Genome file:  temp/brevibacteriumlc.txt
Sequence Header:  >Scaffold1

>PredictedProphage1-Hit1
RVVEALRDVLEQFKIDAAVTGFSRGPTVTRYEVELGAGTKVEKVTALSKNIAYAVASADVRILSPIPGKKAIGIEIPNSDRENVALGDVLRSKAARKTENSLVMGVGKDVEGGFVVADLSKMPHLLVAGATGAGKSSFVNSMITSIMMRATPDEVRMILVDPKRVELTIYEGIPHLITPIITNPKKAAEALEWVVREMDARYDDLANFGFKHINEFNKAVREGRVEVPAGSERVLQPYPYLLVVVDELADLMMVAPRDVEASIQRITQLARAAGIHLVLATQRPSVDVVTGLIKANVPSRLAFATSSLADSRVVLDQPGAEKLIGQGDALFLPMGAAKPMRVQGAWVNESEIEKVVDHVK
>PredictedProphage1-Hit2
ALDAALGQIDRNYGKGAIMRLGEGVREPIACIPTGSIALDIALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQKTGGIAAFIDAEHALDPEYAKKLGVDTDQLLVSQPDTGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKIAGALSQSKTTAIFINQLREKVGVFFGSPETTSGGKALKFYASVRIDVRRIETLKEGQDAVGNRTRAKIVKNKIAPPFKQAEFDIIYGQGISREGSLIDMGVDNGIIRKSGSWFTYDGDQLGQGKENVRNFLRDNPGLAEEIELKIK
>PredictedProphage1-Hit3
PRHRSRRAGTHRIRGRGRSLGQAPASAGNRSGRRCEDHSQRLAAHRARSRGHRTHRTPLQRSAARLPGHRTDHPPGPERRTQDPARADRVPCGGDVGTRLGRRGPQPPRTWPGRRQNRLTSDRIRPDPAVPGRKARQRRRPGTDDHQNPTVRTPAGHLVPQRPAHRLDRRHRGRP_GQCGQRPRSCGH
>PredictedProphage1-Hit4
VQVPVVGRIAAGGPILAEQEVDDVFSLPTQVVGSGDMFLLKVVGDSMIEAAICHDDWVVVRKQHTADNGQIVAALLDGEATVKTLKRKAGHQWLLPQNKDYEPIDGTYAQIMGLVVSV
>PredictedProphage1-Hit5
LTPRQRLVLETIERAVVTNGYPPSMREIGKAAGLASLSSVAHQLSQLERLGYVRRDPKRPRAIEVV
>PredictedProphage2-Hit1
RMEFELDDFQLEACAQLQDGKDVLVTAPTGAGKTLIAEFAVELARDEGKRVFYTTPIKALSNQKFNDLMDVHGVENVGLLTGDTSIRRDAPIIVMTTEVLRNMLYNDVAGLSDLGFVVLDEVHYLADRFRGPVWEEVIIHLPDRVQMVSLSATVSNVEEFGAWLSEVRGPTTVVSTSHRPVPLVNHVLVGHRMY
>PredictedProphage2-Hit2
VAAHHAGMIPQFKQLVEELFSQGIIKVVFATETLALGINMPARTVVLEKLVKFNGEAHVSITPGEYTQLTGRAGRRGIDQIGHAVVIWHPSFEVNEIAGLASNRSYALNSAFGPTYNMTANLLSRMSSAEAAKVLETS
>PredictedProphage2-Hit3
WSQSRLVGFDLETTGVDPATARIVTAAFVESAENARTWLADPGVEIPEPARAVHGITTEFAQANGAPVAEVVAELCTVLADLKAEGAVVVGHNIVYDLSVMSAEVKRHQPHIGLAALLPTIVDTFVLDKKVEQFRRGKRTLTETAKRWKVSLLDAHDAAADALAALDISRALAQSSEEIAQLTRDEIMAAQGEWKRDQAADLQSWLRRKGNAEAVVDGSWPM
>PredictedProphage2-Hit4
QMIRRFDSPRVVATMDADWRPAFRTAIMPEYKAARVKDAEAGTEIPPELDAQLPIMTDVLRAAGIPIAEVDGTEADDVIATMAAQSQTPVVIVSPDRDLLALIDAASDVSVLRPRKGGEWEAISQADLPEAYGVPDGTRYRELAAMRGDPSDGLPGAPGIGEKTAATLLANFGSLESII
>PredictedProphage2-Hit5
KTLVVIPTYNERLALPVTLSGLFENQPDVDVLVVDDGSPDGTGEWVDEQARTDPRLHVLHRSEKSGLGMAYIAGFEWALERDYEIICEFDADGSHRPLDLGQLLAVAQAGHADLVIGSRWVRGGAIVDWPRSRFFLSRGANIYVNAVMGLGVKDATAGFRAYSREVLQNLDL
>PredictedProphage2-Hit6
SGTCPMSYYGGGDGFDGRPTANGEIFDTNKLTAAHKTLPFGSQVKITNTANGKSVTVRINDRGPHHGSRCIDLS

