BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Scaffold1 (1,811,970 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817564.1|gp117 404 e-110 ref|NP_818250.1|gp199 389 e-106 ref|NP_818503.1|gp203 348 8e-94 ref|NP_932363.1|hypothetical protein 309 5e-82 ref|NP_818618.1|gp80 270 3e-70 ref|NP_536395.1|ISBt3 transposase subunit protein 222 6e-56 ref|NP_859396.1|hypothetical protein 220 3e-55 ref|NP_046685.1|putative DNA polymerase 211 1e-52 ref|NP_945090.1|gp59 171 2e-40 ref|YP_024516.1|putative DNA polymerase 152 6e-35 ref|NP_852498.1|DNA polymerase I 149 5e-34 ref|NP_944043.1|thymidine kinase 144 3e-32 ref|NP_861801.1|Tk thymidine kinase 142 8e-32 ref|NP_049719.1|Tk thymidine kinase 140 3e-31 ref|NP_569753.1|putative tape-measure protein 140 4e-31 ref|NP_597931.1|PhoH-like protein 138 1e-30 ref|NP_046670.1|similar to Escherichia coli YedG 135 1e-29 ref|YP_006950.1|DNA polymerase 135 1e-29 ref|YP_006926.1|putative PhoH-like protein 132 9e-29 ref|NP_891658.1|thymidine kinase 127 3e-27 ref|NP_542563.1|RTCB-like protein 126 6e-27 ref|NP_047129.1|putative tail tape measure protein 126 6e-27 ref|NP_932455.1|thymidine kinase 126 6e-27 ref|NP_817633.1|gp44 125 1e-26 ref|NP_050655.1|Gin 124 2e-26 ref|NP_899436.1|thymidine kinase 118 2e-24 ref|NP_818252.1|gp201 116 5e-24 ref|NP_044960.1|unknown 115 1e-23 ref|NP_835691.1|similar to DNA helicase 114 2e-23 ref|NP_862888.1|PblA 114 2e-23 ref|NP_046860.1|DNA polymerase 114 2e-23 ref|NP_958252.1|hypothetical protein 114 2e-23 ref|YP_006944.1|NAD-dependent DNA ligase, subunit A 114 3e-23 ref|YP_164694.1|orf59 113 4e-23 ref|NP_112664.1|INT 113 5e-23 ref|YP_006499.1|Cin 112 7e-23 ref|YP_025041.1|putative transposase B 110 3e-22 ref|NP_899539.1|PhoH domain protein 110 5e-22 ref|NP_817990.1|gp17 109 6e-22 ref|YP_024521.1|putative DNA repair protein 108 1e-21 ref|YP_164688.1|recombinase A 107 4e-21 ref|NP_690687.1|structural protein 106 5e-21 ref|NP_795678.1|putative helicase 106 7e-21 ref|NP_818041.1|gp68 105 1e-20 ref|NP_817403.1|gp65 105 1e-20 ref|NP_665964.1|putative plasmid partitioning protein Soj 104 3e-20 ref|NP_818603.1|gp65 103 6e-20 ref|NP_899293.1|topoisomerase II large subunit 103 6e-20 ref|NP_046572.1|ABC transporter 102 7e-20 ref|NP_817615.1|gp26 101 2e-19 ref|NP_861955.1|gp52 topoisomerase II, medium subunit 100 5e-19 ref|NP_039708.1|predicted 66.2Kd protein 99 8e-19 ref|NP_049875.1|gp52 topoisomerase II, medium subunit 98 2e-18 ref|NP_852599.1|hypothetical protein 96 7e-18 ref|NP_075308.1|gp41 96 9e-18 ref|NP_463492.1|putative integrase 93 6e-17 ref|NP_818571.1|gp33 92 1e-16 ref|NP_523322.1|gene 5B protein 92 1e-16 ref|NP_523320.1|DNA polymerase 92 1e-16 ref|NP_848283.1|DNA polymerase 92 1e-16 ref|NP_041982.1|DNA polymerase 92 1e-16 ref|NP_803295.1|tape measure protein 91 2e-16 ref|NP_932589.1|hypothetical protein 91 3e-16 ref|YP_164331.1|hypothetical protein 90 5e-16 ref|NP_958255.1|hypothetical protein 90 5e-16 ref|NP_943883.1|topoisomerase II large subunit 89 1e-15 ref|NP_052094.1|5B protein 89 1e-15 ref|NP_052093.1|DNA polymerase 89 1e-15 ref|NP_899529.1|topoisomerase II small subunit 88 2e-15 ref|NP_958229.1|gene 55 protein 88 2e-15 ref|NP_108725.1|unknown 87 3e-15 ref|NP_858986.1|DNA polymerase lacking N-terminal exonuclease do... 87 6e-15 ref|YP_024841.1|Pas55 86 7e-15 ref|NP_075289.1|gp22 86 9e-15 ref|YP_195230.1|PhoH 86 9e-15 ref|NP_058491.1|dUTPase 84 3e-14 ref|NP_803332.1|helicase 84 4e-14 ref|NP_899269.1|deoxyuridine 5'-triphosphate nucleotidohydrolase 84 4e-14 ref|NP_112708.1|TMP 84 5e-14 ref|YP_024986.1|DNA polymerase I 82 1e-13 ref|NP_803328.1|dUTPase 82 1e-13 ref|NP_803278.1|dUTPase 82 1e-13 ref|NP_958659.1|77ORF021 82 1e-13 ref|YP_024429.1|DNA polymerase I 82 1e-13 ref|NP_075491.1|phi PVL ORF 53 analogue 82 1e-13 ref|NP_944225.1|gp52 topoisomerase II medium subunit 82 2e-13 ref|NP_046569.1|IMPB 80 5e-13 ref|NP_569784.1|hypothetical protein 79 9e-13 ref|YP_195169.1|RecA-like recombination protein 79 9e-13 ref|NP_690785.1|site-specific recombinase for integration and ex... 79 9e-13 ref|NP_932362.1|topoisomerase II large subunit 79 9e-13 ref|NP_663636.1|unknown 79 1e-12 ref|NP_943888.1|hypothetical protein 79 1e-12 ref|NP_835555.1|hypothetical protein, similar to scaffolding pro... 79 1e-12 ref|NP_817502.1|gp53 79 1e-12 ref|NP_817637.1|gp48 79 1e-12 ref|NP_861694.1|gp60plus39 large subunit topoisomerase II 79 1e-12 ref|YP_195193.1|hypothetical protein 79 1e-12 ref|NP_047961.1|gp16 79 1e-12 ref|NP_445672.1|putative helicase 78 2e-12 ref|NP_891840.1|topoisomerase medium subunit 78 2e-12 ref|NP_061531.1|integrase 77 3e-12 ref|NP_817552.1|gp103 77 3e-12 ref|NP_039712.1|predicted 27.8Kd protein 77 4e-12 ref|NP_932596.1|topoisomerase II medium subunit 77 4e-12 ref|NP_958716.1|Bbp47 77 6e-12 ref|NP_996608.1|DEAD box helicase 77 6e-12 ref|NP_996656.1|DEAD box helicase 77 6e-12 ref|NP_817947.1|gp96 76 7e-12 ref|NP_958605.1|77ORF015 76 7e-12 ref|NP_064753.1|RP DNA pol 74 3e-11 ref|NP_892074.1|partitioning protein SpyA 74 4e-11 ref|NP_891577.1|topoisomerase II large subunit 74 5e-11 ref|YP_006919.1|putative RNaseH ribonuclease 74 5e-11 ref|NP_046863.1|gp48 73 6e-11 ref|NP_510947.1|similar to phage bIL170 l16 73 8e-11 ref|NP_049656.2|UvsX RecA-like recombination protein 72 1e-10 ref|NP_795404.1|head maturation protease 72 1e-10 ref|YP_006605.1|Gp25 72 1e-10 ref|NP_813726.1|gp11 72 2e-10 ref|NP_046923.1|gp28 72 2e-10 ref|NP_858955.1|protease of the ClpP family 71 2e-10 ref|NP_510993.1|tail tape measure protein 71 2e-10 ref|YP_006959.1|putative deoxyUTP pyrophosphatase 71 2e-10 ref|YP_164394.1|DEAD box family helicase 71 3e-10 ref|NP_445687.1|putative helicase 70 5e-10 ref|YP_006528.1|ParA 70 5e-10 ref|NP_877458.1|putative DNA directed DNA polymerase 70 7e-10 ref|NP_046717.1|putative dUTPase 69 1e-09 ref|NP_859398.1|hypothetical protein 68 2e-09 ref|NP_958615.1|77ORF001 68 2e-09 ref|NP_047956.2|gp11 68 3e-09 ref|NP_852553.1|hypothetical protein 68 3e-09 ref|NP_051002.1|hypothetical protein 67 3e-09 ref|NP_049621.1|gp39 topoisomerase II, large subunit, N-terminal... 67 5e-09 ref|NP_640280.1|DNA polymerase 67 6e-09 ref|YP_024988.1|superfamily II DNA 67 6e-09 ref|YP_024431.1|superfamily II DNA 67 6e-09 ref|NP_835564.1|hypothetical protein 67 6e-09 ref|NP_061640.1|phi PVL ORF 15 and 16 homologue 67 6e-09 ref|NP_817817.1|gp56 67 6e-09 ref|NP_612994.1|hypothetical protein 66 8e-09 ref|NP_049482.1|serine 66 8e-09 ref|NP_803396.1|tail length tape measure protein 66 1e-08 ref|NP_058454.1|orf 16 66 1e-08 ref|NP_076801.1|integrase 66 1e-08 ref|NP_076663.1|dUTPase 66 1e-08 ref|NP_795465.1|putative ClpP protease ATP-dependent protease pr... 65 1e-08 ref|NP_108702.1|dUTPase 65 1e-08 ref|NP_996693.1|dUTPase 65 1e-08 ref|NP_076600.1|dUTPase 65 1e-08 ref|YP_024453.1|putative PhoH-related protein 65 2e-08 ref|NP_899256.1|UvsX 65 2e-08 ref|NP_818577.1|gp39 64 3e-08 ref|NP_758949.1|ORF58 64 4e-08 ref|NP_852561.1|DNA integration 64 4e-08 ref|NP_813764.1|putative DNA polymerase 64 5e-08 ref|NP_663658.1|putative dUTPase 64 5e-08 ref|NP_112684.1|DUT 64 5e-08 ref|NP_695048.1|dUTPase 64 5e-08 ref|NP_817811.1|gp50 62 1e-07 ref|NP_944246.1|putative single-strand DNA binding protein 62 1e-07 ref|NP_061501.1|ClpP protease 62 1e-07 ref|NP_943831.1|gp53 62 1e-07 ref|YP_003936.1|hypothetical protein 62 1e-07 ref|NP_852540.1|hypothetical protein 62 1e-07 ref|YP_077209.1|thymidylate synthase 61 2e-07 ref|NP_817400.1|gp62 61 2e-07 ref|NP_943839.1|gp61 61 3e-07 ref|NP_817551.1|gp102 61 3e-07 ref|NP_046887.1|gp69 60 4e-07 ref|NP_817352.1|gp14 60 4e-07 ref|NP_861734.1|UvsX RecA-like recombination protein 60 6e-07 ref|NP_818168.1|gp95 60 7e-07 ref|NP_839925.1|putative ClpP protease 60 7e-07 ref|NP_076678.1|protease 60 7e-07 ref|NP_818038.1|gp65 59 9e-07 ref|NP_891595.1|UvsX 59 9e-07 ref|NP_795486.1|hypothetical protein 59 1e-06 ref|NP_899623.1|UvsW 59 1e-06 ref|NP_049935.1|minor tail protein 59 2e-06 ref|NP_862840.1|gp1 59 2e-06 ref|YP_006485.1|Ssb 59 2e-06 ref|NP_050150.1|ClpP-like protease 58 2e-06 ref|NP_817544.1|gp95 58 3e-06 ref|NP_038326.1|ORF25 57 4e-06 ref|NP_775225.1|DNA polymerase1 57 4e-06 ref|NP_818463.1|gp163 57 5e-06 ref|NP_116498.1|putative ATP-dependent ClpP protein 57 5e-06 ref|NP_795429.1|putative integrase 57 6e-06 ref|NP_803721.1|ORF155 57 6e-06 ref|NP_958557.1|putative superinfection immunity protein 57 6e-06 ref|YP_024948.1|gp28 57 6e-06 ref|NP_945240.1|integrase 57 6e-06 ref|YP_024499.1|putative helicase 56 8e-06 ref|YP_006958.1|flap endonuclease 56 8e-06 ref|NP_944130.1|UvsW RNA-DNA and DNA-DNA helicase 56 8e-06 ref|NP_047934.1|gp43 56 1e-05 ref|NP_049395.1|putative scaffolding protein 55 1e-05 ref|NP_795616.1|putative helicase 55 1e-05 ref|NP_795446.1|putative DEAD box family helicase 55 1e-05 ref|NP_112719.1|ORF56 55 1e-05 ref|NP_543053.1|putative integrase 55 1e-05 ref|NP_945016.1|unknown 55 1e-05 ref|NP_945015.1|unknown 55 1e-05 ref|NP_943894.1|UvsX 55 1e-05 ref|YP_164279.1|single-stranded DNA-binding protein 55 2e-05 ref|NP_049978.1|putative minor tail protein 54 4e-05 ref|NP_050128.1|putative DEAH-family helicase 54 4e-05 ref|NP_049970.1|Predicted clp-protease 54 5e-05 ref|NP_665963.1|putative site specific recombinase Int2 53 7e-05 ref|NP_039733.1|predicted 33.2Kd protein 53 7e-05 ref|NP_777346.1|hypothetical protein 53 7e-05 ref|YP_024485.1|hypothetical protein 52 1e-04 ref|NP_803346.1|tail fiber protein 52 1e-04 ref|NP_958203.1|gene 27 protein 52 1e-04 ref|NP_536628.1|Int 52 1e-04 ref|NP_076752.1|integrase 52 1e-04 ref|NP_075503.1|protease 52 2e-04 ref|NP_803338.1|scaffolding protease 52 2e-04 ref|NP_046874.1|putative DNA primase 52 2e-04 ref|NP_899461.1|PnuC 52 2e-04 ref|NP_818251.1|gp200 52 2e-04 ref|YP_025038.1|putative minor tail protein 52 2e-04 ref|YP_077256.1|group I glycosyltransferase 51 3e-04 ref|NP_075512.2|hypothetical protein 51 3e-04 ref|YP_024952.1|putative DNA polymerase protein 51 3e-04 ref|NP_813744.2|integrase 51 3e-04 ref|NP_813702.1|gp43 51 3e-04 ref|NP_817661.1|gp72 50 4e-04 ref|NP_542556.1|putative phage C31 protein gp16-like protein 50 6e-04 ref|NP_852555.1|Site-specific recombinase 50 6e-04 ref|NP_958623.1|77ORF007 50 6e-04 ref|NP_039722.1|predicted 14.5Kd protein 50 7e-04 ref|NP_542557.1|deaminase protein deoxycytidine triphosphate-lik... 50 7e-04 ref|NP_052288.1|hypothetical protein 50 7e-04 ref|NP_945089.1|gp58 50 7e-04 ref|NP_695088.1|putative helicase 49 0.001 ref|NP_049999.1|putative helicase 49 0.001 ref|NP_049952.1|putative helicase 49 0.001 ref|NP_056709.1|putative helicase 49 0.001 ref|NP_818239.1|gp188 49 0.001 ref|NP_996715.1|putative tape measure protein 49 0.001 ref|NP_038334.1|ORF33 49 0.001 ref|NP_075464.1|integrase 49 0.001 ref|NP_803307.1|integrase 49 0.001 ref|NP_058467.1|integrase 49 0.001 ref|NP_695070.1|putative tape-measure protein 49 0.001 ref|NP_570363.1|unknown 49 0.002 ref|NP_835660.1|similar to thymidine kinase 49 0.002 ref|NP_932529.1|RNA-DNA and DNA-DNA helicase ATPase 49 0.002 ref|NP_051006.1|P45 49 0.002 ref|NP_150133.1|integrase 48 0.002 ref|NP_599056.1|bactoprenol glucosyltransferase 48 0.002 ref|NP_061549.1|Orf53 48 0.002 ref|NP_818206.1|gp133 48 0.002 ref|NP_818164.1|gp91 48 0.002 ref|NP_996722.1|lysin 48 0.002 ref|NP_463477.1|putative tape-measure protein 48 0.002 ref|NP_049421.1|putative helicase 48 0.003 ref|NP_044832.1|hypothetical protein 48 0.003 ref|YP_003955.1|hypothetical protein 48 0.003 ref|NP_818386.1|gp85 47 0.004 ref|NP_049403.2|putative tail component protein 47 0.005 ref|YP_164758.1|orf123 47 0.005 ref|NP_958506.1|putative integrase 47 0.005 ref|NP_853574.1|gp14 47 0.005 ref|NP_536396.1|ISBt3 transposase subunit protein 47 0.005 ref|NP_046877.1|putative non-heme haloperoxidase 46 0.008 ref|NP_817623.1|gp34 46 0.008 ref|NP_511031.1|helicase 46 0.008 ref|NP_690702.1|amidase 46 0.008 ref|NP_720276.1|GtrB 46 0.011 ref|YP_006358.1|GtrB 46 0.011 ref|NP_813758.1|putative lysozyme 46 0.011 ref|NP_059582.1|O-antigen conversion protein 46 0.011 ref|NP_046786.1|Int 46 0.011 ref|YP_024873.1|nudix hydrolase motif containing protein 46 0.011 ref|NP_878228.1|Int 46 0.011 ref|NP_695158.1|minor capsid protein 46 0.011 ref|NP_852574.1|Collagen triple helix repeat protein 46 0.011 ref|NP_839878.1|Int 46 0.011 ref|NP_932523.1|hypothetical protein 46 0.011 ref|NP_039690.1|predicted 86.4kd protein; 52Kd observed 45 0.014 ref|NP_663692.1|putative lysin 45 0.014 ref|NP_958556.1|putative integrase 45 0.014 ref|NP_049796.1|UvsW RNA-DNA and DNA-DNA helicase, ATPase 45 0.014 ref|NP_052084.1|N-acetylmuramoyl-L-alanine amidase 45 0.014 ref|NP_818335.1|gp34 45 0.018 ref|NP_052278.1|Int 45 0.018 ref|NP_536414.1|putative PAPS reductase 45 0.018 ref|NP_040731.1|morphogenesis protein A 45 0.018 ref|NP_112716.1|LYS 45 0.024 ref|YP_164721.1|orf86 45 0.024 ref|NP_050109.1|integrase 45 0.024 ref|NP_958230.1|gene 56 protein 45 0.024 ref|NP_861886.1|UvsW RNA-DNA and DNA-DNA helicase, ATPase 45 0.024 ref|NP_795675.1|putative DNA polymerase A domain 44 0.031 ref|NP_680502.1|integrase 44 0.031 ref|NP_944235.1|putative phage recombinase 44 0.031 ref|NP_958267.1|hypothetical protein 44 0.031 ref|NP_108682.1|cI2009 44 0.031 ref|YP_006952.1|putative ATP-dependent helicase 44 0.031 ref|NP_695031.1|Repressor 44 0.031 ref|NP_047971.2|gp26 44 0.031 ref|NP_996677.1|phage repressor 44 0.031 ref|NP_076635.1|integrase 44 0.031 ref|NP_859328.1|hypothetical protein 44 0.041 ref|NP_612960.1|hypothetical protein 44 0.041 ref|NP_859162.1|hypothetical protein 44 0.041 ref|NP_817998.1|gp25 44 0.041 ref|NP_116545.1|putative dUTPase 44 0.041 ref|NP_116527.1|cI repressor 44 0.041 ref|NP_049618.1|gp60 topoisomerase II, large subunit, C-terminal... 44 0.041 ref|NP_050500.1|integrase 44 0.041 ref|NP_108734.1|lysin 44 0.041 ref|NP_523313.1|N-acetylmuramoyl-L-alanine amidase 44 0.041 ref|NP_049461.1|integrase 44 0.041 ref|NP_438114.1|integrase-like protein 44 0.053 ref|NP_795541.1|putative integrase 44 0.053 ref|NP_818230.1|gp179 44 0.053 ref|NP_663635.1|putative integrase 44 0.053 ref|NP_958084.1|gp27 44 0.053 ref|NP_076698.1|repressor 44 0.053 ref|NP_795660.1|putative integrase 43 0.070 ref|NP_795646.1|putative platlet-binding protein, minor tail fib... 43 0.070 ref|NP_818438.1|gp139 43 0.070 ref|NP_046584.1|putative transglycosylase 43 0.070 ref|YP_195262.1|hypothetical protein 43 0.070 ref|YP_195242.1|hypothetical protein 43 0.070 ref|NP_858984.1|5'-exonuclease similar to N-terminal domains of ... 43 0.091 ref|NP_542342.1|unknown 43 0.091 ref|NP_050160.1|hypothetical protein 43 0.091 ref|NP_612851.1|putative integrase 43 0.091 ref|NP_076780.1|integrase 43 0.091 ref|YP_024839.1|Pas53 43 0.091 ref|YP_024813.1|Pas27 43 0.091 ref|NP_817647.1|gp58 42 0.12 ref|NP_690787.1|immunity repressor 42 0.12 ref|NP_076746.1|tail protein 42 0.12 ref|NP_795697.1|putative tail protein 42 0.16 ref|NP_536807.1|integrase 42 0.16 ref|NP_043466.1|integrase 42 0.16 ref|YP_006949.1|putative DNA replication primase 42 0.16 ref|YP_024980.1|major tail subunit 42 0.20 ref|NP_803812.1|ORF246 42 0.20 ref|NP_818403.1|gp105 42 0.20 ref|NP_075329.1|gp62 42 0.20 ref|NP_848277.1|lysozyme 41 0.27 ref|NP_150175.1|putative minor tail protein 41 0.27 ref|YP_024506.1|putative primase 41 0.27 ref|NP_041973.1|lysozyme 41 0.27 ref|NP_958209.1|gene 33 protein 41 0.27 ref|YP_025047.1|putative integrase 41 0.27 ref|NP_795396.1|site-specific recombinase 41 0.35 ref|NP_835517.1|integrase 41 0.35 ref|NP_803356.1|integrase 41 0.35 ref|NP_690779.1|ORF46 41 0.35 ref|NP_510895.1|similar to phage phi 11 integrase 41 0.35 ref|NP_037720.1|integrase 41 0.35 ref|NP_690647.1|morphogenesis protein 41 0.35 ref|NP_795489.1|putative integrase 40 0.45 ref|NP_061565.1|cI repressor protein 40 0.45 ref|NP_817384.1|gp46 40 0.45 ref|NP_510985.1|Clp protease 40 0.45 ref|NP_543074.1|hypothetical protein 40 0.45 ref|NP_943752.1|putative protein 6 40 0.45 >ref|NP_817564.1|gp117 Length = 320 Score = 404 bits (1037), Expect = e-110 Identities = 197/317 (62%), Positives = 253/317 (79%), Gaps = 1/317 (0%) Frame = +1 Query: 301627 ALDAALGQIDRNYGKGAIMRLGEGVREPIACIPTGSIALDIALGIGGLPRGRVVEIYGPE 301806 +L AL ++D+ +G G+ M+LG+ + + IPTGSIALD ALGIGG PRGRVVEIYGPE Sbjct: 2 SLKEALAEVDKRFGAGSAMKLGDKP-QTVDVIPTGSIALDGALGIGGYPRGRVVEIYGPE 60 Query: 301807 SSGKTTVALHAVANAQKTGGIAAFIDAEHALDPEYAKKLGVDTDQLLVSQPDTGEQALEI 301986 SSGK+T+ LHAVANAQK GG AA+IDAEH+LDPEYAK LGVD D L+V QPDTGEQALEI Sbjct: 61 SSGKSTLCLHAVANAQKAGGNAAYIDAEHSLDPEYAKALGVDLDNLVVVQPDTGEQALEI 120 Query: 301987 ADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKIAGALSQSKTT 302166 D+L++SG L ++V+DSVAALVP+AE+EG++GDSHVGL ARLMSQA+RK+ G +S + T Sbjct: 121 VDLLVKSGELSIVVVDSVAALVPRAELEGDIGDSHVGLHARLMSQAMRKLTGTISSTNTL 180 Query: 302167 AIFINQLREKVG-VFFGSPETTSGGKALKFYASVRIDVRRIETLKEGQDAVGNRTRAKIV 302343 +++NQLREK+G V +G ETT+GGKAL+FYASVR+DVRRI T KEG +AVGNRTR K+V Sbjct: 181 TLWVNQLREKIGNVGYGPNETTTGGKALRFYASVRMDVRRIATEKEGDEAVGNRTRVKVV 240 Query: 302344 KNKIAPPFKQAEFDIIYGQGISREGSLIDMGVDNGIIRKSGSWFTYDGDQLGQGKENVRN 302523 KNK+APP + AEF ++YG+GISRE L+D+ V G+++KSG+WF Y + QGK Sbjct: 241 KNKLAPPHRNAEFSVVYGEGISREVELLDLAVSQGLVKKSGAWFKYGDKNVAQGKPKAVQ 300 Query: 302524 FLRDNPGLAEEIELKIK 302574 +L+ NP + + IE I+ Sbjct: 301 WLKANPDITDSIEQAIR 317 >ref|NP_818250.1|gp199 Length = 1131 Score = 389 bits (1000), Expect = e-106 Identities = 324/1152 (28%), Positives = 514/1152 (44%), Gaps = 87/1152 (7%) Frame = +3 Query: 559029 LHVHTEYSMLDGAARLTDLMAATKASGMSAIATTDHGYLFGAFDFWSQATAAGIKPIIGV 559208 LH H E S+LDG +R ++ A K G ++A TDH + G F F AAG+KP++G Sbjct: 8 LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 67 Query: 559209 EAYVTPGTDRRDKTRVKWRTDESQKRDDLSGGGAYTHMTLLSRNNTGMRNLFKASSYASL 559388 E +W + + R+ +G +H+ LL+ NNTG+RNL+ SS A Sbjct: 68 EQ--------------RWMLNIADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYE 113 Query: 559389 DSVFSKWPRIDQDLLETYSEGLIATTGCPSGEIQVRLRLGQYEEARAAAGKYREMFGKDN 559568 F K P++D LL Y +GL A+ GC + Q + AR G +FG D+ Sbjct: 114 PEQFYKKPQLDPGLLMQYRDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFG-DH 172 Query: 559569 YYVEL---------MDHGLSIEKRVTK---DLIRLSKEMDIPLVATNDLHYTHESDAKAH 559712 +Y EL ++ R++K +RL+KEM +PLV ND HY HE + H Sbjct: 173 FYSELHTWQFINPVSPEQQALNARMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEH 232 Query: 559713 EALLAIQSGSKLIEPTYDQGGSRFAFSGSGYYLKSGAEMRALF-------SEFPEACDNT 559871 A+ + +GS + ++G + ++ + E+R S EA N+ Sbjct: 233 RAIWDMSTGSWKKDQHEERGHA-------ADWMMNADEIRHYMGLHGVGTSVIEEAMRNS 285 Query: 559872 LEIAEKCEVSFDTSANYMPKFPCPPGEDETSWLVKEVQTGLE-YRYPGGIPDDV-RKQAD 560045 IA++C D MP+ ED ++ + ++ G + + G+P+DV R++ + Sbjct: 286 GWIADQCNAEIDGKLLAMPRLHATDAEDAAAFR-RAIEEGFKRFVVDKGLPEDVYRQRLE 344 Query: 560046 YELDVIISMGFPGYFLVVADFINWSKDNGIR-------------VGPGRGSGAGSMVAYA 560186 YE +II GYF VVAD++ +++ GPGRGS GS+V Y Sbjct: 345 YEAKLIIDKNMAGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYV 404 Query: 560187 MRITDLDPLKHGLFFERFLNPDRVSMPXXXXXXXXXXXGEVIDYVTRKYGDERVAMIVTY 560366 M IT +DP+K+ L FERF+NPDR P G V Y+ ++YGD V I T Sbjct: 405 MGITSIDPIKYDLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTR 464 Query: 560367 GTIKTKMALKDSARVLGKPFSMGERL------TKALPPAEMAKDIPLADIENAESKRYNE 560528 + + L+D R G PF +++ + P E ++P E+ + + E Sbjct: 465 THSRPRQMLQDLCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELP----EDEDPPTWGE 520 Query: 560529 -----AGEFREFVDSDPDARETFETAKGIEGLKRQWGVHAAGVIMSSDPII-DVIPIMRR 560690 GE + PD F + + + R GVH AGV++++DP+ +IP R+ Sbjct: 521 VLQEIGGELAPYAKKYPD---LFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRK 577 Query: 560691 FQDGQVITQFDYPTSEGLGLIKMDFLGLRNLTIISDAVENIKANR----DYD---LGL-- 560843 TQFD E LG +K D L + L ++ A + I DYD G+ Sbjct: 578 GGADIRATQFDMYELEELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPE 637 Query: 560844 ---------EHLDLDDRGAYDLLSRGDTLGVFQXXXXXXXXXXXXMKPDNFEDISATIAL 560996 E L+D YD + RG T G+FQ +P + D++ ++ Sbjct: 638 GAEKVITLNEERYLNDPAIYDQIDRGQTAGLFQVNTPAGTKLAMRFRPRSVVDMADLASI 697 Query: 560997 YRPGPMGADSHTN-FALRKNGLQEVTPIHPELEE---PLEDILGTTYGLIIYQEQVMAIA 561164 RPG + + R++G ++VT HP +E P + TYG+++YQEQ++ A Sbjct: 698 NRPGVTRVPGLLDKYIERRHGREQVTYDHPLMESITGPSSSM--NTYGILVYQEQLIRTA 755 Query: 561165 QKVAGYSLGQADILRRAMGKKKKSELDKQQVGFFGG------MKERGYSEAAAQALWDIL 561326 +++AG++ G+A+ LR+ +GKKK +++ + F G +G + A +W L Sbjct: 756 KELAGFTPGEAERLRKGIGKKKMEIINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSL 815 Query: 561327 LPFSDYAFNKAHSAAYGLVSYWTAFLKAHYTAEYMAALLTSVGDNKDKLAIYLNECRRLG 561506 YAFNK+H Y L A++K +Y E++ L + DK +L ECR+ Sbjct: 816 KAAGAYAFNKSHGVGYALQPCQEAWVKHYYFDEFITGCLVI---HTDKTIRFLRECRQRK 872 Query: 561507 ITVLPPDVNDSALHFTPVGEDIRFGMGAVRNVGANVVDGIVEARGEKGAYTSFTDFLDKV 561686 VLPPDVN S FT E IRFG+ + +G + I+ R + DFL + Sbjct: 873 RAVLPPDVNQSGAGFTLTDEGIRFGLTDISGIGDAAMPDILANR----PFKDLDDFLARA 928 Query: 561687 -PSHVCNKRTIESLIKAGGFDSLGQTRRSLVE-VHEEAVDSVIGVKRQEANXXXXXXXXX 561860 S K +++LIK G FD G+ R+ ++E V+ VK + + Sbjct: 929 SKSGGAKKGVVDALIKVGAFDFTGEHRQVMLEKVYRHRRGLSAPVKWAKMSLDEQVAEIA 988 Query: 561861 XXXXXEPSFSVAIPDRPEWEKKEKL---AFERDMIGLYVSDHPLNGLEGVLXXXXXXXXX 562031 +P D P + ++ E +M+G +VS P+ Sbjct: 989 AKRRVKPE------DYPVYNFEDPQFIHDLEVEMLGTFVSYDPM------------AKYA 1030 Query: 562032 XVVDPESHRH--------DGSQVKICGMITQVSRKVSKNSGKPYAIVTVEDLNAEVEVMF 562187 ++D E RH G + + G + + KN GK A + V + E++ Sbjct: 1031 RMIDGECIRHPMDYDDFEPGDRFCVGGKLVKARTHRQKN-GKQMAFLAVHWNEEDFEILA 1089 Query: 562188 FGDTYEPVASLL 562223 F D + LL Sbjct: 1090 FADAWARCQPLL 1101 Score = 228 bits (582), Expect = 9e-58 Identities = 245/980 (25%), Positives = 404/980 (41%), Gaps = 110/980 (11%) Frame = +3 Query: 823911 AELHVHSQFSFLDGASDPEELVXXXXXXXXXXXXXXDHNGLYGAVRFAHAAAEVGLPTVF 824090 A LH H + S LDG S PEE+ DH+ + G RF A G+ V Sbjct: 6 AALHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVL 65 Query: 824091 GAELSVGLE-----EKIPGQTDPDATHLLVLAR---GVEGYHRLSMAITEANLAGEKNRP 824246 GAE L E+ G +D ++H+++LA G+ LS E +K + Sbjct: 66 GAEQRWMLNIADSRERKTGASD--SSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQL 123 Query: 824247 VFGLEELAAMSGDWTILTGCRKGPLRRALNDPDGGLGALR--KLIALFGADRLAVELS-- 824414 GL + G W GC + + L L+ +FG D EL Sbjct: 124 DPGLL-MQYRDGLWAS-DGCMLTRFADYVVNDQEDLARQEWGVLLHIFG-DHFYSELHTW 180 Query: 824415 ---RDGTPDDDERLRHLGD-------LAQRTHLPIVASNSVHFATRAQWKSAQVRASVRS 824564 +P+ + LA+ +P+V N H+A QW+ + + + Sbjct: 181 QFINPVSPEQQALNARMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMST 240 Query: 824565 -------RLSLDELAGWLPATANARIHTG-EEMAARFPRQALENAVAIGRECSFVLNSAR 824720 A W+ R + G + +A+ N+ I +C+ ++ Sbjct: 241 GSWKKDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKL 300 Query: 824721 PDLPRAPMPDDRGAEEYLRELIEDRGARRYGTRAENPKAW--AQLDREMDMIATLGFCGY 824894 +PR D A + R + E G +R+ P+ +L+ E +I GY Sbjct: 301 LAMPRLHATDAEDAAAFRRAIEE--GFKRFVVDKGLPEDVYRQRLEYEAKLIIDKNMAGY 358 Query: 824895 FLIVYD-------------ITEFCHRVAIFC-QGRGSAANSAVCYVLDITAVDAVKHELL 825032 F +V D IT C GRGSA S V YV+ IT++D +K++L+ Sbjct: 359 FNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKYDLM 418 Query: 825033 FDRFLSPDRKGYPDIDIDIESGRREEVIQYVYDHFGRERAAQVANVITYRAKSAIRDAAF 825212 F+RF++PDR +PDID+D + ++ V QY+ +G + R + ++D Sbjct: 419 FERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQDLCR 478 Query: 825213 SLGYEPGQQ----DAFSKAS-----NRWSTLPEAEDSPVPAPVL---------------- 825317 + G G+ D + LPE ED P VL Sbjct: 479 AQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAKKYPD 538 Query: 825318 --TIADDLLGSPRHLGIHSGGMILADRPI-GEVVPIEKATMGHRTVVQWDKDDCAVMDLV 825488 + + ++ R +G+H G+++ P+ ++P + Q+D + + V Sbjct: 539 LFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELEELGGV 598 Query: 825489 KFDLLGLGMLTALHEMVDLVHRHTGELIER--------------AHIDDE----DEAVYT 825614 K DLL L L DL++ G I+ +++E D A+Y Sbjct: 599 KDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVITLNEERYLNDPAIYD 658 Query: 825615 MLQKADAVGVFQVESRAQLATLPRLRPETFYDLAVQVALIRPGPIQ-GGSVHPYIRRRQG 825791 + + G+FQV + A R RP + D+A ++ RPG + G + YI RR G Sbjct: 659 QIDRGQTAGLFQVNTPAGTKLAMRFRPRSVVDMADLASINRPGVTRVPGLLDKYIERRHG 718 Query: 825792 LDKVEYLHPLLR-----KSLAKTYGVPLFQEQLMQMAIDVGGFTGADADQLRQAMGSRRS 825956 ++V Y HPL+ S TYG+ ++QEQL++ A ++ GFT +A++LR+ +G ++ Sbjct: 719 REQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGIGKKKM 778 Query: 825957 EKRMTELAQKFQTGAAAN------GVDEETAESIFSTIAAFANYGFPESHAISFANLVYQ 826118 E + EL KF G AN G + A+ I+ ++ A Y F +SH + +A Q Sbjct: 779 E-IINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYALQPCQ 837 Query: 826119 SAWFKYHHHAAFTVGLLRSQPMGFYSPQSL--VADARRHGVRILPVDIRHSMAGSDLERL 826292 AW K+++ F G L ++ +++ + + R+ +LP D+ S AG L Sbjct: 838 EAWVKHYYFDEFITGCL-----VIHTDKTIRFLRECRQRKRAVLPPDVNQSGAGFTLT-- 890 Query: 826293 ESDGTGDSGEFGIRLGLDSVSHVGSFAEVIVTERAKAPFTSVADL---AERTGIGKQG-L 826460 + GIR GL +S +G A + A PF + D A ++G K+G + Sbjct: 891 ---------DEGIRFGLTDISGIGDAAMPDIL--ANRPFKDLDDFLARASKSGGAKKGVV 939 Query: 826461 EGLATAGALSCFDLDRRQAL 826520 + L GA F + RQ + Sbjct: 940 DALIKVGAFD-FTGEHRQVM 958 >ref|NP_818503.1|gp203 Length = 442 Score = 348 bits (893), Expect = 8e-94 Identities = 183/361 (50%), Positives = 250/361 (69%), Gaps = 1/361 (0%) Frame = +3 Query: 297438 RVVEALRDVLEQFKIDAAVTGFSRGPTVTRYEVELGAGTKVEKVTALSKNIAYAVASADV 297617 +++ ALR+ F I+A VTG + GP+VTRYE+ LG G +++KV L +AYA+A+ V Sbjct: 12 QIISALRE----FDIEAKVTGRTDGPSVTRYEITLGPGVRIQKVAQLQSQLAYALATESV 67 Query: 297618 RILSPIPGKKAIGIEIPNSDRENVALGDVLRSKAARKTENSLVMGVGKDVEGGFVVADLS 297797 R+++PIPGK A+GIE+P +R+ V L ++ + ++ L + VGKDVEG + +L+ Sbjct: 68 RVVAPIPGKTAVGIELPRPERQTVRLQHIVP-----EDDHPLTVAVGKDVEGKDISLNLA 122 Query: 297798 KMPHLLVAGATGAGKSSFVNSMITSIMMRATPDEVRMILVDPKRVELTIYEGIPHLITPI 297977 KMPHLLVAGATG+GKSSF+NSM+ S++ RATPD V++I++DPK VELT Y GIPHL+ P+ Sbjct: 123 KMPHLLVAGATGSGKSSFINSMLVSLLYRATPDRVKLIMIDPKCVELTPYNGIPHLLQPV 182 Query: 297978 ITNPKKAAEALEWVVREMDARYDDLANFGFKHINEFNKAVREGRVEVPAGSERXXXXXXX 298157 +T +A + L W+ EMD RY + G +H + Sbjct: 183 VTEADEAVKTLRWLTVEMDDRYRQMQEAGVRHAEKLG--------------------LPY 222 Query: 298158 XXXXXDELADLMMVA-PRDVEASIQRITQLARAAGIHLVLATQRPSVDVVTGLIKANVPS 298334 DELADLMM ++VEA+I RI Q ARAAGIHLVLATQRPSVDVVTGLIK+NVPS Sbjct: 223 IVVVVDELADLMMGGYKKEVEANIVRIAQKARAAGIHLVLATQRPSVDVVTGLIKSNVPS 282 Query: 298335 RLAFATSSLADSRVVLDQPGAEKLIGQGDALFLPMGAAKPMRVQGAWVNESEIEKVVDHV 298514 RL+FAT+SL DSRV+LD+ GAE+L+G GD LFLP+GA +R+QGA+V++ EIE V++V Sbjct: 283 RLSFATASLTDSRVILDEGGAEQLMGMGDGLFLPVGARSAIRIQGAFVSDGEIEAAVNNV 342 Query: 298515 K 298517 + Sbjct: 343 R 343 >ref|NP_932363.1|hypothetical protein Length = 389 Score = 309 bits (791), Expect = 5e-82 Identities = 179/391 (45%), Positives = 246/391 (62%), Gaps = 8/391 (2%) Frame = -2 Query: 1692479 DPQIAEVLDQELGRQRSTLEMIASENFVPRAVLQAQGSVLTNKYAEGYPGKRYYGGCEYV 1692300 D + +++ E RQ + +IASEN+V V++AQGS+ TNKYAEGYPGKRYYGGC Sbjct: 3 DKVVQSIIEDEAMRQYCEVCLIASENYVSDDVMKAQGSIFTNKYAEGYPGKRYYGGCVKA 62 Query: 1692299 DVAETLAIDRAKSLFGAEYANVQSHSGASANAAVMHALARQGDKMLGLSLAHGGHLTHGM 1692120 D E LAI+RAK LF +ANVQ HSG+ AN AV AL + GD +L +SL GGHLTHG Sbjct: 63 DEIENLAIERAKELFSCNFANVQPHSGSQANQAVYQALLKPGDSVLAMSLDCGGHLTHGH 122 Query: 1692119 KINFSGRLYDVASYEVDPDTYRIDMDKVRERALEHRPE--VIVAGWSAYPRQLDFQAFRD 1691946 K N SG++YD Y V D I++++V E+ + P+ ++V G+SAY +++ + Sbjct: 123 KANASGKIYDFHHYGVFSDG-TININQVVEQ-IRTIPDLKLVVIGYSAYVGRINEATYAK 180 Query: 1691945 IAD---EVGAKLWVDMAHFAGLVAAGLHPNPVPF-ADVVSSTVHKTIGGPRSGFILGKE- 1691781 IAD +GAKL VDMAHFAG VAA LH NP+ + ADVV++T HKT+ GPR G IL + Sbjct: 181 IADAAHSIGAKLMVDMAHFAGFVAARLHANPLKWGADVVTTTTHKTLRGPRGGLILTNDA 240 Query: 1691780 EYAKKLNSAVFPGQQGGPLMHVIXXXXXXXXXXASEEFKARQERTVRGAQILAERLLADD 1691601 + AKK+NSA+FPG QGGPL+HVI E++ + A I+ E Sbjct: 241 DIAKKVNSAIFPGIQGGPLLHVIAAKAVCFGEALREDYVDYMIQVAHNASIMYETF---- 296 Query: 1691600 VANAGATVLTGGTDVHLVLVDLRNS-ALDGQQAEDLLHEVGITVNRNAVPFDPRPPMVTS 1691424 +A L G T+ H VL++ S L G++AE LL + GI VN+N +P D R P+ TS Sbjct: 297 --DAAGHKLVGFTENHQVLLNTYESFGLTGREAEQLLEKEGIIVNKNMLPNDTRSPVETS 354 Query: 1691423 GLRIGTPALATRGFGDAEFTEVADVIAEALK 1691331 G+RIG+PA+ TRG+ +++F ++ I L+ Sbjct: 355 GIRIGSPAMTTRGWVESDFYDITIKIMHILE 385 >ref|NP_818618.1|gp80 Length = 1111 Score = 270 bits (690), Expect = 3e-70 Identities = 261/964 (27%), Positives = 417/964 (43%), Gaps = 74/964 (7%) Frame = +3 Query: 559020 FVHLHVHTEYSMLDGAARLTDLMAATKASGMSAIATTDHGYLFGAFDFWSQATAAGIKPI 559199 FV H H +S D + A + GM A+ T++HG + F + GIKPI Sbjct: 3 FVSFHTHNTFSYADALGMPSIHAARAEELGMWALGTSNHGNVNDHAQFERECKERGIKPI 62 Query: 559200 IGVEAYVTPGTDRRDKTRVKWRTDESQKRDDLSGGGAYTHMTLLSRNNTGMRNLFKASSY 559379 G E Y +P DKTR K TH+T+ + N G RNL + + Sbjct: 63 FGCEIYFSP-VGEEDKTRRK------------------THLTIFAMNEIGYRNLNRIITQ 103 Query: 559380 ASLDSVFSKWPRIDQDLLETYSEGLIATTGCPSGEIQVRLRLGQY-------------EE 559520 + +D+ +WP + + LE EG++ +GC + L G+Y + Sbjct: 104 SYVDAY--QWPTVSWENLEANHEGILVLSGCADSLLSCTLLGGKYLGEQRSHVTDDDMDN 161 Query: 559521 ARAAAGKYREMFGKDNYYVELMDHGLSIEKRVTKDLI-RLSKEMDIPLVATNDLHYTHES 559697 AR +Y ++FG + + +E+ R I LS++ +PLVAT D+HY Sbjct: 162 ARRQIQRYLDVFG-NRFALEVQRFPHYDRTRALNPAIAELSRDTGVPLVATADVHYPFPE 220 Query: 559698 DAKAHEALLAIQSGSKLIEPTYDQGGSRFAFSGSGYYLKSGAEMRALF-------SEFPE 559856 K L A + S P + S + S + Y S E+ ++ + Sbjct: 221 QNKLQALLHAARWKSS---PDFAAEAS-WEHSANLTYPLSDKEIHDDLVATGLDSADAWK 276 Query: 559857 ACDNTLEIAEKCEVSFDTSANYMPKFPCPPGEDETSWLVKEVQTGLEYRYPGGIPDDVRK 560036 A T +AE+C V + +F C G L +E+ G +YR PD R+ Sbjct: 277 AIQYTSILAERCTVELPKAKPL--RFVCDKGLTAKQQLSREIAKGWKYRVAQR-PDMARR 333 Query: 560037 QADY------ELDVIISMGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRIT 560198 +A+Y E +I F YFLV++D + +KD I VGP RGS A S+++Y +RIT Sbjct: 334 KAEYVKRLQYEFKIITDKDFGDYFLVISDLVRRAKDKSIDVGPARGSAAASLISYLLRIT 393 Query: 560199 DLDPLKHGLF----FERFLNPDRVSMPXXXXXXXXXXXGEVIDYVTRKYGDERVAMIVTY 560366 ++DPL H LF FERF++P R P E+ YG E VA + Sbjct: 394 EIDPL-HPLFNKMVFERFIDPFRSDYPDIDLDFDDEKRWEIELDAKNLYGPENVASVANN 452 Query: 560367 GTIKTKMALKDSARVLGKPF----SMGERLTKALPPAEMAKDIPLADIENAESKRYNEAG 560534 K LKD AR P ++ +R T + + D ++D+ + + AG Sbjct: 453 TGYHGKNTLKDVARAYKLPLETFKAIAKRTTVRVETDDKRND-SISDVLESYATHPEIAG 511 Query: 560535 EFREFVDSDPDARETFETAKGIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDG---- 560702 D A E+ G +G VHA G +++SDPI DV I + + Sbjct: 512 LIEAHADKLAMA-VALESGNG-DGNLHSSSVHACGFVIASDPIPDVCAIYLKDKGSGSKK 569 Query: 560703 ---QVITQFDYPTSEGLGLIKMDFLGLRNLTIIS-----DAVE----NIKANRDYDL--- 560837 QVI +D +E LG++K+DFLG + I VE + +DYD Sbjct: 570 TKVQVIP-YDKRDAESLGMLKVDFLGSATMGAIGLMRKWSRVELEELYLSIYKDYDRWIR 628 Query: 560838 --------GLEHLDLDDRGAYDLLSR---GDTLGVFQXXXXXXXXXXXXMKPDNFEDISA 560984 G + + ++L R D +G+ Q ++P +F++++A Sbjct: 629 VQKRIKESGGKRVGFTANRFDNILKRFRNDDVVGIMQFEGGTTRQVCRNVQPVDFDELAA 688 Query: 560985 TIALYRPGPMGADSHTNFALRKNGLQEVTPIHPELEEPLEDILGTTYGLIIYQEQVMAIA 561164 AL RPGP +T++ KNG ++ IHP+ + + T+G I+YQEQ+M I Sbjct: 689 CTALSRPGPYYGGQYTDYVAVKNGEKDWARIHPK---GFDRHVAFTFGQIVYQEQIMWIL 745 Query: 561165 QKVAGYSLGQADILRRAMGKKK-KSELDKQQVGFFGGMKER-GYSEAAAQALWDILLPFS 561338 + +AG+ + +R+ +GKK + + + + F G + G A ++ + + Sbjct: 746 RDLAGFDNAEVLRVRKIIGKKLGEFQFEAIKQAFIDGCAQTCGVDPDTALRVFGAIRTAA 805 Query: 561339 DYAFNKAHSAAYGLVSYWTAFLKAHYTAEYMAALLTSVGDNKDKL-----AIYLNECRRL 561503 YAFN AH+ +Y L++YW K +T E+ A+ L GD K ++ + E R+ Sbjct: 806 GYAFNIAHAYSYALIAYWQMGFKMDHTTEFFASTLYKNGDGKKEIPRRTAVLQDAEAHRI 865 Query: 561504 GITVLPPDVNDSALHFTPVGEDIRF--GMGAVRNVGANVVDGIVEARGEKGAYTSFTDFL 561677 GI D+N S ++ P + +G V G + GI EA + + D+ Sbjct: 866 GIGGW--DLNLSGANWRPYYDHSAHSRNLGTVM-PGFQQIPGIAEATAK-----AILDWR 917 Query: 561678 DKVP 561689 D +P Sbjct: 918 DNLP 921 Score = 203 bits (517), Expect = 3e-50 Identities = 219/893 (24%), Positives = 364/893 (40%), Gaps = 103/893 (11%) Frame = +3 Query: 823902 VEWAELHVHSQFSFLDGASDPEELVXXXXXXXXXXXXXXDHNGLYGAVRFAHAAAEVGLP 824081 +++ H H+ FS+ D P +H + +F E G+ Sbjct: 1 MKFVSFHTHNTFSYADALGMPSIHAARAEELGMWALGTSNHGNVNDHAQFERECKERGIK 60 Query: 824082 TVFGAEL---SVGLEEKIPGQTDPDATHLLVLARGVEGYHRLSMAITEANLAGEKNRPVF 824252 +FG E+ VG E+K +T HL + A GY L+ IT++ + + P Sbjct: 61 PIFGCEIYFSPVGEEDKTRRKT-----HLTIFAMNEIGYRNLNRIITQSYVDAYQ-WPTV 114 Query: 824253 GLEELAAMSGDWTILTGCRKGPLRRAL---------------NDPDGGLGALRKLIALFG 824387 E L A +L+GC L L +D D +++ + +FG Sbjct: 115 SWENLEANHEGILVLSGCADSLLSCTLLGGKYLGEQRSHVTDDDMDNARRQIQRYLDVFG 174 Query: 824388 ADRLAVELSRDGTPDDDERLRH-LGDLAQRTHLPIVASNSVHFAT-----------RAQW 824531 +R A+E+ R D L + +L++ T +P+VA+ VH+ A+W Sbjct: 175 -NRFALEVQRFPHYDRTRALNPAIAELSRDTGVPLVATADVHYPFPEQNKLQALLHAARW 233 Query: 824532 KSAQVRASVRSRLSLDELAGWLPATANARIH-----TGEEMAARFPRQALENAVAIGREC 824696 KS+ A+ S + A ++ IH TG + A + +A++ + C Sbjct: 234 KSSPDFAA---EASWEHSANLTYPLSDKEIHDDLVATGLDSADAW--KAIQYTSILAERC 288 Query: 824697 SFVLNSARPDLPRAPMPDDRGA---EEYLRELIED---RGARRYGTRAENPKAWAQLDRE 824858 + L A+P D+G ++ RE+ + R A+R + +L E Sbjct: 289 TVELPKAKP----LRFVCDKGLTAKQQLSREIAKGWKYRVAQRPDMARRKAEYVKRLQYE 344 Query: 824859 MDMIATLGFCGYFLIVYDITEFCHRVAIFC-QGRGSAANSAVCYVLDITAVDAVK---HE 825026 +I F YFL++ D+ +I RGSAA S + Y+L IT +D + ++ Sbjct: 345 FKIITDKDFGDYFLVISDLVRRAKDKSIDVGPARGSAAASLISYLLRITEIDPLHPLFNK 404 Query: 825027 LLFDRFLSPDRKGYPDIDIDIESGRREEVIQYVYDHFGRERAAQVANVITYRAKSAIRDA 825206 ++F+RF+ P R YPDID+D + +R E+ + +G E A VAN Y K+ ++D Sbjct: 405 MVFERFIDPFRSDYPDIDLDFDDEKRWEIELDAKNLYGPENVASVANNTGYHGKNTLKDV 464 Query: 825207 --AFSLGYE----------------PGQQDAFSKASNRWSTLP------EAEDSPVPAPV 825314 A+ L E + D+ S ++T P EA + V Sbjct: 465 ARAYKLPLETFKAIAKRTTVRVETDDKRNDSISDVLESYATHPEIAGLIEAHADKLAMAV 524 Query: 825315 LTIADDLLGSPRHLGIHSGGMILADRPIGEVVPI---EKATMGHRTVVQ---WDKDDCAV 825476 + + G+ +H+ G ++A PI +V I +K + +T VQ +DK D Sbjct: 525 ALESGNGDGNLHSSSVHACGFVIASDPIPDVCAIYLKDKGSGSKKTKVQVIPYDKRDAES 584 Query: 825477 MDLVKFDLLGLGMLTALHEMVDLVHRHTGELIERAHID---------------------- 825590 + ++K D LG + A+ M EL + D Sbjct: 585 LGMLKVDFLGSATMGAIGLMRKWSRVELEELYLSIYKDYDRWIRVQKRIKESGGKRVGFT 644 Query: 825591 -DEDEAVYTMLQKADAVGVFQVESRAQLATLPRLRPETFYDLAVQVALIRPGPIQGGSVH 825767 + + + + D VG+ Q E ++P F +LA AL RPGP GG Sbjct: 645 ANRFDNILKRFRNDDVVGIMQFEGGTTRQVCRNVQPVDFDELAACTALSRPGPYYGGQYT 704 Query: 825768 PYIRRRQGLDKVEYLHPL-LRKSLAKTYGVPLFQEQLMQMAIDVGGFTGADADQLRQAMG 825944 Y+ + G +HP + +A T+G ++QEQ+M + D+ GF A+ ++R+ +G Sbjct: 705 DYVAVKNGEKDWARIHPKGFDRHVAFTFGQIVYQEQIMWILRDLAGFDNAEVLRVRKIIG 764 Query: 825945 SRRSEKRMTELAQKFQTGAAAN-GVDEETAESIFSTIAAFANYGFPESHAISFANLVYQS 826121 + E + + Q F G A GVD +TA +F I A Y F +HA S+A + Y Sbjct: 765 KKLGEFQFEAIKQAFIDGCAQTCGVDPDTALRVFGAIRTAAGYAFNIAHAYSYALIAYWQ 824 Query: 826122 AWFKYHHHAAFTVGLLRSQPMG---FYSPQSLVADARRHGVRILPVDIRHSMA 826271 FK H F L G +++ DA H + I D+ S A Sbjct: 825 MGFKMDHTTEFFASTLYKNGDGKKEIPRRTAVLQDAEAHRIGIGGWDLNLSGA 877 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 222 bits (566), Expect = 6e-56 Identities = 129/278 (46%), Positives = 165/278 (59%), Gaps = 6/278 (2%) Frame = -3 Query: 1806232 RIAVSSY--YAFKKRLPS---TRSRRDRELMVVIQDVYEANYSCYGARKMWKAINREYAD 1806068 RIA S Y +A + R PS R++RD L I+ V++AN YG K+WK +NRE Sbjct: 2 RIAPSGYRRHAAQLRDPSKRCARAKRDELLQPEIKRVWQANMQVYGVPKVWKQMNREGIT 61 Query: 1806067 RFGPVARCTIERLMHRLSIDGVRRRRKRPKTASARAEECPGDLVEREFTAAAPNCLWVAD 1805888 VARCT+ RLM + G R ++ T + P D V R+F A PN LWV+D Sbjct: 62 ----VARCTVGRLMKLQGLRGAVRGKRVRTTITDVTAPRPLDRVNRQFKADRPNQLWVSD 117 Query: 1805887 ITYVPTRSGWVYTTFILDVFHREIVGWQVTNHMRESLARDALTMALAAKFRAGEDVSGLV 1805708 TYV T GW+Y F++DVF R IVGW+V++ M DAL AL A+ + GED L+ Sbjct: 118 FTYVSTWQGWLYVAFVIDVFARRIVGWRVSSSMTTDFVLDALEQALYAR-QPGED-GTLI 175 Query: 1805707 HHSDRGVQFRSIRYGETLAESEVVASVGSRGDSYDNAMAEALNSVYKAELIDRR-EWSGL 1805531 HHSDRG Q+ SIRY E LAE+ + SVGSRGDSYDNA+AE +N +YK ELI RR W Sbjct: 176 HHSDRGSQYVSIRYSERLAEAGIEPSVGSRGDSYDNALAETINGLYKTELIHRRAPWKTR 235 Query: 1805530 IEVMAETSKWIRWYNRQRLHSAIGYRPPFELQAEWTNQ 1805417 V T +W+ WYN RL +GY PP E +A + Q Sbjct: 236 ESVELATLEWVAWYNHHRLMEPLGYIPPAEAEANYYRQ 273 Score = 222 bits (566), Expect = 6e-56 Identities = 129/278 (46%), Positives = 165/278 (59%), Gaps = 6/278 (2%) Frame = +2 Query: 1793447 RIAVSSY--YAFKKRLPS---TRSRRDRELMVVIQDVYEANYSCYGARKMWKAINREYAD 1793611 RIA S Y +A + R PS R++RD L I+ V++AN YG K+WK +NRE Sbjct: 2 RIAPSGYRRHAAQLRDPSKRCARAKRDELLQPEIKRVWQANMQVYGVPKVWKQMNREGIT 61 Query: 1793612 RFGPVARCTIERLMHRLSIDGVRRRRKRPKTASARAEECPGDLVEREFTAAAPNCLWVAD 1793791 VARCT+ RLM + G R ++ T + P D V R+F A PN LWV+D Sbjct: 62 ----VARCTVGRLMKLQGLRGAVRGKRVRTTITDVTAPRPLDRVNRQFKADRPNQLWVSD 117 Query: 1793792 ITYVPTRSGWVYTTFILDVFHREIVGWQVTNHMRESLARDALTMALAAKFRAGEDVSGLV 1793971 TYV T GW+Y F++DVF R IVGW+V++ M DAL AL A+ + GED L+ Sbjct: 118 FTYVSTWQGWLYVAFVIDVFARRIVGWRVSSSMTTDFVLDALEQALYAR-QPGED-GTLI 175 Query: 1793972 HHSDRGVQFRSIRYGETLAESEVVASVGSRGDSYDNAMAEALNSVYKAELIDRR-EWSGL 1794148 HHSDRG Q+ SIRY E LAE+ + SVGSRGDSYDNA+AE +N +YK ELI RR W Sbjct: 176 HHSDRGSQYVSIRYSERLAEAGIEPSVGSRGDSYDNALAETINGLYKTELIHRRAPWKTR 235 Query: 1794149 IEVMAETSKWIRWYNRQRLHSAIGYRPPFELQAEWTNQ 1794262 V T +W+ WYN RL +GY PP E +A + Q Sbjct: 236 ESVELATLEWVAWYNHHRLMEPLGYIPPAEAEANYYRQ 273 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 220 bits (560), Expect = 3e-55 Identities = 126/293 (43%), Positives = 173/293 (59%), Gaps = 5/293 (1%) Frame = -3 Query: 1806298 IDNNRDEFGVEPIVRALSGTAARIAVSSYYAFKKRLP-----STRSRRDRELMVVIQDVY 1806134 +D R+++GV P+ L IA S+YY +++ S R++ D L IQ VY Sbjct: 5 LDKLREQYGVGPVCSEL-----HIAPSTYYHCQQQRHHPDKRSARAQHDDWLKREIQRVY 59 Query: 1806133 EANYSCYGARKMWKAINREYADRFGPVARCTIERLMHRLSIDGVRRRRKRPKTASARAEE 1805954 + N+ YG RK+W+ + RE VARCT+ RLM + + GV R +K T S +A Sbjct: 60 DENHQVYGVRKVWRQLLREGIR----VARCTVARLMAVMGLAGVLRGKKVRTTISRKAVA 115 Query: 1805953 CPGDLVEREFTAAAPNCLWVADITYVPTRSGWVYTTFILDVFHREIVGWQVTNHMRESLA 1805774 GD V R+F A P+ LWVAD TYV T G+VY FI+DVF IVGW+V++ M + Sbjct: 116 A-GDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFV 174 Query: 1805773 RDALTMALAAKFRAGEDVSGLVHHSDRGVQFRSIRYGETLAESEVVASVGSRGDSYDNAM 1805594 DAL AL A+ SG +HHSD+G Q+ S+ Y E L E+ ++AS GS GDSYDNAM Sbjct: 175 LDALEQALWAR-----RPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAM 229 Query: 1805593 AEALNSVYKAELIDRREWSGLIEVMAETSKWIRWYNRQRLHSAIGYRPPFELQ 1805435 AE++N +YKAE+I R+ W EV T W+ WYN +RL +G+ PP E + Sbjct: 230 AESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAEAE 282 Score = 220 bits (560), Expect = 3e-55 Identities = 126/293 (43%), Positives = 173/293 (59%), Gaps = 5/293 (1%) Frame = +2 Query: 1793381 IDNNRDEFGVEPIVRALSGTAARIAVSSYYAFKKRLP-----STRSRRDRELMVVIQDVY 1793545 +D R+++GV P+ L IA S+YY +++ S R++ D L IQ VY Sbjct: 5 LDKLREQYGVGPVCSEL-----HIAPSTYYHCQQQRHHPDKRSARAQHDDWLKREIQRVY 59 Query: 1793546 EANYSCYGARKMWKAINREYADRFGPVARCTIERLMHRLSIDGVRRRRKRPKTASARAEE 1793725 + N+ YG RK+W+ + RE VARCT+ RLM + + GV R +K T S +A Sbjct: 60 DENHQVYGVRKVWRQLLREGIR----VARCTVARLMAVMGLAGVLRGKKVRTTISRKAVA 115 Query: 1793726 CPGDLVEREFTAAAPNCLWVADITYVPTRSGWVYTTFILDVFHREIVGWQVTNHMRESLA 1793905 GD V R+F A P+ LWVAD TYV T G+VY FI+DVF IVGW+V++ M + Sbjct: 116 A-GDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFV 174 Query: 1793906 RDALTMALAAKFRAGEDVSGLVHHSDRGVQFRSIRYGETLAESEVVASVGSRGDSYDNAM 1794085 DAL AL A+ SG +HHSD+G Q+ S+ Y E L E+ ++AS GS GDSYDNAM Sbjct: 175 LDALEQALWAR-----RPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAM 229 Query: 1794086 AEALNSVYKAELIDRREWSGLIEVMAETSKWIRWYNRQRLHSAIGYRPPFELQ 1794244 AE++N +YKAE+I R+ W EV T W+ WYN +RL +G+ PP E + Sbjct: 230 AESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAEAE 282 >ref|NP_046685.1|putative DNA polymerase Length = 1305 Score = 211 bits (537), Expect = 1e-52 Identities = 237/1028 (23%), Positives = 426/1028 (41%), Gaps = 120/1028 (11%) Frame = +3 Query: 559032 HVHTEYS---MLDGAARLTDLMAATKASGMSAIATTDHGYLFGAFDFWSQATAA------ 559184 H HT+ S +LD + +L+ +A TDH L D Sbjct: 5 HCHTDRSNIRLLDSTNSVKELLKTAVKMEYKGLAITDHEVLSAHLDAIRTVREMKKKGDM 64 Query: 559185 --GIKPIIGVEAYVTPGTDRRDKTRVKWRTDESQKRDDLSGGGAYTHMTLLSRNNTGMRN 559358 K I+G EAY+ D ++ R ++ SG + H +L+ + G Sbjct: 65 PEDFKLILGNEAYLV---DSLEEVRDNYK----------SGVTKFPHFLMLAMDPKGHEQ 111 Query: 559359 LFKASSYASLDSVFS----KWPRIDQDLLETYSEG---LIATTGCPSGEIQVRL-RLGQY 559514 L SS A +S ++ + P + +D+ E S+ +IATT C E+ + L ++ + Sbjct: 112 LRILSSQAWENSFYTGTMERVPTVKKDVEELLSKDPGHIIATTACLGSEVNIHLLKIKAF 171 Query: 559515 EEARAAAGKYR-------------EMFGKDNYYVELMDHGLSIEKRVTKDLIRLSKEMDI 559655 EE + + E+FGKD +++EL + K LI ++ D+ Sbjct: 172 EETGDSQSIKQHKLKIHEFITWCIEVFGKDKFFIELQPALSEEQIYCNKKLIDIANGYDL 231 Query: 559656 PLVATNDLHYTHESDAKAHEALLAIQSGSKLIEPTYDQGGSRFAFSGSGYYLKSGAEMRA 559835 ++ T D HY D H+A L + G + ++ Y+ ++++ E+ Sbjct: 232 QMIVTTDAHYLRPEDRAIHQAFLNAKDGEREVDSFYE-----------ACFVQNVDEIHE 280 Query: 559836 LFSEFP-----EACDNTLEIAEKCEVSFDTSANYMPKFPCP------------------- 559943 +A NT+ I E E +PK P Sbjct: 281 RMDYIDKEVIDQAIKNTMLIGEMIEDYTIEHEPIIPKMELPNFKLRHLFKPAYDQYEYIK 340 Query: 559944 ----PGEDETSWLVKEVQTGLEYRYPGGIPDDVRKQADY--------------ELDVIIS 560069 +++ +L+K ++ G E + ++ ++A + E+ ++ Sbjct: 341 KMSESADEQDRYLLKLIEDGFEEKLK---TSELTREAFHKILNRINVELGELWEISQKLN 397 Query: 560070 MGFPGYFLVVADFIN--WSKDNG--IRVGPGRGSGAGSMVAYAMRITDLDPLKHGLFFER 560237 Y++ V + IN W + G VG RGS AG +V Y + T ++P+++ L R Sbjct: 398 QSMSSYYITVREIINIIWDDECGGDSLVGAARGSAAGYLVNYLLDNTQINPMQYDLPHWR 457 Query: 560238 FLNPDRVSMPXXXXXXXXXXXGEVIDYVTRKYGDERVAMIVTYGTIKTKMALKDSARVLG 560417 ++ R +P +++ + ++GD+RV I T+GT +K AL+ + R LG Sbjct: 458 HIHKSRPDLPDIDIDTEGSKRQKILKALRERFGDKRVLQIATFGTEGSKSALQTACRGLG 517 Query: 560418 KPFSMGERLTKALPPAEMAKDIPLADIENAESKRYNEAGEFREFVDSDPDARETFETAKG 560597 + + L+ + P E + PL + + + +EF+ ETA Sbjct: 518 IDNDISQYLS-GMIPFERGSNWPLKHCFYGDKETGRK--PIKEFIREVEQYPNLKETALK 574 Query: 560598 IEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGLR 560777 IEGL + HAAGVI+ +D +M+ G ITQF+ SE +G +K D L + Sbjct: 575 IEGLTNKRSSHAAGVIIFNDEYTKSNAMMKT-PKGAYITQFNMGDSEAMGSVKFDLLTIE 633 Query: 560778 NLTIISDAVENIKANRDYD------------LGLEHLDLDDRGAYDLLSRGDTLGVFQXX 560921 L I ++ + N + + + + ++ +D +++ G+ + +FQ Sbjct: 634 ALDKIRVTLDQLIENNEIEWQGSLKETYNKYIHPDVIEYEDDKLWEMAGNGEIMDLFQFS 693 Query: 560922 XXXXXXXXXXMKPDNFEDISATIALYRPGPMGADSHTN-FALRKNGL----QEVTPIHPE 561086 +KP N + + T +L R G + + + KN L +E+T Sbjct: 694 TEVGHQSVVKVKPKNLLEAAVTNSLMRLMSDGEEQPVDTYVKYKNNLNKWYEEMTRYGLS 753 Query: 561087 LEE--PLEDILGTTYGLIIYQEQVMAIA--QKVAGYSLGQADILRRAMGKKKKSELDKQQ 561254 +E +E L YG+ QE VM + + +A + + +++ LR+++ KKK+ L + + Sbjct: 754 EKEIRVMERHLKDIYGVADTQEVVMQMVMDKDIANFDIKESNYLRKSIAKKKEDVLKEVE 813 Query: 561255 VGFFGGMKERGYSEAAAQALWDILLPFS-DYAFNKAHSAAYGLVSYWTAFLKAHYTAEY- 561428 FF KE G S+ +W++ Y+F+ H+ AY +++ L Y Y Sbjct: 814 ELFFKKGKEIGTSDNLLNYVWNVQFKRQFGYSFSLLHTLAYSIIALQELNLNYRYNPLYW 873 Query: 561429 -MAALLTSVG-----DNKD----------KLAIYLNECRRLGITVLPPDVNDSALHF-TP 561557 A L + G D KD K+A + R+ GI + PD+N + F T Sbjct: 874 NTACLTVNSGGIDTEDTKDNKKTAATNYGKVASAIGNIRQRGIKIDLPDINKADFGFRTD 933 Query: 561558 VGED-IRFGMGAVRNVGANVVDGIVEARGEKGAYTSFTDFLDKV-PSHVCNKRTIESLIK 561731 + + I FG+ + +G +V+ IV R Y+ F DF++++ S + K + LIK Sbjct: 934 INNNSILFGLKGMNGIGDDVIHHIVLNR----PYSDFNDFIERMFKSGIIKKGQVIQLIK 989 Query: 561732 AGGFDSLG 561755 G FDS G Sbjct: 990 GGCFDSFG 997 Score = 101 bits (251), Expect = 2e-19 Identities = 167/821 (20%), Positives = 320/821 (38%), Gaps = 112/821 (13%) Frame = +3 Query: 824373 IALFGADRLAVELSRDGTPDDDERLRHLGDLAQRTHLPIVASNSVHFATRAQWKSAQVRA 824552 I +FG D+ +EL + + + L D+A L ++ + H+ A +A Sbjct: 195 IEVFGKDKFFIELQPALSEEQIYCNKKLIDIANGYDLQMIVTTDAHYLRPED--RAIHQA 252 Query: 824553 SVRSRLSLDELAGWLPATANARIHTGEEMAARFPR----QALENAVAIGRECSFVLNSAR 824720 + ++ E+ + A + E + QA++N + IG Sbjct: 253 FLNAKDGEREVDSFYEACFVQNVDEIHERMDYIDKEVIDQAIKNTMLIGEMIEDYTIEHE 312 Query: 824721 PDLPRAPMPD--------------------DRGAEE---YLRELIEDRGARRYGTRAENP 824831 P +P+ +P+ A+E YL +LIED + T Sbjct: 313 PIIPKMELPNFKLRHLFKPAYDQYEYIKKMSESADEQDRYLLKLIEDGFEEKLKTSELTR 372 Query: 824832 KAWAQ-LDR---------EMDMIATLGFCGYFLIVYDITEF-----CHRVAIFCQGRGSA 824966 +A+ + L+R E+ Y++ V +I C ++ RGSA Sbjct: 373 EAFHKILNRINVELGELWEISQKLNQSMSSYYITVREIINIIWDDECGGDSLVGAARGSA 432 Query: 824967 ANSAVCYVLDITAVDAVKHELLFDRFLSPDRKGYPDIDIDIESGRREEVIQYVYDHFGRE 825146 A V Y+LD T ++ ++++L R + R PDIDID E +R+++++ + + FG + Sbjct: 433 AGYLVNYLLDNTQINPMQYDLPHWRHIHKSRPDLPDIDIDTEGSKRQKILKALRERFGDK 492 Query: 825147 RAAQVANVITYRAKSAIRDAAFSLGYEPGQQD------AFSKASNRWSTL------PEAE 825290 R Q+A T +KSA++ A LG + F + SN W E Sbjct: 493 RVLQIATFGTEGSKSALQTACRGLGIDNDISQYLSGMIPFERGSN-WPLKHCFYGDKETG 551 Query: 825291 DSPVPAPVLTI---------ADDLLGSPRHLGIHSGGMILADRPIGEVVPIEKATMGHRT 825443 P+ + + A + G H+ G+I+ + + + K G Sbjct: 552 RKPIKEFIREVEQYPNLKETALKIEGLTNKRSSHAAGVIIFNDEYTKSNAMMKTPKG-AY 610 Query: 825444 VVQWDKDDCAVMDLVKFDLLGLGMLTALHEMVDLVHRHT-----GELIERAH-------I 825587 + Q++ D M VKFDLL + L + +D + + G L E + I Sbjct: 611 ITQFNMGDSEAMGSVKFDLLTIEALDKIRVTLDQLIENNEIEWQGSLKETYNKYIHPDVI 670 Query: 825588 DDEDEAVYTMLQKADAVGVFQVESRAQLATLPRLRPETFYDLAVQVALIRPGPIQGGSVH 825767 + ED+ ++ M + + +FQ + ++ +++P+ + AV +L+R + G Sbjct: 671 EYEDDKLWEMAGNGEIMDLFQFSTEVGHQSVVKVKPKNLLEAAVTNSLMR--LMSDGEEQ 728 Query: 825768 P---YIRRRQGLDK----------VEYLHPLLRKSLAKTYGVPLFQEQLMQMAI--DVGG 825902 P Y++ + L+K E ++ + L YGV QE +MQM + D+ Sbjct: 729 PVDTYVKYKNNLNKWYEEMTRYGLSEKEIRVMERHLKDIYGVADTQEVVMQMVMDKDIAN 788 Query: 825903 FTGADADQLRQAMGSRRSEKRMTELAQKFQTGAAANGVDEETAESIFST-IAAFANYGFP 826079 F +++ LR+++ +++ E + E+ + F G + +++ Y F Sbjct: 789 FDIKESNYLRKSI-AKKKEDVLKEVEELFFKKGKEIGTSDNLLNYVWNVQFKRQFGYSFS 847 Query: 826080 ESHAISFANLVYQSAWFKYHHHAAF-----------------TVGLLRSQPMGFYSPQSL 826208 H ++++ + Q Y ++ + T ++ + S Sbjct: 848 LLHTLAYSIIALQELNLNYRYNPLYWNTACLTVNSGGIDTEDTKDNKKTAATNYGKVASA 907 Query: 826209 VADARRHGVRILPVDIRHSMAGSDLERLESDGTGDSGEFGIR----LGLDSVSHVGSFAE 826376 + + R+ G++I DI + G +D +S FG++ +G D + H Sbjct: 908 IGNIRQRGIKIDLPDINKADFG-----FRTDINNNSILFGLKGMNGIGDDVIHH------ 956 Query: 826377 VIVTERAKAPFTSVADLAERTGIGKQGLEGLATAGALSCFD 826499 IV R + F + ++GI K+G G CFD Sbjct: 957 -IVLNRPYSDFNDFIERMFKSGIIKKGQVIQLIKG--GCFD 994 >ref|NP_945090.1|gp59 Length = 429 Score = 171 bits (432), Expect = 2e-40 Identities = 113/384 (29%), Positives = 191/384 (49%), Gaps = 3/384 (0%) Frame = +3 Query: 32427 KSILAASSGNLVEWFDFYIYSFFSVYFADQFFVSGNQALSLMQAAGVFFIGFLMRPIGGY 32606 ++++A GN EWFDF YSFFSV A FF S + LSL+ + +GF MRPIGG Sbjct: 21 RAVIAVIVGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLLSVSTIGVGFFMRPIGGI 80 Query: 32607 VFGRAADRLGRKNSMLISILLMCAGSLLMXXXXXXXXXXXXXXXXXXVVRMIQGLAVGGE 32786 V G AD++GR+ ++ ++I LM AG+ ++ V R++QG + GGE Sbjct: 81 VIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGGE 140 Query: 32787 YGATATYMSEVATEGKRGFYSSFQYVTLIGGQLLASLLAVIMTHTLGTEQIEAGWWRLPF 32966 G Y+ E + G+Y+S+ ++ +LAS+LAV + L +QIE+ WR+PF Sbjct: 141 MGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWRIPF 200 Query: 32967 VIGAAAAVVSLWLRRGLEETTSAESRTNENSGSFREVLRHPRAFFVVLGITSVGSLVFYV 33146 ++G V +++R L + +E G V+ R+F + G +VF+ Sbjct: 201 LLGLGLGPVGIYIRSRLNDPGFP---ADERLGECAPVVEVVRSFSRE-ALVGFGLVVFWT 256 Query: 33147 FTTYMQKYLLLTNEGTAGEETFNKGSIADLMTICLLVFVFMQPAAGKLSDKIGRKNNMLI 33326 +Y+ + + T + + G IA L+ +++FV P G LSD GR+ + Sbjct: 257 VCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFV--TPLIGHLSDLFGRRWFLAG 314 Query: 33327 FVIGMIMLPIPMLSLIGSATSPVVAGLLILVTMAFISMYTSISGIVKA---EMFPAHIRG 33497 ++ I+ P+ +++ +A P + LL+ + F + S G + A +MFP + Sbjct: 315 ALLVAIVAAYPLFAMLNAA--PGLKTLLVF-QVVFGLVIASYEGPILAALSDMFPDGVLS 371 Query: 33498 IGVGFTYAVGNSIFGGSAEYVALW 33569 G+ +Y + FGG + + W Sbjct: 372 TGISISYNLAVITFGGFSAAIITW 395 Score = 154 bits (389), Expect = 2e-35 Identities = 107/422 (25%), Positives = 204/422 (48%), Gaps = 4/422 (0%) Frame = +2 Query: 1531082 KSTQTKSTPMLKRAAASAYLGSVIEYYDFFVYSVCAALVFKDVFFSNLTPAIGTLASLAT 1531261 ++ + S+ +RA + +G+ E++DF YS + ++ K +FF + + L S++T Sbjct: 9 EAAPSASSDTHRRAVIAVIVGNGFEWFDFISYSFFSVIIAK-LFFPSTDDNLSLLLSVST 67 Query: 1531262 FATGYLARPLGGIIFGHFGDKLGRKRMLIVSMFTIGIASTAIGLLPTYDQAGLIAPVLLI 1531441 G+ RP+GGI+ G DK+GR+ L V++ + + IG PTY AGL AP++++ Sbjct: 68 IGVGFFMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIV 127 Query: 1531442 LIRVIQGVAIGGEWGGAMLMSAEHSTSNR-GFWASFTSAGAPTGQLVSALVIAGTLAAMG 1531618 + R++QG + GGE GGA E + R G++ S+ A ++++++ + + Sbjct: 128 VARLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLD 187 Query: 1531619 PDAFIAWGWRLPFLASVLLLVIGVIVRSAVDESPEFLAAKKRTPKAGIPILATLRKQPLT 1531798 +WGWR+PFL + L +G+ +RS +++ P F A ++ A P++ +R Sbjct: 188 EQQIESWGWRIPFLLGLGLGPVGIYIRSRLND-PGFPADERLGECA--PVVEVVRSFSRE 244 Query: 1531799 LLLAVGVGLSAFMFQGLLTTYSIAYGVQI-GIERQTVLNALXXXXXXXXXXXXXXXRLSD 1531975 L+ G+ + + +L Y Y ++ + T A+ LSD Sbjct: 245 ALVGFGLVVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSD 304 Query: 1531976 TIGRRPLVIAGAVFIA-VWGFALFPLLETKNGIIITIGMVVGQGIIHPMIYGPLAGLYSE 1532152 GRR +AGA+ +A V + LF +L G+ + V G++ GP+ S+ Sbjct: 305 LFGRR-WFLAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSD 363 Query: 1532153 LFDTEHRYTGASLGYQIAGIG-AGISPVLFAAIMSSTGSPSTIPLSIVLLVVAAISILCI 1532329 +F TG S+ Y +A I G S + +++T + ++ + ++ + + Sbjct: 364 MFPDGVLSTGISISYNLAVITFGGFSAAIITWAIATTHNNLAPAFYVIAAAIVSLISVSL 423 Query: 1532330 WR 1532335 W+ Sbjct: 424 WQ 425 Score = 89.0 bits (219), Expect = 1e-15 Identities = 48/155 (30%), Positives = 72/155 (46%) Frame = -2 Query: 1466021 PRRFLDGKKRVLASAFAGTTIEWYDFYLYGTAAALIFNVQFFPXXXXXXXXXXXXXXXXX 1465842 P D +R + + G EW+DF Y + +I + FFP Sbjct: 12 PSASSDTHRRAVIAVIVGNGFEWFDFISYSFFSVIIAKL-FFPSTDDNLSLLLSVSTIGV 70 Query: 1465841 XXXARPLGGIIAGHLGDRVGRKALLVVSLLSMGIASTLIGLVPNFNTIGWWAAAALVVLR 1465662 RP+GGI+ G + D+VGR+A L V++ M + +IG P + G A +VV R Sbjct: 71 GFFMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVAR 130 Query: 1465661 IVQGLSAGAEWGGSALLSVEHAPPRKRGLFGSFTQ 1465557 ++QG SAG E GG+ E P + G + S+ Q Sbjct: 131 LLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQ 165 Score = 86.3 bits (212), Expect = 7e-15 Identities = 99/413 (23%), Positives = 165/413 (39%), Gaps = 31/413 (7%) Frame = -1 Query: 1463283 MSAATPKTTAEATSAPAYKRKALFAAAVGYGLDGFDLLILSFALGGIIATFGLSDVEAG- 1463107 M +T A +++ R+A+ A VG G + FD + SF IIA + Sbjct: 1 MQTSTYAREAAPSASSDTHRRAVIAVIVGNGFEWFDFISYSF-FSVIIAKLFFPSTDDNL 59 Query: 1463106 ----SLSTITL--FGAVLGGIIFGSLADRYGRVRVLTWTVLIFAVFTGLSSIAQGYWD-- 1462951 S+STI + F +GGI+ G +AD+ GR LT T+ + T + A Y D Sbjct: 60 SLLLSVSTIGVGFFMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAG 119 Query: 1462950 ------MAAYRFXXXXXXXXXXXXGMALAAEAVPANQRARATSWV--GVGFQI------G 1462813 + R A E VPA + TSW+ +GF I Sbjct: 120 LGAPLMIVVARLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLA 179 Query: 1462812 VFAAAIVSAPVIALWGWRALFVIGLFPAIFAFVIRRGVQEPDKFVQSQRGQTAGESGDSA 1462633 VF + I WGWR F++GL IR + +P F +R GE Sbjct: 180 VFIVKCLDEQQIESWGWRIPFLLGLGLGPVGIYIRSRLNDPG-FPADER---LGECAPVV 235 Query: 1462632 ELPTFGAKIRALVKDKATVKITFALIVLSTVQNFGYFGIIAWLPNYLSEKMDLGVTKGSL 1462453 E+ +R+ ++ + F L+V TV + + ++ ++P Y S+ + L + G + Sbjct: 236 EV------VRSFSRE---ALVGFGLVVFWTVCS---YVLLFYIPTYASKVLKLPSSTGFI 283 Query: 1462452 WTAVTVIGMLAGILIFGQVADRLGRRPAFWIFQAGAIVSIL----VYSQMTDPSALLIXX 1462285 V +L + G ++D GRR W +V+I+ +++ + L Sbjct: 284 AVLVGASIVLFVTPLIGHLSDLFGRR---WFLAGALLVAIVAAYPLFAMLNAAPGLKTLL 340 Query: 1462284 XXXXXXXXXXXXGHGALLA---EMYPTQVRATAQNVVFNIG-RALGGLAPVVI 1462138 G +LA +M+P V +T ++ +N+ GG + +I Sbjct: 341 VFQVVFGLVIASYEGPILAALSDMFPDGVLSTGISISYNLAVITFGGFSAAII 393 Score = 64.7 bits (156), Expect = 2e-08 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%) Frame = -1 Query: 1465485 APLRDVLTKHPRVLLVTIGLRLAQNSVFYLITVYMLSYLAEN-RDDSTAGVTAVMIASAI 1465309 AP+ +V+ R LV GL + Y++ Y+ +Y ++ + S+ G AV++ ++I Sbjct: 232 APVVEVVRSFSREALVGFGLVVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASI 291 Query: 1465308 GLFTGPLWGWISDKVGRKRVTIGGIIGVAAFGWIFFAFLDAGP--LAFLPIVVILGMNLA 1465135 LF PL G +SD GR+ G ++ + FA L+A P L V+ G+ +A Sbjct: 292 VLFVTPLIGHLSDLFGRRWFLAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIA 351 Query: 1465134 HDAIYGPQAAWFAEQFPIEIRYSGVNMGYQLGTVIGGG 1465021 + GP A ++ FP + +G+++ Y L + GG Sbjct: 352 --SYEGPILAALSDMFPDGVLSTGISISYNLAVITFGG 387 >ref|YP_024516.1|putative DNA polymerase Length = 1072 Score = 152 bits (385), Expect = 6e-35 Identities = 104/351 (29%), Positives = 181/351 (51%), Gaps = 22/351 (6%) Frame = +1 Query: 754780 KTKRTKTGYTTDAEALAELFIKTEHPFLQHLLAYRDS--TKLKQTVVGLLKTVAEDGR-I 754950 KT + GY AL L +K + L LL Y S TK LL + + R + Sbjct: 670 KTDKKAIGY-----ALDNLELKDDVKELLELLKYHASMQTKRNSFTKKLLNMINKQKRTL 724 Query: 754951 HTTYQQTVAATGRLSSLDPNLQNIPVRTESGRR------IREIFIADPHVDDARLLTADY 755112 H ++ +T T RLSS +PNLQN+P T + I+ F++ ++ LL +DY Sbjct: 725 HGSFSETGTETSRLSSSNPNLQNLPAHTSDVNKFDYKHPIKRSFVS--RFENGVLLGSDY 782 Query: 755113 SQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSKVKAMSYGLVY 755292 S +EMRI+ + D ++Q+F +GED+H S V+ ++EV R KA+++GL + Sbjct: 783 SALEMRIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQATKAVNFGLAF 842 Query: 755293 GLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQARANGYTETIMGRRRYLP 755472 G S + + + + V EA+ + E+YF+ +VK +D + E + GY +T+ G RR++ Sbjct: 843 GESPFSFAGKNNMEVSEAEEIFEKYFQTKPSVKTSIDNVHEFVQQYGYVDTMHGHRRFIR 902 Query: 755473 ALHSDRRQLRDMAERAALNAPIQGSAADIMKIAMLKVSDRLGDH--KSTVLLQVHDEIIV 755646 + S +++++ R + N IQGS + + +++ + D + KS V+ VHD I++ Sbjct: 903 SAQSTDKKIKNEGLRQSFNTIIQGSGSFLTNMSLTYLDDFIQSRNLKSKVIATVHDSILI 962 Query: 755647 DVHPEE---IDSVTQIVTEEMGSAF--------ELDVPLDVNVGTGTSWHD 755766 D PEE + VT + E + F E+ P++ ++ G +++D Sbjct: 963 DCPPEEAKIMAKVTIHIMENLPFDFLKAEIDGKEVQYPIEADMEIGLNYND 1013 >ref|NP_852498.1|DNA polymerase I Length = 802 Score = 149 bits (377), Expect = 5e-34 Identities = 139/526 (26%), Positives = 216/526 (41%), Gaps = 79/526 (15%) Frame = +1 Query: 754420 DAESDSGQLALDLESDQTAQTHGHRAAALLEVHDILAAKIDEANMSQVYRDIELPLVPVL 754599 DA G L +SD Q + E +AA+I + + IE+P V+ Sbjct: 276 DASKGEGLLYSAEDSDYAVQHY--------EYWSQIAAQI--SRYEEWLHKIEMPFTRVI 325 Query: 754600 ARMELAGIAVDEAGLSGLIDEFTKQANASAE----LAYEAIGHEVNLGSP---KQLQTVL 754758 ME G+ D + E +AE +A E ++N G ++++++ Sbjct: 326 GLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFNIDINTGKSGKTNEVKSLM 385 Query: 754759 FDELDMPKTKRTKTGYTTDAEALAELFIKTE----------------------------- 754851 FD L +P K KTG + D EAL ++ E Sbjct: 386 FDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKYLGVSLPENWENIDPEKDP 445 Query: 754852 -----------------HPFLQHLLAYRDSTKLKQTVVGLLKTVA---------EDGRIH 754953 HP+ + L D K Q LL + GRIH Sbjct: 446 TLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQKYTTLLSSHIIGREKYLNFMSGRIH 505 Query: 754954 TTYQQTVAATGRLSSLDPNLQNIPVRTESGRRIREIFIADPHVDDARLLTADYSQIEMRI 755133 Y TGRL+S +PN QN+P +IR F+ P L D+S E+R+ Sbjct: 506 AGYSP-FTETGRLNSFNPNGQNVPRPDNDEFKIRNFFVPKP---GKILFFIDFSGFELRL 561 Query: 755134 MAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSKVKAMSYGLVYGLSAYGL 755313 MA SGD + + F G D+H S + G E+ R+ KA ++G+ YG + + L Sbjct: 562 MAWKSGDEVMTELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHAL 621 Query: 755314 S------RQLAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQARANGYTETIMGRRRYLPA 755475 + +DE ++ + + +Y +IV +AR GY +TI G R LP Sbjct: 622 QFTFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIYGYMRLLPG 681 Query: 755476 LHSDRRQLRDMAERAALNAPIQGSAADIMKIAMLKVSDRLGDHK-------STVLLQVHD 755634 ++S R+ R AER A N P+QGSAADIMK ++ + +G + + ++ Q+HD Sbjct: 682 INSANRRDRGSAERQAANTPVQGSAADIMKKVQNEIYESIGKQEGVLSHGSADMIAQIHD 741 Query: 755635 EII--VDVHPEEIDSVTQIVTE--EMGSAFELDVPLDVNVGTGTSW 755760 EII +D PE + +V + + + E VP++ G W Sbjct: 742 EIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEGSVGYRW 787 >ref|NP_944043.1|thymidine kinase Length = 199 Score = 144 bits (362), Expect = 3e-32 Identities = 83/201 (41%), Positives = 114/201 (56%), Gaps = 1/201 (0%) Frame = -3 Query: 1256500 VAKLYFRYGAMNSGKSTALLQAAFNYEERGQRVLLAKPHIDTKGAGEIVSRLGVTREVDF 1256321 +AKL+F + +MN GKST LLQ AFNY ER Q VLL KP DT+ G I SR+G+ RE Sbjct: 1 MAKLFFTHASMNVGKSTQLLQVAFNYNERNQNVLLYKPAFDTRTEGTIGSRIGIQRECR- 59 Query: 1256320 LIPAGSDVETIYREHADYVDHDALLESIDTPKASVACLLIDEAQFLEPLQVDSLMRIATA 1256141 + ++ T+ + ++ + +AC+L+DEAQFL QV L + Sbjct: 60 CVHVNENMFTMIEK--------------ESKLSEIACVLVDEAQFLTEKQVWELSDVVDK 105 Query: 1256140 ISVPVMCYGIRTDFRTRAFPGSARLLEIAHTLEELKTICRCGRKAMFNGRLVD-GQFIFD 1255964 + +PVMCYG+RTDF FPGS LL I+ + +L IC CGRK+ R+ D G I Sbjct: 106 LDIPVMCYGLRTDFLGNLFPGSRALLSISDEIRQLSGICDCGRKSCMVARVDDNGNVIRR 165 Query: 1255963 GDQVAIDGNAVTYESLCPRCY 1255901 G+Q+ I G Y S C +C+ Sbjct: 166 GEQICI-GAEQRYISFCRKCW 185 >ref|NP_861801.1|Tk thymidine kinase Length = 193 Score = 142 bits (358), Expect = 8e-32 Identities = 88/207 (42%), Positives = 119/207 (57%), Gaps = 2/207 (0%) Frame = -3 Query: 1256500 VAKLYFRYGAMNSGKSTALLQAAFNYEERGQRVLLAKPHIDTKGA-GEIVSRLGVTREVD 1256324 +A L F Y AMN+GKS +LL AA NY+ERG VL+ KP IDT+ + GEIVSR+G+ ++ + Sbjct: 1 MASLIFTYAAMNAGKSASLLTAAHNYKERGMGVLVLKPAIDTRDSKGEIVSRIGIRQDAN 60 Query: 1256323 FLIPAGSDVETIYREHADYVDHDALLESIDTPKASVACLLIDEAQFLEPLQVDSLMRIAT 1256144 +I D+ Y+ A D + C+ +DEAQFL +V L RI Sbjct: 61 -IITKDMDIFEFYKWAAAQKD--------------IHCVFVDEAQFLTTEKVYQLSRIVD 105 Query: 1256143 AISVPVMCYGIRTDFRTRAFPGSARLLEIAHTLEELKTICRCGRKAMFNGRLV-DGQFIF 1255967 +VPVM YG+RTDF+ F GS L+ IA L ELK +C CG+KA R+ DG I Sbjct: 106 VYNVPVMAYGLRTDFKGNLFEGSQALMAIADKLVELKGVCHCGKKATMVARVTEDGLPIT 165 Query: 1255966 DGDQVAIDGNAVTYESLCPRCYLQYSG 1255886 DG Q+ I G+ Y SLC + + +G Sbjct: 166 DGSQIEI-GDTDRYVSLCRKHWNDLTG 191 Score = 79.0 bits (193), Expect = 1e-12 Identities = 58/184 (31%), Positives = 85/184 (46%), Gaps = 5/184 (2%) Frame = -2 Query: 1314911 MFSGKSEELMRRVRRAKIAGVNVLVLSHSLDTRSTLSAITSHTGV----NIPAVPVGDVE 1314744 M +GKS L+ K G+ VLVL ++DTR + I S G+ NI + E Sbjct: 11 MNAGKSASLLTAAHNYKERGMGVLVLKPAIDTRDSKGEIVSRIGIRQDANIITKDMDIFE 70 Query: 1314743 SLAEVAHAEDYDLIAIDEAQFFGPDLVATVFELVE-RGATVIVEGLSVTFDGDPFEPMPT 1314567 A +D + +DEAQF + V + +V+ V+ GL F G+ FE Sbjct: 71 FYKWAAAQKDIHCVFVDEAQFLTTEKVYQLSRIVDVYNVPVMAYGLRTDFKGNLFEGSQA 130 Query: 1314566 FMAVAEDVLKLTAVCTICGRDAVFHQRVGAPGHTDDESDAPATDIDASHIGGLEAYVARC 1314387 MA+A+ +++L VC CG+ A RV E P TD IG + YV+ C Sbjct: 131 LMAIADKLVELKGVCH-CGKKATMVARV-------TEDGLPITDGSQIEIGDTDRYVSLC 182 Query: 1314386 REHF 1314375 R+H+ Sbjct: 183 RKHW 186 >ref|NP_049719.1|Tk thymidine kinase Length = 193 Score = 140 bits (353), Expect = 3e-31 Identities = 86/198 (43%), Positives = 118/198 (59%), Gaps = 2/198 (1%) Frame = -3 Query: 1256500 VAKLYFRYGAMNSGKSTALLQAAFNYEERGQRVLLAKPHIDTKGAG-EIVSRLGVTREVD 1256324 +A L F Y AMN+GKS +LL AA NY+ERG VL+ KP IDT+ + E+VSR+G+ +E + Sbjct: 1 MASLIFTYAAMNAGKSASLLIAAHNYKERGMSVLVLKPAIDTRDSVCEVVSRIGIKQEAN 60 Query: 1256323 FLIPAGSDVETIYREHADYVDHDALLESIDTPKASVACLLIDEAQFLEPLQVDSLMRIAT 1256144 +I D+ Y+ D + C+ +DEAQFL+ QV L RI Sbjct: 61 -IITDDMDIFEFYKWAEAQKD--------------IHCVFVDEAQFLKTEQVHQLSRIVD 105 Query: 1256143 AISVPVMCYGIRTDFRTRAFPGSARLLEIAHTLEELKTICRCGRKAMFNGRLV-DGQFIF 1255967 +VPVM YG+RTDF + F GS LL IA L ELK +C CG+KA+ RL+ DG + Sbjct: 106 TYNVPVMAYGLRTDFAGKLFEGSKELLAIADKLIELKAVCHCGKKAIMTARLMEDGTPVK 165 Query: 1255966 DGDQVAIDGNAVTYESLC 1255913 +G+Q+ I G+ + Y SLC Sbjct: 166 EGNQICI-GDEI-YVSLC 181 Score = 70.9 bits (172), Expect = 3e-10 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 5/184 (2%) Frame = -2 Query: 1314911 MFSGKSEELMRRVRRAKIAGVNVLVLSHSLDTRSTLSAITSHTGVNIPAVPVGDVESLAE 1314732 M +GKS L+ K G++VLVL ++DTR ++ + S G+ A + D + E Sbjct: 11 MNAGKSASLLIAAHNYKERGMSVLVLKPAIDTRDSVCEVVSRIGIKQEANIITDDMDIFE 70 Query: 1314731 V---AHAE-DYDLIAIDEAQFFGPDLVATVFELVER-GATVIVEGLSVTFDGDPFEPMPT 1314567 A A+ D + +DEAQF + V + +V+ V+ GL F G FE Sbjct: 71 FYKWAEAQKDIHCVFVDEAQFLKTEQVHQLSRIVDTYNVPVMAYGLRTDFAGKLFEGSKE 130 Query: 1314566 FMAVAEDVLKLTAVCTICGRDAVFHQRVGAPGHTDDESDAPATDIDASHIGGLEAYVARC 1314387 +A+A+ +++L AVC CG+ A+ R+ E P + + IG E YV+ C Sbjct: 131 LLAIADKLIELKAVCH-CGKKAIMTARL-------MEDGTPVKEGNQICIGD-EIYVSLC 181 Query: 1314386 REHF 1314375 R+H+ Sbjct: 182 RKHW 185 >ref|NP_569753.1|putative tape-measure protein Length = 1229 Score = 140 bits (352), Expect = 4e-31 Identities = 159/624 (25%), Positives = 252/624 (40%), Gaps = 68/624 (10%) Frame = -1 Query: 57786 AAGTATSKWSSVGSTFQNIGSKISNVGGSLTKXXXXXXXXXXXXXXXXXXXXGWGRLRSI 57607 +AG ++ + G +GSKIS GS + +GRL I Sbjct: 90 SAGIDSALSVAGGMAIAKVGSKISGALGSAMRAG-------------------FGRLTQI 130 Query: 57606 DSANAQLKGLGYSAKDVENISGQVATALEGGMMTLGEGTRVAAGGLAAGVEQGKELEKYI 57427 DSA +LK LG A V ++ A++G L AA +AAG++ G++L KY+ Sbjct: 131 DSAQFKLKSLGNEASTVASVMQDATAAVKGTAFGLDAAATTAASAVAAGIKPGEQLTKYL 190 Query: 57426 GLVDAAAIGMNTSVDETAMIFNRVQGSGKVMTEELQMVEQRMPGFSNALQEHIGVASDDE 57247 L A TS+DE IFN+VQGSGK MT EL+ + R LQ+ V S D Sbjct: 191 SLTADTAAIAGTSLDEMGSIFNKVQGSGKAMTLELRQLADRGLPIFQWLQDEFHV-SGDA 249 Query: 57246 FKKMVTAGEVGSDAFLETMDTFAGDMAKEHAKSFDGLVDLAKAYVGQIGEAMLGGVFEQS 57067 + MV G V S+ F ++ G AK SF G + KA + + G ++G +F + Sbjct: 250 LQDMVAQGAVDSETFRRVIEKNIGGAAKGMGGSFVGSMANMKAAMSRFGAEVMGPIF-KG 308 Query: 57066 KDSIAEFVDWLSDPGVQAKAAELGK--TIGDVFSKVLG----------VVKNVITWFMGL 56923 +A + + D A A +G T+ + ++K + +K VI +F + Sbjct: 309 VQPLATGLMGVFDKLTAAIKAPMGNVTTVVEQWAKGMSDKMQAWADGDGMKKVIDFFGRV 368 Query: 56922 PAPIQKTXXXXXXXXXXXXXXXXXXGTMASTIGTLITTFGAIAGVIAKI----------P 56773 I+ + ++ T ++F AI +A I P Sbjct: 369 GDSIK--ALATGGDSGKLGEIVQSFKNIGPSLQTAGSSFAAIGATLAAIGPEVLSSVLVP 426 Query: 56772 APLNILGGLFRMIS-------PLLGLLKVGL---------MAVG----GAMKALW----- 56668 A L + G + ++ P + L+V L +A+G G A+W Sbjct: 427 A-LQLAAGALKFMADNASWAVPTIVGLRVALFAHQAVLTAVAIGTKAYGVAMAVWSGITK 485 Query: 56667 ----------LTMMANPXXXXXXXXXXXXXXXVWFFTQTETGKKMWSAFMDWLGQAWEWI 56518 + + ANP FFT+TE G+++WS + W I Sbjct: 486 AATAAQWLFNVALTANPIGLIIAAVVGLAVAIWAFFTKTEVGRQLWS-------KIWGGI 538 Query: 56517 KXXXXXXXXXXXXXXXXAWNWVKDTSV----AIWNGFISWIVGLWNGIIGTAKAVFLGIG 56350 K W K+T+V A W+ + + LW+ +I + V+ GI Sbjct: 539 KAAVHVFV-----------EWFKNTAVPFIKAAWDMIAAGAMWLWHNVI---EPVWEGIK 584 Query: 56349 TAIITAWNWIKTKTSDVWNAIINWIKDTWNKIITT-------ISDAVNKVKNWISDAWTM 56191 TAI A ++IK + W AI ++I+D W ++ T I D V N++ + Sbjct: 585 TAIKFAIDFIKAEI-QAWVAIFHFIEDVWRGLVDTAHAVWQGIVDKFTGVVNFVKELPGK 643 Query: 56190 IKTMTAKLWNGIKMAIARAIVSAV 56119 I + +W+GIK A I S + Sbjct: 644 ITSAAKGMWDGIKDAFKSMINSLI 667 Score = 88.6 bits (218), Expect = 1e-15 Identities = 48/111 (43%), Positives = 65/111 (58%), Gaps = 7/111 (6%) Frame = +3 Query: 254490 ESGLQPNTVNGYRAVCAKFPEVKTYGGVRPGSGTSDHYTGGAVDIMI------DG-STAD 254648 E LQPN++ R V FP++KT GG R DH +G A+DIMI DG + D Sbjct: 774 EQNLQPNSILISRLVSKLFPQIKTIGGWRSQDAYPDHPSGRALDIMIPNYSSKDGVALGD 833 Query: 254649 RIAEYLIQNSGALDVKYVIWKQRIWQPGSGWSSMEDRGSPTDNHMDHVHAS 254801 + ++L++N+ AL V+Y IW+Q + MEDRGS T NHMDHVH + Sbjct: 834 SVMQFLMKNADALGVEYTIWRQTYRNTSGQSNLMEDRGSDTQNHMDHVHVT 884 Score = 74.7 bits (182), Expect = 2e-11 Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 2/135 (1%) Frame = +1 Query: 1796914 GEAIAGGTVTAQKKKKLPLGDVKPHVQEAAEVIYDEYDGITGVGGYRSGSTSRDPNGHPV 1797093 G +A G + Q +++P+ + ++ + I +GG+RS D HP Sbjct: 764 GGGLAAGLASEQ--------NLQPNSILISRLVSKLFPQIKTIGGWRSQDAYPD---HPS 812 Query: 1797094 GLAVDFMVP--LNIDGKALGDDIAKFVIDNHEALNIKYVIWYQRIYNVERADEGWRKMPD 1797267 G A+D M+P + DG ALGD + +F++ N +AL ++Y IW Q N M D Sbjct: 813 GRALDIMIPNYSSKDGVALGDSVMQFLMKNADALGVEYTIWRQTYRNTSGQS---NLMED 869 Query: 1797268 RGGDTQNHKDHPHVS 1797312 RG DTQNH DH HV+ Sbjct: 870 RGSDTQNHMDHVHVT 884 >ref|NP_597931.1|PhoH-like protein Length = 384 Score = 138 bits (348), Expect = 1e-30 Identities = 78/210 (37%), Positives = 117/210 (55%), Gaps = 1/210 (0%) Frame = +3 Query: 665652 STRGKSIRPKTMGQHDYVKAIRNHTITFGIGPAGTGKTYLAMAMAINALQHKEVSRIILT 665831 S + + P+T Q D + A++ F +GPAGTGKTY+ A + KE+ +I++T Sbjct: 172 SKKTSGLVPRTDKQKDLIDALKTSRQVFILGPAGTGKTYVTATYASDLYTTKEIDKIVIT 231 Query: 665832 RPAVEAGESLGYLPGTLNEKIDPYVRPLYDALHDMVDPESIPLLIETGTIEVAPLAYMRG 666011 RP V G+ LG+L G L EK P+ P+ D L + ++ I+ G IE+APLA MRG Sbjct: 232 RPHVAVGKELGFLKGDLTEKTMPWALPVLDVLEKHLGKGAVETGIKNGNIEMAPLALMRG 291 Query: 666012 RTLNDAFIILDEAQNTTGEQMKMFLTRLGFGARMVVTGDVSQIDLPGKTRSGLNVVQDIL 666191 R+ ++AFII+DE QN + ++KM LTR+G G +V+ GD Q DL K GL+ V + Sbjct: 292 RSFDNAFIIVDETQNISTHELKMLLTRVGEGTTIVLNGDAQQSDL--KEADGLSKVIHLA 349 Query: 666192 TGIE-DLKFCHLGSKDVVRHSLVTKIVDAY 666278 + + G D+VR + V + Sbjct: 350 KKHQLPVPIIEFGVDDIVRSDITAMWVRTF 379 Score = 92.0 bits (227), Expect = 1e-16 Identities = 64/185 (34%), Positives = 97/185 (52%) Frame = -1 Query: 1358667 GVHGRSAEQRVAIDMLLDDALGIVSLGGRAGTGKSALALMAGLQKVLEENKHSKIMVFRP 1358488 G+ R+ +Q+ ID L V + G AGTGK+ + + + KI++ RP Sbjct: 177 GLVPRTDKQKDLIDALKTSRQ--VFILGPAGTGKTYVTATYA-SDLYTTKEIDKIVITRP 233 Query: 1358487 IYAVGGQSLGFLPGSEGEKMNPWAEAVFDTLGALVSKNVIEEVMNRDLLDVLPLTHIRGR 1358308 AVG + LGFL G EK PWA V D L + K +E + +++ PL +RGR Sbjct: 234 HVAVG-KELGFLKGDLTEKTMPWALPVLDVLEKHLGKGAVETGIKNGNIEMAPLALMRGR 292 Query: 1358307 SLHDAFVIVDEAQSLERNVLLTVLSRIGMNSKVVLTHDVAQRDNLRVGRHDGVAAVIEKL 1358128 S +AF+IVDE Q++ + L +L+R+G + +VL D Q D + DG++ VI Sbjct: 293 SFDNAFIIVDETQNISTHELKMLLTRVGEGTTIVLNGDAQQSD---LKEADGLSKVIHLA 349 Query: 1358127 KGHEL 1358113 K H+L Sbjct: 350 KKHQL 354 >ref|NP_046670.1|similar to Escherichia coli YedG Length = 224 Score = 135 bits (340), Expect = 1e-29 Identities = 76/228 (33%), Positives = 119/228 (52%), Gaps = 3/228 (1%) Frame = -1 Query: 1681683 MCGRLNMSLDPADLADELRLDVI--SYDYTPRYNVPPGSFVPIVVERLDDSGQLTRRLET 1681510 MCGR + + D+ ++ +D +Y P YNV P + ++ D S RL Sbjct: 1 MCGRFTLFSEFDDIIEQFNIDQFLPEGEYHPSYNVAPSQNILTIIN--DGSNN---RLGK 55 Query: 1681509 ASWGLVPGWAKDTKIGFKAFNARSETVLEKPMFRQSIKRRRCALPIPGYYEWETTE-AGK 1681333 WGL+P WAKD KIG+K NAR+ET+ EKP FR+ + +RC +P +YEW+ + K Sbjct: 56 LRWGLIPPWAKDEKIGYKMINARAETLSEKPSFRKPLVSKRCIIPADSFYEWKRLDPKTK 115 Query: 1681332 QPWMMSAAGADPLFMAGLFEFWKQPDHSWLVSTTILTMEAAGHLQDVHHRMPVFLERGAV 1681153 P + ++ AGL+E W P+ + L + TI+T + ++D+H RMPV L Sbjct: 116 IPMRIKLKSSNLFAFAGLYEKWNTPEGNPLYTCTIITTKPNELMEDIHDRMPVILTDENE 175 Query: 1681152 DGWIDPAVPSADVPPLLESTLEQVDPASVTRHKVGKSVGNVRNDGPEL 1681009 W++P P L+S L+ D + ++V V + +N+ PEL Sbjct: 176 KEWLNPKNTD---PDYLQSLLQPYDADDMEAYQVSSLVNSPKNNSPEL 220 >ref|YP_006950.1|DNA polymerase Length = 855 Score = 135 bits (339), Expect = 1e-29 Identities = 127/455 (27%), Positives = 215/455 (47%), Gaps = 46/455 (10%) Frame = +1 Query: 754501 ALLEVHDILAAKIDE-ANMSQVYRDIELPLVPVLARMELAGIAVDEAGLSGLIDEFTKQA 754677 A + +H+ KI++ + +Y D+ +P L R+E G+ + L + T Sbjct: 319 ATIRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNL 378 Query: 754678 NASAELAY---------EAIGHEVNLGSPKQLQTVLFDELDM-PKTKRTKTGY-TTDAEA 754824 N + E Y + N S KQL+ +LFD + + P K T TG +TDAEA Sbjct: 379 NKAREKLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEA 438 Query: 754825 LAELFIKTEHPFLQHLLAYRDSTKLKQTVVG-LLKTVAEDGRIHTTYQQTVAATGRLSSL 755001 L EL T+HP + LL R TKL T V +L ++ DG I T + + + +GRLSS Sbjct: 439 LNEL--ATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSS 496 Query: 755002 DP-NLQNIPVRTESGRRIREIFIADPHVDDARLLTADYSQIEMRIMAHLSGDAALIQAFK 755178 NLQ +P R ES I+ +A P R++ D + E+ A LSGD + Q F Sbjct: 497 GKLNLQQLP-RDES--IIKGCVVAPPGY---RVIAWDLTTAEVYYAAVLSGDRNMQQVFI 550 Query: 755179 DGE-------DLHSYVGSKVFGVGIDEVD-----SAMRSKVKAMSYGLVYGLS----AYG 755310 + D HS + VF + + D A+R KA+++G++YG A+ Sbjct: 551 NMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGILYGSGPAKVAHS 610 Query: 755311 LSRQLA------------IGVDEAKNLMEQYFERFGAVKDYLDEIVEQARANGYTETIMG 755454 ++ L V +AK +E YF +F +K ++D+ +Q + +G+ + G Sbjct: 611 VNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHGFIYSHFG 670 Query: 755455 RRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIAMLKVSDR---LG-DHKSTVLL 755622 R+R L +HS+ R ++ R+ NA IQ +++D + + + + LG + + +++ Sbjct: 671 RKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGAVDADNEIISLGLEQEMKIVM 730 Query: 755623 QVHDEIIVDVHPEEIDSVTQIVTEEMGSAFELDVP 755727 VHD ++ V + ID +I+ + + +P Sbjct: 731 LVHDSVVAIVREDLIDQYNEILIRNIQKDRGISIP 765 >ref|YP_006926.1|putative PhoH-like protein Length = 250 Score = 132 bits (332), Expect = 9e-29 Identities = 72/214 (33%), Positives = 118/214 (55%), Gaps = 2/214 (0%) Frame = +3 Query: 665610 EGQAASAVMGTNILSTRGKSIRPKTMGQHDYVKAIRNHTITFGIGPAGTGKTYLAMAMAI 665789 E A + + KS+ K Q Y+ I+N+T+T GIG GTGKT++ +A Sbjct: 22 ENNVIQADFSNDYANPVAKSLVGKNREQKSYINMIKNNTVTVGIGEPGTGKTFIPSVLAA 81 Query: 665790 NALQ--HKEVSRIILTRPAVEAGESLGYLPGTLNEKIDPYVRPLYDALHDMVDPESIPLL 665963 L H ++ ++IL RP G+SLG LPG L EK++P++ P+ D + + + Sbjct: 82 QELVDIHSDIEQVILVRPNEPLGKSLGMLPGDLAEKLEPWLEPIADGMKWAIGDHAYKGY 141 Query: 665964 IETGTIEVAPLAYMRGRTLNDAFIILDEAQNTTGEQMKMFLTRLGFGARMVVTGDVSQID 666143 +E I+ + + RGRT N++++I+DEAQN + E M LTR+G R+++ GD++Q D Sbjct: 142 VERQKIKFLAIEHARGRTFNNSYVIVDEAQNISVEAMVCLLTRVGQDCRLIICGDIAQKD 201 Query: 666144 LPGKTRSGLNVVQDILTGIEDLKFCHLGSKDVVR 666245 + G SGL ++ ++ E+ F + D VR Sbjct: 202 IKGD--SGLALLMEVYEKYENAPFSMIELIDNVR 233 Score = 94.4 bits (233), Expect = 3e-17 Identities = 57/210 (27%), Positives = 121/210 (57%), Gaps = 4/210 (1%) Frame = -1 Query: 1358658 GRSAEQRVAIDMLLDDALGIVSLG-GRAGTGKSALALMAGLQKVLEENKH-SKIMVFRPI 1358485 G++ EQ+ I+M+ ++ V++G G GTGK+ + + Q++++ + ++++ RP Sbjct: 44 GKNREQKSYINMIKNNT---VTVGIGEPGTGKTFIPSVLAAQELVDIHSDIEQVILVRPN 100 Query: 1358484 YAVGGQSLGFLPGSEGEKMNPWAEAVFDTLGALVSKNVIEEVMNRDLLDVLPLTHIRGRS 1358305 +G +SLG LPG EK+ PW E + D + + + + + R + L + H RGR+ Sbjct: 101 EPLG-KSLGMLPGDLAEKLEPWLEPIADGMKWAIGDHAYKGYVERQKIKFLAIEHARGRT 159 Query: 1358304 LHDAFVIVDEAQSLERNVLLTVLSRIGMNSKVVLTHDVAQRDNLRVGRHDGVAAVIEKLK 1358125 ++++VIVDEAQ++ ++ +L+R+G + ++++ D+AQ+D + G+A ++E + Sbjct: 160 FNNSYVIVDEAQNISVEAMVCLLTRVGQDCRLIICGDIAQKD---IKGDSGLALLMEVYE 216 Query: 1358124 GHE--LFAHVTLTRSERSEIAALVTDVLEE 1358041 +E F+ + L + RS + D+ ++ Sbjct: 217 KYENAPFSMIELIDNVRSAESKAFYDIFKD 246 >ref|NP_891658.1|thymidine kinase Length = 198 Score = 127 bits (319), Expect = 3e-27 Identities = 78/203 (38%), Positives = 115/203 (56%), Gaps = 2/203 (0%) Frame = -3 Query: 1256500 VAKLYFRYGAMNSGKSTALLQAAFNYEERGQRVLLAKPHIDTKGA-GEIVSRLGVTREVD 1256324 +A+LYF Y +MN+GKST+LLQ+A+NY ER RVL+ KP ID + + E+VSR+G++ Sbjct: 1 MAQLYFYYASMNAGKSTSLLQSAYNYTERDMRVLILKPAIDNRDSESEVVSRIGLSAPAI 60 Query: 1256323 FLIPAGSDVETIYREHADYVDHDALLESIDTPKASVACLLIDEAQFLEPLQVDSLMRIAT 1256144 + + +YRE D P A + +DEAQF+ V L + Sbjct: 61 TFTESDDLFDLVYRESLGKRRPDRW-----RPDA----VFVDEAQFMTKEHVLGLCALVD 111 Query: 1256143 AISVPVMCYGIRTDFRTRAFPGSARLLEIAHTLEELKTICRCGRKAMFNGRL-VDGQFIF 1255967 ++PV+CYG+RTDF+ F GSA L+ A L E+K IC CG+KA R+ +G I Sbjct: 112 DANIPVLCYGLRTDFQGNLFEGSAALMAFADKLVEMKGICHCGKKATMVLRVDKEGNVIR 171 Query: 1255966 DGDQVAIDGNAVTYESLCPRCYL 1255898 DG Q+ + G Y S+C + ++ Sbjct: 172 DGAQIEV-GAEDKYVSVCRKHFI 193 Score = 71.6 bits (174), Expect = 2e-10 Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 11/190 (5%) Frame = -2 Query: 1314911 MFSGKSEELMRRVRRAKIAGVNVLVLSHSLDTRSTLSAITSHTGVNIPAVPVGDVESLAE 1314732 M +GKS L++ + VL+L ++D R + S + S G++ PA+ + + L + Sbjct: 11 MNAGKSTSLLQSAYNYTERDMRVLILKPAIDNRDSESEVVSRIGLSAPAITFTESDDLFD 70 Query: 1314731 VAHAEDY----------DLIAIDEAQFFGPDLVATVFELVE-RGATVIVEGLSVTFDGDP 1314585 + + E D + +DEAQF + V + LV+ V+ GL F G+ Sbjct: 71 LVYRESLGKRRPDRWRPDAVFVDEAQFMTKEHVLGLCALVDDANIPVLCYGLRTDFQGNL 130 Query: 1314584 FEPMPTFMAVAEDVLKLTAVCTICGRDAVFHQRVGAPGHTDDESDAPATDIDASHIGGLE 1314405 FE MA A+ ++++ +C CG+ A RV G+ D +G + Sbjct: 131 FEGSAALMAFADKLVEMKGICH-CGKKATMVLRVDKEGNV-------IRDGAQIEVGAED 182 Query: 1314404 AYVARCREHF 1314375 YV+ CR+HF Sbjct: 183 KYVSVCRKHF 192 >ref|NP_542563.1|RTCB-like protein Length = 454 Score = 126 bits (316), Expect = 6e-27 Identities = 123/438 (28%), Positives = 176/438 (40%), Gaps = 86/438 (19%) Frame = -2 Query: 31271 VALMPDAH--LGKGATVGSVIPTLGAIIPAAVGVDIGCGMIAVRTQFTKQDL--EARDLT 31104 V MPD H LG VG +P +IP VG DIGCGM A R +K D + D Sbjct: 40 VKFMPDCHGGLGPACIVGFSMPLTDRVIPKTVGGDIGCGMTAARLDVSKADQPSDIDDFR 99 Query: 31103 GLREAIERAVPTSAGAYNRKIVATAAPRIAELE-----------------------ELAE 30993 + + + VP G +++ + ELE E + Sbjct: 100 AVNKEVRDRVPMGTGRVHKE-------QKVELEWSFPWWKANEKLLHFYDAMDFDYESRD 152 Query: 30992 RSEFDPS-------------DYAGHWRHQLGSLGSGNHFIEVSVDE-DDRVWMFLHSGSR 30855 F PS DYA LG+LGSGNHFIE++ E D +W+ +HSGSR Sbjct: 153 EGMFRPSYFEKMCKRVGIDVDYA---IRSLGTLGSGNHFIELAESEVSDEMWVVVHSGSR 209 Query: 30854 GIGNKIATHHIKVAVQ---LNKKW------------------WIDL-------------- 30780 +G K+A++ + A + + KW W + Sbjct: 210 NLGQKVASYWQEKATEHRDADVKWSEMGERLKHYTNPDGSPDWEKIRLYNEGEEIERIGS 269 Query: 30779 ------PDP----DLAYLVEGTPEFSAYISQLKWAQHFALLNREEMMDRVARQLSETMGE 30630 PD DL YL EG + Y + AQ +A NR M+ VA L ++ Sbjct: 270 EIESYSPDSNRNKDLDYL-EGREAYGYYYDMML-AQTYASFNRLLMVQEVAETLDASI-- 325 Query: 30629 TVVEAERINCHHNFTQSEKHFNKTVWVSRKGAIEADAGRPGLIPGSMGTASYVVEGKGDP 30450 + +N HN+ E V RKG+ A G IP +M + + G+G+P Sbjct: 326 ----TKFLNSPHNYVDFED------MVIRKGSTRAQNGELFTIPMNMEDGTLLCRGRGNP 375 Query: 30449 VSLNSSPHGAGRQYSRTAARKTFSHDQLREAMVGIEYRDTDAFIDEIPQAYKPIDQVMAD 30270 S+PHGAGR SR A F D+ R+ M DE+P+AYKP + + Sbjct: 376 EYNYSAPHGAGRLGSRGWAHSEFDADEARKRMYDNGTYSARVPGDEVPEAYKPPELIEEH 435 Query: 30269 ASALVEIRHTLRQLVNVK 30216 + E+ L+ ++N K Sbjct: 436 ITPTAEVVDRLKPVINFK 453 >ref|NP_047129.1|putative tail tape measure protein Length = 916 Score = 126 bits (316), Expect = 6e-27 Identities = 159/755 (21%), Positives = 275/755 (36%), Gaps = 27/755 (3%) Frame = -1 Query: 57879 ALSVGELTAFISVDSTKADRGVSGFVNRMASAAGTATSKWSSVGSTFQNIGSKISNVGGS 57700 A+S G +D+ + G+ G +R + A + +G+ S +S V Sbjct: 119 AISSGSWNIDAKMDTKGVNSGIDGMKSRFSGLREIAVGVFRQIGA------SAVSAVSNG 172 Query: 57699 LTKXXXXXXXXXXXXXXXXXXXXGWGRLRSIDSANAQLKGLGYSAKDVENISGQVATALE 57520 L G + D + ++ L A+D N + + L Sbjct: 173 LRGWISDAMDTQTAMIALKNTMKFKGNGKDFDYVSNSMQKL---ARDT-NANSEDTLKLS 228 Query: 57519 GGMMTLGEGTRVAAGGLAAGVEQGKEL----EKYIGLVDA----AAIGMNTSVDETAMIF 57364 + LG+ + A A V+ + E G+V A +A G T+ + + Sbjct: 229 TTFIGLGDSAKTAVSKTEALVKANQAFGGTGENLKGVVQAYGQMSAAGKVTAENINQLTD 288 Query: 57363 NRVQGSGKVMTEELQMVEQ-RMPGFSNALQEHIGVASDDEFKKMVTAGEVGSDAFLETMD 57187 N + +QM Q + G N V+ D K M A + S A D Sbjct: 289 NNTALGASLKDTVMQMNPQLKQYGSFNEAVSAGAVSMDMLDKAMQKAADGSSSATKTIRD 348 Query: 57186 TFAG---DMAKEHAKSFDGLVDLAKAYVGQIGE--AMLGGVFEQSKDSIAEFVDWLSDPG 57022 T++G D+++ + + L + A + ++ + G E + L G Sbjct: 349 TWSGFNEDLSQALIPTLEALTPVINALIDKMDDWGKGAGKAIENVVKYFQDLFKQLQQNG 408 Query: 57021 VQAKAAELGKTIGDVFSKVLGVVKNVITWFMGLPAPIQKTXXXXXXXXXXXXXXXXXXGT 56842 + + + + F V+G++ N+I F G+ K Sbjct: 409 AITQFSAIWDNLKSAFGSVIGIIGNLIKSFAGVDESTSKNSTSVENVANTISSLANKFAD 468 Query: 56841 MASTIGTLITTFGAIAGVIAKIPAPLNILGGLFRMISPLLGLLKV-----GLMAVGGAMK 56677 + I I + I L L G F + + G++K ++ G ++ Sbjct: 469 ITKKIADFIGKISESKSAMDAIKVALVALAGAFVAMKVINGIIKAYETYNKIVEAGTIIQ 528 Query: 56676 ALWLTMMA-NPXXXXXXXXXXXXXXXVWFFTQTETGKKMWSAFMDWLGQAWEWIKXXXXX 56500 + +MA NP V+FFTQTETGKK W++F+D+L AW+ I Sbjct: 529 GAFNAIMAVNPFVLLGIAIAAVVAGLVYFFTQTETGKKAWASFVDFLKSAWDGI------ 582 Query: 56499 XXXXXXXXXXXAWNWVKDTSVAIWNGFISWIVGLWNGIIGTAKAVFLGIGTAIITAWNWI 56320 W D IWNG + G+W G++ F+GI I WN I Sbjct: 583 -----VSFFSGIGQWFAD----IWNGAVDGAKGIWQGLVDW----FIGIVQGIQNIWNGI 629 Query: 56319 KTKTSDVWNAIINWIKDTWNKIITTISDAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIA 56140 T + +W +I I+ W + S + V + +S ++ I + WN + Sbjct: 630 TTFFTTLWTTVIGGIQSVWGGVTGFFSGIFDAVSSVVSTVFSAIGGFASSAWN-----VL 684 Query: 56139 RAIVSAVRTVQGKV-QQIKNWITNTWNRVKNTTSNAW---SGIKSAVRNGINGAVNFVRR 55972 ++ SAV G + + +++ ++ + + S+AW I SAV +G N V Sbjct: 685 VSVWSAVAGFFGGIFNAVSGVVSSVFSAIGSFASSAWGVVQSIWSAVSGFFSGIFNSVSS 744 Query: 55971 LPGRALSALGNIGSKLYNSGKAMIDGFKDGIXXXXXXXXXXVKDGLSRIRNFFPFSPAKE 55792 + SALG S + + I G +G+ KD +S + N F Sbjct: 745 VVSGVFSALGGFASNAWGA----ISGVFNGVGNFFSGVFNGAKDVVSGVFNAF------- 793 Query: 55791 GPFSGKGWTWYSGQSMSEGLAD---GMASGTSDVV 55696 G F+ W +G + +GL D G+ G D + Sbjct: 794 GKFASNAWDAITG--VFKGLGDFFSGIFGGIKDTI 826 >ref|NP_932455.1|thymidine kinase Length = 191 Score = 126 bits (316), Expect = 6e-27 Identities = 78/198 (39%), Positives = 112/198 (56%) Frame = -3 Query: 1256500 VAKLYFRYGAMNSGKSTALLQAAFNYEERGQRVLLAKPHIDTKGAGEIVSRLGVTREVDF 1256321 +AKL+F Y AMNSGKST LLQ A+NY ER + L+ KP IDT+ + SR+G++++ Sbjct: 1 MAKLHFHYAAMNSGKSTHLLQVAYNYMERNMKPLILKPAIDTRDGDNVSSRIGISQKAH- 59 Query: 1256320 LIPAGSDVETIYREHADYVDHDALLESIDTPKASVACLLIDEAQFLEPLQVDSLMRIATA 1256141 +I +++ + + L+ ID C+L+DEAQFL QV L + Sbjct: 60 MISQDDNLKAFCEKLIE-------LDGID-------CILVDEAQFLTVDQVHQLGDVVDY 105 Query: 1256140 ISVPVMCYGIRTDFRTRAFPGSARLLEIAHTLEELKTICRCGRKAMFNGRLVDGQFIFDG 1255961 I+VPVMCYG+ +D FP SA LL +A E +TIC CG+KA R+ + G Sbjct: 106 INVPVMCYGLLSDSNGHLFPASAELLVLAERKVEHETICWCGKKATMTMRMNEHGEKIWG 165 Query: 1255960 DQVAIDGNAVTYESLCPR 1255907 +V+I GN + S+C R Sbjct: 166 PRVSIGGND-RFISVCRR 182 Score = 48.1 bits (113), Expect = 0.002 Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 5/184 (2%) Frame = -2 Query: 1314911 MFSGKSEELMRRVRRAKIAGVNVLVLSHSLDTRSTLSAITSHTGVNIPAVPVGDVESLA- 1314735 M SGKS L++ + L+L ++DTR ++S G++ A + ++L Sbjct: 11 MNSGKSTHLLQVAYNYMERNMKPLILKPAIDTRDG-DNVSSRIGISQKAHMISQDDNLKA 69 Query: 1314734 ---EVAHAEDYDLIAIDEAQFFGPDLVATVFELVER-GATVIVEGLSVTFDGDPFEPMPT 1314567 ++ + D I +DEAQF D V + ++V+ V+ GL +G F Sbjct: 70 FCEKLIELDGIDCILVDEAQFLTVDQVHQLGDVVDYINVPVMCYGLLSDSNGHLFPASAE 129 Query: 1314566 FMAVAEDVLKLTAVCTICGRDAVFHQRVGAPGHTDDESDAPATDIDASHIGGLEAYVARC 1314387 + +AE ++ +C CG+ A R+ G ++ P IGG + +++ C Sbjct: 130 LLVLAERKVEHETICW-CGKKATMTMRMNEHG---EKIWGPRVS-----IGGNDRFISVC 180 Query: 1314386 REHF 1314375 R H+ Sbjct: 181 RRHW 184 >ref|NP_817633.1|gp44 Length = 604 Score = 125 bits (313), Expect = 1e-26 Identities = 143/564 (25%), Positives = 250/564 (44%), Gaps = 31/564 (5%) Frame = +1 Query: 754162 GAPDEAWVVDLAEAGEADVSKLSSALRS-KTLILHSSKTQIKAW-RSLGLDVDDV---AG 754326 G P+EAWV+ + E G + ALR+ K +LH++ ++ R+LG+ ++D+ Sbjct: 62 GTPNEAWVIPV-ELGPRYEEEARQALRNVKGFVLHNASYDLQVIERTLGIPMEDMWPKVT 120 Query: 754327 DTALAAYLLVPDQRSYELQQIA-----LERAGIELSDAESDSGQLALDLESDQTAQTHGH 754491 DT + A+L+ D R ++ I L + I+ + AE+ +A +T + H Sbjct: 121 DTKILAHLV--DPRPFKEGGIGHKLEELVKHYIDANVAENVKTLMATLAREYKTTKAHIW 178 Query: 754492 RAAALLEVHDILAAKIDEANMSQVYRDIELPLVPVLAR---------------MELAGIA 754626 L + L + +D +++ + + +PLVP +++ ME G Sbjct: 179 TKVELTNPYYQLYSGMDPILAARLLQKL-IPLVPAVSQDLVPYEHKLAEICSYMERRGFL 237 Query: 754627 VDEAGLSGLIDEFTKQANASAELAYEAIGHEVNLGSPKQLQTVLFDELDMPKTKRTKTGY 754806 +D L ++ ++ + A A G E N+ SP Q+ L + +RT+TG Sbjct: 238 LDVEYSEKLSEDMLRKQDYWASKADILYGLE-NVNSPIQVAEALMRR-GVKIKERTETGQ 295 Query: 754807 TTDAEALAELFIKTEHPFLQHLLAYRDSTKLKQTVVG-LLKTVAEDGRIHTTYQQTVAAT 754983 + L + IK P + + + K ++T V L + R H A T Sbjct: 296 PKVDKVLLDRLIKEGDPLAEAITEAKKWGKWEKTWVRKFLDSRDSKDRCHANINPLQART 355 Query: 754984 GRLSSLDPNLQNIPVRTESGRRIREIFIADPHVDDARLLTADYSQIEMRIMAHLSGDAAL 755163 R+S Q +P +R F+AD + + + DY E+R++A LSGD + Sbjct: 356 ARMSITGIPAQTLP---SGDWLVRRCFLAD---EGQLMASVDYQAQELRVLAALSGDRTM 409 Query: 755164 IQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSKVKAMSYGLVYGLSAYGLSRQLAIGVDE 755343 IQAFKDG DLH + DS R K +++G VYG A ++ Q + ++ Sbjct: 410 IQAFKDGADLHLMTARAAWPDREITKDSPERKYAKTVNFGRVYGGGAKTVAEQTGLDMEA 469 Query: 755344 AKNLMEQYFERFGAVKDYLDEIVEQARANGYTETIMGRRRYLPALHSDRRQLRDMAERAA 755523 AK +++ + + V+ ++ +A NG+ T GRR LP S +A Sbjct: 470 AKQVVDGFDRAYPGVQRLSAKLQREASQNGHIVTPKGRR--LPVDPS--------RAYSA 519 Query: 755524 LNAPIQGSAADIMKIAMLKVSDRLGDHKSTVLLQVHDEIIVDVHPEE-----IDSVTQIV 755688 LN IQ ++ D+ A++++ + + L +HDEI+ V PE+ + +++ Sbjct: 520 LNYLIQSTSRDVTGEALIRLHE--AGFTKYLRLPIHDEILASV-PEDKAQWGAQEIARLM 576 Query: 755689 TEEMGSAFELDVPLDVNVGTGTSW 755760 E+MG + D VG G SW Sbjct: 577 AEQMGPVL---IGTDPEVG-GRSW 596 >ref|NP_050655.1|Gin Length = 193 Score = 124 bits (312), Expect = 2e-26 Identities = 75/184 (40%), Positives = 108/184 (58%) Frame = +2 Query: 1044866 LIGYARVSTRDQSTDRQQTDLLAAGVRRDDLYVDHGVSGARASRPEFNRALDALIDGDTL 1045045 LIGY RVST DQ+TD Q+ L+ AG + ++ D +SG R RP RAL L GDTL Sbjct: 2 LIGYVRVSTNDQNTDLQRNALVCAGC--EQIFEDK-LSGTRTDRPGLKRALKRLQKGDTL 58 Query: 1045046 VITTLDRLGRSTQNMLTFAEELRGRGAGLRVLNLGGGDVDTATPIGSMLFTIMAALAQME 1045225 V+ LDRLGRS +++++ ELR RG R L +DT++P+G F +M ALA+ME Sbjct: 59 VVWKLDRLGRSMKHLISLVGELRERGINFRSLT---DSIDTSSPMGRFFFHVMGALAEME 115 Query: 1045226 HEIKRERITDSIKKRRDAGLDLGGRPRRITDSQVRNAIRLIEGGEPAAQAARDLGMSRAT 1045405 E+ ER + R+ G +GGRP ++T ++ A RL+ G P Q A ++ +T Sbjct: 116 RELIIERTMAGLAAARNKG-RIGGRPPKLTKAEWEQAGRLLAQGIPRKQVALIYDVALST 174 Query: 1045406 FYRR 1045417 Y++ Sbjct: 175 LYKK 178 >ref|NP_899436.1|thymidine kinase Length = 194 Score = 118 bits (295), Expect = 2e-24 Identities = 74/212 (34%), Positives = 111/212 (52%), Gaps = 5/212 (2%) Frame = -3 Query: 1256500 VAKLYFRYGAMNSGKSTALLQAAFNYEERGQRVLLAKPHIDTK--GAGEIVSRLGVTREV 1256327 +AKLY+ Y AMN+GKS LLQAA NYE+ G V + D + G G+I SR+G+ + Sbjct: 1 MAKLYYNYSAMNAGKSAQLLQAAHNYEQTGSTVWYFNYYQDDRFGGVGKISSRIGLEHDA 60 Query: 1256326 DFLIPAGSDVETIYREHADYVDHDALLESIDTPKASVACLLIDEAQFLEPLQVDSLMRIA 1256147 +Y E D++D+ AL E + A + +DE QFL QV L + Sbjct: 61 -----------VLYSEEFDFIDY-ALFERVP------AAIFVDECQFLTEKQVLQLATLV 102 Query: 1256146 TAISVPVMCYGIRTDFRTRAFPGSARLLEIAHTLEELKTICR---CGRKAMFNGRLVDGQ 1255976 ++PV+CYGIR D+ F GSA L+ A + E+K +C C +KA G + G+ Sbjct: 103 DQYNIPVLCYGIRNDYMGNLFAGSAALMCHADEIREIKAMCSVEGCHKKATHIGLYIGGE 162 Query: 1255975 FIFDGDQVAIDGNAVTYESLCPRCYLQYSGGR 1255880 + G+Q I Y S+C + +L+ + G+ Sbjct: 163 RVTQGEQTYI--GDTDYRSMCRKHFLRDANGQ 192 >ref|NP_818252.1|gp201 Length = 362 Score = 116 bits (291), Expect = 5e-24 Identities = 92/339 (27%), Positives = 168/339 (49%), Gaps = 19/339 (5%) Frame = +1 Query: 301642 LGQIDRNYGKGAIMRLGEGVREPIACIPTGSIALDIALGIGGLPRGRVVEIYGPESSGKT 301821 L + YG+ A+M + V P + +G++ALD A+G+GGLP RV+EI G E +GKT Sbjct: 11 LSDVQNKYGENAVMMAKDMVTYPP--VRSGTLALDFAIGVGGLPSDRVIEIGGTEGTGKT 68 Query: 301822 TVALHAVAN--AQKTGGIAAFIDAEHALDPEYAKKLGVD---TDQLLVSQPDTGEQALEI 301986 T++L A+ + A +D EH + ++A +L + D+++ +QPD EQA + Sbjct: 69 TLSLLAMQQFLLAQPERFALVLDLEHKMTKDWAVQLVGEELWDDRVIYAQPDHVEQATNM 128 Query: 301987 ADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKIAGALSQSKTT 302166 L+ SG + + DS+ +A IE E VG A +++ R + ++ + Sbjct: 129 YSDLVGSGQICFALFDSIGGAAVRAGIEKEAEKVQVGGNANAITKFARLASNFSAKYRCL 188 Query: 302167 AIFINQLREKVGVFFGSPETTSGGKALKFYASVRIDVR-----RIETLKEGQD-AVGNRT 302328 + NQ E+V + T GG K +RI ++ ++ET+ G+ VG + Sbjct: 189 TVGTNQ--ERVDMEGFRRYMTPGGNGWKHACILRIRLKASTQDKVETVVNGEKMVVGRKI 246 Query: 302329 RAKIVKNKIAPPFKQAEFDII------YGQGISREGSLIDMGVDNGIIRKSGSWFTYDGD 302490 A+IVKN++A P + A + + YG GI ++ + + G+I++ S++ + Sbjct: 247 HAQIVKNQLAAPGRSAWWWMYHVPTEEYGFGIDTLDEIVRLAILTGVIKQRVSYYDHPAL 306 Query: 302491 QLG--QGKENVRNFLRDNPGLAEEIELKIKHKMGLIKVD 302601 + G +G ++ + D+ L I + + ++K D Sbjct: 307 ENGTVKGMTSLSKAIGDDEALRNTI---VSETLAVLKTD 342 >ref|NP_044960.1|unknown Length = 999 Score = 115 bits (287), Expect = 1e-23 Identities = 189/895 (21%), Positives = 309/895 (34%), Gaps = 110/895 (12%) Frame = -1 Query: 57879 ALSVGELTAFISVDSTKADRGVSGFVNRMASAAGTATSKWSSVGSTFQNIGSKISNVGGS 57700 A+S G +D+ + G+ G +R + A + +GS S +S VG Sbjct: 119 AISSGSWDIDAKMDTKGVNSGIDGMKSRFSGLREIAVGVFRQIGS------SAVSAVGNG 172 Query: 57699 LTKXXXXXXXXXXXXXXXXXXXXGWGRLRSIDSANAQLKGLGYSAKDVENISGQVATALE 57520 L G + D + ++ L AKD N + + L Sbjct: 173 LKGWVSDAMDTQKAMISLQNTLKFKGNGQDFDYVSKSMQTL---AKDT-NANTEDTLKLS 228 Query: 57519 GGMMTLGEGTRVAAGGLAAGVEQGKEL----EKYIGLVDAAAIGMNTSVDETAMIFNRVQ 57352 + LG+ + A G A V+ + E+ G+V A M+ S +A N++ Sbjct: 229 TTFIGLGDSAKTAVGKTEALVKANQAFGGTGEQLKGVVQAYG-QMSASGKVSAENINQLT 287 Query: 57351 GSGKVMTEELQMVEQRMPGFSNALQEHIGVASDDEF---------KKMVTAGEVGSDAFL 57199 + + L+ M + AL+++ AS E K M G G A Sbjct: 288 DNNTALGSALKSTVMEM---NPALKQYGSFASASEKGAISVEMLDKAMQKLGGAGGGAVT 344 Query: 57198 ---ETMDTFAGDMAKEHAKSFDGLVDLAKAYVGQIGEAMLGGVFEQSKDSIAEFVD--W- 57037 + D+F ++ + D L + + + ++ A G ++ DSI ++V W Sbjct: 345 TIGDAWDSFNETLSLALLPTLDALTPIISSIIDKM--AGWGESAGKALDSIVKYVKELWG 402 Query: 57036 -LSDPGVQAKAAELGKTIGDVFSKVLGVVKNVITWFMGLPAPIQKTXXXXXXXXXXXXXX 56860 L G + +++ + F VL ++ +I F G+ + ++ Sbjct: 403 ALEKNGALSSLSKIWDGLKSTFGSVLSIIGQLIESFAGIDSKTGESAGSVENVSKTIANL 462 Query: 56859 XXXXGTMASTIGTLITTFGAIAGVIAKIPAPLNIL----------GGLFRMISPLLGLLK 56710 + I F G I + L L G+ IS L + Sbjct: 463 AKGLADVIKKIADFAKKFSESKGAIDTLKTSLVALTAGFVAFKIGSGIITAISAFKKL-Q 521 Query: 56709 VGLMAVGGAMKALWLTMMANPXXXXXXXXXXXXXXXVWFFTQTETGKKMWSAFMDWLGQA 56530 + A G M A M NP V+FFTQTETGKK W++F+D+L A Sbjct: 522 TAIQAGTGVMGAFNAVMAINPFVALGIAIAAIVAGLVYFFTQTETGKKAWASFVDFLKSA 581 Query: 56529 WEWIKXXXXXXXXXXXXXXXXAWNWVKDTSVAIWNGFISWIVG-------LWNGIIGTAK 56371 W+ I WN D + IW G + W G +WNGI Sbjct: 582 WDGI----VSFFSGIGQWFADIWNGAVDGAKGIWQGLVDWFSGIVQGVQNIWNGITTFFT 637 Query: 56370 AVFLGIGTAIITAWNWIKTKTSDVWNAIINWIKDTWNKIITTISDAVNKVKNW------- 56212 ++ + T I TAW + + +W+ I+N + + TTIS V NW Sbjct: 638 TLWTTVVTGIQTAWAGVTGFFTGLWDGIVNVV----TTVFTTISSLVTGAYNWFVTTFQP 693 Query: 56211 ---------------ISDAWTMIKT-------MTAKLWNGIK---MAIARAIVSAVRTV- 56110 I+ A+ +I + WNGI I A+ S V TV Sbjct: 694 LISFYKSIFGLVGSVINLAFQLILAIIRGAYQLVIGAWNGISGFFGVIFNAVSSVVSTVF 753 Query: 56109 -------------------------QGKVQQIKNWITNTWNRVKNTTSNAW---SGIKSA 56014 G +K +++ ++ + + S+AW S I SA Sbjct: 754 SAIGSFAGSAWNVLVGVWNAVAGFFGGIFNAVKGVVSSAFSAIGSFASSAWGVVSSIWSA 813 Query: 56013 VRNGINGAVNFVRRLPGRALSALGNIGSKLYNSGKAMIDGFKDGIXXXXXXXXXXVKDGL 55834 V +G N VR + SALG S + + + G D V Sbjct: 814 VSGFFSGIFNAVRSVVSGVFSALGGFASNAWGAITGIFSGVADFFSGVFDGAKNIVSGVF 873 Query: 55833 SRIRNFFPFS-PAKEGPFSGKGWTWYSGQSMSEGLADGMASGTSDVVRQSEALMKAAA-- 55663 NF + A G F+G G + + D + G +D + + + A Sbjct: 874 EAFGNFASNAWNAITGVFNGIGSFFSDIFGGVKNTIDSVLGGVTDTINNIKGSIDWVASK 933 Query: 55662 ----FDAPSIPGMTRPSSSASGLDEDTGPTSNIN-----FHITNPVAEPTSETAR 55525 F + G+T + S+SG T S+ N F++ + S AR Sbjct: 934 VGGLFKGSMVVGLTDVNLSSSGYGLSTNSVSSDNRTYNTFNVQGGAGQDVSNLAR 988 >ref|NP_835691.1|similar to DNA helicase Length = 670 Score = 114 bits (286), Expect = 2e-23 Identities = 123/536 (22%), Positives = 223/536 (41%), Gaps = 37/536 (6%) Frame = -2 Query: 324491 WQPDS----PRLSRYHMDLWAEFDELVDDSTAAASWRRSVEALSHLGEIPSLD-----VP 324339 W PD + Y L FDE AA + +E +H E+ S+ VP Sbjct: 44 WDPDKRVWYTTILDYASKLKGYFDE-----KAAQQYNLLLEEKNHKLELSSVTSSDFAVP 98 Query: 324338 EGIEATLRPYQQEGFSWLAALWSSGLGGILADDMGLGKTLQALSLFTHIKNTTANASPIL 324159 P+Q+ G ++ ++ G ++AD+MG GKT+Q+ + N +L Sbjct: 99 APTGYDYFPFQKAGVHFVTEVFKEYPGALIADEMGTGKTIQSAGVIN-----VMNPDRVL 153 Query: 324158 VVAPTSVMSTWRAEAEKFAPGLRVTTISATEKKRKTALALEIEDA---DLVITSYAILRL 323988 VV P S+ W E +++ EK+ E++ + + I +Y IL Sbjct: 154 VVCPASLKYNWERELKRWV---------VHEKEIIVVNGNEVDFSLKNTIYIINYDILHR 204 Query: 323987 DAQAFRSIQWDTFVLDEAQFVKNRTAKVHTAAKGI------QARFRLAITGTPMENSLTD 323826 ++ +D ++DE ++KN K K I Q L +TGTP+ N + Sbjct: 205 ISE--EDYAYDLVIVDECHYIKNPKTKRSGFVKSIVKSSIEQGGKVLFLTGTPIVNRPIE 262 Query: 323825 LWSLYSITSPGLLPGIEKFRREIVLPIESG-----ESPEGMALLRRRIRP-FMKRRNKEL 323664 L+ + + +P + + + +G + L+ ++R M RR K+ Sbjct: 263 LYPILEMAAPKVFGNFWGYAKRYCNAYYNGYGWDFRGASNLEELQGKLRSTIMIRRLKKD 322 Query: 323663 VAADLPPKQEQILSVELSSKHRDLYNTVLQKERKKLLGLINDMDRNRFAIFRSLTLLRML 323484 V +LPPK +I+ V+L+ + L ++ + L I+ + S L + Sbjct: 323 VLKELPPKSRKIVPVKLNKMFAEEEIFKLAEDLQNLKNYISVLREFERVGVESADLAEAM 382 Query: 323483 AIDPYLIDEKYEAIGSSKL-----SALFSHLDDIIA-----EGHRTIIFSQFTSFLSRVG 323334 A + +E + + A F+ D I++ E ++F+ + Sbjct: 383 AEFDEKMKVMFERVAEMRRFYAIHKAPFA-ADYIVSLVKEEEVDGLVVFAHHHDVFEIIQ 441 Query: 323333 EQLDHRNINYCYLDGSTR--NRGAVIDDFRAGEAPIFLISLKAGGFGLTLTEADYVFLLD 323160 + L+ + I Y + G R ++DF++G+ + L S+ A G G+TLT A ++ Sbjct: 442 KVLEAKGITYARITGEENVVQRQKAVEDFQSGKVDVVLCSILAAGVGITLTRAKTAVFVE 501 Query: 323159 PWWNPAVEAQAVDRAHRIGQ-TKNVMVYRMVSEKTIEEKVLALQERKAQLFDSLVN 322995 W P QA DR HRIGQ + V ++ +V+ T++E RK ++ + +N Sbjct: 502 LDWVPGNILQAEDRLHRIGQEAECVDIHYIVARHTLDENFADYLTRKIEIIEKALN 557 Score = 101 bits (251), Expect = 2e-19 Identities = 114/478 (23%), Positives = 200/478 (41%), Gaps = 28/478 (5%) Frame = +3 Query: 367521 PYQARGLSWLDFLGRLGIGAVLADDMGLGKTVQLXXXXXXXXXXXXXXXXXXXXTSAPTL 367700 P+Q G+ ++ + + GA++AD+MG GKT+Q L Sbjct: 107 PFQKAGVHFVTEVFKEYPGALIADEMGTGKTIQSAGVINVMNPDR-------------VL 153 Query: 367701 LLCPMSLIGNWEAEVARFAPSLRILVYYGSARPRGDAFDAALAESDLVITTYATASRDIA 367880 ++CP SL NWE E+ R+ + ++ G+ D +L ++ + I Y R I+ Sbjct: 154 VVCPASLKYNWERELKRWVVHEKEIIVVN-----GNEVDFSL-KNTIYIINYDILHR-IS 206 Query: 367881 ELERIGWVRVVLDEAQVIKNRLSQTTKAIRRL------NGGQKIALTGTPVENRLSELWS 368042 E E + V++DE IKN ++ + ++ + GG+ + LTGTP+ NR EL+ Sbjct: 207 E-EDYAYDLVIVDECHYIKNPKTKRSGFVKSIVKSSIEQGGKVLFLTGTPIVNRPIELYP 265 Query: 368043 IMDFVNPGMLGTPEKFRERFVRPI------EVRADEERAHRLRRITRPYILRRTKTDPRI 368204 I++ P + G + +R+ + R ++ ++RR K D + Sbjct: 266 ILEMAAPKVFGNFWGYAKRYCNAYYNGYGWDFRGASNLEELQGKLRSTIMIRRLKKD--V 323 Query: 368205 IDDLPEK----IEIKQHYRLTVEQASLYQSVVAEMMGRIEESSGIERRGLVLAAMTKLKQ 368372 + +LP K + +K + E+ + + I ER G+ A + + Sbjct: 324 LKELPPKSRKIVPVKLNKMFAEEEIFKLAEDLQNLKNYISVLREFERVGVESADLAEAMA 383 Query: 368373 VCNHPAHLLHDGSAIGQRSGKLERFEEIMSETLA-----------EGDRVLCFTQFTDFG 368519 + ++ + R ++ RF I A E D ++ F D Sbjct: 384 EFDEKMKVMFE------RVAEMRRFYAIHKAPFAADYIVSLVKEEEVDGLVVFAHHHDVF 437 Query: 368520 EMLVPHLAAKFDTDVAYLAGSTSKQRRTQIVKDFQEPDGPKIFVLSLKAGGTGLNLTAAN 368699 E++ L AK T A + G + +R + V+DFQ + + S+ A G G+ LT A Sbjct: 438 EIIQKVLEAKGIT-YARITGEENVVQRQKAVEDFQSGK-VDVVLCSILAAGVGITLTRAK 495 Query: 368700 QVVHLDRWWNPAVENQATDRAFRIGQKRR-VQVRKFIGIGTLEERIDAILEEKKELAD 368870 V ++ W P QA DR RIGQ+ V + + TL+E L K E+ + Sbjct: 496 TAVFVELDWVPGNILQAEDRLHRIGQEAECVDIHYIVARHTLDENFADYLTRKIEIIE 553 Score = 65.5 bits (158), Expect = 1e-08 Identities = 131/595 (22%), Positives = 233/595 (39%), Gaps = 31/595 (5%) Frame = -3 Query: 410020 QLANRAASEY-VPDLAGLKFTPFPHQREGIAWAAGLMTASLDAGENSISIQGALLADDMG 409844 +L++ +S++ VP G + FP Q+ G+ + + GAL+AD+MG Sbjct: 86 ELSSVTSSDFAVPAPTGYDY--FPFQKAGVHFVTEVFK----------EYPGALIADEMG 133 Query: 409843 LGKTFMTLVALRDFAARQREMRGEAKPILAVLPLSLIENWEDELKNAFDEPPFDDVVVLQ 409664 GKT + + + +L V P SL NWE ELK +++V Sbjct: 134 TGKTIQSAGVINVMNPDR---------VLVVCPASLKYNWERELKRWVVHEK--EIIV-- 180 Query: 409663 SSRDQDRFKIDGRGAETQASADSLDDQGMVNAESLRLSLRVGASQKDRRLDKPGRLVLTT 409484 VN + SL+ + + Sbjct: 181 -----------------------------VNGNEVDFSLK-------------NTIYIIN 198 Query: 409483 YQNLGRFQLSLGQVEWGAVVFDEAQQIKNPEILTSRAAKGL------QADFKLLCTGTPV 409322 Y L R +S + V+ DE IKNP+ S K + Q L TGTP+ Sbjct: 199 YDILHR--ISEEDYAYDLVIVDECHYIKNPKTKRSGFVKSIVKSSIEQGGKVLFLTGTPI 256 Query: 409321 ENSLRDIWSLLDTAQPDLLGSWAEFRERWIKNVENLPVGEQVVQGRELREHIGRF----M 409154 N +++ +L+ A P + G++ + +R+ N G L E G+ M Sbjct: 257 VNRPIELYPILEMAAPKVFGNFWGYAKRYCNAYYN-GYGWDFRGASNLEELQGKLRSTIM 315 Query: 409153 LRRTKEDNIQDLP--SRTVYTGLAEEAAAGSLKPGYVYDPRLMNDMPGAQ---RMAYD-Q 408992 +RR K+D +++LP SR + P +N M + ++A D Q Sbjct: 316 IRRLKKDVLKELPPKSRKIV-------------------PVKLNKMFAEEEIFKLAEDLQ 356 Query: 408991 VLESHRPRKGGALETIQKLRSVSLHPATVPEFGASWSAAESARINGMIEVLDEIRE--AD 408818 L+++ + +++ V + A + E A + ++ M E + E+R A Sbjct: 357 NLKNY-------ISVLREFERVGVESADLAEAMAEF----DEKMKVMFERVAEMRRFYAI 405 Query: 408817 EKA------IIFVISKTVQTRLAVWLHER--YGITPKIV--NGETKAVASGSKKANLTRK 408668 KA I+ ++ + L V+ H + I K++ G T A +G + + R+ Sbjct: 406 HKAPFAADYIVSLVKEEEVDGLVVFAHHHDVFEIIQKVLEAKGITYARITGEENV-VQRQ 464 Query: 408667 GIITDFEAQSG-FNLIIMSPXXXXXXXXXXXANHAIHLERHWNPAKEAQATDRIYRIGQ- 408494 + DF QSG ++++ S A A+ +E W P QA DR++RIGQ Sbjct: 465 KAVEDF--QSGKVDVVLCSILAAGVGITLTRAKTAVFVELDWVPGNILQAEDRLHRIGQE 522 Query: 408493 TRPVHVYLPLANHPTLSSFDVNLDALLRSKTDLKDAVVVPGKVEDELMRKMGVSD 408329 V ++ +A H + D N L K ++ + + +++ +L + + + D Sbjct: 523 AECVDIHYIVARH----TLDENFADYLTRKIEIIEKALNHERMKTQLEKPVSLLD 573 Score = 45.8 bits (107), Expect = 0.011 Identities = 35/177 (19%), Positives = 81/177 (45%), Gaps = 2/177 (1%) Frame = -2 Query: 618320 SNIRQRYHMVQHSHKLDALTRILEVEEYEGIIMFVRTKQATEELAEKLRARGFKASAING 618141 + +R+ Y + + D + +++ EE +G+++F E + + L A+G + I G Sbjct: 397 AEMRRFYAIHKAPFAADYIVSLVKEEEVDGLVVFAHHHDVFEIIQKVLEAKGITYARITG 456 Query: 618140 DIPQQARERTIDMLRNGKVDILVATDVAAR-GLDVERITLVVNFDIPHDTESYVHRIGRT 617964 + R++ ++ ++GKVD+++ + +AA G+ + R V ++ + + R Sbjct: 457 EENVVQRQKAVEDFQSGKVDVVLCSILAAGVGITLTRAKTAVFVELDWVPGNILQAEDRL 516 Query: 617963 GRAGRSGEAI-LFVTPREQRLLGSIERATKQKVEQLKMPSVEELTNTRVEKFTKRID 617796 R G+ E + + L + +K+E ++ E T++EK +D Sbjct: 517 HRIGQEAECVDIHYIVARHTLDENFADYLTRKIEIIEKALNHERMKTQLEKPVSLLD 573 >ref|NP_862888.1|PblA Length = 1007 Score = 114 bits (285), Expect = 2e-23 Identities = 98/399 (24%), Positives = 145/399 (36%), Gaps = 92/399 (23%) Frame = -1 Query: 56799 IAGVIAKIPAPLNILGGLFRMISPLLGLLKVG-------LMAVGGAMKALWLTMMANPXX 56641 I G+ A A L+I GL G L M GA + ANP Sbjct: 456 IKGIEAIRNATLSITNGLMLAQFVRTGALTTAEAANAAATMGASGAFGIFNAVLAANPIG 515 Query: 56640 XXXXXXXXXXXXXVWFFTQTETGKKMWSAFMDWLGQAWEWIKXXXXXXXXXXXXXXXXAW 56461 VWFFTQTETG+K+WS+F+DW+ QAW+ I W Sbjct: 516 LIVTAVAALTAGLVWFFTQTETGQKIWSSFVDWIKQAWQGIADFFVGIWSGISEGASTLW 575 Query: 56460 NWVKDT-------SVAIWNGFISWIVGLWNGIIGTAKAVFLGIGTAIIT----------- 56335 + V T A+WN +++ LW I A + I TA++ Sbjct: 576 DGVVTTWNAYVESLKAMWNAVVTFFSDLWESIKEAASTAWTLITTAVMMVVQPFIDGFMN 635 Query: 56334 ----------------------AWNWIKT----------------------KTSDVWNAI 56287 AW +IK+ S +W I Sbjct: 636 IWNNISEGLTQVWEGIKLIFEGAWEFIKSIFLGAILIIIDLVTGNFGQLGADLSLIWEGI 695 Query: 56286 INWIKDTWNKIITTISDAVNKV-----------KNWISDAWTMIKTMTAKLWNGIKMAIA 56140 N I W I T S V+ + N +S W IKT + W IK ++ Sbjct: 696 KNGISLIWEGIKTYFSGVVDVIVGYATGVFENFSNVLSTIWEFIKTAASMAWEWIKSTVS 755 Query: 56139 RAIVSAVRTVQGKVQQIKNWITNTWNRVKNTTSNAWSGIKSAVRNGINGAVNFVRRLPGR 55960 I ++ Q ++++ W +K+T S AWSG+KS V ING V+ + Sbjct: 756 NLITGLIQGAQNLWNNFVSFLSGLWENIKSTASAAWSGLKSLVLGFINGLVSGAQTAWNN 815 Query: 55959 ALSALGNIGSK------------LYNSGKAMIDGFKDGI 55879 A+ ++ +K L+ +GKA+++GF G+ Sbjct: 816 MKQAVSDLVTKVTNIFNGIKNINLWEAGKAILNGFLGGL 854 >ref|NP_046860.1|DNA polymerase Length = 607 Score = 114 bits (285), Expect = 2e-23 Identities = 141/571 (24%), Positives = 235/571 (41%), Gaps = 57/571 (9%) Frame = +1 Query: 754162 GAPDEAWVV---DLAEAGEADVSKLSSALRSKTLILHSSKTQIKAWRSLGLDVDDVAG-- 754326 G E+WV+ DL G +V + L +K ++ ++S R G+ ++ + Sbjct: 62 GTQTESWVLPIEDLEMLGREEVHEALDVL-NKIVMQNASYDLQVLDRCFGIKMESLWPKI 120 Query: 754327 -DTALAAYLLVPDQRS-----YELQQIALERAGIELSDAESDSGQLALDLESDQTAQTHG 754488 DT + A L+ P + L+++ E I AE+ G +A + +T + Sbjct: 121 LDTQILAKLVDPRPFGAGGFGHSLEELIAEF--ISKEQAENVKGLMAKLAKEHKTTKAKI 178 Query: 754489 HRAAALLEVHDILAAKIDE-------ANMSQVYRDIELPLVPVLARMELAGIAVDEAGLS 754647 L + A +D + ++ + D+ PLVP ++ +D G Sbjct: 179 WSTIDLYHPEYLTYAGMDTVFTARICSALAPLVPDVSRPLVPYEHKISEICSYIDRRG-- 236 Query: 754648 GLIDEFTKQANASAELAYEAIGHEVNLGSPKQLQTVLFDELDMPKTKRTKTGYTTDAEAL 754827 F S +LA + +G + + + VL +E + K T E + Sbjct: 237 -----FLLDVEYSQQLADKWLGEQ------QVWEAVLLNEYGIEKVNAT--------EDV 277 Query: 754828 AELFIKTEHPFLQHLLAYRDSTKLK----------------------------------Q 754905 AE F + H F A+ DS K K Sbjct: 278 AEAFEELGHKFT----AFTDSGKRKVDKGFYADMIAAGGEKAHLAEMVQEAKKLGKWRTS 333 Query: 754906 TVVGLLKTVAEDGRIHTTYQQTVAATGRLSSLDPNLQNIPVRTESGRRIREIFIADP-HV 755082 V L T + R HT A T R+S Q +P S +R F+ADP HV Sbjct: 334 WVQTFLDTRDSEDRCHTFVNPLQARTSRMSITGIPAQTLPA---SDWTVRRCFLADPGHV 390 Query: 755083 DDARLLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSK 755262 + + DY E+R++A LSGD +IQAFKDG DLH FG I + D R Sbjct: 391 ----MASIDYQAQELRVLAALSGDRTMIQAFKDGADLHLMTARAAFGDHITK-DDPERKY 445 Query: 755263 VKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQARANGYTE 755442 K +++G VYG A ++ Q I ++ AK +++ + + + V Y ++ +A+ NGY Sbjct: 446 AKTVNFGRVYGGGANTVAEQTGISIETAKQVVDGFDKAYPGVTRYSRKLANEAKRNGYII 505 Query: 755443 TIMGRRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIAMLKVSDRLGDHKSTVLL 755622 MGRR L DR + +ALN IQ ++ D+ A++++ + + L Sbjct: 506 NPMGRR-----LPVDRSR-----TYSALNYQIQSTSRDVTCKALIRLHE--AGFTPYLRL 553 Query: 755623 QVHDEIIVDVHPEEID----SVTQIVTEEMG 755703 +HDEI+ + E+ + + +++ EEMG Sbjct: 554 PIHDEIVASLPAEKANWGAREIARLMAEEMG 584 >ref|NP_958252.1|hypothetical protein Length = 263 Score = 114 bits (285), Expect = 2e-23 Identities = 88/255 (34%), Positives = 123/255 (48%), Gaps = 33/255 (12%) Frame = -2 Query: 867485 WSQSRLVGFDLETTGVDPATARIVTAAFVE-SAENART--WLADPGVEIPEPARAVHGIT 867315 W ++R+V FDLETTGVD RIVTAA ++ AE T WLADPG+EIPE A AVHGIT Sbjct: 2 WHKARMVAFDLETTGVDVEQDRIVTAAAIDLGAEKPLTLEWLADPGIEIPEGATAVHGIT 61 Query: 867314 TEFAQANGAPVAEVVAELCTVLADLKAEGAVVVGHNIVYDLSVMSAEVKRHQPHIGLAAL 867135 TE A+ +G +VV ++ LA +G VVGHN+ YDL+++ E +R++ + L Sbjct: 62 TEHAREHGERAHDVVDQVAETLALRVRDGVPVVGHNVPYDLTLLDRECRRYELPLLQDRL 121 Query: 867134 LPT---IVDTFVLDKKVEQFRR------GKRTLTETAKRWKVSXXXXXXXXXXXXXXXXX 866982 T ++DT VLD+ +R+ G R L A+ + + Sbjct: 122 DGTPLHVIDTRVLDQHCLPYRKRVSETQGARQLITLAQVYSLPWDAEAAHGCSYDALMAA 181 Query: 866981 XXXXAQSS---------------------EEIAQLTRDEIMAAQGEWKRDQAADLQSWLR 866865 S E+ L ++ Q + +QAA LQ Sbjct: 182 RIAYRIGSLAHMPKLEWPQSIRFNRRPRFHELDGLDLAQLHELQIKLAAEQAAGLQEHF- 240 Query: 866864 RKGNAEAVVDGSWPM 866820 RK + AVVDGSWP+ Sbjct: 241 RKTDPAAVVDGSWPL 255 >ref|YP_006944.1|NAD-dependent DNA ligase, subunit A Length = 323 Score = 114 bits (284), Expect = 3e-23 Identities = 112/380 (29%), Positives = 163/380 (42%), Gaps = 4/380 (1%) Frame = +3 Query: 105474 EKIEEQRAAYYKDDSPLVADAEYDDLVHRLEDLEEKFPELVTDSSPTQTVGGNVDTSTFD 105653 E I+ + AYY+ S L++D EYD LV R EE P+ Sbjct: 6 EFIKRCQEAYYQGMS-LISDEEYDRLVKRFPLEEEIGPK--------------------G 44 Query: 105654 PVEHIGRMYSLDNVFDFEELRGWYDRVRAATSATSKFLCELKIDGLAVNLLYRNGELVRA 105833 + H+ RMYSL V+ Y+R + K+DG A++LLY NGE V+A Sbjct: 45 DIPHLYRMYSLQKVY--------YNRGDKPPFNPLGQVETDKLDGCAISLLYINGEFVQA 96 Query: 105834 ATRGDGRIGEDITANVRTISDIPDHLDTDYPPAEVEIRGEVFFPLEKFTELNAALVEEGK 106013 TRG+G +G D+T+NVR + +IP + P +I GEV E Sbjct: 97 LTRGNGILGNDVTSNVRLL-NIPKKISQKVP---TQITGEVLITKE-------------- 138 Query: 106014 APFANPRNSAAGSLRQKDPAVTAVR----PLHMLVHGIAVWTPADDSHPEPAHQSEVYEQ 106181 N RN A+G++ KD R L + +GI E +E Y + Sbjct: 139 --VENKRNFASGAINLKDSDDFVQRIGEGGLIFVAYGI-------QCSAESVGITEAYLK 189 Query: 106182 FRSWGLPISEYFKVLETVDEIEEFITYYGEHRHDVTHELDGIVIKIDDIAVQETLGYTSR 106361 W E E F+T DG V++I+D G+T++ Sbjct: 190 DMLW--------------LENENFLTVVNVRSFFKWIPTDGKVVRINDNNKFFREGWTNK 235 Query: 106362 APRWATAFKYPPEEVTTKLLDIQVQVGRTGRVTPFAVMEPVTVAGSTVERATLHNGYEVK 106541 PR A A K E T L ++ QVG +G+VTP EPV + +T+ +ATL+N + Sbjct: 236 FPRGAFAIKEDEEGEITTLTKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNNVDYIN 295 Query: 106542 RKGVLIGDTVTLRKAGDVIP 106601 + IG + + +AG VIP Sbjct: 296 SLDLEIGCQIRVIRAGGVIP 315 >ref|YP_164694.1|orf59 Length = 988 Score = 113 bits (283), Expect = 4e-23 Identities = 78/258 (30%), Positives = 127/258 (49%), Gaps = 7/258 (2%) Frame = +1 Query: 754936 EDGRIHTTYQQTVAATGRLSSLDP-NLQNIPVRTESGRRIREIF----IADPHVDDARLL 755100 +D + ++ V T RLSS N QN RT++ + + LL Sbjct: 611 KDDFVKPSFNPYVTETSRLSSSGAFNAQNQTRRTDNPNDFNYSYGVKSMYRSRFKGGILL 670 Query: 755101 TADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSKVKAMSY 755280 DYS +E+ MA LS D + QA D +D+H + S F V DEV +R+ K +S+ Sbjct: 671 NMDYSALEIYTMAMLSKDRNMTQALLDHKDIHKHNASLGFHVPYDEVTKNLRTSAKKVSF 730 Query: 755281 GLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQARANGYTETIMGRR 755460 G+ Y + L++ L + EA+ + + VK + + E A Y ET+ G R Sbjct: 731 GIPYSMGIKTLAKDLGVDEKEAQRIYDAILATMPQVKQAMADSQEFAARYKYAETLNGFR 790 Query: 755461 RYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIAMLKVSDRL--GDHKSTVLLQVHD 755634 R L + S + +R A+R A N IQGS ++I+ + ++ V ++ + KS ++ VHD Sbjct: 791 RDLSNVDSILKDVRAKAKRQAFNTEIQGSGSNIVNLGLISVHEQFCKRNLKSKIIATVHD 850 Query: 755635 EIIVDVHPEEIDSVTQIV 755688 I++DV+P E+ V +V Sbjct: 851 SILLDVYPPELAEVYAVV 868 >ref|NP_112664.1|INT Length = 485 Score = 113 bits (282), Expect = 5e-23 Identities = 109/478 (22%), Positives = 210/478 (43%), Gaps = 34/478 (7%) Frame = -2 Query: 1007102 TNEVAAYVRASMDRKGDR-WTVDTQLRKIRALAEAKDWNVVEVYEDNAVSATKKRRAGTR 1006926 T +VA Y R S + + +++D Q+ ++ AEA W V + Y D S K R + Sbjct: 2 TKKVAIYTRVSTTNQAEEGFSIDEQIDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQ 61 Query: 1006925 WAEMLEDARAGRFSMVVAVDMDRLLRSTKDLNTLI-----DLGLRVVTVDGEIDLSTADG 1006761 ++ D F V+ +DRL RS +D L+ + ++++ ID S+A G Sbjct: 62 --RLINDIENKAFDTVLVYKLDRLSRSVRDTLYLVKDVFTKNKIDFISLNESIDTSSAMG 119 Query: 1006760 EFRATMLAALARFEARRKAERQIRSNERRRAEGIPTSAW--KAFGWTRDG-----ELIPE 1006602 T+L+A+ FE R + ++ + RA+ + W AFG+ + E++P Sbjct: 120 SLFLTILSAINEFE-RENIKERMTMGKLGRAKSGKSMMWTKTAFGYYHNRKTGILEIVPL 178 Query: 1006601 EAEAIQRAFDAFLGEPSLSIRRIREDLNAAGHLTARGSEFSVDAVRYLLANPLYAGYIKH 1006422 +A +++ F +L +S+ ++R+ LN +GH+ + +S +R L NP+Y GYIK Sbjct: 179 QATIVEQIFTDYLS--GISLTKLRDKLNESGHI-GKDIPWSYRTLRQTLDNPVYCGYIKF 235 Query: 1006421 YASGELYPVQGDTFPPIVGEQTWRAAVAKLEDNVRRSARQGNQP-----KYLLSTIGLCG 1006257 S + PI+ +T+ +LE+ +++ + N P KY+LS + CG Sbjct: 236 KDS-----LFEGMHKPIIPYETYLKVQKELEERQQQTYERNNNPRPFQAKYMLSGMARCG 290 Query: 1006256 KCGATL--VSG---TNSRKQPTYRCGEHF-----HLTRQREPLDAMVTEAVLTRLSSVDV 1006107 CGA L V G + + Y C F +T + L+ L + + Sbjct: 291 YCGAPLKIVLGHKRKDGSRTMKYHCANRFPRKTKGITVYNDNKKCDSGTYDLSNLENTVI 350 Query: 1006106 HDLVMPQEDAGP------DREELLTERNALVERVKELSPLLRDIHQPVLEITAAINDVKA 1005945 +L+ QE+ + + + ++ +++ ++ ++ L ++++K Sbjct: 351 DNLIGFQENNDSLLKIINGNNQPILDTSSFKKQISQIDKKIQKNSDLYLNDFITMDELKD 410 Query: 1005944 RIDEIDAELLDRSVSVAAKLLEDIDESVGTAERREVVESKWKELDVDRRRMLVDELVT 1005771 R D + AE ++ D V + ++ EL D ++ +V+ LV+ Sbjct: 411 RTDSLQAEKKLLKAKISENKFND-STDVFELVKTQLGSIPINELSYDNKKKIVNNLVS 467 Score = 61.2 bits (147), Expect = 2e-07 Identities = 44/141 (31%), Positives = 78/141 (55%), Gaps = 11/141 (7%) Frame = +2 Query: 1044863 KLIGYARVSTRDQSTDR----QQTDLL-----AAGVRRDDLYVDHGVSGARASRPEFNRA 1045015 K+ Y RVST +Q+ + +Q D L A G + D Y D G SGA+ RP R Sbjct: 4 KVAIYTRVSTTNQAEEGFSIDEQIDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRL 63 Query: 1045016 LDALIDG--DTLVITTLDRLGRSTQNMLTFAEELRGRGAGLRVLNLGGGDVDTATPIGSM 1045189 ++ + + DT+++ LDRL RS ++ L +++ + + ++L +DT++ +GS+ Sbjct: 64 INDIENKAFDTVLVYKLDRLSRSVRDTLYLVKDVFTKNK-IDFISLNES-IDTSSAMGSL 121 Query: 1045190 LFTIMAALAQMEHEIKRERIT 1045252 TI++A+ + E E +ER+T Sbjct: 122 FLTILSAINEFERENIKERMT 142 >ref|YP_006499.1|Cin Length = 186 Score = 112 bits (281), Expect = 7e-23 Identities = 71/184 (38%), Positives = 101/184 (54%) Frame = +2 Query: 1044866 LIGYARVSTRDQSTDRQQTDLLAAGVRRDDLYVDHGVSGARASRPEFNRALDALIDGDTL 1045045 LIGY RVST +Q+T Q+ L +AG +L + SG +A RP + L L GDTL Sbjct: 2 LIGYVRVSTNEQNTALQRNALESAGC---ELIFEDKASGKKAERPGLKKVLRMLSRGDTL 58 Query: 1045046 VITTLDRLGRSTQNMLTFAEELRGRGAGLRVLNLGGGDVDTATPIGSMLFTIMAALAQME 1045225 V+ LDRLGRS ++++ EELR RG R L +DT+TP+G F +M ALA+ME Sbjct: 59 VVWKLDRLGRSMRHLVVLVEELRDRGINFRSLT---DSIDTSTPMGRFFFHVMGALAEME 115 Query: 1045226 HEIKRERITDSIKKRRDAGLDLGGRPRRITDSQVRNAIRLIEGGEPAAQAARDLGMSRAT 1045405 E+ ER + R G +GGR + + + RL+E G P Q A ++ +T Sbjct: 116 RELIVERTRAGLDAARAEG-RIGGRRPKYQEETWQQMRRLLEKGIPRKQVAIIYDVAVST 174 Query: 1045406 FYRR 1045417 Y++ Sbjct: 175 LYKK 178 >ref|YP_025041.1|putative transposase B Length = 280 Score = 110 bits (276), Expect = 3e-22 Identities = 75/270 (27%), Positives = 129/270 (47%), Gaps = 5/270 (1%) Frame = -3 Query: 1806229 IAVSSYYAFKKRLPSTRSRRDRELMVVIQDVYEANYSCYGARKMWKAINREYADRFGPVA 1806050 ++ + YY ++ PS R D +L I ++ YG K+ +N E + Sbjct: 7 VSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQPLQLRCS 66 Query: 1806049 RCTIERLMHRLSIDGVRRRRKRPKTASARAEECPGDLVEREFTAAAPNCLWVADITYVPT 1805870 I RLM L I V + + +AS E +L++++F+ N W AD+TY+ T Sbjct: 67 PRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYIQT 126 Query: 1805869 -RSGWVYTTFILDVFHREIVGWQVTNHMRESLARDALTMALAAKFRAGEDVSGLVHHSDR 1805693 R+GW Y + I+D+ R I+G+ + M L L A+ + G+ L+ H+D Sbjct: 127 KRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGD----LIIHTDL 182 Query: 1805692 GVQFRSIRYGETLAESEVVASVGSRGDSYDNAMAEALNSVYKAELIDR----REWSGLIE 1805525 G Q+ S Y + L E + S +G YDNA E+ ++ K E + ++ Sbjct: 183 GSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAA 242 Query: 1805524 VMAETSKWIRWYNRQRLHSAIGYRPPFELQ 1805435 V+ E +YNR+R+HS++GY+ P +++ Sbjct: 243 VLFEYVH--AFYNRKRIHSSLGYQTPLQVE 270 Score = 110 bits (276), Expect = 3e-22 Identities = 75/270 (27%), Positives = 129/270 (47%), Gaps = 5/270 (1%) Frame = +2 Query: 1793450 IAVSSYYAFKKRLPSTRSRRDRELMVVIQDVYEANYSCYGARKMWKAINREYADRFGPVA 1793629 ++ + YY ++ PS R D +L I ++ YG K+ +N E + Sbjct: 7 VSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQPLQLRCS 66 Query: 1793630 RCTIERLMHRLSIDGVRRRRKRPKTASARAEECPGDLVEREFTAAAPNCLWVADITYVPT 1793809 I RLM L I V + + +AS E +L++++F+ N W AD+TY+ T Sbjct: 67 PRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYIQT 126 Query: 1793810 -RSGWVYTTFILDVFHREIVGWQVTNHMRESLARDALTMALAAKFRAGEDVSGLVHHSDR 1793986 R+GW Y + I+D+ R I+G+ + M L L A+ + G+ L+ H+D Sbjct: 127 KRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGD----LIIHTDL 182 Query: 1793987 GVQFRSIRYGETLAESEVVASVGSRGDSYDNAMAEALNSVYKAELIDR----REWSGLIE 1794154 G Q+ S Y + L E + S +G YDNA E+ ++ K E + ++ Sbjct: 183 GSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAA 242 Query: 1794155 VMAETSKWIRWYNRQRLHSAIGYRPPFELQ 1794244 V+ E +YNR+R+HS++GY+ P +++ Sbjct: 243 VLFEYVH--AFYNRKRIHSSLGYQTPLQVE 270 >ref|NP_899539.1|PhoH domain protein Length = 235 Score = 110 bits (274), Expect = 5e-22 Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 18/218 (8%) Frame = +3 Query: 665682 TMGQHDYVKAIRNHT-------ITFGIGPAGTGKTYLAMAMAINALQHKEVSRIILTRPA 665840 T Q Y A++ F IG AGTGKT+LA + + + + I+ +P Sbjct: 19 TFNQEQYAAALQEEVGEDGSGAFVFAIGSAGTGKTWLATTLGADMYSAFDYTEFIILKPT 78 Query: 665841 VEAGESLGYLPGTLNEKIDPYVRPLYDALHDMVDPESIPLLIETGTIEVAPLAYMRGRTL 666020 + GE LGYLPGTL EK++P+++ + L D + + I P+ ++RG+T Sbjct: 79 LSCGEELGYLPGTLEEKMEPWIQTVTQPLKDRLGADKFK-CDWNKRIHAEPIQFVRGKTF 137 Query: 666021 NDAFIILDEAQNTTGEQMKMFLTRLGFGARMVVTGDVSQIDLPGKTRSGLNVVQDIL--- 666191 ++ FI++DEAQN T +++ +TR+G +MV GD+ Q D R+G + + Sbjct: 138 DNCFIVVDEAQNLTKTEIQTIMTRIGENTKMVFCGDLKQDDHKMIYRTGQKEISGLAWMV 197 Query: 666192 --------TGIEDLKFCHLGSKDVVRHSLVTKIVDAYD 666281 +GIE ++F +KDVVR +D D Sbjct: 198 NEIRNQQRSGIEIIEFT---NKDVVRSGACKLALDIID 232 Score = 80.9 bits (198), Expect = 3e-13 Identities = 48/162 (29%), Positives = 92/162 (56%), Gaps = 5/162 (3%) Frame = -1 Query: 1358586 GRAGTGKSALALMAGLQKVLEENKHSKIMVFRPIYAVGGQSLGFLPGSEGEKMNPWAEAV 1358407 G AGTGK+ LA G + +++ ++ +P + G + LG+LPG+ EKM PW + V Sbjct: 46 GSAGTGKTWLATTLGAD-MYSAFDYTEFIILKPTLSCG-EELGYLPGTLEEKMEPWIQTV 103 Query: 1358406 FDTLGALVSKNVIEEVMNRDLLDVLPLTHIRGRSLHDAFVIVDEAQSLERNVLLTVLSRI 1358227 L + + + N+ + P+ +RG++ + F++VDEAQ+L + + T+++RI Sbjct: 104 TQPLKDRLGADKFKCDWNKRI-HAEPIQFVRGKTFDNCFIVVDEAQNLTKTEIQTIMTRI 162 Query: 1358226 GMNSKVVLTHDVAQRDN---LRVGRHD--GVAAVIEKLKGHE 1358116 G N+K+V D+ Q D+ R G+ + G+A ++ +++ + Sbjct: 163 GENTKMVFCGDLKQDDHKMIYRTGQKEISGLAWMVNEIRNQQ 204 >ref|NP_817990.1|gp17 Length = 1183 Score = 109 bits (273), Expect = 6e-22 Identities = 67/189 (35%), Positives = 103/189 (54%) Frame = -1 Query: 57621 RLRSIDSANAQLKGLGYSAKDVENISGQVATALEGGMMTLGEGTRVAAGGLAAGVEQGKE 57442 RL++ID+A +L+ LG+SA DV+ I +++G L AA +AAGV G+ Sbjct: 130 RLKNIDNAKFKLEALGHSASDVKTIMDSALKSVKGTAFGLDSAANTAATAVAAGVPTGQS 189 Query: 57441 LEKYIGLVDAAAIGMNTSVDETAMIFNRVQGSGKVMTEELQMVEQRMPGFSNALQEHIGV 57262 L Y+ V AA TS+D+ IFN+VQ +GK MT++LQM+ R LQ+ GV Sbjct: 190 LTDYLSNVADAAAIAQTSLDDMGSIFNKVQTNGKAMTDDLQMLADRGLPIFTWLQKQYGV 249 Query: 57261 ASDDEFKKMVTAGEVGSDAFLETMDTFAGDMAKEHAKSFDGLVDLAKAYVGQIGEAMLGG 57082 + + +KMV+ G+V + F + A++ +SFDG V A +G++G +LG Sbjct: 250 -TGEALQKMVSDGKVSAADFQRAVHDNIAGSAQKMGQSFDGAVQNLDAALGRLGATLLGV 308 Query: 57081 VFEQSKDSI 57055 FE + I Sbjct: 309 PFENASGGI 317 >ref|YP_024521.1|putative DNA repair protein Length = 418 Score = 108 bits (271), Expect = 1e-21 Identities = 94/318 (29%), Positives = 150/318 (47%), Gaps = 38/318 (11%) Frame = +1 Query: 301720 IPTGSIALDIALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQKTGGIAAFIDAEHAL 301899 IPT D LG GG+P GR+ E+YG SGK+T A+H A + G I +ID E Sbjct: 41 IPTMVPQYDYILG-GGIPLGRLTEVYGLTGSGKSTFAVHLSRIATQLGVITIWIDIEGTA 99 Query: 301900 DPEYAKKLGVDTDQLLVSQPDTG----------EQALEIADMLIRS------GALDVIVI 302031 D ++LGVD +L Q G EQ + + I + G V + Sbjct: 100 DNNRMEQLGVDVSKLFSIQSGEGRLKNTVELSVEQVGKELEYWIDTFNEKIPGVPIVFIW 159 Query: 302032 DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKIAGALSQSKTTAIFINQLREKVGV-F 302208 DS+ A + EI+G + + +GL+A + + + L+ + T I INQ R+ + Sbjct: 160 DSLGATRTQKEIDGGIDEKQMGLKASATQKVINAVTPKLNDTNTGLIVINQARDDMNAGM 219 Query: 302209 FGSPETTSGGKALKFYASVRIDVRRIETLKE-----GQDAV-GNRTRAKIVKNKIAPPFK 302370 +G P ++GG+A + AS+RI V + LK+ G+D G+ R + K+K++ P + Sbjct: 220 YGDPIKSTGGRAFEHSASLRIKVHKASQLKQKSELTGKDEYHGHIMRIETKKSKLSRPGQ 279 Query: 302371 QAEFDI------------IYGQGISREGSLIDMGVDNGIIRKSGSWFTY---DGDQLGQG 302505 +AE D+ I GI E ++ V+ G+I K G+W Y +G+++ Sbjct: 280 KAEADLLSDYMVGKEDDPILLNGIDLEHTVYKEAVERGLITK-GAWRNYVTLNGEEIKLR 338 Query: 302506 KENVRNFLRDNPGLAEEI 302559 L+DN L E+ Sbjct: 339 DAEWVPVLKDNKELYLEL 356 >ref|YP_164688.1|recombinase A Length = 405 Score = 107 bits (266), Expect = 4e-21 Identities = 94/317 (29%), Positives = 153/317 (48%), Gaps = 29/317 (9%) Frame = +1 Query: 301720 IPTGSIALDIALGIGGLPR-GRVVEIYGPESSGKTTVALHAVANAQKTGGIAAFIDAEHA 301896 IPT ALD L + G+P GRV E++G SSGK+T+ + NA K I + D E Sbjct: 34 IPTLIPALDKNL-VSGIPSSGRVTEVFGLPSSGKSTLMGLVMKNALKMNVIPIYFDVEET 92 Query: 301897 LDPEYAKKLGVDTDQLLVSQPDTGEQAL-------EIADMLIRSGA---------LDVIV 302028 +D E + LGVD +++ P+ + EI + ++ A + + Sbjct: 93 MDSERLEGLGVDPSKVITVTPEINKDNTVTPLYIEEITNYIVNMAAKIHSQSSELTSMFI 152 Query: 302029 IDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKIAGALSQSKTTAIFINQLREKVGVF 302208 IDSV K E + + VG QA+ ++ RK+ LS + I +NQ R+ + Sbjct: 153 IDSVGFTQSKLEANTDSESATVGQQAKALAIMARKVQANLSYNNGMLIGLNQGRDDMKAP 212 Query: 302209 FGSPETTS--GGKALKFYASVRIDVRRIETLK---EGQDAVGNRTRAKIVKNKIAPPFKQ 302373 T GGK + + S R+ +++ +K ++AVG T+ +VK+K+ Sbjct: 213 NPKYAQTKSLGGKGWEHFTSSRLRIQKTTAIKMHNSDKNAVGFDTKVTVVKSKVGDNVTD 272 Query: 302374 A-EFDIIYGQGISREGSLIDMGVDNGIIRKSGSWFTY---DGDQL-GQGKENVRNFLRDN 302538 A ++ +G RE ++ GVD GII+ SG W+TY DG+Q+ QG + ++L+ + Sbjct: 273 AVTIKLLGARGFDRETNIFYGGVDEGIIKGSG-WYTYVNDDGEQIKKQGWVDFVSYLKSD 331 Query: 302539 PG--LAEEIELKIKHKM 302583 G A EI K+ K+ Sbjct: 332 EGKETANEIWRKVALKV 348 >ref|NP_690687.1|structural protein Length = 646 Score = 106 bits (265), Expect = 5e-21 Identities = 83/349 (23%), Positives = 143/349 (40%), Gaps = 14/349 (4%) Frame = -1 Query: 56568 KMWSAFMDWLGQAWEWIKXXXXXXXXXXXXXXXXA-----------WNWVKDTSVAIWNG 56422 K+W A WL AW IK WN +K S +WNG Sbjct: 294 KIWGAVSKWLSDAWNKIKQAASVVWQALVTLIKKNFEMQKKIVTTVWNTIKSVSSKVWNG 353 Query: 56421 FISWIVGLWNGIIGTAKAVFLGIGTAIITAW-NWIKTKTSDVWNAIINWIKDTWNKIITT 56245 S++ +WNGI+ K V+ G+ T TAW N+ K S +WNA+ + W I++ Sbjct: 354 IKSFLSSVWNGIVNAGKTVWNGLKT-FFTAWLNFQKKTWSTIWNAVKTAVTKVWKGIVSV 412 Query: 56244 ISDAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKVQQIKNWITNTW 56065 N +K++ + K + + +WN +K A+ TN W Sbjct: 413 GKTVWNGLKSFFTSWLNGQKKLFSTVWNAVKTAV----------------------TNVW 450 Query: 56064 NRVKNTTSNAWSGIKSAVRNGINGAVNFVRRLPGRALSALGNIGSKLYNSGKAMIDGFKD 55885 N++K+ S+ ++ +KS+V N +N + ++ + +S G L + G+ ++ G + Sbjct: 451 NKLKSAASSTFNALKSSVTNIMNKVKDKIKSIWNSVMSFFK--GINLGSIGRNIMQGLIN 508 Query: 55884 GIXXXXXXXXXXVKDGLSRIRNFFPFSPAKEGPFSGKGWTWYS--GQSMSEGLADGMASG 55711 