Prophage Finder Output

Genome file:  temp/burkholderia_strain.txt
Sequence Header:  >Contig22

Genome size:  1395092
Host's GC content:  65.27
Predicted Codon Position GC:  	1st:  67.04	 2nd:  44.32	 3rd:  78.15

 

Prophage Finder Output

Genome file:  temp/burkholderia_strain.txt
Sequence Header:  >Contig23

Genome size:  3694077
Host's GC content:  66.21
Predicted Codon Position GC:  	1st:  67.62	 2nd:  44.58	 3rd:  79.72

 >PredictedProphage1 
 Length:   11613 
 Number of hits =   6 
 GC	Coding	First	Second	Third
 61.90 	 61.81 	 63.31 	 46.76 	 75.37 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 2874773	2874961	-1	ref|YP_024947.1|gp27 	109bits(272)	2e-21
 2876294	2876809	-1	ref|NP_073695.1|neck appendage protein precursor	110bits(275)	7e-22
 2877773	2878825	-1	ref|YP_024938.1|gp18 	286bits(733)	5e-75
 2878892	2879059	-1	ref|YP_024921.1|gp01 	103bits(257)	8e-20
 2883198	2884163	-1	ref|YP_024966.1|putative primase	423bits(1088)	1e-116
 2885198	2886385	-1	ref|YP_024945.1|gp25 	290bits(741)	6e-76
 


Prophage Finder Output

Genome file:  temp/burkholderia_strain.txt
Sequence Header:  >Contig24

Genome size:  3587137
Host's GC content:  66.73
Predicted Codon Position GC:  	1st:  67.94	 2nd:  44.72	 3rd:  80.61

 >PredictedProphage1 
 Length:   14520 
 Number of hits =   5 
 GC	Coding	First	Second	Third
 65.57 	 66.72 	 69.16 	 45.31 	 85.69 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 765243	765605	-1	ref|NP_945089.1|gp58 	47.8bits(112)	0.005
 768669	769406	1	ref|NP_945089.1|gp58 	57.8bits(138)	5e-06
 771857	772342	-1	ref|NP_958209.1|gene 33 protein	43.9bits(102)	0.076
 777452	778330	1	ref|NP_945089.1|gp58 	280bits(716)	5e-73
 778581	779762	1	ref|NP_945090.1|gp59 	477bits(1228)	1e-132
 
 >PredictedProphage2 
 Length:   16603 
 Number of hits =   6 
 GC	Coding	First	Second	Third
 66.64 	 68.38 	 71.00 	 43.87 	 90.27 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 1283155	1283838	1	ref|NP_945089.1|gp58 	64.7bits(156)	4e-08
 1286406	1286744	1	ref|NP_945089.1|gp58 	68.2bits(165)	4e-09
 1289308	1289805	-1	ref|NP_945089.1|gp58 	52.4bits(124)	2e-04
 1293611	1294042	1	ref|NP_945090.1|gp59 	42.7bits(99)	0.17
 1298264	1298638	-1	ref|NP_945089.1|gp58 	63.9bits(154)	7e-08
 1298879	1299757	1	ref|NP_945089.1|gp58 	84.7bits(208)	4e-14
 
 >PredictedProphage3 
 Length:   6338 
 Number of hits =   5 
 GC	Coding	First	Second	Third
 63.98 	 63.97 	 73.49 	 30.39 	 88.03 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 2173324	2174109	1	ref|NP_803663.1|ORF097 	48.1bits(113)	0.004
 2174275	2175144	1	ref|NP_803663.1|ORF097 	43.5bits(101)	0.100
 2175484	2176371	1	ref|NP_803663.1|ORF097 	58.9bits(141)	2e-06
 2177197	2178705	1	ref|NP_803663.1|ORF097 	79.3bits(194)	2e-12
 2179155	2179661	-1	ref|NP_064745.1|gp7 	46.2bits(108)	0.015
 
 >PredictedProphage4 
 Length:   16087 
 Number of hits =   13 
 GC	Coding	First	Second	Third
 58.83 	 62.08 	 65.26 	 46.53 	 74.44 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 2839194	2840327	1	ref|NP_848235.1|integrase 	64.7bits(156)	4e-08
 2840428	2840571	-1	ref|NP_042041.1|transcriptional regulator	41.6bits(96)	0.38
 2840638	2840844	1	ref|NP_945067.1|gp36 	88.6bits(218)	3e-15
 2841632	2841961	-1	ref|NP_944277.1|hypothetical protein	125bits(314)	2e-26
 2844930	2845049	-1	ref|YP_024962.1|gp42 	43.1bits(100)	0.13
 2845760	2845822	1	ref|NP_536407.1|hypothetical protein	43.5bits(101)	0.100
 2845837	2846316	1	ref|NP_536417.1|hypothetical protein	228bits(581)	2e-57
 2846501	2846734	1	ref|NP_536422.1|hypothetical protein	78.6bits(192)	3e-12
 2846752	2846991	1	ref|NP_944247.1|hypothetical protein	71.2bits(173)	4e-10
 2851654	2853339	1	ref|NP_758915.1|ORF22 	392bits(1008)	1e-107
 2853899	2854396	1	ref|NP_918995.1|putative portal protein	63.2bits(152)	1e-07
 2854403	2854732	1	ref|NP_046584.1|putative transglycosylase	69.3bits(168)	2e-09
 2855125	2855280	1	ref|NP_536389.1|conserved hypothetical protein	90.5bits(223)	7e-16