP 63626 GY P + G +V + GL ++V+ D SLYP+ + +DP Sbjct: 392 TEGYAGPTANPPEETEKYDGAYVFPAFNGLKENVVGIDLASLYPNTLWMLNASPETKVDP 451 Query: 63627 V-------GLIEGLANPGD-----DASVPGFLGARFSRTAHCLPDIVRRVWEGRDDAKRQ 63770 + GL L GD A+ + + L D R+ E + K+ Sbjct: 452 LYVEEHDDGLYAVLEEGGDLVPVAKAANDVYFRLDYDGVFRELVDEALRLKEHAGEMKKD 511 Query: 63771 HNAPLSQ---------ALKIIMNSFYGVLGSTGCRFFDPRLASSITMRGHEIMHRTRTLI 63923 + + K I+NS YGVLG +D +A+++T+ G ++ RT + Sbjct: 512 DSLSAEEKSKWAEEYSVRKTIVNSIYGVLGWARFFLYDDDIAAAVTLTGQAVIKRTAKYV 571 Query: 63924 EAQGY-EVIYGDTDSTFVWLGRAHDDDEAGAKGRALVEHVNRWWHVHLREQFGLDS---A 64091 + + V YGDTDS ++ + + E A+ + +N +V L ++G+ + Sbjct: 572 DEESIANVAYGDTDSNYIEFDSSMNQRECLEAADAITDKLNNEVYVDLAAEYGMPTDPCR 631 Query: 64092 LELQYERHYRRFLMPTVRGAEEGSKKRYA-------GL---AATADGGEDLVFKGLETVR 64241 +++ E + F M G KK YA G+ A DG L G + Sbjct: 632 FDIEIEMYASHFFM-------SGQKKFYAYTKVWDEGMDYDATLKDGKGKLSISGYPCKK 684 Query: 64242 TDWTPLAQQFQRELYRRVFRREPYQD---FVRDYVRRTLAGEFDDQLV 64376 + L ++ QRE + R D +R+ R A D L+ Sbjct: 685 ANTAQLTKEVQRETLETIVRGGESDDIRRIIREGAERIDASNPDFDLI 732 >ref|NP_817767.1|gp6 Length = 191 Score = 102 bits (255), Expect = 1e-20 Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 2/131 (1%) Frame = +3 Query: 175584 TPARVVRAYEQFFAGYALEPRDILARTFSEVDGYDEMIVLKDIRFESYCEHHMVPIIGRA 175763 TP R +A+ +GY +P D L TFS D + ++L ++ +S C HH++P G A Sbjct: 29 TPLRSAKAWSDILSGYREDPADHLEVTFSAPDDPGQ-VILAGVQLQSMCAHHLLPFTGMA 87 Query: 175764 HVAYLPN--HRVVGISKLARLVDAFAKRLQIQEKMTVQIADTLFDVLQPKGVGVILEAAH 175937 VAY P+ RVVG+SKL+R+V +A+RLQ+QE++ D + L+P G V++ A+H Sbjct: 88 TVAYRPSPGDRVVGLSKLSRVVQGYARRLQVQERIGADTVDAIMARLRPAGAVVLITASH 147 Query: 175938 QCISTRGVHKP 175970 C+ RG +P Sbjct: 148 DCMRLRGAQEP 158 >ref|NP_758949.1|ORF58 Length = 210 Score = 94.4 bits (233), Expect = 4e-18 Identities = 52/174 (29%), Positives = 99/174 (56%), Gaps = 2/174 (1%) Frame = -2 Query: 228904 AEIIAVTQQKGGVGKSTIAMHLGAAFHEKGKRVLVIDADRQNTLVHWSSASGDSDNGIPF 228725 A++IA+ QKGG GK+TI+ ++ + H G +VL++D D Q + WS + + + Sbjct: 20 AKLIAILNQKGGAGKTTISTNVASQLHADGHKVLLVDLDPQGSATDWSEQAEEGSEAV-- 77 Query: 228724 PVVNLAEADGQIHREIKKFINDYDIIV-VDCPPSITEKVSGVVLLAASIAVIPTSSSPAD 228548 PV+ + + +I K + Y+ +V VD P + + ++ + AA + +IPT SP D Sbjct: 78 PVIRMGKT---CTCDIHKVASGYEYLVSVDGAPQVAD-LAATAVRAADMVLIPTQPSPYD 133 Query: 228547 YWSSVGLVKLIQQAQVMNEDL-RAVFLLNKTEEKRMLTRELKRALEELGFPLLK 228389 WS+ LV++++ Q + + + +A F++++ ++ L E+K AL+ P+LK Sbjct: 