Genome file:  temp/brevibacteriumlc.txt
Sequence Header:  >Scaffold2


Genome file:  temp/brevibacteriumlc.txt
Sequence Header:  >Scaffold3

>PredictedProphage1-Hit1
LVIAHRGYSAVAPENSLAAVDAARALDVDFIEVDTSTSADGVPVILHDPDLDRTTNRKGPVANLTAEELSFVDAGSWMGPGFTGVRIPTLAAVMRDIQHRGGELLLELKGEWSSGAVAQISELVVETGTADRMVVQSFNTETLAACRDMLPMVSRFLLRMVPRPEDIETARALGAVAINPSYKGFSMRRSVVTEIRDNDLGVFVWTADSMNEWRELLDAEVDGIITNH
>PredictedProphage1-Hit2
EPGDSNESPEKDEPVIGLGGKQYERERPPKPTSAPTPVGESIVDAEVIEDDESDDYDLVFGSGLEPASVDLNESSNTPGREHVVRAIRELHYGASAPLPMVKKQSKLLEVAFSGGVSDLATLEGDKVEDLGRDVADALGVLSDLLSAMATQPAPTFQAALTHSDTVGSIKKTMTNL
>PredictedProphage1-Hit3
LMDSEKAHYAIRRMARLLEVTKSGYYAWKKRRQTGPSKRARAQRSLDGQVAEIHADSDGVYGAPRVAAQLARQGVSADEKTVAASLRRQGLEGISPRRFRPVTTLPGVATHHIPDLVKRVWDRGELDAVWISDITYLRTWEGFVYLCVIRDGCSRRVLGWAMDSRQDSDLVERALRMAHTLREMVPGDVIFHADKGAQYTSAQLHQASIELGLKQSVGRTGVCWDNAMSESFWSSLKTEFFERRVWQTRAEVMREVARWIEVVYNRRRLHSALGMVPPVEFEEKFRA
>PredictedProphage1-Hit4
QRRSYTPQYRIEAANLVIDTGRSIAAVAKEIGVGEQTLGTWVKAEKDRRRVDGESTGPLNEDERAELARLRRENFDLKQDNEFLGKAAAFFASKPRN
>PredictedProphage1-Hit5
KYTDELKARAVELVMHAQADPDSANGAITRVANELGLSKETLRVWVRKHKDSGNATPTESVDLEAENRRLRAELAESRRANEILKKASAFFAAELDR

