BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Scaffold1 (368,836 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817564.1|gp117 425 e-117 ref|NP_818503.1|gp203 379 e-104 ref|NP_597931.1|PhoH-like protein 135 3e-30 ref|NP_839905.1|putative methylase 127 7e-28 ref|NP_061653.1|transposase 126 1e-27 ref|YP_006926.1|putative PhoH-like protein 125 3e-27 ref|NP_150145.1|putative DNA methylase 119 1e-25 ref|NP_899539.1|PhoH domain protein 117 9e-25 ref|YP_024521.1|putative DNA repair protein 115 2e-24 ref|NP_818252.1|gp201 115 2e-24 ref|NP_899293.1|topoisomerase II large subunit 109 2e-22 ref|NP_046694.1|modification methylase 102 2e-20 ref|NP_932362.1|topoisomerase II large subunit 100 7e-20 ref|YP_164688.1|recombinase A 100 1e-19 ref|NP_943883.1|topoisomerase II large subunit 100 1e-19 ref|NP_061524.1|Orf28 97 7e-19 ref|NP_861694.1|gp60plus39 large subunit topoisomerase II 89 2e-16 ref|NP_891577.1|topoisomerase II large subunit 89 3e-16 ref|NP_878240.1|Mth 86 2e-15 ref|YP_195230.1|PhoH 85 5e-15 ref|NP_818425.1|gp127 79 4e-13 ref|YP_195169.1|RecA-like recombination protein 79 4e-13 ref|NP_049656.2|UvsX RecA-like recombination protein 78 6e-13 ref|NP_612994.1|hypothetical protein 77 1e-12 ref|NP_049482.1|serine 77 1e-12 ref|NP_958559.1|putative protein 77 1e-12 ref|NP_445672.1|putative helicase 74 7e-12 ref|NP_852553.1|hypothetical protein 72 3e-11 ref|NP_803278.1|dUTPase 71 7e-11 ref|NP_861734.1|UvsX RecA-like recombination protein 71 7e-11 ref|NP_058491.1|dUTPase 68 6e-10 ref|NP_665998.1|putative C5-cytosine methyltransferase 67 8e-10 ref|NP_040341.1|putative transposase 67 8e-10 ref|NP_818403.1|gp105 67 1e-09 ref|NP_899269.1|deoxyuridine 5'-triphosphate nucleotidohydrolase 67 1e-09 ref|NP_803328.1|dUTPase 66 2e-09 ref|NP_958659.1|77ORF021 66 2e-09 ref|NP_075491.1|phi PVL ORF 53 analogue 65 3e-09 ref|NP_943888.1|hypothetical protein 65 3e-09 ref|NP_695082.1|putative repressor 65 4e-09 ref|NP_899256.1|UvsX 65 5e-09 ref|NP_943894.1|UvsX 64 9e-09 ref|YP_024453.1|putative PhoH-related protein 64 1e-08 ref|NP_046572.1|ABC transporter 63 2e-08 ref|NP_046717.1|putative dUTPase 63 2e-08 ref|YP_006959.1|putative deoxyUTP pyrophosphatase 61 6e-08 ref|NP_818053.1|gp80 60 2e-07 ref|NP_758949.1|ORF58 59 2e-07 ref|NP_049621.1|gp39 topoisomerase II, large subunit, N-terminal... 59 2e-07 ref|NP_891595.1|UvsX 59 2e-07 ref|NP_818426.1|gp128 59 3e-07 ref|NP_817858.1|gp7 58 5e-07 ref|NP_817742.1|gp65 58 5e-07 ref|NP_878228.1|Int 57 1e-06 ref|NP_839878.1|Int 57 1e-06 ref|NP_663639.1|putative cI-like repressor 55 4e-06 ref|NP_958514.1|putative cI repressor 54 7e-06 ref|NP_663658.1|putative dUTPase 53 2e-05 ref|NP_958626.1|77ORF011 53 2e-05 ref|NP_112684.1|DUT 53 2e-05 ref|NP_108702.1|dUTPase 53 2e-05 ref|NP_695048.1|dUTPase 53 2e-05 ref|NP_996693.1|dUTPase 53 2e-05 ref|NP_076719.1|dUTPase 53 2e-05 ref|NP_076663.1|dUTPase 53 2e-05 ref|NP_076600.1|dUTPase 53 2e-05 ref|NP_813725.1|gp9.1 52 5e-05 ref|NP_839892.1|putative repressor protein 51 6e-05 ref|NP_052278.1|Int 50 1e-04 ref|NP_046786.1|Int 48 7e-04 ref|NP_958084.1|gp27 48 7e-04 ref|NP_112667.1|CI 46 0.003 ref|NP_705643.1|gp17 46 0.003 ref|NP_958122.1|gp17 46 0.003 ref|NP_932523.1|hypothetical protein 46 0.003 ref|NP_536807.1|integrase 45 0.003 ref|NP_958267.1|hypothetical protein 45 0.003 ref|NP_803358.1|cI-like repressor 45 0.006 ref|NP_058469.1|repressor 45 0.006 ref|NP_076576.1|repressor 45 0.006 ref|NP_818041.1|gp68 44 0.007 ref|NP_817403.1|gp65 44 0.007 ref|NP_542557.1|deaminase protein deoxycytidine triphosphate-lik... 44 0.010 ref|NP_043466.1|integrase 44 0.010 ref|NP_665964.1|putative plasmid partitioning protein Soj 44 0.013 ref|NP_795486.1|hypothetical protein 44 0.013 ref|NP_944255.1|hypothetical protein; similar to DNA methyltrans... 44 0.013 ref|NP_944257.1|putative DnaC 42 0.037 ref|NP_958255.1|hypothetical protein 42 0.037 ref|NP_835600.1|putative glycosyltransferases 42 0.048 ref|NP_112719.1|ORF56 41 0.063 ref|NP_046584.1|putative transglycosylase 41 0.063 ref|NP_049618.1|gp60 topoisomerase II, large subunit, C-terminal... 41 0.082 ref|YP_024726.1|gp53 41 0.082 ref|NP_945098.1|gp67 41 0.082 ref|NP_049875.1|gp52 topoisomerase II, medium subunit 40 0.14 ref|YP_024499.1|putative helicase 40 0.18 ref|NP_862871.1|gp32 39 0.24 ref|YP_006605.1|Gp25 39 0.24 ref|NP_695118.1|putative tail protein 39 0.41 ref|NP_038305.1|ORF5 39 0.41 ref|NP_064745.1|gp7 39 0.41 ref|YP_195171.1|hypothetical protein 39 0.41 ref|YP_025058.1|DnaC 39 0.41 >ref|NP_817564.1|gp117 Length = 320 Score = 425 bits (1093), Expect = e-117 Identities = 211/317 (66%), Positives = 262/317 (82%), Gaps = 1/317 (0%) Frame = -1 Query: 357007 ALDTALAQVEKSFGKGSAMRLGDQPEQNVEVIPTGSLALDMALGIGGLPKGRIVEIYGPE 356828 +L ALA+V+K FG GSAM+LGD+P Q V+VIPTGS+ALD ALGIGG P+GR+VEIYGPE Sbjct: 2 SLKEALAEVDKRFGAGSAMKLGDKP-QTVDVIPTGSIALDGALGIGGYPRGRVVEIYGPE 60 Query: 356827 SSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGEQALEI 356648 SSGK+TL LH VANAQK GG AAYIDAEH+LDP YA+ LGVD D+L+V QPD GEQALEI Sbjct: 61 SSGKSTLCLHAVANAQKAGGNAAYIDAEHSLDPEYAKALGVDLDNLVVVQPDTGEQALEI 120 Query: 356647 ADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTT 356468 D+L++SG L ++V+DSVAALVP+AE+EG++GDSHVGL ARLMSQA+RK+TG ++ T Sbjct: 121 VDLLVKSGELSIVVVDSVAALVPRAELEGDIGDSHVGLHARLMSQAMRKLTGTISSTNTL 180 Query: 356467 AIFINQLREKIG-VFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTRVKVV 356291 +++NQLREKIG V +G ETTTGGKAL+FYASVR+D+RRI T K GDEAVGNRTRVKVV Sbjct: 181 TLWVNQLREKIGNVGYGPNETTTGGKALRFYASVRMDVRRIATEKEGDEAVGNRTRVKVV 240 Query: 356290 KNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGREKVRQ 356111 KNK+APP ++AEF ++YGEGISRE ++D+A G+VKKSG+WF Y + QG+ K Q Sbjct: 241 KNKLAPPHRNAEFSVVYGEGISREVELLDLAVSQGLVKKSGAWFKYGDKNVAQGKPKAVQ 300 Query: 356110 FLKDNPAITEEIENKVK 356060 +LK NP IT+ IE ++ Sbjct: 301 WLKANPDITDSIEQAIR 317 >ref|NP_818503.1|gp203 Length = 442 Score = 379 bits (974), Expect = e-104 Identities = 202/399 (50%), Positives = 274/399 (68%), Gaps = 1/399 (0%) Frame = -1 Query: 361096 LTSTFEQFNVDAKVVGFLRGPSVTQYEVELGPGVKVEKVTNLQRNIAYAVASSDVRILSP 360917 + S +F+++AKV G GPSVT+YE+ LGPGV+++KV LQ +AYA+A+ VR+++P Sbjct: 13 IISALREFDIEAKVTGRTDGPSVTRYEITLGPGVRIQKVAQLQSQLAYALATESVRVVAP 72 Query: 360916 IPGKSAIGIEIPNEDREIVHLGDVLRSDKAVGDPNPMLSGIGKDVEGHFVTADLTKMPHL 360737 IPGK+A+GIE+P +R+ V L ++ D +P+ +GKDVEG ++ +L KMPHL Sbjct: 73 IPGKTAVGIELPRPERQTVRLQHIVPEDD-----HPLTVAVGKDVEGKDISLNLAKMPHL 127 Query: 360736 LVAGATGSGKSSFINSMLTSIIMRATPEQVRLIMVDPKRVELSAYAGIPHLLTPIITDPK 360557 LVAGATGSGKSSFINSML S++ RATP++V+LIM+DPK VEL+ Y GIPHLL P++T+ Sbjct: 128 LVAGATGSGKSSFINSMLVSLLYRATPDRVKLIMIDPKCVELTPYNGIPHLLQPVVTEAD 187 Query: 360556 KAAQALEWVVKEMDARYSDLEFFGFRHVKDFNEAVRAGKVHAPAGSQRKVAPYPYILVVV 360377 +A + L W+ EMD RY ++ G RH + PYI+VVV Sbjct: 188 EAVKTLRWLTVEMDDRYRQMQEAGVRHAEKLG--------------------LPYIVVVV 227 Query: 360376 DEMADLMMVA-KNDVESSIQRITQLARAAGVHLVLATQRPSVDVVTGLIKANIPSRLAFA 360200 DE+ADLMM K +VE++I RI Q ARAAG+HLVLATQRPSVDVVTGLIK+N+PSRL+FA Sbjct: 228 DELADLMMGGYKKEVEANIVRIAQKARAAGIHLVLATQRPSVDVVTGLIKSNVPSRLSFA 287 Query: 360199 TSSATDSRVILDTVGAETLIGQGDALFLPMGSAKPIRVQGSWVSESEIRKAVEFVRTQRK 360020 T+S TDSRVILD GAE L+G GD LFLP+G+ IR+QG++VS+ EI AV VR Sbjct: 288 TASLTDSRVILDEGGAEQLMGMGDGLFLPVGARSAIRIQGAFVSDGEIEAAVNNVRV--T 345 Query: 360019 PKYREDIEQMAKEAEKKDSMEPDEEIGDDMDVLLQAAEL 359903 + E + ++ E E +M P + +D L++ AE+ Sbjct: 346 ARVEEKVRELNPEPEDLANMVP---VKFFLDQLIETAEM 381 >ref|NP_597931.1|PhoH-like protein Length = 384 Score = 135 bits (339), Expect = 3e-30 Identities = 73/200 (36%), Positives = 116/200 (58%), Gaps = 1/200 (0%) Frame = +2 Query: 32171 KTAGQVAYVNAIESHTITFGIGPAGTGKTYLAVAKAVRAFQDKQIRRIILTRPAVEAGES 32350 +T Q ++A+++ F +GPAGTGKTY+ A + K+I +I++TRP V G+ Sbjct: 181 RTDKQKDLIDALKTSRQVFILGPAGTGKTYVTATYASDLYTTKEIDKIVITRPHVAVGKE 240 Query: 32351 LGFLPGTLNDKVDPYLRPLYDALGDMLGADQLKRYMDDGSIEVAPLAYMRGRTLNDAFVI 32530 LGFL G L +K P+ P+ D L LG ++ + +G+IE+APLA MRGR+ ++AF+I Sbjct: 241 LGFLKGDLTEKTMPWALPVLDVLEKHLGKGAVETGIKNGNIEMAPLALMRGRSFDNAFII 300 Query: 32531 LDEAQNTTEQQMKMFLTRLGFNTTMVITGDISQVDLTVPRSGLATIERILGGIN-DIAFV 32707 +DE QN + ++KM LTR+G TT+V+ GD Q DL GL+ + + + + Sbjct: 301 VDETQNISTHELKMLLTRVGEGTTIVLNGDAQQSDLK-EADGLSKVIHLAKKHQLPVPII 359 Query: 32708 HLKTEDVVRHQLVGQIVAAY 32767 +D+VR + V + Sbjct: 360 EFGVDDIVRSDITAMWVRTF 379 >ref|NP_839905.1|putative methylase Length = 185 Score = 127 bits (319), Expect = 7e-28 Identities = 79/186 (42%), Positives = 114/186 (61%), Gaps = 7/186 (3%) Frame = +1 Query: 281653 IRIADLFAGIGGIRMGMVQALGDAAHVVYSSEWNKYSVQTYEANWHDENPVA-GDITKVD 281829 ++ DLFAGIGG R+G+ QA V E +K++ Q+Y+A + E DIT V Sbjct: 1 MKFLDLFAGIGGFRLGLEQA---GHECVGFCEIDKFARQSYKAIHNTEGEREYHDITTVS 57 Query: 281830 EHDVPD----IDLLLAGFPCQPFSIAGVSKKQSMGRPTGFEDKTQGTLFFDVARIIKAKQ 281997 + ++L+ GFPCQ FSIAG K GF D+T+GTLFF++AR + + Sbjct: 58 NEEWRTLRGTVELICGGFPCQAFSIAGKRK--------GFLDETRGTLFFEIARAAEQIK 109 Query: 281998 PKAFLLENVKNLLSHDRGRTFKTIYSVLTEDLGYHVTYKLIDAAGF-VPQHRERTYIVG- 282171 P+ LENV+ LLSHD+GRTF+TI S L ++LGY ++++++ F VPQ+RER +I+G Sbjct: 110 PRTLFLENVRGLLSHDKGRTFRTIISTL-DELGYDAEWQILNSKNFGVPQNRERVFIIGH 168 Query: 282172 FREENG 282189 R E G Sbjct: 169 LRGERG 174 >ref|NP_061653.1|transposase Length = 328 Score = 126 bits (317), Expect = 1e-27 Identities = 67/160 (41%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Frame = +3 Query: 75666 EIEDRAVPGHWEGDLITGSRNKS--AIGTLVERTTRFTILLHLPDGHDAEHVQQAIIDKM 75839 EI+ R GHWE D I SR KS I T ER +R+ + +PD + ++ AI + + Sbjct: 166 EIKKRNTFGHWEADTIVSSRGKSKGCIATFAERKSRYYYCVLMPD-RSSNSMETAINNLI 224 Query: 75840 QHLPKLLRNSLTWDQGAELALHKRIGASLDMAVYFCDPHSPWQRGTNENTNGLLRQYFPK 76019 +HLPK ++T D+G E + ++ I ++ VYF DP+S WQRGTNENTNGLLR++FPK Sbjct: 225 KHLPKGAVKTITVDRGKEFSCYQNIENQFNINVYFADPYSAWQRGTNENTNGLLREFFPK 284 Query: 76020 GTDLSVYPEDYLDAVAEELNDRPRKTLGFMKPSEKIIELL 76139 TDL+ ++ L+ + +N RPRK L + P E + + L Sbjct: 285 KTDLAKVNQEQLNYALDSINYRPRKCLNWKFPYEVLCDEL 324 Score = 98.6 bits (244), Expect = 3e-19 Identities = 49/118 (41%), Positives = 76/118 (64%) Frame = +1 Query: 125389 LPDGHDAEHVQQAIIDKMQHLPKLLRNSLTWDQGAELALHKRIGASLDMAVYFCDPHSPW 125568 +PD + ++ AI + ++HLPK ++T D+G E + ++ I ++ VYF DP+S W Sbjct: 208 MPD-RSSNSMETAINNLIKHLPKGAVKTITVDRGKEFSCYQNIENQFNINVYFADPYSAW 266 Query: 125569 QRGTNENTNGLLRQYFPKGTDLSVYPEDYLDAVAEELNDRPRKTLGFMKPSEKIIELL 125742 QRGTNENTNGLLR++FPK TDL+ ++ L+ + +N RPRK L + P E + + L Sbjct: 267 QRGTNENTNGLLREFFPKKTDLAKVNQEQLNYALDSINYRPRKCLNWKFPYEVLCDEL 324 >ref|YP_006926.1|putative PhoH-like protein Length = 250 Score = 125 bits (314), Expect = 3e-27 Identities = 70/190 (36%), Positives = 111/190 (58%), Gaps = 2/190 (1%) Frame = +2 Query: 32171 KTAGQVAYVNAIESHTITFGIGPAGTGKTYLAVAKAVRAFQD--KQIRRIILTRPAVEAG 32344 K Q +Y+N I+++T+T GIG GTGKT++ A + D I ++IL RP G Sbjct: 45 KNREQKSYINMIKNNTVTVGIGEPGTGKTFIPSVLAAQELVDIHSDIEQVILVRPNEPLG 104 Query: 32345 ESLGFLPGTLNDKVDPYLRPLYDALGDMLGADQLKRYMDDGSIEVAPLAYMRGRTLNDAF 32524 +SLG LPG L +K++P+L P+ D + +G K Y++ I+ + + RGRT N+++ Sbjct: 105 KSLGMLPGDLAEKLEPWLEPIADGMKWAIGDHAYKGYVERQKIKFLAIEHARGRTFNNSY 164 Query: 32525 VILDEAQNTTEQQMKMFLTRLGFNTTMVITGDISQVDLTVPRSGLATIERILGGINDIAF 32704 VI+DEAQN + + M LTR+G + ++I GDI+Q D+ SGLA + + + F Sbjct: 165 VIVDEAQNISVEAMVCLLTRVGQDCRLIICGDIAQKDIK-GDSGLALLMEVYEKYENAPF 223 Query: 32705 VHLKTEDVVR 32734 ++ D VR Sbjct: 224 SMIELIDNVR 233 >ref|NP_150145.1|putative DNA methylase Length = 385 Score = 119 bits (299), Expect = 1e-25 Identities = 74/178 (41%), Positives = 108/178 (60%), Gaps = 5/178 (2%) Frame = +1 Query: 281653 IRIADLFAGIGGIRMGMVQALGDAAHVVYSSEWNKYSVQTYEANWHDENPVA-GDITKVD 281829 ++ DLFAGIGG R+GM A + E +K++ +Y+A + + DIT V Sbjct: 1 MKFLDLFAGIGGFRIGMESA---GHECIGFCEIDKFARASYKAIHDTKGEIELHDITTVS 57 Query: 281830 EHDVPDI---DLLLAGFPCQPFSIAGVSKKQSMGRPTGFEDKTQGTLFFDVARIIKAKQP 282000 + + I D++ GFPCQ FSIAG + GFED T+GTLFF++AR +P Sbjct: 58 DDTIRGIGHVDVICGGFPCQAFSIAGNRR--------GFED-TRGTLFFEIARFASILKP 108 Query: 282001 KAFLLENVKNLLSHDRGRTFKTIYSVLTEDLGYHVTYKLIDAAGF-VPQHRERTYIVG 282171 + LENVK LL+HDRG TF+ I S L ++LGY V ++++++ F VPQ+RER +I+G Sbjct: 109 RYLFLENVKGLLNHDRGNTFEVILSAL-DELGYDVEWQVLNSKNFGVPQNRERVFIIG 165 Score = 48.1 bits (113), Expect = 5e-04 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 11/90 (12%) Frame = +1 Query: 282358 VDAATDHTRTLSARYGKDGSEILVSRGEGKNP-------RRLTPRECARLMGYP----DS 282504 V+ + +++T R GK + L++ GE + R+LTPREC RL G+P D Sbjct: 294 VNLSHPNSKTRRGRVGKQIANTLLT-GESQGVVEPDFRIRKLTPRECWRLQGFPDWAFDK 352 Query: 282505 FSIPVSDTQAYRQFGNSVAVPVIRAIGEAM 282594 S++Q Y+Q GNSV V VI AI + + Sbjct: 353 AQEVNSNSQLYKQAGNSVTVNVISAIAQGL 382 >ref|NP_899539.1|PhoH domain protein Length = 235 Score = 117 bits (292), Expect = 9e-25 Identities = 64/184 (34%), Positives = 102/184 (55%), Gaps = 9/184 (4%) Frame = +2 Query: 32210 SHTITFGIGPAGTGKTYLAVAKAVRAFQDKQIRRIILTRPAVEAGESLGFLPGTLNDKVD 32389 S F IG AGTGKT+LA + I+ +P + GE LG+LPGTL +K++ Sbjct: 38 SGAFVFAIGSAGTGKTWLATTLGADMYSAFDYTEFIILKPTLSCGEELGYLPGTLEEKME 97 Query: 32390 PYLRPLYDALGDMLGADQLKRYMDDGSIEVAPLAYMRGRTLNDAFVILDEAQNTTEQQMK 32569 P+++ + L D LGAD+ K + I P+ ++RG+T ++ F+++DEAQN T+ +++ Sbjct: 98 PWIQTVTQPLKDRLGADKFKCDWNK-RIHAEPIQFVRGKTFDNCFIVVDEAQNLTKTEIQ 156 Query: 32570 MFLTRLGFNTTMVITGDISQVD-LTVPRSGLATIERILGGIND--------IAFVHLKTE 32722 +TR+G NT MV GD+ Q D + R+G I + +N+ I + + Sbjct: 157 TIMTRIGENTKMVFCGDLKQDDHKMIYRTGQKEISGLAWMVNEIRNQQRSGIEIIEFTNK 216 Query: 32723 DVVR 32734 DVVR Sbjct: 217 DVVR 220 >ref|YP_024521.1|putative DNA repair protein Length = 418 Score = 115 bits (289), Expect = 2e-24 Identities = 96/326 (29%), Positives = 152/326 (46%), Gaps = 38/326 (11%) Frame = -1 Query: 356917 VIPTGSLALDMALGIGGLPKGRIVEIYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHA 356738 VIPT D LG GG+P GR+ E+YG SGK+T A+H+ A + G + +ID E Sbjct: 40 VIPTMVPQYDYILG-GGIPLGRLTEVYGLTGSGKSTFAVHLSRIATQLGVITIWIDIEGT 98 Query: 356737 LDPAYARKLGVDTDSLIVSQPDNG----------EQALEIADMLIRS------GALDVIV 356606 D +LGVD L Q G EQ + + I + G V + Sbjct: 99 ADNNRMEQLGVDVSKLFSIQSGEGRLKNTVELSVEQVGKELEYWIDTFNEKIPGVPIVFI 158 Query: 356605 IDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGV- 356429 DS+ A + EI+G + + +GL+A + + +T L T I INQ R+ + Sbjct: 159 WDSLGATRTQKEIDGGIDEKQMGLKASATQKVINAVTPKLNDTNTGLIVINQARDDMNAG 218 Query: 356428 FFGNPETTTGGKALKFYASVRLDIRRIQTLK------NGDEAVGNRTRVKVVKNKMAPPF 356267 +G+P +TGG+A + AS+R+ + + LK DE G+ R++ K+K++ P Sbjct: 219 MYGDPIKSTGGRAFEHSASLRIKVHKASQLKQKSELTGKDEYHGHIMRIETKKSKLSRPG 278 Query: 356266 KSAEFDMLYG------------EGISREGSVIDMAQQVGVVKKSGSWFTY---EGDQLGQ 356132 + AE D+L GI E +V A + G++ K G+W Y G+++ Sbjct: 279 QKAEADLLSDYMVGKEDDPILLNGIDLEHTVYKEAVERGLITK-GAWRNYVTLNGEEIKL 337 Query: 356131 GREKVRQFLKDNPAITEEIENKVKAE 356054 + LKDN + E+ ++V E Sbjct: 338 RDAEWVPVLKDNKELYLELFSRVYGE 363 >ref|NP_818252.1|gp201 Length = 362 Score = 115 bits (289), Expect = 2e-24 Identities = 91/331 (27%), Positives = 164/331 (49%), Gaps = 19/331 (5%) Frame = -1 Query: 356992 LAQVEKSFGKGSAMRLGDQPEQNVEVIPTGSLALDMALGIGGLPKGRIVEIYGPESSGKT 356813 L+ V+ +G+ + M D + +G+LALD A+G+GGLP R++EI G E +GKT Sbjct: 11 LSDVQNKYGENAVMMAKDMV--TYPPVRSGTLALDFAIGVGGLPSDRVIEIGGTEGTGKT 68 Query: 356812 TLALHVVAN--AQKKGGVAAYIDAEHALDPAYARKLGVD---TDSLIVSQPDNGEQALEI 356648 TL+L + + A +D EH + +A +L + D +I +QPD+ EQA + Sbjct: 69 TLSLLAMQQFLLAQPERFALVLDLEHKMTKDWAVQLVGEELWDDRVIYAQPDHVEQATNM 128 Query: 356647 ADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTT 356468 L+ SG + + DS+ +A IE E VG A +++ R + A+ Sbjct: 129 YSDLVGSGQICFALFDSIGGAAVRAGIEKEAEKVQVGGNANAITKFARLASNFSAKYRCL 188 Query: 356467 AIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIR-----RIQTLKNGDE-AVGNRT 356306 + NQ E++ + T GG K +R+ ++ +++T+ NG++ VG + Sbjct: 189 TVGTNQ--ERVDMEGFRRYMTPGGNGWKHACILRIRLKASTQDKVETVVNGEKMVVGRKI 246 Query: 356305 RVKVVKNKMAPPFKSAEFDML------YGEGISREGSVIDMAQQVGVVKKSGSWFTYEGD 356144 ++VKN++A P +SA + M YG GI ++ +A GV+K+ S++ + Sbjct: 247 HAQIVKNQLAAPGRSAWWWMYHVPTEEYGFGIDTLDEIVRLAILTGVIKQRVSYYDHPAL 306 Query: 356143 QLG--QGREKVRQFLKDNPAITEEIENKVKA 356057 + G +G + + + D+ A+ I ++ A Sbjct: 307 ENGTVKGMTSLSKAIGDDEALRNTIVSETLA 337 >ref|NP_899293.1|topoisomerase II large subunit Length = 597 Score = 109 bits (272), Expect = 2e-22 Identities = 98/375 (26%), Positives = 169/375 (45%), Gaps = 4/375 (1%) Frame = -1 Query: 339256 SFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKLKVNMKDSAMKVERDDIQAGL-VA 339080 SF+N V T GGTHVD F N + ++ ++ RK K+N V + ++ GL + Sbjct: 263 SFINGVHTINGGTHVDYFSNKLADELIPMIK---RKHKIN-------VPKPQLKNGLTIG 312 Query: 339079 VVTARVAEPQFQGQTKDVLGTAQ--VKPIVTRLTDKQFGEMITGSKRGYKEQSGRVLEKI 338906 + +P+F QTK+ L ++Q V P + ++ + + I ++ I Sbjct: 313 LFIRNFVDPKFDSQTKERLTSSQGDVSPYLKDISYDKIAKKILADDD--------IIMPI 364 Query: 338905 VGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELFIVEGDSALGTAKAA 338726 + + A+ + +A+E+ R++ ++A + + PG LF+ EG SA+G Sbjct: 365 IEALLAKQHAAEARELARKQKKAQNAKVVDHIKATMPGGT----LFLTEGKSAIGYLIKV 420 Query: 338725 RNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQSFDIEQSRYHKIIMM 338546 R++ +P+RGK+L+ +++ NKE I+ V+ G DI YH I ++ Sbjct: 421 RDSKKHGGIPLRGKVLSTWGKRPAKIMENKELCDIMSVLNIQLGND-DIRDMYYHDIGIL 479 Query: 338545 TDADVDG-AHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALTGSHKGEYIYTYSDDE 338369 DADVDG I LLL FY + + + P + ++K E + YS DE Sbjct: 480 VDADVDGKGSIFPLLLAFFYNWPELYKQKRIKFVRTP-----VVIATNKKETKWFYSIDE 534 Query: 338368 LAGKLADLDKKRIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRMEDAAQASEIF 338189 K ++ I+ KGLG + + +P + I ++D + F Sbjct: 535 YR-------KAKLSKTWKIRYIKGLGSLTEKEYKKVINEP---VFDEIVIDDPS----CF 580 Query: 338188 SLLMGDDVPPRKQFI 338144 LL GDD RK ++ Sbjct: 581 ELLFGDDTDKRKDWM 595 Score = 54.3 bits (129), Expect = 7e-06 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 24/116 (20%) Frame = -1 Query: 340339 VLEGLDAVRKRPGMYIGTTDSQ-----------------GLMHCLWEIIDNSVDEALAG- 340214 +L V KRPGMYIG+ D + GL+ + E+IDNS+DEA+ Sbjct: 9 ILSDKQHVLKRPGMYIGSVDREAHERFVLGEYKQIEYVPGLVKIINEVIDNSLDEAIRTK 68 Query: 340213 --FCNDIVVTLHTDGS-VEVADNGRGIPVDK--EPK-TGLSGVEVVLTKLHAGAKF 340064 F N V+ + +G+ + +ADNGRGIP DK +P L E T+ AG+ F Sbjct: 69 FKFAN--VIEVKVEGNRITIADNGRGIPQDKVIDPHGNELLRPEAAWTRTKAGSNF 122 >ref|NP_046694.1|modification methylase Length = 443 Score = 102 bits (254), Expect = 2e-20 Identities = 68/206 (33%), Positives = 110/206 (53%), Gaps = 26/206 (12%) Frame = +1 Query: 281644 MSEIRIADLFAGIGGIRMGMVQALGDAAHVVYSSEWNKYSVQTYEANWH-DENPVAGDIT 281820 MS++R+ LF+GIG + + +G ++ SE +KY++++Y A + E GDI+ Sbjct: 1 MSKLRVMSLFSGIGAFEAAL-RNIGVDYELIGFSEIDKYAIKSYCAIHNVSETLNVGDIS 59 Query: 281821 KVDEHDVPDIDLLLAGFPCQPFSIAG-------VSKKQSMGRPTGFED------------ 281943 K + ++P DLL +GFPC FS+AG S +ED Sbjct: 60 KAKKDNIPYFDLLTSGFPCPTFSVAGGRDGMEYKCSNCSHEHLITYEDYKKGVKCPKCEA 119 Query: 281944 -----KTQGTLFFDVARIIKAKQPKAFLLENVKNLLSHDRGRTFKTIYSVLTEDLGYHVT 282108 +GTLFF+ A + + K+PK +LENVK L++ G+ + I S ++GY + Sbjct: 120 VSKAKDERGTLFFETALLAEEKKPKFVILENVKGLINSGNGQVLR-IISETMNNIGYRID 178 Query: 282109 YKLIDAAGF-VPQHRERTYIVGFREE 282183 +L+++ F VPQ+RER YI+G RE+ Sbjct: 179 LELLNSKFFNVPQNRERVYIIGIRED 204 Score = 40.0 bits (92), Expect = 0.14 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 5/48 (10%) Frame = +1 Query: 282454 RRLTPRECARLMGYPD-----SFSIPVSDTQAYRQFGNSVAVPVIRAI 282582 R+L+P EC RL + D +F+ +S++Q Y+Q GNS+ V V+ +I Sbjct: 382 RKLSPLECWRLQAFDDEDFEKAFAAGISNSQLYKQAGNSITVSVLESI 429 >ref|NP_932362.1|topoisomerase II large subunit Length = 607 Score = 100 bits (250), Expect = 7e-20 Identities = 92/382 (24%), Positives = 172/382 (45%), Gaps = 10/382 (2%) Frame = -1 Query: 339259 MSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKLKVNMKDSAMKVERDDIQAGLVA 339080 +S+VN + GG+H+D ++ I++++ A++ +K K+ + + +K + + Sbjct: 264 VSYVNGLNIKNGGSHIDYLVDGISEELMPAIK---KKHKIEISKARVK------ECLTMV 314 Query: 339079 VVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGEMITGSKRGYKEQSGRVLEKIVG 338900 VV ++ +F QTK+ RLT+ GE+ + +K+ S +++ Sbjct: 315 VVVRGMSNLRFDSQTKE------------RLTNPA-GEVKSHFDLDFKKLSKQIMNTDA- 360 Query: 338899 EMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPG--------NDDVAELFIVEGDSAL 338744 + I++ A+ + K A+ A A ++C ND LF+ EG+SA+ Sbjct: 361 ILQPIIEAALARHLAAEKAAMTKAQKAAAKTNCAKHIKAGEWGRNDIETTLFLTEGESAI 420 Query: 338743 GTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQSFDIEQSRY 338564 G ++ +RGK++N + +L N E + I + G DI Q +Y Sbjct: 421 GYLLKVKDENLHGGYALRGKVMNTWGMKGSDVLKNNELSDICAITGLDLANPDDISQRKY 480 Query: 338563 HKIIMMTDADVDG-AHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALTGSHKGEYIY 338387 I +MTDAD DG I LL F R+ + L + G V P+ + L ++ Y Sbjct: 481 KNIAIMTDADPDGQGSIYPCLLAFFARWPK-LFDEGSVRFVKTPV--VILNKGKNTKWFY 537 Query: 338386 TYSDDELAGKLADLDKKRIGYND-DIQRYKGLGEMDADQLADTTMDPRTRMLRRIRMEDA 338210 T L + +K++ Y D++ KGLG + + +D +P + ++ Sbjct: 538 T---------LTEFEKEKKDYKGWDLRYIKGLGSLREHEYSDVVNNPNYDI-----VDLG 583 Query: 338209 AQASEIFSLLMGDDVPPRKQFI 338144 E+F +L+GDD RK+++ Sbjct: 584 DDWEELFEMLLGDDAALRKEWM 605 Score = 44.7 bits (104), Expect = 0.006 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 23/122 (18%) Frame = -1 Query: 340348 DLAVLEGLDAVRKRPGMYIGTTDSQ-----------------GLMHCLWEIIDNSVDEAL 340220 + VL + V RP MY+G+ + GL+ + EIIDNSVDE + Sbjct: 4 EFKVLTPREHVILRPNMYVGSVAYEPHERFLFGKFQSVSYVPGLVKIIDEIIDNSVDEGI 63 Query: 340219 AG---FCNDIVVTLHT-DGSVEVADNGRGIP--VDKEPKTGLSGVEVVLTKLHAGAKFGN 340058 F N I + +GSV V DNGRGIP + + P + T+ AG+ F + Sbjct: 64 RTDFKFANKIDIRFDLLEGSVTVVDNGRGIPQSMVETPDGEMPKPVAAWTQTMAGSNFDD 123 Query: 340057 SS 340052 ++ Sbjct: 124 TN 125 >ref|YP_164688.1|recombinase A Length = 405 Score = 100 bits (248), Expect = 1e-19 Identities = 90/284 (31%), Positives = 133/284 (46%), Gaps = 25/284 (8%) Frame = -1 Query: 356920 EVIPTGSLALDMALGIGGLPK-GRIVEIYGPESSGKTTLALHVVANAQKKGGVAAYIDAE 356744 + IPT ALD L + G+P GR+ E++G SSGK+TL V+ NA K + Y D E Sbjct: 32 DYIPTLIPALDKNL-VSGIPSSGRVTEVFGLPSSGKSTLMGLVMKNALKMNVIPIYFDVE 90 Query: 356743 HALDPAYARKLGVDTDSLIVSQP----DNGEQAL---EIADMLIRSGA---------LDV 356612 +D LGVD +I P DN L EI + ++ A + Sbjct: 91 ETMDSERLEGLGVDPSKVITVTPEINKDNTVTPLYIEEITNYIVNMAAKIHSQSSELTSM 