G+ V SR+ N P + K G + GL G+ Sbjct: 509 GV----TSMWGRVTSTFSRLTNAIPKTIKKILGIHSPSRLMRDEIGYHIGTGLVKGITGT 564 Query: 55710 TSDVVRQSEALMKAAAFDAPSIPGMTRPSSSASGLDEDTGPTSNINFHI 55564 V + + +L K+A + P++P + SS + G+ E + S NF + Sbjct: 565 EGMVTKAAASLAKSAVPEVPTVPELAVNSSYSGGMVEQSVNASLENFDL 613 Score = 91.3 bits (225), Expect = 2e-16 Identities = 71/298 (23%), Positives = 122/298 (40%), Gaps = 34/298 (11%) Frame = -1 Query: 56415 SWIVGLWNGIIGTAKAVFLGIGTAIITAWNWIKTKTSDVWNAIINWIKDTWNKI------ 56254 SW++ + G IG A + + II W+ IK T +W A+ W+ D WNKI Sbjct: 259 SWVIAM--GPIGWITAAVIALVALIIANWDKIKEYTVKIWGAVSKWLSDAWNKIKQAASV 316 Query: 56253 -----ITTISDAVNKVKNWISDAWTMIKTMTAKLWNGIK---MAIARAIVSAVRTVQGKV 56098 +T I K ++ W IK++++K+WNGIK ++ IV+A +TV + Sbjct: 317 VWQALVTLIKKNFEMQKKIVTTVWNTIKSVSSKVWNGIKSFLSSVWNGIVNAGKTVWNGL 376 Query: 56097 Q---------QIKNW----------ITNTWNRVKNTTSNAWSGIKSAVRNGINGAVNFVR 55975 + Q K W +T W + + W+G+KS + +NG Sbjct: 377 KTFFTAWLNFQKKTWSTIWNAVKTAVTKVWKGIVSVGKTVWNGLKSFFTSWLNGQKKLFS 436 Query: 55974 RLPGRALSALGNIGSKLYNSGKAMIDGFKDGIXXXXXXXXXXVKDGLSRIRNFFPFSPAK 55795 + +A+ N+ +KL ++ + + K + +K + + +FF Sbjct: 437 TVWNAVKTAVTNVWNKLKSAASSTFNALKSSVTNIMNKVKDKIKSIWNSVMSFF------ 490 Query: 55794 EGPFSGKGWTWYS-GQSMSEGLADGMASGTSDVVRQSEALMKAAAFDAPSIPGMTRPS 55624 KG S G+++ +GL +G+ S V L A I G+ PS Sbjct: 491 ------KGINLGSIGRNIMQGLINGVTSMWGRVTSTFSRLTNAIPKTIKKILGIHSPS 542 >ref|NP_795678.1|putative helicase Length = 440 Score = 106 bits (264), Expect = 7e-21 Identities = 120/464 (25%), Positives = 211/464 (45%), Gaps = 23/464 (4%) Frame = -2 Query: 324320 LRPYQQEGFSWLAALWSSGLGGILADDMGLGKTLQALSLFTHIKNTTANASPILVVAPTS 324141 L YQ+ +W+ GL DMGLGKTL LS I+N + IL+VAP Sbjct: 3 LHEYQEYAKTWIVEHPYCGL----LLDMGLGKTLTTLSAIDEIQNIFSEDHKILIVAPKK 58 Query: 324140 VMS-TWRAEAEKFAPGLRVTTISATEKKRKTALALEIEDADLVITSYAILRLDAQAFRSI 323964 V TW E K+ + + +E KR AL E AD+ + + + + +++ Sbjct: 59 VAEETWPTEIGKWHFDFTYSKVLGSEGKRIEALETE---ADIYLINRENVTWLVEYYKTK 115 Query: 323963 QWDTFV-LDEAQFVKNRTAKVHTAAKGIQARFR--LAITGTPMENSLTDLWSLYSITSPG 323793 TFV +DE K+ +K A + ++ + + + +TGTP NSL DLW + G Sbjct: 116 WPFTFVVIDELSSFKSSKSKRFRALRKVRPKVQRLVGLTGTPAPNSLIDLWPQIYLMDRG 175 Query: 323792 --LLPGIEKFRREIVLPIESGESPEGMALLRRRIRPFMKRR--NK------ELVAAD--- 323652 L +F+ + +P + G+ + +R + NK + A D Sbjct: 176 ARLETSQTRFKDKYFVP----DKRNGLIIYSWALRDGAEAEIYNKIEDICVSMKAKDYLK 231 Query: 323651 LPPKQEQILSVELSSK--HRDLYNTVLQKERKKLLGLINDMDRNRFAIFRSLTLLRMLAI 323478 LPP+ ++SV+LS+ ++ L ++ + + K + N A+ + LL+M Sbjct: 232 LPPRTNNVVSVKLSNMKAYKQLEADLVLEFKNKEISAANS------AVLAN-KLLQMANG 284 Query: 323477 DPYLIDEKYEAIGSSKLSALFSHLDDIIAEGHRTIIFSQFTSFLSRVGEQLDHRNINYCY 323298 Y D+ AI KL AL + +++ ++G ++F Q+ L R+ ++ Sbjct: 285 AIYDDDKATVAIHDDKLDALENVVEE--SQGQPILVFYQYQHDLERLKKRFPQAE----- 337 Query: 323297 LDGSTRNRGAVIDDFRAGEAPIFLISLKAGGFGLTLTEADYVFLLDPW----WNPAVEAQ 323130 +D + +G+ PI L ++ G GL L + ++ + W W+ Q Sbjct: 338 -------ELTSVDKWNSGKIPILLCHPQSAGHGLNLQKGGHIIV---WFGLTWSLEYYQQ 387 Query: 323129 AVDRAHRIGQTKNVMVYRMVSEKTIEEKVLALQERKAQLFDSLV 322998 A R R GQT+ V+V+ +V+E T++EKVL + + K + ++L+ Sbjct: 388 ANARLDRQGQTEPVIVHHIVAENTVDEKVLRILQGKEKNQNALL 431 Score = 43.5 bits (101), Expect = 0.053 Identities = 33/109 (30%), Positives = 51/109 (46%) Frame = +2 Query: 417380 EQQDVVESFKKKSSPIRVLVTGDLASEGVNLHSQCHELVHFDIPWSLIRIEQRNGRIDRY 417559 E+ V+ + PI +L A G+NL H +V F + WSL +Q N R+DR Sbjct: 337 EELTSVDKWNSGKIPI-LLCHPQSAGHGLNLQKGGHIIVWFGLTWSLEYYQQANARLDRQ 395 Query: 417560 GQTQRPQITTLVLQPDSERFSGDIRVLKKLIEKENEAHTALGDAAALMG 417706 GQT+ + +V + + D +VL+ L KE + L A +G Sbjct: 396 GQTEPVIVHHIVAEN-----TVDEKVLRILQGKEKNQNALLEAVKAQLG 439 >ref|NP_818041.1|gp68 Length = 215 Score = 105 bits (262), Expect = 1e-20 Identities = 47/78 (60%), Positives = 61/78 (78%) Frame = -1 Query: 1418880 LSLLFGAAEDGELSWQDQALCAQTDPEAFFPEKGGSTREAKRVCASCDVRSDCLEYALAN 1418701 LS + ED +W+DQALC+Q DPE FFPEKGG+ + AKR+C CDVR +CL++AL N Sbjct: 6 LSFMLAPVEDKH-AWRDQALCSQVDPELFFPEKGGNAKPAKRICGMCDVRDECLQWALDN 64 Query: 1418700 DERFGIWGGMSERERRRL 1418647 +E+FGI+GG+SERERR L Sbjct: 65 NEQFGIFGGLSERERRPL 82 Score = 64.7 bits (156), Expect = 2e-08 Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 2/67 (2%) Frame = +3 Query: 1373196 WRHRAACLNEDPELFFPI--GNTGPALLQIEEAKTVCRRCEVVETCLQWALESGQDAGVW 1373369 WR +A C DPELFFP GN PA K +C C+V + CLQWAL++ + G++ Sbjct: 19 WRDQALCSQVDPELFFPEKGGNAKPA-------KRICGMCDVRDECLQWALDNNEQFGIF 71 Query: 1373370 GGLSEDE 1373390 GGLSE E Sbjct: 72 GGLSERE 78 >ref|NP_817403.1|gp65 Length = 215 Score = 105 bits (261), Expect = 1e-20 Identities = 47/78 (60%), Positives = 61/78 (78%) Frame = -1 Query: 1418880 LSLLFGAAEDGELSWQDQALCAQTDPEAFFPEKGGSTREAKRVCASCDVRSDCLEYALAN 1418701 LS + ED +W+DQALC+Q DPE FFPEKGG+ + AKR+C CDVR +CL++AL N Sbjct: 6 LSFMLAPVEDKH-AWRDQALCSQVDPELFFPEKGGNAKPAKRICGICDVRDECLQWALDN 64 Query: 1418700 DERFGIWGGMSERERRRL 1418647 +E+FGI+GG+SERERR L Sbjct: 65 NEQFGIFGGLSERERRPL 82 Score = 63.9 bits (154), Expect = 4e-08 Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 2/67 (2%) Frame = +3 Query: 1373196 WRHRAACLNEDPELFFPI--GNTGPALLQIEEAKTVCRRCEVVETCLQWALESGQDAGVW 1373369 WR +A C DPELFFP GN PA K +C C+V + CLQWAL++ + G++ Sbjct: 19 WRDQALCSQVDPELFFPEKGGNAKPA-------KRICGICDVRDECLQWALDNNEQFGIF 71 Query: 1373370 GGLSEDE 1373390 GGLSE E Sbjct: 72 GGLSERE 78 >ref|NP_665964.1|putative plasmid partitioning protein Soj Length = 256 Score = 104 bits (259), Expect = 3e-20 Identities = 66/209 (31%), Positives = 113/209 (54%), Gaps = 5/209 (2%) Frame = +3 Query: 488925 IAMVNQKGGVGKTTSSINLGASLAAYGRKMLLVDFDPQGALSVGLGVNP-YD--LEISVY 489095 I + NQKGG GKTT+++N+ +L G +L++D DPQG + GLG YD S++ Sbjct: 3 IGVTNQKGGAGKTTTTLNVAGALNQLGNDVLVIDLDPQGHATEGLGFEDLYDDPERDSLF 62 Query: 489096 NLLMN-SRLDPHEVIVGTDFDNIDILPANIDLSAAEVQLVGEVAREQILSRVLSKVADEY 489272 ++L R+D E +V + +D +P++ + AE L + RE+ L +L + Sbjct: 63 DVLPELERMDELEQLV-VEHQEVDCVPSHETMINAEDALANVMKREERLEMLLDDADGRW 121 Query: 489273 DVILIDCQPSLGLLTVNALTAAHGVIIPLETEFFALRGVALLVETIEKIQDRLNPSLVVD 489452 D +L+DC P+LG+LT NA+ A V+IP + + ++R + LL + + I+ P VD Sbjct: 122 DYVLVDCPPNLGVLTDNAIVATGNVLIPAQAKSTSIRAIELLFKQLRSIESAFGP---VD 178 Query: 489453 GILATMFDSRT-LHSKEVMSRVTEAFDDK 489536 + + + E+M+ + F+DK Sbjct: 179 ELALVANEVEVDGEADEMMAWFRDVFEDK 207 Score = 60.8 bits (146), Expect = 3e-07 Identities = 56/204 (27%), Positives = 84/204 (41%), Gaps = 4/204 (1%) Frame = +1 Query: 902836 KGGVGKTSVTLGLASAAYNRGIPTLVVDMDPQADSSTGLD----VPTSTRVDIADVLAAP 903003 KGG GKT+ TL +A A G LV+D+DPQ ++ GL R + DVL Sbjct: 9 KGGAGKTTTTLNVAGALNQLGNDVLVIDLDPQGHATEGLGFEDLYDDPERDSLFDVLPEL 68 Query: 903004 KSQKILSEAIIPSGWVGDKLGHLDVISGSPRAAEFDRPSLSERYLRRLEDALSRVAKGYR 903183 + L + ++ V H +I+ A + ER L+DA R + Sbjct: 69 ERMDELEQLVVEHQEVDCVPSHETMINAEDALANVMK--REERLEMLLDDADGR----WD 122 Query: 903184 LVLIDCPPSLNGLTRTAWTASSRVAVVTEPSLFSVXXXXXXXXXXXXXXQRGTSDIQPLG 903363 VL+DCPP+L LT A A+ V + + S+ + + L Sbjct: 123 YVLVDCPPNLGVLTDNAIVATGNVLIPAQAKSTSI-RAIELLFKQLRSIESAFGPVDELA 181 Query: 903364 LVVNRVRAGSNEHDYRISEMREMF 903435 LV N V E D ++ R++F Sbjct: 182 LVANEVEV-DGEADEMMAWFRDVF 204 >ref|NP_818603.1|gp65 Length = 653 Score = 103 bits (256), Expect = 6e-20 Identities = 122/509 (23%), Positives = 205/509 (40%), Gaps = 82/509 (16%) Frame = +3 Query: 367581 VLADDMGLGKTVQLXXXXXXXXXXXXXXXXXXXXTSAPTLLLCPMSLIG-NWEAEVARF- 367754 V+AD GLGKT+Q+ T L++ P + + W E+AR+ Sbjct: 145 VIADQPGLGKTLQVIAALLEMQ------------TRGAILVVAPKTAVEVTWPDEIARWI 192 Query: 367755 APSLRILVYYGSARP-----------------------RGDAFDAALAESDLVITTYATA 367865 P+ + V A+P G ++ AE D Y Sbjct: 193 GPNENVFVINSEAKPDERKARVLRAKALAEQGERVWVLTGSSYIRIKAEFD----DYGNY 248 Query: 367866 SRD-------------IAELERIGWVRVVLDEAQVI--------KNRLSQTTK--AIRRL 367976 RD +A+L R+ + V++DE+Q + K +Q T A+ + Sbjct: 249 LRDEKKQKIVRAVGHTVADLFRMSFSAVIVDESQEVLACSTGNKKKWSAQRTGMGALDIV 308 Query: 367977 NGGQKIALTGTPVENRLSELWSIMDFVNPGMLGTPEKFRERFVRPIEVRADEERAHRLRR 368156 G +IA++GTP + +W ++++ P + K+ R ++ D AH + Sbjct: 309 PGAPRIAISGTPFRGKTENIWGTLNWLAPKKYTSYWKWVRRHYGVVD-NWDSGEAHMEKG 367 Query: 368157 IT-----------RPYILRRTKTDPRI--------------IDDLPEKIEIKQHYRLTVE 368261 T RP ++RRT + R +D K + LT + Sbjct: 368 DTIRDEKRFFSELRPILIRRTHAELRRQGFITGEKLYGGTPLDPNDPKSPVAVWLPLTPK 427 Query: 368262 QASLYQSVVAEMMGRIEESSGIERRGLV---LAAMTKLKQVCNHPAHLLHDGSAIGQR-- 368426 Q Y ++ + + +E +G + +V LA M +LKQV GSA+G Sbjct: 428 QQKQYDQILKDAVITLESLAGEKDEVVVNGSLAEMVRLKQVA---------GSALGLDVK 478 Query: 368427 ----SGKLERFEEIMSETLAEGDRVLCFTQFTDFGEMLVPHLAAKFDTDVAYLAGSTSKQ 368594 S K+E + +SE ++ G + + +QFT F E+L Y G T Sbjct: 479 PELPSNKIEWIKNFLSERISAGTKTVVASQFTQFLELLSRECDKAGIRHYLY-TGKTVGS 537 Query: 368595 RRTQIVKDFQEPDGPKIFVLSLKAGGTGLNLTAANQVVHLDRWWNPAVENQATDRAFRIG 368774 R +I +FQ G + +L+ K+GG L L AA+ VV D+ W P + Q +RA+ Sbjct: 538 ERARIKHEFQSESGEMVVLLNTKSGGLSLTLDAADDVVVCDQTWIPDDQEQVENRAYGRE 597 Query: 368775 QKRRVQVRKFIGIGTLEERIDAILEEKKE 368861 + V + +GT++E I A+L ++E Sbjct: 598 RDHNVNIWNLCSLGTIDEDI-AVLNLQRE 625 Score = 92.8 bits (229), Expect = 8e-17 Identities = 130/527 (24%), Positives = 222/527 (42%), Gaps = 77/527 (14%) Frame = -2 Query: 324326 ATLRPYQQEGFSWLAALWSSGLGGILADDMGLGKTLQALSLFTHIKNTTANASPILVVAP 324147 A +P+Q G AA S ++AD GLGKTLQ ++ ++ A ILVVAP Sbjct: 125 ADRKPWQIPG----AAFVVSQKEVVIADQPGLGKTLQVIAALLEMQTRGA----ILVVAP 176 Query: 324146 -TSVMSTWRAEAEKF-APGLRVTTISATEKK--------RKTALALEIEDADLVITSYAI 323997 T+V TW E ++ P V I++ K R ALA + E V+T + Sbjct: 177 KTAVEVTWPDEIARWIGPNENVFVINSEAKPDERKARVLRAKALAEQGERV-WVLTGSSY 235 Query: 323996 LRLDAQ--------------------------AFRSIQWDTFVLDEAQFV-------KNR 323916 +R+ A+ FR + + ++DE+Q V K + Sbjct: 236 IRIKAEFDDYGNYLRDEKKQKIVRAVGHTVADLFR-MSFSAVIVDESQEVLACSTGNKKK 294 Query: 323915 TAKVHT---AAKGIQARFRLAITGTPMENSLTDLWSLYSITSPGLLPGIEKFRRE---IV 323754 + T A + R+AI+GTP ++W + +P K+ R +V Sbjct: 295 WSAQRTGMGALDIVPGAPRIAISGTPFRGKTENIWGTLNWLAPKKYTSYWKWVRRHYGVV 354 Query: 323753 LPIESGES---------------PEGMALLRRRIRPFMKRRN---KELVAADLP-----P 323643 +SGE+ E +L RR ++R+ E + P P Sbjct: 355 DNWDSGEAHMEKGDTIRDEKRFFSELRPILIRRTHAELRRQGFITGEKLYGGTPLDPNDP 414 Query: 323642 KQEQILSVELSSKHRDLYNTVLQKERKKLLGLINDMDRNRF-AIFRSLTLLRMLAIDPYL 323466 K + + L+ K + Y+ +L+ L L + D + L+ +A Sbjct: 415 KSPVAVWLPLTPKQQKQYDQILKDAVITLESLAGEKDEVVVNGSLAEMVRLKQVAGSALG 474 Query: 323465 IDEKYEAIGSSKLSALFSHLDDIIAEGHRTIIFSQFTSFLSRVGEQLDHRNINYCYLDGS 323286 +D K E + S+K+ + + L + I+ G +T++ SQFT FL + + D I + G Sbjct: 475 LDVKPE-LPSNKIEWIKNFLSERISAGTKTVVASQFTQFLELLSRECDKAGIRHYLYTGK 533 Query: 323285 T--RNRGAVIDDFRAGEAP-IFLISLKAGGFGLTLTEADYVFLLDPWWNPAVEAQAVDRA 323115 T R + +F++ + L++ K+GG LTL AD V + D W P + Q +RA Sbjct: 534 TVGSERARIKHEFQSESGEMVVLLNTKSGGLSLTLDAADDVVVCDQTWIPDDQEQVENRA 593 Query: 323114 HRIGQTKNVMVYRMVSEKTIEEKVLALQ-ERKAQLFDSLVNEGEGFS 322977 + + NV ++ + S TI+E + L +R+ +F ++++ G S Sbjct: 594 YGRERDHNVNIWNLCSLGTIDEDIAVLNLQREGDIF-AVLDSARGVS 639 Score = 49.7 bits (117), Expect = 7e-04 Identities = 106/506 (20%), Positives = 198/506 (39%), Gaps = 36/506 (7%) Frame = -3 Query: 409882 ISIQGALLADDMGLGKTFMTLVALRDFAARQREMRGEAKPILAVLPLSLIE-NWEDELKN 409706 +S + ++AD GLGKT + AL + R IL V P + +E W DE+ Sbjct: 139 VSQKEVVIADQPGLGKTLQVIAALLEMQTR--------GAILVVAPKTAVEVTWPDEIAR 190 Query: 409705 AFDEPPFDDVVVLQSSRDQDRFKIDGRGAETQASADSLDDQGMVNAES-LRLSLRVGASQ 409529 P ++V V+ S D K R +A A+ + ++ S +R+ Sbjct: 191 WIG--PNENVFVINSEAKPDERK--ARVLRAKALAEQGERVWVLTGSSYIRIKAEFDDYG 246 Query: 409528 KDRRLDKPGRLVLTTYQNLGRFQLSLGQVEWGAVVFDEAQQI------KNPEILTSRAAK 409367 R +K ++V + +G L ++ + AV+ DE+Q++ + R Sbjct: 247 NYLRDEKKQKIV----RAVGHTVADLFRMSFSAVIVDESQEVLACSTGNKKKWSAQRTGM 302 Query: 409366 G----LQADFKLLCTGTPVENSLRDIWSLLDTAQPDLLGSWAEFRERWIKNVENLPVGE- 409202 G + ++ +GTP +IW L+ P S+ ++ R V+N GE Sbjct: 303 GALDIVPGAPRIAISGTPFRGKTENIWGTLNWLAPKKYTSYWKWVRRHYGVVDNWDSGEA 362 Query: 409201 QVVQGRELRE------HIGRFMLRRTKEDNIQDLPSRTVYTGLAEEAAAGS-LKPGYVYD 409043 + +G +R+ + ++RRT +L + TG E+ G+ L P Sbjct: 363 HMEKGDTIRDEKRFFSELRPILIRRTH----AELRRQGFITG--EKLYGGTPLDPNDPKS 416 Query: 409042 P-RLMNDMPGAQRMAYDQVL------------ESHRPRKGGALETIQKLRSV---SLHPA 408911 P + + Q+ YDQ+L E G+L + +L+ V +L Sbjct: 417 PVAVWLPLTPKQQKQYDQILKDAVITLESLAGEKDEVVVNGSLAEMVRLKQVAGSALGLD 476 Query: 408910 TVPEFGASWSAAESARINGMIEVLDEIREADEKAIIFVISKTVQTRLAVWLHERYGITPK 408731 PE S +I + L E A K ++ T L ++ GI Sbjct: 477 VKPEL-------PSNKIEWIKNFLSERISAGTKTVV-ASQFTQFLELLSRECDKAGIRHY 528 Query: 408730 IVNGETKAVASGSKKANLTRKGIITDFEAQSGFNLIIMSPXXXXXXXXXXXANHAIHLER 408551 + G+T GS++A + +F+++SG +++++ A+ + ++ Sbjct: 529 LYTGKT----VGSERARIKH-----EFQSESGEMVVLLNTKSGGLSLTLDAADDVVVCDQ 579 Query: 408550 HWNPAKEAQATDRIYRIGQTRPVHVY 408473 W P + Q +R Y + V+++ Sbjct: 580 TWIPDDQEQVENRAYGRERDHNVNIW 605 >ref|NP_899293.1|topoisomerase II large subunit Length = 597 Score = 103 bits (256), Expect = 6e-20 Identities = 167/706 (23%), Positives = 270/706 (38%), Gaps = 26/706 (3%) Frame = +3 Query: 571887 HLSVLSGLEAVRKRPGMYIGTTDSR-----------------GLMHCLWEIIDNAVDEAL 572015 + +LS + V KRPGMYIG+ D GL+ + E+IDN++DEA+ Sbjct: 6 NFQILSDKQHVLKRPGMYIGSVDREAHERFVLGEYKQIEYVPGLVKIINEVIDNSLDEAI 65 Query: 572016 GG-FGKSILIELEPDGS-VAVTDSGRGIPVD--IEPKTG-LTGVEVVLTKLHAGGKFGGS 572180 F + +IE++ +G+ + + D+GRGIP D I+P L E T+ AG F Sbjct: 66 RTKFKFANVIEVKVEGNRITIADNGRGIPQDKVIDPHGNELLRPEAAWTRTKAGSNFEDD 125 Query: 572181 SYAASGGLHGVGASVVNALSARLDVEVTRGSKVHKMSFRRGVPGRFDDSSGQPGPDNPFE 572360 G++GVGA++ N S + + G +S F Sbjct: 126 RTTV--GMNGVGAALTNYFSHQFIGKTCDGKNTVTVSCSNNAERIF-------------- 169 Query: 572361 EFHEPTGLDVVRKAKKGVTGTRVQYWADPQIFLSKAQFDYQHLVERARQTAFLVPGLELR 572540 VR +K G GT V++ D F V G+ + Sbjct: 170 ----------VRTSKGGTQGTSVEFIPD--------------------FNRFGVFGISPQ 199 Query: 572541 IEDRRGVARDETGEVIAERLEVFRFDGGITEFVDHLSIDPPMTDTWRLQDTGKFS--ETV 572714 E E+I +RL LS+ P + T K++ + Sbjct: 200 DE-----------EIIKDRLAA-------------LSVAFP-------EITFKYNGKKHA 228 Query: 572715 PVLDSSGHLVSKEVEREVGVDIALRWGTGYDTKVKSFVNVVSTPHGGTHLAGFEQASLKA 572894 P L + +V E ++AL + + SF+N V T +GGTH+ F Sbjct: 229 PTLKQYAKMFGTDVSFEFD-NVALFIAASDEFRHNSFINGVHTINGGTHVDYFSNKLADE 287 Query: 572895 MRKAVEANARXXXXXXXXXXXXXVLAGLTAVVTVQ-LAEPQFEGQTKEVLGTAAVRQIVA 573071 + ++ + GLT + ++ +P+F+ QTKE L ++ Sbjct: 288 LIPMIKRKHKINVPKPQLKN------GLTIGLFIRNFVDPKFDSQTKERLTSSQ------ 335 Query: 573072 KTVERQLGDILSSTKRAEKQQAAVLMEKVVAELKSRISARTHKENQRRKTALEASSLPAK 573251 V L DI S K A+K A + ++ + + A+ H R + + AK Sbjct: 336 GDVSPYLKDI-SYDKIAKKILAD---DDIIMPIIEALLAKQHAAEARELARKQKKAQNAK 391 Query: 573252 LYDCRDNGVENTELFIVEGDSAMGTAKAARNSDHQALFPIRGKILNVQKASLSDMLANVE 573431 + D + LF+ EG SA+G R+S P+RGK+L+ + ++ N E Sbjct: 392 VVDHIKATMPGGTLFLTEGKSAIGYLIKVRDSKKHGGIPLRGKVLSTWGKRPAKIMENKE 451 Query: 573432 CAALIQVIGAGSGRSFDIDAARYGRVIIMTDADVDGAHIRTLLLTLFFRYMKPLVEQGRV 573611 ++ V+ G DI Y + I+ DADVDG LL FF L +Q R+ Sbjct: 452 LCDIMSVLNIQLGND-DIRDMYYHDIGILVDADVDGKGSIFPLLLAFFYNWPELYKQKRI 510 Query: 573612 -FAAVPPLHRVEVVTKRGTPNDVIYTYSXXXXXXXXXXXXXXXXXXXXPIQRYKGLGEMD 573788 F P V + T + + + YS I+ KGLG + Sbjct: 511 KFVRTP----VVIATNK---KETKWFYS-------IDEYRKAKLSKTWKIRYIKGLGSLT 556 Query: 573789 ADQLAETTMDPSMRTLRRVTMADAEAAENTFELLMGSSVGPRKEFI 573926 + + +P + + D + FELL G RK+++ Sbjct: 557 EKEYKKVINEP---VFDEIVIDD----PSCFELLFGDDTDKRKDWM 595 >ref|NP_046572.1|ABC transporter Length = 705 Score = 102 bits (255), Expect = 7e-20 Identities = 101/464 (21%), Positives = 195/464 (42%), Gaps = 5/464 (1%) Frame = -1 Query: 1114002 FGHMHSLDLRHFEGSEAGSLMTRMTVDIDSLARFMQTGLVNGIMSLVTMVGIAVAMFVFH 1113823 F + L + FE E G +++R I + F V I+ ++ ++G+ V ++ + Sbjct: 246 FNKVTKLPINFFENREDGEVISRFNDGI-YIKDFFSANFVTAIIDIILILGLGVILYRTN 304 Query: 1113822 XXXXXXXXXXXXXXXXATVVF-RHLSSRAYLQARTEIRDVNRNLQEN-IDGLRTVQAHGK 1113649 ++F HL + Q E + + +L N + + TV + K Sbjct: 305 NILFLTIILPILLLSCLAILFFDHLKKKN--QKLMEDKAKSTSLLINFLKNMTTVYSLNK 362 Query: 1113648 QKAAISSFNRLSDKHRSTRTKAQQYIAVYFPFVSFLAETSYALVLGVGATLVARGELSPG 1113469 + F+ DK ++ + + + + ++L VG V +S G Sbjct: 363 TSFFLEKFHLTYDKQLNSTFSVAKAVISNEILKGLIQNSFTIIILWVGTRQVLNDSMSLG 422 Query: 1113468 VLIAFLLFLSQFYNPIQQLSNIADSFMQAANGVRHIRELLALPAAEIP-ESDAHDAPPMP 1113292 L+ + + + ++ ++ QA H+ + P + D+++ Sbjct: 423 TLLFINTLAAFLLSSLDRILSMQSDLQQA-----HVASIRFFDVVNYPVQQDSNENLTEL 477 Query: 1113291 HRLRNELDVD-GLGFSYNDDAEGALSDISLSLAPGQSLAVVGRTGAGKTTLAKLLCRYYP 1113115 ++N V+ +G D + DI+L L + ++G +G GK+T AK L + Y Sbjct: 478 DFIQNIKTVNLNIGA---DPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYK 534 Query: 1113114 QEAGRISLDGTPAEKFALHDYRLGIGEVAQEGYLFEGDIAENMRYGRPEAEDHEVAAAAQ 1112935 I L+G ++ R I + + +LF+G I EN+ G + +E+ A Sbjct: 535 VPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEI-FDQNEIENACI 593 Query: 1112934 RVGAHDVVAGLEGGYRHRVEAGGRNLSAGQRQLIALARTELTDPGIFVLDEATSSMDAQA 1112755 H+ + L+ Y +++ G NLS GQ+Q +ALAR L P + +LDE+ S++D Sbjct: 594 MSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDN 653 Query: 1112754 ESAVLDHVLTADPGRCSII-IAHHLTTAERCDRVAVLDNGRIVE 1112626 + + + D C II I H+ + + ++ V N RI+E Sbjct: 654 TKLIYETLHRMD---CLIILITHNDPSNFKYNKKLVFRNNRIIE 694 Score = 97.8 bits (242), Expect = 2e-18 Identities = 61/205 (29%), Positives = 107/205 (52%) Frame = -2 Query: 135416 ADTDRETLKNLNLHIAPGQTLAIVGATGSGKTTLASLVPRLQDVTGGSVRIDGTDIRDLP 135237 AD R ++++NL + + I+G +G+GK+T A + +L V S+ ++G DI Sbjct: 492 ADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYD 551 Query: 135236 VNEVRNLVSVSFEDPILFSTSVAENVSMGAPGVDDAAIWQALEITAAKDFVERLPEGLDT 135057 +R + E+P LF ++ EN+ MG D I A ++ +F+ L + Sbjct: 552 HLSIRKRIVYIDENPFLFKGTIKENLCMGEI-FDQNEIENACIMSQCHEFICNLDKQYSY 610 Query: 135056 QVGEQGLSLSGGQRQRLALARAVIGAPRILVLDDPLSAVDVDTEDRVQRSLREILPDSTT 134877 ++ E G +LS GQ+QRLALARA++ P++L+LD+ LS +D D + +L + D Sbjct: 611 KLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM--DCLI 668 Query: 134876 LIIAHRPSTSALADAVAVLDEGRIV 134802 ++I H ++ + V RI+ Sbjct: 669 ILITHNDPSNFKYNKKLVFRNNRII 693 Score = 84.3 bits (207), Expect = 3e-14 Identities = 110/562 (19%), Positives = 228/562 (40%), Gaps = 10/562 (1%) Frame = -1 Query: 134568 LLVIVVLTALFLV----IGPIFIADALDNGVPKAVDGDPGPLIRXXXXXXXXXXXXXXXX 134401 ++ +++LT+LF+V G +I +D +P+++ LI Sbjct: 167 IVFVILLTSLFVVGLAVAGSFYIKFLVDLIIPRSLRES---LITITLIFISMVLIRCIFD 223 Query: 134400 XXSTRLVGITAQKVVYSLRERLFTHIQRLDLGYHERSTSGRLVSRQTSDMESVQQFLTYS 134221 + L+ + KV + F + +L + + E G ++SR +D ++ F + + Sbjct: 224 FVRSYLIIKLSYKVDKEMSNVYFNKVTKLPINFFENREDGEVISR-FNDGIYIKDFFSAN 282 Query: 134220 LFDTALALFEMTFIAVTL-----IVLDVPLAVVVFLGFIPLFFITKSAHTSQRSAYRRTR 134056 + + + + V L I+ + ++ L + + F +Q+ + + Sbjct: 283 FVTAIIDIILILGLGVILYRTNNILFLTIILPILLLSCLAILFFDHLKKKNQKLMEDKAK 342 Query: 134055 TSIAKVIVHFVETMGGIRAVQAYRRQPDRRGTLKDEDTQYRDANTDALRGVAWFAGWTRL 133876 ++ ++++F++ M + ++ ++ D+ + A+ G L Sbjct: 343 ST--SLLINFLKNMTTVYSLNKTSFFLEKFHLTYDKQLNSTFSVAKAVISNEILKG---L 397 Query: 133875 VGNVTQTVIIIVGAWLVIEGWTQIGVLAAFILYLRRFY-GPLDELVQSFNLYQSASAALE 133699 + N +I+ VG V+ +G L FI L F LD ++ + Q A A Sbjct: 398 IQNSFTIIILWVGTRQVLNDSMSLGTLL-FINTLAAFLLSSLDRILSMQSDLQQAHVASI 456 Query: 133698 KMAAVLDTDPEVVAPTSPKSLPAHRSDQTSGTTSATEDLPAKPSGRSIDLNHVRFSYGDG 133519 + V++ + D T K +I + +R+ D Sbjct: 457 RFFDVVNYPVQ--------------QDSNENLTELDFIQNIKTVNLNIGADPMRYIVEDI 502 Query: 133518 PDVLPRFDLRIPAGQIVALVGATGAGKSTLVKLVTRFYDPSEGRITIDEVDLRDLDDAEL 133339 +L R D V ++G +G GKST K +++ Y + I ++ +D+ D + Sbjct: 503 NLILDRKDK-------VLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSI 555 Query: 133338 RQSVVMVTQESFLFTGTIADNIRIGNPXXXXXXXXXXXXXXXXDPYIRRLPAGYETDVKK 133159 R+ +V + + FLF GTI +N+ +G +I L Y + + Sbjct: 556 RKRIVYIDENPFLFKGTIKENLCMGE-IFDQNEIENACIMSQCHEFICNLDKQYSYKLSE 614 Query: 133158 RGGRLSSGQRQLVSFARVFLADPDIVVLDEATAHLDIPSERLVQKALATVLEGRTAIIIA 132979 G LS+GQ+Q ++ AR L P +++LDE+ +++D + +L+ + L + I+I Sbjct: 615 NGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM--DCLIILIT 672 Query: 132978 HRLSTVEIADRVLVMDSGRIIE 132913 H + ++ LV + RIIE Sbjct: 673 HNDPSNFKYNKKLVFRNNRIIE 694 Score = 71.2 bits (173), Expect = 2e-10 Identities = 110/555 (19%), Positives = 218/555 (39%), Gaps = 17/555 (3%) Frame = -1 Query: 1116108 ILAWSVVTIALVTAGP--------LLTRRGVNDAVDGHTAGLAWLVIGLVLIAAI-DFVG 1115956 IL S+ + L AG L+ R + +++ + + I +VLI I DFV Sbjct: 171 ILLTSLFVVGLAVAGSFYIKFLVDLIIPRSLRESL----ITITLIFISMVLIRCIFDFVR 226 Query: 1115955 NYYRRNLAGRLSLWVQHELRAGAFGSIQRLDGHAQDSMRVGQVVSRTNSDLEQVRSMLQM 1115776 +Y L +LS V E+ F + +L + ++ G+V+SR N + ++ Sbjct: 227 SY----LIIKLSYKVDKEMSNVYFNKVTKLPINFFENREDGEVISRFNDGI-YIKDFFSA 281 Query: 1115775 IPVPVSVVTYFVSGTVVMVY-------LSPALTVVSLTAMALLGLTAWRARKRVFATSAQ 1115617 V + + G V++Y L+ L ++ L+ +A+L + + + + Sbjct: 282 NFVTAIIDIILILGLGVILYRTNNILFLTIILPILLLSCLAILFFDHLKKKNQ------K 335 Query: 1115616 AAQEVGELTERIGQTIDGVRVVKGFSQQNRELGWLERAARGVFGRRMQTARAQAAPGATM 1115437 ++ + T + + + V ++ + L A+A + Sbjct: 336 LMEDKAKSTSLLINFLKNMTTVYSLNKTSFFLEKFHLTYDKQLNSTFSVAKAVISNEILK 395 Query: 1115436 LALPVLGQFAVLGYGGWLVHDGGLDIGTFVAFVTFLTMLTGPTRVFASFLVIAQRTRASA 1115257 + +L G V + + +GT + T L S Q+ ++ Sbjct: 396 GLIQNSFTIIILWVGTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHVAS 455 Query: 1115256 ERIFEVIDSRPEIHDGANSMP-DKLTHLRLENVSFGYTADRPVLNGLDLHISAGETVAII 1115080 R F+V++ + N D + +++ N++ G R ++ ++L + + V II Sbjct: 456 IRFFDVVNYPVQQDSNENLTELDFIQNIKTVNLNIGADPMRYIVEDINLILDRKDKVLII 515 Query: 1115079 GPSGSGKSTISLLLPRFYDPTAGTIRVGTDNGELDLNDVRIEDLRRHVGTVFEDPFLFAS 1114900 G SG+GKST + L + Y +I + NG LD+N +R+ + + E+PFLF Sbjct: 516 GESGTGKSTFAKSLSKLYKVPDKSIYL---NG-LDINRYDHLSIRKRIVYIDENPFLFKG 571 Query: 1114899 SVEDNIAYGHHDXXXXXXXXXXXXXXADEFIRALPAGYDTILAERATDLSGGXXXXXXXX 1114720 ++++N+ G EFI L Y L+E ++LS G Sbjct: 572 TIKENLCMG-EIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALA 630 Query: 1114719 XXXXXXXXXLVIDDSTSAVDATTESGILQVLDNQRSAEHITVLIARRRATLSIADRIVVM 1114540 L++D+S S +D I + L + + +LI + ++ +V Sbjct: 631 RAILHQPQVLILDESLSNIDPDNTKLIYETLHRM---DCLIILITHNDPSNFKYNKKLVF 687 Query: 1114539 DEGRVVDAGTSAELE 1114495 R++++ S E Sbjct: 688 RNNRIIESSYSENKE 702 Score = 65.1 bits (157), Expect = 2e-08 Identities = 48/181 (26%), Positives = 96/181 (53%), Gaps = 5/181 (2%) Frame = -1 Query: 498255 NISVGYDATD-VLHGVSITAQPGELTVILGANGSGKTTLFKTISGLLRTRSGTIEYNGHP 498079 N+++G D ++ +++ + +I+G +G+GK+T K++S L + +I NG Sbjct: 487 NLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLD 546 Query: 498078 IQRTRPNTIVKRGIAHCPEGRHLFGKMSVEKNLRLGTYPHRDRTRTEEILNEVLELFPIL 497899 I R +I KR I + E LF K ++++NL +G ++ I+++ E L Sbjct: 547 INRYDHLSIRKR-IVYIDENPFLF-KGTIKENLCMGEIFDQNEIENACIMSQCHEFICNL 604 Query: 497898 KE----KSAQPAGSLSGGQQQMVAIGRALMSDPSLLILDEPSMGLAPLVVEQVLESIAQI 497731 + K ++ +LS GQ+Q +A+ RA++ P +LILDE + P + + E++ ++ Sbjct: 605 DKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM 664 Query: 497730 N 497728 + Sbjct: 665 D 665 Score = 65.1 bits (157), Expect = 2e-08 Identities = 53/211 (25%), Positives = 106/211 (50%), Gaps = 4/211 (1%) Frame = -3 Query: 1014610 HALKHINLNIKEREVVVVIGPSGSGKSTLCRTINRLETITSGSITIDGKELPAEGAALAH 1014431 + ++ INL + ++ V++IG SG+GKST +++++L + SI ++G ++ H Sbjct: 497 YIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDI----NRYDH 552 Query: 1014430 LRSDVGMVFQAFNLFAHK-TILENVTLGPI-KVRKLSKXXXXXXXXXXXERVG--VAHQA 1014263 L +V+ N F K TI EN+ +G I ++ + +++ Sbjct: 553 LSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKL 612 Query: 1014262 DKYPAQLSGGQQQRVAIARSLAMKPKVMLFDEPTSALDPEMINEVLDVMVGLAEEGMTMV 1014083 + + LS GQ+QR+A+AR++ +P+V++ DE S +DP+ + + L ++ Sbjct: 613 SENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYET---LHRMDCLII 669 Query: 1014082 VVTHEMGFARKAAHRVVFMADGEIVEVAEPE 1013990 ++TH K ++VF + I+E + E Sbjct: 670 LITHNDPSNFKYNKKLVF-RNNRIIESSYSE 699 Score = 63.5 bits (153), Expect = 5e-08 Identities = 50/177 (28%), Positives = 93/177 (52%), Gaps = 10/177 (5%) Frame = -1 Query: 3528 VDSVNLQVPAGETFGVLGTNGAGKTTTMEMIAGLRKPDDGSVRILGLDPFT-DRSEVRQV 3352 V+ +NL + + ++G +G GK+T + ++ L K D S+ + GLD D +R+ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 3351 LGVQLQHANLHDALTARELVDLYRSFYPDPLD-------AHQALAMVELQE--KARTRFS 3199 + ++ L T +E + + F + ++ H+ + ++ Q K S Sbjct: 559 IVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGS 617 Query: 3198 NLSGGQMQRLSIALALVGQPQVVILDELTTGLDPVARRRVWSTIEALQDQTVILVSH 3028 NLS GQ QRL++A A++ QPQV+ILDE + +DP + ++ T+ + D +IL++H Sbjct: 618 NLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM-DCLIILITH 673 Score = 60.5 bits (145), Expect = 4e-07 Identities = 46/175 (26%), Positives = 88/175 (50%), Gaps = 19/175 (10%) Frame = +1 Query: 796756 VDLAIDKGSRVVILGYNGAGKTTLLRLLAGLDE-PDSGEVVPGFGL---------KLGYY 796905 ++L +D+ +V+I+G +G GK+T + L+ L + PD + G + K Y Sbjct: 502 INLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVY 561 Query: 796906 AQEHETLDLERSVLENMKR----NSPHLDDTAVRNVLGSFLFSGDDVH-----KPSKVLS 797058 E+ L + ++ EN+ + +++ + + F+ + D + + LS Sbjct: 562 IDENPFL-FKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLS 620 Query: 797059 GGEKTRLALATLVVSSANVLLLDEPTNNLDPASREEILSAIRRYEGAIILVTHDE 797223 G+K RLALA ++ VL+LDE +N+DP + + I + R + IIL+TH++ Sbjct: 621 TGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCLIILITHND 675 Score = 60.1 bits (144), Expect = 6e-07 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 9/200 (4%) Frame = +2 Query: 124715 VKNDEAERVLEITGLQ--KHFPLLKGAVFKRQIGTVRAVDGIDLEIREGQTLGLVGESGC 124888 V+ D E + E+ +Q K L GA R I V+ I+L + + ++GESG Sbjct: 466 VQQDSNENLTELDFIQNIKTVNLNIGADPMRYI-----VEDINLILDRKDKVLIIGESGT 520 Query: 124889 GKSTSIGEVLEMVAPQKGKIVINGVDVSELSKRDRLAMRKDVQVVFQDPMAAIDPRLPVG 125068 GKST + ++ I +NG+D++ + D L++RK + + ++P Sbjct: 521 GKSTFAKSLSKLYKVPDKSIYLNGLDIN---RYDHLSIRKRIVYIDENPFL-------FK 570 Query: 125069 EVIAEPLTVHKVPAKQRTDTVAEMLELVGLDANMADRYPHEFSG-------GQRQRIGIA 125227 I E L + ++ + + M + N+ +Y ++ S GQ+QR+ +A Sbjct: 571 GTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALA 630 Query: 125228 RALVTNPKLLVLDEPVSALD 125287 RA++ P++L+LDE +S +D Sbjct: 631 RAILHQPQVLILDESLSNID 650 Score = 59.7 bits (143), Expect = 7e-07 Identities = 50/222 (22%), Positives = 107/222 (48%), Gaps = 13/222 (5%) Frame = +2 Query: 580985 NLESMSVGWEAGP---VVEDVDLRARTGQWTVLHGDSGTGKSTTLSVLLRFLDPWTGSYR 581155 N++++++ A P +VED++L ++ G+SGTGKST L + Y+ Sbjct: 482 NIKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKL-------YK 534 Query: 581156 AEDEAG--RETDVLSLAPSDLAGRIAWCPQEAHIFRSTVRGNLAIARSGTPTTEEMCEAL 581329 D++ D+ + RI + + +F+ T++ NL + E + Sbjct: 535 VPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIM 594 Query: 581330 TRAGLGEWADAAGLDLWVGDHGADISGGQRQRLAVARTILSGAEVIVLDEPTAHLDDEMA 581509 ++ + ++G+++S GQ+QRLA+AR IL +V++LDE +++D + Sbjct: 595 SQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNT 654 Query: 581510 HRLVADLRMSLDSHAVVMVTH--------DRSLIAEGDRLVE 581611 +L+ + +D ++++TH ++ L+ +R++E Sbjct: 655 -KLIYETLHRMDC-LIILITHNDPSNFKYNKKLVFRNNRIIE 694 Score = 59.3 bits (142), Expect = 9e-07 Identities = 59/215 (27%), Positives = 100/215 (46%), Gaps = 8/215 (3%) Frame = -2 Query: 1175354 LDDISVDFEAGRFSAIMGPSGSGKSTFMHVLAGLDRVDSGSITMGGQDITGLNDKELTQ- 1175178 ++DI++ + I+G SG+GKSTF L+ L +V SI + G DI + + + Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 1175177 -LRRDRVGFIFQAF---NLVPTLSAEQN-IELPVSLARQRIDPEWKAEVVDRLE--LGDR 1175019 + D F+F+ NL +QN IE +++ E + L+ + Sbjct: 559 IVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCH-------EFICNLDKQYSYK 611 Query: 1175018 LKHRPHELSGGQQQRVAVARALLTRPDVIFADEPTGNLDSQAGAEVLALLHGATTRYGQT 1174839 L LS GQ+QR+A+ARA+L +P V+ DE N+D + LH R Sbjct: 612 LSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLH----RMDCL 667 Query: 1174838 IILVTHDPVAASHADRVVLLKDGRAGGEVHQPTKE 1174734 IIL+TH+ + ++ ++ ++ R + KE Sbjct: 668 IILITHNDPSNFKYNKKLVFRNNRIIESSYSENKE 702 Score = 58.2 bits (139), Expect = 2e-06 Identities = 49/194 (25%), Positives = 93/194 (47%), Gaps = 4/194 (2%) Frame = -3 Query: 191476 VLKDLNFTVAPGERVTLIGPSGSGKTTILRLVMTLEELTGGFIFVDGKPLTHTEKNGKRV 191297 +++D+N + ++V +IG SG+GK+T + + L ++ I+++G + + R Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIR- 556 Query: 191296 ELPSKTTRAMTTRIGMVFQQFNLFPNMTVLENIVEAPVHVLGKPKAEAVK----EAKSLL 191129 RI + + LF T+ EN+ + + + + E L Sbjct: 557 -----------KRIVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNL 604 Query: 191128 EKVGLGEKADEHPTRLSGGQQQRVAIARALAMSPEILLLDEVTSALDPELVGDVLGVLRD 190949 +K K E+ + LS GQ+QR+A+ARA+ P++L+LDE S +DP D ++ + Sbjct: 605 DKQ-YSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDP----DNTKLIYE 659 Query: 190948 IAETTDITMLLVTH 190907 D ++L+TH Sbjct: 660 TLHRMDCLIILITH 673 Score = 52.8 bits (125), Expect = 9e-05 Identities = 49/206 (23%), Positives = 97/206 (47%), Gaps = 7/206 (3%) Frame = +1 Query: 1125346 RELVSGVSFSLMSGEVVALVGPNGAGKSTMLSLLSGDVAPTKGTVEIAGTDLRSWKSGPL 1125525 R +V ++ L + V ++G +G GKST LS ++ + G D+ + + Sbjct: 496 RYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSI 555 Query: 1125526 ARKRSVMLQHNSSNFSFSVKEAVHMGRLPWAVDVHEDEN--LVAEAIE-----DSDLSGF 1125684 RKR V + N F ++KE + MG + D +E EN ++++ E D S Sbjct: 556 -RKRIVYIDENPFLFKGTIKENLCMGEI---FDQNEIENACIMSQCHEFICNLDKQYSYK 611 Query: 1125685 ETRDITTLSGGETARVSYARTTAQTTPIIFLDEPTAALDLKHQETLLRSVRRMRDNGSAI 1125864 + + + LS G+ R++ AR ++ LDE + +D + + + ++ RM I Sbjct: 612 LSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM---DCLI 668 Query: 1125865 AVVLHDLNLALRYADRVLVFGDGKLV 1125942 ++ H+ +Y ++ LVF + +++ Sbjct: 669 ILITHNDPSNFKY-NKKLVFRNNRII 693 Score = 52.4 bits (124), Expect = 1e-04 Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 7/186 (3%) Frame = -2 Query: 1697342 NIEVIYDEVILVLRGMSLGVEEGKIVALLGSNGAGKSTTLKAVSGLLPSEQGEIASGRIA 1697163 N+ + D + ++ ++L ++ V ++G +G GKST K++S L ++ I Sbjct: 487 NLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLY-----KVPDKSIY 541 Query: 1697162 FAGEDITRLDPADRVRRGLSLCMEGRHIFGHLTVAENLQAGGY-------TASAKDDRLD 1697004 G DI R D +R+ + E +F T+ ENL G A + Sbjct: 542 LNGLDINRYDHLS-IRKRIVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHE 599 Query: 1697003 FVYEFFPKLADMRGRTAGFLSGGEQQMLAIGRALMANPKLLMLDEPSLGLAPLLVEEIFS 1696824 F+ + + LS G++Q LA+ RA++ P++L+LDE + P + I+ Sbjct: 600 FICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYE 659 Query: 1696823 TIARLN 1696806 T+ R++ Sbjct: 660 TLHRMD 665 Score = 50.4 bits (119), Expect = 4e-04 Identities = 51/228 (22%), Positives = 97/228 (42%), Gaps = 19/228 (8%) Frame = -1 Query: 1659819 EDISFSVASGQRLGIVGESGSGKSTLLNILSGLDRPSSGQVRVGDIRVXXXXXXXXXXXX 1659640 EDI+ + ++ I+GESG+GKST LS L + + + + + Sbjct: 500 EDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDI------------ 547 Query: 1659639 ENLQIVFQDPFASLDPRMRIEDIVSEPLVARGLGREERLARVEEMLQAVDLDTKVMRRYP 1659460 + + L R RI I P + +G +E + E+ +++ + Sbjct: 548 --------NRYDHLSIRKRIVYIDENPFLFKGTIKENLC--MGEIFDQNEIENACIMSQC 597 Query: 1659459 HQF-------------------SGGQRQRISIARALVTRPQILVADEPVSALDVSVRAQV 1659337 H+F S GQ+QR+++ARA++ +PQ+L+ DE +S +D Sbjct: 598 HEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPD---NT 654 Query: 1659336 LNLFTDLVDDYALTLLFVSHDLGVVKHLCSDVIVMKDGHIVESGSTED 1659193 ++ L L +L +D K+ + +V ++ I+ES +E+ Sbjct: 655 KLIYETLHRMDCLIILITHNDPSNFKY--NKKLVFRNNRIIESSYSEN 700 Score = 48.1 bits (113), Expect = 0.002 Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 11/183 (6%) Frame = +1 Query: 698707 HAVSDLSFSVEQGEIFGLLGPNGAGKTTTLEMLAGIRRASSGQVAIMGHDPYRDRKFTVE 698886 + V D++ +++ + ++G +G GK+T + L+ + + + + G D R ++ Sbjct: 497 YIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIR 556 Query: 698887 HVALQQQESSVFQYLTVSELVELHASFYSDPRKPDDAI------EFAGLLDHR-----GQ 699033 + E+ T+ E + + F D + ++A EF LD + + Sbjct: 557 KRIVYIDENPFLFKGTIKENLCMGEIF--DQNEIENACIMSQCHEFICNLDKQYSYKLSE 614 Query: 699034 RFSKLSGGQKRRLAFSLAVVGNTDILILDEPAAGLDPAARTELQVSIRRLQSLGKTIVYT 699213 S LS GQK+RLA + A++ +LILDE + +DP + ++ R+ L I+ Sbjct: 615 NGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCL---IILI 671 Query: 699214 THH 699222 TH+ Sbjct: 672 THN 674 Score = 47.8 bits (112), Expect = 0.003 Identities = 31/91 (34%), Positives = 53/91 (58%) Frame = -3 Query: 1245721 LSGGQRQRIMIAQALACQPKLLIADEPTTALDVTVQAEILKLMRELKSKLDAGIILITHD 1245542 LS GQ+QR+ +A+A+ QP++LI DE + +D + KL+ E ++D IILITH+ Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNID----PDNTKLIYETLHRMDCLIILITHN 674 Query: 1245541 MGVVADMADRMIVMKAGRVVESGNAEEIFYN 1245449 ++ +V + R++ES +E Y+ Sbjct: 675 -DPSNFKYNKKLVFRNNRIIESSYSENKEYS 704 Score = 47.4 bits (111), Expect = 0.004 Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 3/172 (1%) Frame = -2 Query: 498989 VKNVDLDVQEGQITAVIGPNGAGKSTLFNLIHGFYRPTAGTVSFNGRDITHSSPHNSVNG 498810 V++++L + +IG +G GKST + Y+ ++ NG DI H S+ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYD-HLSIRK 557 Query: 498809 GIARTFQTTHLFDDSTLLENVLAGRIVRSKSNVFDAIFHTPRHRRESALNQDKALEALDF 498630 I + LF T+ EN+ G I ++ + +A + H E N DK Sbjct: 558 RIVYIDENPFLF-KGTIKENLCMGEIF-DQNEIENACIMSQCH--EFICNLDK------- 606 Query: 498629 CGVAEFRHDLA---SNVPQEVQKRTAVAMALATEPELILLDEPAGGIPEEET 498483 ++ + L+ SN+ ++R A+A A+ +P++++LDE I + T Sbjct: 607 ----QYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNT 654 Score = 46.6 bits (109), Expect = 0.006 Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 15/185 (8%) Frame = -3 Query: 788173 IRGLHYSYGA---HHVVDGIDLDATTGSILGVLGPNGAGKSTTI-SLAVGTRPPDAGQIE 788006 I+ ++ + GA ++V+ I+L + ++G +G GKST SL+ + PD I Sbjct: 483 IKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKS-IY 541 Query: 788005 IFGLDPYRRHDQTSLLAGVMLQDGGLPMSAKPLQVLRHLASLYPNPLTIDELAEPLGIHE 787826 + GLD R+D S+ ++ D + ++ + ++ I+ HE Sbjct: 542 LNGLD-INRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQN-EIENACIMSQCHE 599 Query: 787825 FA-----------SRTIRRLSGGQKQRVALAAALIGRPRLVFLDEPCAGLDPQARAVVHD 787679 F S LS GQKQR+ALA A++ +P+++ LDE + +DP ++++ Sbjct: 600 FICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYE 659 Query: 787678 FIREL 787664 + + Sbjct: 660 TLHRM 664 Score = 43.9 bits (102), Expect = 0.041 Identities = 36/165 (21%), Positives = 74/165 (44%), Gaps = 1/165 (0%) Frame = -1 Query: 1293660 NLDLAYDH-RQVITDLNVEIAPGKFTVIVGPNACGKSTLLRALARLMTPAQGTVLLDGGN 1293484 NL++ D R ++ D+N+ + +I+G + GKST ++L++L ++ L+G + Sbjct: 487 NLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLD 546 Query: 1293483 IAKLKTKQIAKRLGLLPQTSIAPDGITVAELVARGRHPHQSFLKQWTDQDETAVLSALRA 1293304 I + I KR+ + + G T+ E + G Q+ ++ + Sbjct: 547 INRYDHLSIRKRIVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLD 605 Query: 1293303 TNTEDLSGRQVDELSGGQRQRVWVAMVLAQETPLMLLDEPTTFLD 1293169 LS GQ+QR+ +A + + +++LDE + +D Sbjct: 606 KQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNID 650 Score = 42.4 bits (98), Expect = 0.12 Identities = 24/61 (39%), Positives = 38/61 (62%) Frame = +3 Query: 627795 STLSGGERFRVALAKSLLQNPAPQLLILDEPGNNLDLSSLTALVTALDGFGGAMIVITHD 627974 S LS G++ R+ALA+++L P Q+LILDE +N+D + + L +I+ITH+ Sbjct: 617 SNLSTGQKQRLALARAILHQP--QVLILDESLSNIDPDNTKLIYETLHRMDCLIILITHN 674 Query: 627975 D 627977 D Sbjct: 675 D 675 >ref|NP_817615.1|gp26 Length = 1008 Score = 101 bits (252), Expect = 2e-19 Identities = 51/102 (50%), Positives = 65/102 (63%) Frame = -1 Query: 55971 LPGRALSALGNIGSKLYNSGKAMIDGFKDGIXXXXXXXXXXVKDGLSRIRNFFPFSPAKE 55792 LPG SALG++GS L SGKA+I GF GI + + +RN FPFSPAKE Sbjct: 702 LPGMVKSALGDLGSFLVESGKALIAGFARGIEAGIDLAVGAAQRVVGAVRNLFPFSPAKE 761 Query: 55791 GPFSGKGWTWYSGQSMSEGLADGMASGTSDVVRQSEALMKAA 55666 GPFSG+GW YSGQS+ E ADGM S +V+ ++ +M+AA Sbjct: 762 GPFSGRGWVSYSGQSVGEAFADGMKSTQGSIVQTAKEIMQAA 803 >ref|NP_861955.1|gp52 topoisomerase II, medium subunit Length = 441 Score = 100 bits (248), Expect = 5e-19 Identities = 85/294 (28%), Positives = 136/294 (46%), Gaps = 3/294 (1%) Frame = +3 Query: 1440351 DVSSEMESSFLEYAVSVIHSRALPDARDGLKPVQRRIVYQMGDMGLRPERGHVKSSRIVG 1440530 ++ S +++ L YA+ + +RA+P+ DG KPVQR +V++ D+ + K + I G Sbjct: 7 NLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVHRALDLARGNKEKFHKLASIAG 66 Query: 1440531 DVMGKLHPHGDTAIYDALVRLSQSFIMRVPLVDGHGNFGSLD-DGPAAPRYTEARLTSAS 1440707 V + HG+++ DA ++ ++ PL+DG GNFGS AA RY AR++ Sbjct: 67 GVADLGYHHGESSAQDAGALMANTWNNNYPLLDGQGNFGSRTVQKAAASRYIFARVS--- 123 Query: 1440708 MQMIAGLDEDVVDFVGNYDNTLTQPEVLPSAFPNLLINGTSGIAVGMATNMAPHNPGEVI 1440887 + + +D + D P+ P +L+NG SGIA G ATN+ PH+ V Sbjct: 124 -KNFYNVYKDTEYAPAHEDKEHIPPKFYLPIIPTVLLNGVSGIATGYATNILPHSFKSVK 182 Query: 1440888 AACCHLI--RNPEAGLAELMRFIPGPDLPTGGRIIGLDGVREAYETGRGTFRTRATVSIE 1441061 A + +N E F G + +DG E + T + T RT+ Sbjct: 183 KAVLQALQGKNVTKPKVEFPEF--------RGEVHEVDGRYEIHGTYKFTSRTQ------ 228 Query: 1441062 NINARRKGIVVTELPYLVGPEKVVSKVKDAVGAKKLTGIASIDDYSDRKNGMRL 1441223 + +TE+PY E VSKV D + K L I+ DD + G ++ Sbjct: 229 --------MQITEIPYKFDRETYVSKVLDPLEDKGL--ISWEDDCGEHGFGFKV 272 >ref|NP_039708.1|predicted 66.2Kd protein Length = 595 Score = 99.4 bits (246), Expect = 8e-19 Identities = 135/563 (23%), Positives = 236/563 (41%), Gaps = 30/563 (5%) Frame = +1 Query: 754162 GAPDEAWVVDLAEAGEADVSKLSSALRS-KTLILHSSKTQIKAW-RSLGLDVDDV---AG 754326 G DEAWVV + E G+ + + A+ + K ++L ++ ++ + G++++ + Sbjct: 62 GTQDEAWVVPV-ELGDVFIEDVRIAIGALKRMVLQNASFDLQVLDQCFGIEMEGLWPRVL 120 Query: 754327 DTALAAYLLVPDQRSYELQQIA-----LERAGIELSDAESDSGQLALDLESDQTAQTHGH 754491 DT + A L+ D R +E L I AE+ +A +T + Sbjct: 121 DTQILAKLV--DPRPFEAGGFGHSLEELIAKFISEDQAENVKKLMAKLAAEHKTTKAKIW 178 Query: 754492 RAAALLEVHDILAAKIDEANMSQVYRDIELPLVPVLAR---------------MELAGIA 754626 L +L A +D ++V + + PLVP ++R ++ G Sbjct: 179 STIDLFHPEYLLYAGMDTIFTARVCKSLT-PLVPDVSRSLVPYEHKISEICSYIDRQGFL 237 Query: 754627 VDEAGLSGLIDEFTKQANASAELAYEAIGHEVNLGSPKQLQTVLFDELDMPKTKRTKTGY 754806 +D L +++ +A+ G E + S + L L +E+ + T RT+TG Sbjct: 238 LDVEYSRSLAEKWLADQEVWEAIAFTEYGVE-KVNSTEDLAEGL-EEMGVKITGRTETGK 295 Query: 754807 TTDAEALAELFIKTEHPFLQHLLAYRDSTKLKQT-VVGLLKTVAEDGRIHTTYQQTVAAT 754983 AL + ++ + + K ++T V + T + R HT A T Sbjct: 296 RQVNAALLDKLVEDGNELAAIAQEAKKLGKWRKTWVQKFIDTRDSEDRCHTFINPLQART 355 Query: 754984 GRLSSLDPNLQNIPVRTESGRRIREIFIADPHVDDARLLTADYSQIEMRIMAHLSGDAAL 755163 R+S Q +P S +R FIA+P + + DY E+R++A LSGD + Sbjct: 356 SRMSITGIPAQTLP---SSDWIVRRCFIAEP---GDVMASVDYQAQELRVLAALSGDRNM 409 Query: 755164 IQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSKVKAMSYGLVYGLSAYGLSRQLAIGVDE 755343 I+AF++G DLH + R K ++ VYG A L+ + I + Sbjct: 410 IEAFENGADLHQMTA---------DAAQVPRKVGKTANFQKVYGGGAKALAEAVGISIPV 460 Query: 755344 AKNLMEQYFERFGAVKDYLDEIVEQARANGYTETIMGRRRYLPALHSDRRQLRDMAERAA 755523 AK + E + + V+ ++ +A NGY MGRR LP + S R +A Sbjct: 461 AKRVHEAFSATYPGVERLSKKLAMEAGRNGYIVNAMGRR--LP-VDSSRTY-------SA 510 Query: 755524 LNAPIQGSAADIMKIAMLKVSDRLGDHKSTVLLQVHDEIIVDVHPEEID----SVTQIVT 755691 LN IQ S+ D+ A++++ + + + L +HDEI+ + E + + ++ Sbjct: 511 LNYMIQSSSRDVTCRALIRLHE--AGYTPYLRLPIHDEIVASLPASEAERAAAHIGHLMQ 568 Query: 755692 EEMGSAFELDVPLDVNVGTGTSW 755760 E+MG V D VG SW Sbjct: 569 EQMGPVL---VGTDPEVGK-RSW 587 >ref|NP_049875.1|gp52 topoisomerase II, medium subunit Length = 442 Score = 97.8 bits (242), Expect = 2e-18 Identities = 85/293 (29%), Positives = 132/293 (45%), Gaps = 12/293 (4%) Frame = +3 Query: 1440351 DVSSEMESSFLEYAVSVIHSRALPDARDGLKPVQRRIVYQMGDMGLRPERGHVKSSRIVG 1440530 D+ S +++ L YA+ + +RA+P+ DG KPVQR ++ + D+ + K + I G Sbjct: 7 DLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAG 66 Query: 1440531 DVMGKLHPHGDTAIYDALVRLSQSFIMRVPLVDGHGNFGSLD-DGPAAPRYTEARLTSAS 1440707 V + HG+ + DA ++ ++ PL+DG GNFGS AA RY AR++ Sbjct: 67 GVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSK-- 124 Query: 1440708 MQMIAGLDEDVVDFVGNYDNTLTQP-----EVLPSAF-----PNLLINGTSGIAVGMATN 1440857 +F Y +T P E +P AF P +L+NG SGIA G AT Sbjct: 125 ------------NFYNVYKDTEYAPVHQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATY 172 Query: 1440858 MAPHNPGEVIAACCHLIRNPEAGLAELMRFIPGPDLPT-GGRIIGLDGVREAYETGRGTF 1441034 + PH+ V A ++ + P + P G ++ +DG E T + T Sbjct: 173 ILPHSVSSVKKAVLQALQGKKVTK-------PKVEFPEFRGEVVEIDGQYEIRGTYKFTS 225 Query: 1441035 RTRATVSIENINARRKGIVVTELPYLVGPEKVVSKVKDAVGAKKLTGIASIDD 1441193 RT+ + +TE+PY E VSK+ D + K G + DD Sbjct: 226 RTQ--------------MHITEIPYKYDRETYVSKILDPLENK---GFITWDD 261 >ref|NP_852599.1|hypothetical protein Length = 1174 Score = 96.3 bits (238), Expect = 7e-18 Identities = 115/568 (20%), Positives = 204/568 (35%), Gaps = 13/568 (2%) Frame = -1 Query: 57603 SANAQLKGLGYSAKDVENISGQVATALEGGMMTLGEGTRVAAGGLAAGVEQGKELEKYIG 57424 +A AQ +GL YS + +N+S +GG T LA G + G YI Sbjct: 393 AAGAQ-EGLNYSDELFDNLSEYAPLFKQGGFSAQEMFTI-----LANGTKSGSYNLDYI- 445 Query: 57423 LVDAAAIGMNTSVDETAMIFNRVQGSGKVMTEELQMVEQRMPGFSNALQEHIGVASD--- 57253 N V E + RVQ K ++E + + + E G A+D Sbjct: 446 ---------NDLVKEFGI---RVQDGSKGVSEGFGDLSEETQKVWKSFNEGKGTAADVFN 493 Query: 57252 ---DEFKKM---VTAGEVGSDAFLETMDTFAGDMAKEHAKSFDGLVDLAKAYVGQIGEAM 57091 + +KM V A ++G F + + GL D+ +G++ + Sbjct: 494 AVLGDLQKMDDKVKANQIGVALFGVKWEDMGAEAVLSLNNVHGGLGDVT-GRMGEMKKLQ 552 Query: 57090 LGGVFEQSKDSIAEFVDWLSDPGVQAKAAELGKTIGDVFSKVLGVVKNVITWFMGLPAPI 56911 + +Q + ++ E L G K AEL K D+ ++ VK+V+ WF L Sbjct: 553 EESLGQQFQKALRETQAALEPLG--KKFAELAK---DILPPIVDGVKSVMDWFSKLSEAD 607 Query: 56910 QKTXXXXXXXXXXXXXXXXXXGTMASTIGTLITTFGAIAGVIAKIPAPLNILGGLFRMIS 56731 Q T+ +G L T F + ++A + L F + Sbjct: 608 Q---------------------TLLIVMGALSTAFIILTPIVAALAVSFGALNLAFLPV- 645 Query: 56730 PLLGLLKVGLMAVGGAMKALWLTMMANPXXXXXXXXXXXXXXXVWFF----TQTETGKKM 56563 + + V L+ G M ++ N WF + +T + Sbjct: 646 -IATIAAVSLVITGIIM------LIKNWGAITDWLSEKWSEFKDWFGELWDSIVQTCEDA 698 Query: 56562 WSAFMDWLGQAWEWIKXXXXXXXXXXXXXXXXAWNWVKDTSVAIWNGFISWIVGLWNGII 56383 WS+ +D+ AW W + DT+ IW G + W+ I Sbjct: 699 WSSTVDYFSGAWSDFLNMVNEFFEPVGQFFADLWTGISDTASEIWTGITDYFSESWSSFI 758 Query: 56382 GTAKAVFLGIGTAIITAWNWIKTKTSDVWNAIINWIKDTWNKIITTISDAVNKVKNWISD 56203 A ++ +G W I + +W+ + ++TW+ I+T + ++ V + Sbjct: 759 ELADSILSPLGEFFSGLWTGIVETATSIWDQLKTAWQETWDTILTVLDPIISAVSTVLEA 818 Query: 56202 AWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKVQQIKNWITNTWNRVKNTTSNAWSGI 56023 W +I+ W I I + I A + K+ ++ W++ W +K AW Sbjct: 819 GWLLIQAGAQIAWAAISQYIIQPIQEAYDWISAKIGELVTWLSTQWELIKAAAQVAWGLF 878 Query: 56022 KSAVRNGINGAVNFVRRLPGRALSALGN 55939 K + + A ++V+ G +S L + Sbjct: 879 KQYITQPVQEAWDWVKEQIGALVSWLNS 906 >ref|NP_075308.1|gp41 Length = 608 Score = 95.9 bits (237), Expect = 9e-18 Identities = 131/567 (23%), Positives = 245/567 (43%), Gaps = 34/567 (5%) Frame = +1 Query: 754162 GAPDEAWVVDLAEAGEADVSKLSSALRSKTLILHSSKTQIKAW-RSLGLDVDDV---AGD 754329 G P E+WV+ + G + +++ + + ++H++ ++ R+LG+ ++ + D Sbjct: 62 GNPWESWVLPVERGGVFVGAAVTALQKVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVED 121 Query: 754330 TALAAYLLVPDQRSYE-------LQQIALERAGIELSDAESDSGQLALDLESDQTAQTHG 754488 T + ++L+ D R+Y+ L++ L + I+ AE +A + +T + Sbjct: 122 TKIYSHLV--DPRAYKEGGTGHKLEE--LTKFYIDPVTAEEVKASMARLAKKHKTTKD-- 175 Query: 754489 HRAAALLEVHDI---LAAKIDEANMSQVYRDIELPLVP---------------VLARMEL 754614 + AL+++ D L A +D +S++ + PLVP V++ +E Sbjct: 176 -KIWALVDLDDPDYELYAGMDTILVSRLLGKVA-PLVPEPSHKLIPYEHKLAEVMSYVER 233 Query: 754615 AGIAVDEAGLSGLIDEFTKQANASAELAYEAIGHEVNLGSPKQLQTVLFDELDMPKTK-- 754788 G +D L + +++ +A A G + + K L D L+ K Sbjct: 234 TGFLLDVDYSEKLSADMLRKSEHYTAVARYAYGVDSVNSTEK-----LADGLERTGVKIK 288 Query: 754789 -RTKTGYTTDAEALAELFIKTEHPFLQHLLAYRDSTKLKQTVV-GLLKTVAEDGRIHTTY 754962 RT TG L E + + + + + ++T V ++ + R+H Sbjct: 289 GRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSWEKTWVRNFIERRDANDRVHPGI 348 Query: 754963 QQTVAATGRLSSLDPNLQNIPVRTESGRRIREIFIADPHVDDARLLTADYSQIEMRIMAH 755142 A T R+S+ +P+ QN+P +R F+ADP +++ DY E+R++A Sbjct: 349 NPLQARTARMSTNNPSAQNLPA---GDWMVRRCFLADP---GQLMVSVDYQAQELRVLAA 402 Query: 755143 LSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSKVKAMSYGLVYGLSAYGLSRQ 755322 L+ D +IQAFKD DLH G+D R K +++ V+G ++ Q Sbjct: 403 LANDRTMIQAFKDNADLHQITAD---ASGVD------RKVGKMVNFAYVFGSGPSTIAAQ 453 Query: 755323 LAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQARANGYTETIMGRRRYLPALHSDRRQLR 755502 I EAK ++ + + + V + +A GY T GRR LP + DR Sbjct: 454 AGITFPEAKRVIAGFEQSYPEVTALSKSLQREAANLGYVITPTGRR--LP-VDPDRGY-- 508 Query: 755503 DMAERAALNAPIQGSAADIMKIAMLKVSDRLGDHKSTVLLQVHDEIIVDVHPEEIDSVTQ 755682 AALN +Q ++ D+ A+L++ + + L +HDE++ V E ++ + Sbjct: 509 -----AALNYMVQSTSRDVTASAVLRLHE--AGMTPMIRLVIHDEVLASVPEAEAEATAK 561 Query: 755683 IVTEEMGSAFE-LDVPLDVNVGTGTSW 755760 + M F + + D VG G SW Sbjct: 562 EIGRIMEQTFRGVLINTDPEVG-GRSW 587 >ref|NP_463492.1|putative integrase Length = 452 Score = 93.2 bits (230), Expect = 6e-17 Identities = 99/419 (23%), Positives = 182/419 (43%), Gaps = 26/419 (6%) Frame = -2 Query: 1007096 EVAAYVRASMDRKGDRWTVDTQLRKIRALAEAKDWNVVEVYEDNAVSATKKRRAGTRWAE 1006917 + A Y+R S + + +++ Q K+ AL +KDW+V +++ D S + R E Sbjct: 2 KAAIYIRVSTQEQVENYSIQAQTEKLTALCRSKDWDVYDIFIDGGYSGSNMNRPALN--E 59 Query: 1006916 MLEDARAGRFSMVVAVDMDRLLRSTKDLNTLID-----LGLRVVTVDGEIDLSTADGEFR 1006752 ML ++ VV +DRL RS +D TLI+ + V++ +D S+ G Sbjct: 60 ML--SKLHEIDAVVVYRLDRLSRSQRDTITLIEEYFLKNNVEFVSLSETLDTSSPFGRAM 117 Query: 1006751 ATMLAALARFEARRKAERQIRSNERRRAEGIP--TSAWKAFGW-TRDGELI--PEEAEAI 1006587 +L+ A+ E +R + +R G+P T+ + FG+ D +L EEA+ + Sbjct: 118 IGILSVFAQLERETIRDRMVMGKIKRIEAGLPLTTAKGRTFGYDVIDTKLYINEEEAKQL 177 Query: 1006586 QRAFDAFLGEPSLSIRRIREDLNAAGHLTARGSEFSVDAVRYLLANPLYAGYIKHYASGE 1006407 Q +D F E SI +++ L G + ++ L N LY GY+ + + Sbjct: 178 QLIYDIF--EEEQSITFLQKRLKKLGFKVRTYNRYN-----NWLTNDLYCGYVSY---KD 227 Query: 1006406 LYPVQGDTFPPIVGEQTWRAAVAKLEDNVRRSARQGNQPKYLLSTIGLCGKCGATLVSGT 1006227 V+G P I EQ +R V ++ + ++ LL+ + +C KCG V Sbjct: 228 KVHVKGIHEPIISEEQFYR--VQEIFTRMGKNPNMNRDSASLLNNLVVCSKCGLGFV--- 282 Query: 1006226 NSRKQPTYRCGEHFHL----------TRQREPLDAMV------TEAVLTRLSSVDVHDLV 1006095 R++ T G+ +H T + E + E ++ R+++ Sbjct: 283 -HRRKDTMSRGKKYHYRYYSCKTYKHTHELEKCGNKIWRADKLEELIINRVNNYSFASRN 341 Query: 1006094 MPQEDAGPDREELLTERNALVERVKELSPLLRDIHQPVLEITAAINDVKARIDEIDAEL 1005918 + +ED E L +A + K L L + V E+ + +ND+ A+I+ ++++ Sbjct: 342 VDKEDELDSLNEKLKIEHA---KKKRLFDLYINGSYEVSELDSMMNDIDAQINYYESQI 397 Score = 72.0 bits (175), Expect = 1e-10 Identities = 50/147 (34%), Positives = 80/147 (54%), Gaps = 8/147 (5%) Frame = +2 Query: 1044875 YARVSTRDQSTD---RQQTDLLAAGVRRDD-----LYVDHGVSGARASRPEFNRALDALI 1045030 Y RVST++Q + + QT+ L A R D +++D G SG+ +RP N L L Sbjct: 6 YIRVSTQEQVENYSIQAQTEKLTALCRSKDWDVYDIFIDGGYSGSNMNRPALNEMLSKLH 65 Query: 1045031 DGDTLVITTLDRLGRSTQNMLTFAEELRGRGAGLRVLNLGGGDVDTATPIGSMLFTIMAA 1045210 + D +V+ LDRL RS ++ +T EE + + ++L +DT++P G + I++ Sbjct: 66 EIDAVVVYRLDRLSRSQRDTITLIEEYFLKN-NVEFVSL-SETLDTSSPFGRAMIGILSV 123 Query: 1045211 LAQMEHEIKRERITDSIKKRRDAGLDL 1045291 AQ+E E R+R+ KR +AGL L Sbjct: 124 FAQLERETIRDRMVMGKIKRIEAGLPL 150 >ref|NP_818571.1|gp33 Length = 2047 Score = 92.4 bits (228), Expect = 1e-16 Identities = 42/85 (49%), Positives = 57/85 (67%), Gaps = 3/85 (3%) Frame = +3 Query: 884727 GGPAQASTGAQSSEGVWDKVAECESGGDWHINTGNGYYGGLQFSEQTWKAFGGEGMPHK- 884903 G A+ + + WD +A+ ESGG+W INTGNGYYGGLQF++ +W+A GG + Sbjct: 1500 GAVARGTEAGMKAGADWDAIAQKESGGNWAINTGNGYYGGLQFAQSSWEAAGGLAYASRA 1559 Query: 884904 --ASKAEQIDVAQKTLKEQGPGAWP 884972 ASK +QI A++ LK+QGPGAWP Sbjct: 1560 DLASKEQQIAAAEELLKQQGPGAWP 1584 >ref|NP_523322.1|gene 5B protein Length = 372 Score = 92.4 bits (228), Expect = 1e-16 Identities = 81/304 (26%), Positives = 131/304 (43%), Gaps = 22/304 (7%) Frame = +1 Query: 754921 LKTVAEDGRIHTTYQQTVAATGRLSSLDPNLQNIP-VRTESGRRIREIFIADPHVDDAR- 755094 L+ VAEDG+IH + A TGR + PNL IP VR+ G + R F A+ H+D Sbjct: 75 LRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITG 134 Query: 755095 ----LLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSK 755262 D S +E+R +AH + F +GE H + + + R Sbjct: 135 KPWVQAGIDASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQMAAELPTRDN 188 Query: 755263 VKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEI----VEQARAN 755430 K YG +YG + + + G + K L +++ E A+ + I VE ++ Sbjct: 189 AKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWV 248 Query: 755431 GYTETIMGRRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIAMLKVSDRL----- 755595 + + +RR++ L D R++ + AALN +Q + A I K+ ++K + L Sbjct: 249 AGEQQVKWKRRWIKGL--DGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLVEKGL 306 Query: 755596 ---GDHKSTVLLQVHDEIIVDVHPEEI-DSVTQIVTEEM---GSAFELDVPLDVNVGTGT 755754 D + +HDEI V EEI +V ++ E M G + LD G Sbjct: 307 KHGWDGDFAYMAWIHDEIQVACRTEEIAKTVIEVAQEAMRWVGEHWNFRCLLDTEGKMGA 366 Query: 755755 SWHD 755766 +W + Sbjct: 367 NWKE 370 >ref|NP_523320.1|DNA polymerase Length = 704 Score = 92.4 bits (228), Expect = 1e-16 Identities = 81/304 (26%), Positives = 131/304 (43%), Gaps = 22/304 (7%) Frame = +1 Query: 754921 LKTVAEDGRIHTTYQQTVAATGRLSSLDPNLQNIP-VRTESGRRIREIFIADPHVDDAR- 755094 L+ VAEDG+IH + A TGR + PNL IP VR+ G + R F A+ H+D Sbjct: 407 LRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITG 466 Query: 755095 ----LLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSK 755262 D S +E+R +AH + F +GE H + + + R Sbjct: 467 KPWVQAGIDASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQMAAELPTRDN 520 Query: 755263 VKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEI----VEQARAN 755430 K YG +YG + + + G + K L +++ E A+ + I VE ++ Sbjct: 521 AKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWV 580 Query: 755431 GYTETIMGRRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIAMLKVSDRL----- 755595 + + +RR++ L D R++ + AALN +Q + A I K+ ++K + L Sbjct: 581 AGEQQVKWKRRWIKGL--DGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLVEKGL 638 Query: 755596 ---GDHKSTVLLQVHDEIIVDVHPEEI-DSVTQIVTEEM---GSAFELDVPLDVNVGTGT 755754 D + +HDEI V EEI +V ++ E M G + LD G Sbjct: 639 KHGWDGDFAYMAWIHDEIQVACRTEEIAKTVIEVAQEAMRWVGEHWNFRCLLDTEGKMGA 698 Query: 755755 SWHD 755766 +W + Sbjct: 699 NWKE 702 >ref|NP_848283.1|DNA polymerase Length = 704 Score = 92.0 bits (227), Expect = 1e-16 Identities = 80/302 (26%), Positives = 129/302 (42%), Gaps = 22/302 (7%) Frame = +1 Query: 754921 LKTVAEDGRIHTTYQQTVAATGRLSSLDPNLQNIP-VRTESGRRIREIFIADPHVDDAR- 755094 L+ VAEDG+IH + A TGR + PNL IP VR+ G + R F A+ H+D+ Sbjct: 407 LRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDEITG 466 Query: 755095 ----LLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSK 755262 D S +E+R +AH + F +GE H + + + R Sbjct: 467 KPWVQAGIDASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQIAAELPTRDN 520 Query: 755263 VKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEI----VEQARAN 755430 K YG +YG + + + G + K L +++ E A+ + I VE ++ Sbjct: 521 AKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWV 580 Query: 755431 GYTETIMGRRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIAMLKVSDRL----- 755595 + + +RR++ L D R++ + +ALN +Q + A I K+ ++K + L Sbjct: 581 AGEQQVKWKRRWIKGL--DGRKVHVRSPHSALNTLLQSAGALICKLWIIKTEEMLVEKGL 638 Query: 755596 ---GDHKSTVLLQVHDEIIVDVHPEEIDSVTQIVTEE----MGSAFELDVPLDVNVGTGT 755754 D + VHDEI V EEI V +E +G + LD G Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIDTAQEAMRWVGDHWNFRCLLDTEGKMGP 698 Query: 755755 SW 755760 +W Sbjct: 699 NW 700 >ref|NP_041982.1|DNA polymerase Length = 704 Score = 92.0 bits (227), Expect = 1e-16 Identities = 81/302 (26%), Positives = 128/302 (42%), Gaps = 22/302 (7%) Frame = +1 Query: 754921 LKTVAEDGRIHTTYQQTVAATGRLSSLDPNLQNIP-VRTESGRRIREIFIADPHVDDAR- 755094 L+ VAEDG+IH + A TGR + PNL IP VR+ G + R F A+ H+D Sbjct: 407 LRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITG 466 Query: 755095 ----LLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSK 755262 D S +E+R +AH + F +GE H + + + R Sbjct: 467 KPWVQAGIDASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQIAAELPTRDN 520 Query: 755263 VKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEI----VEQARAN 755430 K YG +YG + + + G + K L +++ E A+ + I VE ++ Sbjct: 521 AKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWV 580 Query: 755431 GYTETIMGRRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIAMLKVSDRL----- 755595 + + +RR++ L D R++ + AALN +Q + A I K+ ++K + L Sbjct: 581 AGEQQVKWKRRWIKGL--DGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLVEKGL 638 Query: 755596 ---GDHKSTVLLQVHDEIIVDVHPEEIDSVTQIVTEE----MGSAFELDVPLDVNVGTGT 755754 D + VHDEI V EEI V +E +G + LD G Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGP 698 Query: 755755 SW 755760 +W Sbjct: 699 NW 700 >ref|NP_803295.1|tape measure protein Length = 910 Score = 91.3 bits (225), Expect = 2e-16 Identities = 121/599 (20%), Positives = 216/599 (36%), Gaps = 64/599 (10%) Frame = -1 Query: 57228 AGEVGSDAFLETMDTFAGDMAKEHAKSFDGLVDLAKAYVGQIGEAMLGGVFEQSKDSIAE 57049 AGE F+E T + F G+ +L A+ G G+F+ + A+ Sbjct: 227 AGENSITRFIEYTKTNLPIIGNIFKNVFVGINNLMNAFSGSST-----GIFQSLEQMTAK 281 Query: 57048 FVDWLSDPGVQAKAAELG---KTIGDVFSKVLGVVKNVITWFMGLPAPIQKTXXXXXXXX 56878 F +W G + +T G + +++G + + F API Sbjct: 282 FREWSEQVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAI 341 Query: 56877 XXXXXXXXXXG-TMASTIGTLITTFGAIAGVIAKIPAPLNILGG--LFRMISPL--LGLL 56713 A +G +IT GA +I I A N +GG + R+I+ + GLL Sbjct: 342 TGWIANLFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLL 401 Query: 56712 KVGL-------MAVGGAMKALWLT-----------------------MMANPXXXXXXXX 56623 + GL M + G +K + + ++ P Sbjct: 402 RAGLTILKGAFMLLKGPLKIISVIFQLLFGKIGLIRNAITGLVTVFGILGGPITIVIGVI 461 Query: 56622 XXXXXXXVWFFTQTETGKKM----WSAFMDWLGQAWEWIKXXXXXXXXXXXXXXXXAWNW 56455 V + + E + W+A ++ W +K A + Sbjct: 462 AALIAIFVLLWNKNEGFRNFIINAWNAIKTFMVNVWNVLKAVASVVWNAILTAITTAVSN 521 Query: 56454 VKDTSVAIWNGFISWIVGLWNGIIGTAKAV-----------FLGIGTAIITAWNWIKTKT 56308 V + + +WN ++++ GLWNGII A V F I T ++T W I T Sbjct: 522 VYNFIMIVWNQIVAYLQGLWNGIIAIATTVWNLLVTIITTVFTTIMTIVMTIWTAIWTFL 581 Query: 56307 SDVWNAIINWIKDTWNKIITTISDAV-----------NKVKNWISDAWTMIKTMTAKLWN 56161 S +WN II WN ++T I+ N + ++ W I T+ K+WN Sbjct: 582 STIWNTIITIATTIWNLLVTVITTVFTTIMTIAITIWNAIWTFLQTLWNTIVTVATKVWN 641 Query: 56160 GIKMAIARAIVSAVRTVQGKVQQIKNWITNTWNRVKNTTSNAWSGIKSAVRNGINGAVNF 55981 I AI+ A+ +A + I ++++ + N + ++ + S + + ++ A NF Sbjct: 642 AITTAISTALQAAWSFISNIWNTIWSFLSGILTTIWNKVVSIFTQVVSTISDKMSQAWNF 701 Query: 55980 VRRLPGRALSALGNIGSKLYNSGKAMIDGFKDGIXXXXXXXXXXVKDGLSRIRNFFPFSP 55801 + + + + I S L N ++ GF + + V S + +F Sbjct: 702 I---VTKGMQWVSTITSTLINFVNRVVQGFVNVVNKVSQGMTNAVNKVKSFVDDFVS--- 755 Query: 55800 AKEGPFSGKGWTWYSGQSMSEGLADGMASGTSDVVRQSEALMKAAAFDAPSIPGMTRPS 55624 +G M GL G+ + D+ ++ ++ K A A G+ PS Sbjct: 756 --------------AGADMIRGLMRGIGNMARDLAEKAASVAKGALNAAKRALGIHSPS 800 >ref|NP_932589.1|hypothetical protein Length = 507 Score = 90.9 bits (224), Expect = 3e-16 Identities = 98/481 (20%), Positives = 191/481 (39%), Gaps = 7/481 (1%) Frame = -2 Query: 175166 QWIDYLLIAIYFVFV----LGIGWFAKRGISSSIEFLLSGRSLPAWVTALAFVSANLGAV 174999 Q +D ++ A Y + L IGW K G + S + ++ RSLP W+ A ++AN+ A Sbjct: 2 QLLDMVIFAGYIGCIVMAGLVIGW-KKSGTTKS--YFMADRSLPWWILGCAILAANISAE 58 Query: 174998 EIMGMSATGAQYGMP-TMHYFWIGAVPAMLFLGVVMMPFYYGSKVRSVPEFMRRRFGTGA 174822 ++G TG+ Y M + F + A++ + +P++ +++ ++P+F+ ++ Sbjct: 59 HLIG--TTGSAYAMGIAIGAFELTGALALVVAAWLAIPYFVKNQITTMPQFLAMKYDNRV 116 Query: 174821 HLVNALSFAVAQILIAGVNLFLLGTIVNRLLGWPLWXXXXXXXXXXLSYITLGGLTAAIY 174642 + A + V L+ + +G + +G PL + Y +GGL++ ++ Sbjct: 117 RSMFATFWIVVYTLVNLTAVSYMGALAFTSIGIPLEVGVWALIGFAVLYSAVGGLSSLVW 176 Query: 174641 NEVLQFFVIVAALLPLTIIGLNRVGGWDGLVAKVSNDGMLGAEQLSSWPGEQLSGFSNPX 174462 + +Q +++ A + T L+ G G + + L E + + G Sbjct: 177 TDFIQVGILLTAGIACTWFTLDAYGVHVGSTSIAGSMVSLYKELPNHFQLVLEPGHPAYE 236 Query: 174461 XXXXXXXXXXXXXXXXGYWTTNFVEVQRAMASKSINAARLTPILGAFPKMLIPFIVIIPG 174282 Y+ N VQ A+A+KS+ A+ + AF K+L+P +VIIPG Sbjct: 237 NIPGILGVVGVFLGSLSYFAFNQFIVQGALAAKSVKEAQKGMVFAAFLKLLMPLVVIIPG 296 Query: 174281 MIAAVLVTQLTKFKQIASSVDEATAQAQTGVTYND-ALLLLMREVLPNXXXXXXXXXXXX 174105 ++ A + +T +D A L+ +P Sbjct: 297 IM--------------------AYSMTNGSLTPSDKAYPWLIDNFMPAGFHGLVMAALFA 336 Query: 174104 