Genome file:  temp/brevibacteriumlc.txt
Sequence Header:  >Scaffold4

>PredictedProphage1-Hit1
G_CWDNAMSESFWSSLKSEFFDRRVWQTRAEVKREVARWIEIVYNRRRLHSALGMVPPVEFE
>PredictedProphage1-Hit2
YTPEYRIEAANLVISTGRSIAAVAKELGVGEQTLGTWVKAEKDRLRGEGESTGPLGEDERAELARLKRENFELKQDNEFLGKAAAFFA
>PredictedProphage1-Hit3
LGAAAREFARAGVPVFPCAPNGKRPLTHGGFHDATTDFSQVQAWWDQIPNANIGLPTGHPSGVVVVDVDLHEKVNGYDAINRAHDAGKLGHWEVVTRTPSGGAHLIYPATPATQQRSWQAARAGVDFRGDGGYIIVPPSHRHIDGQQHHY
>PredictedProphage1-Hit4
VITAACGTIGIALGAFWLSFTALADLARRSGIASSQAWVWPLLVDGLIVVATIAVVALDGRAGAWYPWGLLIAGALVSVAANAMHAVVAAEAAVPGLLASVIASVPPLVLLASTHLTVVLIR
>PredictedProphage1-Hit5
TWVATSPFGPRTHPITGEETLHTGSDFAAEDGTEILAAADGTVAEAQYTDSGGGIVVIDHQVDGQRLATAYIHMWEDGIHVQVGDEITAGQHIADVGSSGQSTGAHLHFEVREGGPDGDYTDPAAWL
>PredictedProphage1-Hit6
EHPLGRACDVTFGNPIGQMPTPDQLEAGWDFTHWMQDHAEDLGVEYLIWQGKIWSVGSDKDGWRDYDGGGMHSPEDITGGHYDHVHITVK
>PredictedProphage2-Hit1
RARYSANLDALGLARVLDEEQRPATEQEQAVLAGWSSWGALPEVFDPRNDQWAEQREELRALLSEQEWDDAARTTLNAHYTSPLVAPELWRAMTSLGFTGGEVLEPGSGSGTFIGLAPPDARMTGVELDPVTASISRHLYPHADIRAESFAETRPAHGQFDAVIGNVPFGKIVLHDPVDNPTRQSIHNHFILKSLRATRPGGLVTVLSSRYTLDAQNPGARREMALLADLVGAVRLPTGTHQRTAGTEAITDVLIFRRRDEDQPPADDLWETVTPVTLDGQEIKINGYFDTHPEHVLGTMSISQGMYGAESLRADGDLDHVAEDLRTTLEQITFTARRKGQTMTARTTPVGQAPAVAATGSAPRTWDGTILATDDGGFATINGGSLEPLKVPKNATREMTALLGLRDSATHLLKLEAATADDTEEITTARESLRRDYQKYLGTFGPLNRFSWRRTGRTNDAGEETHARIMPTPLRLLRSDPFGALVTALEEFDDSTQTASPATILSRRVVAPRAEVQGADTPADAVALSLDRTGGIDLPLIADMLGMDETETRQALTGLVYTDPVTDALVHAPEYLSGDVRTKLAQAKDRAAEDPDFQTNVEALTDVQPEDLGVEDITARFGAVWISPAIHQQFLAEILRTEQVRVENPLPGMWDVRGGRSGLQATSEWGTERRPAPAIAQALMEQKAIIVKDEIEGPDGKPQMVLNATETTAAQEKAETMQARFAEWVWEDPERAKGLVDEYNTRFNNIVLRDYSMAGEYLSLPGMAETFTPRPHQRAAVARMIAEPSTGLFHEVGAGKTAEAIMGAMEMRRMGLISKPLIVIPNHMLAQFSSEWLQIYPQARILAASSKDVTADKRRSFVARAAANDWDGILLTQSAFSKIPLRQSTQQDYIRGQVVDLRRVLENAEAGDAMSVKRIQRKLVNLENKLKERLDTSRDVGVCFEDTGIDYLVIDELHMYKNLATESNISDAAIEGSGRASDLDMKLTYLRDQGKDRVVTGMTATPISNSITEAFVMQKYLRPDLLDTAGVQAFDAWAATFGETSTDMEMSPTGSFRLKTRFSRFTNVPEMLRMWSTFADVKTAEDLQLPVPDIAERDDGSRAPSTEVVQPTAELEDFVADLGDRAEKVAARLVTPREDNMLTISTDGRKAALDIRLVLDDQPTGPTKVDVAADTIARVWEQTRDNEYLDPATGQPAAARGALQLVFADIGTPNPDQWNAYDELAAQLVLRGMPGESIRFIHEAKSDIDKAQLFAAARAGHVAVLIGSTQKMGVGTNIQARAVALYHMDCPWRPSDIAQREGRILRQGNQNPEVGVVRLVTEKSFDAYMWQAVERKAKFISQIMRGSLDVREVEEIDSAELSAAEAKAISSGNPLLLEHSTIQAEVAKLHRLERAHSRNESMLEHTRLRAREDITRHEEEITGLEQAAGQVTDTSGENFRITLAGHSYDSRTDAGHALAQWAHREGVTWAPKHIGRDYGTLGQISGFDITVATVPSLGDEPSVEIALADVPRSATVVGRETFLAGGAGVIQRIENRVSGIPTLLERARSDLAEAEQSLAEAQERIGKPF
>PredictedProphage2-Hit2
MKTGTSVSGFIATDPKLTYGQQGVARFYARMGIEHYRREEDGTFTQLEPSFHDLVVYRKSAEHAAEAFAKGDRFVADGYVRPYTYEREGRQVGGEEFVARKIGHDAARSTYTVDRTPRDEGLTQEQVTAQRAQAFEAPERPAQ