150 Query: 356611 IVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIG 356432 +IDSV K E + + VG QA+ ++ RK+ L+ I +NQ R+ + Sbjct: 151 FIIDSVGFTQSKLEANTDSESATVGQQAKALAIMARKVQANLSYNNGMLIGLNQGRDDMK 210 Query: 356431 VFFGNPE----TTTGGKALKFYASVRLDIRRIQTLK--NGDE-AVGNRTRVKVVKNKMAP 356273 NP+ + GGK + + S RL I++ +K N D+ AVG T+V VVK+K+ Sbjct: 211 A--PNPKYAQTKSLGGKGWEHFTSSRLRIQKTTAIKMHNSDKNAVGFDTKVTVVKSKVGD 268 Query: 356272 PFKSA-EFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGD 356144 A +L G RE ++ G++K SG W+TY D Sbjct: 269 NVTDAVTIKLLGARGFDRETNIFYGGVDEGIIKGSG-WYTYVND 311 >ref|NP_943883.1|topoisomerase II large subunit Length = 613 Score = 100 bits (248), Expect = 1e-19 Identities = 96/390 (24%), Positives = 177/390 (45%), Gaps = 4/390 (1%) Frame = -1 Query: 339301 DIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKLKVNMKDSA 339122 +++L + + +SFVN V T GG HV G +++++ ++ ++ R+ K+ + + Sbjct: 246 NVSLFFATSEEYRQLSFVNGVHTKQGGNHVYGVLDSLSDELIPMIK---RQHKIEINKAR 302 Query: 339121 MKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGT--AQVKPIVTRLTDKQFGEMITGSK 338948 +K + L+ + + P++ GQTK+ L + AQ++ + L K I Sbjct: 303 IK------ECLLIGLFIRNLVAPKYDGQTKERLSSPWAQIRDHMN-LDYKALARKIL--- 352 Query: 338947 RGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELF 338768 ++ V++ I+ A+ ++ T+ + + A++ ++ G LF Sbjct: 353 -----KTPEVIDPIIASALAKKEAADKAAATKAQKKAKKANVAKHVAAAGLGRLKTM-LF 406 Query: 338767 IVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQS 338588 + EGDSA+G RN Q P+RGK+LNV ++L NKE A ++ ++ + Sbjct: 407 LAEGDSAIGPFTRFRNEETQGSYPLRGKMLNVWNLPDHEVLKNKEIADLLGILNV---EL 463 Query: 338587 FDIEQSRYHKIIMMTDADVDG-AHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALTG 338411 E Y I +MTDAD DG I +L + FY++ E G ++ P + I+ G Sbjct: 464 RSKEAPAYTDIAIMTDADQDGKGSIAMLAIAFFYKFWPHWFEQGRIHIVRTPEY-ISTNG 522 Query: 338410 SHKGEYIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGEMDAD-QLADTTMDPRTRML 338234 ++YS DE K D + KGLG + + + +L Sbjct: 523 KKTD---WSYSRDEFRSKKFDGKWTH-------RHIKGLGSLTVEGDDCEYKQCIENLVL 572 Query: 338233 RRIRMEDAAQASEIFSLLMGDDVPPRKQFI 338144 ++ ++D Q E+ +L GDD RKQ++ Sbjct: 573 EQVVIDD--QTPELLEMLFGDDEHKRKQWL 600 Score = 41.2 bits (95), Expect = 0.063 Identities = 37/104 (35%), Positives = 48/104 (46%), Gaps = 25/104 (24%) Frame = -1 Query: 340300 MYIGTTDSQ-----------------GLMHCLWEIIDNSVDEALA---GFCNDIVVTLHT 340181 MYIG+T ++ GL+ E+IDNSVDEA+ N I V + Sbjct: 20 MYIGSTSTETHDVLVDGKFVQIAYVPGLVKITDEVIDNSVDEAIRTNFEHANQIEVVI-K 78 Query: 340180 DGSVEVADNGRGIPVDKEPKTGLSGVEVVL-----TKLHAGAKF 340064 D V V DNGRG+P + GVEV L T+ AG+ F Sbjct: 79 DNQVSVKDNGRGLP--QGMVVTPEGVEVPLPLAAWTRARAGSNF 120 >ref|NP_061524.1|Orf28 Length = 687 Score = 97.4 bits (241), Expect = 7e-19 Identities = 86/329 (26%), Positives = 142/329 (43%), Gaps = 5/329 (1%) Frame = -3 Query: 5828 IDGLRALAILGVIAFHTRPSLLQGGFIGVTMFFVITGFLATRSVLNMVDRTGSFGYGRYL 5649 IDGLRAL+IL V+ +H ++ GGF+GV +FFVI+GFL +++ + + F +G + Sbjct: 19 IDGLRALSILAVVLYHAGVPMVYGGFVGVDIFFVISGFLIVTHIVSSI-QDDRFLFGEFW 77 Query: 5648 IRRITRLWP----VMLATIAVVPWLTWMFAPSLLQKVVSDSLPDALFASNWVYIFRKVPY 5481 RR R+ P V+ A+ P++ + P + + + AL N Y + Y Sbjct: 78 ARRALRILPPYLLVLFVCSAIAPFI--LVLPREINEFGDQVIYSALMLVNH-YFLGQQGY 134 Query: 5480 FEAAGLPSPLTHLWFLGVTMQFYLVWPLLMVVLGKITKSKWVRSMAILVIMAASTADMVL 5301 F+ PL HLW L V QFY+V P+++ +L T R +++ + + V Sbjct: 135 FDGLSETKPLLHLWSLSVEEQFYIVAPVVIFLLYVSTSRLGQRKASVISVFSVLCVFAVS 194 Query: 5300 LFDPANTSRVYYGTDTRXXXXXXXXXXAIWIAPSSRGTEAAEAGAASQTVQIERQAGDKT 5121 L+ S G + + ++ P R E GA + V ++ G Sbjct: 195 LYGCIALSGDGAGKN-----------YSFFLMP-LRAWEFIAGGAIAFAVPFAQRLG--- 239 Query: 5120 GARLTIVCNVXXXXXXXXXXXGFWFANGYLSYMYQGGYLITAFISLCALACAVNNDSI-* 4944 + + +F NG Y G L+ + + C V+N I Sbjct: 240 ----RLALEIIAIAGVVMLFYAIFFFNGKSPYP-AGKALVPVIGAALIILCGVSNHKILV 294 Query: 4943 SHVLGCAPLRYIGSRSFSLYVMHYPLLQF 4857 S +L IG S++ Y+ H+PLL F Sbjct: 295 SRILSFRVFVMIGLVSYAWYLWHWPLLTF 323 >ref|NP_861694.1|gp60plus39 large subunit topoisomerase II Length = 606 Score = 89.4 bits (220), Expect = 2e-16 Identities = 92/375 (24%), Positives = 163/375 (43%), Gaps = 3/375 (0%) Frame = -1 Query: 339259 MSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKLKVNMKDSAMKVERDDIQAGLVA 339080 +++VN + T GG HV+ M+ I + + ++ K ++V + ++ L Sbjct: 266 LTYVNNIHTKNGGHHVECVMDDICEHLLPGIKK---------KYKGIEVTKARVKECLTM 316 Query: 339079 VVTAR-VAEPQFQGQTKDVLGTA--QVKPIVTRLTDKQFGEMITGSKRGYKEQSGRVLEK 338909 ++ R ++ +F QTK+ L + ++ + +L K+ + + + ++ Sbjct: 317 LMFIRDMSNMRFDSQTKERLTSTYGDIRNHI-QLDAKKIAQALL-------KNEALIMPI 368 Query: 338908 IVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELFIVEGDSALGTAKA 338729 + + ++ + KA E K A + A + + Q G D LF+ EGDSA+G Sbjct: 369 VEAALARKLAAEKAAETKAAKKATK-AKVHKHIKANQCGKDADTTLFLTEGDSAIGYLID 427 Query: 338728 ARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQSFDIEQSRYHKIIM 338549 R+ P+RGK++N S M+ NKE I + G G+ E + Y I + Sbjct: 428 VRDRELHGGFPLRGKVMNSWGMSYADMMKNKELFDICAITGLILGEK--AENTNYRNIAI 485 Query: 338548 MTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALTGSHKGEYIYTYSDDE 338369 MTDAD DG L F+ L E G + P+ IA G + ++ YT ++ E Sbjct: 486 MTDADHDGLGSIYPALLAFFSNWPELFEQGRIRFVKTPV-IIAQIGKTQ-KWFYTVAEYE 543 Query: 338368 LAGKLADLDKKRIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRMEDAAQASEIF 338189 A L K I Y KGLG ++ + +P +++ E+F Sbjct: 544 EAKD--TLPKHSIRY------IKGLGSLEKSEYRKMIQNPVYDVVKL-----PENWKELF 590 Query: 338188 SLLMGDDVPPRKQFI 338144 +LMGDD RK+++ Sbjct: 591 EMLMGDDSELRKEWM 605 Score = 43.9 bits (102), Expect = 0.010 Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 6/80 (7%) Frame = -1 Query: 340273 GLMHCLWEIIDNSVDEALA---GFCNDIVVTLHTDGSVEVADNGRGIP---VDKEPKTGL 340112 GL+ + EIIDNSVDEA+ F N I V + + V V DNGRGIP V + + Sbjct: 48 GLVKLIDEIIDNSVDEAIRTSFKFANKIDVQI-KNNQVSVEDNGRGIPQGLVTDQTGEQI 106 Query: 340111 SGVEVVLTKLHAGAKFGNSS 340052 G T AG FG+ S Sbjct: 107 PGPVAAWTIPKAGGNFGDDS 126 >ref|NP_891577.1|topoisomerase II large subunit Length = 607 Score = 89.0 bits (219), Expect = 3e-16 Identities = 101/385 (26%), Positives = 168/385 (43%), Gaps = 8/385 (2%) Frame = -1 Query: 339283 VNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKLKVNMKDSAMKVERD 339104 V G +SF N + T GGTHVD + + ++I K ++ ++ KV++ +A+K Sbjct: 256 VEGEGFKSVSFANGLFTKNGGTHVDYVTDDLCEEIVKRIK---KEYKVDVTKAAVK---- 308 Query: 339103 DIQAGLVAVVTAR-VAEPQFQGQTKDVLG--TAQVKPIVTRLTDKQFGEMITGSKRGYKE 338933 +GL ++ R + +F QTK+ L T +K + L K+ ++I + Sbjct: 309 ---SGLTCILIVRELPNLRFDSQTKERLTNPTGDIKRHID-LDFKKLAKVIAKKEN---- 360 Query: 338932 QSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELFIVEGD 338753 ++ I+ + AR ++ T+ A + A + + G D LF+ EGD Sbjct: 361 ----IIMPIIAVVLARKEAADKAAATKAAKAAKRAKVAKHVKANLIGTDAETTLFLTEGD 416 Query: 338752 SALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSG-QSFDIE 338576 SA+ + R+ P+RGK L + +++ N E I+ + G G + D+ Sbjct: 417 SAINYLISVRDQDLHGGFPLRGKTLTTWEQPEAKIVKNAEIFNIMAITGLQFGVDALDVM 476 Query: 338575 QSRYHKIIMMTDADVDG-AHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALTGSHKG 338399 Q Y I +MTDAD DG I+ L++ F R+ L E G + P I + KG Sbjct: 477 Q--YKNIAIMTDADTDGIGSIKPSLISFFARWPE-LFEDGRIRFIKTP---IIIAEPKKG 530 Query: 338398 EYIYTYSDDELAGKLADLDKKR---IGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 338228 + + Y D L D + R GYN I+ KGL + DP ++ Sbjct: 531 DDVRWYYD------LEDFENDRDNIKGYN--IRYIKGLASLTESDYHRVINDP---VMEI 579 Query: 338227 IRMEDAAQASEIFSLLMGDDVPPRK 338153 I + + E+F LL +D RK Sbjct: 580 ITLPE--NYKELFDLLYSEDADQRK 602 Score = 48.9 bits (115), Expect = 3e-04 Identities = 41/122 (33%), Positives = 57/122 (46%), Gaps = 23/122 (18%) Frame = -1 Query: 340348 DLAVLEGLDAVRKRPGMYIGTTDSQ-----------------GLMHCLWEIIDNSVDEAL 340220 + +L + V KR GMYIG+T + GL+ + EIIDNSVDEA+ Sbjct: 3 EFRILSDREHVLKRAGMYIGSTTYEEHQRFLFGKWTKISYVPGLVKIIDEIIDNSVDEAI 62 Query: 340219 A---GFCNDIVVTLHTDGSVEVADNGRGIP---VDKEPKTGLSGVEVVLTKLHAGAKFGN 340058 F N I V + + V V DNGRGIP V T + T+ AG+ F + Sbjct: 63 RTNFEFANVISVDIQ-NNIVTVTDNGRGIPQHMVTTPEGTQIPQPVAAWTRTKAGSNFDD 121 Query: 340057 SS 340052 ++ Sbjct: 122 TN 123 >ref|NP_878240.1|Mth Length = 312 Score = 85.9 bits (211), Expect = 2e-15 Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 12/233 (5%) Frame = +1 Query: 281659 IADLFAGIGGIRMGMVQALGDAAHVVYSSEWNKYSVQTYEANWHDENPVAGDITKVDEHD 281838 + LF+G GG G++ A +V+ +++ Y+ Y N + + + GDI+ + Sbjct: 4 VVSLFSGCGGSDAGVLNA---GFNVLMANDILPYARDVYLENHPETDYILGDISGLQSF- 59 Query: 281839 VPDIDLLLAGFPCQPFSIAGVSKKQSMGRPTGFEDKTQGTLFFDVARIIKAKQPKAFLLE 282018 P +LL+ +PCQ FS G K D+ TL+ + AR + +PKAF++E Sbjct: 60 -PSAELLIGCYPCQGFSQGGARKA----------DRKINTLYLEFARALSKIKPKAFIVE 108 Query: 282019 NVKNLLSHDRGRTFKTIYSVLTEDLGYHVTYKLIDAAGF-VPQHRERTYIVGFREENGFT 282195 NV ++ + K + V E+ GY V+ ++++A+ + V Q R+R +IVG R++ G T Sbjct: 109 NVSGMVRRNFEHLLKDQFKVF-EEAGYTVSSQILNASHYGVSQDRKRIFIVGIRKDYGIT 167 Query: 282196 FDDVKPIAHGNVGSILLPASQVPD-----------KYVLSDKLWTYLQNYKKK 282321 + KP HG+ L P S + D ++ +D W YL +++ Sbjct: 168 YKFPKP-THGDG---LTPYSTIRDAIGHMPVWPVGEFYDADFHWYYLSRNRRQ 216 >ref|YP_195230.1|PhoH Length = 250 Score = 84.7 bits (208), Expect = 5e-15 Identities = 55/191 (28%), Positives = 97/191 (50%), Gaps = 11/191 (5%) Frame = +2 Query: 32225 FGIGPAGTGKTYLAVAKAVRAFQDKQIR--RIILTRPAVEAGESLGFLPGTLNDKVDPYL 32398 + G AGTGKT++A+ A++ D+ ++ + R V E +GFLPGT DK Y Sbjct: 55 YAYGCAGTGKTFVALYLALKDVLDEYTPYDKVYIVRSLVATRE-IGFLPGTHEDKASLYQ 113 Query: 32399 RPLYDALGDMLGADQ-------LKRYMDDGSIEVAPLAYMRGRTLNDAFVILDEAQNTTE 32557 P + + M + +I +++RG TL+++ +I+DE QN Sbjct: 114 IPYKNMVKSMFEMPDDPSFEMLYENLKQQETISFWSTSFLRGSTLDNSIIIVDECQNLNF 173 Query: 32558 QQMKMFLTRLGFNTTMVITGDISQVDL--TVPRSGLATIERILGGINDIAFVHLKTEDVV 32731 ++ +TR+G ++ ++ GD +Q DL T R+G+ +RI+ +N+ + + ED+V Sbjct: 174 HELDSIMTRVGQDSKIIFCGDANQSDLQKTNERTGILDFQRIIQKMNEFSLIEYGIEDIV 233 Query: 32732 RHQLVGQIVAA 32764 R LV + A Sbjct: 234 RSGLVKSYLIA 244 >ref|NP_818425.1|gp127 Length = 247 Score = 78.6 bits (192), Expect = 4e-13 Identities = 63/182 (34%), Positives = 88/182 (48%), Gaps = 7/182 (3%) Frame = +1 Query: 281665 DLFAGIGGIRMGMVQALGDAAHVVYSSEWNKYSVQTYEANWHDENPVAGDITKVDEHD-- 281838 DLFAGIGG + + +A A V + E +K Q ++ D DI V D Sbjct: 7 DLFAGIGGFSLTLQRA---GAKTVANVEIDKNCRQILARHYPDAVQF-DDIKNVSGDDLR 62 Query: 281839 ----VPDIDLLLAGFPCQPFSIAGVSKKQSMGRPTGFEDKTQGTLFFDVARIIKAKQPKA 282006 VP+ +L GFPCQ S AG R G + G LF+++ R++ PK Sbjct: 63 SVGFVPERGILTGGFPCQDISAAG--------RGAGLAGERSG-LFWEIVRLLNELHPKW 113 Query: 282007 FLLENVKNLLSHDRGRTFKTIYSVLTEDLGYHVTYKLIDAA-GFVPQHRERTYIVGFREE 282183 F+LENV LLS GR T+ L GY + ++++DA VPQ R R +IVG + Sbjct: 114 FILENVPRLLSIHGGRDMGTVVGALAGS-GYGLAWRVLDAQFTGVPQRRRRIFIVGHLGD 172 Query: 282184 NG 282189 +G Sbjct: 173 SG 174 >ref|YP_195169.1|RecA-like recombination protein Length = 343 Score = 78.6 bits (192), Expect = 4e-13 Identities = 73/315 (23%), Positives = 143/315 (45%), Gaps = 20/315 (6%) Frame = -1 Query: 356914 IPTGSLALDMALG---IGGLPKGRIVEIYGPESSGKTTLALHVV---ANAQKKGGVAAYI 356753 + TGS + + GG+P +I + G +GKT L VV N GV Y Sbjct: 32 VDTGSYIFNALVSGSIFGGIPSNKITALAGESGTGKTFFCLSVVRNFLNTDPDAGV-IYF 90 Query: 356752 DAEHALDPAYARKLGVDTDSLIVSQPDNGE----QALEIADMLIRSGALD----VIVIDS 356597 + E A+ G+D+ +I+ D E QA+ I D + + + V+DS Sbjct: 91 ETESAISKQMIESRGIDSTRMIIFPVDTIEDFRTQAVRIIDKYMEQNKSERKPLMFVLDS 150 Query: 356596 VAALVPKAEIEGEMGDSHVG--LQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFF 356423 + L K E+E D V +A+++ A R +T + +A + N + +G + Sbjct: 151 LGMLATKKEVEDASNDKQVRDMTKAQIVKSAFRILTLKMGKANIPMLVTNHTYDVVGSYV 210 Query: 356422 GNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDML 356243 E GG LK+ AS + + + + K+G + VGN + + K+++ E + Sbjct: 211 PTKE-MGGGSGLKYSASTIVYLGK-KKEKDGTDLVGNIIKCEAKKSRLTREGSKVETRLF 268 Query: 356242 YGE-GISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGREKVR---QFLKDNPAITEEI 356075 + + G+ R ++++ ++ G+ K + + G ++ G++ + +F + I +E+ Sbjct: 269 FDQRGLERYYGMLELGERAGLWKNTAGRYEINGKKV-YGKQILANPDEFFTEE--ILQEL 325 Query: 356074 ENKVKAEFGLIGSAD 356030 + + + EF L G++D Sbjct: 326 DKQAQREF-LYGASD 339 >ref|NP_049656.2|UvsX RecA-like recombination protein Length = 391 Score = 77.8 bits (190), Expect = 6e-13 Identities = 69/263 (26%), Positives = 122/263 (46%), Gaps = 8/263 (3%) Frame = -1 Query: 356914 IPTGSLALDMALGIGGLPKGRIVEIYGPESSGKTTLALHVVANAQKK--GGVAAYIDAEH 356741 IP ++AL + GG+ G ++ + GP S K+ L +V++ ++ V + D+E Sbjct: 36 IPMMNIALSGEI-TGGMQSGLLI-LAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 93 Query: 356740 ALDPAYARKLGVDTDSLIVSQPDNGEQ-ALEIADML--IRSGALDVIVIDSVAALVPKAE 356570 + PAY R +GVD + +I + + EQ +++ + L I G V+ IDS+ L K E Sbjct: 94 GITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKE 153 Query: 356569 IEGEMGDSHVG--LQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGG 356396 E + + V +A+ M R +T + I IN E +F +T GG Sbjct: 154 TEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYETQEMF---SKTVMGG 210 Query: 356395 KALKFYASVRLDIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREG 356216 Y++ + I + +K+G + G + + V K++ D+ + GI Sbjct: 211 GTGPMYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYS 270 Query: 356215 SVIDMAQQVG-VVKKSGSWFTYE 356150 ++DMA ++G VVK W+ E Sbjct: 271 GLLDMALELGFVVKPKNGWYARE 293 >ref|NP_612994.1|hypothetical protein Length = 348 Score = 77.0 bits (188), Expect = 1e-12 Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 20/245 (8%) Frame = +1 Query: 344218 EGGMATVYEAVDERLGRTVAIKVMHTQLAKGPHREQFVERFRREANSAASIANPHIVQVY 344397 +G + VY A D L + IK + + H + F EA A+P+IVQV Sbjct: 21 QGCFSKVYLAHDRHLAHDLVIKEIEKK-ENTNHDDYF-----NEARLLYKHAHPNIVQVQ 74 Query: 344398 DTGEFNGLDFLVMEYVHGVNLRHEMNAQGTFSVRETLRVVAETLDGLASAHRAGVVHRDI 344577 + ++ M + H +L M S RE +R + L GL H G++H DI Sbjct: 75 YAAQCESNIYIAMPFYHNGSLNQLMKKNNLTS-REIIRYSIQFLSGLYHIHSKGLMHFDI 133 Query: 344578 KPENILINDRGHVQITDFGLAKAASQATLSSTGMLLGTAAYLAPE--MIENNQATAQGDL 344751 KP NI+I++R ++DFGL++ ++ S G ++ PE + N D+ Sbjct: 134 KPNNIMISNRNEAMLSDFGLSQLVNEE--SRAAPEFGYHFHVPPEYFSLSTNDYNFTYDI 191 Query: 344752 YSVGIMAWEMLTGKVPFDSDN------------------PVTLVFKHVHEDVPSVATVCQ 344877 Y G+ + M G F+ + P+ H+H+ + ++ C Sbjct: 192 YQAGLTIYRMCVGHDNFERERSAFSTIEQLRESIINGCYPLKEYPPHIHKKLITIVNKCI 251 Query: 344878 GIDPS 344892 +DP+ Sbjct: 252 HVDPN 256 >ref|NP_049482.1|serine Length = 348 Score = 77.0 bits (188), Expect = 1e-12 Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 20/245 (8%) Frame = +1 Query: 344218 EGGMATVYEAVDERLGRTVAIKVMHTQLAKGPHREQFVERFRREANSAASIANPHIVQVY 344397 +G + VY A D L + IK + + H + F EA A+P+IVQV Sbjct: 21 QGCFSKVYLAHDRHLAHDLVIKEIEKK-ENTNHDDYF-----NEARLLYKHAHPNIVQVQ 74 Query: 344398 DTGEFNGLDFLVMEYVHGVNLRHEMNAQGTFSVRETLRVVAETLDGLASAHRAGVVHRDI 344577 + ++ M + H +L M S RE +R + L GL H G++H DI Sbjct: 75 YAAQCESNIYIAMPFYHNGSLNQLMKKNNLTS-REIIRYSIQFLSGLYHIHSKGLMHFDI 133 Query: 344578 KPENILINDRGHVQITDFGLAKAASQATLSSTGMLLGTAAYLAPE--MIENNQATAQGDL 344751 KP NI+I++R ++DFGL++ ++ S G ++ PE + N D+ Sbjct: 134 KPNNIMISNRNEAMLSDFGLSQLVNEE--SRAAPEFGYHFHVPPEYFSLSTNDYNFTYDI 191 Query: 344752 YSVGIMAWEMLTGKVPFDSDN------------------PVTLVFKHVHEDVPSVATVCQ 344877 Y G+ + M G F+ + P+ H+H+ + ++ C Sbjct: 192 YQAGLTIYRMCVGHDNFERERSAFSTIEQLRESIINGCYPLKEYPPHIHKKLITIVNKCI 251 Query: 344878 GIDPS 344892 +DP+ Sbjct: 252 HVDPN 256 >ref|NP_958559.1|putative protein Length = 261 Score = 76.6 bits (187), Expect = 1e-12 Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 4/126 (3%) Frame = +1 Query: 85426 DSLIRSYGKWLSDNTTYTQLDE-WYEVNVPLLDEDNDYTQFY-VKPGKNSVTFSDDCATL 85599 D L+ Y W + L + + VP LD +D Y +K NS+T +DD TL Sbjct: 5 DKLLTDYVNWYKKEAKFKDLSQNVIRIEVPFLDSFSDEIVMYAIKNKNNSITLTDDGWTL 64 Query: 85600 RRLESHGMTVTES--RLAVLKDILNQFGIERNGDELTLTSDTADFADAKNRFLQAIIKVG 85773 L+S+G+T++ S R + + LN FGI ELT T + F AKNR LQAI+ V Sbjct: 65 DNLKSNGVTISRSKNRKRIFTNRLNAFGITEKDGELTTTVEYKYFPTAKNRLLQAILAVN 124 Query: 85774 DMSMLA 85791 DM ML+ Sbjct: 125 DMFMLS 130 >ref|NP_445672.1|putative helicase Length = 601 Score = 74.3 bits (181), Expect = 7e-12 Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 21/207 (10%) Frame = -1 Query: 158038 LPFELDDFQTEANDA-LEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKAL 157862 + +L++FQ +A + L + N+L+ APTG GK+ + A+ +A E + YT P++AL Sbjct: 4 MSIQLNEFQKKALQSFLMSDKNLLITAPTGTGKSFL---AMLMAMETKSRVVYTVPLRAL 60 Query: 157861 SNQKYHDLVDVYGPDKVGLLTGDTSINSEADIVVMTTEVLRN-----------MLYERST 157715 + Q D + P +N AD V +T+EV YE++ Sbjct: 61 ALQLNDDFHNKVAP----------LVNGYADSVALTSEVYEEDPENLEERVIFTTYEKAD 110 Query: 157714 TLNALRY--------VILDEVHYLADRFRGPVWEEVIIH-LPKTVKIVGLSATVSNVEDF 157562 + Y +I+DE+H + D+ RG E +I + + + ++IV +SAT+ +V Sbjct: 111 AIFRRHYPWTDRIETLIIDEIHNIGDKERGKAIENLIAYAMNEGIRIVAMSATIPDVNKI 170 Query: 157561 SNWIASVRGDTKLVISEHRPVPLEQHV 157481 + I D +++ ++ RP+PL + V Sbjct: 171 AEII-----DAEIIKTDERPIPLYKAV 192 Score = 45.4 bits (106), Expect = 0.003 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 7/137 (5%) Frame = -1 Query: 157129 LELTTD--EEVTKIRRIVDEMVEGQLTQEDLKALQFSKFRFALEEGFASHHAGMIALFRQ 156956 +EL D +++ + ++V + E+L + KF + A HAG+ A + Sbjct: 206 IELKEDFIKKMVRKNKVVMIFTSTRKKAEELYMIYDRKF----QNKVAFFHAGLDAETKL 261 Query: 156955 IVERLFEEGLVKMVFATETLALGINMPARCVVVEKL-----EKFDGTGHVGLTPGEFTQL 156791 + +G ++ +T L+ G+N P VV + L E TG +TP EF Q+ Sbjct: 262 RLLEETRQGKYNIIVSTTALSQGVNFPFYAVVFDDLKLPIIEYGRFTGWKQITPIEFDQI 321 Query: 156790 TGRAGRRGIDTIGHAIV 156740 GRAGR G D G I+ Sbjct: 322 CGRAGRPGYDEEGLCII 338 >ref|NP_852553.1|hypothetical protein Length = 264 Score = 72.0 bits (175), Expect = 3e-11 Identities = 54/217 (24%), Positives = 102/217 (47%), Gaps = 11/217 (5%) Frame = -1 Query: 360760 DLTKMPHLLVAGATGSGKSSFINSMLTSIIMRATPEQVRLIMVDPKR--VELSAYAGIPH 360587 D K PH+++ G T GK+ F+ +LT++I A PE + ++D K +E S ++G+ Sbjct: 12 DFDKTPHMVLGGLTRMGKTVFMKVLLTTLI-EANPENAHVYLIDLKEKGLEFSEFSGLKQ 70 Query: 360586 LLTPIITDPKKAAQALEWVVKEMDARYSDLEFFGFRHVKDFNEAVRAGKVHAPAGSQRKV 360407 ++ + +KA L+ ++K+++ R ++ G++++ + E R Sbjct: 71 VVE-VSDSVEKAHHVLKQIMKKIEERGKFMKENGYKNIVETKEKDR-------------- 115 Query: 360406 APYPYILVVVDEMADLMMVA---------KNDVESSIQRITQLARAAGVHLVLATQRPSV 360254 V+VDE A L + + + + I ++ G L+LATQ P+V Sbjct: 116 -----YFVIVDEGAVLAPAKGLPRHINKIREECQYMLSYIATVSGGLGFRLILATQYPTV 170 Query: 360253 DVVTGLIKANIPSRLAFATSSATDSRVILDTVGAETL 360143 + ++K ++L F + S V+LD G ETL Sbjct: 171 TSIPSVVKQMSDAKLGFRLPTYKASEVVLDESGLETL 207 >ref|NP_803278.1|dUTPase Length = 169 Score = 70.9 bits (172), Expect = 7e-11 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 26/151 (17%) Frame = -3 Query: 323951 HAGDAGADLITTVDVTLKPFERALVPTGVAIALPAGYVALVHPRSGLAAKQGVTVLNAPG 323772 H DAG D+ + V L+P E+A++ T VA+++P GYV L+ RSG+++K + + G Sbjct: 21 HKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTHLVI--ETG 78 Query: 323771 TVDAGYRGEIKVPLIN-------------------------LDPKHTAVFHPGDRIAQLV 323667 +DAGY G + + + N + T + GD++AQLV Sbjct: 79 KIDAGYHGNLGINIKNDAIASNGYITPGVFDIKGEIDLSDAIRQYGTYQINEGDKLAQLV 138 Query: 323666 IQRYVEARFIPAETLPG-SDRAERGFGSTGV 323577 I E S+R E+GFGS+GV Sbjct: 139 IVPIWTPELKQVEEFESVSERGEKGFGSSGV 169 >ref|NP_861734.1|UvsX RecA-like recombination protein Length = 390 Score = 70.9 bits (172), Expect = 7e-11 Identities = 70/270 (25%), Positives = 117/270 (43%), Gaps = 11/270 (4%) Frame = -1 Query: 356926 NVEVIPTGSLALDMALG---IGGLPKGRIVEIYGPESSGKTTLALHVVANAQKK--GGVA 356762 N + +PT L++ALG GL G + P KT L +VA KK + Sbjct: 28 NRDEVPTRIPMLNIALGGALNAGLQSGLTI-FAAPSKHFKTLFGLTMVAAYMKKYKDAIC 86 Query: 356761 AYIDAEHALDPAYARKLGVDTDSLIVSQPDNGEQ-ALEIADML--IRSGALDVIVIDSVA 356591 + D+E +Y R +GVD D ++ + + EQ +++ + L I G +I IDS+ Sbjct: 87 LFYDSEFGASESYFRSMGVDLDRVVHTPIQSVEQLKVDMTNQLDAIERGDKVIIFIDSIG 146 Query: 356590 ALVPKAEIEGEMGDSHVG--LQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGN 356417 K E E + + VG +A+ + R +T L + IN +IG + Sbjct: 147 NTASKKETEDALNEKVVGDMSRAKALKSLFRIVTPYLTIKDIPCVAINHTAMEIGGLYPK 206 Query: 356416 PETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYG 356237 E GG + + A+ I + Q +K G E G +K K++ + + + Sbjct: 207 -EIMGGGTGILYSANTVFFISKRQ-VKEGTELTGYDFTLKAEKSRTVKEKSTFPITVNFD 264 Query: 356236 EGISREGSVIDMAQQVG-VVKKSGSWFTYE 356150 GI +++MA ++G VVK W+ E Sbjct: 265 GGIDPFSGLLEMATEIGFVVKPKAGWYARE 294 >ref|NP_058491.1|dUTPase Length = 175 Score = 67.8 bits (164), Expect = 6e-10 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 26/170 (15%) Frame = -3 Query: 324008 TEVLVKSLDPEHPAQLHYAHAGDAGADLITTVDVTLKPFERALVPTGVAIALPAGYVALV 323829 T L L E+ H DAG D+ + V L+P E+A++ T VA+++P GYV L+ Sbjct: 8 TNTLQVKLLSENARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLL 67 Query: 323828 HPRSGLAAKQGVTVLNAPGTVDAGYRGEIKVPLIN------------------------- 323724 RSG+++K + + G +DAGY G + + + N Sbjct: 68 TSRSGVSSKTHLVI--ETGKIDAGYHGNLGINIKNDAIASNGYITPGVFDIKGEIDLSDA 125 Query: 323723 LDPKHTAVFHPGDRIAQLVIQRYVEARFIPAETLP-GSDRAERGFGSTGV 323577 + T + GD++AQLVI E S+R +GFGS+GV Sbjct: 126 IRQYGTYQINEGDKLAQLVIVPIWTPELKQVEEFECVSERGAKGFGSSGV 175 >ref|NP_665998.1|putative C5-cytosine methyltransferase Length = 283 Score = 67.4 bits (163), Expect = 8e-10 Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 19/189 (10%) Frame = +1 Query: 281668 LFAGIGGIRMGMVQALGDAAHVVYSSEWNKYSVQTYEANW--------HDENPVA--GDI 281817 LF+GIGG +G +A + + E N+ + TY AN DE PV DI Sbjct: 34 LFSGIGGFDLGFSRA---GFKNLVAVEANQDAADTYRANLINDCENYGQDEPPVLMERDI 90 Query: 281818 TKVDEHDVPD--------IDLLLAGFPCQPFSIAGVSKKQSMGRPTGFEDKTQGTLFFDV 281973 TKV ++ + + + G PCQ FS G + ED + L+ ++ Sbjct: 91 TKVATWEILEAAGIGVGQLTAVSGGPPCQGFSHIGKRE----------EDDPRNELYLEM 140 Query: 281974 ARIIKAKQPKAFLLENVKNLLSHDRGRTFKTIYSVLTEDLGYHVTYKLIDAAGF-VPQHR 282150 RI+ +P F++ENV L + G + E GY VT+ DAA + VPQHR Sbjct: 141 VRIVHQAKPVFFVMENVPGLATMHDGEAIMEVCENF-EAGGYEVTWDKHDAADYGVPQHR 199 Query: 282151 ERTYIVGFR 282177 ER ++G R Sbjct: 200 ERVLVIGKR 208 >ref|NP_040341.1|putative transposase Length = 322 Score = 67.4 bits (163), Expect = 8e-10 Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 2/150 (1%) Frame = +3 Query: 75690 GHWEGDLITGSRNKSAIGTLVERTTR--FTILLHLPDGHDAEHVQQAIIDKMQHLPKLLR 75863 G E D + G +KSAI LVE+ ++ F I L + E + II K + K+ Sbjct: 173 GWLEMDTVVGKDHKSAILVLVEQLSKKYFAIKLENHTAREVEKKFKDIIIKNNLIGKI-- 230 Query: 75864 NSLTWDQGAELALHKRIGASLDMAVYFCDPHSPWQRGTNENTNGLLRQYFPKGTDLSVYP 