Prophage Finder Output Genome file: temp/brevibacteriumlc.txt Sequence Header: >Scaffold1 Genome size: 1811970 Host's GC content: 60.97 Predicted Codon Position GC: 1st: 64.40 2nd: 43.16 3rd: 70.86 >PredictedProphage1 Length: 15136 Number of hits = 5 GC Coding First Second Third 62.97 64.54 69.27 46.28 78.05 Left Right Strand Best Blast Hit Score Evalue 297438 298517 1 ref|NP_818503.1|gp203 348bits(893) 8e-94 301627 302574 1 ref|NP_817564.1|gp117 404bits(1037) 1e-110 306029 306592 1 ref|NP_958267.1|hypothetical protein 43.9bits(102) 0.041 311962 312315 -1 ref|NP_108682.1|cI2009 44.3bits(103) 0.031 312376 312573 -1 ref|NP_943752.1|putative protein 6 40.4bits(93) 0.45 >PredictedProphage2 Length: 14268 Number of hits = 6 GC Coding First Second Third 43.05 63.70 67.01 44.43 79.67 Left Right Strand Best Blast Hit Score Evalue 861827 862408 1 ref|NP_445672.1|putative helicase 78.2bits(191) 2e-12 862772 863185 1 ref|NP_445672.1|putative helicase 51.6bits(122) 2e-04 866820 867485 -1 ref|NP_958252.1|hypothetical protein 114bits(285) 2e-23 867894 868430 -1 ref|YP_006958.1|flap endonuclease 51.6bits(122) 2e-04 869890 870405 1 ref|NP_599056.1|bactoprenol glucosyltransferase 47.4bits(111) 0.004 875873 876094 1 ref|YP_195193.1|hypothetical protein 78.6bits(192) 1e-12 Prophage Finder Output Genome file: temp/brevibacteriumlc.txt Sequence Header: >Scaffold2 Genome size: 1391191 Host's GC content: 61.05 Predicted Codon Position GC: 1st: 64.44 2nd: 43.18 3rd: 70.99 Prophage Finder Output Genome file: temp/brevibacteriumlc.txt Sequence Header: >Scaffold3 Genome size: 692767 Host's GC content: 61.19 Predicted Codon Position GC: 1st: 64.53 2nd: 43.22 3rd: 71.23 >PredictedProphage1 Length: 8748 Number of hits = 5 GC Coding First Second Third 41.23 61.36 65.54 45.65 72.88 Left Right Strand Best Blast Hit Score Evalue 659457 660140 1 ref|YP_024488.1|putative glycerophosphoryl diester phosphodiesterase 57.8bits(138) 1e-06 661379 661906 1 ref|NP_542359.1|memb3 41.6bits(96) 0.084 662992 663852 -1 ref|NP_859396.1|hypothetical protein 153bits(387) 2e-35 663867 664157 -1 ref|NP_958230.1|gene 56 protein 44.7bits(104) 0.010 667914 668204 -1 ref|NP_859398.1|hypothetical protein 53.5bits(127) 2e-05 Prophage Finder Output Genome file: temp/brevibacteriumlc.txt Sequence Header: >Scaffold4 Genome size: 197416 Host's GC content: 62.91 Predicted Codon Position GC: 1st: 65.59 2nd: 43.69 3rd: 74.14 >PredictedProphage1 Length: 12005 Number of hits = 6 GC Coding First Second Third 63.38 66.41 68.08 48.20 82.94 Left Right Strand Best Blast Hit Score Evalue 19156 19341 -1 ref|NP_859396.1|hypothetical protein 51.2bits(121) 3e-05 21418 21681 -1 ref|NP_859398.1|hypothetical protein 52.4bits(124) 2e-05 24518 24967 1 ref|NP_818445.1|gp145 82.0bits(201) 2e-14 25426 25791 1 ref|NP_817624.1|gp35 80.5bits(197) 5e-14 30249 30629 1 ref|NP_943827.1|gp49 90.1bits(222) 7e-17 30891 31160 1 ref|NP_569753.1|putative tape-measure protein 41.2bits(95) 0.035 >PredictedProphage2 Length: 13827 Number of hits = 8 GC Coding First Second Third 64.09 63.50 63.04 43.24 84.21 Left Right Strand Best Blast Hit Score Evalue 52035 56741 1 ref|NP_944303.1|conserved phage mega protein 668bits(1724) 0.0 57112 57540 1 ref|NP_835537.1|single-strand DNA-binding protein 42.4bits(98) 0.016 60059 60181 -1 ref|NP_039700.1|predicted 6.3Kd protein 38.9bits(89) 0.17 60339 61541 -1 