134 CWSAAELVEIVKARQEVTDGIPKAAFIISRAIKRTKLEAEIKEALDYYELPILK 187 >ref|NP_076827.1|Csp Length = 66 Score = 85.5 bits (210), Expect = 2e-15 Identities = 41/64 (64%), Positives = 49/64 (76%) Frame = -2 Query: 157720 MDTGTVKWFNDNKGFGFITPDSGGDDLFAHFSEIRGDGFKTLAEGQKVSYETKNGPKGLQ 157541 M GTVKWFN +KGFGFIT + G DLFAHFS I+ DGFK+L EGQKV ++ + G +GLQ Sbjct: 1 MANGTVKWFNADKGFGFITSEEG-KDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQ 59 Query: 157540 ASNI 157529 A NI Sbjct: 60 AVNI 63 >ref|NP_899330.1|DNA polymerase Length = 850 Score = 81.6 bits (200), Expect = 3e-14 Identities = 131/575 (22%), Positives = 217/575 (37%), Gaps = 90/575 (15%) Frame = +3 Query: 62913 CDSRPAMLARLNDWFDRHDPDAVIGWNLVQFDLR-ILHAHAEQYGIPLK-----LGRGGS 63074 C + +L + ++ P V GWN+ FD+ I++ + +G + G+ Sbjct: 171 CATEKELLVKYLQFWREKTPAIVTGWNIESFDMPYIVNRYKNLFGEKVMNSLSPWGKVQV 230 Query: 63075 ALDWRAHGQQPDHFFAGAAGRLILDGIDMLKSATW-TFPSFSLEYVSQSLLGEGKSIDNP 63251 + +GQ+ G LD + + K T+ T PS+ L+Y+ + L E K Sbjct: 231 STTVNDYGQEICK--VNILGVSELDYLQLYKKFTYVTRPSYRLDYIGEVELDEKKV---E 285 Query: 63252 YQRMDEIQRRFEHDKPALARYNLKDCELVTRIFDKADLLSFALERASVTGLAADRTGGSV 63431 +++ + ++ +E D Y ++D LV R+ +K L+ + A G+ G++ Sbjct: 286 FEQANYLEF-YEQDYQNFIDYQIQDVNLVKRLDEKLQLMLLTISLAYYAGINYQTVLGTI 344 Query: 63432 AAFTHLYLPRMHRLGYVAPNLGDVTGQNSPGGFVMDSRPGLYDSVLVFDYKSLYPSIIRT 63611 + + + V P + G G FV + G + + FD SLYPSIIR Sbjct: 345 KPWDAIIFNSLKAEKKVVPMMRSHEGGRFMGAFVKAPQVGYHRGIGSFDLTSLYPSIIRE 404 Query: 63612 FLIDP---VG--------------LIEGLAN-PGDDAS-----------VPGFLGARFSR 63704 I P VG ++EGL P D+ S V G + + Sbjct: 405 CNISPETIVGQLDYEGSLEDRIDKIVEGLITFPADELSNSANGMQYRKDVRGVIPVEIEK 464 Query: 63705 TAHCLPDIVRRVWEGRDDA---------------------KRQHNAPL----SQALKIIM 63809 ++ +E A + +H A + A KI++ Sbjct: 465 VFFQRKANKKKAFEYEQQAIDIQKQMDEQGETPELRAAYEEAKHQAKIYDVQQMARKILI 524 Query: 63810 NSFYGVLGSTGCRFFDPRLASSITMRGHEIMH---------RTRTLIEAQGYEVIYGDTD 63962 NS YG LG+ RF+D R A ++T G + + VIYGDTD Sbjct: 525 NSLYGALGNEYFRFYDLRNAEAVTAYGQLAIKWVARDVNIWLNKVCKTTDKDYVIYGDTD 584 Query: 63963 STFV---------WLGRAHDDD--EAGAKGRALVEH--VNRWWHVHLREQFGLDSALELQ 64103 S +V + + DD + AK VE +N + AL Sbjct: 585 SIYVNFDPLLELTGINKLEGDDYTDKFAKVCETVETKVINPSY-----------EALHKY 633 Query: 64104 YERHYRRFLMPTVRGAEEG---SKKRYAGLAATADG--GEDLVFKGLETVRTDWTPLAQQ 64268 + R+ M A G +KKRYA +G L G+ET R+ PL Q+ Sbjct: 634 MNTYERQMFMDREVLARTGFFIAKKRYALDVQDNEGIRKPKLKIMGIETQRSSTPPLCQK 693 Query: 