76043 + D+ E + + + + VYFCD SP Q+ E N LR +FPKGTD + Sbjct: 231 KGIITDRRKEFSKWREMEIFAETQVYFCDAGSPQQKPLIEYMNSELRHWFPKGTDFNKVS 290 Query: 76044 EDYLDAVAEELNDRPRKTLGFMKPSEKIIE 76133 + +D V +ND+ R L ++ E ++ Sbjct: 291 QKQIDWVVNVINDKLRPCLNWISSKEMFLQ 320 Score = 54.3 bits (129), Expect = 7e-06 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Frame = +1 Query: 125395 DGHDAEHVQQA---IIDKMQHLPKLLRNSLTWDQGAELALHKRIGASLDMAVYFCDPHSP 125565 + H A V++ II K + K+ + D+ E + + + + VYFCD SP Sbjct: 206 ENHTAREVEKKFKDIIIKNNLIGKI--KGIITDRRKEFSKWREMEIFAETQVYFCDAGSP 263 Query: 125566 WQRGTNENTNGLLRQYFPKGTDLSVYPEDYLDAVAEELNDRPRKTLGFMKPSEKIIE 125736 Q+ E N LR +FPKGTD + + +D V +ND+ R L ++ E ++ Sbjct: 264 QQKPLIEYMNSELRHWFPKGTDFNKVSQKQIDWVVNVINDKLRPCLNWISSKEMFLQ 320 >ref|NP_818403.1|gp105 Length = 266 Score = 66.6 bits (161), Expect = 1e-09 Identities = 80/294 (27%), Positives = 123/294 (41%), Gaps = 12/294 (4%) Frame = -3 Query: 90860 PTLAGLATLTRN----VAYKTGADNLVMDIISPQSTGDDDDRRYPTVVFVQGSAWTTPHR 90693 P LA L R+ VAY + N +DI P+S P +F+ G AWT R Sbjct: 3 PALAHLEARQRHLWDTVAY---SGNQKLDIWLPESP-----ENAPVFMFIPGGAWTIGDR 54 Query: 90692 ---DYEIPQLSALAREGFVVATVNHRDASSDPHDMFPAYLEDVKAAIRYLRANARQWHVD 90522 Y I +S L ++G++ +++R A P + +PA EDV AA ++RAN Q+ Sbjct: 55 RGQGYAI--MSHLVQQGWICVAIDYRTA---PKNHWPAPFEDVSAAFHWVRANIHQYG-G 108 Query: 90521 PDRLGIWGTSSGGNTSLLVGLTADDPRYEDGTNADESDAVKYVVSCFPPTDMLEAVDAFD 90342 D L + G S+GG+ + L+GLT + + DAV + D Sbjct: 109 GDFLAVGGASAGGHMASLLGLT--------DWSFSKPDAV---------VSLYGVYDWTS 151 Query: 90341 DETNPFRLYYFGPFAAVVGATHETGINAEVRQRAADMSPYLQVRDDQQYPPMLLLHGTAD 90162 + + + + V H+T SP Q+ D PP L++ G D Sbjct: 152 KSLDHWLINRYVQHVVVGRRDHDT---------LRISSPIHQIHRDA--PPFLIIQGDCD 200 Query: 90161 TVVPYHQSVKMRDRLAEHGVD-AQLVLVDGAEHEYDF---W-SQQVFDVIFDFI 90015 V P + K +L E ++ A V G H +D W + + D I DF+ Sbjct: 201 LVTPQSGAKKFFKKLKETSLNHAVYHRVPGGIHGFDLLQGWQTDRAIDAIDDFL 254 >ref|NP_899269.1|deoxyuridine 5'-triphosphate nucleotidohydrolase Length = 165 Score = 66.6 bits (161), Expect = 1e-09 Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 14/136 (10%) Frame = -3 Query: 323942 DAGADLITTVD--VTLKPFERALVPTGVAIALPA----------GYVALVHPRSGLAAKQ 323799 DAG DL ++ + L+P + ++P+GV I + + G + PRSGL K Sbjct: 30 DAGIDLRAAIEESIELQPGDSVVIPSGVKIHIGSHPLHQQYTDLGVYGAIAPRSGLGFKH 89 Query: 323798 GVTVLNAPGTVDAGYRGEIKVPLINLDPKHTAVFHPGDRIAQLVIQRYVE-ARFIPAETL 323622 + + N G +DA Y+GEI + + N + GDRI QL+ YV+ +F +T Sbjct: 90 FLRLANTIGIIDANYQGEIMIKIRN-EGDDVLHIERGDRICQLIFHTYVKNVQFEEVDTF 148 Query: 323621 -PGSDRAERGFGSTGV 323577 +DR RGFG +GV Sbjct: 149 DEETDRGARGFGGSGV 164 >ref|NP_803328.1|dUTPase Length = 186 Score = 65.9 bits (159), Expect = 2e-09 Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 37/162 (22%) Frame = -3 Query: 323951 HAGDAGADLITTVDVTLKPFERALVPTGVAIALPAGYVALVHPRSGLAAKQGVTVLNAPG 323772 H DAG D+ + V L+P E+A++ T VA+++P GYV L+ RSG+++K + + G Sbjct: 27 HKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTYLVI--ETG 84 Query: 323771 TVDAGYRGEIKVPLIN-------------------------LDPKHTAV----------- 323700 +DAGY G + + + N LD K V Sbjct: 85 KIDAGYHGNLGINIKNDEERDGIPFLYDDIDAELEDGLISILDIKGNYVQDGRGIRRVYQ 144 Query: 323699 FHPGDRIAQLVIQRYVEARFIPAETLPG-SDRAERGFGSTGV 323577 + GD++AQLVI E S+R +GFGS+GV Sbjct: 145 INKGDKLAQLVIVPIWTPELKQVEEFESVSERGAKGFGSSGV 186 >ref|NP_958659.1|77ORF021 Length = 180 Score = 65.9 bits (159), Expect = 2e-09 Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 37/162 (22%) Frame = -3 Query: 323951 HAGDAGADLITTVDVTLKPFERALVPTGVAIALPAGYVALVHPRSGLAAKQGVTVLNAPG 323772 H DAG D+ + V L+P E+A++ T VA+++P GYV L+ RSG+++K + + G Sbjct: 21 HKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTYLVI--ETG 78 Query: 323771 TVDAGYRGEIKVPLIN-------------------------LDPKHTAV----------- 323700 +DAGY G + + + N LD K V Sbjct: 79 KIDAGYHGNLGINIKNDEERDGIPFLYDDIDAELEDGLISILDIKGNYVQDGRGIRRVYQ 138 Query: 323699 FHPGDRIAQLVIQRYVEARFIPAETLPG-SDRAERGFGSTGV 323577 + GD++AQLVI E S+R +GFGS+GV Sbjct: 139 INKGDKLAQLVIVPIWTPELKQVEEFESVSERGAKGFGSSGV 180 >ref|NP_075491.1|phi PVL ORF 53 analogue Length = 175 Score = 65.5 bits (158), Expect = 3e-09 Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 32/176 (18%) Frame = -3 Query: 324008 TEVLVKSLDPEHPAQLHYAHAGDAGADLITTVDVTLKPFERALVPTGVAIALPAGYVALV 323829 T L L E+ H DAG D+ + V L+P E+A++ T VA+++P GYV L+ Sbjct: 2 TNTLQVKLLSENARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLL 61 Query: 323828 HPRSGLAAKQGVTVLNAPGTVDAGYRGEIKVPLINLDPKHTAV----------------- 323700 RSG+++K + + G +DAGY G + + + N + Sbjct: 62 TSRSGVSSKTHLVI--ETGKIDAGYHGNLGINIKNDAQVYLTTNEQCFDIQGEMENSFVN 119 Query: 323699 --------------FHPGDRIAQLVIQRYVEARFIPAETLPG-SDRAERGFGSTGV 323577 + GD++AQLVI E S+R +GFGS+GV Sbjct: 120 NAKKKPFTINDYYEIYKGDKLAQLVIVPIWTPELKQVEEFESVSERGAKGFGSSGV 175 >ref|NP_943888.1|hypothetical protein Length = 161 Score = 65.5 bits (158), Expect = 3e-09 Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 14/141 (9%) Frame = -3 Query: 323957 YAHAGDAGADLITTV--DVTLKPFERALVPTGV----------AIALPAGYVALVHPRSG 323814 + A AG DL + V LKP E ++P+G+ ++ L G + PRSG Sbjct: 21 FKSAEAAGIDLRAAIAETVVLKPGEDIVIPSGLKMDIGALQLASVFLDIGVYGCILPRSG 80 Query: 323813 LAAKQGVTVLNAPGTVDAGYRGEIKVPLINLDPKHTAVFHPGDRIAQLVIQRYVEA-RFI 323637 L K V + N G +D+ Y GEI + L N + PGDR+ Q+V YV+ F Sbjct: 81 LGFKHYVRLANTAGVIDSDYHGEIMIKLRNEGTGDLTIV-PGDRVVQMVFHLYVKGFGFK 139 Query: 323636 PAETLP-GSDRAERGFGSTGV 323577 E+ ++R E G GS+GV Sbjct: 140 EVESFDRNTERGESGIGSSGV 160 >ref|NP_695082.1|putative repressor Length = 134 Score = 65.1 bits (157), Expect = 4e-09 Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 4/107 (3%) Frame = -2 Query: 192699 AERLRNAMNSRGLKQVDLVHAAE----HRGVKMGKSHISQYVAGKTMPREDVLEFLASEL 192532 A+RL M R L+QVD++ +E G+K+GKS +SQYV+GK++P +D L L+ L Sbjct: 12 AQRLAQIMKERNLRQVDILRQSEKFQKELGIKLGKSALSQYVSGKSIPDQDKLVLLSKTL 71 Query: 192531 DVDTNWLRGEESTTQLNSDASNSVTDGEHAATPLAMGAAKPQTDSEI 192391 V WL G + T ++D D + + M KP +D ++ Sbjct: 72 GVSEAWLMGYD--TNESTDVKKESIDLSNLREKVVMFDGKPLSDDDV 116 >ref|NP_899256.1|UvsX Length = 366 Score = 64.7 bits (156), Expect = 5e-09 Identities = 64/256 (25%), Positives = 107/256 (41%), Gaps = 18/256 (7%) Frame = -1 Query: 356872 GGLPKGRIVEIYGPESSGKTTLALHVVANAQKK--GGVAAYIDAEHALDPAYARKLGVDT 356699 GGL G V + GP K+ L L VA KK V +ID E + P+Y R GVD Sbjct: 49 GGLTSGLTV-LAGPSKHFKSNLGLVGVAAYLKKYPDAVCVFIDTEFGITPSYLRSQGVDP 107 Query: 356698 DSLIVSQPDNGEQ-----ALEIADMLIRSGALD--------VIVIDSVAALVPKAEIEGE 356558 D ++ Q ++ E+ A ++ D+ R A + IDSV + EI+ Sbjct: 108 DRVLHIQCESVERMKFEMANQLKDLAERKRAKKAGEEPDRVIFFIDSVGNVASAKEIDDA 167 Query: 356557 MGDSHVG--LQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALK 356384 + V +A+ + R +T I IN + ++ + +GG + Sbjct: 168 QNEKSVADMSRAKQLKSLFRIITPYFTMLDIPCIAINHTYQTQEIY--SKTVMSGGTGIM 225 Query: 356383 FYASVRLDIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVID 356204 + A + + + Q K+G + +G + + K++ + Y GI ++D Sbjct: 226 YSADTVIILGK-QQEKDGKDIIGYHFIMNIEKSRFVKEKMKVPLTVTYENGIDPFSGLLD 284 Query: 356203 MAQQVG-VVKKSGSWF 356159 +A Q G VVK S W+ Sbjct: 285 IALQTGHVVKPSNGWY 300 >ref|NP_943894.1|UvsX Length = 411 Score = 63.9 bits (154), Expect = 9e-09 Identities = 67/261 (25%), Positives = 114/261 (43%), Gaps = 8/261 (3%) Frame = -1 Query: 356914 IPTGSLALDMALGIGGLPKGRIVEIYGPESSGKTTLALHVVANAQKK--GGVAAYIDAEH 356741 +P +LA+ L GGL G V + GP K+ L+L VA +K V + D E Sbjct: 48 VPLLNLAMSGELD-GGLTPGLTV-LAGPSKHFKSNLSLVFVAAYLRKYPDAVCIFFDNEF 105 Query: 356740 ALDPAYARKLGVDTDSLIVSQPDNGEQA-LEIADML--IRSGALDVIVIDSVAALVPKAE 356570 P Y GVD +I N E+ +I L I G ++ +DS+ K E Sbjct: 106 GSTPGYFESQGVDISRVIHCPFKNIEELKFDIVKKLEAIERGDRVIVFVDSIGNAASKKE 165 Query: 356569 IEGEMGDSHVG--LQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGG 356396 I+ + + V +A+ + R MT L AI + + ++ + + +GG Sbjct: 166 IDDAIDEKSVSDMTRAKQIKSLTRMMTPYLTVNDIPAIMVAHTYDTQEMY--SKKVVSGG 223 Query: 356395 KALKFYASVRLDIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREG 356216 + + + + I R Q K+G E +G + + K++ ++ + GI+ Sbjct: 224 TGITYSSDTVIIIGRQQE-KDGKELLGYNFVLNMEKSRFVKEQSKLPLEVTFQGGINTYS 282 Query: 356215 SVIDMAQQVG-VVKKSGSWFT 356156 ++D+A +VG VVK S WF+ Sbjct: 283 GMLDIALEVGFVVKPSNGWFS 303 >ref|YP_024453.1|putative PhoH-related protein Length = 246 Score = 63.5 bits (153), Expect = 1e-08 Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 14/147 (9%) Frame = +2 Query: 32240 AGTGKTYLAVAKAVRAFQDKQIRRIILTRPAVEAGESLGFLPGTLNDKVDPYLRPLYDAL 32419 AGTGKT +VA A + +K + + + P E LG PG +K Y L+DAL Sbjct: 60 AGTGKTMCSVACAYADYLNKNRKLVFIISPV---SEDLGSRPGNQTEKEMAYFMGLHDAL 116 Query: 32420 GDM------------LGADQLKR-YMDDGSIEVAPLAYMRGRTLNDAFVILDEAQNTTEQ 32560 ++ + D +K + D + ++RG L DA +I++EAQN Sbjct: 117 IELNMNPEQQITEMLMMEDNVKEDKLGDCWVSQISHLFLRGGNLRDATIIINEAQNFKRS 176 Query: 32561 QMKMFLTRLGF-NTTMVITGDISQVDL 32638 ++K LTR+ N+T+++ G+ Q+DL Sbjct: 177 ELKKVLTRVHTKNSTVIVEGNFKQIDL 203 >ref|NP_046572.1|ABC transporter Length = 705 Score = 63.2 bits (152), Expect = 2e-08 Identities = 48/165 (29%), Positives = 90/165 (54%), Gaps = 8/165 (4%) Frame = +3 Query: 216483 LMGNNGCGKTTLVRTLTGLIKPVSGRIELNGVPAKPRD-LTRAGFLVMQDVNYQLFSDSV 216659 ++G +G GK+T ++L+ L K I LNG+ D L+ +V D N LF ++ Sbjct: 514 IIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTI 573 Query: 216660 REELLIG--LDETD---AGITAQANQVMADLD--LAAFVERHPMSLSGGQKQRVAIGSAL 216818 +E L +G D+ + A I +Q ++ + +LD + + + +LS GQKQR+A+ A+ Sbjct: 574 KENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAI 633 Query: 216819 MCGKDLIILDEPTSGLDRYHMEQVGELLRQLASQGKAILVVTHDE 216953 + ++ILDE S +D + + + E L ++ I+++TH++ Sbjct: 634 LHQPQVLILDESLSNIDPDNTKLIYETLHRMDC---LIILITHND 675 Score = 58.9 bits (141), Expect = 3e-07 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 19/175 (10%) Frame = -1 Query: 219592 VNLAIDKGSRVVILGYNGAGKTTTLRLLAHIEEPDTGSVEYGHGCKIGYFAQ-------- 219437 +NL +D+ +V+I+G +G GK+T + L+ + + S+ Y +G I + Sbjct: 502 INLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSI-YLNGLDINRYDHLSIRKRIV 560 Query: 219436 --EHDTLDLNATVLENLQ----HVAPELDNTQARSILGSFLFSGDDAM-----KPAHVLS 219290 + + T+ ENL E++N S F+ + D + LS Sbjct: 561 YIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLS 620 Query: 219289 GGEKTRLALATLVTSRANVLLLDEPTNNLDPASREEILKAIAKYEGAIVLVTHDE 219125 G+K RLALA + + VL+LDE +N+DP + + I + + + + I+L+TH++ Sbjct: 621 TGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCLIILITHND 675 Score = 58.5 bits (140), Expect = 4e-07 Identities = 46/195 (23%), Positives = 89/195 (45%), Gaps = 8/195 (4%) Frame = +2 Query: 74195 RVIITDVNLTINAGERWVLFGPNGIGKSTAVGMLATRTFPSEGRVFILGHQLGKYDVFKL 74374 R I+ D+NL ++ ++ ++ G +G GKST L+ + +++ G + +YD + Sbjct: 496 RYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSI 555 Query: 74375 RTRIGLASADLGRQFPEFEDPLDAVVTGLSAVTGRWRDTYTQEEYARARQLLR------- 74533 R RI E+P + G + + Q E A + + Sbjct: 556 RKRIVYID----------ENPF--LFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICN 603 Query: 74534 -DFRVSYLEGKEMWRLSEGERTRVLIARALMGDPELLIMDEPTTGLDLGGREQVMRTLSR 74710 D + SY + LS G++ R+ +ARA++ P++LI+DE + +D + + TL R Sbjct: 604 LDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHR 663 Query: 74711 IGEENSERAVVLVTH 74755 + + ++L+TH Sbjct: 664 M-----DCLIILITH 673 Score = 44.7 bits (104), Expect = 0.006 Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Frame = +1 Query: 2722 LSGGEMRRVSIARALMNQPSLLIADEPTGDLDQESTDIVMRLLRDQANNGTAILMVTH-D 2898 LS G+ +R+++ARA+++QP +LI DE ++D ++T ++ L I+++TH D Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLH---RMDCLIILITHND 675 Query: 2899 PDALEY 2916 P +Y Sbjct: 676 PSNFKY 681 >ref|NP_046717.1|putative dUTPase Length = 142 Score = 62.8 bits (151), Expect = 2e-08 Identities = 50/143 (34%), Positives = 65/143 (45%), Gaps = 1/143 (0%) Frame = -3 Query: 324005 EVLVKSLDPEHPAQLHYAHAGDAGADLITTVDVTLKPFERALVPTGVAIALPAGYVALVH 323826 ++ +K LD E +++ GD DL DV +K E LVP GVA+ LP GY A V Sbjct: 2 QIKIKYLD-ETQTRINKMEQGD-WIDLRAAEDVAIKKDEFKLVPLGVAMELPEGYEAHVV 59 Query: 323825 PRSGLAAKQGVTVLNAPGTVDAGYRGEIKVPLINLDPKHTAVFHPGDRIAQLVIQRYVEA 323646 PRS GV N+ G +D Y+G+ GDRI Q I + + A Sbjct: 60 PRSSTYKNFGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTKIKKGDRICQFRIMKKMPA 119 Query: 323645 -RFIPAETLPGSDRAERGFGSTG 323580 I + L DR G GSTG Sbjct: 120 VDLIEVDRLGNGDRG--GHGSTG 140 >ref|YP_006959.1|putative deoxyUTP pyrophosphatase Length = 148 Score = 61.2 bits (147), Expect = 6e-08 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 1/109 (0%) Frame = -3 Query: 323903 LKPFERALVPTGVAIALPAGYVALVHPRSGLAAKQGVTVLNAPGTVDAGYRGEIKVPLIN 323724 + P + ++ TGVA+ +P G+ LV PRS L K+ + + N G +D+ YRG IK+ L N Sbjct: 40 IAPGKSLMIDTGVAVEIPRGWFGLVVPRSSL-GKRHLMIANTAGVIDSDYRGTIKMNLYN 98 Query: 323723 LDPKHTAVFHPGDRIAQLVI-QRYVEARFIPAETLPGSDRAERGFGSTG 323580 +R+ QLV+ Y F + L + R E GFGS+G Sbjct: 99 YG-SEMQTLENFERLCQLVVLPHYSTHNFKIVDELEETIRGEGGFGSSG 146 >ref|NP_818053.1|gp80 Length = 252 Score = 59.7 bits (143), Expect = 2e-07 Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 6/180 (3%) Frame = +1 Query: 281653 IRIADLFAGIGGIRMGMVQALGDAAHVVYSSEWNKYSVQTYEANW-----HDENPVAGDI 281817 + + LF+GIGG+ +G+ +A VV E N Y Q +W HD+ V + Sbjct: 1 MNVLSLFSGIGGLELGLERA---GMTVVGQVEINPYCRQILAKHWPHVPRHDD--VRTTV 55 Query: 281818 TKVDEHDVPDIDLLLAGFPCQPFSIAGVSKKQSMGRPTGFEDKTQGTLFFDVARIIKAKQ 281997 + + P +DL+ GFPCQ S AG K TG + G + V I + Sbjct: 56 EWWESEERPRVDLICGGFPCQDISNAGARK-----GITGPKSSLWGGMLHTVRNI----R 106 Query: 281998 PKAFLLENVKNLLSHDRGRTFKTIYSVLTEDLGYHVTYKLIDAAGF-VPQHRERTYIVGF 282174 P+ L+ENV LL R T+ + L E G++ + ++ A P RER +I+ + Sbjct: 107 PRYVLIENVAALLV----RGVDTVLADLHES-GFNAEWSVLSACAMGAPHTRERLFILAY 161 >ref|NP_758949.1|ORF58 Length = 210 Score = 59.3 bits (142), Expect = 2e-07 Identities = 53/166 (31%), Positives = 76/166 (45%), Gaps = 10/166 (6%) Frame = +3 Query: 248169 ETTMIVTIANAKGGVAKTTSAIYLAAAYARRFEEGATVL--DADPQSSASLWRDMAEENG 248342 E ++ I N KGG KTT + +A+ + +G VL D DPQ SA+ W + AEE Sbjct: 18 EMAKLIAILNQKGGAGKTTISTNVAS---QLHADGHKVLLVDLDPQGSATDWSEQAEEGS 74 Query: 248343 GWPAGTDVMPANLSTLQRLARAGHGGFAVVDAPPQ-GRLFEESVKAADFVVVPTSDSPID 248519 + + ++A +G+ VD PQ L +V+AAD V++PT SP D Sbjct: 75 EAVPVIRMGKTCTCDIHKVA-SGYEYLVSVDGAPQVADLAATAVRAADMVLIPTQPSPYD 133 Query: 248520 ------LQQAWATMNAIPDGKPGAVLIV-RAEPRTRAFQATVAALD 248636 L + + DG P A I+ RA RT+ ALD Sbjct: 134 CWSAAELVEIVKARQEVTDGIPKAAFIISRAIKRTKLEAEIKEALD 179 Score = 49.7 bits (117), Expect = 2e-04 Identities = 24/58 (41%), Positives = 32/58 (55%) Frame = +1 Query: 243595 KTVAFVNLKGGVGKTTSAIGTAEALARLGHTVTVRDADPSGAATLWAHKALSAGRPLP 243768 K +A +N KGG GKTT + A L GH V + D DP G+AT W+ +A +P Sbjct: 21 KLIAILNQKGGAGKTTISTNVASQLHADGHKVLLVDLDPQGSATDWSEQAEEGSEAVP 78 >ref|NP_049621.1|gp39 topoisomerase II, large subunit, N-terminal region Length = 516 Score = 59.3 bits (142), Expect = 2e-07 Identities = 59/230 (25%), Positives = 96/230 (41%), Gaps = 7/230 (3%) Frame = -1 Query: 339259 MSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKLKVNMKDSAMKVERDDIQAGLVA 339080 +++VN + T GG H+D M+ I + + ++ RK K+++ + +K L Sbjct: 265 LTYVNNIHTKNGGHHIDCAMDDICEDLIPQIK---RKFKIDVTKARVK-------ECLTI 314 Query: 339079 VVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGEMITGSKRGYKEQSGRVLEK--- 338909 V+ R D+ ++ RLT FGE+ + + K+ S +L Sbjct: 315 VMFVR-----------DMKNMRLIRQTKERLTSP-FGEIRSHIQLDAKKISRDILNNEAI 362 Query: 338908 ----IVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELFIVEGDSALG 338741 I + ++ + KA E K A A + + G D LF+ EGDSA+G Sbjct: 363 LMPIIEAALARKLAAEKAAETKAAKKA-SKAKVHKHIKANLCGKDADTTLFLTEGDSAIG 421 Query: 338740 TAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQ 338591 R+ P+RGK+LN S ML NKE I + G G+ Sbjct: 422 YLIDVRDKELHGGYPLRGKVLNSWGMSYADMLKNKELFDICAITGLVLGE 471 Score = 52.8 bits (125), Expect = 2e-05 Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 24/121 (19%) Frame = -1 Query: 340348 DLAVLEGLDAVRKRPGMYIGTTDSQ-----------------GLMHCLWEIIDNSVDEAL 340220 ++ +L ++ ++KR GMYIG++ ++ GL+ + EIIDNSVDE + Sbjct: 5 EIKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDEGI 64 Query: 340219 A---GFCNDIVVTLHTDGSVEVADNGRGIP--VDKEPKTG--LSGVEVVLTKLHAGAKFG 340061 F N I VT+ + V V DNGRGIP + K P TG + G T AG FG Sbjct: 65 RTKFKFANKINVTI-KNNQVTVEDNGRGIPQAMVKTP-TGEEIPGPVAAWTIPKAGGNFG 122 Query: 340060 N 340058 + Sbjct: 123 D 123 >ref|NP_891595.1|UvsX Length = 356 Score = 59.3 bits (142), Expect = 2e-07 Identities = 63/250 (25%), Positives = 105/250 (42%), Gaps = 11/250 (4%) Frame = -1 Query: 356872 GGLPKG---RIVEIYGPESSGKTTLALHVVANAQKKGGVAA--YIDAEHALDPAYARKLG 356708 G L KG ++ GP K+ + L V+ K+ AA + D+E + AY +G Sbjct: 44 GDLKKGFQSGLIFFAGPSKHFKSNMGLTCVSAYMKQNPDAACLFFDSEFGITSAYLESMG 103 Query: 356707 VDTDSLIVSQPDNGEQ-ALEIADMLIRSGALD--VIVIDSVAALVPKAEIEGEMGDSHVG 356537 VD D ++ N E+ EI + L + D +I IDS+ L K E+E + + Sbjct: 104 VDPDRVVHVPIKNIEELKFEIMNQLEQITREDKVIIFIDSIGNLASKKEVEDAINEKSAQ 163 Query: 356536 --LQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRL 356363 +A+ + R +T L I IN E +F + +GG + A+ Sbjct: 164 DMTRAKALKGLFRMVTPYLTMNDIPCIAINHTYETQEMF--SKTVMSGGTGAMYSANEVF 221 Query: 356362 DIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVG- 356186 I R Q K G E G + K++ + + GI ++++A ++G Sbjct: 222 IIGRRQQ-KEGTEITGYDFILNAEKSRTVKEKSKFPISVTFSGGIDPYSGLLELAVELGW 280 Query: 356185 VVKKSGSWFT 356156 VVK S W++ Sbjct: 281 VVKPSNGWYS 290 >ref|NP_818426.1|gp128 Length = 184 Score = 58.9 bits (141), Expect = 3e-07 Identities = 33/71 (46%), Positives = 39/71 (54%) Frame = +1 Query: 282370 TDHTRTLSARYGKDGSEILVSRGEGKNPRRLTPRECARLMGYPDSFSIPVSDTQAYRQFG 282549 TD LS GK G + RRLTP EC RL GYPD ++ SD Q YRQ G Sbjct: 102 TDVAGNLSTGGGKPGQGYAAIMDQ-YGVRRLTPLECERLQGYPDGYTDRQSDAQRYRQLG 160 Query: 282550 NSVAVPVIRAI 282582 NSVA+P ++ I Sbjct: 161 NSVAIPCVQWI 171 >ref|NP_817858.1|gp7 Length = 196 Score = 58.2 bits (139), Expect = 5e-07 Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 23/197 (11%) Frame = +1 Query: 281647 SEIRIADLFAGIGGIRMGMVQALGDAAHVVYSSEWNKYSVQTYEANWHDENPVAGDITKV 281826 S+ RI LF+G G + + QA G VV+ E ++ + W P GD+ +V Sbjct: 5 SQPRIGSLFSGSGMLDRAVEQATG--GRVVWHCENDRAAKLVLAERWPGV-PNLGDVRRV 61 Query: 281827 D----EHDVPDIDLLLAGFPCQPFSIAGVSKKQSMGRPTGFEDKTQGTLFFDVARIIKAK 281994 + + +D+L GFPC S AG R G TQ L+ + R I Sbjct: 62 NWSRIRWSLGPVDILCGGFPCTDISPAG--------RQAGLAPGTQSGLWVEFVRAIDTL 113 Query: 281995 QPKAFLLENVKNLL----------------SHDRGRTFKTIYSVLTE--DLGYHVTYKLI 282120 +P+ ++ENV+NLL D + I +VL + DLG+ ++++ Sbjct: 114 RPQTVVIENVRNLLHVRANIRSTLGRMGPDQRDMAGDPRGIGAVLGDLADLGFDAEWEVV 173 Query: 282121 DAA-GFVPQHRERTYIV 282168 A+ P R+R ++V Sbjct: 174 PASDAGAPHRRQRIFVV 190 >ref|NP_817742.1|gp65 Length = 513 Score = 58.2 bits (139), Expect = 5e-07 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 11/189 (5%) Frame = +1 Query: 281653 IRIADLFAGIGGIRMGMVQALGDAAHVVYSSEWNKYSVQTYEANWHDENPVAGDITKVDE 281832 + + DLF G GG G ++ G V S+ W+ +V+T+ N D + V D++++D Sbjct: 2 LTLTDLFCGAGGSSTGAIEIPGVEVRVA-SNHWD-LAVETHNTNHPDADHVCADLSQIDP 59 Query: 281833 HDVPDIDLLLAGFPCQPFSIAGVSKKQSMGR-------PTGFEDKTQGTLFFDVARIIKA 281991 P D+L A C S+A K+ P ++++ T++ DV R +A Sbjct: 60 RRFPRTDILWASPECTNHSVAKGRKRVDSQPDLFGEVLPDAAAERSRATMW-DVPRFAEA 118 Query: 281992 KQPKAFLLENVKNLLSHDRGRTFKTIYSVLTEDLGYHVTY-KLIDAAGF---VPQHRERT 282159 + +A ++ENV + + + L D +H+ + + A F PQ R+R Sbjct: 119 HRYQAVIVENVVDAWHWQPFQAWLMAMDSL--DYEHHIVFLNSMHAQAFGPGAPQSRDRM 176 Query: 282160 YIVGFREEN 282186 Y+V +R N Sbjct: 177 YVVFWRRGN 185 >ref|NP_878228.1|Int Length = 326 Score = 56.6 bits (135), Expect = 1e-06 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 2/103 (1%) Frame = -1 Query: 296260 KGNKERMLPVPAKLASALRKRTGVWLFPGDVQGHCGVDYVAKRIKT--VTGYPSHSLRRR 296087 K K+R +P+ +L +++ LF D + CG+ +R+K +H LR Sbjct: 217 KNGKKRTVPISEELEKKVKEEASAKLFKVDYEKFCGI---LRRVKPDIPPNQATHILRHT 273 Query: 296086 FATCVYYRNGCNIVLVSRMLGHANIATTMRYIGLVQDEMRNAV 295958 FA+ + NG NI+ + ++LGHA+I TM Y L D ++NAV Sbjct: 274 FASH-FMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315 >ref|NP_839878.1|Int Length = 326 Score = 56.6 bits (135), Expect = 1e-06 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 2/103 (1%) Frame = -1 Query: 296260 KGNKERMLPVPAKLASALRKRTGVWLFPGDVQGHCGVDYVAKRIKT--VTGYPSHSLRRR 296087 K K+R +P+ +L +++ LF D + CG+ +R+K +H LR Sbjct: 217 KNGKKRTVPISEELEKKVKEEASAKLFKVDYEKFCGI---LRRVKPDIPPNQATHILRHT 273 Query: 296086 FATCVYYRNGCNIVLVSRMLGHANIATTMRYIGLVQDEMRNAV 295958 FA+ + NG NI+ + ++LGHA+I TM Y L D ++NAV Sbjct: 274 FASH-FMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315 >ref|NP_663639.1|putative cI-like repressor Length = 188 Score = 55.1 bits (131), Expect = 4e-06 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Frame = -2 Query: 192693 RLRNAMNSRGLKQVDLVHAA----EHRGVKMGKSHISQYVAGKTMPREDVLEFLASELDV 192526 RL+ MN RGL+QVD++ + + G+KM K+H+S Y+ GK+ P + L L+ L V Sbjct: 15 RLKKIMNDRGLRQVDILEKSKPFQDKLGIKMSKTHLSNYINGKSNPDQQKLILLSQTLGV 74 Query: 192525 DTNWLRG 192505 WL G Sbjct: 75 SEPWLMG 81 >ref|NP_958514.1|putative cI repressor Length = 145 Score = 54.3 bits (129), Expect = 7e-06 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Frame = -2 Query: 192696 ERLRNAMNSRGLKQVDLVHAAEHRG---VKMGKSHISQYVAGKTMPREDVLEFLASELDV 192526 +RL+ M LKQVD++ + +K+ K+ +SQYV KT PR D L LA LDV Sbjct: 22 DRLKEYMKEHNLKQVDIIEKTKPFSTSKLKITKTDLSQYVNNKTDPRSDKLHLLAKSLDV 81 Query: 192525 DTNWLRGEESTTQLNSDASNSVTD 192454 D WL G + S +++ D Sbjct: 82 DEAWLLGFDKHAHKTSHHNSTSRD 105 >ref|NP_663658.1|putative dUTPase Length = 139 Score = 53.1 bits (126), Expect = 2e-05 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Frame = -3 Query: 323939 AGADLITTVDVTLKPFERALVPTGVAIALPAGYVALVHPRSGLAAKQGVTVLNAPGTVDA 323760 AG D+ ++ VT++P E +V TG+A+ L V ++ RS K+G+ ++N+ G +D+ Sbjct: 23 AGYDISSSETVTIQPDEIKMVSTGLAVQLGDDEVLKLYDRSSNPVKRGIALINSVGIIDS 82 Query: 323759 G-YRGEIKVPLINLDPKHTAVFHPGDRIAQLVIQRYVEARFIPAETLPGSDRAERGFGST 323583 Y E K +N+ K G RI Q V +Y + + + + GFGST Sbjct: 83 DYYPQEFKGLFMNIS-KEPVTISKGQRIMQGVFVKY-----LTTDDDNANGKRTGGFGST 136 Query: 323582 G 323580 G Sbjct: 137 G 137 >ref|NP_958626.1|77ORF011 Length = 255 Score = 53.1 bits (126), Expect = 2e-05 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Frame = -2 Query: 192699 