ref|NP_039697.1|observed 41.8Kd protein 111bits(278) 2e-23 61946 62884 -1 ref|NP_046714.1|unknown 256bits(655) 4e-67 63111 65159 -1 ref|YP_024510.1|putative ribonucleotide reductase large subunit 474bits(1220) 1e-132 65252 65611 -1 ref|YP_024509.1|putative NrdI protein 71.2bits(173) 3e-11 65640 65861 -1 ref|NP_817487.1|gp37 60.8bits(146) 4e-08 >PredictedProphage3 Length: 15204 Number of hits = 5 GC Coding First Second Third 56.37 62.05 58.92 44.11 83.12 Left Right Strand Best Blast Hit Score Evalue 77127 77681 1 ref|NP_932589.1|hypothetical protein 45.1bits(105) 0.002 81344 81715 -1 ref|NP_612844.1|Gp15 protein 86.7bits(213) 7e-16 84568 84723 -1 ref|NP_818251.1|gp200 54.3bits(129) 4e-06 88683 88937 1 ref|NP_542568.1|putative methyltransferase-endonuclease 56.2bits(134) 1e-06 91785 92330 1 ref|YP_195267.1|putative helicase 40.0bits(92) 0.078 Prophage Finder Output Genome file: temp/brevibacteriumlc.txt Sequence Header: >Scaffold5 Genome size: 187433 Host's GC content: 62.50 Predicted Codon Position GC: 1st: 65.34 2nd: 43.58 3rd: 73.45 >PredictedProphage1 Length: 7548 Number of hits = 6 GC Coding First Second Third 60.93 61.32 65.01 45.35 73.60 Left Right Strand Best Blast Hit Score Evalue 84079 84504 -1 ref|NP_536362.1|putative major capsid protein 55.5bits(132) 2e-06 84744 85139 -1 ref|NP_958278.1|ORF2 37.7bits(86) 0.37 85825 86616 -1 ref|YP_195134.1|terminase large subunit gp17 64.3bits(155) 4e-09 88108 88785 -1 ref|NP_817653.1|gp64 43.1bits(100) 0.009 89599 89754 -1 ref|NP_818385.1|gp84 37.4bits(85) 0.48 90688 91626 1 ref|NP_777346.1|hypothetical protein 67.0bits(162) 6e-10 Prophage Finder Output Genome file: temp/brevibacteriumlc.txt Sequence Header: >Scaffold6 Genome size: 32780 Host's GC content: 62.24 Predicted Codon Position GC: 1st: 65.18 2nd: 43.50 3rd: 73.00 Prophage Finder Output Genome file: temp/brevibacteriumlc.txt Sequence Header: >Scaffold7 Genome size: 18227 Host's GC content: 62.92 Predicted Codon Position GC: 1st: 65.60 2nd: 43.69 3rd: 74.17 Prophage Finder Output Genome file: temp/brevibacteriumlc.txt Sequence Header: >Scaffold8 Genome size: 17737 Host's GC content: 57.06 Predicted Codon Position GC: 1st: 61.99 2nd: 42.11 3rd: 64.24 Prophage Finder Output Genome file: temp/brevibacteriumlc.txt Sequence Header: >Scaffold9 Genome size: 16586 Host's GC content: 64.01 Predicted Codon Position GC: 1st: 66.27 2nd: 43.98 3rd: 76.01 Prophage Finder Output Genome file: temp/brevibacteriumlc.txt Sequence Header: >Scaffold10 Genome size: 9422 Host's GC content: 56.25 Predicted Codon Position GC: 1st: 61.49 2nd: 41.89 3rd: 62.88 Prophage Finder Output Genome file: temp/brevibacteriumlc.txt Sequence Header: >Scaffold11 Genome size: 9038 Host's GC content: 55.33 Predicted Codon Position GC: 1st: 60.93 2nd: 41.64 3rd: 61.32 Prophage Finder Output Genome file: temp/brevibacteriumlc.txt Sequence Header: >Scaffold12 Genome size: 8698 Host's GC content: 49.26 Predicted Codon Position GC: 1st: 57.20 2nd: 40.00 3rd: 51.06 Prophage Finder Output Genome file: temp/brevibacteriumlc.txt Sequence Header: >Scaffold13 Genome size: 5350 Host's GC content: 59.07 Predicted Codon Position GC: 1st: 63.23 2nd: 42.65 3rd: 67.64 Prophage Finder Output Genome file: temp/brevibacteriumlc.txt Sequence Header: >Scaffold14 Genome size: 2154 Host's GC content: 62.58 Predicted Codon Position GC: 1st: 65.39 2nd: 43.60 3rd: 73.59