>PredictedProphage2-Hit3
SLANAADQLGISVKTLRRRISDGTIHGYRVGRLIRVDPEEL
>PredictedProphage2-Hit4
REAWGSLRKLPSGRWQARYPGPDGETHTARTEDDKALTFQTKTDARTWLSSVHTKIALGTWEIPEVQATRRRAEAEAEAARTIGFTEYADRWIEMIRTQPNRSGKMRSEGTIRSYKGKVNGYLIPEFDDTPIRDIDKERIRLMTDKLDKIPSPLNPKSKFNGVTRPVLIVLMMILRQAARDGIIAKEPDVPMPRQKPVRHDADHDPGEDVATPAQVEALYDAMPKRWAIAVLLAAWCQLRRGECLGLQRRDIEWRPDGSAILHVRRQLNANTGDFTDPKSEAGKRSLSVPRIMRDRLWEHLRDYVAKEAKAPVIAASVQGSVPLSNTRWWNVWSEAKDAVDVIDSGFRFHDLRHTGLTIFAQEGATLAELMRRGGHSDMRVVLRYQHATMARDRELADRMS
>PredictedProphage2-Hit5
DAINWNRVVDPVDDDVWDRLTGNFWLPEKVPLSNDIPSWATLTEEEKTLTMRVFTGLTLLDTIQGTVGAISLIPDAVTPHEEAVMTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSRENTYLQSKADIILSYYRGDDPLKRKVASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLESQSEERKQELKDYTMNLMFELYENEVAYTHDLYDSVGLAEDCKMFLHYNANKALMNLGYEAMFPKEVTEVNPAILAALSPNSDENHDFFSGSGSSYVIGKAENTEDDDWDF
>PredictedProphage2-Hit6
LNAMLNLYDQDGRIQFERDKQAARQYFLQHVNNNTVFFHDLKEKLDYLVEKEYYEPEVLDQYSFDFIEELSKHAYSAKFRFQTFLGAFKFYTSYTLKTFDGKRYLERFEDRVVMVALFLARGDETLAKQLVDEIIHGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIRESGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYKFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEDMYLFSPYDVERVYGMPFSDVNVTEKYEEMVDNAAIKKNKINAREFFQTLAEIQFESGYPYVMFEDTVNKANPIDGKIIMSNLCSEILQVSEPSKYDSDLGYDVVGKDISCNLGSLNIALTMDSTDFGQTIETAIRGLTAVAETSDIQSVPSIARGNDMSHAIGLGQMNLHGYLAREHIYYGSDEGLDFTNMYFYTVAYHCVRASMEIAKERKTAFAGFERSKYASGEYFDKYTDEVWEPRTRRVAEMFTEAGVHIPTQDDWRELKAAVAEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKVEIRKEGKIGRVYYPAPFMDNDNLKYYQDAYEIGYEKIIDTYAEATKHVDQGLSLTLFFMDTATTRDINKAQIYAWRKGIKTIYYIRLRQLAL
>PredictedProphage2-Hit7
LLVYYSSSSEYTDRFVSKLRHPSRRLPLLTKDETLAIDEPFVLVTPTYGAGPNRGAVPKQVIKFLNIESNRRHLVGVIGAGNTNFGEEYCRAAHKVAAKCNVPVLYRVELLGTPEDVEAV
>PredictedProphage2-Hit8
ITVYTKPSCVQCNATYRALDAKGLKYKSVDLSVDENALDVVKAMGYMQAPVVVTDNDHWSGFRPDKIATLAGEQ
>PredictedProphage3-Hit1
VDSLVVIIYLAAMVGFGIWGR_KAKNQDDFLVAGRRLGGWLYTGTMSAVVLGGASTIGGVGLGYTSGLSGMWLVFSIGLGIILLSLFFAPKIQKLEIYTVSQMLELRYGKGSRLVSGTIMTAYGLMISTTSTVAYATIFHALFDLNKFWSVLIGGGIVILYSMLGGMWSITLTDFVQFFIQTIGI
>PredictedProphage3-Hit2
GDGELANPAKGYPTTSPFGYRIHPITGAKKLHSGTDFGVPCGTPIRAAGDGIVVISGWTGGYGNRVVISHGKIKGDSIASTYNHNTDLKVRDGQKVKKGQVISDSGTTGASTGCHLHFEIMKNG
>PredictedProphage3-Hit3
DLRIDVYRSSGPGGQSVNTTDSAVRITHAPTGVVVSMQNEKSQIQNREAAMR
>PredictedProphage3-Hit4
FHSVRLDPDHVEGDMLGAAYEYLLREFAEASGKKAGEFFTPRHVVHLLVKILQPQSGDSIIDPACGSAGMLVETVNEVKNSGGDP
>PredictedProphage3-Hit5
KGLIYHTQGSGKTLAMVFAAGRLVRDPQMCNPTIVVVADRVQLVRQMWDQFRTTDMPRIRVPDSAGELHRLLKQDTRGLIFTTVHKFSNAGVLNDRENIVVMVDEAHRTQEGDLGAAMRRALPNANLFAFTGTPIADEDRNTFATFGESEDPGSALHTYGTDESIRDGMTVPIHVAPRKVEF