AERLRNAMNSRGLKQVDLVHAAE----HRGVKMGKSHISQYVAGKTMPREDVLEFLASEL 192532 +ERL+ M R L+QVD++ ++ +KM KSH+SQYV G++ P + L L+ L Sbjct: 5 SERLKQIMKDRNLRQVDILEKSKPFQKELNIKMSKSHLSQYVNGRSSPDQHKLFLLSKTL 64 Query: 192531 DVDTNWLRG 192505 +V WL G Sbjct: 65 NVGEAWLMG 73 >ref|NP_112684.1|DUT Length = 139 Score = 52.8 bits (125), Expect = 2e-05 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Frame = -3 Query: 323939 AGADLITTVDVTLKPFERALVPTGVAIALPAGYVALVHPRSGLAAKQGVTVLNAPGTVDA 323760 AG D+ + VT++P E +V TG+A+ L V ++ RS K+G+ ++N+ G +D+ Sbjct: 23 AGYDISASETVTIQPDEIKMVSTGLAVQLGDDEVLKLYDRSSNPVKRGIALINSVGIIDS 82 Query: 323759 G-YRGEIKVPLINLDPKHTAVFHPGDRIAQLVIQRYVEARFIPAETLPGSDRAERGFGST 323583 Y E K +N+ K G RI Q V +Y+ A + + GFGST Sbjct: 83 DYYPQEFKGLFMNIS-KEPVTISKGQRIMQGVFVKYLTTNDDNA-----NGKRTGGFGST 136 Query: 323582 G 323580 G Sbjct: 137 G 137 >ref|NP_108702.1|dUTPase Length = 139 Score = 52.8 bits (125), Expect = 2e-05 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Frame = -3 Query: 323939 AGADLITTVDVTLKPFERALVPTGVAIALPAGYVALVHPRSGLAAKQGVTVLNAPGTVDA 323760 AG D+ + VT++P E +V TG+A+ L V ++ RS K+G+ ++N+ G +D+ Sbjct: 23 AGYDISASETVTIQPDEIKMVSTGLAVQLGDDEVLKLYDRSSNPVKRGIALINSVGIIDS 82 Query: 323759 G-YRGEIKVPLINLDPKHTAVFHPGDRIAQLVIQRYVEARFIPAETLPGSDRAERGFGST 323583 Y E K +N+ K G RI Q V +Y + + + + GFGST Sbjct: 83 DYYPQEFKGLFMNIS-KEPVTISKGQRIMQGVFVKY-----LTTDDDNANGKRTGGFGST 136 Query: 323582 G 323580 G Sbjct: 137 G 137 >ref|NP_695048.1|dUTPase Length = 139 Score = 52.8 bits (125), Expect = 2e-05 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Frame = -3 Query: 323939 AGADLITTVDVTLKPFERALVPTGVAIALPAGYVALVHPRSGLAAKQGVTVLNAPGTVDA 323760 AG D+ + VT++P E +V TG+A+ L V ++ RS K+G+ ++N+ G +D+ Sbjct: 23 AGYDISASETVTIQPDEIKMVSTGLAVQLGDDEVLKLYDRSSNPVKRGIALINSVGIIDS 82 Query: 323759 G-YRGEIKVPLINLDPKHTAVFHPGDRIAQLVIQRYVEARFIPAETLPGSDRAERGFGST 323583 Y E K +N+ K G RI Q V +Y+ A + + GFGST Sbjct: 83 DYYPQEFKGLFMNIS-KEPVTISKGQRIMQGVFVKYLTTNDDNA-----NGKRTGGFGST 136 Query: 323582 G 323580 G Sbjct: 137 G 137 >ref|NP_996693.1|dUTPase Length = 141 Score = 52.8 bits (125), Expect = 2e-05 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Frame = -3 Query: 323939 AGADLITTVDVTLKPFERALVPTGVAIALPAGYVALVHPRSGLAAKQGVTVLNAPGTVDA 323760 AG D+ + VT++P E +V TG+A+ L V ++ RS K+G+ ++N+ G +D+ Sbjct: 23 AGYDISASETVTIQPDEIKMVSTGLAVQLGDDEVLKLYDRSSNPVKRGIALINSVGIIDS 82 Query: 323759 G-YRGEIKVPLINLDPKHTAVFHPGDRIAQLVIQRYVEARFIPAETLPGSDRAERGFGST 323583 Y E K +N+ K G RI Q V +Y + + + + GFGST Sbjct: 83 DYYPQEFKGLFMNIS-KEPVTISKGQRIMQGVFVKY-----LTTDDDNANGKRTGGFGST 136 Query: 323582 G 323580 G Sbjct: 137 G 137 >ref|NP_076719.1|dUTPase Length = 139 Score = 52.8 bits (125), Expect = 2e-05 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Frame = -3 Query: 323939 AGADLITTVDVTLKPFERALVPTGVAIALPAGYVALVHPRSGLAAKQGVTVLNAPGTVDA 323760 AG D+ + VT++P E +V TG+A+ L V ++ RS K+G+ ++N+ G +D+ Sbjct: 23 AGYDISASETVTIQPDEIKMVSTGLAVQLGDDEVLKLYDRSSNPVKRGIALINSVGIIDS 82 Query: 323759 G-YRGEIKVPLINLDPKHTAVFHPGDRIAQLVIQRYVEARFIPAETLPGSDRAERGFGST 323583 Y E K +N+ K G RI Q V +Y + + + + GFGST Sbjct: 83 DYYPQEFKGLFMNIS-KEPVTISKGQRIMQGVFVKY-----LTTDDDNANGKRTGGFGST 136 Query: 323582 G 323580 G Sbjct: 137 G 137 >ref|NP_076663.1|dUTPase Length = 139 Score = 52.8 bits (125), Expect = 2e-05 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Frame = -3 Query: 323939 AGADLITTVDVTLKPFERALVPTGVAIALPAGYVALVHPRSGLAAKQGVTVLNAPGTVDA 323760 AG D+ + VT++P E +V TG+A+ L V ++ RS K+G+ ++N+ G +D+ Sbjct: 23 AGYDISASETVTIQPDEIKMVSTGLAVQLGHDEVLKLYDRSSNPVKRGIALINSVGIIDS 82 Query: 323759 G-YRGEIKVPLINLDPKHTAVFHPGDRIAQLVIQRYVEARFIPAETLPGSDRAERGFGST 323583 Y E K +N+ K G RI Q V +Y + + + + GFGST Sbjct: 83 DYYPQEFKGLFMNIS-KEPVTISKGQRIMQGVFVKY-----LTTDDDNANGKRTGGFGST 136 Query: 323582 G 323580 G Sbjct: 137 G 137 >ref|NP_076600.1|dUTPase Length = 139 Score = 52.8 bits (125), Expect = 2e-05 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Frame = -3 Query: 323939 AGADLITTVDVTLKPFERALVPTGVAIALPAGYVALVHPRSGLAAKQGVTVLNAPGTVDA 323760 AG D+ + VT++P E +V TG+A+ L V ++ RS K+G+ ++N+ G +D+ Sbjct: 23 AGYDISASETVTIQPDEIKMVSTGLAVQLGDDEVLKLYDRSSNPVKRGIALINSVGIIDS 82 Query: 323759 G-YRGEIKVPLINLDPKHTAVFHPGDRIAQLVIQRYVEARFIPAETLPGSDRAERGFGST 323583 Y E K +N+ K G RI Q V +Y+ A + + GFGST Sbjct: 83 DYYPQEFKGLFMNIS-KEPVTISKGQRIMQGVFVKYLTTNDDNA-----NGKRTGGFGST 136 Query: 323582 G 323580 G Sbjct: 137 G 137 >ref|NP_813725.1|gp9.1 Length = 166 Score = 51.6 bits (122), Expect = 5e-05 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 1/164 (0%) Frame = +1 Query: 281659 IADLFAGIGGIRMGMVQALGDAAHVVYSSEWNKYSVQTYEANWHDENPVAGDITKVDEHD 281838 I +L AG GG+ + + GD VV +E +K + + + + D P GD+ D Sbjct: 3 ILELCAGYGGLGIAVEALTGDKVTVV--AEVHKAACEVMKYRFPDA-PNIGDVRHARWED 59 Query: 281839 VP-DIDLLLAGFPCQPFSIAGVSKKQSMGRPTGFEDKTQGTLFFDVARIIKAKQPKAFLL 282015 + ++D + AGFPCQ S A G+ G + + G ++F++A I+ +P+ L Sbjct: 60 LRGEVDTITAGFPCQDISNA--------GKRAGIQGERSG-IWFNIADAIRIIRPRYVYL 110 Query: 282016 ENVKNLLSHDRGRTFKTIYSVLTEDLGYHVTYKLIDAAGFVPQH 282147 ENV + R R + S L+E +GY + + A+ H Sbjct: 111 ENVGAI----RNRGQAAVLSSLSE-IGYDAVWTSLRASDIGAPH 149 >ref|NP_839892.1|putative repressor protein Length = 180 Score = 51.2 bits (121), Expect = 6e-05 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Frame = -2 Query: 192693 RLRNAMNSRGLKQVDLVHAA----EHRGVKMGKSHISQYVAGKTMPREDVLEFLASELDV 192526 RL+ MN RGL+QVD++ + + G+KM K+H+S Y+ GK+ + L L+ L V Sbjct: 2 RLKKIMNDRGLRQVDILEKSKPFQDKLGIKMSKTHLSNYINGKSNLDQQKLILLSQTLGV 61 Query: 192525 DTNWLRG 192505 WL G Sbjct: 62 SEPWLMG 68 >ref|NP_052278.1|Int Length = 336 Score = 50.4 bits (119), Expect = 1e-04 Identities = 35/112 (31%), Positives = 55/112 (49%) Frame = -1 Query: 296290 AEGMVLHVHGKGNKERMLPVPAKLASALRKRTGVWLFPGDVQGHCGVDYVAKRIKTVTGY 296111 A+ + + + KG K R +P+ +L +L LF D G I+ G Sbjct: 216 AKYKITYTNTKGRKNRTVPISKELYESLPDDKKGRLF-SDCYGAFRSALERTGIELPAGQ 274 Query: 296110 PSHSLRRRFATCVYYRNGCNIVLVSRMLGHANIATTMRYIGLVQDEMRNAVE 295955 +H LR FA+ + NG NI+++ R+LGH +I TMRY D + +AV+ Sbjct: 275 LTHVLRHTFASH-FMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDAVK 325 >ref|NP_046786.1|Int Length = 337 Score = 47.8 bits (112), Expect = 7e-04 Identities = 41/155 (26%), Positives = 67/155 (43%) Frame = -1 Query: 296422 EENIEQGLASPDENARLAVMLGAFCGLRRIEMTRINLKTDLEENAEGMVLHVHGKGNKER 296243 +E I LA+ D + + +L G R E R+ + + V V K NK R Sbjct: 167 QEEIALLLAALDGDNKKIAILCLSTGARWGEAARLKAENIIHNR----VTFVKTKTNKPR 222 Query: 296242 MLPVPAKLASALRKRTGVWLFPGDVQGHCGVDYVAKRIKTVTGYPSHSLRRRFATCVYYR 296063 +P+ +A + +LFP A + G +H+LR FAT + Sbjct: 223 TVPISEAVAKMIADNKRGFLFPDADYPRFRRTMKAIKPDLPMGQATHALRHSFAT-HFMI 281 Query: 296062 NGCNIVLVSRMLGHANIATTMRYIGLVQDEMRNAV 295958 NG +I+ + R+LGH I TM Y + +++A+ Sbjct: 282 NGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316 >ref|NP_958084.1|gp27 Length = 349 Score = 47.8 bits (112), Expect = 7e-04 Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 4/105 (3%) Frame = -1 Query: 296260 KGNKERMLPVPAKLASALRKRTGVWLFPGDVQGHCGVDY----VAKRIKTVTGYPSHSLR 296093 KG K R +P+ L L R G P C ++ + I+ G +H LR Sbjct: 234 KGKKNRTVPITKWLYEKLSTRQGRMFKP------CYQEFKKMLLLTDIELTEGQKTHVLR 287 Query: 296092 RRFATCVYYRNGCNIVLVSRMLGHANIATTMRYIGLVQDEMRNAV 295958 F + NG NI+++ ++LGHANI TM+Y D + AV Sbjct: 288 HTFGAH-FMMNGGNILVLQKILGHANIRETMKYSHFAPDHLEQAV 331 >ref|NP_112667.1|CI Length = 180 Score = 45.8 bits (107), Expect = 0.003 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 8/86 (9%) Frame = -2 Query: 192699 AERLRNAMNSRGLKQVDLVHAA----EHRGVKMGKSHISQYVAGKTMPREDVLEFLASEL 192532 + RL+ M R LKQVD+++ + + G+K+ KS +SQYV P ++ + LA L Sbjct: 6 SNRLKQIMAERNLKQVDILNLSIPFQKKFGIKLSKSTLSQYVNSVQSPDQNRIYLLAKTL 65 Query: 192531 DVDTNWLRGEE----STTQLNSDASN 192466 V WL G + ++++ +D+ N Sbjct: 66 GVSEAWLMGFDVPMVESSKIENDSEN 91 >ref|NP_705643.1|gp17 Length = 695 Score = 45.8 bits (107), Expect = 0.003 Identities = 21/63 (33%), Positives = 35/63 (55%) Frame = +3 Query: 129822 AGYPTPKLDTRAAIFDEEGRILMTHENSGEWSLPGGWVDENQSIRSNAVKEVKEETGLDV 130001 AG + A++ +G++L+ +G+W LP G V+ N++ A +E +EETG D Sbjct: 568 AGAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGLPAGKVEGNETPEEAARRETREETGYDH 627 Query: 130002 RGE 130010 GE Sbjct: 628 DGE 630 >ref|NP_958122.1|gp17 Length = 694 Score = 45.8 bits (107), Expect = 0.003 Identities = 21/63 (33%), Positives = 35/63 (55%) Frame = +3 Query: 129822 AGYPTPKLDTRAAIFDEEGRILMTHENSGEWSLPGGWVDENQSIRSNAVKEVKEETGLDV 130001 AG + A++ +G++L+ +G+W LP G V+ N++ A +E +EETG D Sbjct: 567 AGAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGLPAGKVEGNETPEEAARRETREETGYDH 626 Query: 130002 RGE 130010 GE Sbjct: 627 DGE 629 >ref|NP_932523.1|hypothetical protein Length = 155 Score = 45.8 bits (107), Expect = 0.003 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 5/149 (3%) Frame = -3 Query: 323444 AVIQHSAQRRKSGEPYIIHPLAVSQILADLGMGPIVVAAGLLHDTVE----DTDYTLDQC 323277 A +H+ Q K G PYI+HPL + V +LHD VE D + L Sbjct: 15 ATNRHAGQFDKGGAPYILHPLQLMHWARRDREALDVQILCVLHDVVEDCYDDREEGLRDI 74 Query: 323276 RAEFGDTVAGLVDGVTKLSQLEVGDSAQAETIRKLVVAMSRDVRTLVVKLADRVHNARTW 323097 FG ++A LVD VTK G+S + IR ++ D+R++ K D +NA Sbjct: 75 NTLFGSSMAQLVDNVTKRD----GESYECYLIR-----VNSDIRSVKCKRYDLRNNADLR 125 Query: 323096 RYVKTTSAQ-KKARETLDVYAPLANRLGM 323013 R T ++A + + Y + + G+ Sbjct: 126 RLKGVTPKDTERAVKYMTAYYNMGEKWGL 154 >ref|NP_536807.1|integrase Length = 337 Score = 45.4 bits (106), Expect = 0.003 Identities = 33/108 (30%), Positives = 52/108 (48%) Frame = -1 Query: 296278 VLHVHGKGNKERMLPVPAKLASALRKRTGVWLFPGDVQGHCGVDYVAKRIKTVTGYPSHS 296099 + V+ K K R +P+ +L L K+ G LF D + I+ G +H Sbjct: 224 ITFVNTKSKKNRTVPISKELFDMLPKKRGR-LF-NDAYESFENAVLRAEIELPKGQLTHV 281 Query: 296098 LRRRFATCVYYRNGCNIVLVSRMLGHANIATTMRYIGLVQDEMRNAVE 295955 LR FA+ + NG NI+++ +LGH+ I TMRY + +AV+ Sbjct: 282 LRHTFASH-FMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAVK 328 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 45.4 bits (106), Expect = 0.003 Identities = 58/168 (34%), Positives = 66/168 (39%), Gaps = 15/168 (8%) Frame = +3 Query: 242709 PPTTSMRATTGSRHRAP---------CAGC*SASPRTTQKANAM-PCWRHCGRAAPSW-T 242855 PP R T + AP GC A+P + A A+ P C R A T Sbjct: 73 PPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRPRAPECDRGAHHLRT 132 Query: 242856 RNPGRRTTASGSGSRPRPGRHPXXXXXXXXXGRRRCRHVPERRMRGFPRLVVGPH--VGA 243029 R P RT A G PG RRR R P RR++ PRL VG H GA Sbjct: 133 RAPRTRTRAVPLG----PGARVRTPVEDRRRTRRRRRPDPRRRVQ--PRLGVGVHRRRGA 186 Query: 243030 RRPAQPANPIRAAPRGGADLRGLPGQGRMPRVRHH--GPGPVRHLRRT 243167 RR + +RA P PG R PR R H P VR RRT Sbjct: 187 RRVGRRVR-VRARPG--------PGAARRPRRRPHPEHPRAVRPRRRT 225 >ref|NP_803358.1|cI-like repressor Length = 256 Score = 44.7 bits (104), Expect = 0.006 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Frame = -2 Query: 192699 AERLRNAMNSRGLKQVDLVHAAE----HRGVKMGKSHISQYVAGKTMPREDVLEFLASEL 192532 + RL++ M R LKQVD+++ ++ G+ + KS +SQY+ P +D + L+ L Sbjct: 6 SNRLKHIMKIRNLKQVDIINKSKPYQKKLGISLSKSTLSQYINDVQSPDQDRIYLLSKTL 65 Query: 192531 DVDTNWLRG 192505 +V WL G Sbjct: 66 NVGEAWLMG 74 >ref|NP_058469.1|repressor Length = 256 Score = 44.7 bits (104), Expect = 0.006 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Frame = -2 Query: 192699 AERLRNAMNSRGLKQVDLVHAAE----HRGVKMGKSHISQYVAGKTMPREDVLEFLASEL 192532 + RL++ M R LKQVD+++ ++ G+ + KS +SQY+ P +D + L+ L Sbjct: 6 SNRLKHIMKIRNLKQVDIINKSKPYQKKLGISLSKSTLSQYINDVQSPDQDRIYLLSKTL 65 Query: 192531 DVDTNWLRG 192505 +V WL G Sbjct: 66 NVGEAWLMG 74 >ref|NP_076576.1|repressor Length = 180 Score = 44.7 bits (104), Expect = 0.006 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Frame = -2 Query: 192699 AERLRNAMNSRGLKQVDLVHAA----EHRGVKMGKSHISQYVAGKTMPREDVLEFLASEL 192532 + RL+ M R LKQVD+++ + + G+K+ KS +SQYV P ++ + LA L Sbjct: 6 SNRLKQIMAERNLKQVDILNLSIPFQKKFGIKLSKSTLSQYVNSVQSPDQNRIYLLAKTL 65 Query: 192531 DVDTNWLRG 192505 V WL G Sbjct: 66 GVSEAWLMG 74 >ref|NP_818041.1|gp68 Length = 215 Score = 44.3 bits (103), Expect = 0.007 Identities = 20/47 (42%), Positives = 30/47 (63%) Frame = +1 Query: 243070 RAAVRICEACPVRAECLAFGIMVRDQYGIYGGLPLRARRQVLKTAQE 243210 + A RIC C VR ECL + + +Q+GI+GGL R RR +++ +E Sbjct: 42 KPAKRICGMCDVRDECLQWALDNNEQFGIFGGLSERERRPLVQARRE 88 >ref|NP_817403.1|gp65 Length = 215 Score = 44.3 bits (103), Expect = 0.007 Identities = 20/47 (42%), Positives = 30/47 (63%) Frame = +1 Query: 243070 RAAVRICEACPVRAECLAFGIMVRDQYGIYGGLPLRARRQVLKTAQE 243210 + A RIC C VR ECL + + +Q+GI+GGL R RR +++ +E Sbjct: 42 KPAKRICGICDVRDECLQWALDNNEQFGIFGGLSERERRPLVQARRE 88 >ref|NP_542557.1|deaminase protein deoxycytidine triphosphate-like protein Length = 182 Score = 43.9 bits (102), Expect = 0.010 Identities = 28/85 (32%), Positives = 45/85 (52%) Frame = -3 Query: 323918 TVDVTLKPFERALVPTGVAIALPAGYVALVHPRSGLAAKQGVTVLNAPGTVDAGYRGEIK 323739 +++ +LKP + AL T + +P V ++H RS + + G+ + NA G +D G+RG+I Sbjct: 66 SIEYSLKPGDFALAHTEEMVTIPPDMVGVLHGRSSVG-RLGLFIHNA-GFIDPGFRGQIT 123 Query: 323738 VPLINLDPKHTAVFHPGDRIAQLVI 323664 + L N H G R QL I Sbjct: 124 LELFNAS-NHPIQLKEGMRACQLAI 147 >ref|NP_043466.1|integrase Length = 337 Score = 43.9 bits (102), Expect = 0.010 Identities = 32/102 (31%), Positives = 49/102 (48%) Frame = -1 Query: 296260 KGNKERMLPVPAKLASALRKRTGVWLFPGDVQGHCGVDYVAKRIKTVTGYPSHSLRRRFA 296081 K K R +P+ +L L K+ G LF D + I+ G +H LR FA Sbjct: 230 KSKKNRTVPISKELFDMLPKKRGR-LF-NDAYESFENAVLRAEIELPKGQLTHVLRHTFA 287 Query: 296080 TCVYYRNGCNIVLVSRMLGHANIATTMRYIGLVQDEMRNAVE 295955 + + NG NI+++ +LGH+ I TMRY + +AV+ Sbjct: 288 SH-FMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAVK 328 >ref|NP_665964.1|putative plasmid partitioning protein Soj Length = 256 Score = 43.5 bits (101), Expect = 0.013 Identities = 21/42 (50%), Positives = 26/42 (61%) Frame = +1 Query: 243601 VAFVNLKGGVGKTTSAIGTAEALARLGHTVTVRDADPSGAAT 243726 + N KGG GKTT+ + A AL +LG+ V V D DP G AT Sbjct: 3 IGVTNQKGGAGKTTTTLNVAGALNQLGNDVLVIDLDPQGHAT 44 >ref|NP_795486.1|hypothetical protein Length = 374 Score = 43.5 bits (101), Expect = 0.013 Identities = 22/47 (46%), Positives = 31/47 (65%) Frame = +2 Query: 294740 DAVNGSKDHPILKAAGFHAMFENIHPFTDGNGRTGRQILNLMLMTAG 294880 +++N + D +L+ A HA FE IHPF DGNGR GR ++ LM + G Sbjct: 188 ESINFNSDI-LLRIAVAHAQFELIHPFLDGNGRLGRILIALMSVQEG 233 >ref|NP_944255.1|hypothetical protein; similar to DNA methyltransferase carboxy terminus Length = 80 Score = 43.5 bits (101), Expect = 0.013 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 6/58 (10%) Frame = +1 Query: 282454 RRLTPRECARLMGYPDSFSI------PVSDTQAYRQFGNSVAVPVIRAIGEAMRPYLS 282609 RRL P EC RL +PD ++ P +D Y+ GNS+AVP +R IG + L+ Sbjct: 8 RRLMPVECERLQEFPDGYTDVPYHGEPAADGPRYKAIGNSMAVPCMRWIGRRLAAALT 65 >ref|NP_944257.1|putative DnaC Length = 265 Score = 42.0 bits (97), Expect = 0.037 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 4/141 (2%) Frame = -3 Query: 318119 LVFYGKTGRGKTHLAIGLGMKAIDMGLGVRFHQTAELVLQLGKAKRDG--TLETMLRDIG 317946 L+F G G GK+HLA+ + + + A + +RD + E +L +G Sbjct: 128 LIFGGNPGTGKSHLALAIQQYVMRHSTAMYLDAMALIRRVRATWRRDAPQSEEEVLHTLG 187 Query: 317945 -RADLIILDEFGYVPFDIDGARLLYQIIAGSY-ERRSIIFTTNIEFSKWGTVFADDKLAA 317772 DL+ +DE G D ++++II Y + R I TN+ + D L A Sbjct: 188 FTVDLLAIDEIGVQRGTDDEQAIVFEIINRRYRDLRPTILMTNLNGAG-----LKDFLGA 242 Query: 317771 AIIDRIVHHGRLLEFTGQSRR 317709 +DR+ G +L F S R Sbjct: 243 RTMDRLYERGTMLPFMWPSHR 263 >ref|NP_958255.1|hypothetical protein Length = 81 Score = 42.0 bits (97), Expect = 0.037 Identities = 18/41 (43%), Positives = 28/41 (68%) Frame = +1 Query: 243070 RAAVRICEACPVRAECLAFGIMVRDQYGIYGGLPLRARRQV 243192 R A ++C AC V++ECLA + V + G++GGL R RR++ Sbjct: 33 RNARKVCGACEVQSECLAHALAVPETDGVWGGLTYRERRRL 73 >ref|NP_835600.1|putative glycosyltransferases Length = 484 Score = 41.6 bits (96), Expect = 0.048 Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 11/113 (9%) Frame = +2 Query: 73433 LPYLLKAL---HLISKDIQVVLCAGAPDTPEIAEEVKIAFAKLDEE-RGNIVWIEEM--- 73591 L Y+LK HL+ V+ G D P ++ F D + R +IV+I Sbjct: 228 LVYMLKNYRKHHLLIIKSDPVVPVGT-DIPAFLADINSFFHYRDIDLREHIVFISNDEVF 286 Query: 73592 ----LPKPELNALEHGCDAFICPSIYEPLGIVNLEAMACGLPVVASATGGIPE 73738 + E+ L +G D + S E GI +LEA CG PVVA+ TGGI + Sbjct: 287 HNGGFSREEIALLYNGADVVLQLSSNEGFGIASLEASLCGAPVVATMTGGIAD 339 >ref|NP_112719.1|ORF56 Length = 418 Score = 41.2 bits (95), Expect = 0.063 Identities = 23/44 (52%), Positives = 25/44 (56%) Frame = +2 Query: 294725 MEALVDAVNGSKDHPILKAAGFHAMFENIHPFTDGNGRTGRQIL 294856 +E LV +N KA H FEN HPF DGNGRTGR IL Sbjct: 212 LEDLVKFMNRDDIPTYEKAFISHFYFENTHPFYDGNGRTGRFIL 255 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 41.2 bits (95), Expect = 0.063 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 3/100 (3%) Frame = -1 Query: 238666 HRGVDLVAEQGTVILSPQAGTVSFAG--KVAGKDVVSVRHRGGVTSTFEPAVT-ELSVGD 238496 H+G D A+ GT I S Q+G V AG K AG VV + G V T + G Sbjct: 1580 HKGTDFAAKAGTAIKSLQSGKVQIAGYSKTAGNWVVIKQDDGTVAKYMHMLNTPSVKAGQ 1639 Query: 238495 TISRRQPVGIVEGSSDHCEDRCLHWGLKRGTADYLDPQQY 238376 ++ Q +G V GS+ + LH +++ +DP++Y Sbjct: 1640 SVKAGQTIGKV-GSTGNSTGNHLHLQIEQ-NGKTIDPEKY 1677 >ref|NP_049618.1|gp60 topoisomerase II, large subunit, C-terminal region Length = 160 Score = 40.8 bits (94), Expect = 0.082 Identities = 41/150 (27%), Positives = 64/150 (42%) Frame = -1 Query: 338593 QSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALT 338414 +S Y + +MTDAD DG L F+ L E G + P+ IA Sbjct: 24 RSIKSSSMNYANVAIMTDADHDGLGSIYPSLLGFFSNWPELFEQGRIRFVKTPVI-IAQV 82 Query: 338413 GSHKGEYIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGEMDADQLADTTMDPRTRML 338234 G K E+ YT ++ E A L K I Y KGLG ++ + + +P ++ Sbjct: 83 GK-KQEWFYTVAEYESAKDA--LPKHSIRY------IKGLGSLEKSEYREMIQNPVYDVV 133 Query: 338233 RRIRMEDAAQASEIFSLLMGDDVPPRKQFI 338144 + E+F +LMGD+ RK+++ Sbjct: 134 KL-----PENWKELFEMLMGDNADLRKEWM 158 >ref|YP_024726.1|gp53 Length = 377 Score = 40.8 bits (94), Expect = 0.082 Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 28/179 (15%) Frame = -3 Query: 5828 IDGLRALAILGVIAFHTRPSLLQGGF---------IGVTMFFVITGFLATRSVL---NMV 5685 ++GLRA A + V+ H ++ GG+ + V +F +I+G+L + ++ Sbjct: 8 LNGLRAFAAIWVVVAHC---MIWGGWTLTPIPDPKLAVDLFMMISGYLMAYNARLRDSVE 64 Query: 5684 DRTGSFGYGRYLIRRITRLWPVMLATI--AVVPWLTWMFAPSLLQKVVSDSLPDALFASN 5511 T + R+ IRR R+ P ++ AVV T++ +LQ + D + S Sbjct: 65 PMTRPSSWLRFYIRRYFRIAPAYYVSLVFAVVTSTTFLKGYKVLQLLNPD-----FWGSG 119 Query: 5510 WVYIFRKVPY----------FEAAGLP----SPLTHLWFLGVTMQFYLVWPLLMVVLGK 5376 +Y + Y F LP S + W L + MQFYL +P L +++ K Sbjct: 120 GIYDPSTITYTAGNLAAHVTFAFGLLPRYTFSTMLPDWSLSLEMQFYLAFPFLYILMRK 178 >ref|NP_945098.1|gp67 Length = 433 Score = 40.8 bits (94), Expect = 0.082 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = +1 Query: 281776 EANWHDENPVAGDITKVDEHDVPD-IDLLLAGFPCQPFSIAGVSKKQSMGRPTGFEDKTQ 281952 EA D+ P+ D+ D +D ++AGFPCQ S+A GR G + K Sbjct: 54 EAEAIDQAPIWSDLLTFDGAAWRGRVDCVIAGFPCQDLSVA--------GRRAGLDGKRS 105 Query: 281953 GTLFFDVARIIKAKQPKAFLLENVKNLLS 282039 G LFF VA I +LENV ++S Sbjct: 106 G-LFFRVADIADDCGAWLLVLENVSGIIS 133 >ref|NP_049875.1|gp52 topoisomerase II, medium subunit Length = 442 Score = 40.0 bits (92), Expect = 0.14 Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 17/109 (15%) Frame = +1 Query: 327394 GDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTEARLG------------ 327534 G+++ +A +A + PL+DG GNFGS AASRY AR+ Sbjct: 76 GENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFYNVYKDTEY 135 Query: 327535 ----XXXXXXXXXXXXXXXXXLLVNGGSGIAVGMATNLATHNLGEVVNA 327669 +L+NG SGIA G AT + H++ V A Sbjct: 136 APVHQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSVKKA 184 >ref|YP_024499.1|putative helicase Length = 582 Score = 39.7 bits (91), Expect = 0.18 Identities = 18/61 (29%), Positives = 36/61 (59%) Frame = -1 Query: 334147 HGSVSKDRRKMIEERLKRGELRCVVATSSLELGIDMGSVDLVIQVDTPLSVSSGLQRVGR 333968 HG + + R+ ++ G+L+ ++ATS ++ G+D+ ++ +I S+ LQR+GR Sbjct: 476 HGEIDSETRREKLNDMRSGKLKVMIATSLIDEGVDISGINALILGAGGKSLRQTLQRIGR 535 Query: 333967 A 333965 A Sbjct: 536 A 536 >ref|NP_862871.1|gp32 Length = 188 Score = 39.3 bits (90), Expect = 0.24 Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 25/179 (13%) Frame = -1 Query: 296419 ENIEQGLASPDENARLAVMLGAFCGLRRIEMTRINLKTDLEENAEGMVLHVHGKGNKERM 296240 E ++ L S E + +M G + G+R ++ + +K + E + K K + Sbjct: 14 ERMKDFLKSKSERNYVLIMCGLYSGMRISDIIPLQVKQVTGDRIEV----IEKKTGKVKR 69 Query: 296239 LPVPAKLASALRKRTGVWLFPGDVQGHCGVDYVAKRIKT----------VTGYP------ 296108 + +L AL ++ D+QG+ + K+++T V Y Sbjct: 70 FAINPELRKALNH----YIKANDLQGYDYLFPSKKKVRTDGVRIAHIGRVAAYQILKQAA 125 Query: 296107 ---------SHSLRRRFATCVYYRNGCNIVLVSRMLGHANIATTMRYIGLVQDEMRNAV 295958 +HS+R+ F Y RN N+ ++ + H++ T+ YIG+ QDE+ +++ Sbjct: 126 EHVGLKNIGTHSMRKSFGYHHYRRNQ-NVAILMELFNHSSPDITLDYIGIKQDELDDSM 183 >ref|YP_006605.1|Gp25 Length = 387 Score = 39.3 bits (90), Expect = 0.24 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Frame = +1 Query: 243505 YTRQTVEPCTRGHGKPETRMKGTIPMTTNTKTVAFVNLKGGVGKTTSAIGTAEALARLGH 243684 YT + G P R P N +A ++ KGGV KT+SA+ A+ LA GH Sbjct: 82 YTIDQISHMRNIFGNPNQR-----PADKNPAVLAVMSHKGGVYKTSSAVHEAQWLALQGH 136 Query: 243685 TV-TVRDADPSGAATLW 243732 V + DP G A+++ Sbjct: 137 RVLLIEGNDPQGTASMY 153 >ref|NP_695118.1|putative tail protein Length = 1517 Score = 38.5 bits (88), Expect = 0.41 Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 4/257 (1%) Frame = +1 Query: 188917 HGIGTPANPMGDYSTNQIARGFLDGYQTM--DLLAALYFGIVISANIRAQQVDDESQVQK 189090 + IGT A G NQ+A G + T D+ A+L ++ + + Q Sbjct: 943 NSIGTAAQKAG-VGFNQLANGVVKITNTNLGDMAASL---AAVAHGVGSISDSSAGLAQA 998 Query: 189091 ETAYAGLGTGVLLIVIYGALSYVGVVSGAIATIDPTKDTGATVLTNLTS--SLFGTFGTA 189264 A LG G+ + +GA+A + ++ + TS SL + GT+ Sbjct: 999 GAGMAQLGNGMSKVS--------ASATGAVAGLSRFTSVTTSIQSAFTSLQSLLTSAGTS 1050 Query: 189265 FLGIVFVIACLNVCTGLIGTCATYFHTRFRTVAGRTLSYRTWQVIFTVFSFIVSNAGLSA 189444 F F I + TGL +AG ++RT Q+I V S + + AGL+ Sbjct: 1051 FS--TFSIQAMQSLTGL------------SAIAGPITTFRT-QIIMIVPSLMQAAAGLNM 1095 Query: 189445 IIKVSVPVLSALYPIAIVLVLLTLTHKSLGARFPRVYFWTVLLVGIASFATCISSLVAVF 189624 V++ + ++L I V+ +L +L F + + +L + T +++ ++ Sbjct: 1096 FSTVAIGLTTSLTSIGAVMTMLATQLTTLTTSFTMMASISAML---GTSFTMMATSSSML 1152 Query: 189625 GGSIGWLDAALAMLPLQ 