XXXXXXXXXXXAFNTVFSYDLWQQYVVKDREDSYYLKVGRYATIGACIVAIFTAL-IAGN 173928 + +T+F+ D+ + + + D +KV R + + A+ GN Sbjct: 337 AIISTLAAILNSISTMFTLDIVKVH-KPELSDKTLMKVARTVVVVCGAIGASLAIPFLGN 395 Query: 173927 FANLMDYLQTLFGFFNAPLFATFILGMFWKRMSPTAGWVGLVGGTLSAVAVFILSETGVF 173748 ++Q GF + F ++WK S A V + +A+ F + E Sbjct: 396 LDQAYHFIQEFVGFVTPAMLVIFFAALYWKTNSNAAIAVTVFSVAANAIVKFTVPELAWL 455 Query: 173747 D 173745 D Sbjct: 456 D 456 Score = 78.6 bits (192), Expect = 1e-12 Identities = 116/490 (23%), Positives = 206/490 (42%), Gaps = 25/490 (5%) Frame = -3 Query: 1600069 IAMAGIGVWTLKIGNKDSEGYLLGGRSLGPAVTALRLQSSSMSGYMFLGAGSLAYTKGY- 1599893 I MAG+ + K G S Y + RSL + + ++++S +G AY G Sbjct: 16 IVMAGLVIGWKKSGTTKS--YFMADRSLPWWILGCAILAANISAEHLIGTTGSAYAMGIA 73 Query: 1599892 ---FSLWYAMGDIGGGVLNLSILGRRMRKLSQILGSLTSIEYLEHRYPSPWIRAIAAPVA 1599722 F L A+ + L + + +QI T ++L +Y + + + A Sbjct: 74 IGAFELTGALALVVAAWLAIPYFVK-----NQIT---TMPQFLAMKYDN----RVRSMFA 121 Query: 1599721 VFCIFFYVMSQFIA----GGRGLEMVTGIPYAWALLIAVGVIVFYTFLGGYLAVAYTDFV 1599554 F I Y + A G + GIP + +G V Y+ +GG ++ +TDF+ Sbjct: 122 TFWIVVYTLVNLTAVSYMGALAFTSI-GIPLEVGVWALIGFAVLYSAVGGLSSLVWTDFI 180 Query: 1599553 QAIIMLIGMVWILIGTMQAVGGWTAGNNAVGEI------NPN---LLTMWGPDGFGSVQW 1599401 Q I+L + T+ A G + G + PN L+ G + ++ Sbjct: 181 QVGILLTAGIACTWFTLDAYGVHVGSTSIAGSMVSLYKELPNHFQLVLEPGHPAYENIPG 240 Query: 1599400 GVIIGAVLVF--SIGYMGWPHVNV-SHMAMKRPSVARTASMYATGFNLLFIPAPYIVGIM 1599230 I+G V VF S+ Y + V +A K A+ ++A LL I GIM Sbjct: 241 --ILGVVGVFLGSLSYFAFNQFIVQGALAAKSVKEAQKGMVFAAFLKLLMPLVVIIPGIM 298 Query: 1599229 ALILL-PNLDNPELAVFQVADTVLPNFAVGIVMAGIMAAIMSTADALLLQSGTIASQDLF 1599053 A + +L + A + D +P G+VMA + AAI+ST A+L T+ + D+ Sbjct: 299 AYSMTNGSLTPSDKAYPWLIDNFMPAGFHGLVMAALFAAIISTLAAILNSISTMFTLDIV 358 Query: 1599052 QRFIKKDMSDSQSVWVSRFTVLILAIIGYIVAVNDPPAVAEVVIFSTTVLG---AAFVPV 1598882 + K ++SD + V+R V++ IG +A+ + + F +G A + + Sbjct: 359 -KVHKPELSDKTLMKVARTVVVVCGAIGASLAIPFLGNLDQAYHFIQEFVGFVTPAMLVI 417 Query: 1598881 YVAAAWWKKANVPGAISSMVLGTVSSVVWQLTGLVDVTGVDPMGIGIV-CSTLALILVSL 1598705 + AA +W K N AI+ V ++ + + T + ++ +D + +V C L + Sbjct: 418 FFAALYW-KTNSNAAIAVTVFSVAANAIVKFT-VPELAWLDRFLMVLVGCGVLYSLFSGK 475 Query: 1598704 ATQKSHPVPA 1598675 + +H P+ Sbjct: 476 QVEDAHIAPS 485 >ref|YP_164331.1|hypothetical protein Length = 228 Score = 90.1 bits (222), Expect = 5e-16 Identities = 74/240 (30%), Positives = 110/240 (45%), Gaps = 12/240 (5%) Frame = -1 Query: 1681683 MCGRLNMSLDPADLADELRLDVISY----DYTPRYNVPPGSFVPIVVERLDDSGQLTRRL 1681516 MCGRL+ + D L + + + + RYNV P + V + RL+ + + + Sbjct: 1 MCGRLSQYTGMHEFVDALSMPNVLVNLVGEQSERYNVAPSTAVTTL--RLEGDALVAQPI 58 Query: 1681515 ETASWGLVPGWAKDTKIGFKAFNARSETVLEKPMFRQSIKRRRCALPIPGYYEWETTEAG 1681336 WG P WA+D NAR E V F + R R P+ G++EW E G Sbjct: 59 R---WGWRPFWARDRAA---PINARVEKVAHGRFF-SAAWRHRALCPVSGWFEW-VAEGG 110 Query: 1681335 --KQPWMMSAAGADPLFMAGLFEFWKQPD-----HSWLVSTTILTMEAAGHLQDVHHRMP 1681177 KQP+ + P+ A + +F D H ++ I+T ++AG + D+H R P Sbjct: 111 PRKQPFHIQHRDGSPILCAAIGQFPGLDDEPGEQHGFV----IITADSAGGMVDIHDRRP 166 Query: 1681176 VFLERGAVDGWIDPAVPSADVPPLLESTLEQVDPA-SVTRHKVGKSVGNVRNDGPELTAP 1681000 V L WIDPA ++ L Q +P+ S T + V +VGNVRN GP+L P Sbjct: 167 VVLPPELAREWIDPATTPERAEQIV---LHQGEPSESFTWYAVDPAVGNVRNQGPQLIEP 223 >ref|NP_958255.1|hypothetical protein Length = 81 Score = 90.1 bits (222), Expect = 5e-16 Identities = 39/68 (57%), Positives = 52/68 (76%) Frame = -1 Query: 1418847 ELSWQDQALCAQTDPEAFFPEKGGSTREAKRVCASCDVRSDCLEYALANDERFGIWGGMS 1418668 E WQ +ALCAQTDPE F PE G + R A++VC +C+V+S+CL +ALA E G+WGG++ Sbjct: 7 ETEWQSRALCAQTDPELFHPEIGRTCRNARKVCGACEVQSECLAHALAVPETDGVWGGLT 66 Query: 1418667 ERERRRLK 1418644 RERRRL+ Sbjct: 67 YRERRRLQ 74 Score = 53.9 bits (128), Expect = 4e-05 Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = +3 Query: 1373193 DWRHRAACLNEDPELFFP-IGNTGPALLQIEEAKTVCRRCEVVETCLQWALESGQDAGVW 1373369 +W+ RA C DPELF P IG T A+ VC CEV CL AL + GVW Sbjct: 9 EWQSRALCAQTDPELFHPEIGRT------CRNARKVCGACEVQSECLAHALAVPETDGVW 62 Query: 1373370 GGLSEDE 1373390 GGL+ E Sbjct: 63 GGLTYRE 69 >ref|NP_943883.1|topoisomerase II large subunit Length = 613 Score = 89.0 bits (219), Expect = 1e-15 Identities = 96/373 (25%), Positives = 160/373 (42%), Gaps = 9/373 (2%) Frame = +3 Query: 572595 RLEVFRFDGGITEFVDH----LSID-PPMTDTWRLQDT-GKFSETVPVLDSSGHLVSKEV 572756 R VF+ D + + L+++ PP+T + + GKFS+ G +VS Sbjct: 188 RFGVFQLDEDFEQVIQSRLLTLAVNFPPITFKYNGKKVEGKFSKFAAQF---GDVVSHND 244 Query: 572757 EREVGVDIALRWGTGYDTKVKSFVNVVSTPHGGTHLAGFEQASLKAMRKAVEANARXXXX 572936 + +++L + T + + SFVN V T GG H+ G + + ++ + Sbjct: 245 D-----NVSLFFATSEEYRQLSFVNGVHTKQGGNHVYGVLDSLSDELIPMIKRQHKIEIN 299 Query: 572937 XXXXXXXXXVLAGLTAVVTVQLAEPQFEGQTKEVLGT--AAVRQIVAKTVERQLGDILSS 573110 L + L P+++GQTKE L + A +R + + IL + Sbjct: 300 KARIKECL-----LIGLFIRNLVAPKYDGQTKERLSSPWAQIRDHMNLDYKALARKILKT 354 Query: 573111 TKRAEKQQAAVLMEKVVAELKSRISARTHKENQRRKTALEASSLPAKLYDCRDNGVENTE 573290 + + A+ L +K A+ +A T + + +K + A L G T Sbjct: 355 PEVIDPIIASALAKKEAADK----AAATKAQKKAKKANVAKHVAAAGL------GRLKTM 404 Query: 573291 LFIVEGDSAMGTAKAARNSDHQALFPIRGKILNVQKASLSDMLANVECAALIQVIGAGSG 573470 LF+ EGDSA+G RN + Q +P+RGK+LNV ++L N E A L+ ++ Sbjct: 405 LFLAEGDSAIGPFTRFRNEETQGSYPLRGKMLNVWNLPDHEVLKNKEIADLLGILNVELR 464 Query: 573471 RSFDIDAARYGRVIIMTDADVDG-AHIRTLLLTLFFRYMKPLVEQGRVFAAVPPLHRVEV 573647 +A Y + IMTDAD DG I L + F+++ EQGR+ P E Sbjct: 465 SK---EAPAYTDIAIMTDADQDGKGSIAMLAIAFFYKFWPHWFEQGRIHIVRTP----EY 517 Query: 573648 VTKRGTPNDVIYT 573686 ++ G D Y+ Sbjct: 518 ISTNGKKTDWSYS 530 Score = 46.2 bits (108), Expect = 0.008 Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 26/157 (16%) Frame = +3 Query: 571881 ARHLSVLSGLEAVRKRPGMYIGTTDSR-----------------GLMHCLWEIIDNAVDE 572009 ++ VLS E MYIG+T + GL+ E+IDN+VDE Sbjct: 2 SQEFKVLSDKEHCLINTDMYIGSTSTETHDVLVDGKFVQIAYVPGLVKITDEVIDNSVDE 61 Query: 572010 AL-GGFGKSILIELE-PDGSVAVTDSGRGIP--VDIEPKTGLTGVEVVL-----TKLHAG 572162 A+ F + IE+ D V+V D+GRG+P + + P+ GVEV L T+ AG Sbjct: 62 AIRTNFEHANQIEVVIKDNQVSVKDNGRGLPQGMVVTPE----GVEVPLPLAAWTRARAG 117 Query: 572163 GKFGGSSYAASGGLHGVGASVVNALSARLDVEVTRGS 572273 F S+ + G +GVG+++ N S E G+ Sbjct: 118 SNF--SADRKTIGKNGVGSALTNFFSDSFVGETGNGT 152 >ref|NP_052094.1|5B protein Length = 384 Score = 88.6 bits (218), Expect = 1e-15 Identities = 76/303 (25%), Positives = 130/303 (42%), Gaps = 23/303 (7%) Frame = +1 Query: 754921 LKTVAEDGRIHTTYQQTVAATGRLSSLDPNLQNIP-VRTESGRRIREIFIADPHVDDAR- 755094 L+ V +DG+IH A TGR + PNL +P VR+ G + R F A+ H+D Sbjct: 87 LRYVQDDGKIHGAVNPNGAVTGRATHSFPNLAQVPGVRSPYGEQCRSAFGAEHHLDGITG 146 Query: 755095 ----LLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSK 755262 D S +E+R +AH + F +GE + + + + + R Sbjct: 147 KPWVQAGIDASGLELRCLAH------FMARFDNGEYANEILNGDIHTKNQNAAELPTRDN 200 Query: 755263 VKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQARAN---- 755430 K YG +YG + + + G + K L +++ E A+ L E ++Q+ N Sbjct: 201 AKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIA-ALREAIQQSLVNSSAW 259 Query: 755431 -GYTETIMGRRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIAMLKVSDRL---- 755595 G + + +RR++ L D R++ + AALN +Q + A I K+ ++K + L Sbjct: 260 IGGEQKVQWKRRWIKGL--DGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLIEKG 317 Query: 755596 ----GDHKSTVLLQVHDEIIVDVHPEEIDSVTQIVTEE----MGSAFELDVPLDVNVGTG 755751 D + +HDE+ + EE+ V V +E +G + LD G Sbjct: 318 LKHGWDGDFAQMGWIHDEVQIACRTEEVAKVVVEVAQEAMRWVGEHWNFRCRLDTEGKIG 377 Query: 755752 TSW 755760 +W Sbjct: 378 PNW 380 >ref|NP_052093.1|DNA polymerase Length = 704 Score = 88.6 bits (218), Expect = 1e-15 Identities = 76/303 (25%), Positives = 130/303 (42%), Gaps = 23/303 (7%) Frame = +1 Query: 754921 LKTVAEDGRIHTTYQQTVAATGRLSSLDPNLQNIP-VRTESGRRIREIFIADPHVDDAR- 755094 L+ V +DG+IH A TGR + PNL +P VR+ G + R F A+ H+D Sbjct: 407 LRYVQDDGKIHGAVNPNGAVTGRATHSFPNLAQVPGVRSPYGEQCRSAFGAEHHLDGITG 466 Query: 755095 ----LLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSK 755262 D S +E+R +AH + F +GE + + + + + R Sbjct: 467 KPWVQAGIDASGLELRCLAH------FMARFDNGEYANEILNGDIHTKNQNAAELPTRDN 520 Query: 755263 VKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQARAN---- 755430 K YG +YG + + + G + K L +++ E A+ L E ++Q+ N Sbjct: 521 AKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIA-ALREAIQQSLVNSSAW 579 Query: 755431 -GYTETIMGRRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIAMLKVSDRL---- 755595 G + + +RR++ L D R++ + AALN +Q + A I K+ ++K + L Sbjct: 580 IGGEQKVQWKRRWIKGL--DGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLIEKG 637 Query: 755596 ----GDHKSTVLLQVHDEIIVDVHPEEIDSVTQIVTEE----MGSAFELDVPLDVNVGTG 755751 D + +HDE+ + EE+ V V +E +G + LD G Sbjct: 638 LKHGWDGDFAQMGWIHDEVQIACRTEEVAKVVVEVAQEAMRWVGEHWNFRCRLDTEGKIG 697 Query: 755752 TSW 755760 +W Sbjct: 698 PNW 700 >ref|NP_899529.1|topoisomerase II small subunit Length = 428 Score = 88.2 bits (217), Expect = 2e-15 Identities = 117/464 (25%), Positives = 200/464 (43%), Gaps = 16/464 (3%) Frame = +3 Query: 1440354 VSSEMESSFLEYAVSVIHSRALPDARDGLKPVQRRIVYQMGDMGLRPERGHVKSSRIVGD 1440533 +SS + LEYA+ I +RAL + DGLKPVQR ++Y + ++ +G Sbjct: 5 LSSIVNDEALEYAMYTIENRALANGIDGLKPVQRFVLYNV----IKDASTSFDKVAALGS 60 Query: 1440534 VMGKL-HPHGDTAIYDALVRLSQSFIMRVPLVDGHGNFGS-LDDGPAAPRYTEARLTSAS 1440707 + K+ + HG+T+ DAL ++ + VP+V G GNFGS + A+ RY A+L Sbjct: 61 SVSKIGYNHGETSAQDALALMAAEWQNNVPIVQGRGNFGSRMVKESASARYVYAKLHDNF 120 Query: 1440708 MQMIAGLDEDVVDFVGNYDNTLTQPEVLPSAFPNLLINGTSGIAVGMATNMAPHNPGEVI 1440887 +D+ + D P+ P +L+NG GIA G A N+ PH+P V Sbjct: 121 DLYF----KDIHLSPEHKDLEHVPPQFYVPVLPMILMNGVQGIATGFACNILPHDPEWVK 176 Query: 1440888 AACCHLIRNPEAGLAELMRFIPGPDLPTGGRIIGLDGVREAYETGRGTFRTRATVSIENI 1441067 A + E +++F P+ G+I L+ + TV I + Sbjct: 177 KAVLEYLAGKEIS-EPVVKF---PEF--YGKIEKLE---------HNKYAQIGTVEISGL 221 Query: 1441068 NARRKGIVVTELP-------YLVGPEKVVSKVKDAVGAKKLTGIASIDDYSDRKNGMRLV 1441226 A VVTE+P Y++ +K+V K K I+S D + R+ Sbjct: 222 TA-----VVTEIPTGFDHAKYIIELDKLVEKGK----------ISSYVDETSETFQFRVR 266 Query: 1441227 IGIKNGFNPEAVLAELYRQTPLEESFSMN-NVCLVDGQPRTL-GLRELLTVYLAHRIDVI 1441400 E+V+ L L+ +F+ N NV + Q R +REL+ ++ R+ + Sbjct: 267 FKRGAKMTEESVIKTL----KLQSTFTQNINVIDENYQIRHFDDVRELVKWFVDFRMSFL 322 Query: 1441401 RRRTVFQLRKAKDRLHLVEGLLIAILDIDEVIQLIRSSDDAATARTRLMDVFELSELQA- 1441577 +R ++ + +R L IA + E I+ + S + R EL +A Sbjct: 323 PKR----IQDSTERTEKRASLAIAKV---EFIKRVVSGTIILFGKKRAEVAAELKADEAF 375 Query: 1441578 ----TYILDLQLRRLTKFSRIELEAERDELRKKIAYLEDLLADE 1441697 T +L++ + ++T LE + +K+++Y + A + Sbjct: 376 SEHVTELLNMSVDKMTDDEIARLEKDATVAQKELSYWQKTTAQK 419 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 87.8 bits (216), Expect = 2e-15 Identities = 72/268 (26%), Positives = 114/268 (42%), Gaps = 2/268 (0%) Frame = -3 Query: 1806217 SYYAFKKRLPSTRSRRDRELMVVIQDVYEANYSCYGARKMWKAINREYADRFGPVARCTI 1806038 S Y + K P R L + +++ ++ GAR + R R + R Sbjct: 40 SSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATR----RGYQMGRWLA 95 Query: 1806037 ERLMHRLSIDGVRRRRKRPKTASARAEECPGDLVEREFTAAAPNCLWVADITYVPTRSGW 1805858 RLM L + ++ R K P L ER+F PN +W D+TY+ T W Sbjct: 96 GRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYL-ERQFAVTEPNQVWCGDVTYIWTGKRW 154 Query: 1805857 VYTTFILDVFHREIVGWQVTNHMRESLARDALTMALAAKFRAGEDVSGLVHHSDRGVQFR 1805678 Y +LD+F R+ VGW ++ L AL MA + + G G++ HSD+G + Sbjct: 155 AYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPG----GVMFHSDQGSHYT 210 Query: 1805677 SIRYGETLAESEVVASVGSRGDSYDNAMAEALNSVYKAELIDRREWSGLIEVM-AETSKW 1805501 S ++ + L ++ S+ RG+ +DN+ E K E + + E A T Sbjct: 211 SRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYI 270 Query: 1805500 IRWYNRQRLHSAIGYRPPFELQAE-WTN 1805420 + +Y+ R H G PP E + W N Sbjct: 271 VGYYSALRPHEYNGGLPPNESENRYWKN 298 Score = 87.8 bits (216), Expect = 2e-15 Identities = 72/268 (26%), Positives = 114/268 (42%), Gaps = 2/268 (0%) Frame = +2 Query: 1793462 SYYAFKKRLPSTRSRRDRELMVVIQDVYEANYSCYGARKMWKAINREYADRFGPVARCTI 1793641 S Y + K P R L + +++ ++ GAR + R R + R Sbjct: 40 SSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATR----RGYQMGRWLA 95 Query: 1793642 ERLMHRLSIDGVRRRRKRPKTASARAEECPGDLVEREFTAAAPNCLWVADITYVPTRSGW 1793821 RLM L + ++ R K P L ER+F PN +W D+TY+ T W Sbjct: 96 GRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYL-ERQFAVTEPNQVWCGDVTYIWTGKRW 154 Query: 1793822 VYTTFILDVFHREIVGWQVTNHMRESLARDALTMALAAKFRAGEDVSGLVHHSDRGVQFR 1794001 Y +LD+F R+ VGW ++ L AL MA + + G G++ HSD+G + Sbjct: 155 AYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPG----GVMFHSDQGSHYT 210 Query: 1794002 SIRYGETLAESEVVASVGSRGDSYDNAMAEALNSVYKAELIDRREWSGLIEVM-AETSKW 1794178 S ++ + L ++ S+ RG+ +DN+ E K E + + E A T Sbjct: 211 SRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYI 270 Query: 1794179 IRWYNRQRLHSAIGYRPPFELQAE-WTN 1794259 + +Y+ R H G PP E + W N Sbjct: 271 VGYYSALRPHEYNGGLPPNESENRYWKN 298 >ref|NP_108725.1|unknown Length = 1025 Score = 87.4 bits (215), Expect = 3e-15 Identities = 63/263 (23%), Positives = 97/263 (36%), Gaps = 17/263 (6%) Frame = -1 Query: 56463 WNWVKDTSVAIWNGFISWIVGLWNGIIGTAKAVFLGIGTAIITAWNWIKTKTSDVWNAII 56284 W + +T ++W F +W+V + I+ I+ WN K T D+WNA I Sbjct: 660 WTTIVNTIQSLWGAFTTWVVNMAKSIVD-----------GIVNGWNSFKQGTVDLWNATI 708 Query: 56283 NWIKDTWNKIITTISDAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQG 56104 W+KDTW + + + + I + W K T LWN + S + V Sbjct: 709 QWVKDTWASFKQWVVNMAKSIVDGIVNGWNSFKQGTVDLWNATIQWVKDTWASFKQWVVN 768 Query: 56103 KVQQIKNWITNTWNRVKNTT-----------SNAWSGIKSAVRNGINGAVNFVRRLPGRA 55957 + I + I N WN K T + W+ K V + N VN V++ Sbjct: 769 MAKSIVDGIVNGWNSFKQGTVDLWNATIQWVKDTWASFKQWVVDSANAIVNGVKQ----- 823 Query: 55956 LSALGNIGSKLYNSGKAMIDGFK---DGIXXXXXXXXXXVKDGLSRIRNFFPFSPAK--- 55795 N+ + K MI+G K DG+ VK + ++N K Sbjct: 824 --GWKNLKQGTIDLWKGMINGLKGIWDGLKQSVSDLIDNVKTTFNNLKNINLLDIGKAII 881 Query: 55794 EGPFSGKGWTWYSGQSMSEGLAD 55726 +G G W G G+ D Sbjct: 882 DGFVKGLKQKWEDGMKFISGIGD 904 Score = 84.3 bits (207), Expect = 3e-14 Identities = 106/561 (18%), Positives = 194/561 (34%), Gaps = 21/561 (3%) Frame = -1 Query: 57603 SANAQLKGLGYSAKDVENISGQVATALEGGMMTLGEGTRVAAGGLAAGVEQGKELEKYIG 57424 + NA++ +G + K + ++ + ++E +G + G AG L + Sbjct: 183 NTNAEVGDMGEAMKYIAPVANSMGLSIEEVSAAIGIMSDAGIKGSQAGTSLRGALSRLAK 242 Query: 57423 LVDAAAIGMNTSVDETAMIFNRVQGSGKVMTEELQMVEQRMPGFSNALQEH--IGVASDD 57250 DA M +DE + F +G K + +++ M++ G + Q++ + + + Sbjct: 243 PTDA----MQAKMDELGLSFYDSEGKMKPLKDQIGMLKDAFKGLTPEQQQNALVTLYGQE 298 Query: 57249 EFKKMVTAGEVGSDAFLETMDTFAGDMAKEHAKSFDGLVD-LAKAYVGQIGEAMLGGVFE 57073 M+ + G D E K+ DG D +AK + ++ E Sbjct: 299 SLSGMIALIDKGPDKL---------GKLTESLKNSDGAADKMAKTMQDNMNSSL-----E 344 Query: 57072 QSKDSIAEFVDWLSDPGVQAKAAELGKTIGDVFSKVLGVVKNVITWFMGLPAPIQKTXXX 56893 Q ++ ++ A + K + KV + ++ F+ P P+QK Sbjct: 345 QMMGAL------------ESAAIVVQKILAPAVRKVADSISGLVDKFVSAPEPVQKMIVT 392 Query: 56892 XXXXXXXXXXXXXXXGTMASTIGTLITTFGAIAGVIAKIP-------APLNILGGLFRMI 56734 + + IG L+ FG V+ ++ + L ++GG F I Sbjct: 393 IGL--------------IVAAIGPLLVIFGQAVLVLQRVKVGFLALRSGLALIGGSFTAI 438 Query: 56733 SPLLGLLKVGLMAVGGAMKALWLTMMANPXXXXXXXXXXXXXXXVWFFTQTETGKKMWSA 56554 S L +G++A A+ A+ + + N + E K+ W Sbjct: 439 S----LPVLGIIAAIAAVIAIGILVYKNWDKISKFGKEVWANVKKFASDAAEVIKEKWGD 494 Query: 56553 FMDWLGQAWEWIKXXXXXXXXXXXXXXXXAWNWVKDTSVAIWNGFISWIVGLWNGIIGTA 56374 W W+ IK A + VK+ WNG W LW G Sbjct: 495 ITQWFSDTWKSIKEGAKGLWNGTIQGAKDAVDSVKNA----WNGIKEWFANLWKGTTSGL 550 Query: 56373 KAVFLGIGTAIITAWNWIKTKT-------SDVWNAIINWIKDTWNKIITTISDAVNKVKN 56215 + + + T + IKT S +W + W I T + V + + Sbjct: 551 SSAWDSVTTTLAPFVETIKTIFQPMLDFFSGLWGQVKTIFGSAWEIIKTVVMGPVLLLID 610 Query: 56214 WISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKVQQIKNWITNTWNRVKNTTSNA 56035 I+ + K LW + AI + + V V G + N W + NT + Sbjct: 611 LITGDFNQFKEDFGMLWQTLATAIQTIVQTFVNIVVGLYSSFFQTVVNIWTTIVNTIQSL 670 Query: 56034 WSGIKSAVRNG----INGAVN 55984 W + V N ++G VN Sbjct: 671 WGAFTTWVVNMAKSIVDGIVN 691 >ref|NP_858986.1|DNA polymerase lacking N-terminal exonuclease domain Length = 794 Score = 86.7 bits (213), Expect = 6e-15 Identities = 77/335 (22%), Positives = 138/335 (41%), Gaps = 58/335 (17%) Frame = +1 Query: 754915 GLLKTVAEDGRIHTTYQQTVAATGRLSSLDPNLQNIPVRTESGRRIREIFIADPHVDDAR 755094 G+L V DG +H Q TGRLSS PNLQN+P +S ++ +F++ Sbjct: 430 GMLSLVGSDGIVHHQLQMVNTVTGRLSSALPNLQNLPKGDKS--EVKTLFVS--RFPGGF 485 Query: 755095 LLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVD---------- 755244 ++ +D++ +E+ + +LSGD ALI + G D+H ++ GV D V Sbjct: 486 IVQSDFTALEIYVQGNLSGDIALIADLRAGLDMHCKRLAQKEGVSYDYVFERAKDKKHIE 545 Query: 755245 ----SAMRSKVKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEIV 755412 ++ RSK K S+ YG A ++ + VDE K ++ E + + +Y + Sbjct: 546 YIVWNSKRSKAKGFSFQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTM 605 Query: 755413 EQARAN----------------------GYTETIMGRRRYL-----PALHSDRRQLR-DM 755508 ++ N Y T G+R + P +R ++ Sbjct: 606 KELERNLIPSKMYIASSYEAGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTF 665 Query: 755509 AERAALNAPIQGSAADIMKIAMLKVSDRLGDH-----KSTVLLQVHDEIIVDVHPEE--- 755664 + N P+QG+ + MK AM + + +S ++ VHD +D PE Sbjct: 666 SSTTTKNYPVQGTGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPEVAKE 725 Query: 755665 --------IDSVTQIVTEEMGSAFELDVPLDVNVG 755745 ++ ++ + + +DVP + ++G Sbjct: 726 SMALLHACMEEASRYIESQFAWKLHIDVPSETSIG 760 >ref|YP_024841.1|Pas55 Length = 1415 Score = 86.3 bits (212), Expect = 7e-15 Identities = 89/312 (28%), Positives = 138/312 (44%), Gaps = 14/312 (4%) Frame = +1 Query: 754867 HLLAYRDSTKLKQTVVG-------LLKTVAEDGRIHTT--YQQTVAATGRLSSLDPNLQN 755019 HL R+ K +VG L+ ++ DGR+H + Q ATGR S P L Sbjct: 1129 HLPKVREIAKHVFRIVGARSVYQTLMDNMSPDGRVHPKIGFDQ---ATGRWSVTRPGLTV 1185 Query: 755020 IPVRTESGRRI-REIFIADPHVDDARLLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLH 755196 + R GR + R + + DP L++AD SQ++MR +A LS D A I+ K +D H Sbjct: 1186 LGKR--GGRHVERAVLLPDP---GEVLMSADLSQVDMRAVAGLSQDLAYIEMLKK-DDPH 1239 Query: 755197 SYVGSKVFGVGIDEVDSAMRSKVKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFER 755376 + + ++FG + R + KA+ +G YG +S I + ER Sbjct: 1240 AEIAKELFGT------ADRREEAKAIGHGWNYGRGIKAISEGQEIEPALVRRFDASMRER 1293 Query: 755377 FGAVKDYLDEIVEQARANGYTETIMGRRRYLPALHSDRRQLRDMAERAALNAPI---QGS 755547 FG + ++ E+ A A + G R +R +RA P QG+ Sbjct: 1294 FGRLVEWQTEVRAVAEAGQLLDNGFG------------RLMRADPQRAHTQGPALMGQGA 1341 Query: 755548 AADIMKIAMLKVSDRLGDHKSTVLLQVHDEIIVDVHPEEIDSVTQIVTEEMGSAFELDVP 755727 A DIM +L++ R+ + Q+HDEI+ V E + V + V E + + VP Sbjct: 1342 ARDIMMTGLLRLDRRI---LPMLRAQIHDEIVFSVPVAEAEEVGRAVVEALSFEWR-GVP 1397 Query: 755728 LDVNVG-TGTSW 755760 + +V TGT W Sbjct: 1398 ILADVSKTGTDW 1409 >ref|NP_075289.1|gp22 Length = 823 Score = 85.9 bits (211), Expect = 9e-15 Identities = 77/291 (26%), Positives = 127/291 (43%), Gaps = 15/291 (5%) Frame = -1 Query: 56343 IITAWNWIKTKTSDVWNAIINWIKDTWNKIITTISDAVNKVKNWISDAWTMIKTMTAKLW 56164 I TAW +K K ++VWN+I I +I + + +S WT + + + Sbjct: 381 IPTAWEGVKLKAAEVWNSIPTMAATA----IASIRATLATLPGLLSGIWTTVTASASSAF 436 Query: 56163 NGIKMAIARAIVSAVRTVQGKVQQIKNWITNTWNRVKNTTSNAWSGIKSAVRNGINGAVN 55984 I A++ S V T + + + I N ++ + A+S + SA +G V Sbjct: 437 ATIGAAVSAGARSVVNTAGNIFRSMGSVIANAFSAAVSAVQTAFSQMVSAAASGAQQVVA 496 Query: 55983 FVRRLPGRALSALGNIGSKLYNSGKAMIDGFKDGIXXXXXXXXXXVKDGLSRIRNFFPFS 55804 V+ L G+ +A GN GS L +GKA++DG GI K GLS + +F Sbjct: 497 EVQALGGKIAAAAGNFGSILVAAGKALMDGLLSGI-----------KAGLSAVLDFASGI 545 Query: 55803 PAK----EGPF-SGKGWTWYSGQSMSEGLADGMASGTSDVVRQSEALMKAAAFDAPSIPG 55639 AK +GP + +G+++ EGL G+ +G V+ ++ + K F A Sbjct: 546 AAKIAAVKGPLPKDRKELIPAGEALMEGLGTGIENGLDPVLDRAREIAK-QIFSAFKETF 604 Query: 55638 MTRPSSSA----------SGLDEDTGPTSNINFHITNPVAEPTSETARKAS 55516 T P+S A SGL T+ + +T+ + PT+E A +S Sbjct: 605 GTAPTSLAFNLGSMQGDLSGLQTSLESTATASRDLTSSLTAPTAELASGSS 655 >ref|YP_195230.1|PhoH Length = 250 Score = 85.9 bits (211), Expect = 9e-15 Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 10/185 (5%) Frame = +3 Query: 665733 FGIGPAGTGKTYLAMAMAINAL--QHKEVSRIILTRPAVEAGESLGYLPGTLNEKIDPYV 665906 + G AGTGKT++A+ +A+ + ++ ++ + R V E +G+LPGT +K Y Sbjct: 55 YAYGCAGTGKTFVALYLALKDVLDEYTPYDKVYIVRSLVATRE-IGFLPGTHEDKASLYQ 113 Query: 665907 RP---LYDALHDMVDPESIPLLIET----GTIEVAPLAYMRGRTLNDAFIILDEAQNTTG 666065 P + ++ +M D S +L E TI +++RG TL+++ II+DE QN Sbjct: 114 IPYKNMVKSMFEMPDDPSFEMLYENLKQQETISFWSTSFLRGSTLDNSIIIVDECQNLNF 173 Query: 666066 EQMKMFLTRLGFGARMVVTGDVSQIDL-PGKTRSGLNVVQDILTGIEDLKFCHLGSKDVV 666242 ++ +TR+G ++++ GD +Q DL R+G+ Q I+ + + G +D+V Sbjct: 174 HELDSIMTRVGQDSKIIFCGDANQSDLQKTNERTGILDFQRIIQKMNEFSLIEYGIEDIV 233 Query: 666243 RHSLV 666257 R LV Sbjct: 234 RSGLV 238 Score = 69.3 bits (168), Expect = 9e-10 Identities = 44/172 (25%), Positives = 90/172 (52%), Gaps = 11/172 (6%) Frame = -1 Query: 1358586 GRAGTGKSALALMAGLQKVLEE-NKHSKIMVFRPIYAVGGQSLGFLPGSEGEKMNPW--- 1358419 G AGTGK+ +AL L+ VL+E + K+ + R + A + +GFLPG+ +K + + Sbjct: 58 GCAGTGKTFVALYLALKDVLDEYTPYDKVYIVRSLVAT--REIGFLPGTHEDKASLYQIP 115 Query: 1358418 ----AEAVFDTLGALVSKNVIEEVMNRDLLDVLPLTHIRGRSLHDAFVIVDEAQSLERNV 1358251 +++F+ + + E + ++ + + +RG +L ++ +IVDE Q+L + Sbjct: 116 YKNMVKSMFEMPDDPSFEMLYENLKQQETISFWSTSFLRGSTLDNSIIIVDECQNLNFHE 175 Query: 1358250 LLTVLSRIGMNSKVVLTHDVAQRDNLRVGRHDGV---AAVIEKLKGHELFAH 1358104 L ++++R+G +SK++ D Q D + G+ +I+K+ L + Sbjct: 176 LDSIMTRVGQDSKIIFCGDANQSDLQKTNERTGILDFQRIIQKMNEFSLIEY 227 >ref|NP_058491.1|dUTPase Length = 175 Score = 84.3 bits (207), Expect = 3e-14 Identities = 58/166 (34%), Positives = 84/166 (50%), Gaps = 26/166 (15%) Frame = +2 Query: 585617 IDLKLLDAGITPPSYAHASDAGADLCSAIDFVLEPFERKVVPTGIAIALPIGTAGFVHPR 585796 + +KLL P H +DAG D+ SA VLEP E+ V+ T +A+++P G G + R Sbjct: 11 LQVKLLSENARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSR 70 Query: 585797 SGLSSKHGVTVINAPGTIDAGYRGEIKVPLIN-------------------LDARTPVR- 585916 SG+SSK + + G IDAGY G + + + N +D +R Sbjct: 71 SGVSSKTHLVI--ETGKIDAGYHGNLGINIKNDAIASNGYITPGVFDIKGEIDLSDAIRQ 128 Query: 585917 -----ISRGDRIAQLVIQEIKQADFTLVESLD-DSDRGAGGFGSTG 586036 I+ GD++AQLVI I + VE + S+RGA GFGS+G Sbjct: 129 YGTYQINEGDKLAQLVIVPIWTPELKQVEEFECVSERGAKGFGSSG 174 >ref|NP_803332.1|helicase Length = 423 Score = 84.0 bits (206), Expect = 4e-14 Identities = 100/430 (23%), Positives = 190/430 (44%), Gaps = 24/430 (5%) Frame = -2 Query: 324239 MGLGKTLQALSLFTHIKNTTANASPILVVAPTSVMS-TWRAEAEKF--APGLRVTTISAT 324069 MGLGKT+ L+ F+ ++ + +LV+AP V TW E +K+ L+V+ + T Sbjct: 1 MGLGKTVSTLTAFSELQ--LLDTKKMLVIAPKQVAKDTWVDEVDKWNHLNHLKVSLVLGT 58 Query: 324068 EKKRKTALALEIEDADLVITSYAILRLDAQAFRSIQW--DTFVLDEAQFVKNRTAKVHTA 323895 K+R AL E AD+ +T+ + ++ +W D V+DE K+ ++ + Sbjct: 59 PKERNDALNTE---ADIYVTNKENTKWLCDQYKK-EWPFDMVVIDELSTFKSPKSQRFKS 114 Query: 323894 AKG---IQARFRLAITGTPMENSLTDLWSLYSITSPG--LLPGIEKFRREIVLPIESGES 323730 K + RF + +TGTP NSL DLW+ + G L ++R P Sbjct: 115 IKKKLPLINRF-IGLTGTPSPNSLQDLWAQVYLIDRGERLESSFSRYRERYFKPTHQVSE 173 Query: 323729 PEGMALLRRRIRPFMKRRNKELVAA-------DLPPKQEQILSVELSSKHRDLY-----N 323586 LR + R +++ + D+P + + +V LS K R +Y N Sbjct: 174 HVFNWELRDGSEEKIYERIEDICLSMKAKDYLDMPDRVDTKQTVVLSEKERKVYAELEKN 233 Query: 323585 TVLQKERKKLLGLINDMDRNRFAIFRSLTLLRMLAIDPYLIDEKYEAIGSSKLSALFSHL 323406 +L+ E + + + +N ++ + L L A+ Y DE I KL L + Sbjct: 234 YILESEEEGTV-----VAQNGASLSQKLLQLSNGAV--YTDDEDVRLIHDKKLDKLEEII 286 Query: 323405 DDIIAEGHRTIIFSQFTSFLSRVGEQLDHRNINYCYLDGSTRNRGAVIDDFRAGEAPIFL 323226 ++ ++G ++F F + D I + + +T + + +G+ + + Sbjct: 287 EE--SQGQPILLFYNF---------KHDKERILQRFKEATTLEDSNYKERWNSGDIKLLI 335 Query: 323225 ISLKAGGFGLTLTEADYVFL-LDPWWNPAVEAQAVDRAHRIGQTKNVMVYRMVSEKTIEE 323049 + G GL L + ++ + W+ + QA R +R GQ +++ ++++ TI++ Sbjct: 336 AHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARLYRQGQNHTTIIHHIMTDNTIDQ 395 Query: 323048 KVL-ALQERK 323022 +V ALQ ++ Sbjct: 396 RVYKALQNKE 405 Score = 75.5 bits (184), Expect = 1e-11 Identities = 87/385 (22%), Positives = 166/385 (43%), Gaps = 20/385 (5%) Frame = +3 Query: 367764 LRILVYYGSARPRGDAFDAALAESDLVITTYATASRDIAELERIGWV--RVVLDEAQVIK 367937 L++ + G+ + R DA + E+D+ +T ++ + + + W VV+DE K Sbjct: 50 LKVSLVLGTPKERNDALNT---EADIYVTNKEN-TKWLCDQYKKEWPFDMVVIDELSTFK 105 Query: 367938 NRLSQTTKAIRRLNG--GQKIALTGTPVENRLSELWSIMDFVNPG--MLGTPEKFRERFV 368105 + SQ K+I++ + I LTGTP N L +LW+ + ++ G + + ++RER+ Sbjct: 106 SPKSQRFKSIKKKLPLINRFIGLTGTPSPNSLQDLWAQVYLIDRGERLESSFSRYRERYF 165 Query: 368106 RPIEVRADEERAHRLRRITRPYILRRTK-----TDPRIIDDLPEKIEIKQHYRLTVEQAS 368270 +P ++ LR + I R + + D+P++++ KQ L+ ++ Sbjct: 166 KPTHQVSEHVFNWELRDGSEEKIYERIEDICLSMKAKDYLDMPDRVDTKQTVVLSEKERK 225 Query: 368271 LYQSVVAE-MMGRIEESSGIERRGLVLAAMTKLKQVCN-------HPAHLLHDGSAIGQR 368426 +Y + ++ EE + + + G L+ KL Q+ N L+HD Sbjct: 226 VYAELEKNYILESEEEGTVVAQNGASLS--QKLLQLSNGAVYTDDEDVRLIHD------- 276 Query: 368427 SGKLERFEEIMSETLAEGDRVLCFTQFTDFGEMLVPHLAAKFDTDVAYLAGSTSKQRRTQ 368606 KL++ EEI+ E ++G +L F F E ++ + L S K+R Sbjct: 277 -KKLDKLEEIIEE--SQGQPILLFYNFKHDKERILQRF-----KEATTLEDSNYKER--- 325 Query: 368607 IVKDFQEPDGPKIFVLSLKAGGTGLNLTAANQ-VVHLDRWWNPAVENQATDRAFRIGQKR 368783 K+ + + G GLNL +V W+ + QA R +R GQ Sbjct: 326 -----WNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARLYRQGQNH 380 Query: 368784 RVQVRKFIGIGTLEERIDAILEEKK 368858 + + T+++R+ L+ K+ Sbjct: 381 TTIIHHIMTDNTIDQRVYKALQNKE 405 Score = 42.0 bits (97), Expect = 0.16 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 11/171 (6%) Frame = -3 Query: 409600 DSLDDQGMVNAESLRLSLRVGA-SQKDRRLDKPGRLVLTTYQNLGRFQLSLGQVEW--GA 409430 D +D +N L++SL +G +++ L+ + +T +N ++ + EW Sbjct: 39 DEVDKWNHLN--HLKVSLVLGTPKERNDALNTEADIYVTNKENT-KWLCDQYKKEWPFDM 95 Query: 409429 VVFDEAQQIKNPEILTSRAAKGLQADFKLL-----CTGTPVENSLRDIWS---LLDTAQP 409274 VV DE K+P+ S+ K ++ L+ TGTP NSL+D+W+ L+D + Sbjct: 96 VVIDELSTFKSPK---SQRFKSIKKKLPLINRFIGLTGTPSPNSLQDLWAQVYLIDRGE- 151 Query: 409273 DLLGSWAEFRERWIKNVENLPVGEQVVQGRELREHIGRFMLRRTKEDNIQD 409121 L S++ +RER+ K ++ EH+ + LR E+ I + Sbjct: 152 RLESSFSRYRERYFKPT------------HQVSEHVFNWELRDGSEEKIYE 190 >ref|NP_899269.1|deoxyuridine 5'-triphosphate nucleotidohydrolase Length = 165 Score = 84.0 bits (206), Expect = 4e-14 Identities = 57/149 (38%), Positives = 81/149 (54%), Gaps = 14/149 (9%) Frame = +2 Query: 585632 LDAGITPPSYAHASDAGADLCSAID--FVLEPFERKVVPTGIAIAL----------PIGT 585775 LDA I P DAG DL +AI+ L+P + V+P+G+ I + +G Sbjct: 17 LDA-IEPIGVKDPDDAGIDLRAAIEESIELQPGDSVVIPSGVKIHIGSHPLHQQYTDLGV 75 Query: 585776 AGFVHPRSGLSSKHGVTVINAPGTIDAGYRGEIKVPLINLDARTPVRISRGDRIAQLVIQ 585955 G + PRSGL KH + + N G IDA Y+GEI + + N + + I RGDRI QL+ Sbjct: 76 YGAIAPRSGLGFKHFLRLANTIGIIDANYQGEIMIKIRN-EGDDVLHIERGDRICQLIFH 134 Query: 585956 E-IKQADFTLVESLD-DSDRGAGGFGSTG 586036 +K F V++ D ++DRGA GFG +G Sbjct: 135 TYVKNVQFEEVDTFDEETDRGARGFGGSG 163 >ref|NP_112708.1|TMP Length = 937 Score = 83.6 bits (205), Expect = 5e-14 Identities = 61/256 (23%), Positives = 97/256 (37%), Gaps = 1/256 (0%) Frame = -1 Query: 56463 WNWVKDTSVAIWNGFISWIVGLWNGIIGTAKAVFLGIGTAIITAWNWIKTKTSDVWNAII 56284 W V +T ++W F +W++ + I+ I+ WN K T D+WNA + Sbjct: 660 WTTVVNTIQSLWGAFTTWVINMAKSIVD-----------GIVNGWNSFKQGTVDLWNATV 708 Query: 56283 NWIKDTWNKIITTISDAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQG 56104 W+KDTW + D+ N + N + W +K T LWNG Sbjct: 709 QWVKDTWASFKQWVVDSANAIVNGVKQGWENLKQGTIDLWNG------------------ 750 Query: 56103 KVQQIKNWITNTWNRVKNTTSNAWSGIKSAVRNGINGAVNFVRRLPGRALSALGNIGSKL 55924 + N W G+K +VRN I+ + L NI L Sbjct: 751 ---------------MINGLKGIWDGLKQSVRNLIDNVKT--------TFNNLKNI--NL 785 Query: 55923 YNSGKAMIDGFKDGIXXXXXXXXXXVKDGLSRIRNFFPFSPAKEGPF-SGKGWTWYSGQS 55747 + GKA+IDG G+ +DG+ I + +GP + +G++ Sbjct: 786 LDIGKAIIDGLVKGL-------KKKWEDGMKFISGIGDWIRKHKGPIRKDRKLLIPAGKA 838 Query: 55746 MSEGLADGMASGTSDV 55699 + GL G+ G +V Sbjct: 839 IMTGLNSGLTGGFRNV 854 Score = 81.3 bits (199), Expect = 2e-13 Identities = 111/597 (18%), Positives = 208/597 (34%), Gaps = 59/597 (9%) Frame = -1 Query: 57597 NAQLKGLGYSAKDVENISGQVATALEGGMMTLGEGTRVAAGGLAAGVEQGKELEKYIGLV 57418 NA++ +G + K + ++ + ++E +G + G AG L + Sbjct: 185 NAEVGDMGEAMKYIAPVANSMGLSIEEVSAAIGIMSDAGIKGSQAGTSLRGALSRLADPT 244 Query: 57417 DAAAIGMNTSVDETAMIFNRVQGSGKVMTEELQMVEQRMPGFSNALQEHIGVASDDEFKK 57238 DA M +DE + F +G K + +++ M++ G + Q++ V Sbjct: 245 DA----MQAKMDELGLSFYDSEGKMKPLKDQIGMLKDAFKGLTPEQQQNALVT------- 293 Query: 57237 MVTAGEVGSDAFLETMDTFAGDMAK--EHAKSFDGLVD-LAKAYVGQIGEAM--LGGVFE 57073 G+ + +D + K E K+ DG D +AK + ++ + G FE Sbjct: 294 --LYGQESLSGMMALIDKGPDKLGKLTESLKNSDGAADKMAKTMQDNMNSSLEQMMGAFE 351 Query: 57072 QSKDSIAEFVDWLSDPGVQAKAAELGKTIGDVFSKVLGVVKNVITWFMGLPAPIQKTXXX 56893 + A + K + KV + ++ F+ P P+QK Sbjct: 352 SA-------------------AIVVQKILAPAVRKVADSISGLVDKFVSAPEPVQKMIVT 392 Query: 56892 XXXXXXXXXXXXXXXGTMASTIGTLITTFGAIAGVIAKIP-------APLNILGGLFRMI 56734 + + IG L+ FG + ++ + L ++GG F I Sbjct: 393 IGL--------------IVAAIGPLLVIFGQAVVTLQRVKVGFLALRSGLALIGGSFTAI 438 Query: 56733 S-PLLGLLKV--GLMAVGGAMKALWLTMMANPXXXXXXXXXXXXXXXVWFFTQTETGKKM 56563 S P+LG++ ++A+G + W + ++ GK++ Sbjct: 439 SLPVLGIIAAIAAVIAIGILVYKNWDKI-------------------------SKFGKEV 473 Query: 56562 WSAFMDWLGQAWEWIKXXXXXXXXXXXXXXXXAWNWVKDTSVAIWNGFISWIVGLWNGII 56383 W+ + A E IK W DT WN + GLW+G + Sbjct: 474 WANVKKFASDAAEVIKEKWGDIT-----------QWFSDT----WNNIKNGAKGLWDGTV 518 Query: 56382 GTAKAVFLGIGTAIITAWNWIKTKTSDVWNAIINWIKDTWNKIITTISDAVNKVK----- 56218 AK ++ AWN IK +++W + + W+ + TT++ V +K Sbjct: 519 QGAKNAV----DSVKNAWNGIKEWFTNLWKGTTSGLSSAWDSVTTTLAPFVETIKTIFQP 574 Query: 56217 --NWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKVQQIKN------------- 56083 ++ S W ++T+ W IK + ++ + + G Q K Sbjct: 575 ILDFFSGLWGQVQTIFGSAWEIIKTVVMGPVLLLIDLITGDFNQFKKDFAMLWQTLFTNI 634 Query: 56082 -----------------W---ITNTWNRVKNTTSNAWSGIKSAVRNG----INGAVN 55984 W ++N W V NT + W + V N ++G VN Sbjct: 635 QTLVTTYVQIVVGFFTAWGQTVSNIWTTVVNTIQSLWGAFTTWVINMAKSIVDGIVN 691 >ref|YP_024986.1|DNA polymerase I Length = 633 Score = 82.4 bits (202), Expect = 1e-13 Identities = 115/443 (25%), Positives = 181/443 (40%), Gaps = 45/443 (10%) Frame = +1 Query: 754576 ELPLVPVLARMELAGIAVDEAGLSGLIDEFTKQANASAELAYEAIGHEVNLGSPKQLQTV 754755 E ++P L R E G+ VD I + + ++ G E N SPKQ++ V Sbjct: 210 ERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQAKMFQLAGREFNPNSPKQVREV 269 Query: 754756 --------LFDELDMPKTKRTKTGYTT-DAEALAELFIKTEHPFLQHLLAYRDSTKLKQT 754908 ++ D +RT TG DA+AL + + P +L R + K K T Sbjct: 270 FGAKEERGVWTSRDGTVLERTATGNPCLDADALRAM----KDPLAAAVLELRSNIKTKDT 325 Query: 754909 VVGLLKTVAED---GRIHTTYQQTVA-----ATGRLSSLDPNLQNIPVRTESGRRIREIF 755064 L K V E GR++ Q TGRLS P LQ IP R +RI I Sbjct: 326 F--LAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPALQQIPSRN---KRIAAII 380 Query: 755065 IADPHVDDARL-LTADYSQIEMRIMAHLSG--DAALIQAFKDGE--DLHSYVGSKVFGVG 755229 ++ +L L +D + E+RI AHL + A+ +A+ + DLH +VG + G+ Sbjct: 381 KPAFLPEEGQLWLDSDMASFEVRIFAHLVAAYNPAIARAYAENPELDLHQWVGD-LMGIP 439 Query: 755230 IDEVDSAMRSKVKAMSYGLVYGLSAYGLSRQLAIGVD-------------------EAKN 755352 + S ++ K M+ G+++ ++ L + + EAK Sbjct: 440 RNASYSG-QANAKQMNLGMIFNRGDGAVADSLGMPWEWCEFTDKKGDLIRYKKAGPEAKA 498 Query: 755353 LMEQYFERFGAVKDYLDEIVEQARANGYTETIMGRRRYLPALHSDRRQLRDMAERAALNA 755532 ++ Y + VK + A G+ +T GRR P + + A Sbjct: 499 VIAAYHTQIQGVKTLATRAQKIAEERGWIQTAHGRRLRFPNGYKSYK---------ASGI 549 Query: 755533 PIQGSAADIMKIAMLKVSDRLGDHKSTVLLQVHDEIIVDVHPEEIDSVTQIVTEEMGSAF 755712 IQ +AAD K L++ D LG S ++L HD + +D + + E + A Sbjct: 550 LIQATAADENKENWLRIEDALGSDGS-MILNTHDS-----YSMSVDENWKPIWERVKKAV 603 Query: 755713 E---LDVPLDVNV-GTGTSWHDA 755769 E L VPL + G G +W +A Sbjct: 604 ERQTLRVPLLLEFDGVGKNWAEA 626 >ref|NP_803328.1|dUTPase Length = 186 Score = 82.4 bits (202), Expect = 1e-13 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 37/177 (20%) Frame = +2 Query: 585617 IDLKLLDAGITPPSYAHASDAGADLCSAIDFVLEPFERKVVPTGIAIALPIGTAGFVHPR 585796 + +KLL P H +DAG D+ SA VLEP E+ V+ T +A+++P G G + R Sbjct: 11 LQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSR 70 Query: 585797 SGLSSKHGVTVINAPGTIDAGYRGEIKVPLIN-------------LDA------------ 585901 SG+SSK ++ G IDAGY G + + + N +DA Sbjct: 71 SGVSSK--TYLVIETGKIDAGYHGNLGINIKNDEERDGIPFLYDDIDAELEDGLISILDI 128 Query: 585902 -----------RTPVRISRGDRIAQLVIQEIKQADFTLVESLDD-SDRGAGGFGSTG 586036 R +I++GD++AQLVI I + VE + S+RGA GFGS+G Sbjct: 129 KGNYVQDGRGIRRVYQINKGDKLAQLVIVPIWTPELKQVEEFESVSERGAKGFGSSG 185 >ref|NP_803278.1|dUTPase Length = 169 Score = 82.4 bits (202), Expect = 1e-13 Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 26/166 (15%) Frame = +2 Query: 585617 IDLKLLDAGITPPSYAHASDAGADLCSAIDFVLEPFERKVVPTGIAIALPIGTAGFVHPR 585796 + ++LL P H +DAG D+ SA VLEP E+ V+ T +A+++P G G + R Sbjct: 5 LQVRLLSENARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSR 64 Query: 585797 SGLSSKHGVTVINAPGTIDAGYRGEIKVPLIN-------------------LDARTPVR- 585916 SG+SSK + + G IDAGY G + + + N +D +R Sbjct: 65 SGVSSKTHLVI--ETGKIDAGYHGNLGINIKNDAIASNGYITPGVFDIKGEIDLSDAIRQ 122 Query: 585917 -----ISRGDRIAQLVIQEIKQADFTLVESLDD-SDRGAGGFGSTG 586036 I+ GD++AQLVI I + VE + S+RG GFGS+G Sbjct: 123 YGTYQINEGDKLAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSG 168 >ref|NP_958659.1|77ORF021 Length = 180 Score = 82.4 bits (202), Expect = 1e-13 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 37/177 (20%) Frame = +2 Query: 585617 IDLKLLDAGITPPSYAHASDAGADLCSAIDFVLEPFERKVVPTGIAIALPIGTAGFVHPR 585796 + +KLL P H +DAG D+ SA VLEP E+ V+ T +A+++P G G + R Sbjct: 5 LQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSR 64 Query: 585797 SGLSSKHGVTVINAPGTIDAGYRGEIKVPLIN-------------LDA------------ 585901 SG+SSK ++ G IDAGY G + + + N +DA Sbjct: 65 SGVSSK--TYLVIETGKIDAGYHGNLGINIKNDEERDGIPFLYDDIDAELEDGLISILDI 122 Query: 585902 -----------RTPVRISRGDRIAQLVIQEIKQADFTLVESLDD-SDRGAGGFGSTG 586036 R +I++GD++AQLVI I + VE + S+RGA GFGS+G Sbjct: 123 KGNYVQDGRGIRRVYQINKGDKLAQLVIVPIWTPELKQVEEFESVSERGAKGFGSSG 179 >ref|YP_024429.1|DNA polymerase I Length = 633 Score = 82.0 bits (201), Expect = 1e-13 Identities = 115/443 (25%), Positives = 181/443 (40%), Gaps = 45/443 (10%) Frame = +1 Query: 754576 ELPLVPVLARMELAGIAVDEAGLSGLIDEFTKQANASAELAYEAIGHEVNLGSPKQLQTV 754755 E ++P L R E G+ VD I + + ++ G E N SPKQ++ V Sbjct: 210 ERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQAKMFQLAGREFNPNSPKQVREV 269 Query: 754756 --------LFDELDMPKTKRTKTGYTT-DAEALAELFIKTEHPFLQHLLAYRDSTKLKQT 754908 ++ D +RT TG DA+AL + + P +L R + K K T Sbjct: 270 FGAKEERGVWTSRDGTILERTATGNPCLDADALRAM----KDPLAAAVLELRSNIKTKDT 325 Query: 754909 VVGLLKTVAED---GRIHTTYQQTVA-----ATGRLSSLDPNLQNIPVRTESGRRIREIF 755064 L K V E GR++ Q TGRLS P LQ IP R +RI I Sbjct: 326 F--LAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPALQQIPSRN---KRIAAII 380 Query: 755065 IADPHVDDARL-LTADYSQIEMRIMAHLSG--DAALIQAFKDGE--DLHSYVGSKVFGVG 755229 ++ +L L +D + E+RI AHL + A+ +A+ + DLH +VG + G+ Sbjct: 381 KPAFLPEEGQLWLDSDMASFEVRIFAHLVAAYNPAIARAYAENPELDLHQWVGD-LMGIP 439 Query: 755230 IDEVDSAMRSKVKAMSYGLVYGLSAYGLSRQLAIGVD-------------------EAKN 755352 + S ++ K M+ G+++ ++ L + + EAK Sbjct: 440 RNASYSG-QANAKQMNLGMIFNRGDGAVADSLGMPWEWCEFTDKKGDLIRYKKAGPEAKA 498 Query: 755353 LMEQYFERFGAVKDYLDEIVEQARANGYTETIMGRRRYLPALHSDRRQLRDMAERAALNA 755532 ++ Y + VK + A G+ +T GRR P + + A Sbjct: 499 VIAAYHTQIQGVKTLATRAQKIAEERGWIQTAHGRRLRFPNGYKSYK---------ASGI 549 Query: 755533 PIQGSAADIMKIAMLKVSDRLGDHKSTVLLQVHDEIIVDVHPEEIDSVTQIVTEEMGSAF 755712 IQ +AAD K L++ D LG S ++L HD + +D + + E + A Sbjct: 550 LIQATAADENKENWLRIEDALGSDGS-MILNTHDS-----YSMSVDENWKPIWERVKKAV 603 Query: 755713 E---LDVPLDVNV-GTGTSWHDA 755769 E L VPL + G G +W +A Sbjct: 604 ERQTLRVPLLLEFDGVGKNWAEA 626 >ref|NP_075491.1|phi PVL ORF 53 analogue Length = 175 Score = 82.0 bits (201), Expect = 1e-13 Identities = 58/172 (33%), Positives = 85/172 (49%), Gaps = 32/172 (18%) Frame = +2 Query: 585617 IDLKLLDAGITPPSYAHASDAGADLCSAIDFVLEPFERKVVPTGIAIALPIGTAGFVHPR 585796 + +KLL P H +DAG D+ SA VLEP E+ V+ T +A+++P G G + R Sbjct: 5 LQVKLLSENARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSR 64 Query: 585797 SGLSSKHGVTVINAPGTIDAGY-------------------------RGEIKVPLINLDA 585901 SG+SSK + + G IDAGY +GE++ +N Sbjct: 65 SGVSSKTHLVI--ETGKIDAGYHGNLGINIKNDAQVYLTTNEQCFDIQGEMENSFVNNAK 122 Query: 585902 RTPVRIS------RGDRIAQLVIQEIKQADFTLVESLDD-SDRGAGGFGSTG 586036 + P I+ +GD++AQLVI I + VE + S+RGA GFGS+G Sbjct: 123 KKPFTINDYYEIYKGDKLAQLVIVPIWTPELKQVEEFESVSERGAKGFGSSG 174 >ref|NP_944225.1|gp52 topoisomerase II medium subunit Length = 438 Score = 81.6 bits (200), Expect = 2e-13 Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 10/289 (3%) Frame = +3 Query: 1440336 RVIDVDVSSEMESSFLEYAVSVIHSRALPDARDGLKPVQRRIVYQMGDMGLRPERGHVKS 1440515 +VI +SS + + E+A+ I RALP DGLKPVQR I++ + R K+ Sbjct: 2 QVIKRGISSLVNNEAKEFAMYTIEERALPSMVDGLKPVQRYILFSVLK---NAGREFKKN 58 Query: 1440516 SRIVGDVMGKLHPHGDTAIYDALVRLSQSFIMRVPLVDGHGNFG--SLDDGPAAPRYTEA 1440689 + + G + + HG+ A DA ++ ++ P++ G GNFG ++ +G AA RY Sbjct: 59 AAVAGVISEYGYNHGEMAAMDAACLMASTWNNNFPVIQGRGNFGCRAVQEG-AAARY--- 114 Query: 1440690 RLTSASMQMIAGLDEDVVDFVGNYDNTLTQPEVLPSAFPNLLINGTSGIAVGMATNMAPH 1440869 + + + + +D+ + + P P +L+NG SGIA G AT + PH Sbjct: 115 -IFCSKHERFESMFKDMELLEESTADGSILPRYYLPILPTVLLNGVSGIATGFATKIMPH 173 Query: 1440870 NPGEVIAACCHLIRNPEAGLAELM--RFIPGPDLPTGGRIIGLDGVREAYET-GRGTFRT 1441040 + V ++++ + E+ +F G+I+ ++G ++++ G Sbjct: 174 SVQSVAKCVEQVLKSGKCDEPEIQFPKFF--------GKILSIEGETQSWKVEGDYELSG 225 Query: 1441041 RATVSIENINARRKGI-VVTELPYLVGPEKVV----SKVKDAVGAKKLT 1441172 + + I + + + VT L LV +K+V SK+KD K+T Sbjct: 226 KTKLIINELPPKYDRLKYVTHLNKLVETDKIVGYDESKMKDREFCFKVT 274 >ref|NP_046569.1|IMPB Length = 416 Score = 80.1 bits (196), Expect = 5e-13 Identities = 79/328 (24%), Positives = 139/328 (42%), Gaps = 12/328 (3%) Frame = +2 Query: 531458 PFAEVIPPSHGLYSSYSQKVFDLVAQVTPD--FQQVSVDEAYIDVSAAVRRLGSPVRITS 531631 P ++ P L+ S ++ L + P+ S+DE+++D P + Sbjct: 77 PRIHIVNPQMKLFIRVSTEITKLFYRFVPEKCVHTYSIDESFLDAGKE-----DPEEMAK 131 Query: 531632 QLRAEIEAQTGLSASVGIAGSRVVAKLA----STRAKPHGQLLVPLSATREFLDPMPIEA 531799 +++ + + GL +VGI + +++KLA S + K + P+ Sbjct: 132 AIQSSMWREFGLMCTVGIGDNMLLSKLALDLESKKTKSGIARWRYEDVPNKLWKVRPLSK 191 Query: 531800 LPGVGEKTKEGFFRYGIRLIGDLAAVDEAWAGRVFGAHGHHLWRSAHGLDSHGMDRQVKD 531979 + G+G + + R GI IG LA + FG G+ L+ AHG+D + + Sbjct: 192 MWGIGGRMERNLNRMGISTIGQLAKFPLELLEKKFGIMGNQLYYHAHGIDLSEIGAPLMQ 251 Query: 531980 RSIS--AEHTFNEDVWDLSQLEHELLRLADKVAHRVRADGKVATT--LGLKYRLADF-TT 532144 IS D +++ LL + ++VA R R KV T LG+ Y + Sbjct: 252 GQISFGKSQILLRDYTRSEEIKAVLLEICEEVARRARTHNKVGRTISLGIGYSKDELGGG 311 Query: 532145 LSRSITLDAPTDLAREIYEALRPAMRNLREQKSKGVRLLGVRAAGLMDFSASGRQVRLDE 532324 RS T+D PT + +IY M + K VR + V + + D +Q+ L E Sbjct: 312 FHRSKTIDLPTSITMDIYRCC--LMLFNKFYSGKTVRSVSVTLSNIED--DVNQQLSLFE 367 Query: 532325 AE-DSGREAEVALDDVRKKFGTAAISQA 532405 + + R+ +D +R K+G+ AI +A Sbjct: 368 VDNEKRRKLGFVMDGIRSKYGSKAILRA 395 >ref|NP_569784.1|hypothetical protein Length = 76 Score = 79.3 bits (194), Expect = 9e-13 Identities = 33/62 (53%), Positives = 46/62 (74%) Frame = -1 Query: 1418826 ALCAQTDPEAFFPEKGGSTREAKRVCASCDVRSDCLEYALANDERFGIWGGMSERERRRL 1418647 A+CAQTDPE +FP+KG STR+AKR+C C + +C AL + G+WGG+S +ERRR+ Sbjct: 11 AICAQTDPELWFPDKGQSTRDAKRMCMRCPLLDECRALALRDPHLVGVWGGLSAQERRRI 70 Query: 1418646 KK 1418641 +K Sbjct: 71 RK 72 Score = 47.0 bits (110), Expect = 0.005 Identities = 25/61 (40%), Positives = 33/61 (54%) Frame = +3 Query: 1373208 AACLNEDPELFFPIGNTGPALLQIEEAKTVCRRCEVVETCLQWALESGQDAGVWGGLSED 1373387 A C DPEL+FP + G + +AK +C RC +++ C AL GVWGGLS Sbjct: 11 AICAQTDPELWFP--DKGQST---RDAKRMCMRCPLLDECRALALRDPHLVGVWGGLSAQ 65 Query: 1373388 E 1373390 E Sbjct: 66 E 66 >ref|YP_195169.1|RecA-like recombination protein Length = 343 Score = 79.3 bits (194), Expect = 9e-13 Identities = 65/284 (22%), Positives = 131/284 (46%), Gaps = 16/284 (5%) Frame = +1 Query: 301720 IPTGSIALDIALG---IGGLPRGRVVEIYGPESSGKTTVALHAVANAQKTGGIAA--FID 301884 + TGS + + GG+P ++ + G +GKT L V N T A + + Sbjct: 32 VDTGSYIFNALVSGSIFGGIPSNKITALAGESGTGKTFFCLSVVRNFLNTDPDAGVIYFE 91 Query: 301885 AEHALDPEYAKKLGVDTDQLLVSQPDTGE----QALEIADMLIRSGALD----VIVIDSV 302040 E A+ + + G+D+ ++++ DT E QA+ I D + + + V+DS+ Sbjct: 92 TESAISKQMIESRGIDSTRMIIFPVDTIEDFRTQAVRIIDKYMEQNKSERKPLMFVLDSL 151 Query: 302041 AALVPKAEIEGEMGDSHVG--LQARLMSQALRKIAGALSQSKTTAIFINQLREKVGVFFG 302214 L K E+E D V +A+++ A R + + ++ + N + VG + Sbjct: 152 GMLATKKEVEDASNDKQVRDMTKAQIVKSAFRILTLKMGKANIPMLVTNHTYDVVGSYVP 211 Query: 302215 SPETTSGGKALKFYASVRIDVRRIETLKEGQDAVGNRTRAKIVKNKIAPPFKQAEFDIIY 302394 + E GG LK+ AS + + + + K+G D VGN + + K+++ + E + + Sbjct: 212 TKE-MGGGSGLKYSASTIVYLGK-KKEKDGTDLVGNIIKCEAKKSRLTREGSKVETRLFF 269 Query: 302395 GQ-GISREGSLIDMGVDNGIIRKSGSWFTYDGDQLGQGKENVRN 302523 Q G+ R ++++G G+ + + + +G ++ GK+ + N Sbjct: 270 DQRGLERYYGMLELGERAGLWKNTAGRYEINGKKV-YGKQILAN 312 >ref|NP_690785.1|site-specific recombinase for integration and excision Length = 474 Score = 79.3 bits (194), Expect = 9e-13 Identities = 75/305 (24%), Positives = 137/305 (44%), Gaps = 9/305 (2%) Frame = -2 Query: 1007126 VQLVSLRKTNEVAAYVRASMDRKG-DRWTVDTQLRKIRALAEAKDWNVVEVYEDNAVSAT 1006950 + L+ V YVR S + + + +++ Q K++A ++ W+ + Y D SA Sbjct: 1 MNLMDENTPKNVGIYVRVSTEEQAKEGYSISAQKEKLKAYCISQGWDSYKFYIDEGKSAK 60 Query: 1006949 KKRRAGTRWAEMLEDARAGRFSMVVAVDMDRLLRSTKDLNTLIDLGLRVVTV----DGEI 1006782 R ML G V+ +DRL RS +DL +L+D + V Sbjct: 61 DIHRPSLEL--MLRHIEQGIIDTVLVYRLDRLTRSVRDLYSLLDYFDKYQAVFRSATEVY 118 Query: 1006781 DLSTADGEFRATMLAALARFEARRKAERQIRSNERRRAEGIPTSAWKAFGWTRDGELI-- 1006608 D +A G T++AA+A++E ER ++ + +A SA FG+T++GE + Sbjct: 119 DTGSATGRLFITLVAAMAQWERENLGER-VKMGQVEKARQGQFSAPAPFGFTKEGESLVK 177 Query: 1006607 -PEEAEAIQRAFDAFLGEPSLSIRRIREDLNAAGHLTARGSEFSVDAVRYLLANP-LYAG 1006434 PEE E + D + S+R + + L+ + + RG ++ + ++ +L NP LY G Sbjct: 178 NPEEGEVLLDMIDKI--KKGYSLRELADYLDESDAIPKRGYKWHIASILVILKNPVLYGG 235 Query: 1006433 YIKHYASGELYPVQGDTFPPIVGEQTWRAAVAKLEDNVRRSARQGNQPKYLLSTIGLCGK 1006254 + +GE+ ++G F + ++ + L D + R+ ++ LC Sbjct: 236 F---RWAGEI--LEG-AFEGYISKKEFEQLQKMLHDR-QNFKRRETSSIFIFQAKILCPN 288 Query: 1006253 CGATL 1006239 CG+ L Sbjct: 289 CGSRL 293 Score = 45.4 bits (106), Expect = 0.014 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 11/136 (8%) Frame = +2 Query: 1044875 YARVSTRDQSTD---------RQQTDLLAAGVRRDDLYVDHGVSGARASRPEFNRALDAL 1045027 Y RVST +Q+ + + + ++ G Y+D G S RP L + Sbjct: 15 YVRVSTEEQAKEGYSISAQKEKLKAYCISQGWDSYKFYIDEGKSAKDIHRPSLELMLRHI 74 Query: 1045028 IDG--DTLVITTLDRLGRSTQNMLTFAEELRGRGAGLRVLNLGGGDVDTATPIGSMLFTI 1045201 G DT+++ LDRL RS +++ + + A V DT + G + T+ Sbjct: 75 EQGIIDTVLVYRLDRLTRSVRDLYSLLDYFDKYQA---VFRSATEVYDTGSATGRLFITL 131 Query: 1045202 MAALAQMEHEIKRERI 1045249 +AA+AQ E E ER+ Sbjct: 132 VAAMAQWERENLGERV 147 >ref|NP_932362.1|topoisomerase II large subunit Length = 607 Score = 79.3 bits (194), Expect = 9e-13 Identities = 93/379 (24%), Positives = 158/379 (41%), Gaps = 10/379 (2%) Frame = +3 Query: 572820 SFVNVVSTPHGGTHLAGFEQASLKAMRKAVEANARXXXXXXXXXXXXXVLAGLTAVVTVQ 572999 S+VN ++ +GG+H+ + + A++ + V LT VV V+ Sbjct: 265 SYVNGLNIKNGGSHIDYLVDGISEELMPAIKKKHKIEISKAR------VKECLTMVVVVR 318 Query: 573000 -LAEPQFEGQTKEVLGTAAVRQIVAKTVERQLGDILS----STKRAEKQ---QAAVLMEK 573155 ++ +F+ QTKE L A G++ S K+ KQ A+L Sbjct: 319 GMSNLRFDSQTKERLTNPA-------------GEVKSHFDLDFKKLSKQIMNTDAILQPI 365 Query: 573156 VVAELKSRISARTHKENQRRKTALEASSLP-AKLYDCRDNGVENTELFIVEGDSAMGTAK 573332 + A L ++A + +K A + + K + N +E T LF+ EG+SA+G Sbjct: 366 IEAALARHLAAEKAAMTKAQKAAAKTNCAKHIKAGEWGRNDIETT-LFLTEGESAIGYLL 424 Query: 573333 AARNSDHQALFPIRGKILNVQKASLSDMLANVECAALIQVIGAGSGRSFDIDAARYGRVI 573512 ++ + + +RGK++N SD+L N E + + + G DI +Y + Sbjct: 425 KVKDENLHGGYALRGKVMNTWGMKGSDVLKNNELSDICAITGLDLANPDDISQRKYKNIA 484 Query: 573513 IMTDADVDG-AHIRTLLLTLFFRYMKPLVEQGRVFAAVPPLHRVEVVTKRGTPNDVIYTY 573689 IMTDAD DG I LL F R+ K L ++G V P+ V+ +G YT Sbjct: 485 IMTDADPDGQGSIYPCLLAFFARWPK-LFDEGSVRFVKTPV----VILNKGKNTKWFYTL 539 Query: 573690 SXXXXXXXXXXXXXXXXXXXXPIQRYKGLGEMDADQLAETTMDPSMRTLRRVTMADAEAA 573869 + ++ KGLG + + ++ +P+ V + D Sbjct: 540 T--------EFEKEKKDYKGWDLRYIKGLGSLREHEYSDVVNNPNYDI---VDLGD--DW 586 Query: 573870 ENTFELLMGSSVGPRKEFI 573926 E FE+L+G RKE++ Sbjct: 587 EELFEMLLGDDAALRKEWM 605 Score = 51.6 bits (122), Expect = 2e-04 Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 23/148 (15%) Frame = +3 Query: 571896 VLSGLEAVRKRPGMYIGTTDSR-----------------GLMHCLWEIIDNAVDEALGG- 572021 VL+ E V RP MY+G+ GL+ + EIIDN+VDE + Sbjct: 7 VLTPREHVILRPNMYVGSVAYEPHERFLFGKFQSVSYVPGLVKIIDEIIDNSVDEGIRTD 66 Query: 572022 --FGKSILIELEP-DGSVAVTDSGRGIPVDI--EPKTGLTGVEVVLTKLHAGGKFGGSSY 572186 F I I + +GSV V D+GRGIP + P + T+ AG F ++ Sbjct: 67 FKFANKIDIRFDLLEGSVTVVDNGRGIPQSMVETPDGEMPKPVAAWTQTMAGSNFDDTN- 125 Query: 572187 AASGGLHGVGASVVNALSARLDVEVTRG 572270 S G++GVG+S+ N S + E G Sbjct: 126 RVSMGMNGVGSSLTNFFSKKFIGETCDG 153 >ref|NP_663636.1|unknown Length = 124 Score = 79.0 bits (193), Expect = 1e-12 Identities = 36/110 (32%), Positives = 68/110 (61%), Gaps = 1/110 (0%) Frame = +2 Query: 1556405 TSECPIPDDLGPVLVAGETPVAAYRTIRDSAIFTNKRLIIRDAQGLSGKKIEMYSIPYSS 1556584 T++ +++ P+ V GE+ + Y+ IRD +FT R+I + QG++GKK + S+PYS Sbjct: 15 TNDDAFVNNISPIFVKGESILGTYKGIRDGVVFTTHRIIAINVQGITGKKKDFTSLPYSK 74 Query: 1556585 INMWSSENSGKLDFNAELELW-TRAGHLKIKIGKGLDVRKLDNLIAQAVI 1556731 I +S E +G D ++ELELW + G +K++ +V ++ +I++ ++ Sbjct: 75 IQTFSIETAGTFDLDSELELWFSSLGKVKLEFSSRANVSEIAKIISERIL 124 >ref|NP_943888.1|hypothetical protein Length = 161 Score = 79.0 bits (193), Expect = 1e-12 Identities = 55/142 (38%), Positives = 77/142 (54%), Gaps = 14/142 (9%) Frame = +2 Query: 585653 PSYAHASDAGADLCSAI--DFVLEPFERKVVPTGI----------AIALPIGTAGFVHPR 585796 P++ A AG DL +AI VL+P E V+P+G+ ++ L IG G + PR Sbjct: 19 PAFKSAEAAGIDLRAAIAETVVLKPGEDIVIPSGLKMDIGALQLASVFLDIGVYGCILPR 78 Query: 585797 SGLSSKHGVTVINAPGTIDAGYRGEIKVPLINLDARTPVRISRGDRIAQLVIQ-EIKQAD 585973 SGL KH V + N G ID+ Y GEI + L N + + I GDR+ Q+V +K Sbjct: 79 SGLGFKHYVRLANTAGVIDSDYHGEIMIKLRN-EGTGDLTIVPGDRVVQMVFHLYVKGFG 137 Query: 585974 FTLVESLD-DSDRGAGGFGSTG 586036 F VES D +++RG G GS+G Sbjct: 138 FKEVESFDRNTERGESGIGSSG 159 >ref|NP_835555.1|hypothetical protein, similar to scaffolding protein Length = 245 Score = 78.6 bits (192), Expect = 1e-12 Identities = 46/155 (29%), Positives = 82/155 (52%) Frame = -1 Query: 1103145 NAICAQMMLLAAEDPDADISLYINSPGGSVTAGMAIYDTMQYIKPDVSTVAMGMAASMGQ 1102966 ++ C + +L E D D+ + INS GG++ AG IY ++ K V+ +AAS Sbjct: 24 DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 83 Query: 1102965 FLLSSGAPGKRYATPHARILMHQPLGGIGGTATDIKIQAELILHMKKQMAELTAEQTGKT 1102786 + +G + +P AR+++H P G A D+ AE + H+ + MAE A + GK Sbjct: 84 LIAMAGDHIEM--SPVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKN 141 Query: 1102785 LEQILKDNDRDHWFTAEEALEYGFIDKMVTRSSDV 1102681 +++++ R+ W A+EA+E GF D + + ++ Sbjct: 142 KQELVEMMARETWLNADEAIEQGFADSKMFENDNM 176 Score = 49.3 bits (116), Expect = 0.001 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 1/165 (0%) Frame = -3 Query: 1102522 DDRVIFLGVQVDDTSADDVMAQLLVLESQDPDRDITLYINSPGGSFTAMTAIYDTMQYIK 1102343 +D+ ++ + +D T DV+ QL + D D+ + INS GG+ A + IY ++ K Sbjct: 13 EDKWVYEMLGMDSTCPKDVLTQL-----EFSDEDVDIIINSNGGNLVAGSEIYTHLRAHK 67 Query: 1102342 PEIQTVCLGQXXXXXXXXXXAGTPGKRLAL-PNARVLIHQPAMEGQGQGQASDIEIQAAE 1102166 ++ G + + P AR++IH P+ QG+A D+ A Sbjct: 68 GKVNVRITA---IAASAASLIAMAGDHIEMSPVARMMIHNPS--SIAQGEAKDLNHAAET 122 Query: 1102165 VFRMRQWLETTLSDHSNKSPEQVSNDIERDLFLTAEQAKDYGLVD 1102031 + + Q + + + K+ +++ + R+ +L A++A + G D Sbjct: 123 LEHVGQIMAEAYAVRAGKNKQELVEMMARETWLNADEAIEQGFAD 167 >ref|NP_817502.1|gp53 Length = 293 Score = 78.6 bits (192), Expect = 1e-12 Identities = 73/274 (26%), Positives = 123/274 (44%), Gaps = 1/274 (0%) Frame = +3 Query: 221760 IAEVVSGYADHLRSRDVSAHTSRAYVADVSDFFDHTAHAPGAGDKSRAAELQVSDIDLND 221939 +AE+ + LR+ SA T RAY V + + E +++ ++ Sbjct: 6 LAELKDSWLMELRAARKSAETIRAYGGSVEGYLNF------------CVEGELAPLEKAS 53 Query: 221940 LRSWLITLDDAGAAKSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTPKKDSRLPTVLK 222119 L +W+ ++ A +TV ++ AVK F + ++ G++ + +R PK D ++ L Sbjct: 54 LLAWVNSM--ASLQPATVHLRLTAVKQFMRWVADEEGVNVDGLLVVRPPKLDQKVVKHLS 111 Query: 222120 PQQAADLVSRQRTVHTEADNSDPIEATKWVRDAAILEMLYATAVRVSELTGLNRGDVDHQ 222299 + LV+ T A N+ + RD A++ + T +R +E+ L+ DV Sbjct: 112 DRAVQALVA------TCAGNT-----FRDRRDKALIVLFTETGIRAAEMLALDVEDVSLV 160 Query: 222300 RSMITVL-GKGNKERRVPYGKPAQTALQKWLSLRDTFASESSGDALFLGVRGGRIGARQV 222476 +TV GKG K RRV Y + K+L R S G L++G+ GGR+ + Sbjct: 161 DCQLTVRRGKGAKGRRVKYSPMCAATIDKYLRARRRAGHGSEGP-LWIGL-GGRLSYTGM 218 Query: 222477 RELVHRYGAADPSAPDIGPHGLRHSAATHMLDGG 222578 + + R A D P PH LRH++A L G Sbjct: 219 KSSLKRR-ADDAGVPGFHPHRLRHTSAVRWLKAG 251 Score = 50.8 bits (120), Expect = 3e-04 Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 1/192 (0%) Frame = +3 Query: 488166 VSPPQEGLRLPKALSLDDIEAMLATTGGEEPAQIRAAALLELLYATGARISEAVGVDLDD 488345 V PP+ ++ K LS ++A++AT G R AL+ L TG R +E + +D++D Sbjct: 97 VRPPKLDQKVVKHLSDRAVQALVATCAGNTFRDRRDKALIVLFTETGIRAAEMLALDVED 156 Query: 488346 LDL-ETSLVRLYGKGGKERIVPFGSHAATALGAWVSRTRPXXXXXXXXXXXXXXLFLNAR 488522 + L + L GKG K R V + A + ++ R L++ Sbjct: 157 VSLVDCQLTVRRGKGAKGRRVKYSPMCAATIDKYLRARR------RAGHGSEGPLWIGLG 210 Query: 488523 GTRLSRQTAWQIVKDAGELAGLEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHASVTT 488702 G RLS +K + AG+ PH RH+ A L+ G + G S Sbjct: 211 G-RLSYTGMKSSLKRRADDAGVPG-FHPHRLRHTSAVRWLKAGGSEAGLMAQAGWQSRRQ 268 Query: 488703 TQIYTKVSEETL 488738 Y K + E L Sbjct: 269 IDRYIKSAAEEL 280 >ref|NP_817637.1|gp48 Length = 235 Score = 78.6 bits (192), Expect = 1e-12 Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 8/210 (3%) Frame = +3 Query: 156747 AEDLLEFSGRMCYRSWE---PGLNPNVSRVRTDSAQYLGNVIASQHGSVLEHANFTFVLH 156917 A++L EF+GR CYRS+ PG NV YL +++ H SVLEHA+ TF + Sbjct: 30 ADELAEFAGRNCYRSFSRPNPGTRENVD--------YLKHILDVGHESVLEHASATFYIE 81 Query: 156918 NVSRVLTHELIRHRAGSAFSQESLRYVRLADIPFWFPEWAREDSELMERS-LKVLDTLEE 157094 VLT EL RHR S FS S RYV ++ P ++ + R + + LEE Sbjct: 82 ASRSVLT-ELERHRHLS-FSVVSQRYVDPTELGVHEPPAVKDLIDAPGRGYFRAKELLEE 139 Query: 157095 HQKWMTEHFELDEASTKFSH----KKHMTSFMRRFAPEGLATGIVYTANLRSLRHVIEMR 157262 Q E + DE T ++ +K R P + +V T N R+ R+VI+ R Sbjct: 140 IQHASAEAY--DELVTIYAEAGLGRKKAREAARAVLPNMTNSPMVVTGNHRAWRYVIKAR 197 Query: 157263 TAKGAEEEIRLVFNKIGEAMREEAPAIFSD 157352 + A+ EIR + ++ +RE AP + D Sbjct: 198 WHEAADAEIRSLAGELLRQLREIAPHTYQD 227 >ref|NP_861694.1|gp60plus39 large subunit topoisomerase II Length = 606 Score = 78.6 bits (192), Expect = 1e-12 Identities = 82/315 (26%), Positives = 132/315 (41%), Gaps = 6/315 (1%) Frame = +3 Query: 573000 LAEPQFEGQTKEVLGTAA--VR---QIVAKTVERQLGDILSSTKRAEKQQAAVLMEKVVA 573164 ++ +F+ QTKE L + +R Q+ AK + + L + A++M V A Sbjct: 323 MSNMRFDSQTKERLTSTYGDIRNHIQLDAKKIAQAL-----------LKNEALIMPIVEA 371 Query: 573165 ELKSRISARTHKENQRRKTALEAS-SLPAKLYDCRDNGVENTELFIVEGDSAMGTAKAAR 573341 L +++A E + K A +A K C + +T LF+ EGDSA+G R Sbjct: 372 ALARKLAAEKAAETKAAKKATKAKVHKHIKANQCGKDA--DTTLFLTEGDSAIGYLIDVR 429 Query: 573342 NSDHQALFPIRGKILNVQKASLSDMLANVECAALIQVIGAGSGRSFDIDAARYGRVIIMT 573521 + + FP+RGK++N S +DM+ N E + + G G + Y + IMT Sbjct: 430 DRELHGGFPLRGKVMNSWGMSYADMMKNKELFDICAITGLILGEK--AENTNYRNIAIMT 487 Query: 573522 DADVDGAHIRTLLLTLFFRYMKPLVEQGRVFAAVPPLHRVEVVTKRGTPNDVIYTYSXXX 573701 DAD DG L FF L EQGR+ P+ ++ + G YT + Sbjct: 488 DADHDGLGSIYPALLAFFSNWPELFEQGRIRFVKTPV----IIAQIGKTQKWFYTVA--- 540 Query: 573702 XXXXXXXXXXXXXXXXXPIQRYKGLGEMDADQLAETTMDPSMRTLRRVTMADAEAAENTF 573881 I+ KGLG ++ + + +P ++ E + F Sbjct: 541 -----EYEEAKDTLPKHSIRYIKGLGSLEKSEYRKMIQNPVYDVVKL-----PENWKELF 590 Query: 573882 ELLMGSSVGPRKEFI 573926 E+LMG RKE++ Sbjct: 591 EMLMGDDSELRKEWM 605 Score = 58.5 bits (140), Expect = 2e-06 Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 6/99 (6%) Frame = +3 Query: 571962 GLMHCLWEIIDNAVDEALGG---FGKSILIELEPDGSVAVTDSGRGIPVD-IEPKTG--L 572123 GL+ + EIIDN+VDEA+ F I ++++ + V+V D+GRGIP + +TG + Sbjct: 48 GLVKLIDEIIDNSVDEAIRTSFKFANKIDVQIK-NNQVSVEDNGRGIPQGLVTDQTGEQI 106 Query: 572124 TGVEVVLTKLHAGGKFGGSSYAASGGLHGVGASVVNALS 572240 G T AGG FG S +GG++GVG+S+ N S Sbjct: 107 PGPVAAWTIPKAGGNFGDDSERKTGGMNGVGSSLTNIFS 145 >ref|YP_195193.1|hypothetical protein Length = 120 Score = 78.6 bits (192), Expect = 1e-12 Identities = 37/74 (50%), Positives = 52/74 (70%) Frame = +2 Query: 875873 SGTCPMSYYGGGDGFDGRPTANGEIFDTNKLTAAHKTLPFGSQVKITNTANGKSVTVRIN 876052 SG S+YG GDG+ G+ TANGE ++ + AH+ LPFG+++++TN GKSV VR+N Sbjct: 25 SGCSLASHYGIGDGYHGQRTANGERYNAYGKSVAHRYLPFGTRLRVTNQRTGKSVIVRVN 84 Query: 876053 DRGPHHGSRCIDLS 876094 DRGP+ R +DLS Sbjct: 85 DRGPYVYDRDLDLS 98 >ref|NP_047961.1|gp16 Length = 237 Score = 78.6 bits (192), Expect = 1e-12 Identities = 65/208 (31%), Positives = 98/208 (47%), Gaps = 5/208 (2%) Frame = +3 Query: 156744 DAEDLLEFSGRMCYRSWEPGLNPNVSRVRTDSAQYLGNVIASQHGSVLEHANFTFVLHNV 156923 DA+ L E +GR+CY+S+E NP + + YLGN++A H SVLEHA+ TF++ +V Sbjct: 36 DADALGEAAGRICYKSFERK-NPATA----SNPGYLGNILAQGHFSVLEHASVTFLVRDV 90 Query: 156924 SRVLTHELIRHRAGSAFSQESLRYVRLADIPFWFPEWAREDSELMERSLKVLDTLEEHQK 157103 SR L EL RHR S FS S RYV AD ++ +++ + + ++ Sbjct: 91 SRALLTELSRHRHLS-FSVVSQRYVDHAD-----------TEPVVPPAIRGTELEKPFRE 138 Query: 157104 WMTEHFELDEASTKFSH-----KKHMTSFMRRFAPEGLATGIVYTANLRSLRHVIEMRTA 157268 E + +A K +K R P +V T NLR+ R V+ R Sbjct: 139 DYAEALQAYDAGVKLLRARGYGRKQAREAARALLPNAAPVDMVVTGNLRAWRDVLGKRWH 198 Query: 157269 KGAEEEIRLVFNKIGEAMREEAPAIFSD 157352 A+ EIR ++ + + AP D Sbjct: 199 VAADAEIREFAGRVLDHLHAVAPNSVQD 226 >ref|NP_445672.1|putative helicase Length = 601 Score = 78.2 bits (191), Expect = 2e-12 Identities = 54/205 (26%), Positives = 105/205 (51%), Gaps = 11/205 (5%) Frame = +2 Query: 861827 RMEFELDDFQLEACAQ-LQDGKDVLVTAPTGAGKTLIAEFAVELARDEGKRVFYTTPIKA 862003 +M +L++FQ +A L K++L+TAPTG GK+ + A+ +A + RV YT P++A Sbjct: 3 KMSIQLNEFQKKALQSFLMSDKNLLITAPTGTGKSFL---AMLMAMETKSRVVYTVPLRA 59 Query: 862004 LSNQKFNDLMD-----VHGVENVGLLTGDT----SIRRDAPIIVMTTEVLRNMLYNDVAG 862156 L+ Q +D + V+G + LT + + +I T E + Sbjct: 60 LALQLNDDFHNKVAPLVNGYADSVALTSEVYEEDPENLEERVIFTTYEKADAIFRRHYPW 119 Query: 862157 LSDLGFVVLDEVHYLADRFRGPVWEEVIIH-LPDRVQMVSLSATVSNVEEFGAWLSEVRG 862333 + +++DE+H + D+ RG E +I + + + +++V++SAT+ +V + + Sbjct: 120 TDRIETLIIDEIHNIGDKERGKAIENLIAYAMNEGIRIVAMSATIPDVNKIAEIID---- 175 Query: 862334 PTTVVSTSHRPVPLVNHVLVGHRMY 862408 ++ T RP+PL V +G+++Y Sbjct: 176 -AEIIKTDERPIPLYKAVKIGNKLY 199 Score = 68.2 bits (165), Expect = 2e-09 Identities = 87/384 (22%), Positives = 158/384 (41%), Gaps = 33/384 (8%) Frame = +3 Query: 765363 ELGIEPYPAQDEAILNILAGD-NTIVATPTGSGKSLVALFALYQSFTRGIRAYYTAPLKA 765539 ++ I+ Q +A+ + L D N ++ PTG+GKS +A+ ++ +R + YT PL+A Sbjct: 3 KMSIQLNEFQKKALQSFLMSDKNLLITAPTGTGKSFLAMLMAMETKSRVV---YTVPLRA 59 Query: 765540 LVSE-------KFFSLIDAFGAENVGM---ITGDSTVNGDAPVICATAEILANQALREGG 765689 L + K L++ + A++V + + + N + VI T E R Sbjct: 60 LALQLNDDFHNKVAPLVNGY-ADSVALTSEVYEEDPENLEERVIFTTYEKADAIFRRHYP 118 Query: 765690 LVD-AGMVVMDEFHYVADPSRGWAWQ--VPLLEMPQAQFVLMSATLGDTSEICRTMEDTT 765860 D +++DE H + D RG A + + + V MSAT+ D ++I + Sbjct: 119 WTDRIETLIIDEIHNIGDKERGKAIENLIAYAMNEGIRIVAMSATIPDVNKIAEII---- 174 Query: 765861 GRDSSVVTSATRPVPLDYEYS------------TETLSDTLRSLVRNDKAPVYVVSYSQA 766004 D+ ++ + RP+PL E D ++ +VR +K V + + ++ Sbjct: 175 --DAEIIKTDERPIPLYKAVKIGNKLYFEDGDVIELKEDFIKKMVRKNKV-VMIFTSTRK 231 Query: 766005 GAIDLATGLLSVDLASKEQXXXXXXXXXXXXXXXXXXQSLRKLLLHGVGVHHAGMLPKYR 766184 A +L + + V HAG+ + + Sbjct: 232 KAEEL-------------------------------YMIYDRKFQNKVAFFHAGLDAETK 260 Query: 766185 RLVEQLALKGLLLVISGTDTLGVGINVPIRSVLLTGLT-------KFDGRKMRKLSVREF 766343 + + +G +I T L G+N P +V+ L +F G K +++ EF Sbjct: 261 LRLLEETRQGKYNIIVSTTALSQGVNFPFYAVVFDDLKLPIIEYGRFTGWK--QITPIEF 318 Query: 766344 QQLAGRAGRAGFDTRGYVIAQAPE 766415 Q+ GRAGR G+D G I +A + Sbjct: 319 DQICGRAGRPGYDEEGLCIIEATD 342 Score = 51.6 