Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold1 Genome size: 368836 Host's GC content: 58.77 Predicted Codon Position GC: 1st: 63.04 2nd: 42.57 3rd: 67.14 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold2 Genome size: 155697 Host's GC content: 61.26 Predicted Codon Position GC: 1st: 64.58 2nd: 43.24 3rd: 71.35 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold3 Genome size: 150521 Host's GC content: 59.35 Predicted Codon Position GC: 1st: 63.40 2nd: 42.72 3rd: 68.12 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold4 Genome size: 135815 Host's GC content: 58.35 Predicted Codon Position GC: 1st: 62.79 2nd: 42.46 3rd: 66.43 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold5 Genome size: 127313 Host's GC content: 60.91 Predicted Codon Position GC: 1st: 64.36 2nd: 43.14 3rd: 70.75 >PredictedProphage1 Length: 34532 Number of hits = 21 GC Coding First Second Third 63.73 64.63 58.74 47.05 88.09 Left Right Strand Best Blast Hit Score Evalue 192 773 -1 ref|NP_839940.1|putative lysin 159bits(402) 6e-38 1920 2768 -1 ref|NP_958675.1|reverse transcriptase 74.3bits(181) 2e-12 5337 5516 -1 ref|NP_112714.1|NPS 41.6bits(96) 0.018 7410 7712 -1 ref|NP_958595.1|putative protein 42.0bits(97) 0.014 8976 9887 -1 ref|YP_164431.1|host specificity protein 85.1bits(209) 1e-15 11236 13725 -1 ref|NP_044960.1|unknown 263bits(672) 3e-69 14712 14888 -1 ref|NP_862885.1|unknown 47.4bits(111) 3e-04 15574 15849 -1 ref|NP_795525.1|hypothetical protein 45.1bits(105) 0.002 15873 16172 -1 ref|NP_695062.1|hypothetical protein 47.4bits(111) 3e-04 16232 16543 -1 ref|NP_695061.1|hypothetical protein 61.2bits(147) 2e-08 16995 17870 -1 ref|NP_817980.1|gp7 160bits(404) 3e-38 19980 21272 -1 ref|NP_817977.1|gp4 157bits(396) 3e-37 21392 22759 -1 ref|NP_569740.1|putative terminase gp4 275bits(704) 6e-73 22854 23012 -1 ref|NP_569739.1|hypothetical protein 54.3bits(129) 3e-06 23265 23438 -1 ref|NP_569825.1|hypothetical protein 58.2bits(139) 2e-07 25223 25474 -1 ref|NP_818038.1|gp65 53.5bits(127) 5e-06 27244 27438 -1 ref|NP_848270.1|Gp52 protein 63.2bits(152) 6e-09 28136 28468 -1 ref|NP_817408.1|gp70 62.8bits(151) 8e-09 30422 30811 -1 ref|NP_817551.1|gp102 126bits(316) 6e-28 32281 33024 -1 ref|YP_024459.1|hypothetical protein 64.3bits(155) 3e-09 34544 34723 -1 ref|NP_695143.1|repressor 46.6bits(109) 6e-04 >PredictedProphage2 Length: 13367 Number of hits = 5 GC Coding First Second Third 60.72 62.32 65.06 51.20 70.68 Left Right Strand Best Blast Hit Score Evalue 49623 50141 -1 ref|NP_958678.1|Bbp9 38.9bits(89) 0.12 53810 53926 -1 ref|NP_510939.1|similar to phage A118 gp7 40.0bits(92) 0.052 58694 59032 -1 ref|NP_046564.1|unknown 42.4bits(98) 0.011 59904 60086 -1 ref|YP_024793.1|Pas7 37.0bits(84) 0.44 62654 62989 -1 ref|NP_958267.1|hypothetical protein 43.1bits(100) 0.006 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold6 Genome size: 123910 Host's GC content: 59.99 Predicted Codon Position GC: 1st: 63.80 2nd: 42.90 3rd: 69.21 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold7 Genome size: 118448 Host's GC content: 59.74 Predicted Codon Position GC: 1st: 63.64 2nd: 42.83 3rd: 68.78 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold8 Genome size: 115697 Host's GC content: 58.83 Predicted Codon Position GC: 1st: 63.08 2nd: 42.58 3rd: 67.24 >PredictedProphage1 Length: 10298 Number of hits = 6 GC Coding First Second Third 59.15 61.25 59.51 39.06 85.19 Left Right Strand Best Blast Hit Score Evalue 54468 54932 -1 ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase 56.2bits(134) 6e-07 55044 55952 -1 ref|NP_046714.1|unknown 239bits(609) 