189675 G S ++ +L ML Q Sbjct: 1153 GTSFMTVETSLTMLNSQ 1169 >ref|NP_038305.1|ORF5 Length = 260 Score = 38.5 bits (88), Expect = 0.41 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 6/107 (5%) Frame = -3 Query: 318122 DLVFYGKTGRGKTHLAIGLGMKAID-----MGLGVRFHQTAELVLQLGKAKRDGTLET-M 317961 ++V G TG GK+HLA +KA+ MG+ + +V L K K D LE Sbjct: 121 NIVLIGNTGVGKSHLAYS-ALKALSDHTKKMGVFI------NVVDLLAKIKEDFNLEAEY 173 Query: 317960 LRDIGRADLIILDEFGYVPFDIDGARLLYQIIAGSYERRSIIFTTNI 317820 +R I A+ ++LD+ G + +LY I+ +R I TTN+ Sbjct: 174 IRRISEAEWLVLDDLGTEKVTEWSSGILYSIL---NKRTKTIITTNL 217 >ref|NP_064745.1|gp7 Length = 540 Score = 38.5 bits (88), Expect = 0.41 Identities = 52/219 (23%), Positives = 84/219 (38%), Gaps = 4/219 (1%) Frame = +2 Query: 300764 LVFASACEIVP--ARTAEALAMVRSFMANAPINAMGSVPCSTAARIMTMASAVLPSTALS 300937 LV +A E+ A TAE A A A + + A T ASA ++A S Sbjct: 81 LVAQAAAELAENNAETAEVNAEASETAAGLSATA-AATSATNAGASETAASASATASATS 139 Query: 300938 ATAKPVTCGLAVKYWLTQSSPIGLSSKSKHNCSHMA--ASSPVLPPSTDTSCCAAIGSTL 301111 AT + A + G ++ S+ N ++ A AS +T S + + Sbjct: 140 ATNSATSASQAATSASAAAVSEGNAATSETNAANSATSASGSASTATTQASAASVSATNA 199 Query: 301112 RPRFSNSPSTKLSWASGFFKSGTSSLRAPAFTSWSMILRPLTPPSCWQITTLEPFGSLAA 301291 SN+ ++ + A+ + TS A A S S T E + +A Sbjct: 200 ATSASNAATSATNAAASQAAAATSETNAAASES-------TVTTSATNAATSEANAATSA 252 Query: 301292 CLVYVTKASASFSSAFCRLTSLTTATSESNDGLTASSKA 301408 +A+ S++ ++ ATSE+N +ASS A Sbjct: 253 STATTQATNAATSASTASTSATNAATSETNAASSASSAA 291 >ref|YP_195171.1|hypothetical protein Length = 145 Score = 38.5 bits (88), Expect = 0.41 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%) Frame = -2 Query: 80454 ISIEASELLEC-----YQWTPQSPSVDEGHVREELADVLTYCIMMADALGVDMDDIVMGK 80290 I+ E E LE +Q P + E H+ EL D++ Y ALGV DD++ G Sbjct: 61 INAEGGEFLEIIKKMVFQGKPWNRDNRE-HLIIELGDIMWYVAQACIALGVSFDDVISGN 119 Query: 80289 LAKTKSKYPAAAVRDDFEEYEHRHLNARKTDD 80194 + K + +YP E++ + R DD Sbjct: 120 VKKLEKRYPGG-------EFDVFYSENRSADD 144 >ref|YP_025058.1|DnaC Length = 260 Score = 38.5 bits (88), Expect = 0.41 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 18/141 (12%) Frame = -3 Query: 318125 QDLVFYGKTGRGKTHLAIGLGMKAIDMGLGVRFHQTAELVLQLGKAKRDGTLETMLRDIG 317946 ++++ +G G GKT LA+ + D G F TAEL +G + L I Sbjct: 102 ENVILFGPRGAGKTSLALAMLTSLRDEGQSGLFISTAELSNLMGLQYDAPDVRLRLVGIE 161 Query: 317945 R----ADLIILDEFG--------YVPFDIDGARLLYQI------IAGSYERRSIIFTTNI 317820 R A +++LD+FG P D L+Y++ + R S I TTN Sbjct: 162 RAMKEAGVLLLDDFGTEGGMKLDIKPVRRDMQELIYRVANARLDFESNRPRLSTIITTNN 221 Query: 317819 EFSKWGTVFADDKLAAAIIDR 317757 E S+ ++ + KL + II + Sbjct: 222 EMSELEHMY-NSKLISRIIPK 241 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,742,941,784 Number of Sequences: 14420 Number of extensions: 36910610 Number of successful extensions: 131895 Number of sequences better than 0.5: 105 Number of HSP's better than 0.5 without gapping: 13205 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 131604 length of database: 3,019,461 effective HSP length: 129 effective length of database: 1,159,281 effective search space used: 142377096015 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Scaffold2 (155,697 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061653.1|transposase 123 4e-27 ref|NP_612994.1|hypothetical protein 93 6e-18 ref|NP_049482.1|serine 93 6e-18 ref|NP_040341.1|putative transposase 67 4e-10 ref|NP_932363.1|hypothetical protein 55 1e-06 ref|NP_046572.1|ABC transporter 55 2e-06 ref|NP_818239.1|gp188 44 0.004 ref|NP_944302.1|conserved phage protein 40 0.062 ref|NP_817650.1|gp61 40 0.081 ref|NP_861884.1|Hoc head outer capsid protein 40 0.081 ref|NP_958267.1|hypothetical protein 40 0.081 ref|YP_024843.1|Pas57 39 0.11 ref|NP_817868.1|gp17 39 0.14 ref|YP_164732.1|orf97 39 0.18 ref|NP_049793.1|Hoc head outer capsid protein 39 0.18 ref|YP_195242.1|hypothetical protein 39 0.18 ref|NP_064745.1|gp7 38 0.24 ref|YP_164758.1|orf123 38 0.31 ref|NP_705643.1|gp17 38 0.31 ref|NP_958122.1|gp17 38 0.31 ref|NP_817395.1|gp57 37 0.40 >ref|NP_061653.1|transposase Length = 328 Score = 123 bits (309), Expect = 4e-27 Identities = 64/152 (42%), Positives = 94/152 (61%), Gaps = 2/152 (1%) Frame = +3 Query: 86013 GHWEGDLITGSRNKS--AIGTLVERTTRFTILLHLPDGHDAEHVQQAIIDKMQHLPKLLR 86186 GHWE D I SR KS I T ER +R+ + +PD + ++ AI + ++HLPK Sbjct: 174 GHWEADTIVSSRGKSKGCIATFAERKSRYYYCVLMPD-RSSNSMETAINNLIKHLPKGAV 232 Query: 86187 NSLTWDQGAELALHKRIGASLDMAVYFCDPHSPWQRGTNENTNGLLRQYFPKGTDLSVYP 86366 ++T D+G E + ++ I ++ VYF DP+S WQRGTNENTNGLLR++FPK TDL+ Sbjct: 233 KTITVDRGKEFSCYQNIENQFNINVYFADPYSAWQRGTNENTNGLLREFFPKKTDLAKVN 292 Query: 86367 EDYLDAVAEELNDRPRKTLGFMKPSEKIIELL 86462 ++ L+ + +N RPRK L + P E + + L Sbjct: 293 QEQLNYALDSINYRPRKCLNWKFPYEVLCDEL 324 >ref|NP_612994.1|hypothetical protein Length = 348 Score = 93.2 bits (230), Expect = 6e-18 Identities = 72/248 (29%), Positives = 122/248 (49%), Gaps = 8/248 (3%) Frame = -1 Query: 132204 GATATVYLYNQRMPARPVAVKASAKTLDPRAAALFNREANFMAKLSSHPYILPVYGAGVT 132025 G + VYL + R A + +K K + FN EA + K +HP I+ V A Sbjct: 22 GCFSKVYLAHDRHLAHDLVIKEIEKKENTNHDDYFN-EARLLYK-HAHPNIVQVQYAA-Q 78 Query: 132024 SDGHGYIVIEYAPGGTYNSIMKARSMTCEQVLDLGIKLSSALFTAHRSNIIHHDIKPSNI 131845 + + YI + + G+ N +MK ++T +++ I+ S L+ H ++H DIKP+NI Sbjct: 79 CESNIYIAMPFYHNGSLNQLMKKNNLTSREIIRYSIQFLSGLYHIHSKGLMHFDIKPNNI 138 Query: 131844 LITSQGLPVLGDFGISTDVYDRTETGFSPPW-----APPEVLQHLTNG-SEAADIYSLAA 131683 +I+++ +L DFG+S V + E+ +P + PPE TN + DIY Sbjct: 139 MISNRNEAMLSDFGLSQLVNE--ESRAAPEFGYHFHVPPEYFSLSTNDYNFTYDIYQAGL 196 Query: 131682 TLYAMFVGCSPFQHDYHPRSQSE-LISLIVNQPLP-RLNRPDVPADVEAVLRRALNKDPD 131509 T+Y M VG F+ + S E L I+N P + P + + ++ + ++ DP+ Sbjct: 197 TIYRMCVGHDNFERERSAFSTIEQLRESIINGCYPLKEYPPHIHKKLITIVNKCIHVDPN 256 Query: 131508 QRYYSALE 131485 +RY S L+ Sbjct: 257 ERYQSVLD 264 >ref|NP_049482.1|serine Length = 348 Score = 93.2 bits (230), Expect = 6e-18 Identities = 72/248 (29%), Positives = 122/248 (49%), Gaps = 8/248 (3%) Frame = -1 Query: 132204 GATATVYLYNQRMPARPVAVKASAKTLDPRAAALFNREANFMAKLSSHPYILPVYGAGVT 132025 G + VYL + R A + +K K + FN EA + K +HP I+ V A Sbjct: 22 GCFSKVYLAHDRHLAHDLVIKEIEKKENTNHDDYFN-EARLLYK-HAHPNIVQVQYAA-Q 78 Query: 132024 SDGHGYIVIEYAPGGTYNSIMKARSMTCEQVLDLGIKLSSALFTAHRSNIIHHDIKPSNI 131845 + + YI + + G+ N +MK ++T +++ I+ S L+ H ++H DIKP+NI Sbjct: 79 CESNIYIAMPFYHNGSLNQLMKKNNLTSREIIRYSIQFLSGLYHIHSKGLMHFDIKPNNI 138 Query: 131844 LITSQGLPVLGDFGISTDVYDRTETGFSPPW-----APPEVLQHLTNG-SEAADIYSLAA 131683 +I+++ +L DFG+S V + E+ +P + PPE TN + DIY Sbjct: 139 MISNRNEAMLSDFGLSQLVNE--ESRAAPEFGYHFHVPPEYFSLSTNDYNFTYDIYQAGL 196 Query: 131682 TLYAMFVGCSPFQHDYHPRSQSE-LISLIVNQPLP-RLNRPDVPADVEAVLRRALNKDPD 131509 T+Y M VG F+ + S E L I+N P + P + + ++ + ++ DP+ Sbjct: 197 TIYRMCVGHDNFERERSAFSTIEQLRESIINGCYPLKEYPPHIHKKLITIVNKCIHVDPN 256 Query: 131508 QRYYSALE 131485 +RY S L+ Sbjct: 257 ERYQSVLD 264 >ref|NP_040341.1|putative transposase Length = 322 Score = 67.4 bits (163), Expect = 4e-10 Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 2/150 (1%) Frame = +3 Query: 86013 GHWEGDLITGSRNKSAIGTLVERTTR--FTILLHLPDGHDAEHVQQAIIDKMQHLPKLLR 86186 G E D + G +KSAI LVE+ ++ F I L + E + II K + K+ Sbjct: 173 GWLEMDTVVGKDHKSAILVLVEQLSKKYFAIKLENHTAREVEKKFKDIIIKNNLIGKI-- 230 Query: 86187 NSLTWDQGAELALHKRIGASLDMAVYFCDPHSPWQRGTNENTNGLLRQYFPKGTDLSVYP 86366 + D+ E + + + + VYFCD SP Q+ E N LR +FPKGTD + Sbjct: 231 KGIITDRRKEFSKWREMEIFAETQVYFCDAGSPQQKPLIEYMNSELRHWFPKGTDFNKVS 290 Query: 86367 EDYLDAVAEELNDRPRKTLGFMKPSEKIIE 86456 + +D V +ND+ R L ++ E ++ Sbjct: 291 QKQIDWVVNVINDKLRPCLNWISSKEMFLQ 320 >ref|NP_932363.1|hypothetical protein Length = 389 Score = 55.5 bits (132), Expect = 1e-06 Identities = 25/54 (46%), Positives = 37/54 (68%) Frame = -1 Query: 19968 DPEIAELLDSELGRQRSGLEMIASENFVPRAVLQCQGSVLTNKYAEGYPGRFYH 19807 D + +++ E RQ + +IASEN+V V++ QGS+ TNKYAEGYPG+ Y+ Sbjct: 3 DKVVQSIIEDEAMRQYCEVCLIASENYVSDDVMKAQGSIFTNKYAEGYPGKRYY 56 Score = 49.7 bits (117), Expect = 8e-05 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Frame = -1 Query: 19671 LTGGTDVHLVMVDLRNS-EMDGQQGEDLLAACGITINRNTVPFDPRPASVASGLRIGTSA 19495 L G T+ H V+++ S + G++ E LL GI +N+N +P D R SG+RIG+ A Sbjct: 303 LVGFTENHQVLLNTYESFGLTGREAEQLLEKEGIIVNKNMLPNDTRSPVETSGIRIGSPA 362 Query: 19494 LATRGFGPKEYEEV 19453 + TRG+ ++ ++ Sbjct: 363 MTTRGWVESDFYDI 376 >ref|NP_046572.1|ABC transporter Length = 705 Score = 54.7 bits (130), Expect = 2e-06 Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 3/170 (1%) Frame = -2 Query: 61301 FALRAVDFIIRPGERVLLLGASGAGKSTMMAGLAGVLGGDEEGEQEGSLTIDGVDAREAR 61122 + + ++ I+ ++VL++G SG GKST L+ + ++ L I+ D R Sbjct: 497 YIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIR 556 Query: 61121 GRVGLVLQDPD--SQIILERLGDDAAFGCENLNVPREEIWQRVRESL-DMVGLGGLELDR 60951 R+ + ++P I E L F + + I + E + ++ +L Sbjct: 557 KRIVYIDENPFLFKGTIKENLCMGEIF--DQNEIENACIMSQCHEFICNLDKQYSYKLSE 614 Query: 60950 STRHLSGGQRQRLALAGVLAMKPGLLLLDEPTANLDPEGVVEVHDAVKKV 60801 + +LS GQ+QRLALA + +P +L+LDE +N+DP+ +++ + ++ Sbjct: 615 NGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM 664 >ref|NP_818239.1|gp188 Length = 318 Score = 43.9 bits (102), Expect = 0.004 Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 1/177 (0%) Frame = -2 Query: 49415 LIIDEVQTGIGRTGKWFAFQRDDLSGGVTPDMVTFAKGVAGGFPMGGMIAFGEKLAALFT 49236 ++ DE TG GR G+ + Q + G TPD + F GG +GG+I E L F Sbjct: 139 VVADESATGFGRLGRIWGHQ----AYGFTPDAIIFGGPAGGGLTLGGVIGPAELLDDAFV 194 Query: 49235 PGSHGSTFXXXXXXXXXXXXXLDVIEDENLVANAEARGEQLRDGIMATGNPLFVSVRGRG 49056 G+ +++ E++ GE+LR + G+ L G G Sbjct: 195 GPMAGAPLACATGAATLAAINPELL--EHVREEGVTFGERLRALVDRFGDYL-ADTAGSG 251 Query: 49055 LLDAVELKHP-CSHAVMNYCLEHGLIVNAVAPNALRFAPPLIVTAQDVDQALAILKD 48888 L ++ + P + +HGL+ + + P LI + +++ + + ++ + Sbjct: 252 LYHTLDFRSPQLARKFEVSTRQHGLLTAPPVGSTVVVTPTLIASERELARGVELIAE 308 >ref|NP_944302.1|conserved phage protein Length = 532 Score = 40.0 bits (92), Expect = 0.062 Identities = 26/79 (32%), Positives = 33/79 (41%) Frame = -2 Query: 54971 PPSRHCPAACAPPTNSSPRLTPVCPNSPTMWPAS*PVWPRTTAGWAASARSTGPTPSRPC 54792 P PA P S+P TP+ P+ PA+ P P TT A S+ TP P Sbjct: 77 PDPNAAPATTQPVDMSTPTATPLPAQQPSAAPAAAPATPTTT---TTPAPSSPQTPQIPP 133 Query: 54791 AASPAVSVPQSNSTSPPPT 54735 A + S S +P PT Sbjct: 134 DAMKGTLMADSGSMAPAPT 152 >ref|NP_817650.1|gp61 Length = 274 Score = 39.7 bits (91), Expect = 0.081 Identities = 23/84 (27%), Positives = 40/84 (47%) Frame = +2 Query: 83063 DMAGSGASPVPSDADSGPRMANGAYSEALDRLAGAYVDLIKASGYEQAIWVGLSMGGYVA 83242 ++A G + DA + R + + ++ + + + A G +QA++VG SMGG + Sbjct: 46 ELAQRGFAVTALDAVNHGRTDSLPFGHTVEEMTRVTLRALDALGIDQAVFVGHSMGGGMV 105 Query: 83243 MDIQRLYPETVAGLALCDTMAASD 83314 +I YPE V L D A + Sbjct: 106 AEIAPRYPERVLAAILLDAAAGKE 129 >ref|NP_861884.1|Hoc head outer capsid protein Length = 471 Score = 39.7 bits (91), Expect = 0.081 Identities = 59/286 (20%), Positives = 102/286 (35%), Gaps = 14/286 (4%) Frame = -2 Query: 129260 AASAGT------VTFTYDISDGRGQTSSATVTVTLNDGGNHAPVQFDTPPEIDVEQGASY 129099 A+ AGT T T D +S T+TV + + V +P +++ ++ Sbjct: 58 ASPAGTKKIKVVATNTLSAGDPEIAEASTTITVNKKENNSTVAVTPASPAAVEIGTATTF 117 Query: 129098 TANALSSFNDPDGDPLTLVSAVAQNTDQVQVSTRADGQLTFNTGALASGRVGVEVTVS-- 128925 TAN N P G +A+A V+ Q TF + G + +V+ Sbjct: 118 TANV---SNQPSG------AAIAYTWKVDGVAVDGQKQSTFEYTPTSEGTKSITCSVTVT 168 Query: 128924 -----DGTATGTGMVYFSVKPANTLAAVIDPVAKTTVPNTDTVVKLSSYVHGTSLQPAQL 128760 D T + + K AN+ I P + TTV + L++ V G Sbjct: 169 ATDYVDKTVESSAVSLTVNKKANSSTLKITPESPTTV--FGVPITLTANVSG-------- 218 Query: 128759 TQVDTPNGASTTTN-AADMSLTFKATNPGTYYVPYTIAQGSIPATGLARVEVQPATGEAA 128583 P+GA+T+ + D S AT+ + P + ++ T +A Sbjct: 219 ----APSGATTSFQWSMDDSNILDATSATYKFTPTEVGSKTLKCTVSVSATNYVTKEISA 274 Query: 128582 KPVAANDIALLGADNTAIVEPLTNDVDPMGGVLSVTTVSAPADSGI 128445 + + A + ++ P N L+ + AP D+ I Sbjct: 275 EATVVTNNATFNSATISLSPPSVNTTVGGTATLTASVTGAPGDTNI 320 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 39.7 bits (91), Expect = 0.081 Identities = 56/223 (25%), Positives = 81/223 (36%), Gaps = 7/223 (3%) Frame = -3 Query: 126295 PRTPCSSPCKTAPSPRIVKLPHRLPCP*STSPSR-----HCSPP*PGNRRTARSASHGRP 126131 P T +P +T PR + P P P+R H P P R +R A+ R Sbjct: 14 PHTRTPAP-RTRAHPRAHRRVRTRPHP-HLGPARDRSPDHPEPDHPCRRAPSRPAAGPRR 71 Query: 126130 VPPMAARSPTTRSVGPVPSPERRIAVPSPHARSLV*RTAKPIPSPSPREMTSAGPSRPPP 125951 PP+A P TR+ P P + +P + P+ PR + Sbjct: 72 HPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRPRAPECDRGAHHLR 131 Query: 125950 SKPHRTRCR--PLPPMLRSRVAIKPPR*RGKRRAVISAPSITIR*PSPVQVLRRPRKPAI 125777 ++ RTR R PL P R R ++ R +RR + R V R R+ Sbjct: 132 TRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGR 191 Query: 125776 RPPSCRLRSTTTTFPMAPPLRRPSKPITKSIGVPSPPHRRQRR 125648 R R+R+ P RRP +++ RR RR Sbjct: 192 R---VRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRRHRR 231 Score = 38.9 bits (89), Expect = 0.14 Identities = 72/299 (24%), Positives = 93/299 (31%), Gaps = 26/299 (8%) Frame = -3 Query: 126502 RWHASATRR*RSRPVPAMP*TCLPARTIRSPIPR*PSSAARRMTXXXXXXXXXXXPETSP 126323 R H A RR R+RP P + PAR RSP P Sbjct: 24 RAHPRAHRRVRTRPHPHLG----PARD-RSP--------------------------DHP 52 Query: 126322 SPSHPMWVLPRTPCSSPCKTAPSPRIVKLPHRLPCP*STSPSRH-----CSPP*PGNRRT 126158 P HP P P + P + P R C P+ H C+P P Sbjct: 53 EPDHPCRRAPSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEY 112 Query: 126157 A-----RSASHGRPVPPMAARSPTTRSVGPVPSPERRIAVPSPHARSLV*RTAKPIPSPS 125993 A R+ R + R+P TR+ P R+ P R R +P P Sbjct: 113 APALRPRAPECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRR-TRRRRRPDPRRR 171 Query: 125992 PREMTSAG----------------PSRPPPSKPHRTRCRPLPPMLRSRVAIKPPR*RGKR 125861 + G +RP P R R RP P R A++P R G+R Sbjct: 172 VQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPR---AVRPRRRTGRR 228 Query: 125860 RAVISAPSITIR*PSPVQVLRRPRKPAIRPPSCRLRSTTTTFPMAPPLRRPSKPITKSI 125684 R+ ++RP R RST PM PL +T I Sbjct: 229 HR---------------------RRASLRPRHRRHRSTP---PMNTPLTLAGLALTAVI 263 >ref|YP_024843.1|Pas57 Length = 305 Score = 39.3 bits (90), Expect = 0.11 Identities = 26/87 (29%), Positives = 41/87 (47%) Frame = +2 Query: 9905 MTRMRIGPNIESVSLGCLSLRNTAMRLATVSARGLRRSCGRVSQASSWAMSFGSPSYQER 10084 ++R+ G + S++ S +A A+ SA + S ++S + S + + Sbjct: 174 VSRISFGGEVYSLTCAPPSTSTSASASASTSASASASTSASASTSASASASTSASASSSA 233 Query: 10085 SEPTVSSASRPEATTSTTGLPGLPATP 10165 S T SAS P TTSTT PG+ TP Sbjct: 234 SPSTTGSAS-PSTTTSTTAAPGITTTP 259 >ref|NP_817868.1|gp17 Length = 221 Score = 38.9 bits (89), Expect = 0.14 Identities = 34/118 (28%), Positives = 45/118 (38%) Frame = -3 Query: 51730 PNIRSTASTWTAACPPTTRSCYSPPVPPASNRTRTNSTSWCVRPASPCPARSSATAKVPP 51551 P + T + P R SP A+ T T P + PA + V P Sbjct: 100 PEVGGTLTVTFTHVTPPDRPGMSPSKHFAATYTPPPVTGGYFAPPAGAPAPA-----VTP 154 Query: 51550 TTFASPSPVPPAKTRHLPVVVPSPPRTCSSAPSPATIRTGAASSAPWARCRLKSRLTI 51377 A P+PVPPA + P P T AP P ++ A S A WA +R T+ Sbjct: 155 GAPAQPAPVPPAVQQAFPGATQVPQPTV--APEP--VKPAAISDAAWAAMDAATRATV 208 >ref|YP_164732.1|orf97 Length = 2112 Score = 38.5 bits (88), Expect = 0.18 Identities = 84/409 (20%), Positives = 164/409 (40%), Gaps = 15/409 (3%) Frame = -2 Query: 127022 IESADSVSATKASNSDFYVNDKTLKFTAAKDY-AGPASITFTAVDGKQGSDKTKII--NS 126852 + S +V ++A +++ D T + KD+ P + T + + S I NS Sbjct: 598 LTSQYNVILSRAKDANISTTDLTTAYNNLKDFMTNPLADTSNSSSIDRASYNKLIFYYNS 657 Query: 126851 AVITLQITVIGRDVPPPTFSSSTIDVEAGADPKTVDLTALTHAPSGVYDDEKQYTYSGGS 126672 A+ +Q+ + ++++ ++++ +V + + + + + + T S Sbjct: 658 ALSDVQMELRN------SYNNDISNMQS-----SVSVASQAASSAAIVASQATTTGDNAS 706 Query: 126671 SSSRQITANLSRSGSLQVSATKDAAPGTTASIPVQIAYGAGTVNAGVTVRVVSSTRPLAR 126492 ++ Q A +++ + SAT+ A + A+ IA +VNA V V + + Sbjct: 707 YAAAQALATANQAQTAGDSATRVANNASQAASGAVIAGSTASVNADKAVSVANQAK---S 763 Query: 126491 VGDKTLKIKAGASDAVN--VLTGAYNPFPDSSLTVISCKADDAAKLTIAGCDASGNVTIA 126318 GD ++ AS A + +L G S+ TVI+ KA A ++G+ + Sbjct: 764 AGDNATRVANNASQAASGAILAG-------STATVIANKASTVAN----EAKSAGDNATS 812 Query: 126317 VASDVGASTNTVLVTVQDGTKSKDREV---TASITVSVIDKPEPPLLSPVAGEPQDSAVS 126147 VA++ + N+ T + E+ + +IT + + G + ++ Sbjct: 813 VANNATSVANSAKSTADSTYAYANSEIAVQSTAITKAQSTADNAFSQAQAVGSQASAEIA 872 Query: 126146 LTWTPGAANGSPITNYKVSWTGAVTGEKDCGAVTSCQVTGLKNGKTYSFTVAARNDVGWS 125967 + A S N T A+ D G VTS VT LK+G T+A + + Sbjct: 873 VQSNATAKAQSTADNAFSKATTAI----DNGKVTSQAVTDLKDGS--KLTIAELENGLAT 926 Query: 125966 KPSTAVEATPDKVPSAPTDVTVTGGNKTAKVTW-------KAPSGDFSA 125841 K + + A+ + ++ VT G +A T K + DFSA Sbjct: 927 KVANSDYASYKEQTASQIGQLVTNGAFSAYQTQTADLIASKVATKDFSA 975 >ref|NP_049793.1|Hoc head outer capsid protein Length = 376 Score = 38.5 bits (88), Expect = 0.18 Identities = 60/282 (21%), Positives = 109/282 (38%), Gaps = 26/282 (9%) Frame = -2 Query: 126752 TVDLTALTHAPSGVYDDEKQYTYS------GGSSSSRQITANLSRSGSLQVSATKDAAPG 126591 TVD+T T P+GV D+ KQ+T + GG+ + N+ + G+ + P Sbjct: 4 TVDITPKT--PTGVIDETKQFTATPSGQTGGGTITYAWSVDNVPQDGAEATFSYVLKGPA 61 Query: 126590 TTASIPVQIAY-----GAGTVNAGVTVRVVSSTR----------PLARVGDKTLKIKAGA 126456 +I V G T A T+ V + T+ P A V ++ A Sbjct: 62 GQKTIKVVATNTLSEGGPETAEATTTITVKNKTQTTTLAVTPASPAAGVIGTPVQFTAAL 121 Query: 126455 SDAVNVLTGAYNPFPDSSLTVISCKADDAAKLTIAGCDASGNVTIAVASDVGA---STNT 126285 + + + Y + D S + + T +G V A+D A ++N Sbjct: 122 ASQPDGASATYQWYVDDSQVGGETNSTFSYTPTTSGVKRIKCVAQVTATDYDALSVTSNE 181 Query: 126284 VLVTVQDGTKSKDREVTASITVSVIDKPEPPLLSPVAGEPQDSAVSLTWTPGAANGSPIT 126105 V +TV T + +T +++V + V G P+++ ++ +W ++ T Sbjct: 182 VSLTVNKKTMNPQVTLTPP-SINVQQDASATFTANVTGAPEEAQITYSWKKDSSPVEGST 240 Query: 126104 NYKVSWTGAVTGE--KDCGAVTSCQVTGLKNGKTYSFTVAAR 125985 N T +V + + VT+ + KT + TV A+ Sbjct: 241 NVYTVDTSSVGSQTIEVTATVTAADYNPVTVTKTGNVTVTAK 282 >ref|YP_195242.1|hypothetical protein Length = 1167 Score = 38.5 bits (88), Expect = 0.18 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Frame = -2 Query: 80783 SSSSADLGTTVPAGEVQSWAHQYLLDN----GYSEADFTAANYIINHESGWSPTATNPTS 80616 ++SS+ T +P GE ++ LL G+++ + A + ESG+ ATNPTS Sbjct: 885 AASSSVPVTGIPLGESETAQASQLLSGLVQRGFTKEESAAIVGNLWAESGFRTGATNPTS 944 Query: 80615 GAYGLGQAYPGSK 80577 GAYGL Q G K Sbjct: 945 GAYGLMQWLGGRK 957 >ref|NP_064745.1|gp7 Length = 540 Score = 38.1 bits (87), Expect = 0.24 Identities = 110/502 (21%), Positives = 184/502 (36%), Gaps = 12/502 (2%) Frame = -2 Query: 127019 ESADSVSATKASNSDFYVNDKTLKFTAAKDYAGPASITFTAVDGKQGSDKTKIINSAVIT 126840 E A++ + T N++ L TAA A A + TA + T NSA Sbjct: 88 ELAENNAETAEVNAEASETAAGLSATAAATSATNAGASETAASASATASATSATNSATSA 147 Query: 126839 LQITVIGRDVPPPTFSSSTIDVEAGADPKTVDLTALTHAPSGVYDDEKQYTYSGGSSSSR 126660 Q S+S V G + T + A A S SG +S++ Sbjct: 148 SQAAT----------SASAAAVSEG-NAATSETNAANSATSA----------SGSASTAT 186 Query: 126659 QITANLSRSGSLQVSATKDAAPGTTASIPVQIAYGAGTVNAGVTVRVVSSTRPLARVGDK 126480 + S S + ++ +AA T + Q A NA + V+++ A + Sbjct: 187 TQASAASVSATNAATSASNAATSATNAAASQAAAATSETNAAASESTVTTSATNAATSE- 245 Query: 126479 TLKIKAGASDAVNVLTGAYNPFPDSSLTVISCKADDAAKLTIAGCDASGNVTIAVASDVG 126300 A A+ + + T S+ T + + A T A AS + A ++ Sbjct: 246 -----ANAATSASTATTQATNAATSASTASTSATNAATSETNAASSASSAASSATSAQ-- 298 Query: 126299 ASTNTVLVTVQDGTKSKDREVTASITVSVIDKPEPPLLSPVAGEPQDSAVSLTWTPG--- 126129 AS + L + DR + ++ +D L VAG A+ T G Sbjct: 299 ASKDAALAALD---SFDDRYLGQKVSDPTLDNDGNAL---VAG-----ALYFNTTDGIMK 347 Query: 126128 AANGSPITNYKVSWTGAVTGEKDCGAVTSCQVTGLKNGKTYSFTVAARNDVGWSKPSTAV 125949 +GS S +GA+ + V + G + T A+ + ++ + AV Sbjct: 348 VYDGSVWLAAYASLSGALIATNNLSDVLDVTASRTNLGLGTAATTASTDYATAAQGALAV 407 Query: 125948 EAT-PDKVPSAPTDVTVTGGNKTAKVTWKAPSGDFSAVDNYSVTVTGAGAPQTKE---TG 125781 A P+ PS + VTVTG V + + D S +D GA A QT T Sbjct: 408 SAVQPNDSPSFGS-VTVTG-----TVDGRNVAADGSKLDGIE---AGATADQTASEILTS 458 Query: 125780 NTATELSFTFNNNDISDGTAITATVKAHNKINWSAESAASPSEKIWGD--PDAPNIALSN 125607 + S + + D+ DG ++ ++ + I S + + S + I D+ N ++N Sbjct: 459 IKTVDGSGSGLDADLLDGIHASSFLQGNQTITLSGDVSGSGTTSILVTVADDSHNHIIAN 518 Query: 125606 DD---TTVTAKVTLGNNRNAGC 125550 D T + K + G + GC Sbjct: 519 VDGLQTALDGKWSKGADIGGGC 540 Score = 37.4 bits (85), Expect = 0.40 Identities = 61/277 (22%), Positives = 101/277 (36%), Gaps = 5/277 (1%) Frame = -2 Query: 126371 AAKLTIAGCDASGNVTIAVASDVGASTNTVLVTVQDGTKSKDREVTASITVSVIDKPEPP 126192 A L I G D +V A A+ + A L ++ ++ + AS T + + Sbjct: 59 ATGLLINGTDYLADVEAAKAAALVAQAAAELA--ENNAETAEVNAEASETAAGLSATAAA 116 Query: 126191 LLSPVAGEPQDSA-VSLTWTPGAANGSPITNYKVSWTGAVTGEKDCGAVTSCQVTGLKNG 126015 + AG + +A S T + +A S + + + + + + A TS T N Sbjct: 117 TSATNAGASETAASASATASATSATNSATSASQAATSASAAAVSEGNAATS--ETNAANS 174 Query: 126014 KTYSFTVAARNDVGWSKPSTAVEATPDKVPSAPTDVTVTGGNKTAKVTWKAPSGDFSAVD 125835 T + A+ S S + +A T T ++ A T + + + Sbjct: 175 ATSASGSASTATTQASAASVSATNAATSASNAATSATNAAASQAAAATSETNAAASESTV 234 Query: 125834 NYSVTVTGAGAPQTKETGNTATELSFTFNNNDISDGTAITATVKAHNKINWSAESAASPS 125655 S T + +TAT + + + T+ T + SA SAAS + Sbjct: 235 TTSATNAATSEANAATSASTATTQATNAATSASTASTSATNAATSETNAASSASSAASSA 294 Query: 125654 EKIWGDPDAPNIAL-SNDDTTVTAKV---TLGNNRNA 125556 DA AL S DD + KV TL N+ NA Sbjct: 295 TSAQASKDAALAALDSFDDRYLGQKVSDPTLDNDGNA 331 >ref|YP_164758.1|orf123 Length = 599 Score = 37.7 bits (86), Expect = 0.31 Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 11/169 (6%) Frame = -1 Query: 7965 PRTLEMAVTGIREMSTLATPPED---RLPVLTYVGAYEDAQ-----VTAAVRRELLRGGQ 7810 P LE VT EM+ P ++ R + +G E++ A + L G Sbjct: 409 PDNLEEIVTN--EMAAANVPVDNGLFRYQFVNRIGIVENSSRNKYIAELATKLSDLNNGA 466 Query: 7809 VFYVHNRVQDISSIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTII 7630 V+ N ++ +IA+ + L + I G +++ +I++ D+ V++ + ++ Sbjct: 467 VYIAFNNIEHGENIAEFLDELGTD--YVIMQGSTSDEERQEILKGLVSGDVRVILGSKVL 524 Query: 7629 ETGLDISNANTLIVDHADRFGLSQLHQLRGRV---GRGRERAYAYFLYD 7492 + G+ + L+ + + Q+ Q GR+ G G+ER Y Y D Sbjct: 525 DEGVSVPTLKYLLYVSGGQSEI-QVGQRVGRILRLGSGKERVYVYDFQD 572 >ref|NP_705643.1|gp17 Length = 695 Score = 37.7 bits (86), Expect = 0.31 Identities = 42/135 (31%), Positives = 52/135 (38%), Gaps = 1/135 (0%) Frame = +2 Query: 84560 GAAVRPALAGWAQRCTNEADGSRVLFPRVEPAVITAIVDGHDRLLLQHNAAWNDSRLYSV 84739 GA P +A G++ R AV +VDG L+ + W + Sbjct: 549 GATAPPTVANVNANVNPREAGAQDAAMRAAGAVY--VVDGKVLLMKRPAGDWG------L 600 Query: 84740 SAGFVEAGENLEHACRREAMEETGIKL-GEVRYLGSQPWPFPASLMMAFKAHAITTDVHV 84916 AG VE E E A RRE EETG GE+ LG AF AH DV + Sbjct: 601 PAGKVEGNETPEEAARRETREETGYDHDGELVPLGKFD-----GFFHAFVAHLEPFDVEL 655 