bits (122), Expect = 2e-04 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 7/145 (4%) Frame = +2 Query: 862772 VAAHHAGMIPQFKQLVEELFSQGIIKVVFATETLALGINMPARTVVLEKLV-------KF 862930 VA HAG+ + K + E QG ++ +T L+ G+N P VV + L +F Sbjct: 248 VAFFHAGLDAETKLRLLEETRQGKYNIIVSTTALSQGVNFPFYAVVFDDLKLPIIEYGRF 307 Query: 862931 NGEAHVSITPGEYTQLTGRAGRRGIDQIGHAVVIWHPSFEVNEIAGLASNRSYALNSAFG 863110 G ITP E+ Q+ GRAGR G D+ G ++ + ++ N SY + Sbjct: 308 TG--WKQITPIEFDQICGRAGRPGYDEEGLCIIEATDIRQAEKLKRTYFNTSYGTITGHH 365 Query: 863111 PTYNMTANLLSRMSSAEAAKVLETS 863185 + L+S+ A+ +++E + Sbjct: 366 VLEDFLLALISKYIYAKPDRIMEAT 390 >ref|NP_891840.1|topoisomerase medium subunit Length = 454 Score = 78.2 bits (191), Expect = 2e-12 Identities = 100/366 (27%), Positives = 158/366 (43%), Gaps = 8/366 (2%) Frame = +3 Query: 1440384 EYAVSVIHSRALPDARDGLKPVQRRIVYQMGDMGLRPERGHVKSSRIVGDVMGKL----H 1440551 EYA+ R +P DGLKPVQR ++ + L+ +G K R + D+ + + Sbjct: 26 EYAIYSAEERGIPQLVDGLKPVQRFVM----ECALQKSKGDRKKFRKMADIGSGVAELGY 81 Query: 1440552 PHGDTAIYDALVRLSQSFIMRVPLVDGHGNFGS-LDDGPAAPRYTEARLTSASMQMIAGL 1440728 HG+T +A ++ ++ PL+DG GNFGS L A RY AR+ ++ Sbjct: 82 HHGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYIFARVHENFFKIY--- 138 Query: 1440729 DEDVVDFVGNYDNTLTQPEVLPSAFPNLLINGTSGIAVGMATNMAPHNPGEVIAACCHLI 1440908 +D+ + D P P +L NG SGIA G T++ PH+ LI Sbjct: 139 -KDMNCAPKHEDLEHIPPAFYLPVVPMVLANGISGIATGYKTDILPHSLES-------LI 190 Query: 1440909 RNPEAGLAELMRFIPGPDLPT-GGRIIGLDGVREAYETGRGTFRTRATVSIENINARRKG 1441085 E LA + P P G++I D R+ GT+ +N + K Sbjct: 191 ECTELALAGKLDKEPSVQFPKFTGKVIPRDD-RDGVIL-EGTY---------ELNGKTK- 238 Query: 1441086 IVVTELPYLVGPEKVVSKVKDAVGAKKLTGIASIDDYSDR--KNGMRLVIGIKNGFNPEA 1441259 + ++E+PY E+ V+ V DA+ K L I Y+DR K+G R + +K + Sbjct: 239 LTISEVPYKFDREEYVA-VLDALEEKDL-----IVSYNDRCSKDGFRFEVTLKRDYFKSE 292 Query: 1441260 VLAELYRQTPLEESFSMNNVCLVDGQPRTLGLRELLTVYLAHRIDVIRRRTVFQLRKAKD 1441439 E R + + F + LV + R L+ V+ D+IRR +L Sbjct: 293 --DESARHEQIMKDFKLTQ--LVAQNIVVVNERGLVEVF-EKASDLIRRFVEIRLGYVDK 347 Query: 1441440 RLHLVE 1441457 R+ L++ Sbjct: 348 RIELMQ 353 >ref|NP_061531.1|integrase Length = 369 Score = 77.4 bits (189), Expect = 3e-12 Identities = 77/319 (24%), Positives = 133/319 (41%), Gaps = 9/319 (2%) Frame = +3 Query: 221742 VTLPTTIAEVVSGYADHLRSRDVSAHTSRAYVADVSDFFDHTAHAPGAGDKSRAAELQVS 221921 V P T EV+ Y H R S T+ + + ++F A V+ Sbjct: 54 VNPPRTFEEVIIPYLQHARQHQRSYETTVHRIKPLREYF---------------AGRVVN 98 Query: 221922 DIDLNDLRSWLITLDDAGAAKSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTPKKDSR 222101 D+ D+R + DAGA+ +T+ R++AA+ + +C + + Sbjct: 99 DLGGQDIRGYGAHRLDAGASPATINRELAALSAAINHC---------------NTELEWA 143 Query: 222102 LPTVLKPQQAADLVSRQRTVHTEADNSDPIEATKWVRDAAILEMLYATAV----RVSELT 222269 LP +K ++ + R R + T A+ A + + +LE AV R E+ Sbjct: 144 LPNPVKGRKMREAEGRDRWL-TRAEVEALCRAARGQKFGPMLEDFIRLAVNTGCRREEML 202 Query: 222270 GLNRGDVDHQRSMITVLG---KGNKERRVPYGKPAQTALQKWLSLRDTFASESSGDA--L 222434 GL VD +I + K K R +P + A AL++ R F SE+S + + Sbjct: 203 GLEWRRVDFANRLIYLEASHTKAGKRRSIPINEGAMAALKR----RMAFRSETSPECPWV 258 Query: 222435 FLGVRGGRIGARQVRELVHRYGAADPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGH 222614 F G R+ + + D H LRH+ A ++ G L +++LLGH Sbjct: 259 FARANGDRVISLSAG---FKQACQAAKIADFTIHDLRHTCAAWLVSAGVPLADVRDLLGH 315 Query: 222615 STMSSTQIYTHVSMQRLQE 222671 ST++ T+ Y H++ R+++ Sbjct: 316 STVAMTERYAHLAPARVRD 334 Score = 53.1 bits (126), Expect = 7e-05 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 6/186 (3%) Frame = +3 Query: 488205 LSLDDIEAMLATTGGEEPAQIRAAALLELLYATGARISEAVGVDLDDLDLETSLVRL--- 488375 L+ ++EA+ G++ + + L TG R E +G++ +D L+ L Sbjct: 163 LTRAEVEALCRAARGQKFGPM-LEDFIRLAVNTGCRREEMLGLEWRRVDFANRLIYLEAS 221 Query: 488376 YGKGGKERIVPFGSHAATALG---AWVSRTRPXXXXXXXXXXXXXXLFLNARGTRLSRQT 488546 + K GK R +P A AL A+ S T P +F A G R+ + Sbjct: 222 HTKAGKRRSIPINEGAMAALKRRMAFRSETSPECPW----------VFARANGDRVISLS 271 Query: 488547 AWQIVKDAGELAGLEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTKVS 488726 A K A + A + A+ + H RH+ A L+ G + V++LLGH++V T+ Y ++ Sbjct: 272 AG--FKQACQAAKI-ADFTIHDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTERYAHLA 328 Query: 488727 EETLRE 488744 +R+ Sbjct: 329 PARVRD 334 >ref|NP_817552.1|gp103 Length = 286 Score = 77.4 bits (189), Expect = 3e-12 Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 16/170 (9%) Frame = -1 Query: 1103163 VRDSNANAICAQMMLLAAEDPDADISLYINSPGGSVTAGM------AIYDTMQYIKPD-- 1103008 V D + A Q+ L EDP+ D+ + +NSPGGSV AGM A Y T + D Sbjct: 118 VNDYSVEACLNQLALWHREDPNCDMHIVMNSPGGSVIAGMHLFDQIAAYSTRPWDTSDRP 177 Query: 1103007 -----VSTVAMGMAASMGQFLLSSGAPGKRYATPHARILMHQPLGGIGGTATDIKIQAEL 1102843 + GMAASMG LL S +R P A +++H+ G GG +I+ Sbjct: 178 KGTHKTTMTVRGMAASMGGILLQS--VDERIIGPEAYLMIHEISAGTGGKIGEIEDMVGW 235 Query: 1102842 ILHMKKQMAELTAEQTGK--TLEQILKDNDR-DHWFTAEEALEYGFIDKM 1102702 H+ ++A++ + G T E+ R D W ++EAL YGF+D++ Sbjct: 236 YRHLCARIAKVFVHRAGGKITAEEFDAGWKRTDWWLDSDEALRYGFVDRI 285 >ref|NP_039712.1|predicted 27.8Kd protein Length = 243 Score = 77.0 bits (188), Expect = 4e-12 Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 8/211 (3%) Frame = +3 Query: 156744 DAEDLLEFSGRMCYRSWEPGLNPNVSRVRTDSAQYLGNVIASQHGSVLEHANFTFVLHNV 156923 DA++L EF+GR CYRS+ PN + ++ YL ++I H SV EHA+ TF + Sbjct: 40 DADELAEFAGRNCYRSFH---RPNPA--TAENEDYLNHIIDLGHESVFEHASATFYIEAS 94 Query: 156924 SRVLTHELIRHRAGSAFSQESLRYVRLADIPFWFPEWA-------RED-SELMERSLKVL 157079 VLT EL RHR S FS S RYV D+ P R+D +ME + Sbjct: 95 RSVLT-ELERHRHLS-FSVVSQRYVDPTDLGIHLPPALFKLHPDDRDDLVHIMESVSSEI 152 Query: 157080 DTLEEHQKWMTEHFELDEASTKFSHKKHMTSFMRRFAPEGLATGIVYTANLRSLRHVIEM 157259 D + EH ++ + + +K R P + +V T N R+ R+VI+ Sbjct: 153 DAVYEH--------IVNRLADRGLPRKQAREAARAVLPNMTNSPMVVTGNHRAWRYVIKA 204 Query: 157260 RTAKGAEEEIRLVFNKIGEAMREEAPAIFSD 157352 R + A+ EIR + ++ +R+ AP + D Sbjct: 205 RWHEAADAEIRELAGELLRQLRQIAPNTYQD 235 >ref|NP_932596.1|topoisomerase II medium subunit Length = 555 Score = 77.0 bits (188), Expect = 4e-12 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 6/170 (3%) Frame = +3 Query: 1440381 LEYAVSVIHSRALPDARDGLKPVQRRIVYQMGDMGLRPERGHVKSSRIVGDVMGKLHPHG 1440560 LE+A+ + RA+P DGLKPVQR +Y+ + + K + + G V + HG Sbjct: 124 LEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQNRSKFNKVAALAGGVSEAGYHHG 183 Query: 1440561 DTAIYDALVRLSQSFIMRVPLVDGHGNFGS-LDDGPAAPRYTEARLTSASMQMIAGLDED 1440737 + + A ++ ++ +P+++G GNFGS + AAPRY R+ + ++ Sbjct: 184 EGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAAPRYVFCRVHQNFWDIYRDIELA 243 Query: 1440738 VVDFVGNYDNTLTQPEVLPSAF-----PNLLINGTSGIAVGMATNMAPHN 1440872 V +PE LP + P +L NG GIA G ATN+ PH+ Sbjct: 244 PVH---------PEPEHLPPRYYLPVIPMVLANGVKGIATGYATNIFPHS 284 >ref|NP_958716.1|Bbp47 Length = 464 Score = 76.6 bits (187), Expect = 6e-12 Identities = 110/446 (24%), Positives = 188/446 (42%), Gaps = 32/446 (7%) Frame = -2 Query: 324239 MGLGKTLQALSLFTHIKNTTANASPILVVAPTSVM-STWRAEAEKFAP--GLRVTTISAT 324069 MG+GKT+ AL+ ++ P LV+AP V STW E+ K+A + V+ + T Sbjct: 31 MGMGKTVSALTALDILE--LVEPGPSLVLAPLRVAASTWPDESTKWAHLRNVEVSAVVGT 88 Query: 324068 EKKRKTALALEIEDADLVITSYAILRL------DAQAFRSIQWDTFVLDEAQFVKNRTAK 323907 ++R+ AL A++ T+Y L D FR + D ++ ++ + Sbjct: 89 PEQRRAALK---RPANVFTTNYDNLPWLIEHLGDRWPFRKVVADESTKLKSFRLQQGGKR 145 Query: 323906 VHTAAKGIQARFR--LAITGTPMENSLTDLWSLYSITSPG--LLPGIEKFRREIVLPIES 323739 H + A+ + +TGTP N L DLW G L F+ I+ Sbjct: 146 AHALGRVAHAKVDRFIELTGTPSPNGLQDLWGQAWFLDKGERLGRSFGAFKSRWFQSIQV 205 Query: 323738 GESP-----EGMALLRRRIRPFMKRRNKELVAADLPPKQEQILS---VELSSKHRDLYNT 323583 G E + +++I ++ L A D E I++ VEL +K R LY Sbjct: 206 GSDRHAVRLEPLPFAQQQIEDRLRDLCLSLDARDYFDISEPIVNVVRVELPAKARRLYRD 265 Query: 323582 VLQKERKKLLGLINDMDRNRF-AIFRSLTLLRMLAIDPYLID--EKYEAIGSSKLSALFS 323412 + ER+ L L ++ F A +++ L++ Y D + + KL A Sbjct: 266 M---EREAFLALECGIEIEAFNAASKTIKCLQLANGAIYTDDTATTWADVHDVKLQA--- 319 Query: 323411 HLDDIIAE--GHRTIIFSQFTSFLSRVGEQLDHRNINYCYLDGSTRNRGAVIDDFRAGEA 323238 L+ I+AE G ++ F S L+R+ LD + + I D+ AG+ Sbjct: 320 -LESIVAEAAGMPVLVAYHFKSDLARLQRAFPQGRA----LDQNPQ----TIRDWNAGKI 370 Query: 323237 PIFLISLKAGGFGLTLTEADYVF-LLDPWWNPAVEAQAVD-----RAHRIGQTKNVMVYR 323076 P+ + G GL L + + WW+ Q ++ R + G + V +Y Sbjct: 371 PLLFAHPASAGHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHDRPVFIYH 430 Query: 323075 MVSEKTIEEKVLALQERKAQLFDSLV 322998 +V+ T++E V+A +E K ++ D L+ Sbjct: 431 IVATDTMDELVMARRESKREVQDLLL 456 Score = 61.2 bits (147), Expect = 2e-07 Identities = 109/431 (25%), Positives = 175/431 (40%), Gaps = 35/431 (8%) Frame = +3 Query: 367692 PTLLLCPMSLIGN-WEAEVARFAP--SLRILVYYGSARPRGDAFDAALAESDLVITT-YA 367859 P+L+L P+ + + W E ++A ++ + G+ R AAL V TT Y Sbjct: 53 PSLVLAPLRVAASTWPDESTKWAHLRNVEVSAVVGTPEQRR----AALKRPANVFTTNYD 108 Query: 367860 TASRDIAEL-ERIGWVRVVLDEAQVIKN-RLSQTTKAIRRLNG------GQKIALTGTPV 368015 I L +R + +VV DE+ +K+ RL Q K L + I LTGTP Sbjct: 109 NLPWLIEHLGDRWPFRKVVADESTKLKSFRLQQGGKRAHALGRVAHAKVDRFIELTGTPS 168 Query: 368016 ENRLSELWSIMDFVNPG-MLGTP-EKFRERFVRPIEVRADEERAHRLRRITRPYILRRTK 368189 N L +LW F++ G LG F+ R+ + I+V +D H +R P+ ++ + Sbjct: 169 PNGLQDLWGQAWFLDKGERLGRSFGAFKSRWFQSIQVGSDR---HAVRLEPLPFAQQQIE 225 Query: 368190 ---------TDPRIIDDLPEKIEIKQHYRLTVEQASLYQSVVAEMMGRIEESSGIERRGL 368342 D R D+ E I L + LY+ + E +E GIE Sbjct: 226 DRLRDLCLSLDARDYFDISEPIVNVVRVELPAKARRLYRDMEREAFLALE--CGIEIEAF 283 Query: 368343 VLAAMT-KLKQVCNHPAHLLHDGSAIGQ-RSGKLERFEEIMSETLAEGDRVLCFTQFTDF 368516 A+ T K Q+ N + + KL+ E I++E A G VL Sbjct: 284 NAASKTIKCLQLANGAIYTDDTATTWADVHDVKLQALESIVAE--AAGMPVL-------- 333 Query: 368517 GEMLVPHLAAKFDTDVAYLAGSTSKQR----RTQIVKDFQEPDGPKIFVLSLKAGGTGLN 368684 +A F +D+A L + + R Q ++D+ P +F A G GLN Sbjct: 334 -------VAYHFKSDLARLQRAFPQGRALDQNPQTIRDWNAGKIPLLFAHPASA-GHGLN 385 Query: 368685 L-TAANQVVHLDRWWN-----PAVENQATDRAFRIGQKRRVQVRKFIGIGTLEERIDAIL 368846 L N + WW+ +E R + G R V + + T++E + A Sbjct: 386 LQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHDRPVFIYHIVATDTMDELVMARR 445 Query: 368847 EEKKELADMVV 368879 E K+E+ D+++ Sbjct: 446 ESKREVQDLLL 456 >ref|NP_996608.1|DEAD box helicase Length = 464 Score = 76.6 bits (187), Expect = 6e-12 Identities = 110/446 (24%), Positives = 188/446 (42%), Gaps = 32/446 (7%) Frame = -2 Query: 324239 MGLGKTLQALSLFTHIKNTTANASPILVVAPTSVM-STWRAEAEKFAP--GLRVTTISAT 324069 MG+GKT+ AL+ ++ P LV+AP V STW E+ K+A + V+ + T Sbjct: 31 MGMGKTVSALTALDILE--LVEPGPSLVLAPLRVAASTWPDESTKWAHLRNVEVSAVVGT 88 Query: 324068 EKKRKTALALEIEDADLVITSYAILRL------DAQAFRSIQWDTFVLDEAQFVKNRTAK 323907 ++R+ AL A++ T+Y L D FR + D ++ ++ + Sbjct: 89 PEQRRAALK---RPANVFTTNYDNLPWLIEHLGDRWPFRKVVADESTKLKSFRLQQGGKR 145 Query: 323906 VHTAAKGIQARFR--LAITGTPMENSLTDLWSLYSITSPG--LLPGIEKFRREIVLPIES 323739 H + A+ + +TGTP N L DLW G L F+ I+ Sbjct: 146 AHALGRVAHAKVDRFIELTGTPSPNGLQDLWGQAWFLDKGERLGRSFGAFKSRWFQSIQV 205 Query: 323738 GESP-----EGMALLRRRIRPFMKRRNKELVAADLPPKQEQILS---VELSSKHRDLYNT 323583 G E + +++I ++ L A D E I++ VEL +K R LY Sbjct: 206 GSDRHAVRLEPLPFAQQQIEDRLRDLCLSLDARDYFDISEPIVNVVRVELPAKARRLYRD 265 Query: 323582 VLQKERKKLLGLINDMDRNRF-AIFRSLTLLRMLAIDPYLID--EKYEAIGSSKLSALFS 323412 + ER+ L L ++ F A +++ L++ Y D + + KL A Sbjct: 266 M---EREAFLALECGIEIEAFNAASKTIKCLQLANGAIYTDDTATTWADVHDVKLQA--- 319 Query: 323411 HLDDIIAE--GHRTIIFSQFTSFLSRVGEQLDHRNINYCYLDGSTRNRGAVIDDFRAGEA 323238 L+ I+AE G ++ F S L+R+ LD + + I D+ AG+ Sbjct: 320 -LESIVAEAAGMPVLVAYHFKSDLARLQRAFPQGRA----LDQNPQ----TIRDWNAGKI 370 Query: 323237 PIFLISLKAGGFGLTLTEADYVF-LLDPWWNPAVEAQAVD-----RAHRIGQTKNVMVYR 323076 P+ + G GL L + + WW+ Q ++ R + G + V +Y Sbjct: 371 PLLFAHPASAGHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHDRPVFIYH 430 Query: 323075 MVSEKTIEEKVLALQERKAQLFDSLV 322998 +V+ T++E V+A +E K ++ D L+ Sbjct: 431 IVATDTMDELVMARRESKREVQDLLL 456 Score = 61.2 bits (147), Expect = 2e-07 Identities = 109/431 (25%), Positives = 175/431 (40%), Gaps = 35/431 (8%) Frame = +3 Query: 367692 PTLLLCPMSLIGN-WEAEVARFAP--SLRILVYYGSARPRGDAFDAALAESDLVITT-YA 367859 P+L+L P+ + + W E ++A ++ + G+ R AAL V TT Y Sbjct: 53 PSLVLAPLRVAASTWPDESTKWAHLRNVEVSAVVGTPEQRR----AALKRPANVFTTNYD 108 Query: 367860 TASRDIAEL-ERIGWVRVVLDEAQVIKN-RLSQTTKAIRRLNG------GQKIALTGTPV 368015 I L +R + +VV DE+ +K+ RL Q K L + I LTGTP Sbjct: 109 NLPWLIEHLGDRWPFRKVVADESTKLKSFRLQQGGKRAHALGRVAHAKVDRFIELTGTPS 168 Query: 368016 ENRLSELWSIMDFVNPG-MLGTP-EKFRERFVRPIEVRADEERAHRLRRITRPYILRRTK 368189 N L +LW F++ G LG F+ R+ + I+V +D H +R P+ ++ + Sbjct: 169 PNGLQDLWGQAWFLDKGERLGRSFGAFKSRWFQSIQVGSDR---HAVRLEPLPFAQQQIE 225 Query: 368190 ---------TDPRIIDDLPEKIEIKQHYRLTVEQASLYQSVVAEMMGRIEESSGIERRGL 368342 D R D+ E I L + LY+ + E +E GIE Sbjct: 226 DRLRDLCLSLDARDYFDISEPIVNVVRVELPAKARRLYRDMEREAFLALE--CGIEIEAF 283 Query: 368343 VLAAMT-KLKQVCNHPAHLLHDGSAIGQ-RSGKLERFEEIMSETLAEGDRVLCFTQFTDF 368516 A+ T K Q+ N + + KL+ E I++E A G VL Sbjct: 284 NAASKTIKCLQLANGAIYTDDTATTWADVHDVKLQALESIVAE--AAGMPVL-------- 333 Query: 368517 GEMLVPHLAAKFDTDVAYLAGSTSKQR----RTQIVKDFQEPDGPKIFVLSLKAGGTGLN 368684 +A F +D+A L + + R Q ++D+ P +F A G GLN Sbjct: 334 -------VAYHFKSDLARLQRAFPQGRALDQNPQTIRDWNAGKIPLLFAHPASA-GHGLN 385 Query: 368685 L-TAANQVVHLDRWWN-----PAVENQATDRAFRIGQKRRVQVRKFIGIGTLEERIDAIL 368846 L N + WW+ +E R + G R V + + T++E + A Sbjct: 386 LQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHDRPVFIYHIVATDTMDELVMARR 445 Query: 368847 EEKKELADMVV 368879 E K+E+ D+++ Sbjct: 446 ESKREVQDLLL 456 >ref|NP_996656.1|DEAD box helicase Length = 464 Score = 76.6 bits (187), Expect = 6e-12 Identities = 110/446 (24%), Positives = 188/446 (42%), Gaps = 32/446 (7%) Frame = -2 Query: 324239 MGLGKTLQALSLFTHIKNTTANASPILVVAPTSVM-STWRAEAEKFAP--GLRVTTISAT 324069 MG+GKT+ AL+ ++ P LV+AP V STW E+ K+A + V+ + T Sbjct: 31 MGMGKTVSALTALDILE--LVEPGPSLVLAPLRVAASTWPDESTKWAHLRNVEVSAVVGT 88 Query: 324068 EKKRKTALALEIEDADLVITSYAILRL------DAQAFRSIQWDTFVLDEAQFVKNRTAK 323907 ++R+ AL A++ T+Y L D FR + D ++ ++ + Sbjct: 89 PEQRRAALK---RPANVFTTNYDNLPWLIEHLGDRWPFRKVVADESTKLKSFRLQQGGKR 145 Query: 323906 VHTAAKGIQARFR--LAITGTPMENSLTDLWSLYSITSPG--LLPGIEKFRREIVLPIES 323739 H + A+ + +TGTP N L DLW G L F+ I+ Sbjct: 146 AHALGRVAHAKVDRFIELTGTPSPNGLQDLWGQAWFLDKGERLGRSFGAFKSRWFQSIQV 205 Query: 323738 GESP-----EGMALLRRRIRPFMKRRNKELVAADLPPKQEQILS---VELSSKHRDLYNT 323583 G E + +++I ++ L A D E I++ VEL +K R LY Sbjct: 206 GSDRHAVRLEPLPFAQQQIEDRLRDLCLSLDARDYFDISEPIVNVVRVELPAKARRLYRD 265 Query: 323582 VLQKERKKLLGLINDMDRNRF-AIFRSLTLLRMLAIDPYLID--EKYEAIGSSKLSALFS 323412 + ER+ L L ++ F A +++ L++ Y D + + KL A Sbjct: 266 M---EREAFLALECGIEIEAFNAASKTIKCLQLANGAIYTDDTATTWADVHDVKLQA--- 319 Query: 323411 HLDDIIAE--GHRTIIFSQFTSFLSRVGEQLDHRNINYCYLDGSTRNRGAVIDDFRAGEA 323238 L+ I+AE G ++ F S L+R+ LD + + I D+ AG+ Sbjct: 320 -LESIVAEAAGMPVLVAYHFKSDLARLQRAFPQGRA----LDQNPQ----TIRDWNAGKI 370 Query: 323237 PIFLISLKAGGFGLTLTEADYVF-LLDPWWNPAVEAQAVD-----RAHRIGQTKNVMVYR 323076 P+ + G GL L + + WW+ Q ++ R + G + V +Y Sbjct: 371 PLLFAHPASAGHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHDRPVFIYH 430 Query: 323075 MVSEKTIEEKVLALQERKAQLFDSLV 322998 +V+ T++E V+A +E K ++ D L+ Sbjct: 431 IVATDTMDELVMARRESKREVQDLLL 456 Score = 61.2 bits (147), Expect = 2e-07 Identities = 109/431 (25%), Positives = 175/431 (40%), Gaps = 35/431 (8%) Frame = +3 Query: 367692 PTLLLCPMSLIGN-WEAEVARFAP--SLRILVYYGSARPRGDAFDAALAESDLVITT-YA 367859 P+L+L P+ + + W E ++A ++ + G+ R AAL V TT Y Sbjct: 53 PSLVLAPLRVAASTWPDESTKWAHLRNVEVSAVVGTPEQRR----AALKRPANVFTTNYD 108 Query: 367860 TASRDIAEL-ERIGWVRVVLDEAQVIKN-RLSQTTKAIRRLNG------GQKIALTGTPV 368015 I L +R + +VV DE+ +K+ RL Q K L + I LTGTP Sbjct: 109 NLPWLIEHLGDRWPFRKVVADESTKLKSFRLQQGGKRAHALGRVAHAKVDRFIELTGTPS 168 Query: 368016 ENRLSELWSIMDFVNPG-MLGTP-EKFRERFVRPIEVRADEERAHRLRRITRPYILRRTK 368189 N L +LW F++ G LG F+ R+ + I+V +D H +R P+ ++ + Sbjct: 169 PNGLQDLWGQAWFLDKGERLGRSFGAFKSRWFQSIQVGSDR---HAVRLEPLPFAQQQIE 225 Query: 368190 ---------TDPRIIDDLPEKIEIKQHYRLTVEQASLYQSVVAEMMGRIEESSGIERRGL 368342 D R D+ E I L + LY+ + E +E GIE Sbjct: 226 DRLRDLCLSLDARDYFDISEPIVNVVRVELPAKARRLYRDMEREAFLALE--CGIEIEAF 283 Query: 368343 VLAAMT-KLKQVCNHPAHLLHDGSAIGQ-RSGKLERFEEIMSETLAEGDRVLCFTQFTDF 368516 A+ T K Q+ N + + KL+ E I++E A G VL Sbjct: 284 NAASKTIKCLQLANGAIYTDDTATTWADVHDVKLQALESIVAE--AAGMPVL-------- 333 Query: 368517 GEMLVPHLAAKFDTDVAYLAGSTSKQR----RTQIVKDFQEPDGPKIFVLSLKAGGTGLN 368684 +A F +D+A L + + R Q ++D+ P +F A G GLN Sbjct: 334 -------VAYHFKSDLARLQRAFPQGRALDQNPQTIRDWNAGKIPLLFAHPASA-GHGLN 385 Query: 368685 L-TAANQVVHLDRWWN-----PAVENQATDRAFRIGQKRRVQVRKFIGIGTLEERIDAIL 368846 L N + WW+ +E R + G R V + + T++E + A Sbjct: 386 LQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHDRPVFIYHIVATDTMDELVMARR 445 Query: 368847 EEKKELADMVV 368879 E K+E+ D+++ Sbjct: 446 ESKREVQDLLL 456 >ref|NP_817947.1|gp96 Length = 566 Score = 76.3 bits (186), Expect = 7e-12 Identities = 66/217 (30%), Positives = 102/217 (47%), Gaps = 7/217 (3%) Frame = -3 Query: 276817 PRAVMLFGPPGTGKTTFAKAVASRLDWPFVEVFPSRLSGE-PGGVAAGLRSTFEQIGELE 276641 P+ ML G G GKT +A+ + +WP V + + L G+ G + LR F +I L Sbjct: 313 PKGAMLIGVSGCGKTLSCQALGAEWNWPVVRLDINALKGKYVGESESRLRGIFSKIDALG 372 Query: 276640 HAVVFIDEVEEIASKRGGEPPSPTQGVTNELLKQVAEF-RDREGRLLICAT-NFIRALDA 276467 +V+IDEVE+ + G S GV+ + L + + +DR G+ + T N L Sbjct: 373 QVIVYIDEVEK--ALEGAVSGSADGGVSADALGAILTWMQDRAGQAFVMMTANDPSKLPP 430 Query: 276466 AFLRHGRFDYVIPIGLPDDTARAAIWTRYIPEHTRD----GVDIDVLVNVSAGLTPADIE 276299 FLR GRFD V I LP R ++ + + RD G+D+ + + + G T A+I Sbjct: 431 EFLRKGRFDEVWWIDLPTRAERMSVAAATLRSNGRDAETLGIDLGAVADATNGFTGAEI- 489 Query: 276298 YAARRASQEALASSLRSRQVEISSRTHVLTTDDYLEA 276188 A +A+ ++ EI TT+D L A Sbjct: 490 --AACIEHDAMFNAFADGGREI-------TTEDILHA 517 Score = 58.2 bits (139), Expect = 2e-06 Identities = 67/234 (28%), Positives = 102/234 (43%), Gaps = 13/234 (5%) Frame = +3 Query: 849870 HGLKPPKGILLYGPPGCGKTLIAKAVANSLADRTGAGQSRKTYFLNIKGPELLDKYVGET 850049 + LK PKG +L G GCGKTL +A+ GA + L+I L KYVGE+ Sbjct: 308 YNLKLPKGAMLIGVSGCGKTLSCQAL--------GAEWNWPVVRLDINA--LKGKYVGES 357 Query: 850050 ERQLRLIFARAREKASAGFPVVVFFDEMESLFRTRGTGKS-SDVETTIVPQLLTEIDGVE 850226 E +LR IF+ K A V+V+ DE+E +G + V + +LT + + Sbjct: 358 ESRLRGIFS----KIDALGQVIVYIDEVEKALEGAVSGSADGGVSADALGAILTWMQ--D 411 Query: 850227 QLDNVIVIGASNREDLIDPAILRPGR------LDVKIRIERPDADAA------RDIFEKY 850370 + V+ +N + P LR GR +D+ R ER AA RD + Sbjct: 412 RAGQAFVMMTANDPSKLPPEFLRKGRFDEVWWIDLPTRAERMSVAAATLRSNGRD--AET 469 Query: 850371 LTVDLPLHPSVLSGHETPAEAVSALISFCVDRMFALSPENEFVEVTYADGAKEV 850532 L +DL +G A I+ C+ E++ + +ADG +E+ Sbjct: 470 LGIDLGAVADATNGF------TGAEIAACI--------EHDAMFNAFADGGREI 509 >ref|NP_958605.1|77ORF015 Length = 245 Score = 76.3 bits (186), Expect = 7e-12 Identities = 44/155 (28%), Positives = 81/155 (52%) Frame = -1 Query: 1103145 NAICAQMMLLAAEDPDADISLYINSPGGSVTAGMAIYDTMQYIKPDVSTVAMGMAASMGQ 1102966 ++ C + +L E D D+ + INS GG++ AG IY ++ K V+ +AAS Sbjct: 24 DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 83 Query: 1102965 FLLSSGAPGKRYATPHARILMHQPLGGIGGTATDIKIQAELILHMKKQMAELTAEQTGKT 1102786 + +G + +P AR+++H P G D+ AE + H+ + MAE A + GK Sbjct: 84 LIAMAGDHIEM--SPVARMMIHNPSSIAQGEVKDLNHAAETLEHVGQIMAEAYAVRAGKN 141 Query: 1102785 LEQILKDNDRDHWFTAEEALEYGFIDKMVTRSSDV 1102681 +++++ ++ W A+EA+E GF D + + ++ Sbjct: 142 KQELIEMMAKETWLNADEAIEQGFADSKMFENDNM 176 Score = 46.6 bits (109), Expect = 0.006 Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 1/165 (0%) Frame = -3 Query: 1102522 DDRVIFLGVQVDDTSADDVMAQLLVLESQDPDRDITLYINSPGGSFTAMTAIYDTMQYIK 1102343 +D+ ++ + +D T DV+ QL + D D+ + INS GG+ A + IY ++ K Sbjct: 13 EDKWVYEMLGMDSTCPKDVLTQL-----EFSDEDVDIIINSNGGNLVAGSEIYTHLRAHK 67 Query: 1102342 PEIQTVCLGQXXXXXXXXXXAGTPGKRLAL-PNARVLIHQPAMEGQGQGQASDIEIQAAE 1102166 ++ G + + P AR++IH P+ QG+ D+ A Sbjct: 68 GKVNVRITA---IAASAASLIAMAGDHIEMSPVARMMIHNPS--SIAQGEVKDLNHAAET 122 Query: 1102165 VFRMRQWLETTLSDHSNKSPEQVSNDIERDLFLTAEQAKDYGLVD 1102031 + + Q + + + K+ +++ + ++ +L A++A + G D Sbjct: 123 LEHVGQIMAEAYAVRAGKNKQELIEMMAKETWLNADEAIEQGFAD 167 >ref|NP_064753.1|RP DNA pol Length = 580 Score = 74.3 bits (181), Expect = 3e-11 Identities = 115/501 (22%), Positives = 204/501 (40%), Gaps = 33/501 (6%) Frame = +1 Query: 754357 PDQRSYELQQIAL-ERAGIELSDAESDSGQLALDLESDQTAQTHGHRAAALL-------E 754512 P+ +Y Q +A+ E+ ++L + S+ G+ ++ LE A + E Sbjct: 114 PEMLAYCKQDVAINEKVYLQLKEELSNFGKASIQLEHQMQAIVCEQEKNGFMLDTDIAEE 173 Query: 754513 VHDILAAKID--EANMSQVYRDIELPLVPVLARMELAGIAVDEAGLSG--LIDEFTKQAN 754680 ++ + + EA + + I +P+ V+ + + G L G + ++TK Sbjct: 174 IYTTCLRETNRIEAEIKEFMVPIAVPVKEVIIKRKKDGSIYSNQLLEGCNVQGDYTK--- 230 Query: 754681 ASAELAYEAIGHEVNLGSPKQLQTVLFDELDMPKTKRTKTG--YTTDAEALAELFIKTEH 754854 +A+E E NLGSP Q+ L D L T +TK+G Y E LA + T Sbjct: 231 ----IAWE----EFNLGSPAQVNKRL-DRLGWKPTVKTKSGNSYKICPENLATI-PDTAP 280 Query: 754855 PFLQHLLAYRDSTKLKQTVVGLLKTVAEDGRIHTTYQQTVAATGRLSSLDPNLQNIP--- 755025 ++ L A++ + L+ E GR+H T A T R + PN+ NIP Sbjct: 281 EAVKGLKAWKVLETRWKLAQEWLQKSQETGRVHGRVILTGAVTHRAAHQGPNMANIPSVP 340 Query: 755026 ---------VRTESGRRIREIFIADPHVDDARLLT-ADYSQIEMRIMAHLSGDAALIQAF 755175 + G R+ F V + +LL D + I++R++AH D + Sbjct: 341 HGKDGILWKMEGMYGAECRQAF----KVPEGKLLVGTDAAGIQLRVLAHYMNDPIYTEQV 396 Query: 755176 KDGEDLHSYVGSKVFGVGIDEVDSAMRSKVKAMSYGLVYGLSAYGLSRQLAIGVDEAKNL 755355 DG D+H++ + G + R K Y + G ++ L +A Sbjct: 397 IDG-DIHTF-NKEALGRYCKD-----RPTAKTFIYAFLLGAGTGMIASILGCNNRQANEA 449 Query: 755356 MEQYFERFGAVKDYLDEIVEQARANGYTETIMGRRRYLPALHSDRRQLRDMAERAALNAP 755535 M ++E ++K L QA + G+ + + D R LR ++ AL+ Sbjct: 450 MANFYEAIPSLKK-LKSQASQAASMGWMKGL------------DGRVLRIGSDHLALSVY 496 Query: 755536 IQGSAADIMKIAMLKVSDRLGDHKSTVLLQ---VHDEIIVDVHPEEIDSVTQI---VTEE 755697 +QG IM++A + R + Q VHDE +V ++ + +I ++ Sbjct: 497 LQGGETVIMRLANV-FWQRQAKKEGINFKQCAWVHDEWQTEVDEDQAQRLGEIQVQAIKD 555 Query: 755698 MGSAFELDVPLDVNVGTGTSW 755760 G+ F+L+ P+D G +W Sbjct: 556 AGTFFKLNCPMDGEAKIGKNW 576 >ref|NP_892074.1|partitioning protein SpyA Length = 389 Score = 73.9 bits (180), Expect = 4e-11 Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 12/163 (7%) Frame = +3 Query: 488922 IIAMVNQKGGVGKTTSSINLGASLAAYGRKMLLVDF-DPQGALSVGLGVNPYDLEISVYN 489098 ++A+ KGG KT++S++ LA G ++LL+D DPQ S+ G P DL I Sbjct: 108 VLAIAAHKGGAYKTSTSVHTAQWLALQGLRVLLIDATDPQATASLYHGYVP-DLHIHEDE 166 Query: 489099 LLM----NSRLDPHEVIVGTDFDNIDILPANIDLSAAEVQLVG-------EVAREQILSR 489245 L+ R D I T + N+DI+P+ + + E +L VA +L Sbjct: 167 TLLPYYLGERDDAMYAIKPTCWPNLDIIPSCLAIHRIESELYPLHDAEKLPVAPHMMLRA 226 Query: 489246 VLSKVADEYDVILIDCQPSLGLLTVNALTAAHGVIIPLETEFF 489374 + V D YDV+++D P+LG+ T+N + AA +++P E + Sbjct: 227 AIESVWDSYDVVVLDSAPNLGIGTINVVCAADVIVVPTPAELY 269 >ref|NP_891577.1|topoisomerase II large subunit Length = 607 Score = 73.6 bits (179), Expect = 5e-11 Identities = 95/390 (24%), Positives = 151/390 (38%), Gaps = 12/390 (3%) Frame = +3 Query: 572799 GYDTKVKSFVNVVSTPHGGTHLAGFEQASLKAMRKAVEANARXXXXXXXXXXXXXVLAGL 572978 G K SF N + T +GGTH+ + + K ++ + V +GL Sbjct: 258 GEGFKSVSFANGLFTKNGGTHVDYVTDDLCEEIVKRIKKEYKVDVTKAA------VKSGL 311 Query: 572979 TAVVTV-QLAEPQFEGQTKEVLGTAAVRQIVAKTVERQLGDILSSTKRAEKQQAAVLMEK 573155 T ++ V +L +F+ QTKE L GDI K+ A V+ +K Sbjct: 312 TCILIVRELPNLRFDSQTKERLTNPT-------------GDIKRHIDLDFKKLAKVIAKK 358 Query: 573156 ----------VVAELKSRISARTHKENQRRKTALEASSLPAKLYDCRDNGVENTELFIVE 573305 V+A ++ A K + K A A + A L T LF+ E Sbjct: 359 ENIIMPIIAVVLARKEAADKAAATKAAKAAKRAKVAKHVKANLIGTD----AETTLFLTE 414 Query: 573306 GDSAMGTAKAARNSDHQALFPIRGKILNVQKASLSDMLANVECAALIQVIGAGSGRSFDI 573485 GDSA+ + R+ D FP+RGK L + + ++ N E ++ + G G + Sbjct: 415 GDSAINYLISVRDQDLHGGFPLRGKTLTTWEQPEAKIVKNAEIFNIMAITGLQFGVD-AL 473 Query: 573486 DAARYGRVIIMTDADVDG-AHIRTLLLTLFFRYMKPLVEQGRVFAAVPPLHRVEVVTKRG 573662 D +Y + IMTDAD DG I+ L++ F R+ + L E GR+ P+ ++ + Sbjct: 474 DVMQYKNIAIMTDADTDGIGSIKPSLISFFARWPE-LFEDGRIRFIKTPI----IIAEPK 528 Query: 573663 TPNDVIYTYSXXXXXXXXXXXXXXXXXXXXPIQRYKGLGEMDADQLAETTMDPSMRTLRR 573842 +DV + Y I+ KGL + DP M + Sbjct: 529 KGDDVRWYYDLEDFENDRDNIKGYN------IRYIKGLASLTESDYHRVINDPVMEIITL 582 Query: 573843 VTMADAEAAENTFELLMGSSVGPRKEFIVS 573932 E + F+LL RK ++ S Sbjct: 583 -----PENYKELFDLLYSEDADQRKIWMQS 607 Score = 56.2 bits (134), Expect = 8e-06 Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 23/138 (16%) Frame = +3 Query: 571896 VLSGLEAVRKRPGMYIGTTDSR-----------------GLMHCLWEIIDNAVDEALG-- 572018 +LS E V KR GMYIG+T GL+ + EIIDN+VDEA+ Sbjct: 6 ILSDREHVLKRAGMYIGSTTYEEHQRFLFGKWTKISYVPGLVKIIDEIIDNSVDEAIRTN 65 Query: 572019 -GFGKSILIELEPDGSVAVTDSGRGIP---VDIEPKTGLTGVEVVLTKLHAGGKFGGSSY 572186 F I ++++ + V VTD+GRGIP V T + T+ AG F ++ Sbjct: 66 FEFANVISVDIQ-NNIVTVTDNGRGIPQHMVTTPEGTQIPQPVAAWTRTKAGSNFDDTN- 123 Query: 572187 AASGGLHGVGASVVNALS 572240 + G++GVG+S+ N S Sbjct: 124 RLTQGMNGVGSSLSNFFS 141 >ref|YP_006919.1|putative RNaseH ribonuclease Length = 158 Score = 73.6 bits (179), Expect = 5e-11 Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 12/126 (9%) Frame = +2 Query: 795080 DGSALGNPGPAGWAWYVDDDCWHAGGWK-----ESTNNRGELMAVLDLLN-STADAGEDL 795241 DG+ NPGP W + V DD G K ++TNN EL A+++ L S + Sbjct: 9 DGACKSNPGPGAWGFIVYDDNDDRLGSKSGYSPKTTNNEMELTAIVEALRWSVKKDNRPI 68 Query: 795242 KVFCDSKYVINALTKWMPGWKRKGWKKADGKDVLNKDL------LEQLDSALKGREVEFE 795403 ++ DS Y N + WM W+RKGWKKADG+ LN +L L Q F Sbjct: 69 VIYTDSAYCKNGMESWMFSWQRKGWKKADGEVPLNLELWQEAFKLTQQYINFHNTNPTFI 128 Query: 795404 WVKGHS 795421 VKGHS Sbjct: 129 KVKGHS 134 >ref|NP_046863.1|gp48 Length = 235 Score = 73.2 bits (178), Expect = 6e-11 Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 5/207 (2%) Frame = +3 Query: 156747 AEDLLEFSGRMCYRSWEPGLNPNVSRVRTDSAQYLGNVIASQHGSVLEHANFTFVLHNVS 156926 A++L EF+GR CY S++ PN ++ YL +++ H SVLEH++ TF + Sbjct: 31 ADELAEFAGRNCYLSFD---RPNPKT--RENVDYLNHILDVGHESVLEHSSATFYIEASR 85 Query: 156927 RVLTHELIRHRAGSAFSQESLRYVRLAD----IPFWFPEWAREDSE-LMERSLKVLDTLE 157091 VLT EL RHR S FS S RYV + +P F E + D++ E L V + Sbjct: 86 SVLT-ELERHRHLS-FSVVSQRYVDPTELGIHVPPAFTELSGSDADKAKEVLLDVQSFAQ 143 Query: 157092 EHQKWMTEHFELDEASTKFSHKKHMTSFMRRFAPEGLATGIVYTANLRSLRHVIEMRTAK 157271 E +++ F + F KK + R P + +V T N R+ R+VI+ R + Sbjct: 144 EAYEYLVHIF----SDAGFPRKKAREA-ARAVLPNMTNSPMVVTGNHRAWRYVIKNRWHE 198 Query: 157272 GAEEEIRLVFNKIGEAMREEAPAIFSD 157352 A+ EIR + ++ +RE AP + D Sbjct: 199 AADAEIRELAGELLRQLREIAPNTYQD 225 >ref|NP_510947.1|similar to phage bIL170 l16 Length = 989 Score = 72.8 bits (177), Expect = 8e-11 Identities = 107/487 (21%), Positives = 176/487 (36%), Gaps = 48/487 (9%) Frame = -1 Query: 56841 MASTIGTLITTFGAIAGVIAKIPAPL-NILG-GLFRMISPLLGLLKVG---------LMA 56695 +A +G L F A+ I I + L N+ G LF +I +L ++ LM Sbjct: 508 VAGVMGILGGVFWALMAPIVAISSVLTNVFGLSLFGVIKQILSFVRTSSLVTGAMQLLMG 567 Query: 56694 VGGAMKALWLTMMANPXXXXXXXXXXXXXXXVWFFTQTETGKKMWSAF-------MDWLG 56536 V G++ A L ++A + T TE + +A + WL Sbjct: 568 VFGSISAPILAVIAVIGAFIGVLVYLWKTNENFRNTITEAWNGVKTAVSGAIQGVVGWLT 627 Query: 56535 QAWEWIKXXXXXXXXXXXXXXXXAWNWVKDTSVAIWNGFISWIVGLWN----------GI 56386 + W I+ + + I ++ I GLW + Sbjct: 628 ELWGKIQSTLQPIMPILQVLGQIFMQVLGVLVIGIITNVMNIIQGLWTLITIAFQAIGTV 687 Query: 56385 IGTAKAVFLGIGTAIIT--------AWNWIKTKTSDVWNAIINWIKDTWNKIITTISDAV 56230 I A + +G+ TA+I AW IKT ++V + I +++ W II ++ + Sbjct: 688 ISVAVQIIVGLFTALIQLLTGDLSGAWETIKTTITNVLDTIWQYMQSVWESIIGFLTGVM 747 Query: 56229 NKV-----KNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGK-----VQQIKNW 56080 N+ +W S W+ I + +WN + +R + S+V G+ + + W Sbjct: 748 NRTLSMFGTSW-SQIWSTITNFVSSIWNSVTSWFSR-VASSVAEKMGQALNFIITKGSEW 805 Query: 56079 ITNTWNRVKNTTSNAWSGIKSAVRNGINGAVNFVRRLPGRALSALGNIGSKLYNSGKAMI 55900 ++N WN V N S G K V N +G N AL + + S N+G +I Sbjct: 806 VSNIWNTVTNFASKVADGFKRVVSNVGDGMKN--------ALDKIKSFFSDFLNAGAELI 857 Query: 55899 DGFKDGIXXXXXXXXXXVKDGLSRIRNFFPFSPAKEGPFSGKGWTWYSGQSMSEGLADGM 55720 +G+ V D +S W S S G G Sbjct: 858 GKVAEGVANAAHKVVSAVGDAISS--------------------AWDSVTSFVSG--HGG 895 Query: 55719 ASGTSDVVRQSEALMKAAAFDAPSIPGMTRPSSSASGLDE--DTGPTSNINFHITNPVAE 55546 SG + S+A + A +F G T S S L + + T +++ H+TN V Sbjct: 896 GSGLGKGLAVSQAKVMATSF------GKTFTSELGSTLTDGFNDSLTPSVDGHMTNDVQH 949 Query: 55545 PTSETAR 55525 E R Sbjct: 950 SMKENNR 956 >ref|NP_049656.2|UvsX RecA-like recombination protein Length = 391 Score = 72.4 bits (176), Expect = 1e-10 Identities = 63/260 (24%), Positives = 116/260 (44%), Gaps = 8/260 (3%) Frame = +1 Query: 301720 IPTGSIALDIALGIGGLPRGRVVEIYGPESSGKTTVALHAVAN--AQKTGGIAAFIDAEH 301893 IP +IAL + GG+ G ++ + GP S K+ L V++ Q + F D+E Sbjct: 36 IPMMNIALSGEI-TGGMQSGLLI-LAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 93 Query: 301894 ALDPEYAKKLGVDTDQLLVSQPDTGEQ-ALEIADML--IRSGALDVIVIDSVAALVPKAE 302064 + P Y + +GVD ++++ + + EQ +++ + L I G V+ IDS+ L K E Sbjct: 94 GITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKE 153 Query: 302065 IEGEMGDSHVG--LQARLMSQALRKIAGALSQSKTTAIFINQLREKVGVFFGSPETTSGG 302238 E + + V +A+ M R + S I IN E +F +T GG Sbjct: 154 TEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYETQEMF---SKTVMGG 210 Query: 302239 KALKFYASVRIDVRRIETLKEGQDAVGNRTRAKIVKNKIAPPFKQAEFDIIYGQGISREG 302418 Y++ + + +K+G D G + + K++ + D+ + GI Sbjct: 211 GTGPMYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYS 270 Query: 302419 SLIDMGVDNG-IIRKSGSWF 302475 L+DM ++ G +++ W+ Sbjct: 271 GLLDMALELGFVVKPKNGWY 290 >ref|NP_795404.1|head maturation protease Length = 268 Score = 72.0 bits (175), Expect = 1e-10 Identities = 43/132 (32%), Positives = 71/132 (53%) Frame = -1 Query: 1103094 DISLYINSPGGSVTAGMAIYDTMQYIKPDVSTVAMGMAASMGQFLLSSGAPGKRYATPHA 1102915 DI + +NS GG V G IY ++ +V V G+AAS+ ++ +G K A+P A Sbjct: 43 DIQVRLNSGGGEVFVGSEIYSALKDYPGNVEVVITGLAASIASIIMLAGDVIK--ASPMA 100 Query: 1102914 RILMHQPLGGIGGTATDIKIQAELILHMKKQMAELTAEQTGKTLEQILKDNDRDHWFTAE 1102735 +I++H G G +K +E++ + +A + A++TGK +I + D + WFTA Sbjct: 101 QIMIHNASWGSYGDYRQLKHDSEVVENASISLAGMYAQKTGKQETEIRELLDAETWFTAN 160 Query: 1102734 EALEYGFIDKMV 1102699 A E G ID ++ Sbjct: 161 SAKEIGLIDDIL 172 >ref|YP_006605.1|Gp25 Length = 387 Score = 72.0 bits (175), Expect = 1e-10 Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 12/163 (7%) Frame = +3 Query: 488922 IIAMVNQKGGVGKTTSSINLGASLAAYGRKMLLVDF-DPQGALSVGLGVNPYDLEISVYN 489098 ++A+++ KGGV KT+S+++ LA G ++LL++ DPQG S+ G P DL I + Sbjct: 108 VLAVMSHKGGVYKTSSAVHEAQWLALQGHRVLLIEGNDPQGTASMYHGYVP-DLHIHADD 166 Query: 489099 LLM----NSRLDPHEVIVGTDFDNIDILPANIDLSAAEVQLVGEVAREQI-------LSR 489245 L+ R + I T + +DI+P+ + L E L+ A+ ++ L Sbjct: 167 TLLPFYLGERDNAEYAIKPTCWPGLDIIPSCLALHRIETDLMQYHAQGKLPHPPHLMLRA 226 Query: 489246 VLSKVADEYDVILIDCQPSLGLLTVNALTAAHGVIIPLETEFF 489374 + V D YD+I+ID P+LG T+N + AA +++ E F Sbjct: 227 AIESVWDNYDIIVIDSAPNLGTGTINVVCAADIIVVATPAELF 269 >ref|NP_813726.1|gp11 Length = 624 Score = 71.6 bits (174), Expect = 2e-10 Identities = 78/285 (27%), Positives = 118/285 (41%), Gaps = 12/285 (4%) Frame = +1 Query: 754942 GRIHTTYQQTVAATGRLS-SLDPNLQNIPVRTESGRRIREIFIADPHVDDARLLTADYSQ 755118 GRIH T A TGR+S S D Q +P S IR + D D + + D+ Sbjct: 352 GRIHPTINTLQARTGRMSISGDFAAQTLP---SSDWMIRRAVLGDK--PDHIVGSVDFQA 406 Query: 755119 IEMRIMAHLSGDAALIQAF----------KDGEDLHSYVGSKVFGVGIDEVDSAMRSKVK 755268 IEMR++A L+G + + F DG D+H Y + G + D R K Sbjct: 407 IEMRVLAALAGVRRMTEGFLDPDPDPSVYPDGFDIHMYTARLIKGPNATKRD---RKVFK 463 Query: 755269 AMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQARANGYTETI 755448 +G VYG +SRQ E + +Y F +K + +ARA G T+ Sbjct: 464 GAGFGKVYGGGIKTISRQTGAPEHEIARAVAEYDRVFPEIKRASSKWQREARARGCV-TV 522 Query: 755449 MGRRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIAMLKVSDRLGDHKSTVLLQV 755628 R LP DR ++ A +N Q +A D++ AM+ + D + L + Sbjct: 523 TPTGRILPL---DRNRM-----YAVVNYKCQSTARDVLGQAMINMRD--AGLLEYMKLPI 572 Query: 755629 HDEIIVDVHPEEIDSVTQIVTEEMG-SAFELDVPLDVNVGTGTSW 755760 HDEI+ + + + M F + V + ++G G SW Sbjct: 573 HDEIVFSAPKSDAQDIAREFERCMTMDLFGVPVVAEADLG-GRSW 616 >ref|NP_046923.1|gp28 Length = 387 Score = 71.6 bits (174), Expect = 2e-10 Identities = 53/182 (29%), Positives = 94/182 (51%), Gaps = 16/182 (8%) Frame = +3 Query: 488922 IIAMVNQKGGVGKTTSSINLGASLAAYGRKMLLVDF-DPQGALSVGLGVNPYDLEISVYN 489098 ++++++ KGGV KT+S+++ LA G ++LLV+ DPQG S+ G P DL I + Sbjct: 108 VLSVMSHKGGVYKTSSAVHQAQWLALQGHRVLLVEGNDPQGTASMYHGYVP-DLHIHADD 166 Query: 489099 LLM----NSRLDPHEVIVGTDFDNIDILPANIDLSAAEVQLVGEVAREQI-------LSR 489245 L+ R + I T + +DI+P+ + L E L+ + ++ L Sbjct: 167 TLLPFYLGKRDNAEYAIKPTCWPGLDIIPSCLALHRIETDLMQYHSEGKLPHPPHLMLRA 226 Query: 489246 VLSKVADEYDVILIDCQPSLGLLTVNALTAAHGVIIPLETEFF----ALRGVALLVETIE 489413 + V D YD+I+ID P+LG T+N + AA +++ E F L+ +L++ +E Sbjct: 227 AIESVWDNYDIIVIDSAPNLGTGTINVVCAADVIVVATPAELFDYASVLQFFTMLLDLLE 286 Query: 489414 KI 489419 + Sbjct: 287 TV 288 >ref|NP_858955.1|protease of the ClpP family Length = 245 Score = 71.2 bits (173), Expect = 2e-10 Identities = 41/133 (30%), Positives = 75/133 (56%) Frame = -1 Query: 1103094 DISLYINSPGGSVTAGMAIYDTMQYIKPDVSTVAMGMAASMGQFLLSSGAPGKRYATPHA 1102915 DI++ I+SPGG + AG+AIY+ + K V+ +G AAS + +G + P A Sbjct: 74 DITVNIDSPGGDMFAGLAIYNLLLAHKGRVTVNVIGRAASAASVIAMAGDQINMH--PSA 131 Query: 1102914 RILMHQPLGGIGGTATDIKIQAELILHMKKQMAELTAEQTGKTLEQILKDNDRDHWFTAE 1102735 I++H +GG + ++ +E++ MA++ +TG + + I++ D + W +AE Sbjct: 132 FIMIHNCHLVVGGNSKELAEVSEMMKPFDSAMADIYVARTGMSKDTIVQMMDAETWMSAE 191 Query: 1102734 EALEYGFIDKMVT 1102696 E+++ GF D +VT Sbjct: 192 ESVKLGFADSIVT 204 >ref|NP_510993.1|tail tape measure protein Length = 1026 Score = 71.2 bits (173), Expect = 2e-10 Identities = 111/565 (19%), Positives = 210/565 (37%), Gaps = 23/565 (4%) Frame = -1 Query: 57609 IDSANAQLKGLGYSAKDVENISGQVATALEGGMMTLGEGTRVAAGGLAAGVEQGKELEKY 57430 +DS +G G S D+ + + + A +E ++ +G ++ AGV+ L Sbjct: 385 LDSVTYVAQGTGQSVDDIFDKAVKGAPQIEALGLSFADGAQLMGNLDKAGVDSSATL--- 441 Query: 57429 IGLVDAAAIGMNTSVDETAMIFNRVQGSGKVMTEELQMVEQRMPGFSNALQEHIGVASDD 57250 +S+ + ++++ + K + + L +E ++ G + E I +A++ Sbjct: 442 ------------SSLTKASVVYAK---ENKTLAQGLSELEGKILG-AKTETEKINLAAE- 484 Query: 57249 EFKKMVTAGEVGSDAFLETMDTFAGDMAKEHAKSFDGLVDLAKAYVGQIGEAMLGGVFEQ 57070 G G+ ++ ++ + S DGL A+ G + + FE Sbjct: 485 ------VFGSKGAPRMVKAIE--------DGRLSLDGLAGTAEMASGTVSKT-----FEA 525 Query: 57069 SKDSIAEFVDWLSDPGVQAKAAELGKTIGDVFSKVL----GVVKNVITWFMGLPAPIQKT 56902 + D I L++ V+ A+LG +I +V + +L V++ V WF GLPAP+++ Sbjct: 526 TLDPIDRQDVALNN--VKMAMADLGNSIAEVLAPILDALSSVLQKVSEWFNGLPAPVRQ- 582 Query: 56901 XXXXXXXXXXXXXXXXXXGTMASTIGTLITTFGAIAGVIAKIPAPLNILGGLFRMISPLL 56722 + IG L+ F A+ VI I A + ILG + +L Sbjct: 583 --------------------VTVVIGLLLIGFTALLPVITAIVAMIGILG------TAML 616 Query: 56721 GLLKVGLMAVGGAMKALWLTMMANPXXXXXXXXXXXXXXXVWFFTQTETGKKMWSAFMDW 56542 G+ VG++A A A+ + W + E + W +W Sbjct: 617 GV--VGIIAAIVAGIAILVV------------------GFKWLWDNCEGFRNFWIGLWEW 656 Query: 56541 L----GQAWEWIKXXXXXXXXXXXXXXXXAWNWVKDTSVAIWNGFISWIVG----LWNGI 56386 + AWE+I+ + D W + I+G +W+ I Sbjct: 657 IVAAFKAAWEYIQPGLQS---------------IGDALKKFWEEYGPTIIGALQAVWDFI 701 Query: 56385 IGTAKAVFLGIGTAIITAWNWIKTKTSDVWNAIINWIKDTWNKIITTISDAVNKVKNWIS 56206 +G W++ + +W + + +K W+ I+ + A++ + I Sbjct: 702 VGFVA---------------WLEPLWTFLWEGLKSTLKFAWDAILAIVQFALDYLGGLI- 745 Query: 56205 DAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKVQQIKNWITN-----------TWNR 56059 D W I T W+ + I +A+ ++G + WI N W Sbjct: 746 DFWAGIFTGD---WDRVWKGIQEMTSAALEAIKGIFFALVRWIDNILKSLGIDMGAIWKS 802 Query: 56058 VKNTTSNAWSGIKSAVRNGINGAVN 55984 + + T AW I + N I A N Sbjct: 803 ITDATKTAWKWISDYIVNPIRDANN 827 >ref|YP_006959.1|putative deoxyUTP pyrophosphatase Length = 148 Score = 71.2 bits (173), Expect = 2e-10 Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 1/109 (0%) Frame = +2 Query: 585713 LEPFERKVVPTGIAIALPIGTAGFVHPRSGLSSKHGVTVINAPGTIDAGYRGEIKVPLIN 585892 + P + ++ TG+A+ +P G G V PRS L +H + + N G ID+ YRG IK+ L N Sbjct: 40 IAPGKSLMIDTGVAVEIPRGWFGLVVPRSSLGKRH-LMIANTAGVIDSDYRGTIKMNLYN 98 Query: 585893 LDARTPVRISRGDRIAQLVI-QEIKQADFTLVESLDDSDRGAGGFGSTG 586036 + + +R+ QLV+ +F +V+ L+++ RG GGFGS+G Sbjct: 99 YGSEMQT-LENFERLCQLVVLPHYSTHNFKIVDELEETIRGEGGFGSSG 146 >ref|YP_164394.1|DEAD box family helicase Length = 526 Score = 70.9 bits (172), Expect = 3e-10 Identities = 86/364 (23%), Positives = 151/364 (41%), Gaps = 7/364 (1%) Frame = -1 Query: 379518 WHQSECRGVVEAVTGAGKTMIGITAAFEAFRQGIKVLVLVPTAELQSQWQRRLMET---- 379351 W + + ++ TG GKT++ + ++G +VLVL EL Q +L ++ Sbjct: 18 WDKGNRKTLLVLPTGCGKTIVFSKVIEDRVKKGERVLVLAHRGELLEQAADKLEKSTGLK 77 Query: 379350 --LPQADVGTLGNGRRDSLGACDILVAIINSATRAELLKEHSDGLLIADECHRYAAKSFS 379177 +A+ +LG+ R +G+ L + + K+ D ++I DE H + S+ Sbjct: 78 TATEKAEQTSLGSWFRVVVGSVQTL---MREKRLMQFPKDFFDTIII-DEAHHCVSDSYQ 133 Query: 379176 KALR-SDFRYRLGLTATYQRPDKANTAVLDPYFGGVVFQMWYERALRDGVIAEFDIAFVG 379000 + L+ D LG+TAT PD+++ L YF + F+ +A+++G ++ + Sbjct: 134 RVLQYFDSANVLGVTAT---PDRSDMRNLGSYFESLAFEYTLPKAIKEGYLSPIKALTIP 190 Query: 378999 IGLTDSERGEYQVASSAISKLGMSLKNKLNLQEASFDQFMVAIQTFAKKKNDPSPIVFMA 378820 + L S G+ Q A +LG +L DP Sbjct: 191 LELDLSGVGQ-QAGDFAAGQLGSAL--------------------------DP------- 216 Query: 378819 RKYLDAVVKRQQVLTNAKNKMKILEGIAPVIAESKGSLIFSQTVDSSSQAALLLQRAGIE 378640 YL+++ + +A V + K +++F V +S + LL + G + Sbjct: 217 --YLESIA----------------DEMAKVAKDRK-TVVFLPLVKTSQKFTELLNKKGFK 257 Query: 378639 TKAVSSASKPHERRGAMQQFANGFAKVLCAPRILDEGIDVPDSDLAVVLSGSKQPRQTIQ 378460 V+ SK +R ++ F N VLC +L EG D P D VVL +K Q Sbjct: 258 AAEVNGDSK--DRAEILEDFDNDKYNVLCNSMLLTEGWDCPSVDCVVVLRPTKVRSLYSQ 315 Query: 378459 RLGR 378448 +GR Sbjct: 316 MVGR 319 Score = 40.8 bits (94), Expect = 0.35 Identities = 29/120 (24%), Positives = 59/120 (49%) Frame = +2 Query: 416273 RILLADAVGLGKTIEIGLILAELIKRGRGDRILVVTPKHVLEQMQHEMWTKFAIPFVRLD 416452 + LL G GKTI ++ + +K+G +R+LV+ + L + + K Sbjct: 24 KTLLVLPTGCGKTIVFSKVIEDRVKKG--ERVLVLAHRGELLEQAADKLEK--------- 72 Query: 416453 SQGIQRIRQKLPATRNPFTYFKRAIISIDTLKSDRYLSHLRRHKWDAVVIDESHNVTNTS 416632 S G++ +K T + ++F+ + S+ TL ++ L + +D ++IDE+H+ + S Sbjct: 73 STGLKTATEKAEQT-SLGSWFRVVVGSVQTLMREKRLMQFPKDFFDTIIIDEAHHCVSDS 131 >ref|NP_445687.1|putative helicase Length = 559 Score = 70.1 bits (170), Expect = 5e-10 Identities = 88/372 (23%), Positives = 152/372 (40%), Gaps = 11/372 (2%) Frame = -1 Query: 379497 GVVEAVTGAGKTMIGITAAFEAFRQ--GIKVLVLVPTAELQSQWQR-RLMETLP----QA 379339 G+++A TG+GK++I I +A E + K++ V + L Q+Q E LP Sbjct: 195 GIIKAPTGSGKSVIAILSALEILKNKNNAKIVYAVNSTTLLKQFQNFAKKEDLPFVLVSG 254 Query: 379338 DVGTLGNGRRDSLGACDILVAIINSATRA-ELLKE--HSDGLLIADECHRYAAKSF-SKA 379171 ++ + G R A I E LKE + L+I DE H A S Sbjct: 255 EIDEIKKGERSDFIALSISYYYSKKKRNEHEKLKELVTNADLVIIDEAHHTPANIVKSLL 314 Query: 379170 LRSDFRYRLGLTATYQRPDKANTAVLDPYFGGVVFQMWYERALRDGVIAEFDIAFVGIGL 378991 L S RLGL+AT R D ++ G + F + Y +R+ + + Sbjct: 315 LDSPNSIRLGLSATPIREDGKELEIMG-LLGKISFTIDYTELVRNRYLVPIEYI------ 367 Query: 378990 TDSERGEYQVASSAISKLGMSLKNKLNLQEASFDQFMVAIQTFAKKKNDPSPIVFMARKY 378811 I ++ LK K+ + + D + FAK + + R + Sbjct: 368 ------------RYIPEIPKKLKLKIQDLDDNKDP-----ENFAKYYSS------LLRSF 404 Query: 378810 LDAVVKRQQVLTNAKNKMKILEGIAPVIAESKGSLIFSQTVDSSSQAALLLQRAGIETKA 378631 + +Q+++ K L+ + + + + A +++ GI Sbjct: 405 EHSPNTNKQIISKIKQ------------LNQYPCLVIVRRIAIAKKLAEIMRENGIIADW 452 Query: 378630 VSSASKPHERRGAMQQFANGFAKVLCAPRILDEGIDVPDSDLAVVLSGSKQPRQTIQRLG 378451 VSS +K ER ++ N +VL + + DEG+D+P+ L V+L+ K + IQR+G Sbjct: 453 VSSKTKLEERMEKIEALKNEKLQVLISTSLADEGLDIPNLRLVVLLTQGKSRIKLIQRIG 512 Query: 378450 RIIRRKDDGRHG 378415 R++R + R G Sbjct: 513 RVMRVSQNKRKG 524 Score = 50.4 bits (119), Expect = 4e-04 Identities = 29/107 (27%), Positives = 56/107 (52%) Frame = -2 Query: 618266 LTRILEVEEYEGIIMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGK 618087 +++I ++ +Y +++ VR ++LAE +R G A ++ + R I+ L+N K Sbjct: 415 ISKIKQLNQYPCLVI-VRRIAIAKKLAEIMRENGIIADWVSSKTKLEERMEKIEALKNEK 473 Query: 618086 VDILVATDVAARGLDVERITLVVNFDIPHDTESYVHRIGRTGRAGRS 617946 + +L++T +A GLD+ + LVV + RIGR R ++ Sbjct: 474 LQVLISTSLADEGLDIPNLRLVVLLTQGKSRIKLIQRIGRVMRVSQN 520 Score = 44.3 bits (103), Expect = 0.031 Identities = 71/342 (20%), Positives = 139/342 (40%), Gaps = 11/342 (3%) Frame = -1 Query: 1670583 ATPGAGKTTFALRVAAELLAQRVVNRVTVVAPTEHLKVQWADSASRVGIK---LDPHFKN 1670413 A G+GK+ A+ A E+L + ++ + L Q+ + A + + + Sbjct: 199 APTGSGKSVIAILSALEILKNKNNAKIVYAVNSTTLLKQFQNFAKKEDLPFVLVSGEIDE 258 Query: 1670412 AQGKHAPGYHGVAITYAQVAAKPVLHHN--RTAAGRTLVILDEVHHGGDALSWGDAVREA 1670239 + + ++I+Y K H LVI+DE HH + + V+ Sbjct: 259 IKKGERSDFIALSISYYYSKKKRNEHEKLKELVTNADLVIIDEAHH-----TPANIVKSL 313 Query: 1670238 F--GPAVRRLSLTGTPFRSDTSPIPFVTYAPDENGIRTSVADYSYGYGRALKDSVVRPVL 1670065 P RL L+ TP R D + + G+ ++ ++ Y +++ + P+ Sbjct: 314 LLDSPNSIRLGLSATPIREDGKELEIM-------GLLGKIS-FTIDYTELVRNRYLVPIE 365 Query: 1670064 FLTYAGTMSWRTKAGDEMSHVLGEETTKDINSQA-WRTALDPSGDWMPAVLKAADIRLTE 1669888 ++ Y + + K + + KD + A + ++L S + P K ++ + Sbjct: 366 YIRYIPEIPKKLKL-----KIQDLDDNKDPENFAKYYSSLLRSFEHSPNTNKQIISKIKQ 420 Query: 1669887 VRRTVHDAGGLVIATDQDSARAYAKILRELTGEAPTVVLSDEAGASERIEKFQ---NSTD 1669717 + + LVI A+ A+I+RE A V S + ER+EK + N Sbjct: 421 LNQYPC----LVIVRRIAIAKKLAEIMRENGIIADWV--SSKTKLEERMEKIEALKNEKL 474 Query: 1669716 RWMVAVRMVSEGVDVPRLCVGVYATSSATPLFFAQAIGRFVR 1669591 + +++ + EG+D+P L + V T + + Q IGR +R Sbjct: 475 QVLISTSLADEGLDIPNLRLVVLLTQGKSRIKLIQRIGRVMR 516 >ref|YP_006528.1|ParA Length = 398 Score = 70.1 bits (170), Expect = 5e-10 Identities = 75/292 (25%), Positives = 122/292 (41%), Gaps = 31/292 (10%) Frame = +3 Query: 488889 PAPLDTHGPARIIAMVNQKGGVGKTTSSINLGASLAAYGR------KMLLVDFDPQGALS 489050 P D + A +I + N KGGV KT S+++L ++ A+ ++L++D DPQ + + Sbjct: 99 PKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSAT 158 Query: 489051 VGLG-------VNPYDLEISVYNLLMNSRLDPHEVIVGTDFDNIDILPANID-------- 489185 + L VN + + N+ L+ E IV + +D++PA+ID Sbjct: 159 MFLSHKHSIGIVNATSAQAMLQNVSREELLE--EFIVPSVVPGVDVMPASIDDAFIASDW 216 Query: 489186 LSAAEVQLVGEVAREQILSRVLSKVADEYDVILIDCQPSLGLLTVNALTAAHGVIIPL-- 489359 L G+ + V+ K+ +YD IL+D P L NAL +A+ + PL Sbjct: 217 RELCNEHLPGQNIHAVLKENVIDKLKSDYDFILVDSGPHLDAFLKNALASANILFTPLPP 276 Query: 489360 -ETEFF-ALRGVALLVETIEKIQDRLNPSLVVDGILATMFDSRTLHSKEVMSRVTEAFDD 489533 +F +L+ VA L E ++ I D + I S K S E F Sbjct: 277 ATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKADHKYCHSLAKEVFGG 336 Query: 489534 KVFETVINRTVKFP------DASVAAEPITSFAPKHAGSEAYRRLARELIAR 489671 + + + R F D ++A P T A A R+A E A+ Sbjct: 337 DMLDVFLPRLDGFERCGESFDTVISANPATYVGSADALKNA--RIAAEDFAK 386 >ref|NP_877458.1|putative DNA directed DNA polymerase Length = 807 Score = 69.7 bits (169), Expect = 7e-10 Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 22/201 (10%) Frame = +1 Query: 754825 LAELFIKTEHPFLQHLLAYRDSTKLKQTVVGLLKTVAEDGRIHTTYQQTVAATGRLSSLD 755004 LAEL ++ H Y +K T G+L+ V +DG IH + T AT RLSS Sbjct: 422 LAELHKDNSSFYITH--TYNKDGTIKDTK-GMLQYVDDDGIIHHSLNTTATATTRLSSSR 478 Query: 755005 PNLQNIPVR----TESGRRIREIFIADPHVDDARLLTADYSQIEMRIMAHLSGDAALIQA 755172 PNLQ +P + E+G R++E+F++ D + DY+ +E+ ++A LS D L+ Sbjct: 479 PNLQQLPSKDEDDPEAGSRVKEMFVS-RFGADGMIGETDYTALEVVMLAALSKDRNLLAK 537 Query: 755173 FKDGEDLHSY----VGSKVFGVGIDEVDS--------------AMRSKVKAMSYGLVYGL 755298 G D+H Y + G D++ + R +K ++ YG Sbjct: 538 LMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNHPWHGRMMQARKNIKPKAFSAQYGA 597 Query: 755299 SAYGLSRQLAIGVDEAKNLME 755361 SA G++ V+EA+ ++ Sbjct: 598 SAAGIAFNTGCTVEEAQEFLD 618 >ref|NP_046717.1|putative dUTPase Length = 142 Score = 68.9 bits (167), Expect = 1e-09 Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 1/143 (0%) Frame = +2 Query: 585611 LKIDLKLLDAGITPPSYAHASDAGADLCSAIDFVLEPFERKVVPTGIAIALPIGTAGFVH 585790 ++I +K LD T + D DL +A D ++ E K+VP G+A+ LP G V Sbjct: 1 MQIKIKYLDETQTRINKMEQGD-WIDLRAAEDVAIKKDEFKLVPLGVAMELPEGYEAHVV 59 Query: 585791 PRSGLSSKHGVTVINAPGTIDAGYRGEIKVPLINLDARTPVRISRGDRIAQL-VIQEIKQ 585967 PRS GV N+ G ID Y+G+ A +I +GDRI Q +++++ Sbjct: 60 PRSSTYKNFGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTKIKKGDRICQFRIMKKMPA 119 Query: 585968 ADFTLVESLDDSDRGAGGFGSTG 586036 D V+ L + DR GG GSTG Sbjct: 120 VDLIEVDRLGNGDR--GGHGSTG 140 >ref|NP_859398.1|hypothetical protein Length = 108 Score = 68.2 bits (165), Expect = 2e-09 Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 9/106 (8%) Frame = -1 Query: 1806612 KYTDELKARAVELVIHAQADPETANGAITRVANELGLSKETLRVWVRKHK-----DSGKT 1806448 +++ E++ RA+ +V+ +Q + ++ AI +A ++G + ETLRVWVR+H+ G Sbjct: 6 RFSPEVRQRAIRMVLESQDEYDSQWAAICSIAPKIGCTPETLRVWVRQHERDTGGGDGGL 65 Query: 1806447 TPAES---VDLEAENRRLRAELTEAKRANEILRRASAFFA-AELDR 1806322 T AE +LE ENR LR R+N+ILR+ASA+FA AE DR Sbjct: 66 TSAERQRLKELERENRELR-------RSNDILRQASAYFAKAEFDR 104 Score = 68.2 bits (165), Expect = 2e-09 Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 9/106 (8%) Frame = +3 Query: 1793067 KYTDELKARAVELVIHAQADPETANGAITRVANELGLSKETLRVWVRKHK-----DSGKT 1793231 +++ E++ RA+ +V+ +Q + ++ AI +A ++G + ETLRVWVR+H+ G Sbjct: 6 RFSPEVRQRAIRMVLESQDEYDSQWAAICSIAPKIGCTPETLRVWVRQHERDTGGGDGGL 65 Query: 1793232 TPAES---VDLEAENRRLRAELTEAKRANEILRRASAFFA-AELDR 1793357 T AE +LE ENR LR R+N+ILR+ASA+FA AE DR Sbjct: 66 TSAERQRLKELERENRELR-------RSNDILRQASAYFAKAEFDR 104 >ref|NP_958615.1|77ORF001 Length = 1509 Score = 68.2 bits (165), Expect = 2e-09 Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 15/178 (8%) Frame = -1 Query: 56433 IWNGFISWIVGLWNGII----GTAKAVFLGIGTAIITAWNWIKTKTSDVWNAIINWIKDT 56266 IWN W VG G++ G K + GI W+ I++ S +AI N K Sbjct: 736 IWNLVQLWFVGKILGVVRYFGGLLKGLIAGI-------WDVIRSIFSKSLSAIWNATKSI 788 Query: 56265 WNKIITTISDAVNKVKNWISDAWTMIKTMTA----KLWNGIKMAIARAIVSAVRTVQGKV 56098 + + ++ +KNW+S+ W+ I+T T L++G+K + +A + + Sbjct: 789 FGFLFNSVKSIFTNMKNWLSNTWSSIRTNTIGKAQSLFSGVKSKFTN-LWNATKEI---F 844 Query: 56097 QQIKNWITNTWNRVKNTT----SNAWS---GIKSAVRNGINGAVNFVRRLPGRALSAL 55945 ++NW++N WN +K+ T S WS GI + +R+G++ ++ ++ G +SA+ Sbjct: 845 SNLRNWMSNIWNSIKDNTVGIASRLWSKVRGIFTNMRDGLSSIIDKIKSHIGGMVSAI 902 Score = 58.2 bits (139), Expect = 2e-06 Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 8/221 (3%) Frame = -1 Query: 56463 WNWVKDTSVAIWNGFISWIVGLWNGIIGTAK---AVFLGIGTAIITAWNWI-KTKTSDVW 56296 W VK V+ W I G N I+G K ++F+G + A I K +W Sbjct: 678 WPAVKALIVSTWENIKGVIQGALNIILGLIKFFSSLFVGDWRGVWDAVVMILKGAVQLIW 737 Query: 56295 NAIINWIKDTWNKIITTISDAVNKVKNWISDAWTMIKTMTAK----LWNGIKMAIARAIV 56128 N + W KI+ + +K I+ W +I+++ +K +WN K +I + Sbjct: 738 NLVQLWFV---GKILGVVRYFGGLLKGLIAGIWDVIRSIFSKSLSAIWNATK-SIFGFLF 793 Query: 56127 SAVRTVQGKVQQIKNWITNTWNRVKNTTSNAWSGIKSAVRNGINGAVNFVRRLPGRALSA 55948 ++V+++ +KNW++NTW+ ++ T + S V++ N + + S Sbjct: 794 NSVKSI---FTNMKNWLSNTWSSIRTNTIGKAQSLFSGVKSKFTNLWNATKEI----FSN 846 Query: 55947 LGNIGSKLYNSGKAMIDGFKDGIXXXXXXXXXXVKDGLSRI 55825 L N S ++NS K G + ++DGLS I Sbjct: 847 LRNWMSNIWNSIKDNTVGIASRLWSKVRGIFTNMRDGLSSI 887 Score = 42.4 bits (98), Expect = 0.12 Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 19/158 (12%) Frame = -1 Query: 56391 GIIGTAKAVFLGIGTAIITAWNWIKTKTSDVWNAIINWIKDTWNKIITTISDAVNKVKNW 56212 G IG V G+ A A+ +T + V N I +K T++ I I V+ VKN Sbjct: 552 GPIGIVLGVLAGLAVAFTIAYKKSETFRNFV-NGAIESVKQTFSNFIQFIQPFVDSVKNI 610 Query: 56211 ISDAWTMIKTMTAKLW---NGIKMAIARAIVSAVRTVQGKVQQIKNWITN---------- 56071 A + I +W NG +IV A++ + ++ I +I N Sbjct: 611 FKQAISAIVDFAKDIWSQINGFFNENGISIVQALQNICNFIKAIFEFILNFVIKPIMFAI 670 Query: 56070 ------TWNRVKNTTSNAWSGIKSAVRNGINGAVNFVR 55975 W VK + W IK ++ +N + ++ Sbjct: 671 WQVMQFIWPAVKALIVSTWENIKGVIQGALNIILGLIK 708 >ref|NP_047956.2|gp11 Length = 617 Score = 67.8 bits (164), Expect = 3e-09 Identities = 77/280 (27%), Positives = 118/280 (42%), Gaps = 7/280 (2%) Frame = +1 Query: 754942 GRIHTTYQQTVAATGRLS-SLDPNLQNIPVRTESGRRIREIFIADPHVDDARLLTADYSQ 755118 GRIH A TGR+S + D Q +P S IR + D D + + D+ Sbjct: 352 GRIHPNINTLQARTGRMSINGDFAAQTLP---SSDWMIRRAIVGD--APDHIMGSVDFQA 406 Query: 755119 IEMRIMAHLSGDAALIQAFKDGE---DLHSYVGSKVFGVGIDEVDSAMRSKVKAMSYGLV 755289 IEMR++A L+ + F +G D+H Y + G+ E R K +G V Sbjct: 407 IEMRVLAALADVKRMKDGFVNGGSDFDIHMYTAQLIKGL---EATKRDRKVFKGAGFGKV 463 Query: 755290 YGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQARANG-YTETIMGRRRY 755466 YG ++RQ E + +Y F +K +AR G T ++ GRR Sbjct: 464 YGGGVATIARQTGATEAEIARAVAEYDRVFPEIKRASSRWQREARGTGLVTVSVTGRR-- 521 Query: 755467 LPALHSDRRQLRDMAERAALNAPIQGSAADIMKIAMLKVSDR-LGDHKSTVLLQVHDEII 755643 L DR + A +N Q +A D++ AML + D L D+ + L +HDEI+ Sbjct: 522 ---LPLDRNR-----TYAVVNYQCQSAARDVLGQAMLNMRDAGLLDY---MKLPIHDEIV 570 Query: 755644 VDVHPEEIDSVTQIVTEEMG-SAFELDVPLDVNVGTGTSW 755760 + + + + M F + V D ++G G SW Sbjct: 571 FSAPKADAKDIAREFEKCMTMDLFGVPVVADADLG-GRSW 609 >ref|NP_852553.1|hypothetical protein Length = 264 Score = 67.8 bits (164), Expect = 3e-09 Identities = 52/214 (24%), Positives = 100/214 (46%), Gaps = 8/214 (3%) Frame = +3 Query: 297789 DLSKMPHLLVAGATGAGKSSFVNSMITSIMMRATPDEVRMILVDPKR--VELTIYEGIPH 297962 D K PH+++ G T GK+ F+ ++T+++ A P+ + L+D K +E + + G+ Sbjct: 12 DFDKTPHMVLGGLTRMGKTVFMKVLLTTLI-EANPENAHVYLIDLKEKGLEFSEFSGLKQ 70 Query: 297963 LITPIITNPKKAAEALEWVVREMDARYDDLANFGFKHINEFNKAVR------EGRVEVPA 298124 ++ + + +KA L+ ++++++ R + G+K+I E + R EG V PA Sbjct: 71 VVE-VSDSVEKAHHVLKQIMKKIEERGKFMKENGYKNIVETKEKDRYFVIVDEGAVLAPA 129 Query: 298125 GSERXXXXXXXXXXXXDELADLMMVAPRDVEASIQRITQLARAAGIHLVLATQRPSVDVV 298304 L + + + + I ++ G L+LATQ P+V + Sbjct: 130 KG----------------LPRHINKIREECQYMLSYIATVSGGLGFRLILATQYPTVTSI 173 Query: 298305 TGLIKANVPSRLAFATSSLADSRVVLDQPGAEKL 298406 ++K ++L F + S VVLD+ G E L Sbjct: 174 PSVVKQMSDAKLGFRLPTYKASEVVLDESGLETL 207 >ref|NP_051002.1|hypothetical protein Length = 460 Score = 67.4 bits (163), Expect = 3e-09 Identities = 106/469 (22%), Positives = 193/469 (41%), Gaps = 27/469 (5%) Frame = -2 Query: 324323 TLRPYQQEGFSWLAALWSSGLGGILADDMGLGKTLQALSLFTHIKNTTANASPILVVAPT 324144 T RPYQ + L + S + MG+GKT L+ ++ + + P LV+AP Sbjct: 5 TPRPYQHLIINHLLDIKRSNVWA----GMGMGKTAATLTALENLYLSGSETKPTLVLAPL 60 Query: 324143 SV-MSTWRAEAEKFA--PGLRVTTISATEKKRKTALALEIEDADLVITSYAILRLDAQAF 323973 V STW EA K++ + V I + K R AL V + +D Sbjct: 61 RVAQSTWPDEALKWSHLRNIEVQPIIGSAKARIAALKNTHASVFTVNYDNLVWLVDILG- 119 Query: 323972 RSIQWDTFVLDEAQFVKN--------RTAKVHTAAKGIQARFRLAITGTPMENSLTDLWS 323817 + + T + DE+ +K+ RTA + A R+ + +TGTP N L DLW Sbjct: 120 DTWPFGTIIADESTRLKSFRLRKGGKRTAALAKIAHKSVHRW-VNLTGTPSPNGLMDLWG 178 Query: 323816 LYSITSPGLLPG------IEKFRREIVLPIESGESPEGMALLRRRIRPFMKRRNKELVAA 323655 G G ++ + I LP + E + +I + L AA Sbjct: 179 QAWFVDQGERLGRTYNAFTSRWFKRIQLPGQQWSRFEPLGFAHLQIPLALSDVTLSLDAA 238 Query: 323654 ---DLPPKQEQILSVELSSKHRDLYNTVLQKERKKLLGLINDMDRNRFAIFRSLTLLRML 323484 D+ +++VEL +K R Y+ + E++ L L A +++ +L++ Sbjct: 239 DWFDIDEPIHNVINVELPAKARAHYHAM---EKELFLELGESAIEALNAAAKTIKILQIA 295 Query: 323483 AIDPYLIDEK-YEAIGSSKLSALFSHLDDIIAEGHRTIIFSQFTSFLSRVGEQLDHRNIN 323307 + Y D + + I +K+ AL S +++ + G ++ + L R+ + Sbjct: 296 SGAIYSDDNRNWTEIHDAKIQALESIVNE--SGGTPVLVAYHWKHDLERLLKAFPKGK-- 351 Query: 323306 YCYLDGSTRNRGAVIDDFRAGEAPIFLISLKAGGFGLTLTEADYVFL-LDPWWNPAVEAQ 323130 LD + R + D+ G+ P+ + G GL L + + + WW+ Q Sbjct: 352 --NLDANPR----TLTDWNNGKIPLLFAHPASCGHGLNLQDGGNILVFFSHWWDLEQYQQ 405 Query: 323129 AVD-----RAHRIGQTKNVMVYRMVSEKTIEEKVLALQERKAQLFDSLV 322998 ++ R + G + V ++ +V++ T++E V+ + K + D L+ Sbjct: 406 IIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVMERRNSKRAIQDLLL 454 >ref|NP_049621.1|gp39 topoisomerase II, large subunit, N-terminal region Length = 516 Score = 67.0 bits (162), Expect = 5e-09 Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 23/140 (16%) Frame = +3 Query: 571890 LSVLSGLEAVRKRPGMYIGTTDSR-----------------GLMHCLWEIIDNAVDEALG 572018 + +LS +E ++KR GMYIG++ + GL+ + EIIDN+VDE + Sbjct: 6 IKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDEGIR 65 Query: 572019 G---FGKSILIELEPDGSVAVTDSGRGIP-VDIEPKTG--LTGVEVVLTKLHAGGKFGGS 572180 F I + ++ + V V D+GRGIP ++ TG + G T AGG FG Sbjct: 66 TKFKFANKINVTIK-NNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFGDD 124 Query: 572181 SYAASGGLHGVGASVVNALS 572240 +GG++GVG+S+ N S Sbjct: 125 KERVTGGMNGVGSSLTNIFS 144 Score = 51.2 bits (121), Expect = 3e-04 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 3/136 (2%) Frame = +3 Query: 573060 QIVAKTVERQLGDILSSTKRAEKQQAAVLMEKVVAELKSRISARTHKENQRRKTALEAS- 573236 Q+ AK + R DIL++ A+LM + A L +++A E + K A +A Sbjct: 346 QLDAKKISR---DILNNE--------AILMPIIEAALARKLAAEKAAETKAAKKASKAKV 394 Query: 573237 --SLPAKLYDCRDNGVENTELFIVEGDSAMGTAKAARNSDHQALFPIRGKILNVQKASLS 573410 + A L C + +T LF+ EGDSA+G R+ + +P+RGK+LN S + Sbjct: 395 HKHIKANL--CGKDA--DTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNSWGMSYA 450 Query: 573411 DMLANVECAALIQVIG 573458 DML N E + + G Sbjct: 451 DMLKNKELFDICAITG 466 >ref|NP_640280.1|DNA polymerase Length = 661 Score = 66.6 bits (161), Expect = 6e-09 Identities = 106/421 (25%), Positives = 180/421 (42%), Gaps = 29/421 (6%) Frame = +1 Query: 754585 LVPVLARMELAGIAVDEAGLSGLIDEFTKQ-ANASAELAYEAIGHEVNLGSPKQLQTVLF 754761 L PVLA +EL G+ +D+ + D +++ A A+L G N S Q+Q ++ Sbjct: 210 LSPVLADIELNGVHLDKERVCEEHDIASRRMAEVEADLMDMIDGR--NPRSVPQMQEFIY 267 Query: 754762 DELDM-PKTKRTKTGYTTDAEALA-ELFIKTEHPFLQHLLAYR----DSTKLKQTVVGLL 754923 D L P KR T E L E K + FL + D +K G++ Sbjct: 268 DVLKFKPLKKRGVEWRPTGEEVLQFEARTKKQQAFLDLKKEFAQLNADLSKNLDYFYGVV 327 Query: 754924 KTVAEDGRIHTTYQQTVAATGRLSS--------LDPNLQNIPVRTESGRRIREIFIADPH 755079 T ED + + Q T RLSS + P ++I ++ S R+ + ++ A Sbjct: 328 -TEREDCLFYAQFNQAQTVTHRLSSSGIKTKFEMYPKAKSIQLQN-SPRKYKRLYSA--R 383 Query: 755080 VDDARLLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRS 755259 D ++ D +QIE R+ ++ D + Q DG D+H + S + +EV R+ Sbjct: 384 NPDWYVIEMDGAQIEFRVAGYIGQDTRICQDIVDGVDVHRFTASVLNHCDEEEVTKDQRT 443 Query: 755260 KVKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQARANGYT 755439 K ++ +YG YG Q+A + +Y + A +D+L +++ T Sbjct: 444 DAKPDTFKPLYG-GQYGTDDQMAY----YEAFRNKYQDITQAQQDWLMKVLRNKEITHPT 498 Query: 755440 ETIMGRRRYLP-ALHSDRRQLRDMAERAALNAPIQGSA-ADIMKIAMLKVSDRLGDHK-- 755607 G Y P A S +D + N P+Q A A+I+ IA++ + + K Sbjct: 499 ----GITFYYPNASMSSSGYCQDFP--SVCNYPVQNLATAEIIPIALVAIWHVMKAMKLQ 552 Query: 755608 STVLLQVHDEIIVDVHPEEIDSVTQI--------VTEEMGSAFEL--DVPLDVNVGTGTS 755757 S ++ VHD +I + +E++ + +I V E + ++L +VPL V T Sbjct: 553 SFLVNTVHDSVISESPRDELELMYEISKWAFLWWVYEFLDICYDLQFNVPLGVGYQAHTH 612 Query: 755758 W 755760 W Sbjct: 613 W 613 >ref|YP_024988.1|superfamily II DNA Length = 489 Score = 66.6 bits (161), Expect = 6e-09 Identities = 106/425 (24%), Positives = 175/425 (41%), Gaps = 32/425 (7%) Frame = +3 Query: 367698 LLLCPMSLIGNWEAEVARFAPSLRILVYYGSARPRGDAFDAALAESD-------LVITTY 367856 L++ P + WE EV +P I + S GD ES+ LVI Sbjct: 65 LVIVPTPIKPVWEWEVRDMSPVPSIAHVHDSG---GDKETMRFIESEHEDKLKYLVIGVE 121 Query: 367857 ATASRDIAELERIGWVR-----VVLDEAQVIKNR-LSQTTKAIR-RLNGGQKIALTGTPV 368015 A + EL + +VR VV+DE+ IKN ++T KAIR + ++ LTGTP+ Sbjct: 122 ALSQGKAHELA-LAFVRKHNALVVVDESSRIKNADAARTKKAIRCGDSAAYRMILTGTPI 180 Query: 368016 ENRLSELWSIMDFVNPGMLGTPEKFRERFVRPI------EVRADEERAHRLRRITRPYIL 368177 + +L+ F+ ++G F R + I + +R L PY+ Sbjct: 181 TQGIIDLFGQFRFLGEHIIGLKSFFVFRNMYCIMGGFQGKKVLGYQREEELMDKIAPYVY 240 Query: 368178 RRTKTDPRIIDDLPEKIEIKQHYRLTVEQASLYQSVVAEMMG--RIEESSGIERRGLVLA 368351 + KT+ DLPEK+ + +TV S + E+ E+ + VL Sbjct: 241 QVKKTE---CLDLPEKV----YRSITVSPTKEQLSAMKELKDFFETEQDGDVLTVSTVLD 293 Query: 368352 AMTKLKQVCNHPAHLLHDGSAIGQR--SGKLERFEEIMSETLAEGDR---VLCFTQFTDF 368516 MT+ +Q+ L A + SG + + M E +A+ DR V+ + +F Sbjct: 294 RMTRFQQILGGNFPFLDKDGAYDVKPISGPNPKM-DAMLEDIADLDRNAKVIIWARFRAE 352 Query: 368517 GEMLVPHLAAKF--DTDVAYLAGSTSKQRRTQIVKDFQEPDGPKIFVLSLKAGGTGLNLT 368690 E + L + D+ + Y G + R+ I + D + FV + + G G+ LT Sbjct: 353 IEQISKRLREVYGDDSVIEYHGGISESDRKASIPRFQDSSDPSRFFVANQQTAGMGITLT 412 Query: 368691 AANQVVHLDRWWNPAVENQATDRAFRIGQKRRVQVRKFIGI---GTLEERIDAILEEKKE 368861 A + ++ Q+ DR R GQ+ V +I I + + L+ KK+ Sbjct: 413 IATFAYYYSNSFSLEQRLQSEDRNHRKGQR---NVCTYIDIWCKADADLMVGRALKSKKD 469 Query: 368862 LADMV 368876 LA +V Sbjct: 470 LAVLV 474 Score = 65.1 bits (157), Expect = 2e-08 Identities = 101/424 (23%), Positives = 176/424 (41%), Gaps = 36/424 (8%) Frame = -2 Query: 324242 DMGLGKTLQALSLFTHIKNTTANASPILVVAPTSVMSTWRAEAEKFAPGLRVTTISATEK 324063 +MG GKT ++L H N +LV+ PT + W E +P + + + Sbjct: 39 EMGTGKTFTTIALAGHRFNQR-QIDGVLVIVPTPIKPVWEWEVRDMSPVPSIAHVHDSGG 97 Query: 324062 KRKTALALEIEDAD----LVITSYAILRLDAQ----AFRSIQWDTFVLDEAQFVKNR-TA 323910 ++T +E E D LVI A+ + A AF V+DE+ +KN A Sbjct: 98 DKETMRFIESEHEDKLKYLVIGVEALSQGKAHELALAFVRKHNALVVVDESSRIKNADAA 157 Query: 323909 KVHTAAK-GIQARFRLAITGTPMENSLTDLWSLYSITSPGLLPGIEKF----RREIVLPI 323745 + A + G A +R+ +TGTP+ + DL+ + ++ G++ F ++ Sbjct: 158 RTKKAIRCGDSAAYRMILTGTPITQGIIDLFGQFRFLGEHII-GLKSFFVFRNMYCIMGG 216 Query: 323744 ESGESPEGMAL---LRRRIRPFMKRRNKELVAADLPPKQEQILSVELSSKHRDLYNTVLQ 323574 G+ G L +I P++ + K+ DLP K + ++V + + Sbjct: 217 FQGKKVLGYQREEELMDKIAPYV-YQVKKTECLDLPEKVYRSITVSPTKEQLS-----AM 270 Query: 323573 KERKKLLGLINDMDRNRFAIFRSLTLLRMLAID-------PYL-----IDEKYEAIGSSK 323430 KE K D D + S L RM P+L D K + + K Sbjct: 271 KELKDFFETEQDGD----VLTVSTVLDRMTRFQQILGGNFPFLDKDGAYDVKPISGPNPK 326 Query: 323429 LSALFSHLDDIIAEGHRTIIFSQFTSFLSRVGEQL-----DHRNINYCYLDGSTRNRGAV 323265 + A+ + D + + II+++F + + ++ ++L D I Y + S +R A Sbjct: 327 MDAMLEDIAD-LDRNAKVIIWARFRAEIEQISKRLREVYGDDSVIEY-HGGISESDRKAS 384 Query: 323264 IDDFRAGEAP--IFLISLKAGGFGLTLTEADYVFLLDPWWNPAVEAQAVDRAHRIGQTKN 323091 I F+ P F+ + + G G+TLT A + + ++ Q+ DR HR GQ +N Sbjct: 385 IPRFQDSSDPSRFFVANQQTAGMGITLTIATFAYYYSNSFSLEQRLQSEDRNHRKGQ-RN 443 Query: 323090 VMVY 323079 V Y Sbjct: 444 VCTY 447 >ref|YP_024431.1|superfamily II DNA Length = 472 Score = 66.6 bits (161), Expect = 6e-09 Identities = 106/425 (24%), Positives = 175/425 (41%), Gaps = 32/425 (7%) Frame = +3 Query: 367698 LLLCPMSLIGNWEAEVARFAPSLRILVYYGSARPRGDAFDAALAESD-------LVITTY 367856 L++ P + WE EV +P I + S GD ES+ LVI Sbjct: 48 LVIVPTPIKPVWEWEVRDMSPVPSIAHVHDSG---GDKETMRFIESEHEDKLKYLVIGVE 104 Query: 367857 ATASRDIAELERIGWVR-----VVLDEAQVIKNR-LSQTTKAIR-RLNGGQKIALTGTPV 368015 A + EL + +VR VV+DE+ IKN ++T KAIR + ++ LTGTP+ Sbjct: 105 ALSQGKAHELA-LAFVRKHNALVVVDESSRIKNADAARTKKAIRCGDSAAYRMILTGTPI 163 Query: 368016 ENRLSELWSIMDFVNPGMLGTPEKFRERFVRPI------EVRADEERAHRLRRITRPYIL 368177 + +L+ F+ ++G F R + I + +R L PY+ Sbjct: 164 TQGIIDLFGQFRFLGEHIIGLKSFFVFRNMYCIMGGFQGKKVLGYQREEELMDKIAPYVY 223 Query: 368178 RRTKTDPRIIDDLPEKIEIKQHYRLTVEQASLYQSVVAEMMG--RIEESSGIERRGLVLA 368351 + KT+ DLPEK+ + +TV S + E+ E+ + VL Sbjct: 224 QVKKTE---CLDLPEKV----YRSITVSPTKEQLSAMKELKDFFETEQDGDVLTVSTVLD 276 Query: 368352 AMTKLKQVCNHPAHLLHDGSAIGQR--SGKLERFEEIMSETLAEGDR---VLCFTQFTDF 368516 MT+ +Q+ L A + SG + + M E +A+ DR V+ + +F Sbjct: 277 RMTRFQQILGGNFPFLDKDGAYDVKPISGPNPKM-DAMLEDIADLDRNAKVIIWARFRAE 335 Query: 368517 GEMLVPHLAAKF--DTDVAYLAGSTSKQRRTQIVKDFQEPDGPKIFVLSLKAGGTGLNLT 368690 E + L + D+ + Y G + R+ I + D + FV + + G G+ LT Sbjct: 336 IEQISKRLREVYGDDSVIEYHGGISESDRKASIPRFQDSSDPSRFFVANQQTAGMGITLT 395 Query: 368691 AANQVVHLDRWWNPAVENQATDRAFRIGQKRRVQVRKFIGI---GTLEERIDAILEEKKE 368861 A + ++ Q+ DR R GQ+ V +I I + + L+ KK+ Sbjct: 396 IATFAYYYSNSFSLEQRLQSEDRNHRKGQR---NVCTYIDIWCKADADLMVGRALKSKKD 452 Query: 368862 LADMV 368876 LA +V Sbjct: 453 LAVLV 457 Score = 65.1 bits (157), Expect = 2e-08 Identities = 101/424 (23%), Positives = 176/424 (41%), Gaps = 36/424 (8%) Frame = -2 Query: 324242 DMGLGKTLQALSLFTHIKNTTANASPILVVAPTSVMSTWRAEAEKFAPGLRVTTISATEK 324063 +MG GKT ++L H N +LV+ PT + W E +P + + + Sbjct: 22 EMGTGKTFTTIALAGHRFNQR-QIDGVLVIVPTPIKPVWEWEVRDMSPVPSIAHVHDSGG 80 Query: 324062 KRKTALALEIEDAD----LVITSYAILRLDAQ----AFRSIQWDTFVLDEAQFVKNR-TA 323910 ++T +E E D LVI A+ + A AF V+DE+ +KN A Sbjct: 81 DKETMRFIESEHEDKLKYLVIGVEALSQGKAHELALAFVRKHNALVVVDESSRIKNADAA 140 Query: 323909 KVHTAAK-GIQARFRLAITGTPMENSLTDLWSLYSITSPGLLPGIEKF----RREIVLPI 323745 + A + G A +R+ +TGTP+ + DL+ + ++ G++ F ++ Sbjct: 141 RTKKAIRCGDSAAYRMILTGTPITQGIIDLFGQFRFLGEHII-GLKSFFVFRNMYCIMGG 199 Query: 323744 ESGESPEGMAL---LRRRIRPFMKRRNKELVAADLPPKQEQILSVELSSKHRDLYNTVLQ 323574 G+ G L +I P++ + K+ DLP K + ++V + + Sbjct: 200 FQGKKVLGYQREEELMDKIAPYV-YQVKKTECLDLPEKVYRSITVSPTKEQLS-----AM 253 Query: 323573 KERKKLLGLINDMDRNRFAIFRSLTLLRMLAID-------PYL-----IDEKYEAIGSSK 323430 KE K D D + S L RM P+L D K + + K Sbjct: 254 KELKDFFETEQDGD----VLTVSTVLDRMTRFQQILGGNFPFLDKDGAYDVKPISGPNPK 309 Query: 323429 LSALFSHLDDIIAEGHRTIIFSQFTSFLSRVGEQL-----DHRNINYCYLDGSTRNRGAV 323265 + A+ + D + + II+++F + + ++ ++L D I Y + S +R A Sbjct: 310 MDAMLEDIAD-LDRNAKVIIWARFRAEIEQISKRLREVYGDDSVIEY-HGGISESDRKAS 367 Query: 323264 IDDFRAGEAP--IFLISLKAGGFGLTLTEADYVFLLDPWWNPAVEAQAVDRAHRIGQTKN 323091 I F+ P F+ + + G G+TLT A + + ++ Q+ DR HR GQ +N Sbjct: 368 IPRFQDSSDPSRFFVANQQTAGMGITLTIATFAYYYSNSFSLEQRLQSEDRNHRKGQ-RN 426 Query: 323090 VMVY 323079 V Y Sbjct: 427 VCTY 430 >ref|NP_835564.1|hypothetical protein Length = 1509 Score = 66.6 bits (161), Expect = 6e-09 Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 22/199 (11%) Frame = -1 Query: 56454 VKDTSVAIWNGFISWIVGLWNGII----GTAKAVFLGIGTAIITAWNWIKTKTSDVWNAI 56287 +K T IWN W VG G++ G K + I AII + K S +WNA Sbjct: 729 LKGTVQLIWNLIQLWFVGKILGVVRYFGGLLKGLITIIWVAIIGVF---KKSLSAIWNAT 785 Query: 56286 INWIKDTWNKIITTISDAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQ 56107 K + + ++ +KNW+S W IK+ T + + + S + Sbjct: 786 ----KSIFGFLFNSVKSIFTNMKNWLSSTWNNIKSNTVGKAHSLFTGVRSKFTSLWNATK 841 Query: 56106 GKVQQIKNWITNTWNRVKNTT----SNAW-----------SGIKS---AVRNGINGAVNF 55981 +++NW++N WN +K+ T W G+KS +++ I G V+ Sbjct: 842 DIFIKLRNWMSNIWNSIKDNTVGIAGRLWDRVRNIFGSMRDGLKSIIGKIKDHIGGMVDA 901 Query: 55980 VRRLPGRALSALGNIGSKL 55924 V+R + + L +G KL Sbjct: 902 VKRGLNKLIEGLNWVGGKL 920 Score = 42.7 bits (99), Expect = 0.091 Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 19/158 (12%) Frame = -1 Query: 56391 GIIGTAKAVFLGIGTAIITAWNWIKTKTSDVWNAIINWIKDTWNKIITTISDAVNKVKNW 56212 G IG V G+ A A+ +T + V N I +K T++ I I ++ VKN Sbjct: 552 GPIGIVLGVLAGLAVAFTIAYKKSETFRNFV-NGAIESVKQTFSNFIQFIQPFIDSVKNI 610 Query: 56211 ISDAWTMIKTMTAKLW---NGIKMAIARAIVSAVRTVQGKVQQIKNWITN---------- 56071 A + I +W NG +IV A++ + ++ I +I N Sbjct: 611 FKQAISAIVDFAKDIWSQINGFFNENGISIVQALQNICNFIKAIFEFILNFVIKPIMFAI 670 Query: 56070 ------TWNRVKNTTSNAWSGIKSAVRNGINGAVNFVR 55975 W VK + W IK ++ IN + ++ Sbjct: 671 WQVMQFIWPAVKALIVSTWENIKGVIQGAINIILGIIK 708 >ref|NP_061640.1|phi PVL ORF 15 and 16 homologue Length = 1313 Score = 66.6 bits (161), Expect = 6e-09 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 19/189 (10%) Frame = -1 Query: 56433 IWNGFISWIVGLWNGIIGTAKAVFLGIGTAIITAWNWIKTKT-SDVWNAIINWIKDTWNK 56257 IWN W VG G++ + G+ + I + I TK+ S +WNA K + Sbjct: 784 IWNLIQLWFVGKILGVVRYFGGLLKGLISGIWSVIKGIFTKSLSAIWNAT----KSIFGF 839 Query: 56256 IITTISDAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKVQQIKNWI 56077 + ++ +KNW+S W IK+ T + + + S + +++NW+ Sbjct: 840 LFNSVKSIFTNMKNWLSSTWNNIKSNTVGKAHSLFTGVRSKFTSLWNATKDVFTKLRNWM 899 Query: 56076 TNTWNRVKNTT----SNAWS-----------GIKS---AVRNGINGAVNFVRRLPGRALS 55951 +N WN +K+ T W+ G+KS +++ I G V+ V+R + + Sbjct: 900 SNIWNSIKDNTVGIAGRLWNRVRNIFGSMRDGLKSIIGKIKDHIGGMVDAVKRGLNKLIE 959 Query: 55950 ALGNIGSKL 55924 L +G KL Sbjct: 960 GLNWVGGKL 968 Score = 51.2 bits (121), Expect = 3e-04 Identities = 47/242 (19%), Positives = 94/242 (38%), Gaps = 13/242 (5%) Frame = -1 Query: 56763 NILGGLFRMISPLLGLLKVGLMAVGGAMKALW--LTMMANPXXXXXXXXXXXXXXXVWFF 56590 NI G + I+ +LG++KV G + +W + M+ N +WF Sbjct: 739 NIKGVIQGAINIILGIIKVFSSLFTGNWRGVWDGIVMILN-----GTVQLIWNLIQLWFV 793 Query: 56589 TQTETGKKMWSAFMDWL-GQAWEWIKXXXXXXXXXXXXXXXXAWNWVKDTSVAIWNGFIS 56413 + + + + L W IK + ++ ++ +I+ + Sbjct: 794 GKILGVVRYFGGLLKGLISGIWSVIKGIFTKSLSAIWNATKSIFGFLFNSVKSIFTNMKN 853 Query: 56412 WIVGLWNGI----IGTAKAVFLGIGTAIITAWNWIKTKTSDVWNAIINWIKDTWNKIITT 56245 W+ WN I +G A ++F G+ + + WN T DV+ + NW+ + WN I Sbjct: 854 WLSSTWNNIKSNTVGKAHSLFTGVRSKFTSLWN----ATKDVFTKLRNWMSNIWNSIKDN 909 Query: 56244 ISDAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIAR------AIVSAVRTVQGKVQQIKN 56083 ++ W ++ + + +G+K I + +V AV+ K+ + N Sbjct: 910 TVGIAGRL-------WNRVRNIFGSMRDGLKSIIGKIKDHIGGMVDAVKRGLNKLIEGLN 962 Query: 56082 WI 56077 W+ Sbjct: 963 WV 964 >ref|NP_817817.1|gp56 Length = 609 Score = 66.6 bits (161), Expect = 6e-09 Identities = 122/510 (23%), Positives = 197/510 (38%), Gaps = 40/510 (7%) Frame = +1 Query: 754240 RSKTLILHSSKTQIKA-WRSLGLDVDDVA--GDTALAAYLLVPDQRSYELQQIALERAGI 754410 R+ L+ H++ + W +D ++ DT L A PD L + LE + Sbjct: 95 RASKLVFHNASFDVPPLWHHGLIDAGEIRKIADTVLLARFAYPDSYGPPLPRKTLEACAV 154 Query: 754411 ELSDAESDSGQLAL---------------DLESDQTAQTHGHRA--AALLEVHDILAAKI 754539 L +G + ++ D G A A L + +L K Sbjct: 155 HLLGLVDVAGGMERAFKAAGFKTIQDGYENMNIDAPIYRQGAMADTVATLLLEPVLRRKC 214 Query: 754540 DEANMSQVYRDI----ELPLVPVLARMELA----------GIAVDEAGLSGLID-EFTKQ 754674 E S + + E + VL E+A G+AVD L + E K+ Sbjct: 215 VEWTTSHPFAEFGATTEAEALEVLEVQEIAHWVMLQRSARGLAVDRDYLDEYREREHDKR 274 Query: 754675 ANASAELAYEAIGHEVNLGSPKQLQTVLFDELDMPKT-KRTKTGYTTDAEALAELFIKTE 754851 +A LA + E G L L ++P RT G + A+ E + Sbjct: 275 LEHAAFLAQYDL--EGGTGKGPALVKWLEARGELPSDWPRTPKGAPSAAKEHLETL---D 329 Query: 754852 HPFLQHLLAYRDSTKLKQTVVGLLKTVAEDGRIHTTYQQTVA-ATGRLSSLDPNLQNIPV 755028 HP A S K+ + + + A GR H A ATGR+S P LQ P Sbjct: 330 HPVAAAQRALAQSDKVLGYLEKVSRQAAVTGRCHPQVAILGASATGRMSYGSPELQQFP- 388 Query: 755029 RTESGRRIREIFIADPHVDDARLLTA-DYSQIEMRIMAHLSGDAALIQAFKDGE-DLHSY 755202 + R I VDD + LT+ D++QIE MA ++GD + F + + DL+ Sbjct: 389 -----KDARPII-----VDDGQGLTSVDWAQIEPVTMALMAGDREFLAPFFENDADLYEP 438 Query: 755203 VGSKVFGVGIDEVDSAMRSKVKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFG 755382 + + GID R K + +YG A ++R++ + A + Q Sbjct: 439 I---MRACGID------RPMAKVILLATMYGQGARSMARRIGHTEESAAQIRRQMLAAMP 489 Query: 755383 AVKDYLDEIVEQARANGYTETIMGRRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIM 755562 A +D++ ++ A +G + G R LP + A+N QGSA D++ Sbjct: 490 ASRDFMAKVESIAITHG--RIVTGGGRILP--------VDQQGSYRAVNYICQGSAYDVL 539 Query: 755563 KIAMLKVSDR-LGDHKSTVLLQVHDEIIVD 755649 ++++ + L H V L +HDE++VD Sbjct: 540 AHTIVRLDEAGLSGH---VQLAMHDELVVD 566 >ref|NP_612994.1|hypothetical protein Length = 348 Score = 66.2 bits (160), Expect = 8e-09 Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 6/242 (2%) Frame = -2 Query: 527675 RGGMAMVYRGTDLRLDREIAIKVMHEHLISDETFVERFRREAINAGRLTHPNLVAIHDQS 527496 +G + VY D L ++ IK + + + T + + EA + HPN+V + + Sbjct: 21 QGCFSKVYLAHDRHLAHDLVIKEIEK---KENTNHDDYFNEARLLYKHAHPNIVQVQYAA 77 Query: 527495 RDGDTVYLVMEHLPSVTLRRELKHRGTFTPRQXXXXXXXXXXXXXXVHSTGIIHRDLKPD 527316 + +Y+ M + +L + +K + T R+ +HS G++H D+KP+ Sbjct: 78 QCESNIYIAMPFYHNGSLNQLMK-KNNLTSREIIRYSIQFLSGLYHIHSKGLMHFDIKPN 136 Query: 527315 NVLLGTDAQVKLADFGLARAVXXXXXXXXXXXTVGYVAPELVTRAGAD--IRTDLYTVGI 527142 N+++ + L+DFGL++ V +V PE + + D D+Y G+ Sbjct: 137 NIMISNRNEAMLSDFGLSQLVNEESRAAPEFGYHFHVPPEYFSLSTNDYNFTYDIYQAGL 196 Query: 527141 MFYEMLTGKQPYTDEVPIQVAYRHVHDSVPPPSDQITGLSPRLDALVLWATSK----DPN 526974 Y M G + E + +S+ + P + ++ +K DPN Sbjct: 197 TIYRMCVGHDNFERERSAFSTIEQLRESIINGCYPLKEYPPHIHKKLITIVNKCIHVDPN 256 Query: 526973 DR 526968 +R Sbjct: 257 ER 258 >ref|NP_049482.1|serine Length = 348 Score = 66.2 bits (160), Expect = 8e-09 Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 6/242 (2%) Frame = -2 Query: 527675 RGGMAMVYRGTDLRLDREIAIKVMHEHLISDETFVERFRREAINAGRLTHPNLVAIHDQS 527496 +G + VY D L ++ IK + + + T + + EA + HPN+V + + Sbjct: 21 QGCFSKVYLAHDRHLAHDLVIKEIEK---KENTNHDDYFNEARLLYKHAHPNIVQVQYAA 77 Query: 527495 RDGDTVYLVMEHLPSVTLRRELKHRGTFTPRQXXXXXXXXXXXXXXVHSTGIIHRDLKPD 527316 + +Y+ M + +L + +K + T R+ +HS G++H D+KP+ Sbjct: 78 QCESNIYIAMPFYHNGSLNQLMK-KNNLTSREIIRYSIQFLSGLYHIHSKGLMHFDIKPN 136 Query: 527315 NVLLGTDAQVKLADFGLARAVXXXXXXXXXXXTVGYVAPELVTRAGAD--IRTDLYTVGI 527142 N+++ + L+DFGL++ V +V PE + + D D+Y G+ Sbjct: 137 NIMISNRNEAMLSDFGLSQLVNEESRAAPEFGYHFHVPPEYFSLSTNDYNFTYDIYQAGL 196 Query: 527141 MFYEMLTGKQPYTDEVPIQVAYRHVHDSVPPPSDQITGLSPRLDALVLWATSK----DPN 526974 Y M G + E + +S+ + P + ++ +K DPN Sbjct: 197 TIYRMCVGHDNFERERSAFSTIEQLRESIINGCYPLKEYPPHIHKKLITIVNKCIHVDPN 256 Query: 526973 DR 526968 +R Sbjct: 257 ER 258 >ref|NP_803396.1|tail length tape measure protein Length = 1550 Score = 65.9 bits (159), Expect = 1e-08 Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 19/196 (9%) Frame = -1 Query: 56454 VKDTSVAIWNGFISWIVGLWNGIIGTAKAVFLGIGTAIITAWNWIKTKT-SDVWNAIINW 56278 +K T IWN W VG G++ + G+ + I I TK+ S +WNA Sbjct: 777 LKGTVQLIWNLIQLWFVGKILGVVRYFGGLLKGLISGIWGVIKGIFTKSLSAIWNAT--- 833 Query: 56277 IKDTWNKIITTISDAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKV 56098 K + + ++ +KNW+S W IK+ T + + + S + Sbjct: 834 -KSIFGFLYNSVKSIFTNMKNWLSSTWNNIKSNTVGKAHSLFTGVRSKFTSLWNATKDIF 892 Query: 56097 QQIKNWITNTWNRVKNTT---------------SNAWSGIKS---AVRNGINGAVNFVRR 55972 +++NW++N WN +K+ T N G+KS +++ I G V+ +++ Sbjct: 893 TKLRNWMSNIWNSIKDNTVGIAGRLWDKVRNIFGNMRDGLKSIIGKIKDHIGGMVDAIKK 952 Query: 55971 LPGRALSALGNIGSKL 55924 + + L +G KL Sbjct: 953 GLNKLIEGLNWVGGKL 968 Score = 40.8 bits (94), Expect = 0.35 Identities = 55/259 (21%), Positives = 96/259 (37%), Gaps = 18/259 (6%) Frame = -1 Query: 56436 AIWNGFISWIVGLWNGIIGTAKAVFLGIGTAIITAWNWIKTKTSD-VWNAIINWIKDTWN 56260 + W S I I G KA F I II + + +W A+ I TW Sbjct: 679 SFWKENGSEITQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWE 738 Query: 56259 KIITTISDAVNKV------------KNW--ISDAWTMIKTMTAKL-WNGIKMAIARAIVS 56125 I I A+N + NW + D MI T +L WN I++ I+ Sbjct: 739 NIKGVIQGAINIILGIIKVFSSLFTGNWRGVWDGIVMILKGTVQLIWNLIQLWFVGKILG 798 Query: 56124 AVRTVQGKVQQIKNWITNTWNRVKNTTSNAWSGIKSAVRNGINGAVNFVRRLPGRALSAL 55945 VR G +K I+ W +K + + S I +A ++ N V+ + + L Sbjct: 799 VVRYFGG---LLKGLISGIWGVIKGIFTKSLSAIWNATKSIFGFLYNSVKSIFTNMKNWL 855 Query: 55944 GNIGSKLYNSGKAMIDGFKDGIXXXXXXXXXXVKDGLSRIRNFFP--FSPAKEGPFSGKG 55771 + + + ++ G+ KD +++RN+ ++ K+ G Sbjct: 856 SSTWNNIKSNTVGKAHSLFTGVRSKFTSLWNATKDIFTKLRNWMSNIWNSIKDNTVGIAG 915 Query: 55770 WTWYSGQSMSEGLADGMAS 55714 W +++ + DG+ S Sbjct: 916 RLWDKVRNIFGNMRDGLKS 934 >ref|NP_058454.1|orf 16 Length = 539 Score = 65.9 bits (159), Expect = 1e-08 Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 18/195 (9%) Frame = -1 Query: 56454 VKDTSVAIWNGFISWIVGLWNGIIGTAKAVFLGIGTAIITAWNWIKTKTSDVWNAIINWI 56275 +K T IWN W VG G++ + G+ + I W IK + +AI N Sbjct: 3 LKGTVQLIWNLIQLWFVGKILGVVRYFGGLLKGLISGI---WGVIKGIFTKSLSAIWNTT 59 Query: 56274 KDTWNKIITTISDAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKVQ 56095 K + + ++ +KNW+S W IK+ T + + + S + Sbjct: 60 KSIFGFLYNSVKSIFTNMKNWLSSTWNNIKSNTVGKAHSLFTGVRSKFTSLWNATKDIFT 119 Query: 56094 QIKNWITNTWN---------------RVKNTTSNAWSGIKS---AVRNGINGAVNFVRRL 55969 +++NW++N WN RV+N + G+KS +++ I G V+ V+R Sbjct: 120 KLRNWMSNIWNSIKDNTVGIAGCLWDRVRNIFGSMPDGLKSIIGKIKDHIGGMVDAVKRG 179 Query: 55968 PGRALSALGNIGSKL 55924 + + L +G KL Sbjct: 180 LNKLIEGLNWVGGKL 194 >ref|NP_076801.1|integrase Length = 382 Score = 65.9 bits (159), Expect = 1e-08 Identities = 85/333 (25%), Positives = 149/333 (44%), Gaps = 16/333 (4%) Frame = +1 Query: 66127 GKHRARARFRD-FTGKTRQVEA-YGASGAKAERQLLANLRSRVESA-GDTISGNTTVSSL 66297 GK++ R+RD T K ++V +A++ A L ++ES ++ + N + + Sbjct: 9 GKYKYFERYRDPLTEKLKKVSVTLDKKTPRAQKVAQAELLEKIESKINNSSTSNAKFTDI 68 Query: 66298 GKIWTGNLGKSDEHTEQTIERYESIVEKIIGPALGEYLIMEATVSRVDGFLRALADKTPG 66477 + W KS + + +I +S II E I T + F+ AD Sbjct: 69 AEEWWSFYKKSIK--QSSISALQSSFNFIIDYFDKEIKISNVTSKVIQKFIND-ADCPRS 125 Query: 66478 RAKTTKSVLKSMFDLAVRHDALRTNPVREVRLPTKRKKPVQALTIDEVGTLREGLRKWQA 66657 + + +KS L +FD AV + + NP R+ +LP K+ + V+ L + L + K Sbjct: 126 KLERSKSTLNLIFDYAVDLEYIEYNPARKAKLP-KKIQTVKDLEKIQNKYLEQNELKALL 184 Query: 66658 ADGVKGP-TRSTELLDVVDLMLGTGMRIGEVLALRWSDVDLGEHPRLTVSGTLVPIKEKG 66834 ++ P TR LL + M G R+GE +AL+ + E ++ + GTL K G Sbjct: 185 SELYSRPNTRRLALL--AEFMSLNGCRMGEAIALKKENYKRSER-KIDIHGTL--DKTVG 239 Query: 66835 LRRQAHT--KTASGFRVLTLPAFVVEVL--------LRRSVESIPTETNAVFPSGAGTWK 66984 + T KTAS FR + L +E+L L +SV + E +F S G Sbjct: 240 YSKGVKTTPKTASSFRTVDLSDREIEILDEIIEQNNLSKSVINDYNEMGYIFVSKRGIPL 299 Query: 66985 WPNNYRRALRAALKEMEN--TSGITPHVFRKSV 67077 N++ A++ A +++ ++ H+FR ++ Sbjct: 300 QTNSFNLAIKRANSRLKSPINKNLSSHIFRHTL 332 Score = 45.4 bits (106), Expect = 0.014 Identities = 54/276 (19%), Positives = 108/276 (39%), Gaps = 27/276 (9%) Frame = +3 Query: 221907 ELQVSDIDLNDLRSWLITLDDAGAAKSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTP 222086 E+++S++ ++ ++ +DA +S + R + + F Y V+ + NPA + + P Sbjct: 102 EIKISNVTSKVIQKFI---NDADCPRSKLERSKSTLNLIFDYAVDLEYIEYNPARKAKLP 158 Query: 222087 KKDSRLPTVLKPQQAADLVSRQRTVHTEADNSDPIEATKWVRDAAILEMLYATAVRVSEL 222266 KK + TV ++ + Q + +A S+ R A + E + R+ E Sbjct: 159 KK---IQTVKDLEKIQNKYLEQNEL--KALLSELYSRPNTRRLALLAEFMSLNGCRMGEA 213 Query: 222267 TGLNRGDVDHQRSMITVLGKGNKERRVPYGKPAQTALQKWLSLRDTFASESSGDAL---- 222434 L + + I + G ++ V Y K +T + S R S+ + L Sbjct: 214 IALKKENYKRSERKIDI--HGTLDKTVGYSKGVKTTPKTASSFRTVDLSDREIEILDEII 271 Query: 222435 -------------------FLGVRGGRIGARQVRELVHRYGA--ADPSAPDIGPHGLRHS 222551 F+ RG + + R + P ++ H RH+ Sbjct: 272 EQNNLSKSVINDYNEMGYIFVSKRGIPLQTNSFNLAIKRANSRLKSPINKNLSSHIFRHT 331 Query: 222552 AATHMLDGGADLRQIQELLGHST--MSSTQIYTHVS 222653 +++ + L+ I + +GH ++T IYTHV+ Sbjct: 332 LISYLAENNVPLKAIVDRVGHKDGGKTTTAIYTHVT 367 >ref|NP_076663.1|dUTPase Length = 139 Score = 65.9 bits (159), Expect = 1e-08 Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 3/142 (2%) Frame = +2 Query: 585626 KLLDAGITPPSYAHASDAGADLCSAIDFVLEPFERKVVPTGIAIALPIGTAGFVHPRSGL 585805 K L+ T P A AG D+ ++ ++P E K+V TG+A+ L ++ RS Sbjct: 6 KKLNGNATIPERATEHSAGYDISASETVTIQPDEIKMVSTGLAVQLGHDEVLKLYDRSSN 65 Query: 585806 SSKHGVTVINAPGTIDAGYRG-EIKVPLINLDARTPVRISRGDRIAQLVIQEIKQADFTL 585982 K G+ +IN+ G ID+ Y E K +N+ ++ PV IS+G RI Q V + D Sbjct: 66 PVKRGIALINSVGIIDSDYYPQEFKGLFMNI-SKEPVTISKGQRIMQGVFVKYLTTD--- 121 Query: 585983 VESLDDSDRG--AGGFGSTGGV 586042 DD+ G GGFGSTG V Sbjct: 122 ----DDNANGKRTGGFGSTGEV 139 >ref|NP_795465.1|putative ClpP protease ATP-dependent protease proteolytic subunit Length = 221 Score = 65.5 bits (158), Expect = 1e-08 Identities = 41/150 (27%), Positives = 78/150 (52%), Gaps = 1/150 (0%) Frame = -1 Query: 1103142 AICAQMMLLAAEDPDADISLYINSPGGSVTAGMAIYDTMQYIKPDVSTVAMGMAASMGQF 1102963 A+ A+ ++ + ++DI L +NS GG VT G IY ++ K V+ GMAAS Sbjct: 27 AVSAKSIIEKLPEDNSDIVLEVNSNGGLVTVGSEIYTALRNYKGKVTAEITGMAASAASV 86 Query: 1102962 LLSSGAPGKRYATPHARILMHQPL-GGIGGTATDIKIQAELILHMKKQMAELTAEQTGKT 1102786 + K +P A++++H+ L + G + D+ + + K + +TGK+ Sbjct: 87 AVMGA--DKVVMSPTAQMMVHKALFNWVAGNSDDLDKASNALKSSDKAIVNAYVAKTGKS 144 Query: 1102785 LEQILKDNDRDHWFTAEEALEYGFIDKMVT 1102696 ++I+ + + +A+EA+E GF D+++T Sbjct: 145 EDEIMDLMRNETFMSAQEAVENGFADEVMT 174 >ref|NP_108702.1|dUTPase Length = 139 Score = 65.5 bits (158), Expect = 1e-08 Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 3/142 (2%) Frame = +2 Query: 585626 KLLDAGITPPSYAHASDAGADLCSAIDFVLEPFERKVVPTGIAIALPIGTAGFVHPRSGL 585805 K L+ T P A AG D+ ++ ++P E K+V TG+A+ L ++ RS Sbjct: 6 KKLNENATIPERATKHSAGYDISASETVTIQPDEIKMVSTGLAVQLGDDEVLKLYDRSSN 65 Query: 585806 SSKHGVTVINAPGTIDAGYRG-EIKVPLINLDARTPVRISRGDRIAQLVIQEIKQADFTL 585982 K G+ +IN+ G ID+ Y E K +N+ ++ PV IS+G RI Q V + D Sbjct: 66 PVKRGIALINSVGIIDSDYYPQEFKGLFMNI-SKEPVTISKGQRIMQGVFVKYLTTD--- 121 Query: 585983 VESLDDSDRG--AGGFGSTGGV 586042 DD+ G GGFGSTG V Sbjct: 122 ----DDNANGKRTGGFGSTGEV 139 >ref|NP_996693.1|dUTPase Length = 141 Score = 65.5 bits (158), Expect = 1e-08 Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 3/142 (2%) Frame = +2 Query: 585626 KLLDAGITPPSYAHASDAGADLCSAIDFVLEPFERKVVPTGIAIALPIGTAGFVHPRSGL 585805 K L+ T P A AG D+ ++ ++P E K+V TG+A+ L ++ RS Sbjct: 6 KKLNENATIPERATEHSAGYDISASETVTIQPDEIKMVSTGLAVQLGDDEVLKLYDRSSN 65 Query: 585806 SSKHGVTVINAPGTIDAGYRG-EIKVPLINLDARTPVRISRGDRIAQLVIQEIKQADFTL 585982 K G+ +IN+ G ID+ Y E K +N+ ++ PV IS+G RI Q V + D Sbjct: 66 PVKRGIALINSVGIIDSDYYPQEFKGLFMNI-SKEPVTISKGQRIMQGVFVKYLTTD--- 121 Query: 585983 VESLDDSDRG--AGGFGSTGGV 586042 DD+ G GGFGSTG V Sbjct: 122 ----DDNANGKRTGGFGSTGEV 139 >ref|NP_076600.1|dUTPase Length = 139 Score = 65.5 bits (158), Expect = 1e-08 Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 3/142 (2%) Frame = +2 Query: 585626 KLLDAGITPPSYAHASDAGADLCSAIDFVLEPFERKVVPTGIAIALPIGTAGFVHPRSGL 585805 K LD T P A AG D+ ++ ++P E K+V TG+A+ L ++ RS Sbjct: 6 KKLDENATIPERATEHSAGYDISASETVTIQPDEIKMVSTGLAVQLGDDEVLKLYDRSSN 65 Query: 585806 SSKHGVTVINAPGTIDAGYRG-EIKVPLINLDARTPVRISRGDRIAQLVIQEIKQADFTL 585982 K G+ +IN+ G ID+ Y E K +N+ ++ PV IS+G RI Q V + + Sbjct: 66 PVKRGIALINSVGIIDSDYYPQEFKGLFMNI-SKEPVTISKGQRIMQGVFVKYLTTN--- 121 Query: 585983 VESLDDSDRG--AGGFGSTGGV 586042 DD+ G GGFGSTG V Sbjct: 122 ----DDNANGKRTGGFGSTGEV 139 >ref|YP_024453.1|putative PhoH-related protein Length = 246 Score = 64.7 bits (156), Expect = 2e-08 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 14/180 (7%) Frame = +3 Query: 665718 NHTITFGIGPAGTGKTYLAMAMAINALQHKEVSRIILTRPAVEAGESLGYLPGTLNEKID 665897 N I + AGTGKT ++A A +K + + P E LG PG EK Sbjct: 50 NVEILWNESQAGTGKTMCSVACAYADYLNKNRKLVFIISPV---SEDLGSRPGNQTEKEM 106 Query: 665898 PYVRPLYDALHDM-VDPE---SIPLLIETGTIE-------VAPLA--YMRGRTLNDAFII 666038 Y L+DAL ++ ++PE + L++E E V+ ++ ++RG L DA II Sbjct: 107 AYFMGLHDALIELNMNPEQQITEMLMMEDNVKEDKLGDCWVSQISHLFLRGGNLRDATII 166 Query: 666039 LDEAQNTTGEQMKMFLTRLGF-GARMVVTGDVSQIDLPGKTRSGLNVVQDILTGIEDLKF 666215 ++EAQN ++K LTR+ + ++V G+ QIDL +++SG + E F Sbjct: 167 INEAQNFKRSELKKVLTRVHTKNSTVIVEGNFKQIDLKNESKSGFGDYMEYFKNYEGAVF 226 Score = 55.1 bits (131), Expect = 2e-05 Identities = 48/208 (23%), Positives = 93/208 (44%), Gaps = 13/208 (6%) Frame = -1 Query: 1358652 SAEQRVAIDMLLDDALGIVSLGGRAGTGKSALALMAGLQKVLEENKHSKIMVFRPIYAVG 1358473 + EQ + +D + I+ +AGTGK+ ++ L +N+ + + P+ Sbjct: 36 TTEQLDFCEDFFNDNVEILWNESQAGTGKTMCSVACAYADYLNKNR-KLVFIISPV---- 90 Query: 1358472 GQSLGFLPGSEGEKMNPWAEAVFDTLGAL-------------VSKNVIEEVMNRDLLDVL 1358332 + LG PG++ EK + + D L L + NV E+ + + + Sbjct: 91 SEDLGSRPGNQTEKEMAYFMGLHDALIELNMNPEQQITEMLMMEDNVKEDKLGDCWVSQI 150 Query: 1358331 PLTHIRGRSLHDAFVIVDEAQSLERNVLLTVLSRIGMNSKVVLTHDVAQRDNLRVGRHDG 1358152 +RG +L DA +I++EAQ+ +R+ L VL+R+ + V+ ++ +L+ G Sbjct: 151 SHLFLRGGNLRDATIIINEAQNFKRSELKKVLTRVHTKNSTVIVEGNFKQIDLKNESKSG 210 Query: 1358151 VAAVIEKLKGHELFAHVTLTRSERSEIA 1358068 +E K +E T + RS++A Sbjct: 211 FGDYMEYFKNYEGAVFHNFTVNFRSKLA 238 >ref|NP_899256.1|UvsX Length = 366 Score = 64.7 bits (156), Expect = 2e-08 Identities = 62/256 (24%), Positives = 106/256 (41%), Gaps = 18/256 (7%) Frame = +1 Query: 301762 GGLPRGRVVEIYGPESSGKTTVALHAVANAQKT--GGIAAFIDAEHALDPEYAKKLGVDT 301935 GGL G V + GP K+ + L VA K + FID E + P Y + GVD Sbjct: 49 GGLTSGLTV-LAGPSKHFKSNLGLVGVAAYLKKYPDAVCVFIDTEFGITPSYLRSQGVDP 107 Query: 301936 DQLLVSQPDTGEQ-----ALEIADMLIRSGALD--------VIVIDSVAALVPKAEIEGE 302076 D++L Q ++ E+ A ++ D+ R A + IDSV + EI+ Sbjct: 108 DRVLHIQCESVERMKFEMANQLKDLAERKRAKKAGEEPDRVIFFIDSVGNVASAKEIDDA 167 Query: 302077 MGDSHVG--LQARLMSQALRKIAGALSQSKTTAIFINQLREKVGVFFGSPETTSGGKALK 302250 + V +A+ + R I + I IN + ++ S SGG + Sbjct: 168 QNEKSVADMSRAKQLKSLFRIITPYFTMLDIPCIAINHTYQTQEIY--SKTVMSGGTGIM 225 Query: 302251 FYASVRIDVRRIETLKEGQDAVGNRTRAKIVKNKIAPPFKQAEFDIIYGQGISREGSLID 302430 + A I + + + K+G+D +G I K++ + + Y GI L+D Sbjct: 226 YSADTVIILGK-QQEKDGKDIIGYHFIMNIEKSRFVKEKMKVPLTVTYENGIDPFSGLLD 284 Query: 302431 MGVDNG-IIRKSGSWF 302475 + + G +++ S W+ Sbjct: 285 IALQTGHVVKPSNGWY 300 >ref|NP_818577.1|gp39 Length = 351 Score = 64.3 bits (155), Expect = 3e-08 Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 6/161 (3%) Frame = -3 Query: 1426300 AADHKKELGKATGKEHDV--KGVAGARAQ--TYEKGNVYWSKKTGAYHLTGAIKNSFK-- 1426139 A D ++ K GK V K A + + +E G +YWS TGA+ + + ++ Sbjct: 192 AIDEHAKVAKWLGKRITVPEKPTADGKGRWAEFENGTIYWSANTGAFAVPKHLLETYTAL 251 Query: 1426138 GDVVTQLGLPTSQEKGGLKDGGSAQSFQKGKIYWSKDTGAHYTTGTLLKYWGDKGTIKGH 1425959 G +LG P + + DGG Q+FQ G +Y G H G + + G G Sbjct: 252 GWEQGELGYPIAPH-AVIPDGGDVQAFQNGVLYRKYGQGGHVIKGAIGNRYRLNGWEAGF 310 Query: 1425958 LGYPESDPVYKDGRGEQLFEGARLVWAEGYGTTEFSPTGTI 1425836 LG+P S + G Q FEG R+ FSP GTI Sbjct: 311 LGWPTSSEIKHGGMIYQTFEGGRIA---------FSPDGTI 342 >ref|NP_758949.1|ORF58 Length = 210 Score = 63.9 bits (154), Expect = 4e-08 Identities = 61/207 (29%), Positives = 89/207 (42%), Gaps = 2/207 (0%) Frame = +3 Query: 488916 ARIIAMVNQKGGVGKTTSSINLGASLAAYGRKMLLVDFDPQGALSVGLGVNPYDLEISVY 489095 A++IA++NQKGG GKTT S N+ + L A G K+LLVD DPQG+ Sbjct: 20 AKLIAILNQKGGAGKTTISTNVASQLHADGHKVLLVDLDPQGS----------------- 62 Query: 489096 NLLMNSRLDPHEVIVGTDFDNIDILPANIDLSAAEVQLVGEVAREQILSRVLSKVADEYD 489275 TD+ A A V +G+ I KVA Y+ Sbjct: 63 ---------------ATDWSE----QAEEGSEAVPVIRMGKTCTCDI-----HKVASGYE 98 Query: 489276 -VILIDCQPSLGLLTVNALTAAHGVIIPLETEFFALRGVALLVETIEKIQDRLNPSLVVD 489452 ++ +D P + L A+ AA V+IP + + A LVE ++ Q+ V D Sbjct: 99 YLVSVDGAPQVADLAATAVRAADMVLIPTQPSPYDCWSAAELVEIVKARQE------VTD 152 Query: 489453 GI-LATMFDSRTLHSKEVMSRVTEAFD 489530 GI A SR + ++ + + EA D Sbjct: 153 GIPKAAFIISRAIKRTKLEAEIKEALD 179 >ref|NP_852561.1|DNA integration Length = 369 Score = 63.9 bits (154), Expect = 4e-08 Identities = 63/262 (24%), Positives = 109/262 (41%), Gaps = 7/262 (2%) Frame = +1 Query: 66163 TGKTRQVEAYGASGAKAERQLLANLRSRVESAGDTI---SGNTTVSSLGKIWTGNLGKSD 66333 TGK RQ SG K ++ A++ ++ + T+ W S Sbjct: 24 TGKRRQK---WFSGYKTRKEAQADVAKKITELNEGTFIEPSKVTLKDYLNHWLEIKSMSI 80 Query: 66334 EHTEQTIERYESIVEKIIGPALGEYLIMEATVSRVDGFLRALADKTPGRAKTT----KSV 66501 E + T Y++ + + + P++G + + V + + DK G A + + Sbjct: 81 E--KSTFAGYKAFINQHVIPSIGMVTLHKLNVIHIQKCYKTAIDK--GIANNSILLMHRI 136 Query: 66502 LKSMFDLAVRHDALRTNPVREVRLPTKRKKPVQALTIDEVGTLREGLRKWQAADGVKGPT 66681 LKS +LAV+ + + NP +P K K P+Q T +EV ++ + G Sbjct: 137 LKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAHSQESRYHIGYL--- 193 Query: 66682 RSTELLDVVDLMLGTGMRIGEVLALRWSDVDLGEHPRLTVSGTLVPIKEKGLRRQAHTKT 66861 L + TGMR+GEVL LRW D+D +H TV+ + +++ A KT Sbjct: 194 ----------LAITTGMRLGEVLGLRWQDIDFEKH---TVTINQTSGHDNKIKKTA--KT 238 Query: 66862 ASGFRVLTLPAFVVEVLLRRSV 66927 S R + +P + L + + Sbjct: 239 NSSKRTIPVPNETIAALKKHKI 260 Score = 48.1 bits (113), Expect = 0.002 Identities = 67/261 (25%), Positives = 104/261 (39%), Gaps = 23/261 (8%) Frame = +3 Query: 221958 TLDDAGAAKSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTPKKDSRLPTVLKPQQAAD 222137 T D G A +++ +KS V Q+ +S NPA PKK+ P Q Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKT------PIQT-- 170 Query: 222138 LVSRQRTVHTEADNSDPIEATKWVRDAAILEMLYATAVRVSELTGLNRGDVDHQRSMITV 222317 TE + + ++ R + T +R+ E+ GL D+D ++ +T+ Sbjct: 171 --------WTEEEVKKFLAHSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTI 222 Query: 222318 ---LGKGNK----------ERRVPYGKPAQTALQKWLSLRDT----FASESSGDALFLGV 222446 G NK +R +P AL+K L + F S L Sbjct: 223 NQTSGHDNKIKKTAKTNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCN 282 Query: 222447 RGGRIGAR-----QVRELVHRYGAADPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLG 222611 GRI R + H+ G + I H LRH+ AT +L G + + I E LG Sbjct: 283 EFGRIIKRAHFRKSFIRMTHKVGIKE-----IKFHDLRHTHATLLLKQGVNPKIISERLG 337 Query: 222612 HSTMSST-QIYTHVSMQRLQE 222671 H+ +S T +Y+HV + +QE Sbjct: 338 HTDISMTLSVYSHV-LPNMQE 357 >ref|NP_813764.1|putative DNA polymerase Length = 709 Score = 63.5 bits (153), Expect = 5e-08 Identities = 76/323 (23%), Positives = 126/323 (39%), Gaps = 41/323 (12%) Frame = +1 Query: 754921 LKTVAEDGRIHTTYQQTVAATGRLSSLDPNLQNIPVRTES-GRRIREIFIADPHVDDAR- 755094 +K V EDG +H + A TGR + PN+ +P + + G R +F A H R Sbjct: 389 IKLVGEDGAMHGSINPNGAGTGRATHAYPNMGQVPSASATYGPHCRALFGA-THAKKRRG 447 Query: 755095 -----LLTADYSQIEMRIMAHLSG---DAALIQAFKDGEDLHSYVGSKVFGVGIDEVD-- 755244 + D S +E+R + H + +G D+H G + DE D Sbjct: 448 WEKVVQVGTDASGLELRCLGHYGAPFDEGRYADTVLNG-DIHWVNGKAAGIIKFDERDKH 506 Query: 755245 ----SAMRSKVKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKD----YL 755400 +R K Y +YG + + G E K L + + E A+ Sbjct: 507 NEEHERVRGIAKTFIYAFLYGAGDELVGSFVGGGKKEGKALKKDFMENTPAISGLQGAIA 566 Query: 755401 DEIVEQARANGYTE--TIMGRRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIAM 755574 D+++ + + N T I +RR+L L D R++ + +ALN +Q + A I K + Sbjct: 567 DQLITEQKWNQATRRFDIKWKRRWLRGL--DGRKIHVRSPHSALNFLLQSAGAIICKKWV 624 Query: 755575 LKVSDRLGDHKS---------------TVLLQVHDEIIVDVHPEEI----DSVTQIVTEE 755697 ++V L + + VHDE+ + EI V Q E Sbjct: 625 VEVERILMEEHGLYHGWYKDDGTPGDFCYMAWVHDELQIAARTPEIAEIVAKVAQQAIRE 684 Query: 755698 MGSAFELDVPLDVNVGTGTSWHD 755766 +G +F+ LD + G +W + Sbjct: 685 VGESFQFRCQLDTDYKIGATWRE 707 >ref|NP_663658.1|putative dUTPase Length = 139 Score = 63.5 bits (153), Expect = 5e-08 Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 3/133 (2%) Frame = +2 Query: 585653 PSYAHASDAGADLCSAIDFVLEPFERKVVPTGIAIALPIGTAGFVHPRSGLSSKHGVTVI 585832 P A AG D+ S+ ++P E K+V TG+A+ L ++ RS K G+ +I Sbjct: 15 PERATKHSAGYDISSSETVTIQPDEIKMVSTGLAVQLGDDEVLKLYDRSSNPVKRGIALI 74 Query: 585833 NAPGTIDAGYRG-EIKVPLINLDARTPVRISRGDRIAQLVIQEIKQADFTLVESLDDSDR 586009 N+ G ID+ Y E K +N+ ++ PV IS+G RI Q V + D DD+ Sbjct: 75 NSVGIIDSDYYPQEFKGLFMNI-SKEPVTISKGQRIMQGVFVKYLTTD-------DDNAN 126 Query: 586010 G--AGGFGSTGGV 586042 G GGFGSTG V Sbjct: 127 GKRTGGFGSTGEV 139 >ref|NP_112684.1|DUT Length = 139 Score = 63.5 bits (153), Expect = 5e-08 Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 3/142 (2%) Frame = +2 Query: 585626 KLLDAGITPPSYAHASDAGADLCSAIDFVLEPFERKVVPTGIAIALPIGTAGFVHPRSGL 585805 K L+ T P A AG D+ ++ ++P E K+V TG+A+ L ++ RS Sbjct: 6 KKLNENATIPERATEHSAGYDISASETVTIQPDEIKMVSTGLAVQLGDDEVLKLYDRSSN 65 Query: 585806 SSKHGVTVINAPGTIDAGYRG-EIKVPLINLDARTPVRISRGDRIAQLVIQEIKQADFTL 585982 K G+ +IN+ G ID+ Y E K +N+ ++ PV IS+G RI Q V + + Sbjct: 66 PVKRGIALINSVGIIDSDYYPQEFKGLFMNI-SKEPVTISKGQRIMQGVFVKYLTTN--- 121 Query: 585983 VESLDDSDRG--AGGFGSTGGV 586042 DD+ G GGFGSTG V Sbjct: 122 ----DDNANGKRTGGFGSTGEV 139 >ref|NP_695048.1|dUTPase Length = 139 Score = 63.5 bits (153), Expect = 5e-08 Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 3/142 (2%) Frame = +2 Query: 585626 KLLDAGITPPSYAHASDAGADLCSAIDFVLEPFERKVVPTGIAIALPIGTAGFVHPRSGL 585805 K L+ T P A AG D+ ++ ++P E K+V TG+A+ L ++ RS Sbjct: 6 KKLNENATIPERATEHSAGYDISASETVTIQPDEIKMVSTGLAVQLGDDEVLKLYDRSSN 65 Query: 585806 SSKHGVTVINAPGTIDAGYRG-EIKVPLINLDARTPVRISRGDRIAQLVIQEIKQADFTL 585982 K G+ +IN+ G ID+ Y E K +N+ ++ PV IS+G RI Q V + + Sbjct: 66 PVKRGIALINSVGIIDSDYYPQEFKGLFMNI-SKEPVTISKGQRIMQGVFVKYLTTN--- 121 Query: 585983 VESLDDSDRG--AGGFGSTGGV 586042 DD+ G GGFGSTG V Sbjct: 122 ----DDNANGKRTGGFGSTGEV 139 >ref|NP_817811.1|gp50 Length = 571 Score = 62.4 bits (150), Expect = 1e-07 Identities = 82/371 (22%), Positives = 142/371 (38%), Gaps = 11/371 (2%) Frame = -1 Query: 379518 WHQSECRGVVEAVTGAGKTMIGITAAFEAFRQGIKVLVLVPTAELQSQWQRRLM---ETL 379348 W R V TGAGK+ + A A+R G +V+ L AEL Q +R ++ T+ Sbjct: 27 WESGTKRTGVVLPTGAGKSTVIGKLASNAYRSGKRVVALAHRAELLFQMRRDMLAVDPTI 86 Query: 379347 PQADVGTLGNGRRDSLGACDILVAIINSATRAELLKEHSDG---LLIADECHRYAAKSFS 379177 P +D+G + D + + T A + ++ G +++ DE H A+ F Sbjct: 87 PASDIGIVMAEHDDHHAP----IVFASLQTLAHAKRRNALGRRDVILWDEFHHAGAEGFH 142 Query: 379176 KALRS----DFRYRLGLTATYQRPDKANTAVLDPYFGGVVFQMWYERALRDGVIAEFDIA 379009 Y G TAT R +K + G V+ ++ YE+ LR + F Sbjct: 143 ATFEELGGYTHAYLCGFTATMYRNEKGTIGL-----GDVIQKVSYEKDLRWAIKHGF--- 194 Query: 379008 FVGIGLTDSERGEYQVASSAISKLGMSLKNKLNLQEASFDQFMVAIQTFAKKKNDPSPIV 378829 + G +++ K NL + D F K ++ + ++ Sbjct: 195 -------------------LVQPRGKTVRIK-NLDK--LDDVRTVAGDF--KNDELAEVM 230 Query: 378828 FMARKY-LDAVVKRQQVLTNAKNKMKILEGIAPVIAESKGSLIFSQTVDSSSQAALLLQR 378652 A +Y +DA+ + TN ++F+ +VD + A + Sbjct: 231 EAAVEYVVDAIELHARERTN---------------------IVFAASVDGAHMIADAINE 269 Query: 378651 AGIETKAVSSASKPHERRGAMQQFANGFAKVLCAPRILDEGIDVPDSDLAVVLSGSKQPR 378472 G+ +AV+ + ER ++ G K L +L EG D P D V+ ++ Sbjct: 270 RGMTAEAVTGSMPHAEREQVYDRYRTGVTKNLVTVMVLTEGADFPMCDTVVMARPTRSKN 329 Query: 378471 QTIQRLGRIIR 378439 Q +GR +R Sbjct: 330 LYAQMVGRALR 340 >ref|NP_944246.1|putative single-strand DNA binding protein Length = 169 Score = 62.4 bits (150), Expect = 1e-07 Identities = 33/86 (38%), Positives = 48/86 (55%) Frame = -3 Query: 1140922 SIIPINLSGTVAADPQSRTLPSGRACASFRLAVNHWRLDKGTGEYLSDTTSWFSVDCYGP 1140743 S+ + L G + ADP+ R LPSG A A+ RLA DK +G+ + + T W V +G Sbjct: 3 SVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGD-IKEATEWHRVSFFGR 61 Query: 1140742 LASNCSMSLHQGMSVVVQGTLKIREW 1140665 LA L +G SV ++G +K R+W Sbjct: 62 LAEIVDEHLRKGASVYIEGRIKTRKW 87 >ref|NP_061501.1|ClpP protease Length = 296 Score = 62.0 bits (149), Expect = 1e-07 Identities = 37/131 (28%), Positives = 69/131 (52%) Frame = -1 Query: 1103100 DADISLYINSPGGSVTAGMAIYDTMQYIKPDVSTVAMGMAASMGQFLLSSGAPGKRYATP 1102921 D D+++ INSPGG V G+AIY+ ++ K V+ +G+AAS F+ +G + Sbjct: 77 DVDVTVNINSPGGDVFEGLAIYNLLREHKGKVTVNIIGLAASAASFIAMAG--DEIRIGR 134 Query: 1102920 HARILMHQPLGGIGGTATDIKIQAELILHMKKQMAELTAEQTGKTLEQILKDNDRDHWFT 1102741 A +++H G D++ A+ + +A++ A++T ++ I+K D + W Sbjct: 135 AAFLMIHNAWLIAMGNRNDLREIADWLEPFDMTLADIYAQRTEIDIDDIVKQMDAETWIG 194 Query: 1102740 AEEALEYGFID 1102708 EA++ G+ D Sbjct: 195 GREAVDKGWAD 205 >ref|NP_943831.1|gp53 Length = 559 Score = 62.0 bits (149), Expect = 1e-07 Identities = 90/387 (23%), Positives = 156/387 (40%), Gaps = 16/387 (4%) Frame = -1 Query: 379542 WQAEALDA----WHQSECRGVVEAVTGAGK-TMIGITAAFEAFRQGIKVLVLVPTAELQS 379378 +Q EA++A W Q R V TG GK T+IG TA ++ VL++ EL Sbjct: 4 YQREAVEAIESHWSQGVTRVGVVLPTGTGKSTVIGRTAV-NGYQNREPVLMVAHRGELID 62 Query: 379377 QWQRRLME---TLPQADVGTLGNGRRDSLGACDILVAIINSATRAELLKEHSDGL---LI 379216 Q + E ++P++ VG + D + I+VA + + A + + G ++ Sbjct: 63 QMAGTIFEVDPSIPRSHVGIVRAEMDDH--SAPIVVATLQTLATAH--RREAVGFRRRIL 118 Query: 379215 ADECHRYAAKSFSKALRSDFRYR----LGLTATYQRPDKANTAVLDPYFGGVVFQMWYER 379048 DE H A+ F Y G TAT +R DK + V G V+ ++ YE+ Sbjct: 119 WDEVHHAGAEGFHTTFTELGGYTDALFAGFTATMRRDDKGKSPV---GLGDVIEKVVYEK 175 Query: 379047 ALRDGVIAEFDIAFVGIGLTDSERGEYQVASSAISKLGMSLK-NKLNLQEASFDQFMVAI 378871 ++ D ++ + G++++ N LN + D Sbjct: 176 ----DILWAIDSGYL------------------VRPRGLTVRINNLN----ALDDVRTVA 209 Query: 378870 QTFAKKKNDPSPIVFMARKYLDAVVKRQQVLTNAKNKMKILEGIAPVIAESKGSLIFSQT 378691 F +++D + ++ A +Y+ +K A + +IF+ + Sbjct: 210 GDF--QQSDLAEVMEAATEYVVDAIKLH--------------------AADRRPIIFAAS 247 Query: 378690 VDSSSQAALLLQRAGIETKAVSSASKPHERRGAMQQFANGFAKVLCAPRILDEGIDVPDS 378511 VD++ A L A AV+ + ER+ + + NG AK L ++L EG D P Sbjct: 248 VDAAHHIADALTAADFPAVAVTGSMSYAERQPVYEAYRNGTAKALVTVQVLTEGADFPMC 307 Query: 378510 DLAVVLSGSKQPRQTIQRLGRIIRRKD 378430 D V+ ++ Q +GR +R D Sbjct: 308 DCVVLARPTRSRNLYSQMIGRALRLYD 334 >ref|YP_003936.1|hypothetical protein Length = 522 Score = 62.0 bits (149), Expect = 1e-07 Identities = 82/378 (21%), Positives = 145/378 (38%), Gaps = 8/378 (2%) Frame = -3 Query: 62758 WPEPTPLHQKPAVPTFPIDSL--PPVIADYVTTLAEATQTPIDMPASVALGSLAACVAGR 62585 W +P ++ FP+ SL ++ +Y AE+ Q P+ + +G ++A + G+ Sbjct: 41 WQDPIDINS--GNDKFPLISLGGDNLVFEYAKAKAESVQFPVSSAYAHFIGCISAAMLGK 98 Query: 62584 ATVQPSTGWTEPLCLYVVTAMEPGNRKSAVFSAITSPIREVEKELIETARPMXXXXXXXX 62405 VQ G +P LY+V + P KSA+ SA +P+R + L E + Sbjct: 99 FWVQYH-GEEQPTALYMVISQPPSTGKSAINSAAITPMRAEIQRLNEERK-------KER 150 Query: 62404 XXXEGNLGRFKKAAIGKPSAENEAEYLQAARELAEFSVPVLPRILA-DDATPEAIGSIAA 62228 L + +K P A + +L E + + A D TPE + +AA Sbjct: 151 IRLTSQLRQIEKEIKNDPKGNTTAALYEDKEKLEEKIKKMADIVFAVSDPTPEGLAKVAA 210 Query: 62227 SQGGRLAIAAAEGGIFDIFAGRY--SSGISNLEVLLRGHAGDSFTVDRKGRESEHIDSLT 62054 QG I+ I + Y S SN E++L+ + V R +++ Sbjct: 211 VQGHFSVISDEATAINTLLGLTYGGSDKKSNSELILKAWDKNHMEVARSNQDNNLSLCPV 270 Query: 62053 LTFVLTVQPSVLRQIGQTSVEKSRGELERFLYAVPDSLVGYRTI---DPVPVPEDVAGRY 61883 + + Q ++ I + ++ G ERFL + L+G R + + + ++V Sbjct: 271 GSICVIAQDETIKGI-MDAGQRGIGVSERFLLVREEPLLGTRILCDENGDALYKEVDRGL 329 Query: 61882 QDRMRTLARTFAPDDHTTFLRFDQDARVRFAEVQAKNERRLRQDGALGSLRIKGWGSKLS 61703 + L +D+ L ++A + E G ++G K Sbjct: 330 VSKYYRLVHNIMKEDNVV-LSVSRNAMRELNLARQAMEPDFAAGGKYSHSMLRGHLGKFD 388 Query: 61702 GAVARIAGILHLADGREG 61649 RIA +LH EG Sbjct: 389 KHALRIASVLHTIKNWEG 406 >ref|NP_852540.1|hypothetical protein Length = 1215 Score = 62.0 bits (149), Expect = 1e-07 Identities = 71/293 (24%), Positives = 123/293 (41%), Gaps = 12/293 (4%) Frame = -1 Query: 56424 GFISWIVGLWNGIIGTAKAVFLGIGTAIITAWNWIKTKTSDVWNAIINWIKDTWNKIITT 56245 G I+ +G+ II +V G + AWN +K TS V + I N I+ N I Sbjct: 912 GVITSAIGIITNIIKLFTSVLKGDWSG---AWNAVKGITSSVMSLIGNIIQGAINLISAV 968 Query: 56244 ISDAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKVQQIKNWITNTW 56065 ++ +N VK+ S + I ++ + +++GI +++S+V G + I++ W Sbjct: 969 VTGGLNLVKSIFSSVLSAIGSLVSSIFSGIG-----SVISSVMNAAGSI------ISSIW 1017 Query: 56064 NRVKNTTSNAWSGIKSAVRNGINGAVNFVRRLPGRALSALGNIGSKLYNSGKAMIDGFKD 55885 N K+ TSN +N N V ++ G S L G L + GK M+ G + Sbjct: 1018 NAAKSATSNI-----------LNSIYNTVTQIFGNVKSFLS--GIDLGSIGKNMMQGLLN 1064 Query: 55884 GIXXXXXXXXXXVKDGLSRIRNFFPFSPAKEGPFSGKGWTWYSGQSMSEGLADGMASGTS 55705 GI + D + I++ + P + + + G +M +G +G+ + Sbjct: 1065 GISSMAGAIWDKITDIGNGIKDKISGLLSIHSP--SRWFRDFIGVNMMKGWINGIDAMKG 1122 Query: 55704 DVVRQSEAL---MKAAAFDAPSIPGMTR---------PSSSASGLDEDTGPTS 55582 V R +E + MK A ++ GM R P +S+ D T S Sbjct: 1123 AVQRTTEQMTEWMKPEALQVETVYGMPRGLGAYQTAKPQTSSGNTDAGTASNS 1175 >ref|YP_077209.1|thymidylate synthase Length = 257 Score = 61.2 bits (147), Expect = 2e-07 Identities = 53/203 (26%), Positives = 94/203 (46%) Frame = +3 Query: 156738 SPDAEDLLEFSGRMCYRSWEPGLNPNVSRVRTDSAQYLGNVIASQHGSVLEHANFTFVLH 156917 SPD E ++ + +M RS + + ++ + I + SVLEH+ +TF + Sbjct: 9 SPDGEKVVAIAAKMS-RSRKGWDYHEKEMTDEEIETWIRDAILHGYWSVLEHSVYTFSIE 67 Query: 156918 NVSRVLTHELIRHRAGSAFSQESLRYVRLADIPFWFPEWAREDSELMERSLKVLDTLEEH 157097 +SRV +H+L+RHR S ++Q S R+ R D ++ P ++ S+K D E Sbjct: 68 GISRVASHQLVRHRIAS-YTQMSHRFARPID-EYYKP--------IIPISIKKRDVHELV 117 Query: 157098 QKWMTEHFELDEASTKFSHKKHMTSFMRRFAPEGLATGIVYTANLRSLRHVIEMRTAKGA 157277 K +E+ K + ++ P + T IV T N R L + +R A Sbjct: 118 NKAYNNAYEIYYELLKSGIPEEDARYV---LPNAVNTNIVVTMNARELYNFFSLRLCSRA 174 Query: 157278 EEEIRLVFNKIGEAMREEAPAIF 157346 + EIR + ++ E +++ P +F Sbjct: 175 QWEIRAIAWRMLEEVKKVHPRLF 197 >ref|NP_817400.1|gp62 Length = 164 Score = 61.2 bits (147), Expect = 2e-07 Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 2/75 (2%) Frame = -1 Query: 1418859 AEDGELSWQDQALCAQTDPEAFFPEKGG--STREAKRVCASCDVRSDCLEYALANDERFG 1418686 AE W+ +A+C D + +F + G + A+R+C +C V++ CL++AL ++E G Sbjct: 10 AEVHTSDWRSRAICTHKDGDIWFLNESGHYTADPARRICWTCPVQAPCLKFALQHNEA-G 68 Query: 1418685 IWGGMSERERRRLKK 1418641 +WGG SE+ER R+K+ Sbjct: 69 VWGGFSEKERARIKR 83 Score = 52.0 bits (123), Expect = 2e-04 Identities = 27/68 (39%), Positives = 41/68 (60%) Frame = +3 Query: 1373187 TMDWRHRAACLNEDPELFFPIGNTGPALLQIEEAKTVCRRCEVVETCLQWALESGQDAGV 1373366 T DWR RA C ++D +++F + +G + A+ +C C V CL++AL+ +AGV Sbjct: 14 TSDWRSRAICTHKDGDIWF-LNESGH--YTADPARRICWTCPVQAPCLKFALQH-NEAGV 69 Query: 1373367 WGGLSEDE 1373390 WGG SE E Sbjct: 70 WGGFSEKE 77 >ref|NP_943839.1|gp61 Length = 619 Score = 60.8 bits (146), Expect = 3e-07 Identities = 93/351 (26%), Positives = 147/351 (41%), Gaps = 8/351 (2%) Frame = +1 Query: 754618 GIAVDEAGLSGLIDEFT-KQANASAELAYEAIGHEVNLGSPKQLQTVLFDELDMPKT-KR 754791 GI VD L +++ +QA +A+LA A G + G +L L D ++P+ R Sbjct: 265 GINVDREYLDRYLNQVADEQAIYTADLA--AHGLDGGTGKGAKLVQYLADLGELPQPWPR 322 Query: 754792 TKTGYT----TDAEALAELFIKTEHPFLQHLLAYRDSTKLKQTVVGLLKTVAEDGRIHTT 754959 T G D E LAE+ +P + L+ + K + + A GR H Sbjct: 323 TPKGALRATKADLEYLAEI-----NPLAKAQLSLANIEKTLGYLTKVSTQAAVTGRCHPQ 377 Query: 754960 YQQTVA-ATGRLSSLDPNLQNIPVRTESGRRIREIFIADPHVDDARLLTA-DYSQIEMRI 755133 A ATGR+S P LQ P + R I DD LT+ D+SQIE Sbjct: 378 VATLGASATGRMSYGSPELQQFP------KDARPILC-----DDGDGLTSIDWSQIEPVT 426 Query: 755134 MAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSKVKAMSYGLVYGLSAYGL 755313 MA+++ D + A++ GEDL+ G + GID R K + +YG L Sbjct: 427 MANMARDIDFLAAYEAGEDLY---GPIMLAAGID------RPTSKVVLLSSMYGSGIAKL 477 Query: 755314 SRQLAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQARANGYTETIMGRRRYLPALHSDRR 755493 + + + + Q F ++ ++ E A G T G R LP Sbjct: 478 AALIGHTEESTAQIKRQMFAAMKRSAKWMVKVEEVAAQFGRVITAGG--RILP------- 528 Query: 755494 QLRDMAERAALNAPIQGSAADIMKIAMLKVSDRLGDHKSTVLLQVHDEIIV 755646 + + A+N +QGSA D++ ++++ R + L +HDE++V Sbjct: 529 -VDEGGIFKAVNYTVQGSAYDVLANTIVEMYRR--GMTDELYLAMHDEVVV 576 >ref|NP_817551.1|gp102 Length = 146 Score = 60.8 bits (146), Expect = 3e-07 Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Frame = -3 Query: 1140916 IPINLSGTVAADPQSRTLPSGRACASFRLAVNHWRLDKGTGEYLSDTTSWFSVDCYGPLA 1140737 + ++L GT+ ADP+ R G+A A+F + N R D G ++ ++ + A Sbjct: 5 LQVHLVGTLTADPELRFTQGGQAVANFTVVSNERRRD-AQGNWVDGDATFLRCTIWRDAA 63 Query: 1140736 SNCSMSLHQGMSVVVQGTLKIREWSTDE--KRGIAPTVVAEHIGPDLRYGTANYQK 1140575 N + SL +G V+V G LK R + T E KR + V E IGP LR+ TA K Sbjct: 64 ENVAESLQKGQRVIVHGYLKQRSFETKEGDKRTVIEVEVDE-IGPSLRWATARVSK 118 >ref|NP_046887.1|gp69 Length = 269 Score = 60.5 bits (145), Expect = 4e-07 Identities = 71/269 (26%), Positives = 113/269 (42%), Gaps = 23/269 (8%) Frame = -3 Query: 846835 SPSRANDFVQCPLKFRFRSIDKLPEPPSQAAFRGTVVHSVLE--KLFELPAARRTQDVAE 846662 S S+ N + +CP+ ++ IDK+ + P+ +GT H+V E +++E T D A+ Sbjct: 10 SVSQINQYTKCPMAYKLARIDKVWQRPAAWLPQGTAFHAVAEAVEVWESYGMPLTLDEAK 69 Query: 846661 SLLRPSWDELVDKDPEVLEIF---------GDEGEKETFFTTAANLLRAYFSLEFPEHLE 846509 + R + V E F + + E +T + +F+ E Sbjct: 70 DMFRWHYANDVGAFTEETPNFEWWTWSGPYNGQRDIERRYTVGLEQVEKFFAWRGTPGQE 129 Query: 846508 ----PEQT---EKYVRTQLDNGLELRGFIDRVDVAPGGEKRLVDYKTGKQPKPQYGREAH 846350 P+ T E Y +LD G+ +RG+ID V V GE R+ DYKTG QP Sbjct: 130 IWVTPDGTPAIELYFEIELD-GILVRGYIDAV-VVVDGELRVRDYKTGNQPGDD------ 181 Query: 846349 FQMGFYALVEYRLTG-ELVHTLQLMYLGSQSILKSHPTMSDIERTQFEIESIWKDIIASA 846173 FQ+G YAL G E T +G + K+ + T++ E+I ++ Sbjct: 182 FQLGVYALAVAMTYGVEAPKTGDYFMVGKKG--KAPKPTKPYDLTKWTREAITEEFHRVE 239 Query: 846172 E---ADRWRPKKSP-LCNWCTFKPLCPAW 846098 E A + P P C +C CP + Sbjct: 240 EGIAASMFDPLPEPDKCKFCDVSYSCPVF 268 >ref|NP_817352.1|gp14 Length = 1188 Score = 60.5 bits (145), Expect = 4e-07 Identities = 71/328 (21%), Positives = 138/328 (42%), Gaps = 27/328 (8%) Frame = -1 Query: 57846 SVDSTKADRGV-SGFVNRMASAAGTATSKWSSVGSTFQNIGSKISNVGGSLTKXXXXXXX 57670 + + A RG S F + + S+ A ++SS S ++ SK V G Sbjct: 88 AANGVSAGRGFGSSFGSSLVSSLPVA-GRFSSALSGYEGAASKAGAVAGRALGTAFTAAA 146 Query: 57669 XXXXXXXXXXXXXGWGRLRSIDSA-------NAQLKGLGYSAKDVENISGQVATALEGGM 57511 G+ R +S+D++ N L+G G + DV + V ++ Sbjct: 147 TGIIGVAAVSLFKGFERYKSLDASRVRLENLNRTLEGTGRAGIDVAAVMKTVNDVVDQTA 206 Query: 57510 MTLGEGTRVAAGGLAAGVEQGKELEKYIGLVDAAAIGMNTSVDETAMIFNRVQGSGKVMT 57331 L + VA L++ +L++++ V AA +NT + F ++ +GKV Sbjct: 207 FGLDQAFNVATVALSSNTG---DLKRFMTAVADAAGYLNTDLQSVGDAFLQIAATGKVSM 263 Query: 57330 EELQMVEQRMPGFSNALQEHIGVASDDEFKKMVTAGEVGSDAFLETMDTFAGDMAKEHAK 57151 ++L + +P + L + + V + E M+ GEVG + + ++ A AK Sbjct: 264 DQLSNQLRGIP--LSWLAKELNV-TGAELSAMMQKGEVGLETLIRAVEKNAAGFAKASGD 320 Query: 57150 SFDGLVDLAKAYVGQIGEAMLGGVF-------EQSKDSIAEFVDWLSD---------PGV 57019 + +G ++ + +IG LG VF + KD++++ L+D G+ Sbjct: 321 TLEGAINNMNFALSRIGANFLGAVFGKPTEDANELKDAVSQLTARLNDVNAWIVAHGDGI 380 Query: 57018 Q---AKAAELGKTIGDVFSKVLGVVKNV 56944 + AAE + + + SK++GV+ ++ Sbjct: 381 KEAFRDAAETAQDLWNAISKIVGVLSDL 408 Score = 45.8 bits (107), Expect = 0.011 Identities = 30/91 (32%), Positives = 44/91 (48%) Frame = +1 Query: 1797046 GYRSGSTSRDPNGHPVGLAVDFMVPLNIDGKALGDDIAKFVIDNHEALNIKYVIWYQRIY 1797225 G G + D G A+D MVP KA+G + + V+ + N+ I+ + Y Sbjct: 810 GLEVGDHAADQYGEHQNGALDIMVP----NKAIGQQVLQQVLSDP---NVYGAIFDRHSY 862 Query: 1797226 NVERADEGWRKMPDRGGDTQNHKDHPHVSFQ 1797318 R +G R M DRG TQNH+DH H ++ Sbjct: 863 GYGRGPQG-RLMEDRGSPTQNHEDHVHALYK 892 Score = 43.5 bits (101), Expect = 0.053 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 5/88 (5%) Frame = +3 Query: 254568 GVRPGSGTSDHY---TGGAVDIMIDGSTADRIAEYLIQNSGALDVKYVIWKQRIWQPGSG 254738 G+ G +D Y GA+DIM+ + + L Q +V I+ + + G G Sbjct: 810 GLEVGDHAADQYGEHQNGALDIMVPNKAIGQ--QVLQQVLSDPNVYGAIFDRHSYGYGRG 867 Query: 254739 WSS--MEDRGSPTDNHMDHVHASFN*SN 254816 MEDRGSPT NH DHVHA + N Sbjct: 868 PQGRLMEDRGSPTQNHEDHVHALYKPGN 895 >ref|NP_861734.1|UvsX RecA-like recombination protein Length = 390 Score = 60.1 bits (144), Expect = 6e-07 Identities = 62/263 (23%), Positives = 107/263 (40%), Gaps = 11/263 (4%) Frame = +1 Query: 301720 IPTGSIALDIALG---IGGLPRGRVVEIYGPESSGKTTVALHAVANAQKT--GGIAAFID 301884 +PT L+IALG GL G + P KT L VA K I F D Sbjct: 32 VPTRIPMLNIALGGALNAGLQSGLTI-FAAPSKHFKTLFGLTMVAAYMKKYKDAICLFYD 90 Query: 301885 AEHALDPEYAKKLGVDTDQLLVSQPDTGEQ-ALEIADML--IRSGALDVIVIDSVAALVP 302055 +E Y + +GVD D+++ + + EQ +++ + L I G +I IDS+ Sbjct: 91 SEFGASESYFRSMGVDLDRVVHTPIQSVEQLKVDMTNQLDAIERGDKVIIFIDSIGNTAS 150 Query: 302056 KAEIEGEMGDSHVG--LQARLMSQALRKIAGALSQSKTTAIFINQLREKVGVFFGSPETT 302229 K E E + + VG +A+ + R + L+ + IN ++G + P+ Sbjct: 151 KKETEDALNEKVVGDMSRAKALKSLFRIVTPYLTIKDIPCVAINHTAMEIGGLY--PKEI 208 Query: 302230 SGGKALKFYASVRIDVRRIETLKEGQDAVGNRTRAKIVKNKIAPPFKQAEFDIIYGQGIS 302409 GG Y++ + +KEG + G K K++ + + GI Sbjct: 209 MGGGTGILYSANTVFFISKRQVKEGTELTGYDFTLKAEKSRTVKEKSTFPITVNFDGGID 268 Query: 302410 REGSLIDMGVDNG-IIRKSGSWF 302475 L++M + G +++ W+ Sbjct: 269 PFSGLLEMATEIGFVVKPKAGWY 291 >ref|NP_818168.1|gp95 Length = 1370 Score = 59.7 bits (143), Expect = 7e-07 Identities = 27/67 (40%), Positives = 40/67 (59%) Frame = +3 Query: 254595 DHYTGGAVDIMIDGSTADRIAEYLIQNSGALDVKYVIWKQRIWQPGSGWSSMEDRGSPTD 254774 +H TG A+D+M + + +Q++ A YV+W+Q+ W P S M DRGSPT+ Sbjct: 473 EHQTGYAIDLMSPTNP-----DKAMQDAFANGANYVLWQQKQWNPDGSISDMPDRGSPTE 527 Query: 254775 NHMDHVH 254795 NH DH+H Sbjct: 528 NHFDHMH 534 Score = 55.8 bits (133), Expect = 1e-05 Identities = 47/146 (32%), Positives = 63/146 (43%) Frame = +1 Query: 1796875 GDKAQAAGSTPEQGEAIAGGTVTAQKKKKLPLGDVKPHVQEAAEVIYDEYDGITGVGGYR 1797054 G A A ST GE G V+ K GD + +Y+ + VGGY Sbjct: 413 GAGASAGASTVSGGELGKPGDVSDASGLK---GDAV-----TLKNLYESEGAGSSVGGY- 463 Query: 1797055 SGSTSRDPNGHPVGLAVDFMVPLNIDGKALGDDIAKFVIDNHEALNIKYVIWYQRIYNVE 1797234 S + + + H G A+D M P N D KA+ D A YV+W Q+ +N Sbjct: 464 SPNVDQPWDEHQTGYAIDLMSPTNPD-KAMQDAFAN---------GANYVLWQQKQWN-- 511 Query: 1797235 RADEGWRKMPDRGGDTQNHKDHPHVS 1797312 D MPDRG T+NH DH H++ Sbjct: 512 -PDGSISDMPDRGSPTENHFDHMHIN 536 >ref|NP_839925.1|putative ClpP protease Length = 235 Score = 59.7 bits (143), Expect = 7e-07 Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 2/148 (1%) Frame = -1 Query: 1103100 DADISLYINSPGGSVTAGMAIYDTMQYIKPDVSTVAMGMAASMGQFLLSSGAPGKRYATP 1102921 D +I L I S GG V A IY ++ V+ G+AAS + +G +P Sbjct: 42 DEEIVLNIASNGGDVFAASEIYTAIKMNGKPVTVNIQGLAASAASVIAMAGDTVN--ISP 99 Query: 1102920 HARILMHQPLGGIGGTATDIKIQAELILHMKKQMAELTAEQTGKTLEQILKDNDRDHWFT 1102741 A++++H+ + G G A D + +A+++ + + +A +TG +L+ + W T Sbjct: 100 TAQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDLLQLMSNETWMT 159 Query: 1102740 AEEALEYGFIDKM--VTRSSDVTDN*VG 1102663 A++A++ GF D + V + V N +G Sbjct: 160 AQDAVDKGFADNIMFVDANKPVFSNSIG 187 >ref|NP_076678.1|protease Length = 235 Score = 59.7 bits (143), Expect = 7e-07 Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 2/148 (1%) Frame = -1 Query: 1103100 DADISLYINSPGGSVTAGMAIYDTMQYIKPDVSTVAMGMAASMGQFLLSSGAPGKRYATP 1102921 D +I L I S GG V A IY ++ V+ G+AAS + +G +P Sbjct: 42 DEEIVLNIASNGGDVFAASEIYTAIKMNGKPVTVNIQGLAASAASVIAMAGDTVN--ISP 99 Query: 1102920 HARILMHQPLGGIGGTATDIKIQAELILHMKKQMAELTAEQTGKTLEQILKDNDRDHWFT 1102741 A++++H+ + G G A D + +A+++ + + +A +TG +L+ + W T Sbjct: 100 TAQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDLLQLMSNETWMT 159 Query: 1102740 AEEALEYGFIDKM--VTRSSDVTDN*VG 1102663 A++A++ GF D + V + V N +G Sbjct: 160 AQDAVDKGFADNIMFVDANKPVFSNSIG 187 >ref|NP_818038.1|gp65 Length = 164 Score = 59.3 bits (142), Expect = 9e-07 Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 2/68 (2%) Frame = -1 Query: 1418838 WQDQALCAQTDPEAFFPEKGGS--TREAKRVCASCDVRSDCLEYALANDERFGIWGGMSE 1418665 W+ +ALC D + +F + G A+++C C V+ CL++AL ++E G+WGG SE Sbjct: 17 WRRKALCTHEDGDIWFLNESGHYVNDAARKICWECPVQPQCLQWALKHNE-LGVWGGFSE 75 Query: 1418664 RERRRLKK 1418641 +ER+R+K+ Sbjct: 76 KERQRIKR 83 Score = 55.1 bits (131), Expect = 2e-05 Identities = 28/68 (41%), Positives = 41/68 (60%) Frame = +3 Query: 1373187 TMDWRHRAACLNEDPELFFPIGNTGPALLQIEEAKTVCRRCEVVETCLQWALESGQDAGV 1373366 T DWR +A C +ED +++F + +G + + A+ +C C V CLQWAL+ + GV Sbjct: 14 TDDWRRKALCTHEDGDIWF-LNESGHYVN--DAARKICWECPVQPQCLQWALKH-NELGV 69 Query: 1373367 WGGLSEDE 1373390 WGG SE E Sbjct: 70 WGGFSEKE 77 >ref|NP_891595.1|UvsX Length = 356 Score = 59.3 bits (142), Expect = 9e-07 Identities = 60/240 (25%), Positives = 104/240 (43%), Gaps = 13/240 (5%) Frame = +1 Query: 301798 GPESSGKTTVALHAVANAQKTGGIAA--FIDAEHALDPEYAKKLGVDTDQLL-VSQPDTG 301968 GP K+ + L V+ K AA F D+E + Y + +GVD D+++ V + Sbjct: 59 GPSKHFKSNMGLTCVSAYMKQNPDAACLFFDSEFGITSAYLESMGVDPDRVVHVPIKNIE 118 Query: 301969 EQALEIADMLIRSGALD--VIVIDSVAALVPKAEIEGEMGDSHVG--LQARLMSQALRKI 302136 E EI + L + D +I IDS+ L K E+E + + +A+ + R + Sbjct: 119 ELKFEIMNQLEQITREDKVIIFIDSIGNLASKKEVEDAINEKSAQDMTRAKALKGLFRMV 178 Query: 302137 AGALSQSKTTAIFINQLREKVGVFFGSPETTSGGKALKFYASVRIDVRRIETLKEGQDAV 302316 L+ + I IN E +F S SGG + A+ + R + KEG + Sbjct: 179 TPYLTMNDIPCIAINHTYETQEMF--SKTVMSGGTGAMYSANEVFIIGRRQQ-KEGTEIT 235 Query: 302317 G-----NRTRAKIVKNKIAPPFKQAEFDIIYGQGISREGSLIDMGVDNG-IIRKSGSWFT 302478 G N +++ VK K P + + GI L+++ V+ G +++ S W++ Sbjct: 236 GYDFILNAEKSRTVKEKSKFP-----ISVTFSGGIDPYSGLLELAVELGWVVKPSNGWYS 290 >ref|NP_795486.1|hypothetical protein Length = 374 Score = 58.9 bits (141), Expect = 1e-06 Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 17/175 (9%) Frame = +1 Query: 1303819 ISADSVSRAHRLLLKDDA-GEAHLAGRHRPMQNWIGGSDHSPRGAXXXXXXXXXXXXXXX 1303995 I+ + HRLL+ D+A G G R +QN+IG D + A Sbjct: 109 ITTRLIKDLHRLLMSDEARGTTSNGGEFRKIQNFIG-PDKNIENASYIPIPANEIGAFMT 167 Query: 1303996 XXXTF----------------SLREDIPTIAQAAVAHSQFEAIHPFTDGNGRIGRALAAG 1304127 F S+ + + + AVAH+QFE IHPF DGNGR+GR L A Sbjct: 168 NLEFFINGEYHSSLECGRTQESINFNSDILLRIAVAHAQFELIHPFLDGNGRLGRILIAL 227 Query: 1304128 ILHSRGVTTGITVPLAAALVEVRDRYFAALNSYHSGDAGPVISLWSKSSVIAAEE 1304292 + G+ ++ L + R RY+ ALN+ + P +LW + A+E+ Sbjct: 228 MSVQEGLLKHPIFFVSEELEKERIRYYNALNA--TRGENPDWNLWLNLFLNASEQ 280 >ref|NP_899623.1|UvsW Length = 507 Score = 58.9 bits (141), Expect = 1e-06 Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 7/195 (3%) Frame = -1 Query: 379479 TGAGKTMIG--ITAAFEAFRQGIKVLVLVPTAELQSQWQRRLME--TLPQADVGTLGNG- 379315 T AGK++I +T F + KVL++VPT L Q + ++ D+ + G Sbjct: 138 TSAGKSLIQSLLTRWFLENHEAQKVLIIVPTTALVQQMRDDFLDYRLFEHGDIYQIRGGV 197 Query: 379314 RRDSLGACDILVAIINSATRAELLKEHSDGLLIADECHRYAAKSFSKALR--SDFRYRLG 379141 RD++G C I+V+ SA + + G+L+ DECH KS ++ + Y++G Sbjct: 198 DRDAIGDCRIVVSTWQSAVKQDKAWFDQFGMLLVDECHLATGKSLDGIIKKMTSCEYKIG 257 Query: 379140 LTATYQRPDKANTAVLDPYFGGVVFQMWYERALRDGVIAEFDIAFVGIGLTDSERGEYQV 378961 LT + R KAN FG + + + + +G + + I + + R E + Sbjct: 258 LTGSL-RDGKANILQYVGSFGDIFRPVSTAQLMEEGQVTDLKINCLMLEYPQPLRDEMK- 315 Query: 378960 ASSAISKLGMSLKNK 378916 SS ++ L+NK Sbjct: 316 GSSYQEEMKFILENK 330 >ref|NP_049935.1|minor tail protein Length = 1626 Score = 58.5 bits (140), Expect = 2e-06 Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 13/134 (9%) Frame = -1 Query: 56298 WNAIINWIKDTWNKIITTISDAVNKV------------KNWISDAWTMIKTMTAKLWNGI 56155 W+ I N + W KI T+ + + KNW SD W KT +K W+ I Sbjct: 880 WDGIKNSASNAWEKIKTSAGQGMTILGKNIDEHHKGISKNW-SDGWENSKTFLSKKWDEI 938 Query: 56154 -KMAIARAIVSAVRTVQGKVQQIKNWITNTWNRVKNTTSNAWSGIKSAVRNGINGAVNFV 55978 ++ + V+ + + + I ++ TNTW+ VK + W +KS R+GIN + Sbjct: 939 GELTQNKFGVNITKIITDALTSIADFFTNTWDNVKKGFGDMWDNLKSLARDGINAVIG-- 996 Query: 55977 RRLPGRALSALGNI 55936 +P + + + + Sbjct: 997 --IPNKGIDGINGL 1008 Score = 42.0 bits (97), Expect = 0.16 Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 17/179 (9%) Frame = -1 Query: 57441 LEKYIGLVDAAAIGMNTSVDETAMIFNRVQGSGKVMTEELQMVEQRMPGFSNALQE---- 57274 L+ G DAA N S MI N GKV +++ + P N L+E Sbjct: 367 LQDAFGQTDAAV--ENFSTQWAQMIAN-----GKVQGQDMMSIINVFPEMKNQLKEVAAQ 419 Query: 57273 HIGVA--SDDEFKKMVTAGEVGSD----AFLETMDTFAGDMAKEHAKSFDGLVDLAKAYV 57112 +G+A + D++ ++ G++ ++ A E D + D + + GL ++ + Sbjct: 420 ELGIADMTQDKYAELQKDGKIPAEMAQKALFELQDKYK-DATANFSTTIGGLERTIQSRM 478 Query: 57111 GQIGEAMLGGVFEQSKDSIAEFVDWLSDPGVQAKAAELGK-------TIGDVFSKVLGV 56956 + A + + + + +W++DP + K ELG+ TI D FSKV + Sbjct: 479 PAVVAAFRDPIDQMKNPFLQQIGNWVADPKTETKFKELGEHVSKGLGTIMDAFSKVFNL 537 >ref|NP_862840.1|gp1 Length = 375 Score = 58.5 bits (140), Expect = 2e-06 Identities = 60/262 (22%), Positives = 115/262 (43%), Gaps = 16/262 (6%) Frame = +3 Query: 221916 VSDIDLNDLRSWLITLDDAGAAKSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTPKKD 222095 +++ID ++S + + D+ T R + +KS F Y V + NN PKK Sbjct: 105 LANIDRRYIQSKIENIIDS-KGYHTAYRVRSRLKSIFDYAVQYSYIENNEVNYTVIPKKP 163 Query: 222096 SRLPTVLKPQQAADLVSRQRTVHTEADNSDPIEATKWVRDAAILEMLYATAVRVSELTGL 222275 L + K + L ++ +A N+ P + + A ++ +L T +R ELT L Sbjct: 164 ETLEDIEKKRNKF-LTMQEIKALIDALNNKPYQQ----KYADMVTVLALTGMRYGELTAL 218 Query: 222276 NRGDVDHQRSMITVLGKG---NKERRVPY-GKPAQTAL----------QKWLSLRDTFAS 222413 ++D + + I + G NK + +P K +T L ++ + L + + Sbjct: 219 QLKNIDFENNKIEITGNFDSINKIKTLPKTAKSIRTILVSDAVIKAIQRQVVRLTERYQP 278 Query: 222414 ESSGDALF-LGVRGGRIGARQVRELVHRYGAADPSAPDIGPHGLRHSAATHMLDGGADLR 222590 D +F L V I +++ +YGA ++ H RHS +++ + G ++ Sbjct: 279 LKDDDYIFCLEVWNSPITLPSFIQIIKKYGAKAGIEKNLSSHIFRHSHISYLAEAGLPIK 338 Query: 222591 QIQELLGHSTMSST-QIYTHVS 222653 I + +GH+ T +IY+H + Sbjct: 339 SIMDRVGHANAKMTLEIYSHTT 360 Score = 56.2 bits (134), Expect = 8e-06 Identities = 45/189 (23%), Positives = 89/189 (47%), Gaps = 11/189 (5%) Frame = +3 Query: 488199 KALSLDDIEAMLATTGGEEPAQIRAAALLELLYATGARISEAVGVDLDDLDLETSLVRLY 488378 K L++ +I+A++ + P Q + A ++ +L TG R E + L ++D E + + + Sbjct: 175 KFLTMQEIKALIDALNNK-PYQQKYADMVTVLALTGMRYGELTALQLKNIDFENNKIEIT 233 Query: 488379 GKG---GKERIVPFGSHA------ATALGAWVSRTRPXXXXXXXXXXXXXXLF-LNARGT 488528 G K + +P + + + A+ + R +F L + Sbjct: 234 GNFDSINKIKTLPKTAKSIRTILVSDAVIKAIQRQVVRLTERYQPLKDDDYIFCLEVWNS 293 Query: 488529 RLSRQTAWQIVKDAGELAGLEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHASV-TTT 488705 ++ + QI+K G AG+E +S H FRHS ++L E G I+ + + +GHA+ T Sbjct: 294 PITLPSFIQIIKKYGAKAGIEKNLSSHIFRHSHISYLAEAGLPIKSIMDRVGHANAKMTL 353 Query: 488706 QIYTKVSEE 488732 +IY+ +++ Sbjct: 354 EIYSHTTQD 362 Score = 50.8 bits (120), Expect = 3e-04 Identities = 61/285 (21%), Positives = 123/285 (43%), Gaps = 14/285 (4%) Frame = +1 Query: 66115 EVAEGKHRARARFRD-FTGKTRQVEA-YGASGAKAERQLLANLRSRVESAGDT-----IS 66273 E+ GK++ R++D +T K ++V +A+ Q L+ +++ T I+ Sbjct: 5 ELPNGKYKFFERYKDPYTEKLKKVSVTMEKKTPQAKNQAAILLQEKIKKKISTKQVESIT 64 Query: 66274 GNTTVSSLGKIWTGNLGKSDEHTEQTIERYESIVEKIIGPALGEYLIMEATVSRVDGFLR 66453 + W+ + S +H ++ ++ ++I L + S+++ + Sbjct: 65 FEEIYNLFYNSWSKTVKASTKHNYTFVDA--TMKKEIPSNTLLANIDRRYIQSKIENIID 122 Query: 66454 ALADKTPGRAKTTKSVLKSMFDLAVRHDALRTNPVREVRLPTK-------RKKPVQALTI 66612 + T R + S LKS+FD AV++ + N V +P K KK + LT+ Sbjct: 123 SKGYHTAYRVR---SRLKSIFDYAVQYSYIENNEVNYTVIPKKPETLEDIEKKRNKFLTM 179 Query: 66613 DEVGTLREGLRKWQAADGVKGPTRSTELLDVVDLMLGTGMRIGEVLALRWSDVDLGEHPR 66792 E+ L D + + D+V ++ TGMR GE+ AL+ ++D E+ + Sbjct: 180 QEIKAL---------IDALNNKPYQQKYADMVTVLALTGMRYGELTALQLKNIDF-ENNK 229 Query: 66793 LTVSGTLVPIKEKGLRRQAHTKTASGFRVLTLPAFVVEVLLRRSV 66927 + ++G I + + KTA R + + V++ + R+ V Sbjct: 230 IEITGNFDSIN----KIKTLPKTAKSIRTILVSDAVIKAIQRQVV 270 >ref|YP_006485.1|Ssb Length = 162 Score = 58.5 bits (140), Expect = 2e-06 Identities = 31/83 (37%), Positives = 44/83 (53%) Frame = -3 Query: 1140904 LSGTVAADPQSRTLPSGRACASFRLAVNHWRLDKGTGEYLSDTTSWFSVDCYGPLASNCS 1140725 L