5e-62 56368 58422 -1 ref|YP_024510.1|putative ribonucleotide reductase large subunit 450bits(1157) 1e-125 58677 59027 -1 ref|NP_046712.1|similar to Bacillus subtilis NrdI (YmaA) 49.7bits(117) 6e-05 59138 59350 -1 ref|NP_817487.1|gp37 62.4bits(150) 9e-09 64343 64765 1 ref|NP_612994.1|hypothetical protein 38.1bits(87) 0.18 >PredictedProphage2 Length: 9096 Number of hits = 5 GC Coding First Second Third 53.69 56.84 61.90 40.70 67.91 Left Right Strand Best Blast Hit Score Evalue 82987 83370 -1 ref|NP_438136.1|hypothetical protein 41.6bits(96) 0.016 84132 84662 -1 ref|NP_665964.1|putative plasmid partitioning protein Soj 119bits(299) 5e-26 87655 87852 -1 ref|NP_043468.1|hypothetical protein 52.0bits(123) 1e-05 89273 89671 1 ref|NP_076710.1|DnaC 38.9bits(89) 0.11 90949 92082 1 ref|NP_817935.1|gp84 51.2bits(121) 2e-05 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold9 Genome size: 91587 Host's GC content: 58.98 Predicted Codon Position GC: 1st: 63.17 2nd: 42.62 3rd: 67.49 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold10 Genome size: 80363 Host's GC content: 59.99 Predicted Codon Position GC: 1st: 63.79 2nd: 42.90 3rd: 69.20 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold11 Genome size: 73473 Host's GC content: 58.94 Predicted Codon Position GC: 1st: 63.15 2nd: 42.61 3rd: 67.42 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold12 Genome size: 65264 Host's GC content: 59.13 Predicted Codon Position GC: 1st: 63.26 2nd: 42.66 3rd: 67.74 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold13 Genome size: 60127 Host's GC content: 62.38 Predicted Codon Position GC: 1st: 65.26 2nd: 43.54 3rd: 73.25 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold14 Genome size: 51744 Host's GC content: 58.48 Predicted Codon Position GC: 1st: 62.86 2nd: 42.49 3rd: 66.65 >PredictedProphage1 Length: 9202 Number of hits = 5 GC Coding First Second Third 61.99 63.51 61.51 55.52 73.50 Left Right Strand Best Blast Hit Score Evalue 32165 32899 1 ref|NP_064745.1|gp7 37.0bits(84) 0.19 34254 34757 -1 ref|NP_899369.1|GTP cyclohydrolase I 121bits(304) 6e-27 35599 36300 -1 ref|NP_817947.1|gp96 70.5bits(171) 2e-11 38832 39467 -1 ref|NP_064745.1|gp7 37.4bits(85) 0.15 41091 41366 -1 ref|NP_958267.1|hypothetical protein 37.7bits(86) 0.11 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold15 Genome size: 43427 Host's GC content: 58.68 Predicted Codon Position GC: 1st: 62.99 2nd: 42.54 3rd: 66.99 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold16 Genome size: 41424 Host's GC content: 59.50 Predicted Codon Position GC: 1st: 63.49 2nd: 42.76 3rd: 68.37 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold17 Genome size: 37986 Host's GC content: 55.72 Predicted Codon Position GC: 1st: 61.16 2nd: 41.74 3rd: 61.97 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold18 Genome size: 35462 Host's GC content: 60.38 Predicted Codon Position GC: 1st: 64.03 2nd: 43.00 3rd: 69.86 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold19 Genome size: 33342 Host's GC content: 59.86 Predicted Codon Position GC: 1st: 63.72 2nd: 42.86 3rd: 68.99 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold20 Genome size: 33002 Host's GC content: 61.48 Predicted Codon Position GC: 1st: 64.71 2nd: 43.30 3rd: 71.72 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold21 Genome size: 32598 Host's GC content: 57.22 Predicted Codon Position GC: 1st: 62.09 2nd: 42.15 3rd: 64.52 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold22 Genome size: 27514 Host's GC content: 56.28 Predicted Codon Position GC: 1st: 61.51 2nd: 41.90 3rd: 62.93 