Query: 84917 DGEETMTARWVTRDE 84961 + E T W DE Sbjct: 656 NDEHT-AFDWFNPDE 669 >ref|NP_958122.1|gp17 Length = 694 Score = 37.7 bits (86), Expect = 0.31 Identities = 42/135 (31%), Positives = 52/135 (38%), Gaps = 1/135 (0%) Frame = +2 Query: 84560 GAAVRPALAGWAQRCTNEADGSRVLFPRVEPAVITAIVDGHDRLLLQHNAAWNDSRLYSV 84739 GA P +A G++ R AV +VDG L+ + W + Sbjct: 548 GATAPPTVANVNANVNPREAGAQDAAMRAAGAVY--VVDGKVLLMKRPAGDWG------L 599 Query: 84740 SAGFVEAGENLEHACRREAMEETGIKL-GEVRYLGSQPWPFPASLMMAFKAHAITTDVHV 84916 AG VE E E A RRE EETG GE+ LG AF AH DV + Sbjct: 600 PAGKVEGNETPEEAARRETREETGYDHDGELVPLGKFD-----GFFHAFVAHLEPFDVEL 654 Query: 84917 DGEETMTARWVTRDE 84961 + E T W DE Sbjct: 655 NDEHT-AFDWFNPDE 668 >ref|NP_817395.1|gp57 Length = 287 Score = 37.4 bits (85), Expect = 0.40 Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Frame = -3 Query: 54049 SAGWPAVWSAAGVARQSAGGRLAVRSRRPTVRSGRIS---GRVPGHAGPAVWSTAERSAS 53879 SA W A WSAAG A +SA G A + S S AG A WS A +A Sbjct: 151 SAAWSAAWSAAGSAARSAAGSAAGSAAWSAAGSAAWSAAWSAAESAAGSAAWSAAWSAAG 210 Query: 53878 PAA 53870 AA Sbjct: 211 SAA 213 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 760,385,549 Number of Sequences: 14420 Number of extensions: 16312556 Number of successful extensions: 60483 Number of sequences better than 0.5: 21 Number of HSP's better than 0.5 without gapping: 11331 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 60330 length of database: 3,019,461 effective HSP length: 124 effective length of database: 1,231,381 effective search space used: 63753519894 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Scaffold3 (150,521 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_665964.1|putative plasmid partitioning protein Soj 119 8e-26 ref|NP_046923.1|gp28 75 2e-12 ref|YP_006528.1|ParA 74 3e-12 ref|NP_892074.1|partitioning protein SpyA 74 3e-12 ref|NP_945240.1|integrase 74 5e-12 ref|YP_006605.1|Gp25 73 8e-12 ref|NP_795489.1|putative integrase 69 2e-10 ref|NP_817502.1|gp53 66 8e-10 ref|NP_061531.1|integrase 65 1e-09 ref|NP_665963.1|putative site specific recombinase Int2 65 2e-09 ref|NP_862840.1|gp1 63 7e-09 ref|NP_076752.1|integrase 63 9e-09 ref|NP_758949.1|ORF58 60 7e-08 ref|NP_076780.1|integrase 59 1e-07 ref|NP_599058.1|integrase 59 2e-07 ref|NP_046572.1|ABC transporter 58 2e-07 ref|NP_059584.1|Int 58 3e-07 ref|YP_006360.1|Int 57 4e-07 ref|NP_040813.1|integrase 57 4e-07 ref|NP_720278.1|Int 57 5e-07 ref|NP_536628.1|Int 57 6e-07 ref|NP_663635.1|putative integrase 55 2e-06 ref|NP_076635.1|integrase 55 2e-06 ref|NP_050999.1|P38 55 2e-06 ref|NP_795396.1|site-specific recombinase 54 3e-06 ref|NP_076801.1|integrase 54 4e-06 ref|NP_046786.1|Int 54 5e-06 ref|NP_852580.1|DNA integration 53 9e-06 ref|NP_795660.1|putative integrase 52 1e-05 ref|NP_817384.1|gp46 52 1e-05 ref|NP_878228.1|Int 52 1e-05 ref|NP_839878.1|Int 52 1e-05 ref|NP_803307.1|integrase 52 2e-05 ref|NP_052278.1|Int 51 3e-05 ref|NP_852561.1|DNA integration 51 3e-05 ref|NP_852723.1|putative integrase 51 3e-05 ref|NP_795429.1|putative integrase 50 4e-05 ref|NP_075464.1|integrase 50 4e-05 ref|NP_058467.1|integrase 50 4e-05 ref|NP_663691.1|putative holin 50 6e-05 ref|NP_958084.1|gp27 50 6e-05 ref|NP_612851.1|putative integrase 50 6e-05 ref|NP_817718.1|gp41 49 1e-04 ref|NP_835731.1|similar to RNA polymerase ECF-type sigma factor 49 2e-04 ref|NP_612875.1|putative recombinase 49 2e-04 ref|NP_076698.1|repressor 49 2e-04 ref|NP_695031.1|Repressor 48 3e-04 ref|NP_438114.1|integrase-like protein 47 4e-04 ref|NP_795541.1|putative integrase 47 4e-04 ref|NP_116527.1|cI repressor 47 4e-04 ref|NP_695029.1|Integrase 47 4e-04 ref|NP_536807.1|integrase 47 5e-04 ref|NP_043466.1|integrase 47 5e-04 ref|NP_108682.1|cI2009 47 5e-04 ref|NP_150133.1|integrase 47 6e-04 ref|NP_511007.1|integrase 47 6e-04 ref|NP_996677.1|phage repressor 47 6e-04 ref|NP_996675.1|integrase 47 6e-04 ref|NP_076573.1|integrase 47 6e-04 ref|NP_116524.1|integrase 46 8e-04 ref|NP_108680.1|integrase 46 8e-04 ref|NP_818386.1|gp85 45 0.001 ref|NP_945090.1|gp59 45 0.001 ref|YP_025047.1|putative integrase 45 0.001 ref|NP_599074.1|unknown 44 0.004 ref|YP_164382.1|integrase 44 0.004 ref|NP_777346.1|hypothetical protein 44 0.005 ref|NP_680502.1|integrase 43 0.007 ref|NP_076696.1|integrase 43 0.007 ref|NP_543063.1|putative lambda repressor 43 0.009 ref|NP_049990.1|integrase 42 0.012 ref|NP_046638.1|unknown 42 0.012 ref|NP_958623.1|77ORF007 42 0.012 ref|NP_695079.1|putative integrase 42 0.016 ref|NP_720299.1|C2 42 0.016 ref|NP_624303.1|integrase fragment 42 0.016 ref|NP_835517.1|integrase 42 0.021 ref|NP_061591.2|integrase 42 0.021 ref|NP_803254.1|integrase 42 0.021 ref|NP_705643.1|gp17 42 0.021 ref|NP_958122.1|gp17 42 0.021 ref|NP_803356.1|integrase 41 0.027 ref|NP_944326.1|gp18 41 0.035 ref|NP_510895.1|similar to phage phi 11 integrase 40 0.060 ref|NP_059606.1|C2 40 0.079 ref|NP_858969.1|conserved phage protein; central region similar ... 39 0.10 ref|NP_862871.1|gp32 39 0.13 ref|NP_695147.1|integrase 39 0.13 ref|NP_665954.1|unknown 39 0.18 ref|YP_024843.1|Pas57 39 0.18 ref|YP_024421.1|Hypothetical protein 37 0.39 ref|NP_835522.1|similar to repressor 37 0.39 ref|NP_803311.1|cI-like repressor 37 0.39 ref|NP_851940.1|putative integrase 37 0.39 >ref|NP_665964.1|putative plasmid partitioning protein Soj Length = 256 Score = 119 bits (298), Expect = 8e-26 Identities = 65/179 (36%), Positives = 106/179 (59%), Gaps = 4/179 (2%) Frame = -1 Query: 41276 IAMCNQKGGVGKTTSSINIAGALAQYGRRVLIVDFDPQGAATVGLGVNANTVENTIYTAL 41097 I + NQKGG GKTT+++N+AGAL Q G VL++D DPQG AT GLG + ++ +L Sbjct: 3 IGVTNQKGGAGKTTTTLNVAGALNQLGNDVLVIDLDPQGHATEGLGFE-DLYDDPERDSL 61 Query: 41096 FDI--SVDPHDVVQHTAFEN--IDVIPANIDLSAAEVQLVTEVGREQILNSVLRKLKSEY 40929 FD+ ++ D ++ E+ +D +P++ + AE L + RE+ L +L + Sbjct: 62 FDVLPELERMDELEQLVVEHQEVDCVPSHETMINAEDALANVMKREERLEMLLDDADGRW 121 Query: 40928 DLIIVDCQPSLGLLTVNALAAADGVIIPVAAEFFALRGVALLMQSIEKVQSRINPALEV 40752 D ++VDC P+LG+LT NA+ A V+IP A+ ++R + LL + + ++S P E+ Sbjct: 122 DYVLVDCPPNLGVLTDNAIVATGNVLIPAQAKSTSIRAIELLFKQLRSIESAFGPVDEL 180 >ref|NP_046923.1|gp28 Length = 387 Score = 74.7 bits (182), Expect = 2e-12 Identities = 67/271 (24%), Positives = 118/271 (43%), Gaps = 32/271 (11%) Frame = -1 Query: 41435 RQGTLPMAGTYVVAPPANPDVDKVDSMPT-----------------DLLGREYETFPAPE 41307 R G +A V P A D +K +P D + F P Sbjct: 39 RWGITEVADLIGVTPQAIRDAEKAGRLPAPDFEMRGRVERRAGYTIDQISHMRSVFGNPN 98 Query: 41306 PLQQHGPARVIAMCNQKGGVGKTTSSINIAGALAQYGRRVLIVDF-DPQGAATVGLGVNA 41130 V+++ + KGGV KT+S+++ A LA G RVL+V+ DPQG A++ G Sbjct: 99 QRPDDKNPVVLSVMSHKGGVYKTSSAVHQAQWLALQGHRVLLVEGNDPQGTASMYHGYVP 158 Query: 41129 NT---VENTIYTALFDISVDPHDVVQHTAFENIDVIPANIDLSAAEVQLVTEVGREQI-- 40965 + ++T+ + ++ T + +D+IP+ + L E L+ ++ Sbjct: 159 DLHIHADDTLLPFYLGKRDNAEYAIKPTCWPGLDIIPSCLALHRIETDLMQYHSEGKLPH 218 Query: 40964 -----LNSVLRKLKSEYDLIIVDCQPSLGLLTVNALAAADGVIIPVAAEFF----ALRGV 40812 L + + + YD+I++D P+LG T+N + AAD +++ AE F L+ Sbjct: 219 PPHLMLRAAIESVWDNYDIIVIDSAPNLGTGTINVVCAADVIVVATPAELFDYASVLQFF 278 Query: 40811 ALLMQSIEKVQSRINPALEVDGVLITMYTKT 40719 +L+ +E V + V +L+T Y+ T Sbjct: 279 TMLLDLLETVD--LGGFEPVVRLLLTKYSLT 307 >ref|YP_006528.1|ParA Length = 398 Score = 74.3 bits (181), Expect = 3e-12 Identities = 56/184 (30%), Positives = 97/184 (52%), Gaps = 21/184 (11%) Frame = -1 Query: 41330 YETFPAPEPLQQHGPARVIAMCNQKGGVGKTTSSINIAGALAQYGR------RVLIVDFD 41169 YE P+ ++ A VI + N KGGV KT S++++A A+ + R+L++D D Sbjct: 93 YEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLD 152 Query: 41168 PQGAATVGLG-------VNANTVENTIYTALFDISVDPHDVVQHTAFENIDVIPANID-- 41016 PQ +AT+ L VNA + + + + ++ + + + +DV+PA+ID Sbjct: 153 PQSSATMFLSHKHSIGIVNATSAQAMLQNVSREELLE--EFIVPSVVPGVDVMPASIDDA 210 Query: 41015 -LSAAEVQLVTEVGREQILNSVLR-----KLKSEYDLIIVDCQPSLGLLTVNALAAADGV 40854 +++ +L E Q +++VL+ KLKS+YD I+VD P L NALA+A+ + Sbjct: 211 FIASDWRELCNEHLPGQNIHAVLKENVIDKLKSDYDFILVDSGPHLDAFLKNALASANIL 270 Query: 40853 IIPV 40842 P+ Sbjct: 271 FTPL 274 >ref|NP_892074.1|partitioning protein SpyA Length = 389 Score = 74.3 bits (181), Expect = 3e-12 Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 11/162 (6%) Frame = -1 Query: 41279 VIAMCNQKGGVGKTTSSINIAGALAQYGRRVLIVDF-DPQGAATVGLGVNANT---VENT 41112 V+A+ KGG KT++S++ A LA G RVL++D DPQ A++ G + + T Sbjct: 108 VLAIAAHKGGAYKTSTSVHTAQWLALQGLRVLLIDATDPQATASLYHGYVPDLHIHEDET 167 Query: 41111 IYTALFDISVDPHDVVQHTAFENIDVIPANIDLSAAEVQLVT-------EVGREQILNSV 40953 + D ++ T + N+D+IP+ + + E +L V +L + Sbjct: 168 LLPYYLGERDDAMYAIKPTCWPNLDIIPSCLAIHRIESELYPLHDAEKLPVAPHMMLRAA 227 Query: 40952 LRKLKSEYDLIIVDCQPSLGLLTVNALAAADGVIIPVAAEFF 40827 + + YD++++D P+LG+ T+N + AAD +++P AE + Sbjct: 228 IESVWDSYDVVVLDSAPNLGIGTINVVCAADVIVVPTPAELY 269 >ref|NP_945240.1|integrase Length = 380 Score = 73.6 bits (179), Expect = 5e-12 Identities = 69/272 (25%), Positives = 114/272 (41%), Gaps = 29/272 (10%) Frame = -3 Query: 45372 ITKQDVEDYIAALDQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTL 45193 ++K D + + LD+ S K R + ++ +A+ + + + K P+ TL Sbjct: 105 VSKIDPKYVQSYLDRLDCSRNKKERNKSMLNLAFDYAIDLGIIKDNPARRAKLPRVQKTL 164 Query: 45192 PD-------VLTVDEVTRLLDAAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDD 45034 D L DE+ LL ST + L L EFM GCR+ EA G + Sbjct: 165 EDWKKVGQKYLEEDEIKLLLKELYRRPSTYRIGL----LSEFMSLNGCRIGEAVGIEPHN 220 Query: 45033 IDLDEHIARLMG---------KGSKQRLVPLGSYACRAITA----------YLNAGRGEL 44911 +D + + +L G KG K L SY +T ++N EL Sbjct: 221 VDYESNTLQLHGTYDHTNGYQKGEKTSPKTLASYRETVMTTREKEILEEMEFMN----EL 276 Query: 44910 EQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGER--AGITKPLHPHTLRHSFATHL 44737 E+ ++ + + +F K G + S +K ER I K L H RH+ + L Sbjct: 277 EKNTNPRYKDMGFIFTTKNGVPLQTNSFNLALKKANERLETPIQKNLTSHIFRHTLVSRL 336 Query: 44736 IQGGADVRTVQELLGHASV-TTTQIYTHVSPE 44644 + ++ + + +GH+ TTTQIYTH++ + Sbjct: 337 AENNVPLKAIMDRVGHSDAKTTTQIYTHITKQ 368 >ref|YP_006605.1|Gp25 Length = 387 Score = 72.8 bits (177), Expect = 8e-12 Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 28/231 (12%) Frame = -1 Query: 41435 RQGTLPMAGTYVVAPPANPDVDKVDSMPT-----------------DLLGREYETFPAPE 41307 R G +A V+P A D +K +P D + F P Sbjct: 39 RWGITEVADLIGVSPQAIRDAEKNGRLPPPDFELRGRVERRAGYTIDQISHMRNIFGNPN 98 Query: 41306 PLQQHGPARVIAMCNQKGGVGKTTSSINIAGALAQYGRRVLIVDF-DPQGAATVGLGVNA 41130 V+A+ + KGGV KT+S+++ A LA G RVL+++ DPQG A++ G Sbjct: 99 QRPADKNPAVLAVMSHKGGVYKTSSAVHEAQWLALQGHRVLLIEGNDPQGTASMYHGYVP 158 Query: 41129 NT---VENTIYTALFDISVDPHDVVQHTAFENIDVIPANIDLSAAEVQLVTEVGREQI-- 40965 + ++T+ + ++ T + +D+IP+ + L E L+ + ++ Sbjct: 159 DLHIHADDTLLPFYLGERDNAEYAIKPTCWPGLDIIPSCLALHRIETDLMQYHAQGKLPH 218 Query: 40964 -----LNSVLRKLKSEYDLIIVDCQPSLGLLTVNALAAADGVIIPVAAEFF 40827 L + + + YD+I++D P+LG T+N + AAD +++ AE F Sbjct: 219 PPHLMLRAAIESVWDNYDIIVIDSAPNLGTGTINVVCAADIIVVATPAELF 269 >ref|NP_795489.1|putative integrase Length = 380 Score = 68.6 bits (166), Expect = 2e-10 Identities = 72/265 (27%), Positives = 110/265 (41%), Gaps = 29/265 (10%) Frame = -3 Query: 45357 VEDYIAALDQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPD--- 45187 V++Y+ LD S K R + ++ +A+G + + + K P+ TL D Sbjct: 113 VQNYLDNLDC---SRNKKERNKSMLNLAFDYAVGLDIIQDNPARRAKLPRVKKTLEDWKK 169 Query: 45186 ----VLTVDEVTRLLDAAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDE 45019 L DE+ LL ST + L L EF+ GCR+ EA + + Sbjct: 170 AEEKYLEEDEIKPLLKELYRRPSTYRLGL----LAEFISLNGCRIGEAVSIEPCNYESKS 225 Query: 45018 HIARLMG---------KGSKQRLVPLGSYACRAITA----------YLNAGRGELEQRSS 44896 I +L G G K L SY +T+ ++N ELE+ ++ Sbjct: 226 RILQLHGTFDHTEGYRNGEKTAPKTLASYRETIMTSRELEILQELEFMN----ELEKNTN 281 Query: 44895 AKIPERRALFLNKRGKRISRQSVWEIVKATGERAG--ITKPLHPHTLRHSFATHLIQGGA 44722 + + LF K G I S +K ER ITK L H RH+ + L + Sbjct: 282 HRYRDMGYLFTTKNGVPIQTNSFNLALKKANERLEDPITKKLTSHIFRHTLISRLAENNV 341 Query: 44721 DVRTVQELLGHASV-TTTQIYTHVS 44650 ++++ E +GHA TT QIYTHV+ Sbjct: 342 PLKSIMERVGHADAKTTAQIYTHVT 366 >ref|NP_817502.1|gp53 Length = 293 Score = 66.2 bits (160), Expect = 8e-10 Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 1/165 (0%) Frame = -2 Query: 25540 TAESQRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVT-GKGNKQRVVPFGLPAQR 25364 T +R+ A++ L TGIR AE++++D+ D+ + + V GKG K R V + Sbjct: 126 TFRDRRDKALIVLFTETGIRAAEMLALDVEDVSLVDCQLTVRRGKGAKGRRVKYSPMCAA 185 Query: 25363 ALETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDIS 25184 ++ +L R + L++G GGR+ + + R A +AGVP Sbjct: 186 TIDKYLRARR---------RAGHGSEGPLWIGL-GGRLSYTGMKSSLKRRADDAGVPGFH 235 Query: 25183 PHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQL 25049 PH LRH++A L G + G S + RY + E+L Sbjct: 236 PHRLRHTSAVRWLKAGGSEAGLMAQAGWQSRRQIDRYIKSAAEEL 280 Score = 57.8 bits (138), Expect = 3e-07 Identities = 58/221 (26%), Positives = 88/221 (39%), Gaps = 1/221 (0%) Frame = -3 Query: 45297 RLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDAAAVGGSTDPV 45118 RL ++ +F R+ + V D V+ PK + L+ D + L A G + Sbjct: 72 RLTAVKQFMRWVADEEGVNVDGLLVVRPPKLDQKVVKHLS-DRAVQALVATCAGNTFRD- 129 Query: 45117 VLRDKALLEFMYATGCRVSEATGANLDDIDL-DEHIARLMGKGSKQRLVPLGSYACRAIT 44941 RDKAL+ TG R +E +++D+ L D + GKG+K R V I Sbjct: 130 -RRDKALIVLFTETGIRAAEMLALDVEDVSLVDCQLTVRRGKGAKGRRVKYSPMCAATID 188 Query: 44940 AYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTL 44761 YL A R A L++ G R+S + +K + AG+ HPH L Sbjct: 189 KYLRA-------RRRAGHGSEGPLWIGLGG-RLSYTGMKSSLKRRADDAGVPG-FHPHRL 239 Query: 44760 RHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETL 44638 RH+ A ++ G + G S Y + E L Sbjct: 240 RHTSAVRWLKAGGSEAGLMAQAGWQSRRQIDRYIKSAAEEL 280 >ref|NP_061531.1|integrase Length = 369 Score = 65.5 bits (158), Expect = 1e-09 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 3/162 (1%) Frame = -2 Query: 25510 LELLYATGIRVAELVSMDIADIDFSNRTIKVTG---KGNKQRVVPFGLPAQRALETWLEQ 25340 + L TG R E++ ++ +DF+NR I + K K+R +P A AL+ Sbjct: 188 IRLAVNTGCRREEMLGLEWRRVDFANRLIYLEASHTKAGKRRSIPINEGAMAALKR---- 243 Query: 25339 GRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSA 25160 R A + S +F A G R+ A +A + A + D + H LRH+ Sbjct: 244 ------RMAFRSETSPECPWVFARANGDRVISLSAG--FKQACQAAKIADFTIHDLRHTC 295 Query: 25159 ATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYG 25034 A ++ G L +V+++LGHS++ T+RY H++ ++++ G Sbjct: 296 AAWLVSAGVPLADVRDLLGHSTVAMTERYAHLAPARVRDAVG 337 Score = 52.4 bits (124), Expect = 1e-05 Identities = 70/247 (28%), Positives = 96/247 (38%), Gaps = 8/247 (3%) Frame = -3 Query: 45363 QDVEDYIAALDQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKG-----AS 45199 QD+ Y A AG S + R LA++ A H T A KG A Sbjct: 103 QDIRGYGAHRLDAGASPATINRELAALS-----AAINHCNTELEWALPNPVKGRKMREAE 157 Query: 45198 TLPDVLTVDEVTRLLDAAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDE 45019 LT EV L AA G +L D + TGCR E G +D Sbjct: 158 GRDRWLTRAEVEALCRAAR--GQKFGPMLED--FIRLAVNTGCRREEMLGLEWRRVDFAN 213 Query: 45018 HIARLMG---KGSKQRLVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGK 44848 + L K K+R +P+ A A+ + A R E PE +F G Sbjct: 214 RLIYLEASHTKAGKRRSIPINEGAMAALKRRM-AFRSETS-------PECPWVFARANGD 265 Query: 44847 RISRQSVWEIVKATGERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQ 44668 R+ S K + A I H LRH+ A L+ G + V++LLGH++V T+ Sbjct: 266 RVISLSAG--FKQACQAAKIAD-FTIHDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTE 322 Query: 44667 IYTHVSP 44647 Y H++P Sbjct: 323 RYAHLAP 329 >ref|NP_665963.1|putative site specific recombinase Int2 Length = 199 Score = 64.7 bits (156), Expect = 2e-09 Identities = 58/175 (33%), Positives = 78/175 (44%), Gaps = 21/175 (12%) Frame = -2 Query: 25528 QRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNK-------QRVVPFGLPA 25370 +R+ AIL LLY TG+R AEL +D A +D + +++ + K R F L Sbjct: 29 ERDNAILTLLYDTGLRRAELSGVDRAMLDVDDELLRIPSRIQKGYPNDRDPRPATFELDR 88 Query: 25369 QRALETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREA---- 25202 L T + R D ALF R+ + D+V RAAR A Sbjct: 89 GENLRTIATLNAYLEVRDDVD--------ALFPSQMSTRMSPKGVNDVVKRAARRADIRP 140 Query: 25201 -------GVPDISPHALRHSAATHML--DGGADLREVQEMLGHSSLKTTQR-YTH 25067 G D+S H LRHS A ML + G L +V+ L H SL+TT+R Y H Sbjct: 141 FTFEGRGGPDDVSAHTLRHSLAWRMLRVETGNILYDVRNRLRHRSLQTTERTYDH 195 Score = 47.4 bits (111), Expect = 4e-04 Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 20/196 (10%) Frame = -3 Query: 45183 LTVDEVTRLLDAAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARL 45004 L D+V + A G + RD A+L +Y TG R +E +G + +D+D+ + R+ Sbjct: 10 LKPDQVEAMRAAVLEGSHPE----RDNAILTLLYDTGLRRAELSGVDRAMLDVDDELLRI 65 Query: 45003 ---MGKGSKQRLVPLGSYACRAITAYLNAGRGELEQRSSAKIPERR----ALFLNKRGKR 44845 + KG P R T L+ G + E R ALF ++ R Sbjct: 66 PSRIQKGYPNDRDP------RPATFELDRGENLRTIATLNAYLEVRDDVDALFPSQMSTR 119 Query: 44844 ISRQSVWEIVKATGERAGI----------TKPLHPHTLRHSFATHL--IQGGADVRTVQE 44701 +S + V ++VK RA I + HTLRHS A + ++ G + V+ Sbjct: 120 MSPKGVNDVVKRAARRADIRPFTFEGRGGPDDVSAHTLRHSLAWRMLRVETGNILYDVRN 179 Query: 44700 LLGHASVTTTQ-IYTH 44656 L H S+ TT+ Y H Sbjct: 180 RLRHRSLQTTERTYDH 195 >ref|NP_862840.1|gp1 Length = 375 Score = 63.2 bits (152), Expect = 7e-09 Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 17/207 (8%) Frame = -3 Query: 45213 PKGASTLPDV-------LTVDEVTRLLDAAAVGGSTDPVVLRDKALLEFMYATGCRVSEA 45055 PK TL D+ LT+ E+ L+DA + P + ++ + TG R E Sbjct: 160 PKKPETLEDIEKKRNKFLTMQEIKALIDAL----NNKPYQQKYADMVTVLALTGMRYGEL 215 Query: 45054 TGANLDDIDLDEHIARLMGK-GSKQRLVPLGSYACRAITAYLNAGRGELEQRSSAKIPER 44878 T L +ID + + + G S ++ L A T ++ + QR ++ ER Sbjct: 216 TALQLKNIDFENNKIEITGNFDSINKIKTLPKTAKSIRTILVSDAVIKAIQRQVVRLTER 275 Query: 44877 RA--------LFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSFATHLIQGGA 44722 L I+ S +I+K G +AGI K L H RHS ++L + G Sbjct: 276 YQPLKDDDYIFCLEVWNSPITLPSFIQIIKKYGAKAGIEKNLSSHIFRHSHISYLAEAGL 335 Query: 44721 DVRTVQELLGHASV-TTTQIYTHVSPE 44644 ++++ + +GHA+ T +IY+H + + Sbjct: 336 PIKSIMDRVGHANAKMTLEIYSHTTQD 362 >ref|NP_076752.1|integrase Length = 394 Score = 62.8 bits (151), Expect = 9e-09 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 14/164 (8%) Frame = -2 Query: 25513 ILELLYATGIRVAELVSMDIADIDFSNRTIKV-----------TGKGNKQ-RVVPFGLPA 25370 + LL A+G+R+ E V++ +DIDF ++ V T K +K R+V A Sbjct: 219 LCRLLVASGLRIGEAVALSWSDIDFKTGSVSVSKTTLRAVIQSTPKTDKSNRIVLIDSKA 278 Query: 25369 QRALETW-LEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP 25193 L+ W L Q + ++ + +F GG +D + R + + R +P Sbjct: 279 VEVLKHWELFQAKYFMS------IGKGKQELVFPNRTGGVLDYQTMRPFLIKWLRACQLP 332 Query: 25192 DISPHALRHSAATHMLDGGADLREVQEMLGHSSLK-TTQRYTHV 25064 + H RHS A+ +L+ +E+QE LGH+S+K T Y+H+ Sbjct: 333 QVGFHGFRHSHASLLLNADVPYKEIQERLGHASIKMTMDTYSHL 376 >ref|NP_758949.1|ORF58 Length = 210 Score = 59.7 bits (143), Expect = 7e-08 Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 1/224 (0%) Frame = -1 Query: 41300 QQHGPARVIAMCNQKGGVGKTTSSINIAGALAQYGRRVLIVDFDPQGAATVGLGVNANTV 41121 +++ A++IA+ NQKGG GKTT S N+A L G +VL+VD DPQG+AT Sbjct: 15 EENEMAKLIAILNQKGGAGKTTISTNVASQLHADGHKVLLVDLDPQGSAT---------- 64 Query: 41120 ENTIYTALFDISVDPHDVVQHTAFENIDVIPANIDLSAAEVQLVTEVGREQILNSVLRKL 40941 D S A E + +P V +G+ + + K+ Sbjct: 65 ---------DWS--------EQAEEGSEAVP------------VIRMGKTCTCD--IHKV 93 Query: 40940 KSEYD-LIIVDCQPSLGLLTVNALAAADGVIIPVAAEFFALRGVALLMQSIEKVQSRINP 40764 S Y+ L+ VD P + L A+ AAD V+IP + A L++ I K + + Sbjct: 94 ASGYEYLVSVDGAPQVADLAATAVRAADMVLIPTQPSPYDCWSAAELVE-IVKARQEVTD 152 Query: 40763 ALEVDGVLITMYTKTLHCEEVCQRIYEAFSEKVFHTFISRSIKL 40632 + +I+ K E + + + + ++ ++L Sbjct: 153 GIPKAAFIISRAIKRTKLEAEIKEALDYYELPILKNGTTQRVRL 196 >ref|NP_076780.1|integrase Length = 399 Score = 58.9 bits (141), Expect = 1e-07 Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 14/180 (7%) Frame = -2 Query: 25516 AILELLYATGIRVAELVSMDIADIDFSNRTIKV------------TGKGNK-QRVVPFGL 25376 A+L LL A+G+R+ E +++ +DI+F N+T+ V T K NK R++ Sbjct: 222 ALLRLLVASGLRIGEAMALSWSDINFQNQTVSVSKTTVRRFQIQDTPKSNKSNRIISIDD 281 Query: 25375 PAQRALETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGV 25196 A L++W + + + N +F GG +D ++ + A + Sbjct: 282 KAIYVLKSWY-----FFQKKHFMKLGNPQQNLVFPKIEGGVMDYHNLIYKLNNIIKNAEL 336 Query: 25195 PDISPHALRHSAATHMLDGGADLREVQEMLGHSSLK-TTQRYTHVSIEQLKNRYGQAFPR 25019 P +S H R S A+ L+ + +QE LGHS L+ T Y+H+ E+ KN+ + F + Sbjct: 337 PLLSFHGFRRSHASLCLNAEMSYKVIQERLGHSKLQLTMDLYSHLEPEK-KNKELELFTK 395 >ref|NP_599058.1|integrase Length = 387 Score = 58.5 bits (140), Expect = 2e-07 Identities = 66/241 (27%), Positives = 100/241 (41%), Gaps = 4/241 (1%) Frame = -3 Query: 45318 SARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDAAAV 45139 S +KA L+ I R A + + D + +K P+ + L E RL+D Sbjct: 142 SVATKATHLSFIKALLRAAEREWKML-DKAPIIKVPQPKNKRIRWLEPHEAQRLIDECP- 199 Query: 45138 GGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRL---VPL 44968 +P+ K+++EF ATG R S ID+ +A + + SK V L Sbjct: 200 ----EPL----KSVVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVAL 251 Query: 44967 GSYACRAITAYL-NAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAG 44791 ACR + + N R + S P+ R R + W KA RAG Sbjct: 252 NDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKA-PTVREMRYDANTAW---KAALRRAG 307 Query: 44790 ITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHP 44611 I H LRH++A+ L Q G + +QE+ G S+ + Y H++P +LT H Sbjct: 308 IDD-FRFHDLRHTWASWLGQAGVPLSVLQEMGGWESIEMVRRYAHLAP-----NHLTEHA 361 Query: 44610 R 44608 R Sbjct: 362 R 362 Score = 46.2 bits (108), Expect = 8e-04 Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 3/159 (1%) Frame = -2 Query: 25516 AILELLYATGIRVAELVSMDIADIDFSNRTIKVT---GKGNKQRVVPFGLPAQRALETWL 25346 +++E ATG+R + +++++ ID R + K N+ V A R L+ + Sbjct: 204 SVVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTACRVLKKQI 263 Query: 25345 EQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRH 25166 + K A + R R D A A R AG+ D H LRH Sbjct: 264 GNHHRWVFVYKESCTKPDGTKAPTV--REMRYDANTAWKA---ALRRAGIDDFRFHDLRH 318 Query: 25165 SAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQL 25049 + A+ + G L +QEM G S++ +RY H++ L Sbjct: 319 TWASWLGQAGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 >ref|NP_046572.1|ABC transporter Length = 705 Score = 58.2 bits (139), Expect = 2e-07 Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 10/195 (5%) Frame = -3 Query: 68349 