GT+ DP+ R +P+G A +A N DK TG+ + T W V +G LA S Sbjct: 11 LIGTLGQDPEIRYIPNGGAVGRLSIATNESWRDKQTGQQ-KEQTEWHKVVLFGKLAEIAS 69 Query: 1140724 MSLHQGMSVVVQGTLKIREWSTD 1140656 L +G V ++G LK R+W+ D Sbjct: 70 EYLRKGSQVYIEGKLKTRKWTDD 92 >ref|NP_050150.1|ClpP-like protease Length = 242 Score = 58.2 bits (139), Expect = 2e-06 Identities = 34/133 (25%), Positives = 68/133 (51%) Frame = -1 Query: 1103097 ADISLYINSPGGSVTAGMAIYDTMQYIKPDVSTVAMGMAASMGQFLLSSGAPGKRYATPH 1102918 +D++L INSPGG V AG IY ++ + V G A S ++ + A + +P Sbjct: 45 SDVTLEINSPGGYVDAGSEIYTALKEYQGQVIAKITGQACSAASWI--ALAADRIEMSPT 102 Query: 1102917 ARILMHQPLGGIGGTATDIKIQAELILHMKKQMAELTAEQTGKTLEQILKDNDRDHWFTA 1102738 A++++H+ G + D+ + + K +L +++TG +++ + W A Sbjct: 103 AQMMIHRASTISIGNSDDLASDLNALNSLDKSFVDLYSQRTGLDAQEVYRLMCNTTWMNA 162 Query: 1102737 EEALEYGFIDKMV 1102699 +EA++ GF D+++ Sbjct: 163 KEAVDKGFADEIM 175 >ref|NP_817544.1|gp95 Length = 86 Score = 57.8 bits (138), Expect = 3e-06 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Frame = +3 Query: 1373193 DWRHRAACLNEDPELFFPIGNTGPAL-LQIEEAKTVCRRCEVVETCLQWALESGQDA--- 1373360 +WR A C +DPELFFP+G GPA Q+ EAK VC C V CL++ L + Sbjct: 5 NWRVEARCNGQDPELFFPLGR-GPAYEQQVTEAKKVCGGCPVSGECLRFVLSVERPGDYR 63 Query: 1373361 -GVWGGLSEDE 1373390 GV+ GL+EDE Sbjct: 64 HGVFAGLTEDE 74 Score = 56.2 bits (134), Expect = 8e-06 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 9/74 (12%) Frame = -1 Query: 1418841 SWQDQALCAQTDPEAFFPEKGG-----STREAKRVCASCDVRSDCLEYALA----NDERF 1418689 +W+ +A C DPE FFP G EAK+VC C V +CL + L+ D R Sbjct: 5 NWRVEARCNGQDPELFFPLGRGPAYEQQVTEAKKVCGGCPVSGECLRFVLSVERPGDYRH 64 Query: 1418688 GIWGGMSERERRRL 1418647 G++ G++E ERR+L Sbjct: 65 GVFAGLTEDERRQL 78 >ref|NP_038326.1|ORF25 Length = 221 Score = 57.4 bits (137), Expect = 4e-06 Identities = 36/136 (26%), Positives = 70/136 (51%) Frame = -1 Query: 1103106 DPDADISLYINSPGGSVTAGMAIYDTMQYIKPDVSTVAMGMAASMGQFLLSSGAPGKRYA 1102927 D D +I+L I S GG V A IY ++ + G+AAS + +G + Sbjct: 39 DKDEEITLNIASNGGDVFAASEIYTMLKASGKRIVVNVQGLAASAASVISMAGDTVR--I 96 Query: 1102926 TPHARILMHQPLGGIGGTATDIKIQAELILHMKKQMAELTAEQTGKTLEQILKDNDRDHW 1102747 +P A+I++H+ GI G + D++ Q+ ++ + + +A +TG ++L ++ W Sbjct: 97 SPTAQIMIHKASTGIRGNSDDLEHQSAVLSSIDESIALAYEMKTGLKQTELLDLMAKETW 156 Query: 1102746 FTAEEALEYGFIDKMV 1102699 A+ A++ GF D+++ Sbjct: 157 LNAKTAVDKGFADEIM 172 >ref|NP_775225.1|DNA polymerase1 Length = 545 Score = 57.4 bits (137), Expect = 4e-06 Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 5/225 (2%) Frame = +1 Query: 755107 DYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSKVKAMSYGL 755286 D + +E+R++A GD + DG D+H+ + G+ D A K Y Sbjct: 334 DGAGLELRMLASYIGDPDYTREVVDG-DVHT---ANQIAAGLPTRDDA-----KTFIYAF 384 Query: 755287 VYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQARANGYTETIMGRRRY 755466 +YG + + + + L EQ+ + + ++ + ++A GY + GR+ Sbjct: 385 IYGAGDAKIGQIIGGTRADGARLREQFLKANPELAKLIERVKQEAE-RGYLVGLDGRK-- 441 Query: 755467 LPALHSDRRQLRDMAERAALNAPIQGSAADIMKIAMLKVSD--RLGDHKSTVLLQVHDEI 755640 L R + ++ ALN +Q + A +MK AM+ + + R K+ +L +HDE Sbjct: 442 ---LTMRRSESGEVMVHKALNTLLQAAGAIVMKWAMVILDEKVRRAGLKAWKVLDIHDEG 498 Query: 755641 IVDVHPEEIDSV---TQIVTEEMGSAFELDVPLDVNVGTGTSWHD 755766 + HPE++ ++ + +E G + PL + G SW+D Sbjct: 499 QWECHPEDLATLRGFMETCVKEAGEILGCNCPLASDSIAGRSWYD 543 >ref|NP_818463.1|gp163 Length = 236 Score = 57.0 bits (136), Expect = 5e-06 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 9/164 (5%) Frame = -1 Query: 1103166 EVRDSNANAICAQMMLLAAEDPDADISLYINSPGGSVTAGM-AIYDTMQYI-----KPDV 1103005 EV D + A+ + +DP++ +L ++SPGG +G AI ++Y + Sbjct: 74 EVDDDSIFALMDTVNAWHRQDPESKWNLIVDSPGGYCNSGFHAIDQLIEYSAWGGGSHYI 133 Query: 1103004 STVAMGMAASMGQFLLSSGAPGKRYATPHARILMHQPLGGIGGTATDIKIQAELILHMKK 1102825 + GMAASMG +L A +R +A+IL+H G+ G ++ I + Sbjct: 134 TMTVRGMAASMGGIILQ--AADERVMGRNAQILIHPISSGLYGGRGELHDYMGRIEMLTA 191 Query: 1102824 QMAELTAEQTGKTLEQILKDND---RDHWFTAEEALEYGFIDKM 1102702 Q +L + GK L + N ++ W AEEALEY +D++ Sbjct: 192 QAEKLFKHRAGKKLPRKKLKNALMYKNWWIGAEEALEYALVDRI 235 >ref|NP_116498.1|putative ATP-dependent ClpP protein Length = 237 Score = 57.0 bits (136), Expect = 5e-06 Identities = 37/148 (25%), Positives = 73/148 (49%), Gaps = 2/148 (1%) Frame = -1 Query: 1103100 DADISLYINSPGGSVTAGMAIYDTMQYIKPDVSTVAMGMAASMGQFLLSSGAPGKRYATP 1102921 D ++ L I S GG V + IY ++ ++ G+AAS + +G +P Sbjct: 44 DEEVILNIASNGGDVFSASEIYTKLKNSNKNIVVNIEGIAASAASVIAMAGDTVN--ISP 101 Query: 1102920 HARILMHQPLGGIGGTATDIKIQAELILHMKKQMAELTAEQTGKTLEQILKDNDRDHWFT 1102741 A++++H+ + G G A D + +A+++ + + +A +TG +L+ + W T Sbjct: 102 TAQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDLLQLMSNETWMT 161 Query: 1102740 AEEALEYGFIDKM--VTRSSDVTDN*VG 1102663 A++A++ GF D + V + V N +G Sbjct: 162 AQDAVDKGFADNIMFVDANKPVFSNSIG 189 >ref|NP_795429.1|putative integrase Length = 362 Score = 56.6 bits (135), Expect = 6e-06 Identities = 79/311 (25%), Positives = 130/311 (41%), Gaps = 10/311 (3%) Frame = +1 Query: 66166 GKTRQVEAYGASGAKAERQLLANLRSRVESAGDTISGNTTVSSLGKIWTGNLGKSDEHTE 66345 GK + + G +A R+ L +L++ + D + T +L W K E T Sbjct: 26 GKRKYIRREGFKTKQAARETLISLQAEL----DKPKSSMTFGALTDQWL----KEYEKTV 77 Query: 66346 Q--TIERYESIVEKIIGPALGEYLIMEATVSRVDGFLRALADKTPGRAKTTKSVLKSMFD 66519 Q T + E + K I P L + I + + + K +++++ + Sbjct: 78 QCSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEWCNDLKYGGKIL-GLVRNILN 136 Query: 66520 LAVRHDALRTNPVREVRLPT---KRKKPVQALTIDEVGTLREGLRKWQAADGVKGPTRST 66690 LAVR+ + NP + P KRK T+D++ E + K T + Sbjct: 137 LAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFLELVEK----------TDNI 186 Query: 66691 ELLDVVDLMLGTGMRIGEVLALRWSDVDLGEHPRLTVSGTLVPIKEKGLRRQAH-----T 66855 E + + L+ TG+R GE+LAL W D ++G + I + R Q T Sbjct: 187 EKIALFRLLAFTGIRKGELLALTWDD----------LNGNTLSINKAVTRTQVGLEIDVT 236 Query: 66856 KTASGFRVLTLPAFVVEVLLRRSVESIPTETNAVFPSGAGTWKWPNNYRRALRAALKEME 67035 KT S R+++L +E+LL E+ PT T +F S +G P+ R+ L +K + Sbjct: 237 KTKSSDRLISLDDETLEILLELH-ETFPTST-LMFQSESGGIMTPSLPRKWLLQIIKGTD 294 Query: 67036 NTSGITPHVFR 67068 IT H FR Sbjct: 295 -LPQITIHGFR 304 Score = 47.8 bits (112), Expect = 0.003 Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 21/244 (8%) Frame = +3 Query: 222003 IAAVKSFFAYCVNQHGLSNNPAARLRTPKKDSRLPTVLKPQQAADLVSRQRTVHTEADNS 222182 + V++ V ++NNPA + PK + R+R ++ Sbjct: 128 LGLVRNILNLAVRYGYINNNPALPITPPK-----------------IKRKRKMNNNFYTL 170 Query: 222183 DP-------IEATKWVRDAAILEMLYATAVRVSELTGLNRGDVDHQRSMIT--------- 222314 D +E T + A+ +L T +R EL L D++ I Sbjct: 171 DQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVG 230 Query: 222315 ----VLGKGNKERRVPYGKPAQTALQKWLSLRDTFASESSGDALFLGVRGGRIGARQVRE 222482 V + +R + L+ L L +TF + + +F GG + R+ Sbjct: 231 LEIDVTKTKSSDRLISLD---DETLEILLELHETFPTST---LMFQSESGGIMTPSLPRK 284 Query: 222483 LVHRYGAADPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGHSTMSST-QIYTHVSMQ 222659 + + P I HG RH+ A+ + + G L+Q+Q LGH + +T +YTH++ Sbjct: 285 WLLQI-IKGTDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQS 343 Query: 222660 RLQE 222671 + + Sbjct: 344 AIDD 347 Score = 42.7 bits (99), Expect = 0.091 Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 11/219 (5%) Frame = +3 Query: 488124 ALGEGLAATDPASEVSPPQEGLRLP---KALSLDDIEAMLATTGGEEPAQIRAAALLELL 488294 A+ G +PA ++PP+ + +LD ++ L E+ I AL LL Sbjct: 138 AVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFLELV--EKTDNIEKIALFRLL 195 Query: 488295 YATGARISEAVGVDLDDLDLETSLVR---LYGKGGKERIVPFGSHAATALGAWVSRTRPX 488465 TG R E + + DDL+ T + + G E V + ++ L + T Sbjct: 196 AFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVT-KTKSSDRLISLDDETLEI 254 Query: 488466 XXXXXXXXXXXXXLFLNARG----TRLSRQTAWQIVKDAGELAGLEAEVSPHTFRHSFAT 488633 +F + G L R+ QI+K +++ H FRH+ A+ Sbjct: 255 LLELHETFPTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDL-----PQITIHGFRHTHAS 309 Query: 488634 HLLEGGADIRVVQELLGHASV-TTTQIYTKVSEETLREV 488747 L E G ++ VQ LGH + TT +YT +++ + ++ Sbjct: 310 LLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAIDDI 348 >ref|NP_803721.1|ORF155 Length = 482 Score = 56.6 bits (135), Expect = 6e-06 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 6/90 (6%) Frame = +2 Query: 795170 TNNRGELMAVLDLLNSTADAGED-LKVFCDSKYVINALTKWMPGWKRKGWKKADGKDVLN 795346 TNN GEL A ++ +A L + DS+YV +T ++P W + W K+DG V N Sbjct: 73 TNNTGELTAAIEAFKIAHEADAPRLTMLMDSEYVRKGMTAYLPKWIKSNWIKSDGTPVAN 132 Query: 795347 KDLLEQL-DSALKGRE----VEFEWVKGHS 795421 +DL +Q+ + K E + +WV+GH+ Sbjct: 133 QDLWKQMVELKAKWEETNKPLSIQWVRGHN 162 >ref|NP_958557.1|putative superinfection immunity protein Length = 174 Score = 56.6 bits (135), Expect = 6e-06 Identities = 25/40 (62%), Positives = 33/40 (82%) Frame = +2 Query: 1505339 SAETYSDMMHMSKGGIFDQLTSEYGGQFTEDAAQYAIDHL 1505458 SAETY++ MHMSK I+DQL S+ G +F EDAA+YA+DH+ Sbjct: 83 SAETYANDMHMSKAAIYDQLISKSGDKFPEDAAKYAVDHV 122 Score = 44.7 bits (104), Expect = 0.024 Identities = 22/41 (53%), Positives = 29/41 (70%) Frame = +2 Query: 1505339 SAETYSDMMHMSKGGIFDQLTSEYGGQFTEDAAQYAIDHLN 1505461 SA+TY M+MS I DQLTS G +FT + AQYA+D+L+ Sbjct: 133 SAKTYQKDMNMSTAEIKDQLTSNSGDKFTPEEAQYAVDNLS 173 >ref|YP_024948.1|gp28 Length = 459 Score = 56.6 bits (135), Expect = 6e-06 Identities = 92/367 (25%), Positives = 141/367 (38%), Gaps = 42/367 (11%) Frame = +3 Query: 367905 RVVLDEAQVIKN------RLSQTTKAIRRLNGGQK---------------IALTGTPVEN 368021 RV+ DE+ +K+ R + T+ +++ G + + LTGTP N Sbjct: 104 RVIADESTKLKSTRVSNQRSKRGTEFVKKSGGSVRGRALAEVAHTKVHGWVNLTGTPSPN 163 Query: 368022 RLSELWSIMDFVNPGM-LGTP-EKFRERFVRPIE----VRADEERAHRLRRITRPYILRR 368183 L +LW FV+ G LG F ER+ + + R AH I + Sbjct: 164 GLQDLWGQQWFVDGGQRLGRSFSAFEERWFQSVPGGNGYRQTRPLAHAQDEIQKALADCT 223 Query: 368184 TKTDPRIIDDLPEKIEIKQHYRLTVEQASLYQSVVAEMMGRIEESSGIERRGLVLAAMTK 368363 DP DL E I + L LY+ + +M I++S IE M K Sbjct: 224 ISLDPADWFDLDEPIVRPVYVELPAAARRLYRDMERQMFMEIDDSP-IEAMNAASKTM-K 281 Query: 368364 LKQVCNHPAHLLH-DGSAIGQ----RSGKLERFEEIMSETLAEGDRVLCFTQFTDFGEML 368528 Q+ N + DGS KL+ EEI+ E A G VL Sbjct: 282 CLQLANGAVYKQEDDGSDTAPWHEVHDLKLQALEEIVEE--AAGMPVL------------ 327 Query: 368529 VPHLAAKFDTDVAYLAGSTSKQRR----TQIVKDFQEPDGPKIFVLSLKAGGTGLNL-TA 368693 +A F +D+A L + + R+ Q ++D+ P +F A G GLNL Sbjct: 328 ---VAYHFKSDLARLQRAFPRGRQLDQNPQTIRDWNAGKIPVMFAHPASA-GHGLNLQDG 383 Query: 368694 ANQVVHLDRWWN-----PAVENQATDRAFRIGQKRRVQVRKFIGIGTLEERIDAILEEKK 368858 N + WWN VE R + G +R V + I T++E + E K+ Sbjct: 384 GNILAVFGHWWNLEEYLQIVERIGPVRQLQAGHRRPVFIYPIIARDTIDEDVVERRETKR 443 Query: 368859 ELADMVV 368879 + D+++ Sbjct: 444 AVQDILL 450 >ref|NP_945240.1|integrase Length = 380 Score = 56.6 bits (135), Expect = 6e-06 Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 26/230 (11%) Frame = +3 Query: 488121 FALGEGLAATDPASEVSPPQEGLRLP-------KALSLDDIEAMLATTGGEEPAQIRAAA 488279 +A+ G+ +PA P+ L K L D+I+ +L P+ R Sbjct: 140 YAIDLGIIKDNPARRAKLPRVQKTLEDWKKVGQKYLEEDEIKLLLKELY-RRPSTYRIGL 198 Query: 488280 LLELLYATGARISEAVGVDLDDLDLETSLVRLYG---------KGGKERIVPFGSHAATA 488432 L E + G RI EAVG++ ++D E++ ++L+G KG K S+ T Sbjct: 199 LSEFMSLNGCRIGEAVGIEPHNVDYESNTLQLHGTYDHTNGYQKGEKTSPKTLASYRETV 258 Query: 488433 LGAWVSRT-------RPXXXXXXXXXXXXXXLFLNARGTRLSRQTAWQIVKDAGEL--AG 488585 + +F G L + +K A E Sbjct: 259 MTTREKEILEEMEFMNELEKNTNPRYKDMGFIFTTKNGVPLQTNSFNLALKKANERLETP 318 Query: 488586 LEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHASV-TTTQIYTKVSEE 488732 ++ ++ H FRH+ + L E ++ + + +GH+ TTTQIYT ++++ Sbjct: 319 IQKNLTSHIFRHTLVSRLAENNVPLKAIMDRVGHSDAKTTTQIYTHITKQ 368 Score = 40.4 bits (93), Expect = 0.45 Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 17/222 (7%) Frame = +1 Query: 66463 DKTPGRAKTTKSVLKSMFDLAVRHDALRTNPVREVRLPTKRK-----KPV--QALTIDEV 66621 D + + + KS+L FD A+ ++ NP R +LP +K K V + L DE+ Sbjct: 121 DCSRNKKERNKSMLNLAFDYAIDLGIIKDNPARRAKLPRVQKTLEDWKKVGQKYLEEDEI 180 Query: 66622 GTLREGLRKWQAADGVKGPTRSTELLDVVDLMLGTGMRIGEVLALRWSDVDLGEHPRLTV 66801 L + L + + T LL + M G RIGE + + +VD E L + Sbjct: 181 KLLLKELYR-------RPSTYRIGLLS--EFMSLNGCRIGEAVGIEPHNVDY-ESNTLQL 230 Query: 66802 SGTLVPIKEKGLRRQAHTKTASGFRVLTLPAFVVEVL--------LRRSVESIPTETNAV 66957 GT + KT + +R + E+L L ++ + + Sbjct: 231 HGTYDHTNGYQKGEKTSPKTLASYRETVMTTREKEILEEMEFMNELEKNTNPRYKDMGFI 290 Query: 66958 FPSGAGTWKWPNNYRRALRAALKEMEN--TSGITPHVFRKSV 67077 F + G N++ AL+ A + +E +T H+FR ++ Sbjct: 291 FTTKNGVPLQTNSFNLALKKANERLETPIQKNLTSHIFRHTL 332 >ref|YP_024499.1|putative helicase Length = 582 Score = 56.2 bits (134), Expect = 8e-06 Identities = 28/99 (28%), Positives = 51/99 (51%) Frame = -1 Query: 378723 ESKGSLIFSQTVDSSSQAALLLQRAGIETKAVSSASKPHERRGAMQQFANGFAKVLCAPR 378544 + KG+LI ++ + +L +E + RR + +G KV+ A Sbjct: 444 QDKGTLIIVNFIEHGDTISEMLNDLDVEHYFLHGEIDSETRREKLNDMRSGKLKVMIATS 503 Query: 378543 ILDEGIDVPDSDLAVVLSGSKQPRQTIQRLGRIIRRKDD 378427 ++DEG+D+ + ++ +G K RQT+QR+GR +R+K D Sbjct: 504 LIDEGVDISGINALILGAGGKSLRQTLQRIGRALRKKKD 542 Score = 45.1 bits (105), Expect = 0.018 Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 3/126 (2%) Frame = +1 Query: 1217188 KSELVARMLQA---EGRGRTIIFTRTKRTADKLAAELGDRGFQVKPLHGDLGQAQREKAL 1217358 +++L+A++ + + +G T+I D ++ L D + LHG++ R + L Sbjct: 430 RNKLIAKLTEKWYNQDKG-TLIIVNFIEHGDTISEMLNDLDVEHYFLHGEIDSETRREKL 488 Query: 1217359 KSFREGQVDVLVATDVAARGIDIDDVTHVVNYQCPDDEKTYVHRIGRTGRAGNTGIAVTL 1217538 R G++ V++AT + G+DI + ++ + + RIGR R + Sbjct: 489 NDMRSGKLKVMIATSLIDEGVDISGINALILGAGGKSLRQTLQRIGRALRKKKDDNTTQI 548 Query: 1217539 VDWDDM 1217556 D++DM Sbjct: 549 FDFNDM 554 >ref|YP_006958.1|flap endonuclease Length = 291 Score = 56.2 bits (134), Expect = 8e-06 Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 12/227 (5%) Frame = +1 Query: 753130 SLLLIDGHSLAYRAFHALPVENFSTSTGQSTNAIYGFISMLINVLRDESPSHVAVAFDLG 753309 +L+++DG +L +R H + F++S ++S + ++ + S V D G Sbjct: 21 NLMIVDGTNLGFRFKHNNSKKPFASS----------YVSTIQSLAKSYSARTTIVLGDKG 70 Query: 753310 RQTFRLEEYPEYKAGRAKTPPEFHPQ--------IDLIKDIVVAMGIT--VVTKEGFEAD 753459 + FRLE PEYK R + + + + +KD T T G EAD Sbjct: 71 KSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTFPTFTIRGVEAD 130 Query: 753460 DALATMARMGTEAGAQVEVMSGDKDSFQLSNDSVT-ILYPKRGVSDLNRMTPAAIEEKYA 753636 D A + ++ V ++S D D L D V+ + R L M E + Sbjct: 131 DMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFTTRREYHLRDM-----YEHHN 185 Query: 753637 VTPV-NYRGLAALVGEKADNLPGVPGVGDKTAAKWLAAYGDLPGVLE 753774 V V + L A++G+ DN+ GV G+G K + +G++ +++ Sbjct: 186 VDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIID 232 Score = 51.6 bits (122), Expect = 2e-04 Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 7/186 (3%) Frame = -2 Query: 868430 QMIRRFDSPRVVATMDADWRPAFRTAIMPEYKAARVKDAEAGTEIPPELDAQL-PIMTDV 868254 Q + + S R + + FR +PEYK R + TE LD Q + D Sbjct: 52 QSLAKSYSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDA 111 Query: 868253 --LRAAGIPIAEVDGTEADDV---IATMAAQSQTPVVIVSPDRDLLALI-DAASDVSVLR 868092 L P + G EADD+ I + V ++S D D L+ D S S Sbjct: 112 FELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFTT 171 Query: 868091 PRKGGEWEAISQADLPEAYGVPDGTRYRELAAMRGDPSDGLPGAPGIGEKTAATLLANFG 867912 R+ D+ E + V D ++ L A+ GD D + G GIG K ++ FG Sbjct: 172 RRE------YHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFG 225 Query: 867911 SLESII 867894 ++ II Sbjct: 226 NVLDII 231 >ref|NP_944130.1|UvsW RNA-DNA and DNA-DNA helicase Length = 503 Score = 56.2 bits (134), Expect = 8e-06 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 14/205 (6%) Frame = -1 Query: 379551 LWTWQAEALDAWHQSEC--------RGVVEAVTGAGKTMIGITAAFEAF-RQGIKVLVLV 379399 +++ Q + W+Q++ R + T AGK++I + R KVLVLV Sbjct: 105 IYSGQNKITPHWYQADTVFNAINKNRMIGNLPTSAGKSLIACLLTYWYLQRYEGKVLVLV 164 Query: 379398 PTAELQSQWQRRLME--TLPQ-ADVGTLGNGRRDSLGACDILVAIINSATRAELLKEHSD 379228 PT L Q + +P+ A +G + R++ G+ I+V+ SA + Sbjct: 165 PTTALVDQMIGDFADYRLIPRNACLGVMAGTRKN--GSEPIVVSTWQSACKMNSEWFKQF 222 Query: 379227 GLLIADECHRYAAKSFSKALR--SDFRYRLGLTATYQRPDKANTAVLDPYFGGVVFQMWY 379054 G++I DECH AK + ++ +D R+++G++ + R KAN FG V + Sbjct: 223 GMIIVDECHLSTAKELTTIIKGMADCRFKIGMSGSL-RDGKANVLQYIGMFGDVFRPVTT 281 Query: 379053 ERALRDGVIAEFDIAFVGIGLTDSE 378979 ++ + DG + + DI V + D E Sbjct: 282 KKLMEDGQVTDLDINAVFLRYPDHE 306 >ref|NP_047934.1|gp43 Length = 729 Score = 55.8 bits (133), Expect = 1e-05 Identities = 35/115 (30%), Positives = 57/115 (49%) Frame = -1 Query: 56223 VKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKVQQIKNWITNTWNRVKNTT 56044 V NW W K + LW+ +K I + G IK+W ++ ++ T Sbjct: 501 VANW-DKIWAYTKKVFQWLWDWVKK-IFNWLEDLFLNFTGPGLLIKHW-----DKSRSAT 553 Query: 56043 SNAWSGIKSAVRNGINGAVNFVRRLPGRALSALGNIGSKLYNSGKAMIDGFKDGI 55879 N ++ +K+ ++ +N VNFV+ LPGR LSA ++ S G +IDG K+G+ Sbjct: 554 KNTFNNVKNFAKDALNAVVNFVKGLPGRILSAASSLLSAGKRIGGYVIDGIKNGL 608 Score = 43.1 bits (100), Expect = 0.070 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 13/162 (8%) Frame = -1 Query: 56424 GFISWIVGLWNGIIGTAKAVFLGIGTAIITAWNWIKTKTSDVWNAIINWIKDT------- 56266 G + IV W+ I K VF + W+W+K I NW++D Sbjct: 495 GLVVLIVANWDKIWAYTKKVFQWL-------WDWVKK--------IFNWLEDLFLNFTGP 539 Query: 56265 ------WNKIITTISDAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQG 56104 W+K + + N VKN+ DA + L G ++ A +++SA + + G Sbjct: 540 GLLIKHWDKSRSATKNTFNNVKNFAKDALNAVVNFVKGL-PGRILSAASSLLSAGKRIGG 598 Query: 56103 KVQQIKNWITNTWNRVKNTTSNAWSGIKSAVRNGINGAVNFV 55978 + + I N +++ S+ S + A + ING ++ + Sbjct: 599 ---YVIDGIKNGLSKLGGFASSLASAVGRAAKGAINGVIDLL 637 >ref|NP_049395.1|putative scaffolding protein Length = 222 Score = 55.5 bits (132), Expect = 1e-05 Identities = 36/141 (25%), Positives = 70/141 (49%) Frame = -1 Query: 1103106 DPDADISLYINSPGGSVTAGMAIYDTMQYIKPDVSTVAMGMAASMGQFLLSSGAPGKRYA 1102927 D D +I+L I S GG V A IY ++ + G+AAS + +G + Sbjct: 39 DEDEEITLNIASNGGDVFAASEIYTMLRDSGKRIVVNIQGLAASAASVISMAGNTVR--I 96 Query: 1102926 TPHARILMHQPLGGIGGTATDIKIQAELILHMKKQMAELTAEQTGKTLEQILKDNDRDHW 1102747 +P A I++H+ G G + D++ Q+ ++ + + +A +TG ++L+ ++ W Sbjct: 97 SPTAHIMIHKASSGFVGNSDDMEHQSVVLNSIDESIALAYEMKTGLKQSELLELMAKETW 156 Query: 1102746 FTAEEALEYGFIDKMVTRSSD 1102684 A+ A++ GF D+++ D Sbjct: 157 LNAKTAVDKGFADEIMFFGDD 177 >ref|NP_795616.1|putative helicase Length = 409 Score = 55.5 bits (132), Expect = 1e-05 Identities = 28/110 (25%), Positives = 63/110 (57%) Frame = -1 Query: 378729 IAESKGSLIFSQTVDSSSQAALLLQRAGIETKAVSSASKPHERRGAMQQFANGFAKVLCA 378550 +A+ K +++++ +V++S + + +AG ++++VS + ER AMQ F +G ++L Sbjct: 172 LAKGKQAIVYTHSVEASHLVSDMFNQAGYQSQSVSGKTPKSEREEAMQAFRDGKLRILVN 231 Query: 378549 PRILDEGIDVPDSDLAVVLSGSKQPRQTIQRLGRIIRRKDDGRHGRFVVL 378400 + EGID+P+ D+ ++L +P Q++ + R + R G+ ++ Sbjct: 232 CELFTEGIDLPNVDVCIML----RPTQSLSLYLQFAMRPLNPRDGKIAII 277 Score = 42.4 bits (98), Expect = 0.12 Identities = 19/73 (26%), Positives = 46/73 (63%) Frame = +1 Query: 1217218 AEGRGRTIIFTRTKRTADKLAAELGDRGFQVKPLHGDLGQAQREKALKSFREGQVDVLVA 1217397 A+G+ + I++T + + ++ G+Q + + G +++RE+A+++FR+G++ +LV Sbjct: 173 AKGK-QAIVYTHSVEASHLVSDMFNQAGYQSQSVSGKTPKSEREEAMQAFRDGKLRILVN 231 Query: 1217398 TDVAARGIDIDDV 1217436 ++ GID+ +V Sbjct: 232 CELFTEGIDLPNV 244 Score = 40.8 bits (94), Expect = 0.35 Identities = 15/70 (21%), Positives = 40/70 (57%) Frame = -2 Query: 618227 IMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVATDVAARG 618048 I++ + +A+ +++ G+++ +++G P+ RE + R+GK+ ILV ++ G Sbjct: 179 IVYTHSVEASHLVSDMFNQAGYQSQSVSGKTPKSEREEAMQAFRDGKLRILVNCELFTEG 238 Query: 618047 LDVERITLVV 618018 +D+ + + + Sbjct: 239 IDLPNVDVCI 248 >ref|NP_795446.1|putative DEAD box family helicase Length = 409 Score = 55.5 bits (132), Expect = 1e-05 Identities = 28/110 (25%), Positives = 63/110 (57%) Frame = -1 Query: 378729 IAESKGSLIFSQTVDSSSQAALLLQRAGIETKAVSSASKPHERRGAMQQFANGFAKVLCA 378550 +A+ K +++++ +V++S + + +AG ++++VS + ER AMQ F +G ++L Sbjct: 172 LAKGKQAIVYTHSVEASHLVSDMFNQAGYQSQSVSGKTPKSEREEAMQAFRDGKLRILVN 231 Query: 378549 PRILDEGIDVPDSDLAVVLSGSKQPRQTIQRLGRIIRRKDDGRHGRFVVL 378400 + EGID+P+ D+ ++L +P Q++ + R + R G+ ++ Sbjct: 232 CELFTEGIDLPNVDVCIML----RPTQSLSLYLQFAMRPLNPRDGKIAII 277 Score = 43.9 bits (102), Expect = 0.041 Identities = 26/120 (21%), Positives = 63/120 (52%) Frame = +1 Query: 1217218 AEGRGRTIIFTRTKRTADKLAAELGDRGFQVKPLHGDLGQAQREKALKSFREGQVDVLVA 1217397 A+G+ + I++T + + ++ G+Q + + G +++RE+A+++FR+G++ +LV Sbjct: 173 AKGK-QAIVYTHSVEASHLVSDMFNQAGYQSQSVSGKTPKSEREEAMQAFRDGKLRILVN 231 Query: 1217398 TDVAARGIDIDDVTHVVNYQCPDDEKTYVHRIGRTGRAGNTGIAVTLVDWDDMPRWRLIN 1217577 ++ GID+ +V + + Y+ R + IA+ + ++ R+ L+N Sbjct: 232 CELFTEGIDLPNVDVCIMLRPTQSLSLYLQFAMRPLNPRDGKIAIIIDHVGNVERFGLLN 291 Score = 40.8 bits (94), Expect = 0.35 Identities = 15/70 (21%), Positives = 40/70 (57%) Frame = -2 Query: 618227 IMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVATDVAARG 618048 I++ + +A+ +++ G+++ +++G P+ RE + R+GK+ ILV ++ G Sbjct: 179 IVYTHSVEASHLVSDMFNQAGYQSQSVSGKTPKSEREEAMQAFRDGKLRILVNCELFTEG 238 Query: 618047 LDVERITLVV 618018 +D+ + + + Sbjct: 239 IDLPNVDVCI 248 >ref|NP_112719.1|ORF56 Length = 418 Score = 55.5 bits (132), Expect = 1e-05 Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Frame = +1 Query: 1304008 FSLREDIPTIAQAAVAHSQFEAIHPFTDGNGRIGRALAAGILHSRGVTTGITVPLAAALV 1304187 F R+DIPT +A ++H FE HPF DGNGR GR + L +R + V ++ A++ Sbjct: 218 FMNRDDIPTYEKAFISHFYFENTHPFYDGNGRTGRFILCSYL-ARKLDYLSAVGVSVAIL 276 Query: 1304188 EVRDRYFAAL-NSYHSGDAGPVISLWSKSSVIAAEEAQLTAHRLAGLPDEWADLLGHPRE 1304364 E R +Y+ A H + G + S I + Q + L +W L RE Sbjct: 277 ENRSKYYKAFEEGSHPKNVGEITSFIFDMFGIVLKAQQKVLNSL----KDWDKKLEQIRE 332 Query: 1304365 N 1304367 N Sbjct: 333 N 333 >ref|NP_543053.1|putative integrase Length = 437 Score = 55.5 bits (132), Expect = 1e-05 Identities = 48/179 (26%), Positives = 70/179 (39%), Gaps = 14/179 (7%) Frame = +1 Query: 66283 TVSSLGKIWTGNLGKSDEHTEQTIERYESIVEKIIGPALGEYLIMEATVSRV-------- 66438 TV L K W K E + RYES+ +I G L+ T + Sbjct: 83 TVKELEKKWLDL--KRMEISANAFNRYESVARTMIPKIGGSRLVSTVTKEELLYIRKDLL 140 Query: 66439 DGFLRALADKTPGRAKTTKSV------LKSMFDLAVRHDALRTNPVREVRLPTKRKKPVQ 66600 G+ + DK P R ++ +V + MF A H L NP ++ K + Sbjct: 141 TGYQNSTKDKAPARGRSVVTVNYYMTTIAGMFQFAADHGYLEANPFEGIKPLKKARAEPD 200 Query: 66601 ALTIDEVGTLREGLRKWQAADGVKGPTRSTELLDVVDLMLGTGMRIGEVLALRWSDVDL 66777 LT DE L + R Q + + L + TGMR GE+++L W D+DL Sbjct: 201 PLTRDEFIRLIDACRHQQTKN-------------LWSLAVYTGMRHGELVSLAWEDIDL 246 >ref|NP_945016.1|unknown Length = 293 Score = 55.5 bits (132), Expect = 1e-05 Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 12/277 (4%) Frame = -3 Query: 1645969 DIYNFANGEI-------YVRFSESVRGCD---VFVLQSHSAPINEWLMEQLIMVDALKRA 1645820 +I F +GEI +V+F+E G + +Q + L VD+L Sbjct: 22 NIIQFPSGEIGGNFSEDFVKFTERNAGKIDNVIITVQGYDKDTLFALALAKDAVDSLVPQ 81 Query: 1645819 SAKRITVIAPFFPYARQDKKHRGREPISARLVADLYKTAGADRIITVDLHTAQIQGYFDG 1645640 + TV+ F P AR D+ + + ++ A+L G D + +D H+ + F Sbjct: 82 KSAMKTVVFGFLPNARYDRHMFKGDAAALKVFANLVNAMGFDAVCALDPHSNVAENLFK- 140 Query: 1645639 PVDHLIAMPILAGYVKDKYPGDLAVVSPDAGRIKVAENWSNSLGGVPLAFIHKTRDITRP 1645460 + + Y D P +V+PDAG K + + P + K R++ + Sbjct: 141 CFQSMKQKDVAVHYAND--PLIDYLVAPDAGASKKIAETAKEV-DKPYITMSKVRNL-KT 196 Query: 1645459 NETKANRVVGEVE--GRTCVLVDDMIDTGGTIVQXXXXXXXXXATGVIVVSTHAVFSGPA 1645286 E R++ +V+ +T +++DD+ D G T V+ A V + TH +FS Sbjct: 197 GEITGMRILDDVDLTDKTVMILDDICDGGRTFVEAAKHLREAGAKRVELYVTHGIFS-KD 255 Query: 1645285 VERLSNSVAQEVIVTNTLPLTEDKMFDKLTVLSIAPL 1645175 VE L ++ + TN+L +D+ + +++A L Sbjct: 256 VENLLDNGIDHIYTTNSLGEAKDRGLTHYSQVTVANL 292 >ref|NP_945015.1|unknown Length = 298 Score = 55.5 bits (132), Expect = 1e-05 Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 12/277 (4%) Frame = -3 Query: 1645969 DIYNFANGEI-------YVRFSESVRGCD---VFVLQSHSAPINEWLMEQLIMVDALKRA 1645820 +I F +GEI +V+F+E G + +Q + L VD+L Sbjct: 27 NIIQFPSGEIGGNFSEDFVKFTERNAGKIDNVIITVQGYDKDTLFALALAKDAVDSLVPQ 86 Query: 1645819 SAKRITVIAPFFPYARQDKKHRGREPISARLVADLYKTAGADRIITVDLHTAQIQGYFDG 1645640 + TV+ F P AR D+ + + ++ A+L G D + +D H+ + F Sbjct: 87 KSAMKTVVFGFLPNARYDRHMFKGDAAALKVFANLVNAMGFDAVCALDPHSNVAENLFK- 145 Query: 1645639 PVDHLIAMPILAGYVKDKYPGDLAVVSPDAGRIKVAENWSNSLGGVPLAFIHKTRDITRP 1645460 + + Y D P +V+PDAG K + + P + K R++ + Sbjct: 146 CFQSMKQKDVAVHYAND--PLIDYLVAPDAGASKKIAETAKEV-DKPYITMSKVRNL-KT 201 Query: 1645459 NETKANRVVGEVE--GRTCVLVDDMIDTGGTIVQXXXXXXXXXATGVIVVSTHAVFSGPA 1645286 E R++ +V+ +T +++DD+ D G T V+ A V + TH +FS Sbjct: 202 GEITGMRILDDVDLTDKTVMILDDICDGGRTFVEAAKHLREAGAKRVELYVTHGIFS-KD 260 Query: 1645285 VERLSNSVAQEVIVTNTLPLTEDKMFDKLTVLSIAPL 1645175 VE L ++ + TN+L +D+ + +++A L Sbjct: 261 VENLLDNGIDHIYTTNSLGEAKDRGLTHYSQVTVANL 297 >ref|NP_943894.1|UvsX Length = 411 Score = 55.5 bits (132), Expect = 1e-05 Identities = 61/292 (20%), Positives = 127/292 (43%), Gaps = 13/292 (4%) Frame = +1 Query: 301717 CIPTGSIALDIALG---IGGLPRGRVVEIYGPESSGKTTVALHAVANAQKT--GGIAAFI 301881 C+ T L++A+ GGL G V + GP K+ ++L VA + + F Sbjct: 43 CVRTRVPLLNLAMSGELDGGLTPGLTV-LAGPSKHFKSNLSLVFVAAYLRKYPDAVCIFF 101 Query: 301882 DAEHALDPEYAKKLGVDTDQLLVSQ-PDTGEQALEIADML--IRSGALDVIVIDSVAALV 302052 D E P Y + GVD +++ + E +I L I G ++ +DS+ Sbjct: 102 DNEFGSTPGYFESQGVDISRVIHCPFKNIEELKFDIVKKLEAIERGDRVIVFVDSIGNAA 161 Query: 302053 PKAEIEGEMGDSHVG--LQARLMSQALRKIAGALSQSKTTAIFINQLREKVGVFFGSPET 302226 K EI+ + + V +A+ + R + L+ + AI + + ++ S + Sbjct: 162 SKKEIDDAIDEKSVSDMTRAKQIKSLTRMMTPYLTVNDIPAIMVAHTYDTQEMY--SKKV 219 Query: 302227 TSGGKALKFYASVRIDVRRIETLKEGQDAVGNRTRAKIVKNKIAPPFKQAEFDIIYGQGI 302406 SGG + + + I + R + K+G++ +G + K++ + ++ + GI Sbjct: 220 VSGGTGITYSSDTVIIIGRQQE-KDGKELLGYNFVLNMEKSRFVKEQSKLPLEVTFQGGI 278 Query: 302407 SREGSLIDMGVDNG-IIRKSGSWFT--YDGDQLGQGKENVRNFLRDNPGLAE 302553 + ++D+ ++ G +++ S WF+ + ++ G+ E R + R + E Sbjct: 279 NTYSGMLDIALEVGFVVKPSNGWFSRAFLDEETGELVEEDRKWRRADTNCLE 330 >ref|YP_164279.1|single-stranded DNA-binding protein Length = 167 Score = 55.1 bits (131), Expect = 2e-05 Identities = 31/102 (30%), Positives = 51/102 (50%) Frame = -3 Query: 1140904 LSGTVAADPQSRTLPSGRACASFRLAVNHWRLDKGTGEYLSDTTSWFSVDCYGPLASNCS 1140725 L G + DP +R+ P G+A S LA + DK TG+ + T W V +G LA + Sbjct: 10 LVGHLGQDPDARSTPGGKAVTSLSLATSESWKDKQTGQQ-QERTEWHRVVLFGRLAEIAA 68 Query: 1140724 MSLHQGMSVVVQGTLKIREWSTDEKRGIAPTVVAEHIGPDLR 1140599 L +G V ++G+L+ R+W + + T V I +++ Sbjct: 69 QYLRKGSQVYIEGSLRTRKWQGQDGQDHYSTEVVVDINGNMQ 110 >ref|NP_049978.1|putative minor tail protein Length = 1560 Score = 53.9 bits (128), Expect = 4e-05 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 2/145 (1%) Frame = -1 Query: 56331 WNWIKTKTSDVWNAIINWIKDTWNKIITTISDAVNKV-KNWISDAWTMIKTMTAKLWNGI 56155 W+ IK S W I + N + I++ + KNW SD W KT +K W+ I Sbjct: 812 WDGIKEFASKTWGGIHKNSTEAMNVLGKDINNHHKDIAKNW-SDGWENSKTFLSKKWDEI 870 Query: 56154 -KMAIARAIVSAVRTVQGKVQQIKNWITNTWNRVKNTTSNAWSGIKSAVRNGINGAVNFV 55978 + + V+ + + ++ I ++ NTW+ + + W+G+K ++GIN + Sbjct: 871 GALTQDKFGVNITKVITDTLKSIGDFFKNTWDGISKGFGDMWNGMKKLAQDGINAVI--- 927 Query: 55977 RRLPGRALSALGNIGSKLYNSGKAM 55903 +LP + + + S S A+ Sbjct: 928 -KLPNDGIDGINKLISDFGGSKNAI 951 Score = 43.5 bits (101), Expect = 0.053 Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 17/179 (9%) Frame = -1 Query: 57441 LEKYIGLVDAAAIGMNTSVDETAMIFNRVQGSGKVMTEELQMVEQRMPGFSNALQE---- 57274 L+ G DAA N S MI N GKV +++ + P N L+E Sbjct: 367 LQDAFGQTDAAV--ENFSTQWAQMIAN-----GKVQGQDMMSIINVFPEMKNQLKEVAAQ 419 Query: 57273 HIGVA--SDDEFKKMVTAGEVGSD----AFLETMDTFAGDMAKEHAKSFDGLVDLAKAYV 57112 +G+A + D++ ++ G++ ++ A E D + D + + GL K+ + Sbjct: 420 ELGIADMTQDKYAELQHDGKITAEMAQKALFELQDKYK-DATANFSTTIGGLERTIKSRM 478 Query: 57111 GQIGEAMLGGVFEQSKDSIAEFVDWLSDPGVQAKAAELGK-------TIGDVFSKVLGV 56956 + A + + + + +W++DP + K ELG+ TI D FSKV + Sbjct: 479 PAVVAAFRDPIDKMKNPFLQQIGNWVADPNTETKFKELGEHVSKGLSTIMDAFSKVFNL 537 >ref|NP_050128.1|putative DEAH-family helicase Length = 455 Score = 53.9 bits (128), Expect = 4e-05 Identities = 31/100 (31%), Positives = 51/100 (51%) Frame = -1 Query: 378726 AESKGSLIFSQTVDSSSQAALLLQRAGIETKAVSSASKPHERRGAMQQFANGFAKVLCAP 378547 A + ++I+S +V S Q A + I K V +K +R AMQ F +G K+L Sbjct: 214 ANNTKAIIYSYSVHSCQQIAKEFNKNNIPAKEVDGKTKKEDRDKAMQDFRDGKIKILVNA 273 Query: 378546 RILDEGIDVPDSDLAVVLSGSKQPRQTIQRLGRIIRRKDD 378427 + EG+DVPD + ++L ++ IQ+ R +R + D Sbjct: 274 ELYGEGVDVPDCETVIMLRPTQSLSLFIQQSMRCMRYQPD 313 Score = 44.7 bits (104), Expect = 0.024 Identities = 18/72 (25%), Positives = 39/72 (54%) Frame = +1 Query: 1217233 RTIIFTRTKRTADKLAAELGDRGFQVKPLHGDLGQAQREKALKSFREGQVDVLVATDVAA 1217412 + II++ + + ++A E K + G + R+KA++ FR+G++ +LV ++ Sbjct: 218 KAIIYSYSVHSCQQIAKEFNKNNIPAKEVDGKTKKEDRDKAMQDFRDGKIKILVNAELYG 277 Query: 1217413 RGIDIDDVTHVV 1217448 G+D+ D V+ Sbjct: 278 EGVDVPDCETVI 289 >ref|NP_049970.1|Predicted clp-protease Length = 224 Score = 53.5 bits (127), Expect = 5e-05 Identities = 37/143 (25%), Positives = 72/143 (50%) Frame = -1 Query: 1103112 AEDPDADISLYINSPGGSVTAGMAIYDTMQYIKPDVSTVAMGMAASMGQFLLSSGAPGKR 1102933 A D +I+L I S GG V A IY ++ + G+AAS ++S A R Sbjct: 40 ANDEGEEITLNIASNGGDVFAASEIYTMLKSCGKRIVANVQGLAASAAS-VISMAADTVR 98 Query: 1102932 YATPHARILMHQPLGGIGGTATDIKIQAELILHMKKQMAELTAEQTGKTLEQILKDNDRD 1102753 +P A +++H+ G+ G + D++ Q+ ++ + + +A +TG ++L ++ Sbjct: 99 -ISPTAHMMIHKASSGLVGNSDDMEHQSVVLNSIDESIALAYEMKTGLKQTELLDLMAKE 157 Query: 1102752 HWFTAEEALEYGFIDKMVTRSSD 1102684 W A+ A++ GF D+++ +D Sbjct: 158 TWLNAKTAVDKGFADEIMFFGND 180 >ref|NP_665963.1|putative site specific recombinase Int2 Length = 199 Score = 53.1 bits (126), Expect = 7e-05 Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 23/195 (11%) Frame = +3 Query: 222132 ADLVSRQRTVHTEADNSDPIEATKWVRDAAILEMLYATAVRVSELTGLNRGDVDHQRSMI 222311 AD V + EA + +E + RD AIL +LY T +R +EL+G++R +D ++ Sbjct: 4 ADEVHWLKPDQVEAMRAAVLEGSHPERDNAILTLLYDTGLRRAELSGVDRAMLDVDDELL 63 Query: 222312 TV---LGKGNKERRVPYGKPAQTALQKWLSLRDTFAS-------ESSGDALFLGVRGGRI 222461 + + KG R P +PA L + +LR T A+ DALF R+ Sbjct: 64 RIPSRIQKGYPNDRDP--RPATFELDRGENLR-TIATLNAYLEVRDDVDALFPSQMSTRM 120 Query: 222462 GARQVRELVHRYGAADPSAP----------DIGPHGLRHSAATHML--DGGADLRQIQEL 222605 + V ++V R P D+ H LRHS A ML + G L ++ Sbjct: 121 SPKGVNDVVKRAARRADIRPFTFEGRGGPDDVSAHTLRHSLAWRMLRVETGNILYDVRNR 180 Query: 222606 LGHSTMSSTQ-IYTH 222647 L H ++ +T+ Y H Sbjct: 181 LRHRSLQTTERTYDH 195 Score = 48.9 bits (115), Expect = 0.001 Identities = 57/188 (30%), Positives = 75/188 (39%), Gaps = 20/188 (10%) Frame = +3 Query: 488205 LSLDDIEAMLATT-GGEEPAQIRAAALLELLYATGARISEAVGVDLDDLDLETSLVRL-- 488375 L D +EAM A G P R A+L LLY TG R +E GVD LD++ L+R+ Sbjct: 10 LKPDQVEAMRAAVLEGSHPE--RDNAILTLLYDTGLRRAELSGVDRAMLDVDDELLRIPS 67 Query: 488376 -----YGKGGKERIVPFGSHAATALGAWVSRTRPXXXXXXXXXXXXXXLFLNARGTRLSR 488540 Y R F L RT LF + TR+S Sbjct: 68 RIQKGYPNDRDPRPATFELDRGENL-----RTIATLNAYLEVRDDVDALFPSQMSTRMSP 122 Query: 488541 QTAWQIVKDAGELAGLEA----------EVSPHTFRHSFATHLL--EGGADIRVVQELLG 488684 + +VK A A + +VS HT RHS A +L E G + V+ L Sbjct: 123 KGVNDVVKRAARRADIRPFTFEGRGGPDDVSAHTLRHSLAWRMLRVETGNILYDVRNRLR 182 Query: 488685 HASVTTTQ 488708 H S+ TT+ Sbjct: 183 HRSLQTTE 190 >ref|NP_039733.1|predicted 33.2Kd protein Length = 290 Score = 53.1 bits (126), Expect = 7e-05 Identities = 72/294 (24%), Positives = 121/294 (41%), Gaps = 48/294 (16%) Frame = -3 Query: 846835 SPSRANDFVQCPLKFRFRSIDKLPEPPSQAAFRGTVVHSVLEKLFELPAARRTQDV--AE 846662 S S+ N + +CP ++ IDK+ P+ +GT H+V E + A R + A+ Sbjct: 12 SVSQLNQYTRCPQAYKLARIDKVWARPAAWLPQGTAFHTVAEVYEKALAEGREMSLERAQ 71 Query: 846661 SLLRPSWDE----LVDKDP-------------------------EVLEIF----GDEGEK 846581 + R + + L D+ P E +E F D+G++ Sbjct: 72 EIFREEYAKDIGALCDETPNFEWWFWSGPYNGERDIERRFHLGLEQVEKFIAWRKDKGQQ 131 Query: 846580 ETFFTTAANLLRAYFSLEFPEHLEPEQTEKYVRTQLD---NGLELRGFIDRVDVAPGGEK 846410 +TT + + + + E EQ + + + +G+ +RGFID V V GE Sbjct: 132 --IWTTPGRGICSTEAWKDTNCKECEQPKPAIELPFNIELDGIRVRGFIDAV-VVVNGEL 188 Query: 846409 RLVDYKTGKQPKPQYGREAHFQMGFYAL-------VEYRLTGELVHTLQLMYLGSQSILK 846251 R+ DYKTG P FQ+G YAL VE TG+ ++ + +K Sbjct: 189 RVRDYKTGNSPGDD------FQLGVYALAVAMTYDVEAPKTGD-------YFMAGKKGIK 235 Query: 846250 SHPTMS-DI-ERTQFEIESIWKDIIASAEADRWRPKKSP-LCNWCTFKPLCPAW 846098 + PT D+ + T+ I + ++ A +A + P P C +C CP + Sbjct: 236 AKPTAPYDLTDWTRERITERFHEVEARIQAGDFEPLPEPDKCGFCDVNYSCPVF 289 Score = 41.2 bits (95), Expect = 0.27 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 4/132 (3%) Frame = -3 Query: 1211755 KVTGRLDRIERTPEGIRIVDFKTGKNTPTGQEMPRHAQLGVYQEAINSGSITIGDDQVVD 1211576 +V G +D + +R+ D+KTG N+P G + QLGVY A+ D Sbjct: 173 RVRGFIDAVVVVNGELRVRDYKTG-NSP-GDDF----QLGVYALAVA---------MTYD 217 Query: 1211575 AKAYGAELVFLRYTKQKKREQSALEIDEDPGWARDLI----NDVSGRMRAAEFPARVEPQ 1211408 +A F+ K K + +A D W R+ I ++V R++A +F EP Sbjct: 218 VEAPKTGDYFMAGKKGIKAKPTAPYDLTD--WTRERITERFHEVEARIQAGDFEPLPEPD 275 Query: 1211407 KCMSCPVRTSCP 1211372 KC C V SCP Sbjct: 276 KCGFCDVNYSCP 287 >ref|NP_777346.1|hypothetical protein Length = 395 Score = 53.1 bits (126), Expect = 7e-05 Identities = 64/214 (29%), Positives = 90/214 (42%), Gaps = 6/214 (2%) Frame = +1 Query: 66445 FLRALADKTPGRAKTTKSVLKSMFDLAVRHDALRTNPVREVRLPTKRK-KPVQALTIDEV 66621 F LA +P + L++ A+R D L NP+ V P +P +A +EV Sbjct: 122 FFAELAGFSPSHRRHIYQFLRAALRDAMRADLLDQNPMDAVDPPRGGAVRPAKAWKPEEV 181 Query: 66622 GTLREGLRKWQAADGVKGPTRSTELLDVVDLMLGTGMRIGEVLALRWSDVDLGE--HPRL 66795 E ++ L + LML T +R GE LALRW D + G+ H R Sbjct: 182 ARFLEA-------------SKGHRLYPLFALMLATRLRPGEALALRWEDWE-GDVLHVRH 227 Query: 66796 TV--SGTLVPIKEKGLRRQAHTKTASGFRVLTLPAFVVEVLLRRSVESIPTETNA-VFPS 66966 T+ GTL P K G + + L A+ E L + + + +FPS Sbjct: 228 TLRRDGTLGPAKTPGSVAPIYLDPDT----QALLAWWRERLEEEKASTPDWQDHGLMFPS 283 Query: 66967 GAGTWKWPNNYRRALRAALKEMENTSGITPHVFR 67068 GT NN++RA AL+E S ITPH R Sbjct: 284 SKGTPLEYNNFKRAF-YALQEKAGVSRITPHGLR 316 Score = 45.1 bits (105), Expect = 0.018 Identities = 56/217 (25%), Positives = 87/217 (40%), Gaps = 11/217 (5%) Frame = +3 Query: 488124 ALGEGLAATDPASEVSPPQEG-LRLPKALSLDDIEAMLATTGGEEPAQIRAAALLELLYA 488300 A+ L +P V PP+ G +R KA +++ L + G R L L+ A Sbjct: 148 AMRADLLDQNPMDAVDPPRGGAVRPAKAWKPEEVARFLEASKGH-----RLYPLFALMLA 202 Query: 488301 TGARISEAVGVDLDDLDLETSLVR--LYGKGGKERIVPFGSHA-------ATALGAWVSR 488453 T R EA+ + +D + + VR L G GS A AL AW Sbjct: 203 TRLRPGEALALRWEDWEGDVLHVRHTLRRDGTLGPAKTPGSVAPIYLDPDTQALLAWWRE 262 Query: 488454 TRPXXXXXXXXXXXXXXLFLNARGTRLSRQTAWQIVKDAGELAGLEAEVSPHTFRHSFAT 488633 +F +++GT L + E AG+ + ++PH RH++ + Sbjct: 263 RLEEEKASTPDWQDHGLMFPSSKGTPLEYNNFKRAFYALQEKAGV-SRITPHGLRHTYTS 321 Query: 488634 HLLEGGADIRVVQELLGHASVT-TTQIYTKVSEETLR 488741 L G +VV L HA T T ++Y ++ EE R Sbjct: 322 LALRAGLPPKVVAARLRHADPTFTVKVYQQLMEEDHR 358 >ref|YP_024485.1|hypothetical protein Length = 1351 Score = 52.4 bits (124), Expect = 1e-04 Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 2/173 (1%) Frame = +1 Query: 1796401 ARAVFTVLSDKGMSNTNIAGILGNWSQESGVDPTSVQGIMDSPYKMTPKKREKAESFSGG 1796580 A ++ L KG+S+ + ++GN QES +DP + + SG Sbjct: 1128 AEKMYKFLKGKGLSDNQVGAVMGNLQQESNLDPNA------------------KNASSGA 1169 Query: 1796581 LGLGQWTGSRNSKLKAYAKTKSTDWWTIELQMNFMADTKGDDAQSVQVFEDMIKNELDSV 1796760 G+ QW G+R + L+ +AK+K +++Q++++ D +S + ++ ++ S+ Sbjct: 1170 FGIAQWLGARKTGLENFAKSKGKKSSDMDVQLDYLWKEMQSDYESNNL-KNAGWSKGGSL 1228 Query: 1796761 SAATTHFHDKWEKAGAPN--MPNRIKQAEKWFKLMKDWKSGDKAQAAGSTPEQ 1796913 T F +E+ GA M R+ A+++ K G A ST ++ Sbjct: 1229 EQNTKAFATGFERMGANEAMMGTRVNNAKEFKKKYGGSGGGGGGGALSSTYQE 1281 >ref|NP_803346.1|tail fiber protein Length = 2066 Score = 52.4 bits (124), Expect = 1e-04 Identities = 52/244 (21%), Positives = 88/244 (36%), Gaps = 11/244 (4%) Frame = -1 Query: 56586 QTETGKKMWSAFMDWLGQAWEWIKXXXXXXXXXXXXXXXXAWNWVKDTSVAIWNGFISWI 56407 Q ET ++ W G AW+ +K N F + Sbjct: 1195 QEETARRNRENIKKWFGNAWDGVKTKTGEAFSKMGRNA---------------NHFGGEM 1239 Query: 56406 VGLWNGIIGTAKAVFLGIGTAIITAWNWIKTK----TSDVWNAIINWIKDTWNKIITTIS 56239 +W+GI GI + + ++W+ K+ T + N+ W W + +T Sbjct: 1240 KKMWSGI--------KGIPSKLSSSWSSAKSSVGYHTKAIANSTGKWFGKAWQSVKSTTG 1291 Query: 56238 DAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKVQQIKNWITNTWNR 56059 N+ K SDA + +W G + A SA +G + + N + W+ Sbjct: 1292 SIYNQTKQKYSDASDKAWAHSKSIWRGTSKWFSNAYKSA----KGWLIDMANKSRSKWD- 1346 Query: 56058 VKNTTSNAWSGIKSAVRNGINGAVNFVRRLPG-------RALSALGNIGSKLYNSGKAMI 55900 N +S AWS KS + N + L G RA I S +++ K++ Sbjct: 1347 --NISSTAWSNAKSVWKGTSKWFSNSYKSLKGWTGDMYSRAHDRFDAISSSAWSNAKSVF 1404 Query: 55899 DGFK 55888 +GF+ Sbjct: 1405 NGFR 1408 >ref|NP_958203.1|gene 27 protein Length = 157 Score = 52.4 bits (124), Expect = 1e-04 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 2/116 (1%) Frame = -3 Query: 1140898 GTVAADPQSRTLPSGRACASFRLAVNHWRLDKGTGEYLSDTTSWFSVDCYGPLASNCSMS 1140719 G + DP+ R PSG A A+ +A + DK TGE + T W V G LA S Sbjct: 13 GRLGHDPEIRYSPSGTAFANLTVATSEQWRDKQTGEQ-KEQTEWHRVVMSGKLAEIASEY 71 Query: 1140718 LHQGMSVVVQGTLKIREWSTDEKRGIAPTVVAEHIGPDLRY--GTANYQKSSNPNR 1140557 L +G V ++G L+ R+W + T V +G ++ G + S+P R Sbjct: 72 LRKGSEVYLEGKLRTRKWQDQSGQDRFTTEVIVGVGGTMQMLGGKQGGNEQSSPQR 127 >ref|NP_536628.1|Int Length = 345 Score = 52.4 bits (124), Expect = 1e-04 Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 9/205 (4%) Frame = +3 Query: 488151 DPASEVSPPQEGLRLPKALSLDDIEAMLATTGGEEPAQIRAAALLELLY------ATGAR 488312 +P ++ P + R L DI+ L GG E + R+ ++ E++ ATGAR Sbjct: 156 NPLDDIEPIKVNQRALAYLDKADIQPFLQRLGGFE-SDGRSVSIPEIVLIAKICLATGAR 214 Query: 488313 ISEAVGVDLDDLDLETSLVRLYGKGGKERIVPFGSHAATALGAWVSRTRPXXXXXXXXXX 488492 ISEA+ ++ + E L + KG + R VP + + Sbjct: 215 ISEALSLERSQIS-EFKLTFVETKGKRIRSVPISENLYKEI------------------- 254 Query: 488493 XXXXLFLNARGTRLSRQT---AWQIVKDAGELAGLEAEVSPHTFRHSFATHLLEGGADIR 488663 + ++ T++ T A + +K A E + + H RH+FATH + DI Sbjct: 255 ----MLASSSSTKIFSTTYGSAHRYIKKALPDYVPEGQAT-HVLRHTFATHFMMNRGDIL 309 Query: 488664 VVQELLGHASVTTTQIYTKVSEETL 488738 ++Q +LGH + T Y S + L Sbjct: 310 ILQRILGHQKIEQTMAYAHFSPDHL 334 Score = 48.9 bits (115), Expect = 0.001 Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 5/153 (3%) Frame = +3 Query: 222222 ILEMLYATAVRVSELTGLNRGDVDHQRSMITVLGKGNKERRVPYGKPAQTALQKWLSLRD 222401 I ++ AT R+SE L R + + + V KG + R VP + ++ Sbjct: 204 IAKICLATGARISEALSLERSQISEFK-LTFVETKGKRIRSVPISENLY---------KE 253 Query: 222402 TFASESSGDALFLGVRGGRIGARQVRELVHRYGAADPSAPDIGPHG-----LRHSAATHM 222566 + SS +F G HRY + PD P G LRH+ ATH Sbjct: 254 IMLASSSSTKIFSTTYGS----------AHRY--IKKALPDYVPEGQATHVLRHTFATHF 301 Query: 222567 LDGGADLRQIQELLGHSTMSSTQIYTHVSMQRL 222665 + D+ +Q +LGH + T Y H S L Sbjct: 302 MMNRGDILILQRILGHQKIEQTMAYAHFSPDHL 334 >ref|NP_076752.1|integrase Length = 394 Score = 52.4 bits (124), Expect = 1e-04 Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 16/229 (6%) Frame = +3 Query: 222012 VKSFFAYCVNQHGLSNNPAARLRTPKKDSRLPTVLKPQQAADLVSRQRTVHTEADNSDPI 222191 V+ F + ++ + +NP + PK RL + K + L + Q + E + P Sbjct: 153 VERIFKHALSLGLVKDNPCVNVIVPKV--RLESTEK--KVKHLTAEQLKIFFEYIGALPK 208 Query: 222192 EATKWVRDAAILEMLYATAVRVSELTGLNRGDVDHQ-----------RSMITVLGKGNKE 222338 E + +L A+ +R+ E L+ D+D + R++I K +K Sbjct: 209 EKYTNELMTGLCRLLVASGLRIGEAVALSWSDIDFKTGSVSVSKTTLRAVIQSTPKTDKS 268 Query: 222339 RRVPY-GKPAQTALQKW-LSLRDTFASESSG--DALFLGVRGGRIGARQVRELVHRYGAA 222506 R+ A L+ W L F S G + +F GG + + +R + ++ A Sbjct: 269 NRIVLIDSKAVEVLKHWELFQAKYFMSIGKGKQELVFPNRTGGVLDYQTMRPFLIKWLRA 328 Query: 222507 DPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGHSTMSST-QIYTHV 222650 P +G HG RHS A+ +L+ ++IQE LGH+++ T Y+H+ Sbjct: 329 C-QLPQVGFHGFRHSHASLLLNADVPYKEIQERLGHASIKMTMDTYSHL 376 Score = 43.9 bits (102), Expect = 0.041 Identities = 51/210 (24%), Positives = 99/210 (47%), Gaps = 21/210 (10%) Frame = +1 Query: 66346 QTIERYESIVEKIIGPALGEY-------LIMEATVSR----VDGFLRALADKTPGRAKTT 66492 +T++ ++ + + PALGEY +I++ V++ L + G+ K Sbjct: 87 RTVQIMQTRLNNYVLPALGEYRIDKVNSIILQQIVNQWMINASQPLNGAYHRPKGKGKDF 146 Query: 66493 K---SVLKSMFDLAVRHDALRTNPVREVRLPTKR----KKPVQALTIDEVGTLREGLRKW 66651 K ++++ +F A+ ++ NP V +P R +K V+ LT +++ E + Sbjct: 147 KIYFNIVERIFKHALSLGLVKDNPCVNVIVPKVRLESTEKKVKHLTAEQLKIFFEYI--- 203 Query: 66652 QAADGVKGPTRSTELLD-VVDLMLGTGMRIGEVLALRWSDVDLGEHPRLTVSGTLVPIKE 66828 + + EL+ + L++ +G+RIGE +AL WSD+D +G+ V + + Sbjct: 204 ---GALPKEKYTNELMTGLCRLLVASGLRIGEAVALSWSDIDF-------KTGS-VSVSK 252 Query: 66829 KGLRR--QAHTKTASGFRVLTLPAFVVEVL 66912 LR Q+ KT R++ + + VEVL Sbjct: 253 TTLRAVIQSTPKTDKSNRIVLIDSKAVEVL 282 >ref|NP_075503.1|protease Length = 257 Score = 52.0 bits (123), Expect = 2e-04 Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 2/135 (1%) Frame = -1 Query: 1103097 ADISLYINSPGGSVTAGMAIYDTMQYIKPDVSTVAMGMAASMGQFLLSSGAPGKRYATPH 1102918 ++I ++INS GGSV G AIY+ ++ ++ +AAS+ + SG + + Sbjct: 52 SEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSG--DTIFMHKN 109 Query: 1102917 ARILMHQPLGGIGGTATDIKIQAELILHMKKQMAELTAEQTGKTLEQ--ILKDNDRDHWF 1102744 + +++H G A +++ A+L L ++ K L+Q + + D + W Sbjct: 110 SFLMIHNSWVMTVGNAEELRKTADL-LEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWL 168 Query: 1102743 TAEEALEYGFIDKMV 1102699 TAEEAL +G ID+++ Sbjct: 169 TAEEALSFGLIDEIL 183 >ref|NP_803338.1|scaffolding protease Length = 257 Score = 52.0 bits (123), Expect = 2e-04 Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 2/135 (1%) Frame = -1 Query: 1103097 ADISLYINSPGGSVTAGMAIYDTMQYIKPDVSTVAMGMAASMGQFLLSSGAPGKRYATPH 1102918 ++I ++INS GGSV G AIY+ ++ ++ +AAS+ + SG + + Sbjct: 52 SEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSG--DTIFMHKN 109 Query: 1102917 ARILMHQPLGGIGGTATDIKIQAELILHMKKQMAELTAEQTGKTLEQ--ILKDNDRDHWF 1102744 + +++H G A +++ A+L L ++ K L+Q + + D + W Sbjct: 110 SFLMIHNSWVMTVGNAEELRKTADL-LEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWL 168 Query: 1102743 TAEEALEYGFIDKMV 1102699 TAEEAL +G ID+++ Sbjct: 169 TAEEALSFGLIDEIL 183 >ref|NP_046874.1|putative DNA primase Length = 129 Score = 52.0 bits (123), Expect = 2e-04 Identities = 23/55 (41%), Positives = 32/55 (58%) Frame = +2 Query: 630785 KGLCPFHDEKTPSFTVRPQVGMYHCFGCGESGDVFSFLQKVEQLSFVETVEALAG 630949 K LCPFH ++TPS V + ++C CG GDV S ++ E++SF E V G Sbjct: 28 KCLCPFHGDETPSAAVSYDLQGFNCLACGVRGDVISIIRHEEEVSFAEAVRIAEG 82 >ref|NP_899461.1|PnuC Length = 221 Score = 52.0 bits (123), Expect = 2e-04 Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 14/167 (8%) Frame = +2 Query: 730070 VQILGSILLFAASISAGLGGNASRQVVIIVAAVWGWTQWNKSREAAGEVLVRWATWKERF 730249 V +G +LF L + Q I +++G+ QWNK + EV +R+ ++ Sbjct: 51 VNCIGFAILF---FQIQLYSDVLLQGFFIAMSIFGFYQWNK--QGTDEVKIRYLKMRKFA 105 Query: 730250 LLIGALLLGTAVFGYVLA-----LGGWSWNPY---------PDAYIFIGSLVAMYAQGRA 730387 I A L+GTA Y + G Y DA+ + S++A + Sbjct: 106 GSIIATLIGTAALAYFIDPIMNFSGSLLVTDYVHAPAELAVQDAFTTVASIMAFMLMIQR 165 Query: 730388 IVEFWFVWLAVDLVGIPLAVAGGLVFSGAVYLIFLVMVVIGFIDWSK 730528 VE W+ W+AV++V I G++ A Y IFL + + W K Sbjct: 166 KVEAWWYWVAVNVVCIVNYSTQGVIVVAAEYCIFLANALYAIVIWHK 212 >ref|NP_818251.1|gp200 Length = 113 Score = 51.6 bits (122), Expect = 2e-04 Identities = 24/48 (50%), Positives = 31/48 (64%) Frame = -2 Query: 1162196 DLRIDVYRSSGPGGQSVNTTDSAVRITHVPTGITASCQNEKSQLQNKE 1162053 D ++ R G GGQ+ NT D+AVRI H P+G Q E+SQLQNK+ Sbjct: 8 DCVVETKRGHGNGGQNRNTRDTAVRIVHPPSGAVGESQEERSQLQNKK 55 >ref|YP_025038.1|putative minor tail protein Length = 1299 Score = 51.6 bits (122), Expect = 2e-04 Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 15/213 (7%) Frame = -1 Query: 56571 KKMWSAFMDWLGQAWEWIKXXXXXXXXXXXXXXXXAWNWVKDTSVAIWNGFISWIV---- 56404 +K W+ F + +G+ W + + WNGF + + Sbjct: 674 QKEWNGFWNDVGKGWTSFWNDVNKRNSSAQKQQQKQQDAANKQAQKDWNGFWNDVGKGWN 733 Query: 56403 GLWNGIIGTAKAVFLGIGTAIITAWNWIKTKTSDVWNAIINWIKDTWNKIITTISDAVNK 56224 G WN + + A IK W+ N + W+ + + +N Sbjct: 734 GFWNDVNKKNSSAQQQQQKQQDAANKQIKKDWDSFWSNASNGWNNFWSDTLKNAKNGMND 793 Query: 56223 VKNWISDA-------WTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKVQ----QIKNWI 56077 K+ I W + T++ WNG + + S + TV+G + +I + Sbjct: 794 TKSRIDSGNDSIHKGWDSFWSSTSENWNGFWGNVGKNAQSGMSTVRGWISDGNSKIDSGW 853 Query: 56076 TNTWNRVKNTTSNAWSGIKSAVRNGINGAVNFV 55978 + W+ +K+ + W GIK+ NG+N +N + Sbjct: 854 RSMWSGIKSYFGSIWDGIKNDAENGMNAVINVI 886 Score = 43.9 bits (102), Expect = 0.041 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 12/130 (9%) Frame = -1 Query: 56430 WNGFIS-WIVGLWNGIIGTAKAVFLGIGTAIITAWNWIKTKTSDVWNAIINWIKDTWNKI 56254 WN F S + NG+ T + G +I W+ + TS+ WN W + Sbjct: 776 WNNFWSDTLKNAKNGMNDTKSRIDSG-NDSIHKGWDSFWSSTSENWNGF-------WGNV 827 Query: 56253 ITTISDAVNKVKNWISDA-----------WTMIKTMTAKLWNGIKMAIARAIVSAVRTVQ 56107 ++ V+ WISD W+ IK+ +W+GIK + + + + Sbjct: 828 GKNAQSGMSTVRGWISDGNSKIDSGWRSMWSGIKSYFGSIWDGIKNDAENGMNAVINVIN 887 Query: 56106 GKVQQIKNWI 56077 G + I NW+ Sbjct: 888 GAIGGI-NWV 896 >ref|YP_077256.1|group I glycosyltransferase Length = 329 Score = 51.2 bits (121), Expect = 3e-04 Identities = 23/62 (37%), Positives = 38/62 (61%) Frame = +3 Query: 1071459 VSDEEYAGLLEGATALVTASQEEGFGLPVIEAMAQGVPVAISDIAIFHEIAGDAAVYFDP 1071638 +SD E + L G+ ++ASQ+EGF LP++EA A G+P ++DI + E+ ++F Sbjct: 229 ISDTELSLLYAGSDVYLSASQDEGFELPLVEAAAHGLPAVVTDIPVHKELGKHLKLFFYS 288 Query: 1071639 DD 1071644 D Sbjct: 289 SD 290 >ref|NP_075512.2|hypothetical protein Length = 2067 Score = 51.2 bits (121), Expect = 3e-04 Identities = 50/246 (20%), Positives = 86/246 (34%), Gaps = 15/246 (6%) Frame = -1 Query: 56580 ETGKKMWSAFMDWLGQAWEWIKXXXXXXXXXXXXXXXXAWNWVKDTSVAIWNGFISWIVG 56401 ET ++ W G AW+ +K N F + Sbjct: 1198 ETARRNRENIKKWFGNAWDGVKSKTGEAFSKMGRNA---------------NHFGGEMKK 1242 Query: 56400 LWNGIIGTAKAVFLGIGTAIITAWNWIKTK----TSDVWNAIINWIKDTWNKIITTISDA 56233 +W+GI GI + + + W+ K+ T + N+ W W + +T Sbjct: 1243 MWSGI--------KGIPSKLSSGWSSAKSSVGYHTKAIANSTGKWFGKAWQSVKSTTGSI 1294 Query: 56232 VNKVKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKVQQIKNWITNTWNRVK 56053 N+ K SDA + +W G + A SA K W+T+ N+ + Sbjct: 1295 YNQTKQKYSDASDKAWAHSKSIWRGTSKWFSNAYKSA-----------KGWLTDMANKSR 1343 Query: 56052 ----NTTSNAWSGIKSAVR-------NGINGAVNFVRRLPGRALSALGNIGSKLYNSGKA 55906 N +S AWS KS + N ++ + RA I S +++ K+ Sbjct: 1344 AKWDNISSTAWSNAKSVWKGTSKWFSNSYKSLKDWTGDMYSRAHDRFDAISSSAWSNAKS 1403 Query: 55905 MIDGFK 55888 + +GF+ Sbjct: 1404 VFNGFR 1409 >ref|YP_024952.1|putative DNA polymerase protein Length = 681 Score = 51.2 bits (121), Expect = 3e-04 Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 8/137 (5%) Frame = +1 Query: 755083 DDARLLTADYSQIEMRIMAHLSGDAALIQAFKD-----GEDLHSYVGSKVFGVGIDEVDS 755247 D RL +D S IE R A L+G+ +QAF+D G DL+ ++ FGV ++ VD Sbjct: 369 DGKRLYVSDLSNIEGRDAAWLAGEKWKLQAFRDFDAGIGADLYKLAYARAFGVAVEAVDK 428 Query: 755248 AMRSKVKAMSYGLVY--GLSAY-GLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQ 755418 MR K M L Y G+ A+ + + +D + + F A+ EIV + Sbjct: 429 YMRQLGKVMELALAYEGGVGAFVTFTMTYKMDLDSIRAAV------FAALDTVDPEIVRE 482 Query: 755419 ARANGYTETIMGRRRYL 755469 AR G E + +RR L Sbjct: 483 AR--GMWEWAVKKRRTL 497 >ref|NP_813744.2|integrase Length = 594 Score = 51.2 bits (121), Expect = 3e-04 Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 5/118 (4%) Frame = +2 Query: 1044959 YVDHGVSG--ARASRPEFNRALDALI--DGDTLVITTLDRLGRS-TQNMLTFAEELRGRG 1045123 +VD G SG +R +F R + + +GD +V+ L RL R + L EL+ G Sbjct: 65 FVDVGRSGWDPNVTRADFERMMGEVRAGEGDVVVVNELSRLTRKGAHDALEIDNELKKHG 124 Query: 1045124 AGLRVLNLGGGDVDTATPIGSMLFTIMAALAQMEHEIKRERITDSIKKRRDAGLDLGG 1045297 +R +++ +DT+TPIG +F ++AALA+ + ++K ER +K +D LGG Sbjct: 125 --VRFMSVLEPFLDTSTPIGVAIFALIAALAKQDSDLKAER----LKGAKDEIAALGG 176 >ref|NP_813702.1|gp43 Length = 729 Score = 51.2 bits (121), Expect = 3e-04 Identities = 35/115 (30%), Positives = 57/115 (49%) Frame = -1 Query: 56223 VKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKVQQIKNWITNTWNRVKNTT 56044 V NW W K + LW+ +K A + G IK+W T + T Sbjct: 501 VANW-DTIWAYTKKIFQWLWDWVKKIFAW-LKDLFLNFTGPGLIIKHWDT-----IVAKT 553 Query: 56043 SNAWSGIKSAVRNGINGAVNFVRRLPGRALSALGNIGSKLYNSGKAMIDGFKDGI 55879 +A++ +K+ ++ ++ VNFV+ LPGR LSA ++ S + G +IDG K+G+ Sbjct: 554 KSAFNWVKNLAKDALDAVVNFVKGLPGRILSAGRSLLSAAKSLGGYVIDGIKNGL 608 Score = 42.4 bits (98), Expect = 0.12 Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Frame = -1 Query: 56463 WNWVKDTSVAIWNGFISW-----IVGLWNGIIGTAKAVFLGIGTAIITAWNWIKTKTSDV 56299 W+WVK + + F+++ I+ W+ I+ K+ F NW+K D Sbjct: 519 WDWVKKIFAWLKDLFLNFTGPGLIIKHWDTIVAKTKSAF-----------NWVKNLAKDA 567 Query: 56298 WNAIINWIKDTWNKIITTISDAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAV 56119 +A++N++K +I++ ++ K+ IK +KL G ++A A+ A Sbjct: 568 LDAVVNFVKGLPGRILSAGRSLLSAAKSLGGYVIDGIKNGLSKL-GGFASSLASAVSRAA 626 Query: 56118 RTVQGKVQQIKNW 56080 + V + NW Sbjct: 627 KGAINGVIDLLNW 639 >ref|NP_817661.1|gp72 Length = 271 Score = 50.4 bits (119), Expect = 4e-04 Identities = 61/273 (22%), Positives = 114/273 (41%), Gaps = 29/273 (10%) Frame = -3 Query: 846835 SPSRANDFVQCPLKFRFRSIDKLPEPPSQAAFRGTVVHSVLE--KLFELPAARRTQDVAE 846662 S S+ + +CP ++ +DK+ + P+ +G+ VH+VLE + EL + + A+ Sbjct: 9 SVSQLKQYERCPYSYKLARVDKVWQRPAAWLPQGSAVHTVLEEYRRRELDGDPMSLEEAQ 68 Query: 846661 SLLRPSWDELVDKDPEVLEIFGDEGEKETFFTTAANLLRAYFSLEFPEHLEPEQTEKY-- 846488 + + + + V + +V F D + + A++L R + H+ EQ EK+ Sbjct: 69 EMFKEEYAKEVSQYTDVTPNF-DWWFRSGRYDGASDLERRW-------HIGLEQIEKFFA 120 Query: 846487 -------------------VRTQLD---NGLELRGFIDRVDVAPGGEKRLVDYKTGKQPK 846374 + D +G+ +RG+ID V G + DYKTG P Sbjct: 121 WTEGHPEEVIWIAPDGTPGIELGFDIDLDGVLVRGYIDTVLRDSDGNVIVRDYKTGNTPG 180 Query: 846373 PQYGREAHFQMGFYALVEYRLTGELVHTLQLMYLGSQSILKSHPTMS-DI-ERTQFEIES 846200 FQ+G Y++ G + Y+ + +K PT D+ E + + Sbjct: 181 DD------FQLGVYSVALAETYGIEPPQIGDYYMAGKKGVKGKPTYPYDLGEWPRERVAE 234 Query: 846199 IWKDIIASAEADRWRPKKSP-LCNWCTFKPLCP 846104 ++++ + A+R+ P P C +C CP Sbjct: 235 KFRELEENIAAERFDPDPEPDKCAFCDVSYHCP 267 >ref|NP_542556.1|putative phage C31 protein gp16-like protein Length = 234 Score = 50.1 bits (118), Expect = 6e-04 Identities = 48/180 (26%), Positives = 73/180 (40%), Gaps = 10/180 (5%) Frame = +3 Query: 156849 LGNVIASQHGSVLEHANFTFVLHNVSRVLTHELIRHRAGSAFSQESLRYVRLADIPFWFP 157028 +G ++ H EH F + +SR ++ RHR S F +S RY +D P Sbjct: 51 MGELLRRGHFGPFEHIQAFFAVEGLSRSAMAQVTRHRHMS-FDVQSQRYCDFSDKNIVIP 109 Query: 157029 EW-----AREDSELME-----RSLKVLDTLEEHQKWMTEHFELDEASTKFSHKKHMTSFM 157178 A ED L + D LE H EL E + K F+ Sbjct: 110 PGDKKNPAAEDVVLGQYDGPAEDFTGADALEGH---FVNSVELYEKLIEQGMAKEDARFV 166 Query: 157179 RRFAPEGLATGIVYTANLRSLRHVIEMRTAKGAEEEIRLVFNKIGEAMREEAPAIFSDYE 157358 P G+ + ++AN R+L H ++R A+ E R K+ E +E +P +F+ YE Sbjct: 167 ---LPIGVEVDMTFSANARTLMHFFDLRKNMKAQWEAREFATKVLEECKEWSPLVFNAYE 223 >ref|NP_852555.1|Site-specific recombinase Length = 490 Score = 50.1 bits (118), Expect = 6e-04 Identities = 57/239 (23%), Positives = 97/239 (40%), Gaps = 20/239 (8%) Frame = -2 Query: 1007090 AAYVRASMDRKGDRWTVDTQLRKIRALAEAK--DWNVVEVYEDNAVSATKKRRAGTRWAE 1006917 A YVR S DR +++ Q+ R E +W+ +Y+D AVS GT W E Sbjct: 7 AVYVRVSTDRDEQVSSIENQIDICRYWIEKNGYEWDENSIYKDEAVS-------GTAWLE 59 Query: 1006916 ------MLEDARAGRFSMVVAVDMDRLLRSTKDL----NTLIDLGLRVVTV--------D 1006791 +LE R VV + RL R +D L+ G+R+VT+ + Sbjct: 60 RHAMQLILEKVRRKELDTVVFKSIHRLGRDLRDALEIKEILLGHGVRLVTIEEGYDSYYE 119 Query: 1006790 GEIDLSTADGEFRATMLAALARFEARRKAERQIRSNERRRAEGIPTSAWKAFGWTRDGEL 1006611 G+ DL A+ L ++R E GI +K + + Sbjct: 120 GKNDLKFEMYAMFASQLPKTVSVSVSAALAAKVRRGE--YTGGIVPYGYKIV--DQKYTI 175 Query: 1006610 IPEEAEAIQRAFDAFLGEPSLSIRRIREDLNAAGHLTARGSEFSVDAVRYLLANPLYAG 1006434 EEAE +++ ++ + + L +I + +N G + G ++ ++R ++ N Y G Sbjct: 176 NEEEAELVRKMYELY--DNGLGYMKIADAINDMGVPSRTGKLWAYPSIRAIITNAAYKG 232 >ref|NP_958623.1|77ORF007 Length = 401 Score = 50.1 bits (118), Expect = 6e-04 Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 18/181 (9%) Frame = +3 Query: 488259 AQIRAAALLELLYATGARISEAVGVDLDDLDLETSLVRLYGK----------GGKERIVP 488408 A+I A +E+ TG RI E + + + D+DL+ + + G G K+ Sbjct: 212 ARILVAGAVEVQALTGMRIGELLALQVKDVDLKNKTIAINGTIHRIKCNAGFGHKDTTKT 271 Query: 488409 FGSHAATALGAWVSRT-------RPXXXXXXXXXXXXXXLFLNARGTRLSRQTAWQIVKD 488567 GS A+ + ++ +F +G + + + Sbjct: 272 AGSRRKIAINSRIANVLKKIMLENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSS 331 Query: 488568 AGELAGLEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHA-SVTTTQIYTKVSEETLRE 488744 A E + +V+ HT RH+ + L E ++ + + +GH TT ++YT V+E+ RE Sbjct: 332 AAESLNINKKVTTHTLRHTHISLLAEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRE 391 Query: 488745 V 488747 + Sbjct: 392 L 392 Score = 45.1 bits (105), Expect = 0.018 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 9/130 (6%) Frame = +1 Query: 66706 VDLMLGTGMRIGEVLALRWSDVDLGEHPRLTVSGTLVPIK-EKGLRRQAHTKTASGFRVL 66882 V++ TGMRIGE+LAL+ DVDL ++ + ++GT+ IK G + TKTA R + Sbjct: 220 VEVQALTGMRIGELLALQVKDVDL-KNKTIAINGTIHRIKCNAGFGHKDTTKTAGSRRKI 278 Query: 66883 TLPAFVVEVLLRRSVESIP--------TETNAVFPSGAGTWKWPNNYRRALRAALKEMEN 67038 + + + VL + +E+ + +F + G + + L +A + + Sbjct: 279 AINSRIANVLKKIMLENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNI 338 Query: 67039 TSGITPHVFR 67068 +T H R Sbjct: 339 NKKVTTHTLR 348 >ref|NP_039722.1|predicted 14.5Kd protein Length = 130 Score = 49.7 bits (117), Expect = 7e-04 Identities = 21/48 (43%), Positives = 30/48 (62%) Frame = +2 Query: 630785 KGLCPFHDEKTPSFTVRPQVGMYHCFGCGESGDVFSFLQKVEQLSFVE 630928 K LCPFH ++TPS V + Y+C CG GDV S ++ E+++F E Sbjct: 28 KCLCPFHGDETPSAAVSYDLQGYNCMACGVRGDVISIIRHEEEVTFAE 75 >ref|NP_542557.1|deaminase protein deoxycytidine triphosphate-like protein Length = 182 Score = 49.7 bits (117), Expect = 7e-04 Identities = 36/121 (29%), Positives = 61/121 (50%) Frame = +2 Query: 585698 AIDFVLEPFERKVVPTGIAIALPIGTAGFVHPRSGLSSKHGVTVINAPGTIDAGYRGEIK 585877 +I++ L+P + + T + +P G +H RS + + G+ + NA G ID G+RG+I Sbjct: 66 SIEYSLKPGDFALAHTEEMVTIPPDMVGVLHGRSSVG-RLGLFIHNA-GFIDPGFRGQIT 123 Query: 585878 VPLINLDARTPVRISRGDRIAQLVIQEIKQADFTLVESLDDSDRGAGGFGSTGGVKAGLT 586057 + L N + P+++ G R QL I E+K T+ +S + G TG + L Sbjct: 124 LELFNA-SNHPIQLKEGMRACQLAIHELK----TMPDSAYSDENGNKYSDQTGATPSRLY 178 Query: 586058 E 586060 E Sbjct: 179 E 179 >ref|NP_052288.1|hypothetical protein Length = 334 Score = 49.7 bits (117), Expect = 7e-04 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Frame = -3 Query: 1781761 LWFTGVRRDEAPTRANTPLVTFDEKN--GLVKVNPLAAWSFDDLLDYAGAFDVPVNPLLS 1781588 LW GVR E+P RA P+ D N GL P+ W+ +D+ A + NPL Sbjct: 164 LW-QGVRAQESPARAALPMWEEDADNTPGLHVYRPILNWTHEDVFALAKRHGIKPNPLYQ 222 Query: 1781587 QGYPSIGCQPC 1781555 QG +GC PC Sbjct: 223 QGCSRVGCMPC 233 >ref|NP_945089.1|gp58 Length = 297 Score = 49.7 bits (117), Expect = 7e-04 Identities = 40/150 (26%), Positives = 64/150 (42%) Frame = +3 Query: 1493880 LTMLSMIERHGTVTAAAEALHYSPSTVSHQVKQLATELGVVLLEQRGRNIRLTPAAHSLL 1494059 L RHG T AAE L+ + VS QV +L T LG L + + + LT A Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71 Query: 1494060 SHVDVMSAEWERALADLDAYSTTVTGSITLSAFSTAASILLPQTMRALNEEFPHLATQTI 1494239 V + A+ A A + T S+T++ S A++ L + + E P ++ + + Sbjct: 72 DRVHAILADCVEATALVMKEQT--PHSLTIACASGTATLFLADRIAEFSAEHPEVSVRIL 129 Query: 1494240 EAEPSECYDLLLAGDVDLGIVAVTTDTPAG 1494329 E L A + D+G+ + P G Sbjct: 130 VREG---VFNLNAAEFDIGVYYIRDVPPPG 156 >ref|NP_695088.1|putative helicase Length = 443 Score = 49.3 bits (116), Expect = 0.001 Identities = 26/110 (23%), Positives = 57/110 (51%) Frame = -1 Query: 378729 IAESKGSLIFSQTVDSSSQAALLLQRAGIETKAVSSASKPHERRGAMQQFANGFAKVLCA 378550 +A+ K +++++ +V++S + G + A+S + P R AMQ F +G ++ Sbjct: 210 LAKGKQAIVYTHSVEASESVSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDGKLTIMVN 269 Query: 378549 PRILDEGIDVPDSDLAVVLSGSKQPRQTIQRLGRIIRRKDDGRHGRFVVL 378400 + EGID+P+ D+ ++L +P Q++ + R + R G+ ++ Sbjct: 270 CELFTEGIDLPNVDVCIML----RPTQSLSLYLQFAMRALNPREGKTAII 315 Score = 44.7 bits (104), Expect = 0.024 Identities = 17/70 (24%), Positives = 41/70 (58%) Frame = -2 Query: 618227 IMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVATDVAARG 618048 I++ + +A+E ++ +G+ + AI+G P + R+R + R+GK+ I+V ++ G Sbjct: 217 IVYTHSVEASESVSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDGKLTIMVNCELFTEG 276 Query: 618047 LDVERITLVV 618018 +D+ + + + Sbjct: 277 IDLPNVDVCI 286 Score = 41.2 bits (95), Expect = 0.27 Identities = 48/260 (18%), Positives = 110/260 (42%), Gaps = 21/260 (8%) Frame = +1 Query: 1216720 LVVVPTRELAKQVAADLVTASTQRDIDIMTIYGGMDFDPQIKKL--KSGVDVVVGTPGRL 1216893 +V P R V A + +T + I+ + + Q+ ++GVD+ + T + Sbjct: 26 MVQSPPRSGKTVVMAHIAKGATDKGNTILFFSHRKEINEQVVNTFKRNGVDMNLVTIDSV 85 Query: 1216894 LDLYGRKVLRLHKVRTVVLDEADEMLDLGFLPDVEKIINAV-------PAHRQTMLFSAT 1217052 + R + R+ + +++DEA + +L +E N++ PA F Sbjct: 86 TKI-ARNLDRIQEPSIILIDEAHHVKAKTYLKIIEYYSNSIVLMFTGTPARLDGSGFDDI 144 Query: 1217053 MPGAVITLARRYMSRPTHIRAHDNEDLSLLGKNTEQLVYRAHSMDKSEL----------- 1217199 V+ + +++ +I SL+ +T L R K + Sbjct: 145 ADDIVLGKSVKWLQDNGNIAPFKYYAPSLI--DTTNLKKRGGEFTKKSVDDTMKRVIYGD 202 Query: 1217200 VARMLQAEGRGR-TIIFTRTKRTADKLAAELGDRGFQVKPLHGDLGQAQREKALKSFREG 1217376 V R + +G+ I++T + ++ ++ ++G+ + G R++A+++FR+G Sbjct: 203 VIRHYEKLAKGKQAIVYTHSVEASESVSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDG 262 Query: 1217377 QVDVLVATDVAARGIDIDDV 1217436 ++ ++V ++ GID+ +V Sbjct: 263 KLTIMVNCELFTEGIDLPNV 282 >ref|NP_049999.1|putative helicase Length = 443 Score = 49.3 bits (116), Expect = 0.001 Identities = 26/110 (23%), Positives = 57/110 (51%) Frame = -1 Query: 378729 IAESKGSLIFSQTVDSSSQAALLLQRAGIETKAVSSASKPHERRGAMQQFANGFAKVLCA 378550 +A+ K +++++ +V++S + G + A+S + P R AMQ F +G ++ Sbjct: 210 LAKGKQAIVYTHSVEASESVSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDGKLTIMVN 269 Query: 378549 PRILDEGIDVPDSDLAVVLSGSKQPRQTIQRLGRIIRRKDDGRHGRFVVL 378400 + EGID+P+ D+ ++L +P Q++ + R + R G+ ++ Sbjct: 270 CELFTEGIDLPNVDVCIML----RPTQSLSLYLQFAMRALNPREGKTAII 315 Score = 44.7 bits (104), Expect = 0.024 Identities = 17/70 (24%), Positives = 41/70 (58%) Frame = -2 Query: 618227 IMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVATDVAARG 618048 I++ + +A+E ++ +G+ + AI+G P + R+R + R+GK+ I+V ++ G Sbjct: 217 IVYTHSVEASESVSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDGKLTIMVNCELFTEG 276 Query: 618047 LDVERITLVV 618018 +D+ + + + Sbjct: 277 IDLPNVDVCI 286 >ref|NP_049952.1|putative helicase Length = 443 Score = 49.3 bits (116), Expect = 0.001 Identities = 26/110 (23%), Positives = 57/110 (51%) Frame = -1 Query: 378729 IAESKGSLIFSQTVDSSSQAALLLQRAGIETKAVSSASKPHERRGAMQQFANGFAKVLCA 378550 +A+ K +++++ +V++S + G + A+S + P R AMQ F +G ++ Sbjct: 210 LAKGKQAIVYTHSVEASESVSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDGKLTIMVN 269 Query: 378549 PRILDEGIDVPDSDLAVVLSGSKQPRQTIQRLGRIIRRKDDGRHGRFVVL 378400 + EGID+P+ D+ ++L +P Q++ + R + R G+ ++ Sbjct: 270 CELFTEGIDLPNVDVCIML----RPTQSLSLYLQFAMRALNPREGKTAII 315 Score = 44.7 bits (104), Expect = 0.024 Identities = 17/70 (24%), Positives = 41/70 (58%) Frame = -2 Query: 618227 IMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVATDVAARG 618048 I++ + +A+E ++ +G+ + AI+G P + R+R + R+GK+ I+V ++ G Sbjct: 217 IVYTHSVEASESVSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDGKLTIMVNCELFTEG 276 Query: 618047 LDVERITLVV 618018 +D+ + + + Sbjct: 277 IDLPNVDVCI 286 >ref|NP_056709.1|putative helicase Length = 443 Score = 49.3 bits (116), Expect = 0.001 Identities = 26/110 (23%), Positives = 57/110 (51%) Frame = -1 Query: 378729 IAESKGSLIFSQTVDSSSQAALLLQRAGIETKAVSSASKPHERRGAMQQFANGFAKVLCA 378550 +A+ K +++++ +V++S + G + A+S + P R AMQ F +G ++ Sbjct: 210 LAKGKQAIVYTHSVEASESVSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDGKLTIMVN 269 Query: 378549 PRILDEGIDVPDSDLAVVLSGSKQPRQTIQRLGRIIRRKDDGRHGRFVVL 378400 + EGID+P+ D+ ++L +P Q++ + R + R G+ ++ Sbjct: 270 CELFTEGIDLPNVDVCIML----RPTQSLSLYLQFAMRALNPREGKTAII 315 Score = 44.7 bits (104), Expect = 0.024 Identities = 17/70 (24%), Positives = 41/70 (58%) Frame = -2 Query: 618227 IMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVATDVAARG 618048 I++ + +A+E ++ +G+ + AI+G P + R+R + R+GK+ I+V ++ G Sbjct: 217 IVYTHSVEASESVSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDGKLTIMVNCELFTEG 276 Query: 618047 LDVERITLVV 618018 +D+ + + + Sbjct: 277 IDLPNVDVCI 286 >ref|NP_818239.1|gp188 Length = 318 Score = 49.3 bits (116), Expect = 0.001 Identities = 41/123 (33%), Positives = 55/123 (44%) Frame = +1 Query: 449812 PVGYLSKVRELTREAGALLVLDEVQSGVARTGSWFAYQNPEIGEGVVPDIITSAKGLGGG 449991 P L +V T+ +G +V DE +G R G + +Q G PD I GGG Sbjct: 122 PEVVLDEVDRATK-SGRTVVADESATGFGRLGRIWGHQ----AYGFTPDAIIFGGPAGGG 176 Query: 449992 MPIGATITVGDANTKLLEAGQHGTTFGGNPIACAAGLAVLETIETENLLAHSRDTGAWLS 450171 + +G I +LL+ G G P+ACA G A L I E LL H R+ G Sbjct: 177 LTLGGVI----GPAELLDDAFVGP-MAGAPLACATGAATLAAINPE-LLEHVREEGVTFG 230 Query: 450172 EQL 450180 E+L Sbjct: 231 ERL 233 Score = 45.4 bits (106), Expect = 0.014 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 23/205 (11%) Frame = -1 Query: 621633 RWAAD---RIGEAIEFEGADSVAAVFLEPVQNSGGC----FP--------PPPGYFERVR 621499 RW + ++ +++E ADS+ ++ E +++G FP G Sbjct: 64 RWPVEYARKLIDSLERPDADSLRVLYAEGGRDAGAVAFTQFPNWSLVSLIDREGRLVAPE 123 Query: 621498 EICDEYDVL------LVSDETICAYGRIGDMFACNDFGYVPDIITSAKGITSGYAPLGAM 621337 + DE D +V+DE+ +GR+G ++ +G+ PD I G G LG + Sbjct: 124 VVLDEVDRATKSGRTVVADESATGFGRLGRIWGHQAYGFTPDAIIFG-GPAGGGLTLGGV 182 Query: 621336 IASDRLFEPFGPGGDETFYHGYTFGGHPVSCAAAMANFDVFEKEKLNDHVHENAAAFKFT 621157 I L + G G P++CA A E L +HV E F Sbjct: 183 IGPAELLDDAFVG---------PMAGAPLACATGAATLAAINPELL-EHVREEGVTFGER 232 Query: 621156 LEKLKDL--PIVGDVRGEGFFYGIE 621088 L L D + D G G ++ ++ Sbjct: 233 LRALVDRFGDYLADTAGSGLYHTLD 257 >ref|NP_996715.1|putative tape measure protein Length = 843 Score = 49.3 bits (116), Expect = 0.001 Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 3/195 (1%) Frame = -1 Query: 56454 VKDTSVAIWNGF---ISWIVGLWNGIIGTAKAVFLGIGTAIITAWNWIKTKTSDVWNAII 56284 +K + WNG IS +V GII TAKA+F G+G+A A+ Sbjct: 550 LKGLITSAWNGIKSIISSVVSGIGGIINTAKAIFTGLGSA---------------GGALR 594 Query: 56283 NWIKDTWNKIITTISDAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQG 56104 + I W+ I + IS + I NGIK S ++ G Sbjct: 595 SVISGAWSGIRSIISSVGGSISGTI---------------NGIK--------SFFSSLGG 631 Query: 56103 KVQQIKNWITNTWNRVKNTTSNAWSGIKSAVRNGINGAVNFVRRLPGRALSALGNIGSKL 55924 +++ ++ W+ + S A S I S + NGI G N +R + L Sbjct: 632 SGNGLRSVMSGVWSGITGIISGASSTI-SGIINGIKGIFNSLRNI-------------DL 677 Query: 55923 YNSGKAMIDGFKDGI 55879 +G+A+IDGF G+ Sbjct: 678 AGAGRAIIDGFVGGL 692 Score = 47.4 bits (111), Expect = 0.004 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 9/168 (5%) Frame = -1 Query: 56202 AWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKVQQIKNWITNTWNRVKNTTSNAWSGI 56023 A T +K + WNGIK +I ++VS + + + I + + +++ S AWSGI Sbjct: 546 AGTSLKGLITSAWNGIK-SIISSVVSGIGGIINTAKAIFTGLGSAGGALRSVISGAWSGI 604 Query: 56022 K---SAVRNGINGAVNFVRRLPGRALSALGNIGSKLYNSGKAM---IDGFKDGIXXXXXX 55861 + S+V I+G +N ++ S+LG G+ L + + I G G Sbjct: 605 RSIISSVGGSISGTINGIKSF----FSSLGGSGNGLRSVMSGVWSGITGIISGASSTISG 660 Query: 55860 XXXXVKDGLSRIRNFFPFSPAK---EGPFSGKGWTWYSGQSMSEGLAD 55726 +K + +RN + +G G TW +G+ G+AD Sbjct: 661 IINGIKGIFNSLRNIDLAGAGRAIIDGFVGGLKSTWEAGKKFVGGIAD 708 >ref|NP_038334.1|ORF33 Length = 1554 Score = 48.9 bits (115), Expect = 0.001 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 5/137 (3%) Frame = -1 Query: 56331 WNWIKTKTSDVWNAIINWIKDTWNKIITTISDAVNK----VKNWISDAWTMIKTMTAKLW 56164 W+ IK S W I K++ N + D N KNW SD W K +K W Sbjct: 808 WDGIKGFASKTWEGIH---KNSTNAMTVLGKDINNHHKDISKNW-SDGWENSKAFLSKKW 863 Query: 56163 NGIKMAIARAIVSAVRT-VQGKVQQIKNWITNTWNRVKNTTSNAWSGIKSAVRNGINGAV 55987 + I + V+T V + I +TW +KN + W+ +K+ R+GIN + Sbjct: 864 DEINKDAEQKFGGNVKTLVIDNLVNIGQKFKDTWEGIKNGFQDMWNNLKNLARDGINAVI 923 Query: 55986 NFVRRLPGRALSALGNI 55936 +P + + + + Sbjct: 924 G----IPNKGIDGINGL 936 >ref|NP_075464.1|integrase Length = 401 Score = 48.9 bits (115), Expect = 0.001 Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 21/183 (11%) Frame = +3 Query: 488262 QIRAAALLELLYATGARISEAVGVDLDDLDLETSLVRLYGK----------GGKERIVPF 488411 +I A++LE+ TG RI E + D+DL + + G G K+ Sbjct: 213 RILIASILEVQALTGMRIGELQALQEKDIDLLNKTINITGTIHRIKYEEGFGYKDTTKTI 272 Query: 488412 GSHAATALGAWVSRT----------RPXXXXXXXXXXXXXXLFLNARGTRLSRQTAWQIV 488561 S + ++ SRT +F +G L ++ Sbjct: 273 SSKRSISIN---SRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVL 329 Query: 488562 KDAGELAGLEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHA-SVTTTQIYTKVSEETL 488738 K + + +V+ HTFRH+ T L+E ++ + + +GH TT +IYT V+E+ Sbjct: 330 KKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMD 389 Query: 488739 REV 488747 RE+ Sbjct: 390 REL 392 Score = 47.0 bits (110), Expect = 0.005 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%) Frame = +1 Query: 66694 LLDVVDLMLGTGMRIGEVLALRWSDVDLGEHPRLTVSGTLVPIK-EKGLRRQAHTKTASG 66870 + ++++ TGMRIGE+ AL+ D+DL + + ++GT+ IK E+G + TKT S Sbjct: 216 IASILEVQALTGMRIGELQALQEKDIDL-LNKTINITGTIHRIKYEEGFGYKDTTKTISS 274 Query: 66871 FRVLTLPAFVVEVLLRRSVE--------SIPTETNAVFPSGAGTWKWPNNYRRALRAALK 67026 R +++ + VE+ + +E S + +F + G N L+ K Sbjct: 275 KRSISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTK 334 Query: 67027 EMENTSGITPHVFR 67068 + +T H FR Sbjct: 335 ALNMNKKVTTHTFR 348 >ref|NP_803307.1|integrase Length = 401 Score = 48.9 bits (115), Expect = 0.001 Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 21/183 (11%) Frame = +3 Query: 488262 QIRAAALLELLYATGARISEAVGVDLDDLDLETSLVRLYGK----------GGKERIVPF 488411 +I A++LE+ TG RI E + D+DL + + G G K+ Sbjct: 213 RILIASILEVQALTGMRIGELQALQEKDIDLLNKTINITGTIHRIKYEKGFGYKDTTKTI 272 Query: 488412 GSHAATALGAWVSRT----------RPXXXXXXXXXXXXXXLFLNARGTRLSRQTAWQIV 488561 S + ++ SRT +F +G L ++ Sbjct: 273 SSKRSISIN---SRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVL 329 Query: 488562 KDAGELAGLEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHA-SVTTTQIYTKVSEETL 488738 K + + +V+ HTFRH+ T L+E ++ + + +GH TT +IYT V+E+ Sbjct: 330 KKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMD 389 Query: 488739 REV 488747 RE+ Sbjct: 390 REL 392 Score = 48.5 bits (114), Expect = 0.002 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 9/134 (6%) Frame = +1 Query: 66694 LLDVVDLMLGTGMRIGEVLALRWSDVDLGEHPRLTVSGTLVPIK-EKGLRRQAHTKTASG 66870 + ++++ TGMRIGE+ AL+ D+DL + + ++GT+ IK EKG + TKT S Sbjct: 216 IASILEVQALTGMRIGELQALQEKDIDL-LNKTINITGTIHRIKYEKGFGYKDTTKTISS 274 Query: 66871 FRVLTLPAFVVEVLLRRSVE--------SIPTETNAVFPSGAGTWKWPNNYRRALRAALK 67026 R +++ + VE+ + +E S + +F + G N L+ K Sbjct: 275 KRSISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTK 334 Query: 67027 EMENTSGITPHVFR 67068 + +T H FR Sbjct: 335 ALNMNKKVTTHTFR 348 >ref|NP_058467.1|integrase Length = 401 Score = 48.9 bits (115), Expect = 0.001 Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 21/183 (11%) Frame = +3 Query: 488262 QIRAAALLELLYATGARISEAVGVDLDDLDLETSLVRLYGK----------GGKERIVPF 488411 +I A++LE+ TG RI E + D+DL + + G G K+ Sbjct: 213 RILIASILEVQALTGMRIGELQALQEKDIDLLNKTINITGTIHRIKYEEGFGYKDTTKTI 272 Query: 488412 GSHAATALGAWVSRT----------RPXXXXXXXXXXXXXXLFLNARGTRLSRQTAWQIV 488561 S + ++ SRT +F +G L ++ Sbjct: 273 SSKRSISIN---SRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVL 329 Query: 488562 KDAGELAGLEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHA-SVTTTQIYTKVSEETL 488738 K + + +V+ HTFRH+ T L+E ++ + + +GH TT +IYT V+E+ Sbjct: 330 KKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMD 389 Query: 488739 REV 488747 RE+ Sbjct: 390 REL 392 Score = 47.0 bits (110), Expect = 0.005 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%) Frame = +1 Query: 66694 LLDVVDLMLGTGMRIGEVLALRWSDVDLGEHPRLTVSGTLVPIK-EKGLRRQAHTKTASG 66870 + ++++ TGMRIGE+ AL+ D+DL + + ++GT+ IK E+G + TKT S Sbjct: 216 IASILEVQALTGMRIGELQALQEKDIDL-LNKTINITGTIHRIKYEEGFGYKDTTKTISS 274 Query: 66871 FRVLTLPAFVVEVLLRRSVE--------SIPTETNAVFPSGAGTWKWPNNYRRALRAALK 67026 R +++ + VE+ + +E S + +F + G N L+ K Sbjct: 275 KRSISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTK 334 Query: 67027 EMENTSGITPHVFR 67068 + +T H FR Sbjct: 335 ALNMNKKVTTHTFR 348 >ref|NP_695070.1|putative tape-measure protein Length = 657 Score = 48.9 bits (115), Expect = 0.001 Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 18/210 (8%) Frame = -1 Query: 56454 VKDTSVAIWNGF---ISWIVGLWNGIIGTAKAVFLGIGTAIITAWNWIKTKTSDVWNAII 56284 +K + WNG IS +V GII TAKA+F G+G +A +++ S W+ I Sbjct: 364 LKGLITSAWNGIKSIISSVVSGIGGIINTAKAIFTGLG----SAGGALRSMISGAWSGIR 419 Query: 56283 NWIKDTWNKIITTISDAVNKVKNWISD---AWTMIKTMTAKLWNGIKMAIARAIVSAVRT 56113 + I + + +IS +N +K++ S + ++++ + +W+GI I+ A T Sbjct: 420 SII----SSVGGSISGTINGIKSFFSSLGGSGNGLRSVMSGVWSGITGIIS----GASST 471 Query: 56112 VQGKVQQIKNWITNTWNRVKN---------TTSNAWSGIKSAVRNG---INGAVNFVRRL 55969 + G + IK N +N +KN G+KS G + G ++++ Sbjct: 472 ISGIIDGIK----NIFNSLKNIDLAGAGRAVIDGFVGGLKSTWEAGKKFVGGIADWIKDH 527 Query: 55968 PGRALSALGNIGSKLYNSGKAMIDGFKDGI 55879 G + L +G+A++ GF D + Sbjct: 528 KG----PISYDRKILIPAGQAIMGGFNDSL 553 Score = 47.4 bits (111), Expect = 0.004 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 13/172 (7%) Frame = -1 Query: 56202 AWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKVQQIKNWITNTWNRVKNTTSNAWSGI 56023 A T +K + WNGIK +I ++VS + + + I + + +++ S AWSGI Sbjct: 360 AGTSLKGLITSAWNGIK-SIISSVVSGIGGIINTAKAIFTGLGSAGGALRSMISGAWSGI 418 Query: 56022 K---SAVRNGINGAVNFVRRLPGRALSALGNIGSKLYNSGKAMIDGFKDGIXXXXXXXXX 55852 + S+V I+G +N ++ S+LG G+ L ++++ G GI Sbjct: 419 RSIISSVGGSISGTINGIKSF----FSSLGGSGNGL----RSVMSGVWSGITGIISGASS 470 Query: 55851 XVKDGLSRIRNFF----------PFSPAKEGPFSGKGWTWYSGQSMSEGLAD 55726 + + I+N F +G G TW +G+ G+AD Sbjct: 471 TISGIIDGIKNIFNSLKNIDLAGAGRAVIDGFVGGLKSTWEAGKKFVGGIAD 522 >ref|NP_570363.1|unknown Length = 235 Score = 48.5 bits (114), Expect = 0.002 Identities = 53/210 (25%), Positives = 98/210 (46%), Gaps = 8/210 (3%) Frame = +3 Query: 156738 SPDAEDLLEFSGRMCYRSWEPGLNPNVSRVRTDSAQYLGNVIASQHGSVLEHANFTFVLH 156917 +PDAE+L+ + R+ + + G +P +R YL I H S E A+ + Sbjct: 35 TPDAEELIAYLARVSNKDAKLG-DPADRLIR-----YL---IKHGHWSPFEMAHMVVEIE 85 Query: 156918 NVSRVLTHELIRHRAGSAFSQESLRYVRLADI-PFWFPEWAREDSELMERSLKVL--DTL 157088 +R + +++RHR+ S F + S RY +AD+ F PE R+D++ + S+ L + + Sbjct: 86 T-TRAIAPQILRHRSFS-FQEFSQRYA-VADLGEFEVPELRRQDTKNRQNSIDDLPAEIV 142 Query: 157089 EEHQKWMTEHFELDEASTKFSHKKHMT-----SFMRRFAPEGLATGIVYTANLRSLRHVI 157253 E Q + E FE +T+ +++ ++ R P T + + +RS H Sbjct: 143 AEFQSEIDEVFE----TTRVLYQRMLSYGVAKECARGILPLNTPTKLYMSGTIRSWIHYC 198 Query: 157254 EMRTAKGAEEEIRLVFNKIGEAMREEAPAI 157343 ++R G +EE RL+ + + P + Sbjct: 199 QLRCGNGTQEEHRLIAEECKNLLYANLPNV 228 >ref|NP_835660.1|similar to thymidine kinase Length = 230 Score = 48.5 bits (114), Expect = 0.002 Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 9/204 (4%) Frame = -3 Query: 1256476 GAMNSGKSTALLQAAFNYEERGQRVLLAKPHIDTKGAGEIVSRLGVTREVDFLIPAGSDV 1256297 GAM SGK+ L++ N+++ L+ KP + + SR G T + + Sbjct: 41 GAMASGKTHFLIKLLENFDD----YLVFKPGSIYGYSPTLKSRSGFTHSCVYNLTDFIQN 96 Query: 1256296 ETIYREHADYVDHDALLESIDTPKASVACLLIDEAQFLEPLQVDSLMRIATAISVPVMCY 1256117 T Y A+Y+ + T + S+ + +DE QF P +++ + + + V+ Sbjct: 97 PTFYE--AEYLQ-------LKTGRCSL--IAVDEFQFATPEEIEFIF----SWKIEVVLS 141 Query: 1256116 GIRTDFRTRAFPGSARLLEIAHTLE-ELKTICRCGRKAMFNGRLVDGQFIFDG------- 1255961 G+RTD+ R FP ++ E + ++ + + C CG +N R V+G G Sbjct: 142 GLRTDYLGREFPVWKQIEEKYNPIKINISSRCECGNPTQYNIRFVNGSVDLRGMGYLNPL 201 Query: 1255960 -DQVAIDGNAVTYESLCPRCYLQY 1255892 D I Y+ +C C+ ++ Sbjct: 202 EDPYLIVPEVSHYKPVCKSCFERF 225 >ref|NP_932529.1|RNA-DNA and DNA-DNA helicase ATPase Length = 493 Score = 48.5 bits (114), Expect = 0.002 Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 8/207 (3%) Frame = -1 Query: 379572 SSEVNPHLWTWQAEALDAWHQSEC--RGVVEAVTGAGKTMI-GITAAFEAFRQGIKVLVL 379402 S+ + PH W DA ++ C R ++ T AGK++I + + + KVLV+ Sbjct: 108 STRITPH---WYQS--DAVYEGICARRKILNLPTSAGKSLIQALLSLWYLENYKGKVLVI 162 Query: 379401 VPTAELQSQWQRRLME--TLP-QADVGTLGNGRRDSLGACDILVAIINSATRAELLKEHS 379231 VPT L +Q ++ P +A +G +DS I V+ +A + + + Sbjct: 163 VPTTSLVTQMIDDFVDYRLFPREAMLGIKSGTAKDSNAV--IYVSTWQTAVKQKREWFNQ 220 Query: 379230 DGLLIADECHRYAAKSFSKALRS--DFRYRLGLTATYQRPDKANTAVLDPYFGGVVFQMW 379057 G ++ DECH S K + S ++ GL+ + R KAN FG + + Sbjct: 221 FGCVMNDECHLSTGTSIKKIIESVDHIPFKYGLSGSL-RDGKANILQYVGMFGDIFRPVT 279 Query: 379056 YERALRDGVIAEFDIAFVGIGLTDSER 378976 ++ + +G + + +I V +G +D +R Sbjct: 280 TKQLMDEGQVTDLNIKVVQLGYSDEDR 306 >ref|NP_051006.1|P45 Length = 993 Score = 48.5 bits (114), Expect = 0.002 Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 37/199 (18%) Frame = +1 Query: 754855 PFLQHLLAYR--DSTKLKQTVVGLLKTVAEDGRIHTTYQQTVAA-TGRLS---------- 754995 P L+ LL+ R T LLK+V+ DGR+ T Q A+ TGR + Sbjct: 276 PALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLP 335 Query: 754996 --SLDPN-LQNIPVRTESG--------------RRIREIFIADPHVDDARLLTADYSQIE 755124 +LDPN + N ++G +R IA P +L+ +D S IE Sbjct: 336 RPTLDPNTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPP---GKKLVISDLSNIE 392 Query: 755125 MRIMAHLSGDAALIQAFKD-----GEDLHSYVGSKVFGVGIDEVDSAMRSKVKAMSYGLV 755289 R++A L+G+ + AF + G+DL+ ++ F + ++V R K M GL Sbjct: 393 GRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIGKVMELGLG 452 Query: 755290 Y--GLSAYGLSRQLAIGVD 755340 Y G++A+ L+ LA G+D Sbjct: 453 YGGGVAAF-LTFALAYGLD 470 >ref|NP_150133.1|integrase Length = 375 Score = 48.1 bits (113), Expect = 0.002 Identities = 70/344 (20%), Positives = 143/344 (41%), Gaps = 24/344 (6%) Frame = +1 Query: 66115 EVAEGKHRARARFRD-FTGKTRQVEA-YGASGAKAERQLLANLRSRVESAGDT-----IS 66273 E++ GK++ R++D +T K ++V +A Q L+ ++ T I+ Sbjct: 5 ELSNGKYKFFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKINKKLSTKQVESIT 64 Query: 66274 GNTTVSSLGKIWTGNLGKSDEHTEQTIERY--ESIVEKIIGPALGEYLIMEATVSRVD-- 66441 + K W + +S +H +++++ E I I L + EA ++ Sbjct: 65 FEEIYNLFYKSWAQTVKESTKHNCKSVDKKMKEVIPSDTILANLDRRFLQEAIEKIIESN 124 Query: 66442 GFLRALADKTPGRAKTTKSVLKSMFDLAVRHDALRTNPVREVRLPTK-------RKKPVQ 66600 G++ A K + L+ +F+ AV++ + N V +P K KK Sbjct: 125 GYITA---------KKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRNN 175 Query: 66601 ALTIDEVGTLREGLRKWQAADGVKGPTRSTELLDVVDLMLGTGMRIGEVLALRWSDVDLG 66780 LT+ E+ L + L + + + D+V ++ TGMR GE+ AL+ ++D Sbjct: 176 FLTMQEIKALVDVLNRREYHQ---------KYADMVLVLTLTGMRYGELTALQLKNIDF- 225 Query: 66781 EHPRLTVSGTLVPIKEKGLRRQAHTKTASGFRVLTLPAFVVEVLLRRSV---ESIPTETN 66951 E ++ ++G + + + KT + R + + V+E + R+ V E ++ Sbjct: 226 ETNKIEITGNFDSVN----KIKTLPKTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSS 281 Query: 66952 AVFPSGAGTWKWPNN---YRRALRAALKEMENTSGITPHVFRKS 67074 + W P + + L+ K+ + ++ H+FR S Sbjct: 282 DDYIFCFEKWNQPTTIACFIQILKKYGKQAKIEKNLSSHIFRHS 325 Score = 47.8 bits (112), Expect = 0.003 Identities = 42/187 (22%), Positives = 85/187 (45%), Gaps = 11/187 (5%) Frame = +3 Query: 488205 LSLDDIEAMLATTGGEEPAQIRAAALLELLYATGARISEAVGVDLDDLDLETSLVRLYGK 488384 L++ +I+A++ E Q + A ++ +L TG R E + L ++D ET+ + + G Sbjct: 177 LTMQEIKALVDVLNRREYHQ-KYADMVLVLTLTGMRYGELTALQLKNIDFETNKIEITGN 235 Query: 488385 G---GKERIVPFGSHAATALGAW------VSRTRPXXXXXXXXXXXXXXLFLNARGTRLS 488537 K + +P +++ + + R +F + + + Sbjct: 236 FDSVNKIKTLPKTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPT 295 Query: 488538 RQTAW-QIVKDAGELAGLEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHASV-TTTQI 488711 + QI+K G+ A +E +S H FRHS + L E G I+ + + +GH++ T +I Sbjct: 296 TIACFIQILKKYGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEI 355 Query: 488712 YTKVSEE 488732 Y+ +E+ Sbjct: 356 YSHTTED 362 Score = 43.9 bits (102), Expect = 0.041 Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 16/230 (6%) Frame = +3 Query: 222012 VKSFFAYCVNQHGLSNNPAARLRTPKKDSRLPTVLKPQQAADLVSRQRTVHTEADNSDPI 222191 ++ F Y V + NN P+K L + K + + ++ Q + D + Sbjct: 136 LRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRN--NFLTMQE-IKALVDVLNRR 192 Query: 222192 EATKWVRDAAILEMLYATAVRVSELTGLNRGDVDHQRSMITVLGK-------------GN 222332 E + D ++ L T +R ELT L ++D + + I + G N Sbjct: 193 EYHQKYADMVLV--LTLTGMRYGELTALQLKNIDFETNKIEITGNFDSVNKIKTLPKTTN 250 Query: 222333 KERRVPYGKPAQTALQKWL-SLRDTFASESSGDALFLGVRGGR-IGARQVRELVHRYGAA 222506 R + + A+Q+ + L + F SS D +F + + +++ +YG Sbjct: 251 SIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQILKKYGKQ 310 Query: 222507 DPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGHSTMSST-QIYTHVS 222653 ++ H RHS + + + G ++ I + +GHS T +IY+H + Sbjct: 311 AKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTT 360 >ref|NP_599056.1|bactoprenol glucosyltransferase Length = 307 Score = 48.1 bits (113), Expect = 0.002 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Frame = -2 Query: 1740593 VDLVVPVYNEEASLATSVATLLRATSEGDSHVTIIIADNASTDATPTIAEALAEKHPDVR 1740414 + LVVPV+NEE ++ T+ V I+ ++ S DAT +I ALA P V Sbjct: 3 ISLVVPVFNEEEAIPVFYKTVREFQELKPYEVEIVFINDGSKDATESIINALAVSDPLVV 62 Query: 1740413 YVRLEQK-GRGRALSKVWSASDADVVAYTDVDLATDIRALDPMVEVIRSGIAGIADVAIA 1740237 + + G+ AL + D V DVDL I + ++E ++G AD+ +A Sbjct: 63 PLSFTRNFGKEPALFAGLDHASGDAVIPIDVDLQDPIEVIPHLIEKWQAG----ADMVLA 118 Query: 1740236 SR 1740231 R Sbjct: 119 KR 120 Score = 47.4 bits (111), Expect = 0.004 Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 6/178 (3%) Frame = +1 Query: 869890 KTLVVIPTYNERLALPVTLSGLFENQP----DVDVLVVDDGSPDGTGEWVDEQARTDPRL 870057 K +V+P +NE A+PV + E Q +V+++ ++DGS D T ++ A +DP + Sbjct: 2 KISLVVPVFNEEEAIPVFYKTVREFQELKPYEVEIVFINDGSKDATESIINALAVSDPLV 61 Query: 870058 HVLHRSEKSGLGMAYIAGFEWALERDYEIICEFDADGSHRPLDLGQLLAVAQAGHADLVI 870237 L + G A AG + A + + D D + L+ QAG AD+V+ Sbjct: 62 VPLSFTRNFGKEPALFAGLDHA---SGDAVIPIDVDLQDPIEVIPHLIEKWQAG-ADMVL 117 Query: 870238 GSRWVRG--GAIVDWPRSRFFLSRGANIYVNAVMGLGVKDATAGFRAYSREVLQNLDL 870405 R R G + F+ N + +++ FR SREV++N+ L Sbjct: 118 AKRSDRSTDGRLKRKTAEWFYKLH------NKISTPKIEENVGDFRLMSREVVENIKL 169 >ref|NP_061549.1|Orf53 Length = 354 Score = 48.1 bits (113), Expect = 0.002 Identities = 72/313 (23%), Positives = 132/313 (42%), Gaps = 25/313 (7%) Frame = -3 Query: 1581328 LKDVRIMIDG-VADITVRPGASPVELDKALTSAKGAFEAELERLDIDSVSQARDNANVRA 1581152 L +R IDG V D+T R G V A A++ + +D++ + + A Sbjct: 30 LAKIREEIDGFVPDVTTRKGREAV--------ASIAYKVARSKTALDNLGK-----ELVA 76 Query: 1581151 DAEAVMAEADSTLKVLLGQDKRDKLEAALARAQQILGADGTSASTDDKAGNGAEVDG--- 1580981 + + V + D+ K + RD L++ A +Q L D KA + A +D Sbjct: 77 ELKEVPKKVDAERKRM-----RDLLDSWQAEVRQPL-TDWEQREEMRKAKHQAGIDQIKM 130 Query: 1580980 --QTRDRSLSELETAVA--------------ESEATVDDAQSAVDSTRIELERTRTSRDD 1580849 + RD +EL+ + E+EA ++ + R + + Sbjct: 131 RLECRDLDSTELKANIEWLEGLLIGEDWEEFETEAARTKGKALAALREALVAREKYEAEQ 190 Query: 1580848 ARVETVRAQTSLKEAETQHERLTSSLAEARKTNSDADLDEEVTS-----AEARATNVGSQ 1580684 A +E +RA+ + +E + + ER+ AEA + ++ EE + AEA+A + Sbjct: 191 AELERLRAEAAAREQKEREERIAREAAEAERLAAERRAQEERDATARREAEAKAAAERRE 250 Query: 1580683 VDEARVAYEAADPETLEMQLQNVRQLVGSKEAQREEVRQDVDRLSALIDDRASEGIYEKL 1580504 + E R+A E A+ E LE Q + +++A+R+ R+ + +A +A E + Sbjct: 251 L-ELRLAAEKAEREKLEAQQR-------AEQAERDAQRRAEEATAAERQRQADEQARIER 302 Query: 1580503 AAAEETMESARRK 1580465 AA + A +K Sbjct: 303 EAAARESDKAHKK 315 >ref|NP_818206.1|gp133 Length = 948 Score = 48.1 bits (113), Expect = 0.002 Identities = 25/62 (40%), Positives = 33/62 (53%) Frame = -3 Query: 1425412 AKAHLGVKYVWGGTSPTKGWDCSGYTQYVYGKHGIKLPRTTSQQRNAGTVIPASEAKAGD 1425233 A+A +G YVWG T P +DCSG Y GI++ RTT + T IP + GD Sbjct: 519 ARAQIGRPYVWGATGPAS-YDCSGLMLAAYRSIGIEIGRTTYDEVATCTTIPPTNLVPGD 577 Query: 1425232 MI 1425227 +I Sbjct: 578 LI 579 >ref|NP_818164.1|gp91 Length = 235 Score = 48.1 bits (113), Expect = 0.002 Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 20/194 (10%) Frame = +3 Query: 156834 DSAQY--LGNVIASQHGSVLEHANFTFVLHNVSRVLTHELIRHRAGSAFSQESLRYVRLA 157007 DS +Y + ++ +HG+ EH N TF + + E RHR+G ++++ES RY +L Sbjct: 39 DSERYGLINALMRDRHGTPFEHMNATFRV-TAPIFVWREHHRHRSGWSYNEESGRYKQL- 96 Query: 157008 DIPFWFP---------EWAREDSELMERSLKVLDTLEEHQKWMT--EHFELDEASTKFSH 157154 D F+ P E R ++E+ L + W T + EA Sbjct: 97 DPVFYVPGETRPIAKVEGTRNMDYVLEKGTADQHALIANAMWATCSGAYRQYEAMLDAGI 156 Query: 157155 KKHMTSFMRRFAPEGLATGIVYTANLRSLRHVIEMRTAKG-------AEEEIRLVFNKIG 157313 + + R P + + + T N RSL H + +R + EI LV N Sbjct: 157 VREVA---RMVLPVNIMSTCIVTCNARSLMHFLSLRQRHNDARFPSKPQYEINLVANGYE 213 Query: 157314 EAMREEAPAIFSDY 157355 + EEAP + Y Sbjct: 214 RLLAEEAPLVHRSY 227 >ref|NP_996722.1|lysin Length = 429 Score = 48.1 bits (113), Expect = 0.002 Identities = 34/112 (30%), Positives = 54/112 (48%) Frame = -3 Query: 528637 SGTSGETVPVTHGGRTYKTRDGDTLYGVASKHGVSVPALAELNAISPRQNLHQGQVLSLP 528458 + TS T P ++Y + GDTL G+AS G + LA N++S ++ GQV+SL Sbjct: 321 ASTSQPTTPA----KSYIVKQGDTLSGIASNLGTNWQELARQNSLSNPNMIYSGQVISL- 375 Query: 528457 EKNDLPDTDPSHVVAPGETLAGIAARHQMSPGSLRRANSMGEESFLQVGELL 528302 T ++ V G+ L+ IA R + SL N + + + G+ L Sbjct: 376 TGGQSGATARTYTVQSGDNLSSIARRLGTTVQSLVSMNGISNPNLIYAGQTL 427 >ref|NP_463477.1|putative tape-measure protein Length = 1794 Score = 48.1 bits (113), Expect = 0.002 Identities = 59/266 (22%), Positives = 117/266 (43%), Gaps = 30/266 (11%) Frame = -1 Query: 57624 GRLRSIDSANAQLKGLGYSAKDVENISGQVATALEGGMMTLGEGTRVAAGGLAAGVEQGK 57445 GR+ +ID+A L L SAKD + + + A++G + L A +AAG++ Sbjct: 375 GRVDTIDTATKSLTVLTGSAKDAQLVMTDLTAAIDGTPIALDAVALGAKKMVAAGMQAAN 434 Query: 57444 ELEKYIGLVDAA-AIGMNT-SVDETAMIFNRVQGSGKVMTEEL-QMVEQRMPGF---SNA 57283 + + DAA +G + S+D+ + +Q SG ++++ ++V+ +P + +N+ Sbjct: 435 VKPVFTAIADAAYGVGNGSESIDQMTDAISALQASGVAYSDDINRLVDAGVPAWQILANS 494 Query: 57282 LQEHIGVASDDEFKKMVTAGEVGSDAFL--------ETMDTFAGDMAK----------EH 57157 + +G E KK V+ G + S + E AG+ AK Sbjct: 495 TGKSVG-----EMKKYVSEGSLESTKAIAMLTKGIEEGTTGMAGNTAKMAGLAKTAGNTI 549 Query: 57156 AKSFDGLVDLAKAYVGQIGEAMLGGVFEQ---SKDSIAEFVDWLSDPGVQAKAAELGKTI 56986 + SF + A + I E + G + + +K++ +F + P Q K +++ + I Sbjct: 550 SGSFANMKTAAVKSLANIAENLKGPIIQALDVAKNAFKQFAAVTASPEFQKKLSDMIQKI 609 Query: 56985 GD---VFSKVLGVVKNVITWFMGLPA 56917 + V K+ + V++ + L A Sbjct: 610 KELIPVMVKLAPTILKVVSAMLALQA 635 Score = 40.8 bits (94), Expect = 0.35 Identities = 41/205 (20%), Positives = 90/205 (43%), Gaps = 14/205 (6%) Frame = -1 Query: 56454 VKDTSVAIWNGFISWIVGLWNGIIGTAKAVFLGIGTAIITAWNWIKTKTSDVWNAIINWI 56275 +K+T+V I NGF S + + I+ K + + + +I +A IK+ S + +A+++ + Sbjct: 123 IKNTAVNIKNGFFSIAKTVQSSIMSAVK-ISINVIKSIPSA---IKSAGSSIKSALVSSL 178 Query: 56274 KDTWNKIITTISDAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQGKVQ 56095 + I+ V +K+ A KT + N +A +V+A +V+G + Sbjct: 179 QAAKMAAISFAQTTVKVIKSIPGAA----KTAATAVKNSFVVAYKAVVVAAYMSVKGTIS 234 Query: 56094 QIK--------------NWITNTWNRVKNTTSNAWSGIKSAVRNGINGAVNFVRRLPGRA 55957 +K + + ++ V + + +K+A+ NG + + + Sbjct: 235 AVKAIPSATKSAALAVSSAMKTAFSAVVSAAKTTGTTVKTALTNGFSAIKSGAKTAGQVG 294 Query: 55956 LSALGNIGSKLYNSGKAMIDGFKDG 55882 +SAL +G+ ++G + +G G Sbjct: 295 ISALKGLGNAAKSTGSLIKNGLVSG 319 >ref|NP_049421.1|putative helicase Length = 443 Score = 47.8 bits (112), Expect = 0.003 Identities = 25/110 (22%), Positives = 58/110 (52%) Frame = -1 Query: 378729 IAESKGSLIFSQTVDSSSQAALLLQRAGIETKAVSSASKPHERRGAMQQFANGFAKVLCA 378550 +A+ K +++++ +V++S + ++ G + A+S + P R AMQ F + ++ Sbjct: 210 LAKGKQAIVYTHSVEASESVSNTFKKNGYTSIAISGKTPPEVRERAMQAFRDRELTIMVN 269 Query: 378549 PRILDEGIDVPDSDLAVVLSGSKQPRQTIQRLGRIIRRKDDGRHGRFVVL 378400 + EGID+P+ D+ ++L +P Q++ + R + R G+ ++ Sbjct: 270 CELFTEGIDLPNVDVCIML----RPTQSLSLYLQFAMRALNPREGKTAII 315 Score = 41.6 bits (96), Expect = 0.20 Identities = 16/70 (22%), Positives = 40/70 (57%) Frame = -2 Query: 618227 IMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVATDVAARG 618048 I++ + +A+E ++ + G+ + AI+G P + RER + R+ ++ I+V ++ G Sbjct: 217 IVYTHSVEASESVSNTFKKNGYTSIAISGKTPPEVRERAMQAFRDRELTIMVNCELFTEG 276 Query: 618047 LDVERITLVV 618018 +D+ + + + Sbjct: 277 IDLPNVDVCI 286 >ref|NP_044832.1|hypothetical protein Length = 237 Score = 47.8 bits (112), Expect = 0.003 Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 31/168 (18%) Frame = +1 Query: 1796386 TEKAHARAVFTVLSDKGMSNT--NIAGILGNWSQESGVDPTSVQGIMDSPYKMTPKKREK 1796559 TE++ R V ++ T IAGI+GN+S ES V + + Y+ + E Sbjct: 65 TEESRVRLVTRIIKKLVPDATAEGIAGIIGNFSAESNVTAKKYEADYATGYEYEKMESEP 124 Query: 1796560 -AESFSG---------------------------GLGLGQWTGSRNSKLKAYAKTKSTDW 1796655 AE+ G G+G+GQWTG R +L +A+++ Sbjct: 125 TAENLMGSWGAFASLYSISLNEAGYRGSDGNHWIGIGIGQWTGPRAEELLNFARSQGKSL 184 Query: 1796656 WTIELQMNFM-ADTKGDDAQSVQVFEDMIKNELDSVSAATTHFHDKWE 1796796 W LQ FM +++ D + V + S S + F + WE Sbjct: 185 WDFNLQFQFMNQESRADTFRRV-------ASSTASASTNASDFMNNWE 225 >ref|YP_003955.1|hypothetical protein Length = 59 Score = 47.8 bits (112), Expect = 0.003 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Frame = -3 Query: 1727848 VAKASFDRTKPHVNIGTIGHVDHGKTTLTAAITKVLAD--KYPDLNEARAFDQVDNAPE 1727678 ++K F+RTKP +N+G IGHVDHGKT L A+ + + K+ A + V N P+ Sbjct: 1 MSKEKFERTKPVLNVGIIGHVDHGKTELAKALLRHRENWRKWRQSGNANLINGVRNEPD 59 >ref|NP_818386.1|gp85 Length = 424 Score = 47.4 bits (111), Expect = 0.004 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 8/84 (9%) Frame = +3 Query: 222471 QVRELVHRYGAADPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGHSTMSST-QIYTH 222647 + E+ A P+ P I PH LRH+ A+ + GA+++ +Q LLGH+T T +Y H Sbjct: 340 RAEEIAETGRATTPAFPRITPHDLRHTCASLAISSGANVKAVQNLLGHATAVMTLDLYGH 399 Query: 222648 V-------SMQRLQETYRQAHPRA 222698 + M L E A PR+ Sbjct: 400 LLSDDLDRVMTALNEAAAAASPRS 423 Score = 40.4 bits (93), Expect = 0.45 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Frame = +3 Query: 488598 VSPHTFRHSFATHLLEGGADIRVVQELLGHA-SVTTTQIYTKVSEE-------TLREVYA 488753 ++PH RH+ A+ + GA+++ VQ LLGHA +V T +Y + + L E A Sbjct: 358 ITPHDLRHTCASLAISSGANVKAVQNLLGHATAVMTLDLYGHLLSDDLDRVMTALNEAAA 417 Query: 488754 TSHPRA 488771 + PR+ Sbjct: 418 AASPRS 423 >ref|NP_049403.2|putative tail component protein Length = 1656 Score = 47.0 bits (110), Expect = 0.005 Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 12/149 (8%) Frame = -1 Query: 56397 WNGIIGTAKAVFLGIGTAII-----------TAWNWIKTKTSDVWNAIINWIKDTWNKII 56251 W I AK+ +G+AI W K SD W+ + K++ ++ Sbjct: 875 WENIKDGAKSGMKNLGSAITGKLSDIGKEWKKGWKNSKDYLSDRWDDMKGNTKESIKRLG 934 Query: 56250 TTISDAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQ-GKVQQIKNWIT 56074 ++I D +++ + S W K + W+ + + ++ + + I + Sbjct: 935 SSIKDKHDEIHDRWSKTWNKSKDFLSDRWDDMNADAKKKFGKDLKGLLFSNLDAIGSKFQ 994 Query: 56073 NTWNRVKNTTSNAWSGIKSAVRNGINGAV 55987 + WN ++N S+ W+G+K NGIN + Sbjct: 995 DIWNGIRNGFSDMWNGLKDLAGNGINAVI 1023 Score = 43.5 bits (101), Expect = 0.053 Identities = 44/199 (22%), Positives = 78/199 (39%), Gaps = 4/199 (2%) Frame = -1 Query: 56463 WNWVKDTSVAIWNGFISWIVGLWNGIIGTAKAVFLGIGTAIITAWNWIKTKTSDVWNAII 56284 W +KD + + S I G + I K + + W+ +K T + + Sbjct: 875 WENIKDGAKSGMKNLGSAITGKLSDIGKEWKKGWKNSKDYLSDRWDDMKGNTKESIKRLG 934 Query: 56283 NWIKDTWNKIITTISDAVNKVKNWISDAWTMIKTMTAKLWNGIKMAIARAIVSAVRTVQG 56104 + IKD ++I S NK K+++SD W M A + + S + + Sbjct: 935 SSIKDKHDEIHDRWSKTWNKSKDFLSDRWD---DMNADAKKKFGKDLKGLLFSNLDAIGS 991 Query: 56103 KVQQIKNWITN----TWNRVKNTTSNAWSGIKSAVRNGINGAVNFVRRLPGRALSALGNI 55936 K Q I N I N WN +K+ N + + +GI+G + G +A+G I Sbjct: 992 KFQDIWNGIRNGFSDMWNGLKDLAGNGINAVIKIPNDGIDGINGLIHDF-GGPKNAIGKI 1050 Query: 55935 GSKLYNSGKAMIDGFKDGI 55879 + G + +++ I Sbjct: 1051 PKVKFADGTGLFSSYRNPI 1069 >ref|YP_164758.1|orf123 Length = 599 Score = 47.0 bits (110), Expect = 0.005 Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 1/121 (0%) Frame = -1 Query: 378798 VKRQQVLTNAKNKMKILEGIAPVIAESKGSLIFS-QTVDSSSQAALLLQRAGIETKAVSS 378622 V R ++ N+ I E + + G++ + ++ A L G + + Sbjct: 437 VNRIGIVENSSRNKYIAELATKLSDLNNGAVYIAFNNIEHGENIAEFLDELGTDYVIMQG 496 Query: 378621 ASKPHERRGAMQQFANGFAKVLCAPRILDEGIDVPDSDLAVVLSGSKQPRQTIQRLGRII 378442 ++ ER+ ++ +G +V+ ++LDEG+ VP + +SG + Q QR+GRI+ Sbjct: 497 STSDEERQEILKGLVSGDVRVILGSKVLDEGVSVPTLKYLLYVSGGQSEIQVGQRVGRIL 556 Query: 378441 R 378439 R Sbjct: 557 R 557 >ref|NP_958506.1|putative integrase Length = 391 Score = 47.0 bits (110), Expect = 0.005 Identities = 58/269 (21%), Positives = 109/269 (40%), Gaps = 12/269 (4%) Frame = +1 Query: 66211 AERQLLANLRSRVESAGDTISGNTTVSSLGKIWTGNLGKSDEHTEQTIERYESIVEKIIG 66390 AE + + N S+++ V+ L ++W N + E T + + + + + Sbjct: 47 AEAEAVFNKMSQIKPDNFVKQKQIKVAELRELWFENY--KTQVKESTANKNKQVFDNHVI 104 Query: 66391 PALGEYLIMEATVSRVDGFLRALADKTPGRAKTTKSVLKSMFDLAVRHDALRTNPVREVR 66570 PA G I + TV+ + + A K + + + ++F+ +R + + NP++ + Sbjct: 105 PAFGNQYIDKITVAELQKWADRKA-KQIVKYRDAINEFNALFEYGIRLNYVSENPLKRII 163 Query: 66571 LPTKRKKPVQ-----ALTIDEVGTLREGLRKWQAADGVKGPTRSTELLDVVDLMLGTGMR 66735 +P K +P + T DE+ E + + L+ TG+R Sbjct: 164 IPKKTSRPRRDTEHNVYTQDELNQFLEVAKDYGLVP-----------YTYFKLLSATGLR 212 Query: 66736 IGEVLALRWSDVDLGEHPRLTVSGTLVPIKEKGLRRQAHT-----KTASGFRVLTLPAFV 66900 E LAL WSD++L +GTL K T K+ R+L + + Sbjct: 213 KSEALALTWSDINL-------TAGTLSVNKTLAYGLNGKTIIQPPKSPKSKRILPISDGL 265 Query: 66901 VEVLL--RRSVESIPTETNAVFPSGAGTW 66981 EVL+ +R + I E +F + GT+ Sbjct: 266 KEVLIDYKRKQKIISKE---LFHTNKGTY 291 >ref|NP_853574.1|gp14 Length = 849 Score = 47.0 bits (110), Expect = 0.005 Identities = 54/232 (23%), Positives = 97/232 (41%), Gaps = 12/232 (5%) Frame = +1 Query: 755008 NLQNIPVRTESGRRIREIFIADPHVDDARLLTADYSQIEMRIMAHLSGDAALIQAFKDGE 755187 N+ NIP R +R++FIA +L D + +E+R+++H D + G Sbjct: 542 NVVNIPAR--GLYPLRDLFIAGK---GKMILGCDGAGLELRVLSHFMNDPEYQEIVLHG- 595 Query: 755188 DLHSYVGSKVFGVGIDEVDSAMRSKVKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQY 755367 D+H++ K G+ + D A K Y +YG L+ + DE K ++ ++ Sbjct: 596 DIHTHNQLKA---GLPKRDMA-----KTFIYAFLYGSGIANLAAVCGVTEDEMKEVVARF 647 Query: 755368 FERFGAVKDYLDEIVEQARANGYTETIMGRRRYLPALHSDRRQLR--DMAERAALNAPIQ 755541 ++ + ++ GY + P H R ++ ++ E LN +Q Sbjct: 648 EIELPSLARLRENVIAAGNKFGYLQA--------PDGHWGRIRMSGGELKEHTMLNVLLQ 699 Query: 755542 GSAADIMKIAMLKVS----------DRLGDHKSTVLLQVHDEIIVDVHPEEI 755667 + + MK A++K D LG+ VHDEI ++V EE+ Sbjct: 700 MTGSLCMKYALVKAFAVMRREGVALDNLGNPCGVA--NVHDEIQMEVPEEEV 749 >ref|NP_536396.1|ISBt3 transposase subunit protein Length = 92 Score = 47.0 bits (110), Expect = 0.005 Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Frame = -1 Query: 1806582 VELVIHAQADPETANGAITRVANELGLSKETLRVWVRKHK-DSGKTTPAESVDLEAENRR 1806406 + LV +++ + A+ +A +G + +TL WV++++ D G+ + + E + Sbjct: 1 MRLVREQRSEHPSMWAAVESIAPMIGCTPQTLLDWVKRNEVDRGERDGVSTAERE-RIKA 59 Query: 1806405 LRAELTEAKRANEILRRASAFFA-AELDR 1806322 L E+ E +R NEIL+ ASAFFA AELDR Sbjct: 60 LEREVKELRRTNEILKLASAFFAQAELDR 88 Score = 47.0 bits (110), Expect = 0.005 Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Frame = +3 Query: 1793097 VELVIHAQADPETANGAITRVANELGLSKETLRVWVRKHK-DSGKTTPAESVDLEAENRR 1793273 + LV +++ + A+ +A +G + +TL WV++++ D G+ + + E + Sbjct: 1 MRLVREQRSEHPSMWAAVESIAPMIGCTPQTLLDWVKRNEVDRGERDGVSTAERE-RIKA 59 Query: 1793274 LRAELTEAKRANEILRRASAFFA-AELDR 1793357 L E+ E +R NEIL+ ASAFFA AELDR Sbjct: 60 LEREVKELRRTNEILKLASAFFAQAELDR 88 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 46.2 bits (108), Expect = 0.008 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 4/108 (3%) Frame = -3 Query: 1298332 TGKRIVFLHGLFGRGKNFTSIAKAL-EPDYSSLLVDLPNHGDSEWTEDFSYVDMADSVAA 1298156 TG +VFLHGL K + + L E + + +D NHG S V+ V Sbjct: 21 TGAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTGHTVEDMTRVT- 79 Query: 1298155 MIAEMTAPDDLPVH---LVGHSLGGKVAMVLALRHPELIDRLVVVDIA 1298021 + D+L +H GHS+GG + + +A RHP + V++D A Sbjct: 80 ----LKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDAA 123 Score = 44.7 bits (104), Expect = 0.024 Identities = 59/257 (22%), Positives = 101/257 (39%), Gaps = 21/257 (8%) Frame = -3 Query: 1255759 GSPAIVFGNALGTRVSLWAAVAARLADD-YQIYLSDLPGHTHPRTDDGGDFTVPDLAAGL 1255583 G+P +VF + L + + RLA+ +++ D H + G TV D+ Sbjct: 22 GAP-LVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTGH-TVEDMTRVT 79 Query: 1255582 VTSLAELGVEKFTYCGVSISGGIGLTLALDHPDSLNGLVACSTAA--------------- 1255448 + +L EL + + + G S+ GG+ + +A HP + V AA Sbjct: 80 LKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDAAAGQEHHDNIKVGHYAT 139 Query: 1255447 -KFGTAETWAERIKDVEEDGTRG-QLDDTADRWFAAGFLTEDISSGPAILTDLAMVDDAA 1255274 F A+ E + D+ DG L DT ++ G L + +S Sbjct: 140 LAFRAAKKLGEAVTDIVGDGYEAMHLRDTGEKLSFLGMLRDSVSG-------------LR 186 Query: 1255273 YLACARALTQYDLTGRLEAI---TTPTLFIAGAQDPGSTPEAMTDLSAQVPDSTIVVIPD 1255103 ++ A AL + D T L A+ PT + G D EA +A++ +++ + D Sbjct: 187 FVRAAFALMKADTTPLLHAMYRHGVPTAVLHGLHDQIVPYEAGLS-TAKITNASFYGV-D 244 Query: 1255102 AAHLPMAEHPDIVFDHI 1255052 H M P++ D I Sbjct: 245 GFHSWMLADPELAADLI 261 >ref|NP_817623.1|gp34 Length = 522 Score = 46.2 bits (108), Expect = 0.008 Identities = 91/396 (22%), Positives = 147/396 (37%), Gaps = 70/396 (17%) Frame = -2 Query: 1006988 VVEVYEDNAVSATKKRRAGTRWAEMLEDARAGRFSMVVAVDMDRLLRSTKDLNTLIDL-- 1006815 VV ++D VSAT L G + ++V +DR+ RST+D + Sbjct: 42 VVGSFKDLDVSATVSPFERPDLGPWLSPELEGEWDILVFSKIDRMFRSTRDCVKFAEWAE 101 Query: 1006814 --GLRVVTVDGEIDLSTAD------------------GEFRATMLAALARFEARRKAERQ 1006695 G +V + + L+ D G F A + L RF++R + + Sbjct: 102 AHGKILVFAEDNMTLNYRDKDRSGSLESMMSELFIYIGSFFAQL--ELNRFKSRARDSHR 159 Query: 1006694 IRSNERRRAEGIPTSAW----------KAFGWTRDGELIPEEAEAIQRAFDAFLGEPSLS 1006545 + R A G+P + K +G+ I E+ A + D + S Sbjct: 160 VLRGMDRWASGVPPLGFRIVDHPSGKGKGLDTDPEGKAILEDMAA--KLLDGW------S 211 Query: 1006544 IRRIREDLNAAGHLT-------ARG-----SEFSVDAVRYLLANPLYAGY--IKHYASG- 1006410 RI +DLN LT A+G + ++V+ V L +P G KH G Sbjct: 212 FIRIAQDLNQRKVLTNMDKAKIAKGKPPHPNPWTVNTVIESLTSPRTQGIKMTKHGTRGG 271 Query: 1006409 -----ELYPVQGDTF---PPIVGEQTWRA---AVAKLEDNVRRSARQGNQPKYLLSTIGL 1006263 + +G+ PP TW+ A A+ + N R N + +G Sbjct: 272 SKIGTTVLDAEGNPIRLAPPTFDPATWKQIQEAAARRQGNRRSKTYTANP----MLGVGH 327 Query: 1006262 CGKCGATLVSGTNSRK--------QPTYRCGEH----FHLTRQREPLDAMVTEAVLTRLS 1006119 CG CGA+L RK TYRCG ++ + + D ++ + L + Sbjct: 328 CGACGASLAQQFTHRKLADGTEVTYRTYRCGRTPLNCNGISMRGDEADGLLEQLFLEQYG 387 Query: 1006118 SVDVHDLVMPQEDAGPDREELLTERNALVERVKELS 1006011 S V + V G D E L + A ++R++ S Sbjct: 388 SQPVTEKVFV---PGEDHSEELEQVRATIDRLRRES 420 >ref|NP_511031.1|helicase Length = 418 Score = 46.2 bits (108), Expect = 0.008 Identities = 26/99 (26%), Positives = 50/99 (50%) Frame = -1 Query: 378729 IAESKGSLIFSQTVDSSSQAALLLQRAGIETKAVSSASKPHERRGAMQQFANGFAKVLCA 378550 +A+ + +++++ ++ S + A AGI + + + R ++QF G KVLC Sbjct: 189 LADGEQAILYASSIYQSEKMAASFNAAGISSAHIDGKTPKPIRDDIIKQFREGELKVLCN 248 Query: 378549 PRILDEGIDVPDSDLAVVLSGSKQPRQTIQRLGRIIRRK 378433 ++ EG DVPD ++L ++ IQ+ R +R K Sbjct: 249 LDLIGEGFDVPDCSTVIMLRPTQSLSLYIQQSMRGMRYK 287 Score = 42.7 bits (99), Expect = 0.091 Identities = 25/104 (24%), Positives = 47/104 (45%) Frame = +1 Query: 1217233 RTIIFTRTKRTADKLAAELGDRGFQVKPLHGDLGQAQREKALKSFREGQVDVLVATDVAA 1217412 + I++ + ++K+AA G + G + R+ +K FREG++ VL D+ Sbjct: 194 QAILYASSIYQSEKMAASFNAAGISSAHIDGKTPKPIRDDIIKQFREGELKVLCNLDLIG 253 Query: 1217413 RGIDIDDVTHVVNYQCPDDEKTYVHRIGRTGRAGNTGIAVTLVD 1217544 G D+ D + V+ + Y+ + R G G T++D Sbjct: 254 EGFDVPDCSTVIMLRPTQSLSLYIQQSMR-GMRYKQGKTATIID 296 >ref|NP_690702.1|amidase Length = 271 Score = 46.2 bits (108), Expect = 0.008 Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 3/184 (1%) Frame = -3 Query: 571444 GRGGTKACNTTGTSTNSDFPETDFNWGVAQKLEKDLEDAGAKVVMSRDDNDGVGPCVDE- 571268 G GG +G + N E D + +K++ L V D+D +D Sbjct: 10 GHGG----KDSGAAANG-IKEKDIVLKIVKKVKSILTSRYEVAVKLTRDSDVFYELIDRA 64 Query: 571267 RGTFADDADLMVSIHANGSESSTTKGFHVIA-AEPGSSDTVEDDSNRLADAMSKAFSGPF 571091 R A ADL VS+H N + KGF + +S + L DA+ K Sbjct: 65 RKANAAKADLFVSVHINATPGG--KGFETYRYVKTSASSSTGQQQKVLHDAIYKRIK--- 119 Query: 571090 TPNSAYG-KDAISRRPDLAGLNNASVPAVIVECGEMRNPDEAKSMESKSGQQKYADALMD 570914 YG KD + DL+ L N S+PAV+ E + N DEA ++ S A+ + Sbjct: 120 ----KYGIKDRGEKAADLSVLRNTSMPAVLTENLFIDNKDEAALLKKDSFLNDVAEGHAE 175 Query: 570913 GIVD 570902 GI + Sbjct: 176 GIAE 179 >ref|NP_720276.1|GtrB Length = 325 Score = 45.8 bits (107), Expect = 0.011 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Frame = -2 Query: 1740593 VDLVVPVYNEEASLATSVATLLRATSEGDSHVTIIIADNASTDATPTIAEALAEKHPDVR 1740414 + LVVPV+NEE ++ T+ + + I+ ++ S DAT +I +A P V Sbjct: 18 ISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPLVI 77 Query: 1740413 YVRLEQK-GRGRALSKVWSASDADVVAYTDVDLATDIRALDPMVEVIRSGIAGIADVAIA 1740237 + + G+ AL + D V DVDL I + ++E ++G AD+ +A Sbjct: 78 PLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAG----ADMVLA 133 Query: 1740236 SR 1740231 R Sbjct: 134 KR 135 Score = 42.4 bits (98), Expect = 0.12 Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 6/176 (3%) Frame = +1 Query: 869890 KTLVVIPTYNERLALPVTLSGLFE----NQPDVDVLVVDDGSPDGTGEWVDEQARTDPRL 870057 K +V+P +NE +P+ + E + +++++ ++DGS D T +++ A +DP + Sbjct: 17 KISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPLV 76 Query: 870058 HVLHRSEKSGLGMAYIAGFEWALERDYEIICEFDADGSHRPLDLGQLLAVAQAGHADLVI 870237 L + G A AG + A + + D D + L+ QAG AD+V+ Sbjct: 77 IPLSFTRNFGKEPALFAGLDHATG---DAVIPIDVDLQDPIEVIPHLIEKWQAG-ADMVL 132 Query: 870238 GSRWVRG--GAIVDWPRSRFFLSRGANIYVNAVMGLGVKDATAGFRAYSREVLQNL 870399 R R G + F+ N + +++ FR SR V++N+ Sbjct: 133 AKRSDRSTDGRLKRKTAEWFYKLH------NKISNPKIEENVGDFRLMSRAVVENI 182 >ref|YP_006358.1|GtrB Length = 310 Score = 45.8 bits (107), Expect = 0.011 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Frame = -2 Query: 1740593 VDLVVPVYNEEASLATSVATLLRATSEGDSHVTIIIADNASTDATPTIAEALAEKHPDVR 1740414 + LVVPV+NEE ++ T+ + + I+ ++ S DAT +I +A P V Sbjct: 3 ISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPLVI 62 Query: 1740413 YVRLEQK-GRGRALSKVWSASDADVVAYTDVDLATDIRALDPMVEVIRSGIAGIADVAIA 1740237 + + G+ AL + D V DVDL I + ++E ++G AD+ +A Sbjct: 63 PLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAG----ADMVLA 118 Query: 1740236 SR 1740231 R Sbjct: 119 KR 120 Score = 42.4 bits (98), Expect = 0.12 Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 6/176 (3%) Frame = +1 Query: 869890 KTLVVIPTYNERLALPVTLSGLFE----NQPDVDVLVVDDGSPDGTGEWVDEQARTDPRL 870057 K +V+P +NE +P+ + E + +++++ ++DGS D T +++ A +DP + Sbjct: 2 KISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPLV 61 Query: 870058 HVLHRSEKSGLGMAYIAGFEWALERDYEIICEFDADGSHRPLDLGQLLAVAQAGHADLVI 870237 L + G A AG + A + + D D + L+ QAG AD+V+ Sbjct: 62 IPLSFTRNFGKEPALFAGLDHATG---DAVIPIDVDLQDPIEVIPHLIEKWQAG-ADMVL 117 Query: 870238 GSRWVRG--GAIVDWPRSRFFLSRGANIYVNAVMGLGVKDATAGFRAYSREVLQNL 870399 R R G + F+ N + +++ FR SR V++N+ Sbjct: 118 AKRSDRSTDGRLKRKTAEWFYKLH------NKISNPKIEENVGDFRLMSRAVVENI 167 >ref|NP_813758.1|putative lysozyme Length = 146 Score = 45.8 bits (107), Expect = 0.011 Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 5/112 (4%) Frame = -3 Query: 1426810 LRGIQSYHQSGRGWSDVGYNVIADKYGRLWHARGGDIKKAVIGAHVAGHNTGTFGISVLG 1426631 +R I+ +H +GW D+GY+ + + G + + R D VIG+HV +N+ GI + G Sbjct: 30 VREIRQWHVQ-QGWLDIGYHFVIRRNGTVENGRPHD----VIGSHVKNYNSRALGICLAG 84 Query: 1426630 SYDKSAPPKK--TRDAVASAIAWKLSLDGVKPS--KSTVVAHRDL-ANTSCP 1426490 D P+ T + AS KL L K ++ +V H DL + +CP Sbjct: 85 GIDDKGQPQNNFTPEQFASL---KLLLIANKRQYPQAQIVGHHDLDSGKACP 133 >ref|NP_059582.1|O-antigen conversion protein Length = 310 Score = 45.8 bits (107), Expect = 0.011 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Frame = -2 Query: 1740593 VDLVVPVYNEEASLATSVATLLRATSEGDSHVTIIIADNASTDATPTIAEALAEKHPDVR 1740414 + LVVPV+NEE ++ T+ + + I+ ++ S DAT +I +A P V Sbjct: 3 ISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPLVI 62 Query: 1740413 YVRLEQK-GRGRALSKVWSASDADVVAYTDVDLATDIRALDPMVEVIRSGIAGIADVAIA 1740237 + + G+ AL + D V DVDL I + ++E ++G AD+ +A Sbjct: 63 PLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAG----ADMVLA 118 Query: 1740236 SR 1740231 R Sbjct: 119 KR 120 Score = 42.4 bits (98), Expect = 0.12 Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 4/174 (2%) Frame = +1 Query: 869890 KTLVVIPTYNERLALPVTLSGLFE----NQPDVDVLVVDDGSPDGTGEWVDEQARTDPRL 870057 K +V+P +NE +P+ + E + +++++ ++DGS D T +++ A +DP + Sbjct: 2 KISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPLV 61 Query: 870058 HVLHRSEKSGLGMAYIAGFEWALERDYEIICEFDADGSHRPLDLGQLLAVAQAGHADLVI 870237 L + G A AG + A + + D D + L+ QAG AD+V+ Sbjct: 62 IPLSFTRNFGKEPALFAGLDHATG---DAVIPIDVDLQDPIEVIPHLIEKWQAG-ADMVL 117 Query: 870238 GSRWVRGGAIVDWPRSRFFLSRGANIYVNAVMGLGVKDATAGFRAYSREVLQNL 870399 R R D R ++ N + +++ FR SR V++N+ Sbjct: 118 AKRSDRS---TDGRMKRKTAEWFYKLH-NKISNPKIEENVGDFRLMSRAVVENI 167 >ref|NP_046786.1|Int Length = 337 Score = 45.8 bits (107), Expect = 0.011 Identities = 47/180 (26%), Positives = 74/180 (41%) Frame = +3 Query: 488205 LSLDDIEAMLATTGGEEPAQIRAAALLELLYATGARISEAVGVDLDDLDLETSLVRLYGK 488384 L+ ++I +LA G+ + A+L L +TGAR EA + +++ + + + K Sbjct: 165 LTQEEIALLLAALDGDN----KKIAILCL--STGARWGEAARLKAENI-IHNRVTFVKTK 217 Query: 488385 GGKERIVPFGSHAATALGAWVSRTRPXXXXXXXXXXXXXXLFLNARGTRLSRQTAWQIVK 488564 K R VP A + LF +A R R+T I Sbjct: 218 TNKPRTVPISEAVAKMIA----------------DNKRGFLFPDADYPRF-RRTMKAIKP 260 Query: 488565 DAGELAGLEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTKVSEETLRE 488744 D L + H RHSFATH + G I +Q +LGH + T +Y + E L++ Sbjct: 261 D------LPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQD 314 Score = 45.8 bits (107), Expect = 0.011 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = +3 Query: 222534 HGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHVSMQRLQE 222671 H LRHS ATH + G + +Q +LGH+ + T +Y H + + LQ+ Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQD 314 >ref|YP_024873.1|nudix hydrolase motif containing protein Length = 578 Score = 45.8 bits (107), Expect = 0.011 Identities = 27/58 (46%), Positives = 32/58 (55%) Frame = -2 Query: 698264 GFAVLGLTEDGMLRLAREYRYPVGTWIYDLPGGAANSGEDPADAARREYEEETGLRPI 698091 G + T + +L L R P GTW LP G+ GE P DAARRE EETG RP+ Sbjct: 50 GVVYVAATSNRVLLLCR----PDGTW--GLPAGSIEEGETPEDAARRETCEETGYRPL 101 >ref|NP_878228.1|Int Length = 326 Score = 45.8 bits (107), Expect = 0.011 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Frame = +3 Query: 488562 KDAGELAGLEAEVSP----HTFRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTKVSE 488729 K G L ++ ++ P H RH+FA+H + G +I +Q++LGHAS+ T Y ++ Sbjct: 249 KFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAP 308 Query: 488730 ETLREVYA 488753 + L+ A Sbjct: 309 DYLQNAVA 316 Score = 43.9 bits (102), Expect = 0.041 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Frame = +3 Query: 222519 PDIGP----HGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHVSMQRLQ 222668 PDI P H LRH+ A+H + G ++ +Q++LGH+++ T Y H++ LQ Sbjct: 259 PDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQ 312 >ref|NP_695158.1|minor capsid protein Length = 1608 Score = 45.8 bits (107), Expect = 0.011 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 9/177 (5%) Frame = -1 Query: 57447 KELEKYIGLVDAAAIGM-----NTSVDETAMIFNRVQGSGKVMTEELQMVEQRMPGFSNA 57283 KE +K+ D A+G N ++ E+ F ++ GK E++ ++ R P F A Sbjct: 247 KETKKWTD--DFVALGSTLHVSNDALKESGEQFAKIVAGGKTSAEDMSVMISRFPMFGEA 304 Query: 57282 LQEHIGVASDDEFKKMVTAGEVGSDAFLETMDTFA---GDMAKEHAKSFDGLVDLAKAYV 57112 LQ+ G S + M AG++ S F E +D +E SF G+ K+ Sbjct: 305 LQKATG-KSMSQLYAMSAAGKLTSKQFTEALDYLGKKYRGSTEEAMNSFQGMSMYIKSRW 363 Query: 57111 GQIGEAMLGGVFEQSKDSIAEFVDWLSDPGVQAKAAELGKT-IGDVFSKVLGVVKNV 56944 + ++ F+ SK + + LSD + K A+L T I V ++ ++K V Sbjct: 364 SMLTGNIMASSFKMSKGVAQDMRNLLSD-NMMKKYADLASTAISHVTGWLVELIKYV 419 >ref|NP_852574.1|Collagen triple helix repeat protein Length = 536 Score = 45.8 bits (107), Expect = 0.011 Identities = 41/149 (27%), Positives = 53/149 (35%), Gaps = 9/149 (6%) Frame = -2 Query: 1601009 PATTASPPDSSCPDSTASSPRPNGSPNSKS-------PASPTKRPTGRRAAGPPTAPSSW 1600851 P P + P + P G PNS + P P+ PTG A PT P Sbjct: 73 PTGPTGPTGPTGPTGSTGLTGPTG-PNSDTGPTGPTGPTGPSDGPTGPTGATGPTGPPDG 131 Query: 1600850 PQGSTFP--APVPRSTRTKTARSSPQAWPGPNTSASPRCECASTAETGTPPN*AKS*TLT 1600677 P G T P + P T + P GP S P + T TG + + + Sbjct: 132 PTGDTGPTGSTGPTGDTGPTGSTGPTGDTGPTGSTGPTGDTGPTGSTGPTGDTGPTGSTG 191 Query: 1600676 PGGSGGVPSMTLSRAATP*RCEQSMPTAT 1600590 P G G T S T C + +PT T Sbjct: 192 PTGDTG---PTGSTGPTGPGCIEPLPTFT 217 >ref|NP_839878.1|Int Length = 326 Score = 45.8 bits (107), Expect = 0.011 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Frame = +3 Query: 488562 KDAGELAGLEAEVSP----HTFRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTKVSE 488729 K G L ++ ++ P H RH+FA+H + G +I +Q++LGHAS+ T Y ++ Sbjct: 249 KFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAP 308 Query: 488730 ETLREVYA 488753 + L+ A Sbjct: 309 DYLQNAVA 316 Score = 43.9 bits (102), Expect = 0.041 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Frame = +3 Query: 222519 PDIGP----HGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHVSMQRLQ 222668 PDI P H LRH+ A+H + G ++ +Q++LGH+++ T Y H++ LQ Sbjct: 259 PDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQ 312 >ref|NP_932523.1|hypothetical protein Length = 155 Score = 45.8 bits (107), Expect = 0.011 Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 5/156 (3%) Frame = +2 Query: 685601 VVRAYKIAEQAHRGQTRKSGDDYITHPVAVATILAEIGMLPVTLAAALLHDTVEDT---- 685768 + A + A H GQ K G YI HP+ + +LHD VED Sbjct: 8 LAEAIQYATNRHAGQFDKGGAPYILHPLQLMHWARRDREALDVQILCVLHDVVEDCYDDR 67 Query: 685769 SYSLNELTEEFGPEVAAMVDGVTKLDKLTYGQAAQSETVRKMIVAMAKDIRVLVIKLADR 685948 L ++ FG +A +VD VTK D E+ ++ + DIR + K D Sbjct: 68 EEGLRDINTLFGSSMAQLVDNVTKRD---------GESYECYLIRVNSDIRSVKCKRYDL 118 Query: 685949 LHNARTWRFVPAS-SSTKKARETLEIYAPLAHRLGM 686053 +NA R + T++A + + Y + + G+ Sbjct: 119 RNNADLRRLKGVTPKDTERAVKYMTAYYNMGEKWGL 154 >ref|NP_039690.1|predicted 86.4kd protein; 52Kd observed Length = 837 Score = 45.4 bits (106), Expect = 0.014 Identities = 54/252 (21%), Positives = 104/252 (41%), Gaps = 2/252 (0%) Frame = -1 Query: 56346 AIITAWNWIKTKTSDVWNAIINWIKDTWNKIITTISDAVNKVKNWISDAWTMIKTMT--A 56173 A+ TA + + II+ + + +++ +++ V + N + ++ + A Sbjct: 458 ALATALGQVAGAVLQLAPTIISTLVPAFVQLVPKVAELVPTIVNLVQSFANLMPVVLPLA 517 Query: 56172 KLWNGIKMAIARAIVSAVRTVQGKVQQIKNWITNTWNRVKNTTSNAWSGIKSAVRNGING 55993 + + A+ + VS + G + + I+N +V S+ SG + Sbjct: 518 QALVSVAGAVIQVGVSIGGALIGALANLTEIISNVIKKVSEWVSSFSSGAQQIAAKAAE- 576 Query: 55992 AVNFVRRLPGRALSALGNIGSKLYNSGKAMIDGFKDGIXXXXXXXXXXVKDGLSRIRNFF 55813 LPG SAL N+ + +GK ++ G +GI K+ S + Sbjct: 577 -------LPGMIQSALANLMAIGLQAGKDLVQGLINGIGGMVSAAVNKAKELASSVAGAV 629 Query: 55812 PFSPAKEGPFSGKGWTWYSGQSMSEGLADGMASGTSDVVRQSEALMKAAAFDAPSIPGMT 55633 E P K +T Y GQ +EG +GM +G V+ +++ L AA + ++ T Sbjct: 630 KGFLGIESP--SKLFTEY-GQFTAEGFGNGMEAGFKPVIERAKDL---AAELSRAMESGT 683 Query: 55632 RPSSSASGLDED 55597 PS +GLD++ Sbjct: 684 DPSGILAGLDQN 695 >ref|NP_663692.1|putative lysin Length = 429 Score = 45.4 bits (106), Expect = 0.014 Identities = 32/112 (28%), Positives = 54/112 (48%) Frame = -3 Query: 528637 SGTSGETVPVTHGGRTYKTRDGDTLYGVASKHGVSVPALAELNAISPRQNLHQGQVLSLP 528458 + TS T P +T+ + GDTL G+AS G + LA N++S ++ GQV+ Sbjct: 321 ASTSQPTTPA----KTHIVQSGDTLSGIASNWGTNWQELARQNSLSNPNMIYTGQVIRF- 375 Query: 528457 EKNDLPDTDPSHVVAPGETLAGIAARHQMSPGSLRRANSMGEESFLQVGELL 528302 T ++ V+ G+ L+ IA+R + SL N + + + G+ L Sbjct: 376 TGGQSGATARTYTVSSGDNLSSIASRLGTTVQSLVSMNGISNPNLIYAGQTL 427 >ref|NP_958556.1|putative integrase Length = 391 Score = 45.4 bits (106), Expect = 0.014 Identities = 44/189 (23%), Positives = 81/189 (42%) Frame = +1 Query: 66211 AERQLLANLRSRVESAGDTISGNTTVSSLGKIWTGNLGKSDEHTEQTIERYESIVEKIIG 66390 AE + + N S+ + VS L +W N + E T + + + + + Sbjct: 47 AEAEAVFNKLSQTKPDNFVKQKQIKVSELRDLWFENY--KTQVKESTANKNKQVFDNHVI 104 Query: 66391 PALGEYLIMEATVSRVDGFLRALADKTPGRAKTTKSVLKSMFDLAVRHDALRTNPVREVR 66570 P G + + TV+ + + A K + + + ++F+ +R + + NP++ + Sbjct: 105 PDFGNQYVDKITVAELQKWADRKA-KQIVKYRDAINEFNALFEYGIRLNYVSENPLKRII 163 Query: 66571 LPTKRKKPVQALTIDEVGTLREGLRKWQAADGVKGPTRSTELLDVVDLMLGTGMRIGEVL 66750 +P K +P + T V T RE L ++ G + T L+ TG+R E L Sbjct: 164 IPKKTSRPRRD-TEHNVYT-REELNQFLEVAKEYGLVQYTYF----KLLSATGLRKSEAL 217 Query: 66751 ALRWSDVDL 66777 AL W D+DL Sbjct: 218 ALTWQDIDL 226 >ref|NP_049796.1|UvsW RNA-DNA and DNA-DNA helicase, ATPase Length = 587 Score = 45.4 bits (106), Expect = 0.014 Identities = 74/324 (22%), Positives = 133/324 (41%), Gaps = 27/324 (8%) Frame = -1 Query: 379518 WHQSEC--------RGVVEAVTGAGKTMI-GITAAFEAFRQGIKVLVLVPTAELQSQWQR 379366 W+Q + R ++ T AGK++I + A + K+L++VPT L +Q Sbjct: 116 WYQKDAVFEGLVNRRRILNLPTSAGKSLIQALLARYYLENYEGKILIIVPTTALTTQMAD 175 Query: 379365 RLME--TLPQADVGTLGNG-RRDSLGACDILVAIINSATRAELLKE--HSDGLLIADECH 379201 ++ A + +G G +D D V + T + KE G+++ DECH Sbjct: 176 DFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECH 235 Query: 379200 RYAAKSFSKALR--SDFRYRLGLTATYQRPDKANTAVLDPYFGGVVFQMWYERALRDGVI 379027 KS S + ++ ++ GL+ + R KAN FG + + + + DG + Sbjct: 236 LATGKSISSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIFKPVTTSKLMEDGQV 294 Query: 379026 AEFDIAFVGIGLTDS-----ERGEYQVASSAISKLGMSLKN----KLNLQEASFDQFMVA 378874 E I + + D + YQ I+ G+S +N KL ++ A D+ A Sbjct: 295 TELKINSIFLRYPDEFTTKLKGKTYQEEIKIIT--GLSKRNKWIAKLAIKLAQKDE--NA 350 Query: 378873 IQTFAKKKNDPSPIVFMARKYLDAVVKRQQVLTNAKNKMKIL--EGIAPVIAESKGSLIF 378700 F + + + +Y +V T +N MK L G +I S G +F Sbjct: 351 FVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYG--VF 408 Query: 378699 SQTVDSSSQAALLLQRAGIETKAV 378628 S + + ++L G+++K + Sbjct: 409 STGISVKNLHHVVLAH-GVKSKII 431 >ref|NP_052084.1|N-acetylmuramoyl-L-alanine amidase Length = 151 Score = 45.4 bits (106), Expect = 0.014 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 1/108 (0%) Frame = -3 Query: 1426810 LRGIQSYHQSGRGWSDVGYNVIADKYGRLWHARGGDIKKAVIGAHVAGHNTGTFGISVLG 1426631 +R I+ +H+ +GW DVGY+ I + G + R + +G+HV G+N + G+ ++G Sbjct: 30 VREIRQWHKE-QGWLDVGYHFIIKRDGTVEAGRD----ELAVGSHVKGYNHNSVGVCLVG 84 Query: 1426630 SY-DKSAPPKKTRDAVASAIAWKLSLDGVKPSKSTVVAHRDLANTSCP 1426490 DK A A+ L K S + AH D+A +CP Sbjct: 85 GIDDKGKFDANFTPAQMQALRSLLVTLLAKYEGSILRAHHDVAPKACP 132 >ref|NP_818335.1|gp34 Length = 1599 Score = 45.1 bits (105), Expect = 0.018 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 6/89 (6%) Frame = +3 Query: 254568 GVRPGSGTSDHYT---GGAVDIMI-DGSTADRIAEYLIQNSGALDVKYVIWKQRIWQPGS 254735 G+ G D Y GA+DIM+ D +T ++ + ++ + +V I+ + + G Sbjct: 1046 GLTVGDHAPDQYGEHGNGALDIMVPDKATGQKVLQQVLSDP---NVYGAIFDRTSYGYGR 1102 Query: 254736 GWSS--MEDRGSPTDNHMDHVHASFN*SN 254816 G MEDRGSPT NH DHVHA + N Sbjct: 1103 GPEGRPMEDRGSPTQNHEDHVHAWYKPGN 1131 Score = 44.3 bits (103), Expect = 0.031 Identities = 42/150 (28%), Positives = 61/150 (40%) Frame = +1 Query: 1796869 KSGDKAQAAGSTPEQGEAIAGGTVTAQKKKKLPLGDVKPHVQEAAEVIYDEYDGITGVGG 1797048 KS D + S+ + GG V+ LP + Q A+ + G Sbjct: 987 KSKDGLEDYDSSGNYVGSSGGGQVSYAPGGGLPQSPMAAPGQSPADFARNTMLPFWQSQG 1046 Query: 1797049 YRSGSTSRDPNGHPVGLAVDFMVPLNIDGKALGDDIAKFVIDNHEALNIKYVIWYQRIYN 1797228 G + D G A+D MVP KA G + + V+ + N+ I+ + Y Sbjct: 1047 LTVGDHAPDQYGEHGNGALDIMVP----DKATGQKVLQQVLSDP---NVYGAIFDRTSYG 1099 Query: 1797229 VERADEGWRKMPDRGGDTQNHKDHPHVSFQ 1797318 R EG R M DRG TQNH+DH H ++ Sbjct: 1100 YGRGPEG-RPMEDRGSPTQNHEDHVHAWYK 1128 >ref|NP_052278.1|Int Length = 336 Score = 45.1 bits (105), Expect = 0.018 Identities = 44/180 (24%), Positives = 67/180 (37%) Frame = +3 Query: 488205 LSLDDIEAMLATTGGEEPAQIRAAALLELLYATGARISEAVGVDLDDLDLETSLVRLYGK 488384 L+ D I +L + + ++ + ATGAR SEA + L + + K Sbjct: 170 LTHDQISQLLGECNRHDHPDLET--VVRICLATGARWSEAESLRKSQL-AKYKITYTNTK 226 Query: 488385 GGKERIVPFGSHAATALGAWVSRTRPXXXXXXXXXXXXXXLFLNARGTRLSRQTAWQIVK 488564 G K R VP +L LF + G S I Sbjct: 227 GRKNRTVPISKELYESL----------------PDDKKGRLFSDCYGAFRSALERTGIEL 270 Query: 488565 DAGELAGLEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTKVSEETLRE 488744 AG+L H RH+FA+H + G +I V+Q +LGH + T Y + + L + Sbjct: 271 PAGQLT--------HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLED 322 Score = 43.5 bits (101), Expect = 0.053 Identities = 38/153 (24%), Positives = 62/153 (40%) Frame = +3 Query: 222222 ILEMLYATAVRVSELTGLNRGDVDHQRSMITVLGKGNKERRVPYGKPAQTALQKWLSLRD 222401 ++ + AT R SE L + + + T KG K R VP K L + Sbj