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold23 Genome size: 25053 Host's GC content: 59.62 Predicted Codon Position GC: 1st: 63.57 2nd: 42.80 3rd: 68.58 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold24 Genome size: 23168 Host's GC content: 59.94 Predicted Codon Position GC: 1st: 63.77 2nd: 42.89 3rd: 69.13 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold25 Genome size: 22374 Host's GC content: 58.68 Predicted Codon Position GC: 1st: 62.99 2nd: 42.54 3rd: 66.99 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold26 Genome size: 22290 Host's GC content: 58.40 Predicted Codon Position GC: 1st: 62.82 2nd: 42.47 3rd: 66.52 >PredictedProphage1 Length: 11519 Number of hits = 5 GC Coding First Second Third 58.36 59.94 61.31 48.86 69.65 Left Right Strand Best Blast Hit Score Evalue 7024 7281 1 ref|NP_958701.1|repressor protein cI 45.8bits(107) 2e-04 9670 10488 -1 ref|NP_064745.1|gp7 38.1bits(87) 0.039 14379 14552 -1 ref|NP_818041.1|gp68 91.3bits(225) 4e-18 16906 17526 1 ref|NP_818503.1|gp203 52.0bits(123) 3e-06 18438 18542 1 ref|NP_817544.1|gp95 44.3bits(103) 5e-04 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold27 Genome size: 21318 Host's GC content: 60.28 Predicted Codon Position GC: 1st: 63.97 2nd: 42.98 3rd: 69.70 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold28 Genome size: 20249 Host's GC content: 58.66 Predicted Codon Position GC: 1st: 62.98 2nd: 42.54 3rd: 66.96 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold29 Genome size: 19513 Host's GC content: 60.30 Predicted Codon Position GC: 1st: 63.98 2nd: 42.98 3rd: 69.72 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold30 Genome size: 19284 Host's GC content: 61.32 Predicted Codon Position GC: 1st: 64.61 2nd: 43.26 3rd: 71.45 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold31 Genome size: 19218 Host's GC content: 57.58 Predicted Codon Position GC: 1st: 62.31 2nd: 42.25 3rd: 65.12 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold32 Genome size: 17850 Host's GC content: 57.88 Predicted Codon Position GC: 1st: 62.49 2nd: 42.33 3rd: 65.63 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold33 Genome size: 14021 Host's GC content: 60.74 Predicted Codon Position GC: 1st: 64.26 2nd: 43.10 3rd: 70.48 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold34 Genome size: 11557 Host's GC content: 56.59 Predicted Codon Position GC: 1st: 61.70 2nd: 41.98 3rd: 63.45 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold35 Genome size: 10625 Host's GC content: 57.03 Predicted Codon Position GC: 1st: 61.97 2nd: 42.10 3rd: 64.19 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold36 Genome size: 10784 Host's GC content: 55.79 Predicted Codon Position GC: 1st: 61.21 2nd: 41.76 3rd: 62.09 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold38 Genome size: 8927 Host's GC content: 59.92 Predicted Codon Position GC: 1st: 63.75 2nd: 42.88 3rd: 69.08 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold39 Genome size: 5371 Host's GC content: 64.68 Predicted Codon Position GC: 1st: 66.68 2nd: 44.16 3rd: 77.14 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold40 Genome size: 5122 Host's GC content: 61.46 Predicted Codon Position GC: 1st: 64.70 2nd: 43.29 3rd: 71.69 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold41 Genome size: 4768 Host's GC content: 62.81 Predicted Codon Position GC: 1st: 65.53 2nd: 43.66 3rd: 73.98 Prophage Finder Output Genome file: temp/bifidolc.txt Sequence Header: >Scaffold42 Genome size: 2468 Host's GC content: 57.29 Predicted Codon Position GC: 1st: 62.14 2nd: 42.17 3rd: 64.64