64269 FQRELYRRVFR--REPYQDFVRDYVRRTLAGEFDD 64367 +E R + + Q+FV+ Y + A + + Sbjct: 694 GLKEAIRLILQEGEAKLQEFVKGYEKEFKAAPYQE 728 >ref|YP_195168.1|DNA polymerase gp43 Length = 830 Score = 80.1 bits (196), Expect = 8e-14 Identities = 95/415 (22%), Positives = 167/415 (40%), Gaps = 52/415 (12%) Frame = +3 Query: 62895 DFDLDYCDSRPAMLARLNDWFDRHDPDAVIGWNLVQFDL-----RILHAHAEQYGIPLKL 63059 D D + + ML ++ + PD + GWN+ FD+ RI E+ L Sbjct: 158 DVDYMHFGTEVGMLNAFLHFWTSNYPDVITGWNVQLFDMTYISRRIERVIGEKEAKLLSP 217 Query: 63060 GRGGSALDWRAHGQQPDHFFAGAAGRLILDGIDMLKSATWTFP-SFSLEYVSQSLLGEGK 63236 + A + G++ + +G LD +++ K T+T S+ L++++ LG K Sbjct: 218 WKSTLAREIYIKGRKQIAY--DISGVATLDYLELYKKFTYTNQESYRLDHIASVELGTKK 275 Query: 63237 SIDNPYQRMDEIQRRFEHDKPALARYNLKDCELVTRIFDKADLLSFALERASVTGLAADR 63416 + Y E + D YN+ D LV ++ DK LL A A + + Sbjct: 276 LDHSEYDTFKEF---YTKDWQKFVEYNIIDVRLVDQLDDKMKLLELAFTMAYDAKVNYED 332 Query: 63417 TGGSVAAF-THLYLPRMHRLGYVAPNLGDVTGQNSPGGFVMDSRPGLYDSVLVFDYKSLY 63593 V + ++Y+ + + P G +V + +PG YD V+ FD SLY Sbjct: 333 VFSQVRMWDNYIYIELLKNKIAIPPKKEARKDAKYAGAYVKEPKPGFYDWVVSFDLNSLY 392 Query: 63594 PSIIRTFLIDPVGL---------IEGLANPGDDASVPGFLGARFSRTAH------CLPDI 63728 P +I + + P L ++ L N D S + T + LP + Sbjct: 393 PHLIMQYNLSPETLLSHRHPTANVDRLLNKELDLSNLDGQSLAANGTFYDNSKQGFLPKM 452 Query: 63729 VRRVWEGRDDAKRQHNAP---------------------LSQALKIIMNSFYGVLGSTGC 63845 ++++++ R K + A + A KI +NS YG +G+ Sbjct: 453 MQKMYDERVVYKNKMLAAKQKYEENPTIELKKEIARCNNIQMAKKISLNSAYGAIGNEHF 512 Query: 63846 RFFDPRLASSITMRG--------HEIMHRTRTLIEAQGYE-VIYGDTDSTFVWLG 63983 R+F +A +IT+ G +++ L++ G + VI DTDS ++ LG Sbjct: 513 RYFRLEIAEAITLSGQLSIRWIENKMNEYLNKLLKTDGEDYVIASDTDSIYLNLG 567 >ref|NP_945089.1|gp58 Length = 297 Score = 78.6 bits (192), Expect = 2e-13 Identities = 73/257 (28%), Positives = 117/257 (45%), Gaps = 4/257 (1%) Frame = -2 Query: 214507 PNLDDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRVAMLEAQLGTRLLHRSTRRMTVTDA 214328 P L L F R +F+ AAE+L V+ VSK+V LE LGT L R + + +T A Sbjct: 7 PPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRA 66 Query: 214327 GERVFARAEKILDDVDHLVEDVSTTRTVPRGTLRMSSSFGFGRHVVAPALLDFSARYPQL 214148 G++ R IL D V +T T+ +S G +A + +FSA +P++ Sbjct: 67 GQQYADRVHAILADCVEATALVMKEQTPHSLTIACAS--GTATLFLADRIAEFSAEHPEV 124 Query: 214147 NVRLDLFDRLVDVAGEGYDLDVRIGDEIADHLIARR--LATNHRVLCASPDYLARRGTPR 213974 +VR+ + + + ++ +D+ V ++ IA +A + CA P +LA R P Sbjct: 125 SVRILVREGVFNLNAAEF