Genome file:  temp/brevibacteriumlc.txt
Sequence Header:  >Scaffold5

>PredictedProphage1-Hit1
FEEAFIMALYTTTAGVSAISPDQIEQLIVLPVQSNSIAFQAATLVTTNATETRIPRVTDDPSAAWTAEGDEIGTSDPKIDDIAVLPKKLAGLVVVSNETVADTNPAADSIVGDGLTRDIARKVDAAFFGSNSAAPTLQPEGL
>PredictedProphage1-Hit2
GLSPENGEKSEQGAISDPTPGQEPGNLPGNGEVDGEDNLAELAPEKLAGMVRDKRKAEANVRGKLRDAEAERDKLAEAVTGFRRQAFAATASASKVQESAMDDVLGAVGLDNVLGDDGTVDAEKVQESLQAL
>PredictedProphage1-Hit3
ALDPVRFTQGLGFDPELWQERLLRTQEARVLVLCARQVGKTTATAYKALHAAMFNPGRDVLIVSPSQRQSDEMLRRVASLYRGMKEAPKLSRSNTSEMGLSNGSRVVSLPGSEGGIRGFAGVKLLILDEASRVDDDVFASVLPMVASDGQMVALSTPWGRRGWFHELHQETRNGWERHKVTVYESDQYTPPRIAEVKASLGSFVFSSDYLCEFGDTDSQLFSTENVRAAFSPGIQPLEVV_MACFTVGLDLGSAADFSALVVVE
>PredictedProphage1-Hit4
DPEPVVWAWTDGDNGRIPSGSLSIAAGREGTGKSSFGIWMAAQISRGVLPGAYYGTPKRILYVAFEDSWKYTLVPRLIAAGADLGSIGRLDIVSTTDEMLTLSLPDDNIILEQQIIDNDVALVVVDPLMSVMGQKIDTHRNREVRTALDPLARIADTTGSIFLGIAHFNKGAGTDAASLISGSGAFKDVPRSVFGFAKDEDSDDGTRVMTQVKNSLGMDSLPSLEY
>PredictedProphage1-Hit5
LTNQDLADRLQMPEQTLAIWRMKGYGPRFFKAGRYVRYRLADVLAWELEQLE
>PredictedProphage1-Hit6
RLHELGKAWLIDAKQTDLARQSLQEYEQVLNKTIVPGIGQLRVREATVGRLDKFLKDIAGTHPAKAKQTKVVLSHMLGLAVRLDAIPHNPVTETRLPARKQAEPRALTEDEQEALRRGIYKWMHQKGTSGPKRAPDLLDIVDMLLATGMRIGELCALRWDDVDLGSEHPSILISGTVIRVTGQGLTRQAHTKTSSRHLRVYLPPKAVAILLNRSTDTDEDAPANLWNMVFPSSTGTLRDPYNLRRQFRDARVAAGFDWVTPHTFRKTVTTNLQRVRGLEAASEQAGHSDTAVTSRHYVQPTHEAPVENAEVLD

Genome file:  temp/brevibacteriumlc.txt
Sequence Header:  >Scaffold6


Genome file:  temp/brevibacteriumlc.txt
Sequence Header:  >Scaffold7


Genome file:  temp/brevibacteriumlc.txt
Sequence Header:  >Scaffold8


Genome file:  temp/brevibacteriumlc.txt
Sequence Header:  >Scaffold9


Genome file:  temp/brevibacteriumlc.txt
Sequence Header:  >Scaffold10


Genome file:  temp/brevibacteriumlc.txt
Sequence Header:  >Scaffold11


Genome file:  temp/brevibacteriumlc.txt
Sequence Header:  >Scaffold12


Genome file:  temp/brevibacteriumlc.txt
Sequence Header:  >Scaffold13


Genome file:  temp/brevibacteriumlc.txt
Sequence Header:  >Scaffold14