VDGANFTIHRSEVLGLVGESGSGKSTTGRAIAGLQKVSGGSLNVLGIEMNGVKERDFKPK 68170 V+ N + R + + ++GESG+GKST ++++ L KV S+ + G+++N D Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDIN---RYDHLSI 555 Query: 68169 RADIGFVFQDPGSSFNPLMTIAENVAEPLLVHHKYGSVADAKNYVGDLLEMVQ------- 68011 R I ++ ++P F TI EN+ G + D +N + + M Q Sbjct: 556 RKRIVYIDENP---FLFKGTIKENLC--------MGEIFD-QNEIENACIMSQCHEFICN 603 Query: 68010 LPRAYMNRFPH---ELSGGQRQRASLARGLALKPSLLIADEPTSALDVSVQAKVLELFKR 67840 L + Y + LS GQ+QR +LAR + +P +LI DE S +D + E R Sbjct: 604 LDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHR 663 Query: 67839 LQAEIGFACLFITHD 67795 + I + ITH+ Sbjct: 664 MDCLI----ILITHN 674 Score = 43.1 bits (100), Expect = 0.007 Identities = 22/72 (30%), Positives = 39/72 (54%) Frame = -3 Query: 18903 VDDVSFSVKRGTTLAIVGESGSGKSTVANMVLHLLKPTSGKVFYEGRDTSTFKAKDLLGF 18724 V+D++ + R + I+GESG+GKST A + L K ++ G D + + D L Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRY---DHLSI 555 Query: 18723 RRHVQPVFQNPY 18688 R+ + + +NP+ Sbjct: 556 RKRIVYIDENPF 567 >ref|NP_059584.1|Int Length = 387 Score = 57.8 bits (138), Expect = 3e-07 Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 4/214 (1%) Frame = -3 Query: 45237 DVSAAVKAPKGASTLPDVLTVDEVTRLLDAAAVGGSTDPVVLRDKALLEFMYATGCRVSE 45058 D + +K P+ + L E RL+D +P+ K+++EF +TG R S Sbjct: 168 DKAPIIKVPQPKNKRIRWLEPHEAKRLIDECQ-----EPL----KSVVEFALSTGLRRSN 218 Query: 45057 ATGANLDDIDLDEHIARLMGKGSKQRL---VPLGSYACRAITAYL-NAGRGELEQRSSAK 44890 ID+ +A + + SK V L ACR + + N + + S+ Sbjct: 219 IINLEWQQIDMQRKVAWIHPEQSKSNHAIGVALNDTACRVLKKQIGNHHKWVFVYKESST 278 Query: 44889 IPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSFATHLIQGGADVRT 44710 P+ + ++ R + W +A +RAGI + H LRH++A+ L+Q G + Sbjct: 279 KPDGTKSPVVRK-MRYDANTAW---RAALKRAGI-EDFRFHDLRHTWASWLVQAGVPISV 333 Query: 44709 VQELLGHASVTTTQIYTHVSPETLIETYLTSHPR 44608 +QE+ G S+ + Y H++P +LT H R Sbjct: 334 LQEMGGWESIEMVRRYAHLAP-----NHLTEHAR 362 Score = 44.3 bits (103), Expect = 0.003 Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 8/164 (4%) Frame = -2 Query: 25516 AILELLYATGIRVAELVSMDIADIDFSNRTIKV---TGKGNKQRVVPFGLPAQRALETWL 25346 +++E +TG+R + +++++ ID + + K N V A R L+ + Sbjct: 204 SVVEFALSTGLRRSNIINLEWQQIDMQRKVAWIHPEQSKSNHAIGVALNDTACRVLKKQI 263 Query: 25345 EQGRPVL-----ARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISP 25181 + + T D KS + R D A A + AG+ D Sbjct: 264 GNHHKWVFVYKESSTKPDGTKSPVVRKM-------RYDANTAW---RAALKRAGIEDFRF 313 Query: 25180 HALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQL 25049 H LRH+ A+ ++ G + +QEM G S++ +RY H++ L Sbjct: 314 HDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHL 357 >ref|YP_006360.1|Int Length = 387 Score = 57.4 bits (137), Expect = 4e-07 Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 4/214 (1%) Frame = -3 Query: 45237 DVSAAVKAPKGASTLPDVLTVDEVTRLLDAAAVGGSTDPVVLRDKALLEFMYATGCRVSE 45058 D + +K P+ + L E RL+D +P+ K+++EF +TG R S Sbjct: 168 DKAPIIKVPQPKNKRIRWLEPHEAKRLIDECP-----EPL----KSVVEFALSTGLRRSN 218 Query: 45057 ATGANLDDIDLDEHIARLMGKGSKQRL---VPLGSYACRAITAYL-NAGRGELEQRSSAK 44890 + ID+ +A + + SK V L ACR + + N + + S+ Sbjct: 219 IINMDWQQIDMQRKVAWIHPEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESST 278 Query: 44889 IPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSFATHLIQGGADVRT 44710 P+ + ++ R + W ++ +RAGI + H LRH++A+ L+Q G + Sbjct: 279 KPDGTKSPVVRK-MRYDANTAW---RSALKRAGI-EDFRFHDLRHTWASWLVQAGVPISV 333 Query: 44709 VQELLGHASVTTTQIYTHVSPETLIETYLTSHPR 44608 +QE+ G S+ + Y H++P +LT H R Sbjct: 334 LQEMGGWESIEMVRRYAHLAP-----NHLTEHAR 362 Score = 47.8 bits (112), Expect = 3e-04 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 8/164 (4%) Frame = -2 Query: 25516 AILELLYATGIRVAELVSMDIADIDFSNRTIKV---TGKGNKQRVVPFGLPAQRALETWL 25346 +++E +TG+R + +++MD ID + + K N+ V A R L+ + Sbjct: 204 SVVEFALSTGLRRSNIINMDWQQIDMQRKVAWIHPEQSKSNQAIGVALNDTACRVLKKQI 263 Query: 25345 EQGRPVL-----ARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISP 25181 + + T D KS + R D A A + AG+ D Sbjct: 264 GNHHKWVFVYKESSTKPDGTKSPVVRKM-------RYDANTAW---RSALKRAGIEDFRF 313 Query: 25180 HALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQL 25049 H LRH+ A+ ++ G + +QEM G S++ +RY H++ L Sbjct: 314 HDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHL 357 >ref|NP_040813.1|integrase Length = 289 Score = 57.4 bits (137), Expect = 4e-07 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 2/162 (1%) Frame = -3 Query: 45105 KALLEFMYATGCRVSEATGANLDDIDLDEHIAR-LMGKGSKQRLVPLGSYACRAITAYLN 44929 K+ + + +G RVSEA + D+D + R L K KQR P S++ + I + Sbjct: 132 KSFIRLLLDSGLRVSEALNIKISDMDFKNKVIRVLSSKTRKQRYAPFSSFSLKYIKELIE 191 Query: 44928 AGRGELEQRSSAKIPERRALFLN-KRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHS 44752 P+R LF N + ++ ++ + K + + + +H H R + Sbjct: 192 VN------------PKRDYLFYNFIKDRQTNKNDIKLFYKRLKKHLNLER-IHTHRFRKT 238 Query: 44751 FATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETY 44626 FA+ LI+ G ++ +Q++ H+ + TT Y + + ++ Y Sbjct: 239 FASILIENGLNIDDLQKIFDHSRIETTIKYVQHNEKRALQEY 280 Score = 54.7 bits (130), Expect = 2e-06 Identities = 37/161 (22%), Positives = 80/161 (49%), Gaps = 1/161 (0%) Frame = -2 Query: 25516 AILELLYATGIRVAELVSMDIADIDFSNRTIKV-TGKGNKQRVVPFGLPAQRALETWLEQ 25340 + + LL +G+RV+E +++ I+D+DF N+ I+V + K KQR PF + + ++ +E Sbjct: 133 SFIRLLLDSGLRVSEALNIKISDMDFKNKVIRVLSSKTRKQRYAPFSSFSLKYIKELIEV 192 Query: 25339 GRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSA 25160 P + +K R N + R+ + + + +H H R + Sbjct: 193 -NPKRDYLFYNFIKDRQTNKNDIKLFYKRLKKHLNLERIH------------THRFRKTF 239 Query: 25159 ATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRY 25037 A+ +++ G ++ ++Q++ HS ++TT +Y + ++ Y Sbjct: 240 ASILIENGLNIDDLQKIFDHSRIETTIKYVQHNEKRALQEY 280 >ref|NP_720278.1|Int Length = 387 Score = 57.0 bits (136), Expect = 5e-07 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 4/214 (1%) Frame = -3 Query: 45237 DVSAAVKAPKGASTLPDVLTVDEVTRLLDAAAVGGSTDPVVLRDKALLEFMYATGCRVSE 45058 D + +K P+ + L E RL+D +P+ K+++EF +TG R S Sbjct: 168 DKAPIIKVPQPKNKRIRWLEPHEAKRLIDECP-----EPL----KSVVEFALSTGLRRSN 218 Query: 45057 ATGANLDDIDLDEHIARLMGKGSKQRL---VPLGSYACRAITAYL-NAGRGELEQRSSAK 44890 ID+ +A + + SK V L ACR + + N + + S+ Sbjct: 219 IINLEWQQIDMQRKVAWIHPEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESST 278 Query: 44889 IPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSFATHLIQGGADVRT 44710 P+ + ++ R + W ++ +RAGI + H LRH++A+ L+Q G + Sbjct: 279 KPDGTKSPVVRK-MRYDANTAW---RSALKRAGI-EDFRFHDLRHTWASWLVQAGVPISV 333 Query: 44709 VQELLGHASVTTTQIYTHVSPETLIETYLTSHPR 44608 +QE+ G S+ + Y H++P +LT H R Sbjct: 334 LQEMGGWESIEMVRRYAHLAP-----NHLTEHAR 362 Score = 45.1 bits (105), Expect = 0.002 Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 8/164 (4%) Frame = -2 Query: 25516 AILELLYATGIRVAELVSMDIADIDFSNRTIKV---TGKGNKQRVVPFGLPAQRALETWL 25346 +++E +TG+R + +++++ ID + + K N+ V A R L+ + Sbjct: 204 SVVEFALSTGLRRSNIINLEWQQIDMQRKVAWIHPEQSKSNQAIGVALNDTACRVLKKQI 263 Query: 25345 EQGRPVL-----ARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISP 25181 + + T D KS + R D A A + AG+ D Sbjct: 264 GNHHKWVFVYKESSTKPDGTKSPVVRKM-------RYDANTAW---RSALKRAGIEDFRF 313 Query: 25180 HALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQL 25049 H LRH+ A+ ++ G + +QEM G S++ +RY H++ L Sbjct: 314 HDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHL 357 >ref|NP_536628.1|Int Length = 345 Score = 56.6 bits (135), Expect = 6e-07 Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 26/172 (15%) Frame = -3 Query: 45069 RVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLNAGR-GELEQRSSA 44893 +V++ A LD D+ + RL G S R V + A R E + Sbjct: 165 KVNQRALAYLDKADIQPFLQRLGGFESDGRSVSIPEIVLIAKICLATGARISEALSLERS 224 Query: 44892 KIPERRALFLNKRGKRI-----SRQSVWEIVKATGERAGITKPLH--------------- 44773 +I E + F+ +GKRI S EI+ A+ I + Sbjct: 225 QISEFKLTFVETKGKRIRSVPISENLYKEIMLASSSSTKIFSTTYGSAHRYIKKALPDYV 284 Query: 44772 -----PHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIE 44632 H LRH+FATH + D+ +Q +LGH + T Y H SP+ LI+ Sbjct: 285 PEGQATHVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQ 336 Score = 47.4 bits (111), Expect = 4e-04 Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 5/160 (3%) Frame = -2 Query: 25513 ILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGR 25334 I ++ ATG R++E +S++ + I T T KG + R VP + + Sbjct: 204 IAKICLATGARISEALSLERSQISEFKLTFVET-KGKRIRSVPISENLYKEI-------- 254 Query: 25333 PVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISP-----HALR 25169 + S ++ +F G HR ++A +PD P H LR Sbjct: 255 ---------MLASSSSTKIFSTTYGS----------AHRYIKKA-LPDYVPEGQATHVLR 294 Query: 25168 HSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQL 25049 H+ ATH + D+ +Q +LGH ++ T Y H S + L Sbjct: 295 HTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHL 334 >ref|NP_663635.1|putative integrase Length = 359 Score = 55.1 bits (131), Expect = 2e-06 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 13/180 (7%) Frame = -2 Query: 25525 RNAAILELLYATGIRVAELVSMDIADIDFSNRTIK------------VTGKGNKQRVVPF 25382 + A+ +L TGIR EL++++ D S I + K N R++ Sbjct: 189 KKIALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANSNRLLSL 248 Query: 25381 GLPAQRALETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREA 25202 + L+ L Q P R +F GG + R + +E Sbjct: 249 DEKTCKILDE-LHQTYPESTR-------------IFESENGGMLSPSKPRKWLLEITKEK 294 Query: 25201 GVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR-YTHVSIEQLKNRYGQAF 25025 + I HA RH+ A+ + + G L++VQ LGH+ LKTT YTH++ + K++ GQ F Sbjct: 295 EIEPIRIHAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHIT-KFAKDKIGQQF 353 Score = 48.1 bits (113), Expect = 2e-04 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 15/166 (9%) Frame = -3 Query: 45102 ALLEFMYATGCRVSEATGANLDD-----IDLDEHIAR-------LMGKGSKQRLVPLGSY 44959 AL + TG R E D +D+++ I+ L K + RL+ L Sbjct: 192 ALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANSNRLLSLDEK 251 Query: 44958 ACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRIS--RQSVWEIVKATGERAGIT 44785 C+ + EL Q PE +F ++ G +S + W +++ T E+ Sbjct: 252 TCKILD--------ELHQT----YPESTRIFESENGGMLSPSKPRKW-LLEITKEKE--I 296 Query: 44784 KPLHPHTLRHSFATHLIQGGADVRTVQELLGHASV-TTTQIYTHVS 44650 +P+ H RH+ A+ L + G ++ VQ LGHA + TT IYTH++ Sbjct: 297 EPIRIHAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHIT 342 >ref|NP_076635.1|integrase Length = 359 Score = 55.1 bits (131), Expect = 2e-06 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 13/180 (7%) Frame = -2 Query: 25525 RNAAILELLYATGIRVAELVSMDIADIDFSNRTIK------------VTGKGNKQRVVPF 25382 + A+ +L TGIR EL++++ D S I + K N R++ Sbjct: 189 KKIALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANSNRLLSL 248 Query: 25381 GLPAQRALETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREA 25202 + L+ L Q P R +F GG + R + +E Sbjct: 249 DEKTCKILDE-LHQTYPESTR-------------IFESENGGMLSPSKPRKWLLEITKEK 294 Query: 25201 GVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR-YTHVSIEQLKNRYGQAF 25025 + I HA RH+ A+ + + G L++VQ LGH+ LKTT YTH++ + K++ GQ F Sbjct: 295 EIEPIRIHAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHIT-KFAKDKIGQQF 353 Score = 48.1 bits (113), Expect = 2e-04 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 15/166 (9%) Frame = -3 Query: 45102 ALLEFMYATGCRVSEATGANLDD-----IDLDEHIAR-------LMGKGSKQRLVPLGSY 44959 AL + TG R E D +D+++ I+ L K + RL+ L Sbjct: 192 ALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANSNRLLSLDEK 251 Query: 44958 ACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRIS--RQSVWEIVKATGERAGIT 44785 C+ + EL Q PE +F ++ G +S + W +++ T E+ Sbjct: 252 TCKILD--------ELHQT----YPESTRIFESENGGMLSPSKPRKW-LLEITKEKE--I 296 Query: 44784 KPLHPHTLRHSFATHLIQGGADVRTVQELLGHASV-TTTQIYTHVS 44650 +P+ H RH+ A+ L + G ++ VQ LGHA + TT IYTH++ Sbjct: 297 EPIRIHAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHIT 342 >ref|NP_050999.1|P38 Length = 390 Score = 55.1 bits (131), Expect = 2e-06 Identities = 65/233 (27%), Positives = 97/233 (41%), Gaps = 4/233 (1%) Frame = -3 Query: 45318 SARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDAAAV 45139 S +KA+ LA + + A + + S +K P L DE RL++ Sbjct: 142 SIATKAKHLALLKSMMKSA-ERDWKWIEKSPVIKVPSAREKRIRWLEPDEAERLINEC-- 198 Query: 45138 GGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRL---VPL 44968 P LR + +EF ATG R S ID+ +A + + SK V L Sbjct: 199 -----PEPLR--STVEFALATGLRRSNIINLAWSQIDMQRKVAWIEPENSKSGKAIGVAL 251 Query: 44967 GSYACRAITAYL-NAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAG 44791 AC +T L N + SAK + + R R+ + W +A +RAG Sbjct: 252 NDTACCILTRQLGNHQKWVFVHTMSAKRSDGSQTN-SIRKMRVDSNTAW---RAALKRAG 307 Query: 44790 ITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIE 44632 I H LRH++A+ LIQ G + +QE+ G SV + Y H++ L E Sbjct: 308 IEN-FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESVEMVRRYAHLASNHLTE 359 Score = 41.6 bits (96), Expect = 0.021 Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 1/155 (0%) Frame = -2 Query: 25510 LELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQ-RVVPFGLPAQRALETWLEQGR 25334 +E ATG+R + ++++ + ID + + + +K + + L + G Sbjct: 206 VEFALATGLRRSNIINLAWSQIDMQRKVAWIEPENSKSGKAIGVALNDTACCILTRQLGN 265 Query: 25333 PVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAAT 25154 R+ + R R+D A A + AG+ + H LRH+ A+ Sbjct: 266 HQKWVFVHTMSAKRSDGSQTNSIRKMRVDSNTAW---RAALKRAGIENFRFHDLRHTWAS 322 Query: 25153 HMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQL 25049 ++ G L +QEM G S++ +RY H++ L Sbjct: 323 WLIQSGVPLSVLQEMGGWESVEMVRRYAHLASNHL 357 >ref|NP_795396.1|site-specific recombinase Length = 191 Score = 54.3 bits (129), Expect = 3e-06 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 2/161 (1%) Frame = -2 Query: 25525 RNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWL 25346 RN +L TG+R+ +++ + + D+ N + K KQ+ P +R ++ ++ Sbjct: 26 RNFLLLLFGLNTGLRIGDILPLKVKDVTAGNYIDIIEQKTGKQKRFPINKTLRREIDKYI 85 Query: 25345 EQGRPVLARTATDAVKSRAANALFLGARGGR--IDQRIARDIVHRAAREAGVPDISPHAL 25172 + + D + G G + I + A I+++AA++ G+ I H++ Sbjct: 86 KDKQ----LKPWDYLFESQKKCTEPGKEGQKKPISREQAWKILNKAAKQFGIHHIGTHSM 141 Query: 25171 RHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQL 25049 R S HM D+ + EM HSS T RY ++ E++ Sbjct: 142 RKSFGYHMYQKTQDIAMLMEMFNHSSPDITLRYIGINQERI 182 Score = 53.5 bits (127), Expect = 5e-06 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 2/160 (1%) Frame = -3 Query: 45111 RDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYL 44932 R+ LL F TG R+ + + D+ +I + K KQ+ P+ R I Y+ Sbjct: 26 RNFLLLLFGLNTGLRIGDILPLKVKDVTAGNYIDIIEQKTGKQKRFPINKTLRREIDKYI 85 Query: 44931 NAGRGELEQRSSAKIPERRALFLNKRGKR--ISRQSVWEIVKATGERAGITKPLHPHTLR 44758 +L+ +++ K G++ ISR+ W+I+ ++ GI + H++R Sbjct: 86 KDK--QLKPWDYLFESQKKCTEPGKEGQKKPISREQAWKILNKAAKQFGI-HHIGTHSMR 142 Query: 44757 HSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETL 44638 SF H+ Q D+ + E+ H+S T Y ++ E + Sbjct: 143 KSFGYHMYQKTQDIAMLMEMFNHSSPDITLRYIGINQERI 182 >ref|NP_076801.1|integrase Length = 382 Score = 53.9 bits (128), Expect = 4e-06 Identities = 66/301 (21%), Positives = 126/301 (41%), Gaps = 27/301 (8%) Frame = -3 Query: 45471 ERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAGESARSKARRL 45292 ++ + ++++A +S ID+ + + +T + ++ +I D RSK R Sbjct: 77 KKSIKQSSISALQSSFNFIIDYFDKE--IKISNVTSKVIQKFINDAD----CPRSKLERS 130 Query: 45291 AS-IHEFHRFALGQHAVTADVSAAVKAPKGASTLPDV-------LTVDEVTRLLDAAAVG 45136 S ++ +A+ + + + K PK T+ D+ L +E+ LL Sbjct: 131 KSTLNLIFDYAVDLEYIEYNPARKAKLPKKIQTVKDLEKIQNKYLEQNELKALLSELYSR 190 Query: 45135 GSTDPVVLRDKALLEFMYATGCRVSEATGANLDD-------IDLDEHIARLMGKGSKQRL 44977 +T + L L EFM GCR+ EA ++ ID+ + + +G + Sbjct: 191 PNTRRLAL----LAEFMSLNGCRMGEAIALKKENYKRSERKIDIHGTLDKTVGYSKGVKT 246 Query: 44976 VPLGSYACRAITAY---LNAGRGELEQRSSAK-----IPERRALFLNKRGKRISRQSVWE 44821 P + + R + + +EQ + +K E +F++KRG + S Sbjct: 247 TPKTASSFRTVDLSDREIEILDEIIEQNNLSKSVINDYNEMGYIFVSKRGIPLQTNSFNL 306 Query: 44820 IVKATGER--AGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGH--ASVTTTQIYTHV 44653 +K R + I K L H RH+ ++L + ++ + + +GH TTT IYTHV Sbjct: 307 AIKRANSRLKSPINKNLSSHIFRHTLISYLAENNVPLKAIVDRVGHKDGGKTTTAIYTHV 366 Query: 44652 S 44650 + Sbjct: 367 T 367 >ref|NP_046786.1|Int Length = 337 Score = 53.5 bits (127), Expect = 5e-06 Identities = 61/251 (24%), Positives = 93/251 (37%), Gaps = 6/251 (2%) Frame = -3 Query: 45372 ITKQDVEDYIAALDQAGESARSKARRLASIHEFHRFAL------GQHAVTADVSAAVKAP 45211 ITK + Y A G S R L I + G+H + + P Sbjct: 101 ITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEKP 160 Query: 45210 KGASTLPDVLTVDEVTRLLDAAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDI 45031 + LT +E+ LL AA+ G + + +TG R EA ++I Sbjct: 161 ETG-----YLTQEEIALLL--AALDGDNKKIAI-------LCLSTGARWGEAARLKAENI 206 Query: 45030 DLDEHIARLMGKGSKQRLVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRG 44851 + + + K +K R VP+ + I +R LF + Sbjct: 207 -IHNRVTFVKTKTNKPRTVPISEAVAKMIADN-----------------KRGFLFPDADY 248 Query: 44850 KRISRQSVWEIVKATGERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTT 44671 R R +KA + + H LRHSFATH + G + T+Q +LGH + T Sbjct: 249 PRFRRT-----MKAI--KPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQT 301 Query: 44670 QIYTHVSPETL 44638 +Y H +PE L Sbjct: 302 MVYAHFAPEYL 312 Score = 47.0 bits (110), Expect = 5e-04 Identities = 44/164 (26%), Positives = 63/164 (38%), Gaps = 4/164 (2%) Frame = -2 Query: 25522 NAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLE 25343 N I L +TG R E + +I NR V K NK R VP Sbjct: 181 NKKIAILCLSTGARWGEAARLKAENI-IHNRVTFVKTKTNKPRTVP-------------- 225 Query: 25342 QGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDI----SPHA 25175 ++ + LF A R R +A PD+ + HA Sbjct: 226 -----ISEAVAKMIADNKRGFLFPDADYPRF----------RRTMKAIKPDLPMGQATHA 270 Query: 25174 LRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKN 25043 LRHS ATH + G + +Q +LGH+ ++ T Y H + E L++ Sbjct: 271 LRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQD 314 >ref|NP_852580.1|DNA integration Length = 180 Score = 52.8 bits (125), Expect = 9e-06 Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 3/161 (1%) Frame = -2 Query: 25534 ESQRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALE 25355 +S RN + + TG+R+++++ + + D+ S+ +++ G KQ+ + +R L+ Sbjct: 23 KSLRNYILFIMGINTGLRISDILKLKVGDVKGSHISMREEKTG-KQKRIQITAALKRELK 81 Query: 25354 TWLEQGRPVLARTATDAVKSRAANALFLGARGGR---IDQRIARDIVHRAAREAGVPDIS 25184 ++E+ R N L +R GR I + +A I+ AA + G+ +I Sbjct: 82 WFIEE---------------REDNEYLLQSRQGRNRPIGRSMAYKILSGAAADFGLDEIG 126 Query: 25183 PHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 25061 H LR + HM ++ + E+ HSS K T RY V+ Sbjct: 127 THTLRKTYGYHMYMQTKNIALLMEIFNHSSEKVTLRYIGVN 167 >ref|NP_795660.1|putative integrase Length = 362 Score = 52.4 bits (124), Expect = 1e-05 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 7/171 (4%) Frame = -2 Query: 25534 ESQRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTG-----KGNKQRVVPFGLPA 25370 ES I LL G+R+ E V++ D DF+N TI +T K K P + Sbjct: 188 ESLEMLLIYRLLAYGGLRIGEAVALYDTDFDFTNNTISITKTLAQTKAGKVIQNPKTKKS 247 Query: 25369 QRALETWLEQGRPVLART-ATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP 25193 R + ++Q LA+ +V+ + + +R+ R + ++ Sbjct: 248 SRTIS--MDQETMRLAKEYMRQSVRPLHGSFRVFNLLTSTVRRRLKRTVERHHLKK---- 301 Query: 25192 DISPHALRHSAATHMLDGGADLREVQEMLGHSSLK-TTQRYTHVSIEQLKN 25043 I+PH RH+ A+ + + G + QE LGH+ + T YTH+S Q N Sbjct: 302 -INPHGFRHTHASLLFEAGVPAKLAQERLGHAKISITMDLYTHLSKNQTDN 351 Score = 44.3 bits (103), Expect = 0.003 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Frame = -3 Query: 44817 VKATGERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVT-TTQIYTHVS 44650 +K T ER + K ++PH RH+ A+ L + G + QE LGHA ++ T +YTH+S Sbjct: 290 LKRTVERHHLKK-INPHGFRHTHASLLFEAGVPAKLAQERLGHAKISITMDLYTHLS 345 >ref|NP_817384.1|gp46 Length = 436 Score = 52.4 bits (124), Expect = 1e-05 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Frame = -3 Query: 44871 LFLNKRGKRISRQSVWEIVKATGERAGI---TKPLHPHTLRHSFATHLIQGGADVRTVQE 44701 L +K GK I +S +++ + AG+ T+ L PH RH+ +T L G D +T E Sbjct: 333 LVWHKEGKPIDPRSDYDVWRGVFRAAGVIGPTESLPPHNSRHTTSTLLRAAGVDEQTRME 392 Query: 44700 LLGHASVTTTQIYTH 44656 +LGHASV +IY H Sbjct: 393 ILGHASVDAQRIYAH 407 Score = 38.5 bits (88), Expect = 0.18 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Frame = -2 Query: 25261 GGRIDQRIARDIVHRAAREAGV----PDISPHALRHSAATHMLDGGADLREVQEMLGHSS 25094 G ID R D+ R AGV + PH RH+ +T + G D + E+LGH+S Sbjct: 339 GKPIDPRSDYDVWRGVFRAAGVIGPTESLPPHNSRHTTSTLLRAAGVDEQTRMEILGHAS 398 Query: 25093 LKTTQRYTH 25067 + + Y H Sbjct: 399 VDAQRIYAH 407 >ref|NP_878228.1|Int Length = 326 Score = 52.4 bits (124), Expect = 1e-05 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 9/80 (11%) Frame = -3 Query: 44850 KRISRQSVWEIVKATGER-AGITKPLHP--------HTLRHSFATHLIQGGADVRTVQEL 44698 K++ ++ ++ K E+ GI + + P H LRH+FA+H + G ++ +Q++ Sbjct: 232 KKVKEEASAKLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQI 291 Query: 44697 LGHASVTTTQIYTHVSPETL 44638 LGHAS+ T Y H++P+ L Sbjct: 292 LGHASIQQTMAYAHLAPDYL 311 Score = 49.3 bits (116), Expect = 1e-04 Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 4/158 (2%) Frame = -2 Query: 25504 LLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGRPVL 25325 L +TG R E+ ++ A I T T G K+ V P LE Sbjct: 187 LCLSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTV-----PISEELEK--------- 232 Query: 25324 ARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISP----HALRHSAA 25157 VK A+ LF ++D I+ R PDI P H LRH+ A Sbjct: 233 ------KVKEEASAKLF------KVDYEKFCGILRRVK-----PDIPPNQATHILRHTFA 275 Query: 25156 THMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKN 25043 +H + G ++ +Q++LGH+S++ T Y H++ + L+N Sbjct: 276 SHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQN 313 >ref|NP_839878.1|Int Length = 326 Score = 52.4 bits (124), Expect = 1e-05 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 9/80 (11%) Frame = -3 Query: 44850 KRISRQSVWEIVKATGER-AGITKPLHP--------HTLRHSFATHLIQGGADVRTVQEL 44698 K++ ++ ++ K E+ GI + + P H LRH+FA+H + G ++ +Q++ Sbjct: 232 KKVKEEASAKLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQI 291 Query: 44697 LGHASVTTTQIYTHVSPETL 44638 LGHAS+ T Y H++P+ L Sbjct: 292 LGHASIQQTMAYAHLAPDYL 311 Score = 49.3 bits (116), Expect = 1e-04 Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 4/158 (2%) Frame = -2 Query: 25504 LLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGRPVL 25325 L +TG R E+ ++ A I T T G K+ V P LE Sbjct: 187 LCLSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTV-----PISEELEK--------- 232 Query: 25324 ARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISP----HALRHSAA 25157 VK A+ LF ++D I+ R PDI P H LRH+ A Sbjct: 233 ------KVKEEASAKLF------KVDYEKFCGILRRVK-----PDIPPNQATHILRHTFA 275 Query: 25156 THMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKN 25043 +H + G ++ +Q++LGH+S++ T Y H++ + L+N Sbjct: 276 SHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQN 313 >ref|NP_803307.1|integrase Length = 401 Score = 52.0 bits (123), Expect = 2e-05 Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 19/170 (11%) Frame = -3 Query: 45102 ALLEFMYATGCRVSEATGANLDDIDLDEHIARLMG--------KG----------SKQRL 44977 ++LE TG R+ E DIDL + G KG S +R Sbjct: 218 SILEVQALTGMRIGELQALQEKDIDLLNKTINITGTIHRIKYEKGFGYKDTTKTISSKRS 277 Query: 44976 VPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGER 44797 + + S + + + +R ++ +R +F K+G + + ++K T + Sbjct: 278 ISINSRTVEIFKKIILENK--MLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKA 335 Query: 44796 AGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHA-SVTTTQIYTHVS 44650 + K + HT RH+ T L++ ++ + + +GH TT +IYTHV+ Sbjct: 336 LNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVT 385 Score = 45.4 bits (106), Expect = 0.001 Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 24/177 (13%) Frame = -2 Query: 25519 AAILELLYATGIRVAELVSMDIADIDFSNRTIKVTG--------KGNKQRVVPFGLPAQR 25364 A+ILE+ TG+R+ EL ++ DID N+TI +TG KG + + ++R Sbjct: 217 ASILEVQALTGMRIGELQALQEKDIDLLNKTINITGTIHRIKYEKGFGYKDTTKTISSKR 276 Query: 25363 ALETWLEQGRPVLARTATDAVKSRAANA--------------LFLGARGGRIDQRIARDI 25226 ++ + +RT K N +F +G + + Sbjct: 277 SIS--------INSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGV 328 Query: 25225 VHRAAREAGV-PDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR-YTHVS 25061 + + + + ++ H RH+ T +++ L+ + + +GH KTT R YTHV+ Sbjct: 329 LKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVT 385 >ref|NP_052278.1|Int Length = 336 Score = 51.2 bits (121), Expect = 3e-05 Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 2/184 (1%) Frame = -3 Query: 45183 LTVDEVTRLLDAAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARL 45004 LT D++++LL D + ++ ATG R SEA + I Sbjct: 170 LTHDQISQLLGECNRHDHPDL-----ETVVRICLATGARWSEAESLRKSQL-AKYKITYT 223 Query: 45003 MGKGSKQRLVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVW 44824 KG K R VP+ EL + +P+ +K+G+ S + Sbjct: 224 NTKGRKNRTVPISK---------------ELYE----SLPD------DKKGRLFS--DCY 256 Query: 44823 EIVKATGERAGITKPLHP--HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 44650 ++ ER GI P H LRH+FA+H + G ++ +Q +LGH + T Y H + Sbjct: 257 GAFRSALERTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFA 316 Query: 44649 PETL 44638 P+ L Sbjct: 317 PDHL 320 Score = 45.1 bits (105), Expect = 0.002 Identities = 41/157 (26%), Positives = 65/157 (41%) Frame = -2 Query: 25513 ILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGR 25334 ++ + ATG R +E S+ + + T T KG K R VP +L Sbjct: 193 VVRICLATGARWSEAESLRKSQLAKYKITYTNT-KGRKNRTVPISKELYESLP------- 244 Query: 25333 PVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAAT 25154 D K R LF G R + R E ++ H LRH+ A+ Sbjct: 245 --------DDKKGR----LFSDCYGA------FRSALERTGIELPAGQLT-HVLRHTFAS 285 Query: 25153 HMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKN 25043 H + G ++ +Q +LGH+ +K T RY H + + L++ Sbjct: 286 HFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLED 322 >ref|NP_852561.1|DNA integration Length = 369 Score = 50.8 bits (120), Expect = 3e-05 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 14/158 (8%) Frame = -3 Query: 45078 TGCRVSEATGANLDDIDLDEH-------------IARLMGKGSKQRLVPLGSYACRAITA 44938 TG R+ E G DID ++H I + S +R +P+ + A+ Sbjct: 198 TGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPNETIAALKK 257 Query: 44937 YLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLR 44758 + E + SA + ++ + N+ G+ I R + + GI K + H LR Sbjct: 258 HKILINKEKLRFGSAYL-DQDLINCNEFGRIIKRAHFRKSFIRMTHKVGI-KEIKFHDLR 315 Query: 44757 HSFATHLIQGGADVRTVQELLGHASVT-TTQIYTHVSP 44647 H+ AT L++ G + + + E LGH ++ T +Y+HV P Sbjct: 316 HTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLP 353 Score = 44.3 bits (103), Expect = 0.003 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 14/161 (8%) Frame = -2 Query: 25504 LLYATGIRVAELVSMDIADIDFSNRT------------IKVTGKGNKQRVVPFGLPAQRA 25361 L TG+R+ E++ + DIDF T IK T K N + +P Sbjct: 194 LAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKRT---IPVPNE 250 Query: 25360 LETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIA-RDIVHRAAREAGVPDIS 25184 L++ + ++ + + L GRI +R R R + G+ +I Sbjct: 251 TIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHKVGIKEIK 310 Query: 25183 PHALRHSAATHMLDGGADLREVQEMLGHSSLK-TTQRYTHV 25064 H LRH+ AT +L G + + + E LGH+ + T Y+HV Sbjct: 311 FHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHV 351 >ref|NP_852723.1|putative integrase Length = 348 Score = 50.8 bits (120), Expect = 3e-05 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 2/159 (1%) Frame = -2 Query: 25513 ILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQ-RALETWLEQG 25337 I++ TG+R++ + + + ID S R + + +K G+P +A+E + Q Sbjct: 183 IVQFAILTGLRMSNITQLKWSQIDLSKRQAWINSEQSKTGN-SIGVPLNDKAIEVIVSQF 241 Query: 25336 RPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAA-REAGVPDISPHALRHSA 25160 T K RIA RAA + AG+ D H LRH+ Sbjct: 242 GKHKENVFTYKGKP----------------VRIANTKAFRAALQRAGIKDFRFHDLRHTW 285 Query: 25159 ATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKN 25043 AT + G L +QE+ G S T ++Y H+S+E L+N Sbjct: 286 ATRHIMSGTPLYVLQELGGWSKSDTVRKYAHLSVEHLQN 324 Score = 48.1 bits (113), Expect = 2e-04 Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 3/159 (1%) Frame = -3 Query: 45105 KALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRL---VPLGSYACRAITAY 44935 K +++F TG R+S T IDL + A + + SK VPL A I + Sbjct: 181 KPIVQFAILTGLRMSNITQLKWSQIDLSKRQAWINSEQSKTGNSIGVPLNDKAIEVIVSQ 240 Query: 44934 LNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRH 44755 + + +GK + R + + +A +RAGI K H LRH Sbjct: 241 FGKHKENV---------------FTYKGKPV-RIANTKAFRAALQRAGI-KDFRFHDLRH 283 Query: 44754 SFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETL 44638 ++AT I G + +QEL G + T + Y H+S E L Sbjct: 284 TWATRHIMSGTPLYVLQELGGWSKSDTVRKYAHLSVEHL 322 >ref|NP_795429.1|putative integrase Length = 362 Score = 50.4 bits (119), Expect = 4e-05 Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 17/179 (9%) Frame = -2 Query: 25516 AILELLYATGIRVAELVSMDIADIDFSNRTIK-------------VTGKGNKQRVVPFGL 25376 A+ LL TGIR EL+++ D++ + +I VT + R++ Sbjct: 190 ALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTKTKSSDRLISLD- 248 Query: 25375 PAQRALETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGV 25196 LE LE T +F GG + + R + + + + Sbjct: 249 --DETLEILLELHETFPTSTL-----------MFQSESGGIMTPSLPRKWLLQIIKGTDL 295 Query: 25195 PDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR-YTHV---SIEQLKNRYGQ 25031 P I+ H RH+ A+ + + G L++VQ LGH L+TT YTH+ +I+ + ++ Q Sbjct: 296 PQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAIDDIGTKFNQ 354 Score = 37.4 bits (85), Expect = 0.39 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = -3 Query: 44769 HTLRHSFATHLIQGGADVRTVQELLGHASV-TTTQIYTHVSPETL 44638 H RH+ A+ L + G ++ VQ LGH + TT +YTH++ + Sbjct: 301 HGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAI 345 >ref|NP_075464.1|integrase Length = 401 Score = 50.4 bits (119), Expect = 4e-05 Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 19/170 (11%) Frame = -3 Query: 45102 ALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLNAG 44923 ++LE TG R+ E DIDL + G + R+ + + T +++ Sbjct: 218 SILEVQALTGMRIGELQALQEKDIDLLNKTINITG--TIHRIKYEEGFGYKDTTKTISSK 275 Query: 44922 RG------------------ELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGER 44797 R ++ +R ++ +R +F K+G + + ++K T + Sbjct: 276 RSISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKA 335 Query: 44796 AGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHA-SVTTTQIYTHVS 44650 + K + HT RH+ T L++ ++ + + +GH TT +IYTHV+ Sbjct: 336 LNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVT 385 Score = 45.1 bits (105), Expect = 0.002 Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 18/171 (10%) Frame = -2 Query: 25519 AAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQ 25340 A+ILE+ TG+R+ EL ++ DID N+TI +TG ++ + G + +T + Sbjct: 217 ASILEVQALTGMRIGELQALQEKDIDLLNKTINITGTIHRIKYEE-GFGYKDTTKT-ISS 274 Query: 25339 GRPVLARTATDAVKSRA----------------ANALFLGARGGRIDQRIARDIVHRAAR 25208 R + + T + + +F +G + ++ + + Sbjct: 275 KRSISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTK 334 Query: 25207 EAGV-PDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR-YTHVS 25061 + ++ H RH+ T +++ L+ + + +GH KTT R YTHV+ Sbjct: 335 ALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVT 385 >ref|NP_058467.1|integrase Length = 401 Score = 50.4 bits (119), Expect = 4e-05 Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 19/170 (11%) Frame = -3 Query: 45102 ALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLNAG 44923 ++LE TG R+ E DIDL + G + R+ + + T +++ Sbjct: 218 SILEVQALTGMRIGELQALQEKDIDLLNKTINITG--TIHRIKYEEGFGYKDTTKTISSK 275 Query: 44922 RG------------------ELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGER 44797 R ++ +R ++ +R +F K+G + + ++K T + Sbjct: 276 RSISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKA 335 Query: 44796 AGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHA-SVTTTQIYTHVS 44650 + K + HT RH+ T L++ ++ + + +GH TT +IYTHV+ Sbjct: 336 LNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVT 385 Score = 45.1 bits (105), Expect = 0.002 Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 18/171 (10%) Frame = -2 Query: 25519 AAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQ 25340 A+ILE+ TG+R+ EL ++ DID N+TI +TG ++ + G + +T + Sbjct: 217 ASILEVQALTGMRIGELQALQEKDIDLLNKTINITGTIHRIKYEE-GFGYKDTTKT-ISS 274 Query: 25339 GRPVLARTATDAVKSRA----------------ANALFLGARGGRIDQRIARDIVHRAAR 25208 R + + T + + +F +G + ++ + + Sbjct: 275 KRSISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTK 334 Query: 25207 EAGV-PDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR-YTHVS 25061 + ++ H RH+ T +++ L+ + + +GH KTT R YTHV+ Sbjct: 335 ALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVT 385 >ref|NP_663691.1|putative holin Length = 74 Score = 50.1 bits (118), Expect = 6e-05 Identities = 21/58 (36%), Positives = 33/58 (56%) Frame = +1 Query: 107464 SRVYDILKWLGLIVLPALALFVSTVGPAWGWTHVDAIVTTLNXXXXXXXXXXXVSAIK 107637 ++ Y+++KW L LPAL++F+ +G A+GW D + TLN VSA+K Sbjct: 5 NKFYNVIKWAVLTALPALSVFIGVIGKAYGWEGTDLAIITLNAFTVFLGTLAGVSAVK 62 >ref|NP_958084.1|gp27 Length = 349 Score = 50.1 bits (118), Expect = 6e-05 Identities = 47/191 (24%), Positives = 83/191 (43%) Frame = -3 Query: 45183 LTVDEVTRLLDAAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARL 45004 LT++++ +LL A G D ++E ATG R SEA + + Sbjct: 178 LTLEQIPQLLLACHQYGHEDLT-----QIVEICLATGARWSEAERLTRPQLS-PYKLTFT 231 Query: 45003 MGKGSKQRLVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVW 44824 KG K R VP+ + + L+ +G + + + ++ L L Sbjct: 232 KTKGKKNRTVPITKW----LYEKLSTRQGRMFKPCYQEF--KKMLLLT------------ 273 Query: 44823 EIVKATGERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPE 44644 +I G++ H LRH+F H + G ++ +Q++LGHA++ T Y+H +P+ Sbjct: 274 DIELTEGQKT--------HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYSHFAPD 325 Query: 44643 TLIETYLTSHP 44611 L E +T +P Sbjct: 326 HL-EQAVTLNP 335 Score = 40.8 bits (94), Expect = 0.035 Identities = 14/45 (31%), Positives = 30/45 (66%) Frame = -2 Query: 25180 HALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLK 25046 H LRH+ H + G ++ +Q++LGH++++ T +Y+H + + L+ Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYSHFAPDHLE 328 >ref|NP_612851.1|putative integrase Length = 349 Score = 50.1 bits (118), Expect = 6e-05 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 8/156 (5%) Frame = -2 Query: 25507 ELLYATGIRVAELVSMDIADIDFSNRTIKV----TGKGNKQRVVPFGLPAQRALETWLEQ 25340 E+L+ TG+R EL+++ DID N+TI + T K + P P + Sbjct: 187 EVLFWTGMRSGELMALTFNDIDLKNKTININKTYTRLNGKDIINPPKTPKSK-------- 238 Query: 25339 GRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVH---RAAREAGVPDISPHALR 25169 R V A + L+ + RI +VH R +++ +P I H LR Sbjct: 239 -RKVSIPNALCSYIETYITKLYDYNKSDRIFSFTKYFLVHEMKRVCKKSNIPIIRIHDLR 297 Query: 25168 HSAATHMLDGGADLREVQEMLGHSSLKTT-QRYTHV 25064 HS A+ +++ G + E LGH ++TT Y+H+ Sbjct: 298 HSHASLLIELGFTPLLISERLGHEKVQTTLDTYSHL 333 Score = 45.1 bits (105), Expect = 0.002 Identities = 48/179 (26%), Positives = 72/179 (40%), Gaps = 18/179 (10%) Frame = -3 Query: 45105 KALLEFMYATGCRVSEATGANLDDIDL-------DEHIARLMGKG--------SKQRLVP 44971 K E ++ TG R E +DIDL ++ RL GK +R V Sbjct: 183 KLAFEVLFWTGMRSGELMALTFNDIDLKNKTININKTYTRLNGKDIINPPKTPKSKRKVS 242 Query: 44970 LGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAG 44791 + + C I Y+ + S +I FL KR+ ++S I++ Sbjct: 243 IPNALCSYIETYITK---LYDYNKSDRIFSFTKYFLVHEMKRVCKKSNIPIIRI------ 293 Query: 44790 ITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASV-TTTQIYTHVSP--ETLIETYL 44623 H LRHS A+ LI+ G + E LGH V TT Y+H+ P +T++ L Sbjct: 294 -------HDLRHSHASLLIELGFTPLLISERLGHEKVQTTLDTYSHLYPNKDTMVSNKL 345 >ref|NP_817718.1|gp41 Length = 400 Score = 49.3 bits (116), Expect = 1e-04 Identities = 79/313 (25%), Positives = 122/313 (38%), Gaps = 38/313 (12%) Frame = -3 Query: 45459 ATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAG-ESARSKARRLASI 45283 A +TV YE + I+ L G E +TK+ ++D + AL + G S K R+ S Sbjct: 95 AESTVDGYEEKLTVVIEQL---GEIEIQKLTKRHLDDLVTALREGGLPSPNGKPRKPWSP 151 Query: 45282 HEFHRFALG-----------QHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDAAAVG 45136 + + LG Q +V+A V + T PD LT EV LL A + Sbjct: 152 RSVN-YLLGLLVSILESEQKQGHTVRNVAALVDRIEANPTPPDPLTESEVETLL--AHIA 208 Query: 45135 GSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMG----KGSKQ----- 44983 G + + G R++E +G D+DLD + +G K+ Sbjct: 209 GDRYAIAWE-------LALAGFRLAEISGLRWCDVDLDARTVTVQNTRLQRGKKRIEKTP 261 Query: 44982 ------RLVPLGS------YACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRIS 44839 R +PL A R I A GE + S + +N+ G ++ Sbjct: 262 KSRASRRELPLPDDLFAAFKAARKIQAADQLRLGEAYEASGYVV-------VNEAGTPLT 314 Query: 44838 RQSV---W-EIVKATGERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHAS-VTT 44674 ++ W ++KA G R + H RH+ T + G + LGHAS T Sbjct: 315 PNAIENRWARVLKAAGLRH-----VRLHDARHTCGTLMHLRGVPTALISAWLGHASKAFT 369 Query: 44673 TQIYTHVSPETLI 44635 Q Y + PE+L+ Sbjct: 370 LQTYVNPKPESLV 382 >ref|NP_835731.1|similar to RNA polymerase ECF-type sigma factor Length = 199 Score = 48.5 bits (114), Expect = 2e-04 Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 4/174 (2%) Frame = -3 Query: 54057 RFEQLAMPAVNALYRQAMRLTNDPDDAQDLVQDTFERGFKAFDSFQ--PGSNFEAWMTTI 53884 R+E L L + T + +D+VQDTF R + FDS+ G++F ++ T+ Sbjct: 24 RYEVLYSRYAERLKNFGKKYTKSEHEIEDMVQDTFLRLLR-FDSYSVVEGASFATYIYTV 82 Query: 53883 ERNAYFNQYAKAKRRPQRANDSTGEYDDWDIYDAAEHTSDGLKSAEEEYLDAFAPEEIMA 53704 ++ +Y RR R + D D G +E+Y A E I Sbjct: 83 FKSVVITRYRYNSRRGPRIYMEEITFGD---RDTPVEIESGEPLLDEQYELKRAVEVIQE 139 Query: 53703 ALAKLSPERRQVFID--AAIDGKSYQQVADEQGVKIGTVMSRLNRARTQLKREL 53548 L K + + + Q +A++ + IGTV SR+NRAR +L+ L Sbjct: 140 ELEKGDNPFYNIMKQYMELKEKCAMQALAEKNNIPIGTVKSRINRARHRLREAL 193 >ref|NP_612875.1|putative recombinase Length = 181 Score = 48.5 bits (114), Expect = 2e-04 Identities = 39/187 (20%), Positives = 78/187 (41%), Gaps = 3/187 (1%) Frame = -2 Query: 25591 NRSEAPARADKRDNARVTAESQRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTG 25412 N S+ A A+K + +S+RN + + +G+R+++++ + + D+ + Sbjct: 9 NSSDVNALANK-----LRKDSERNYIMFIIGIYSGLRISDILRLRVRDVKGKEQIAIREK 63 Query: 25411 KGNKQRVVPFGLPAQRALETWLEQGRPVLARTATDAVKSRAANALFLGARGG---RIDQR 25241 K KQ++ P P+L + + + + +R G I + Sbjct: 64 KTGKQKMFPIN---------------PILKKELKKYCSDKELDEFLIKSRNGYNRAIGRE 108 Query: 25240 IARDIVHRAAREAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 25061 A I+ A E G+ +++ H LR + H D+ E+Q++ HS T RY V Sbjct: 109 RAYTILREAGEELGIYNLATHTLRKTFGYHYYMQYNDIAELQKIFNHSDPAVTLRYIGVE 168 Query: 25060 IEQLKNR 25040 ++ R Sbjct: 169 KSRIDRR 175 Score = 45.8 bits (107), Expect = 0.001 Identities = 35/142 (24%), Positives = 58/142 (40%) Frame = -3 Query: 45078 TGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLNAGRGELEQRS 44899 +G R+S+ + D+ E IA K KQ++ P+ + + Y S Sbjct: 37 SGLRISDILRLRVRDVKGKEQIAIREKKTGKQKMFPINPILKKELKKYC----------S 86 Query: 44898 SAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSFATHLIQGGAD 44719 ++ E N + I R+ + I++ GE GI L HTLR +F H D Sbjct: 87 DKELDEFLIKSRNGYNRAIGRERAYTILREAGEELGIYN-LATHTLRKTFGYHYYMQYND 145 Query: 44718 VRTVQELLGHASVTTTQIYTHV 44653 + +Q++ H+ T Y V Sbjct: 146 IAELQKIFNHSDPAVTLRYIGV 167 >ref|NP_076698.1|repressor Length = 278 Score = 48.5 bits (114), Expect = 2e-04 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Frame = +2 Query: 127784 DVPLVGRIAAGVPITAEQHVDDVMRLPER-LTGSGTLFMLEVHGDSMVDAAICDGDYVVV 127960 DVP++GRIAAG+P+ A ++ D +P L+ + + L V G SM + I G YV++ Sbjct: 153 DVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSM-EPKIPFGSYVLI 211 Query: 127961 REQNSAVNGDIVAALLDD--EATVKTFRKENGHVWLMPHNPAYSPIDGTH---ATIMGKV 128125 +G I A L D +AT+K E + L+ N + T A ++G+ Sbjct: 212 EAVPDVTDGTIGAVLFQDDCQATLKKVYHEIDCLRLVSINKEFKDQFATQDNPAAVIGQA 271 Query: 128126 VTV 128134 V V Sbjct: 272 VKV 274 >ref|NP_695031.1|Repressor Length = 278 Score = 47.8 bits (112), Expect = 3e-04 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 6/130 (4%) Frame = +2 Query: 127763 EAIAESHDVPLVGRIAAGVPITAEQHVDDVMRLPER-LTGSGTLFMLEVHGDSMVDAAIC 127939 EA + DVP++GRIAAG+P+ A ++ D +P L+ + + L V G SM + I Sbjct: 146 EADEDMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSM-EPKIP 204 Query: 127940 DGDYVVVREQNSAVNGDIVAALLDD--EATVKTFRKENGHVWLMPHNPAYSPIDGTH--- 128104 G YV++ +G I A L D +AT+K E + L+ N + T Sbjct: 205 YGAYVLIEAVPDVSDGTIGAVLFHDDCQATLKKVYHEIDCLRLVSINKEFKDQFATQDNP 264 Query: 128105 ATIMGKVVTV 128134 A ++G+ V V Sbjct: 265 AAVIGQAVKV 274 >ref|NP_438114.1|integrase-like protein Length = 365 Score = 47.4 bits (111), Expect = 4e-04 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 7/164 (4%) Frame = -2 Query: 25513 ILELLYATGIRVAELVSMDIADIDFSNRTIKVTG-----KGNKQRVVPFGLPAQRALETW 25349 I LL G R+ EL+++ D DF N TI +T K P + R + Sbjct: 198 IYRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIAYTKEGWAVQSPKTKKSNRTIS-- 255 Query: 25348 LEQGRPVLART-ATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHAL 25172 ++ LA+ ++K + + +R+ R I+ G+ I+PH Sbjct: 256 MDAETMSLAKLYIKQSIKPLHGSFKLFNFASDTVRKRLDRFILKH-----GLKRITPHGF 310 Query: 25171 RHSAATHMLDGGADLREVQEMLGHSSLK-TTQRYTHVSIEQLKN 25043 RH+ A+ + + G + QE LGH+ + T YTH+S + N Sbjct: 311 RHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLSKKSKDN 354 Score = 41.2 bits (95), Expect = 0.027 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Frame = -3 Query: 44784 KPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVT-TTQIYTHVSPET 44641 K + PH RH+ A+ L + G + QE LGHA + T +YTH+S ++ Sbjct: 303 KRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLSKKS 351 >ref|NP_795541.1|putative integrase Length = 384 Score = 47.4 bits (111), Expect = 4e-04 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 7/164 (4%) Frame = -2 Query: 25513 ILELLYATGIRVAELVSMDIADIDFSNRTIKVTG-----KGNKQRVVPFGLPAQRALETW 25349 I LL G R+ EL+++ D DF N TI +T K P + R + Sbjct: 217 IYRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIAYTKEGWAVQSPKTKKSNRTIS-- 274 Query: 25348 LEQGRPVLART-ATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHAL 25172 ++ LA+ ++K + + +R+ R I+ G+ I+PH Sbjct: 275 MDAETMSLAKLYIKQSIKPLHGSFKLFNFASDTVRKRLDRFILKH-----GLKRITPHGF 329 Query: 25171 RHSAATHMLDGGADLREVQEMLGHSSLK-TTQRYTHVSIEQLKN 25043 RH+ A+ + + G + QE LGH+ + T YTH+S + N Sbjct: 330 RHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLSKKSKDN 373 Score = 41.2 bits (95), Expect = 0.027 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Frame = -3 Query: 44784 KPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVT-TTQIYTHVSPET 44641 K + PH RH+ A+ L + G + QE LGHA + T +YTH+S ++ Sbjct: 322 KRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLSKKS 370 >ref|NP_116527.1|cI repressor Length = 297 Score = 47.4 bits (111), Expect = 4e-04 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Frame = +2 Query: 127784 DVPLVGRIAAGVPITAEQHVDDVMRLPER-LTGSGTLFMLEVHGDSMVDAAICDGDYVVV 127960 DVP++GRIAAG+P+ A ++ D +P L+ + + L V G SM + I G YV++ Sbjct: 172 DVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSM-EPKIPYGAYVLI 230 Query: 127961 REQNSAVNGDIVAALLDD--EATVKTFRKENGHVWLMPHNPAYSPIDGTH---ATIMGKV 128125 +G I A L D +AT+K E + L+ N + T A ++G+ Sbjct: 231 EAVPDVTDGTIGAVLFHDDCQATLKKVYHEIDCLRLVSINKEFKDQFATQDNPAAVIGQA 290 Query: 128126 VTV 128134 V V Sbjct: 291 VKV 293 >ref|NP_695029.1|Integrase Length = 374 Score = 47.4 bits (111), Expect = 4e-04 Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 15/167 (8%) Frame = -3 Query: 45099 LLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLV-----PLGSYACRAITA- 44938 +L + TG R SEA G DDI D ++ + + + V P R I Sbjct: 193 MLFIISITGMRASEAFGLVWDDIKFDNNVIKCHRTWNYRNKVGGFKKPKTDAGIRDIVID 252 Query: 44937 --------YLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITK 44782 Y + L + K P + + K I+ ++ ++ ++ I+ Sbjct: 253 DESMQLLKYFREQQKTLFESLGIK-PIHDFVCYHPYRKIITLSALQNTLEHALKKLKIST 311 Query: 44781 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVT-TTQIYTHVSPE 44644 PL H LRH+ A+ L+ G D+ TV + LGHASV T Q Y H+ E Sbjct: 312 PLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHIIKE 358 Score = 39.3 bits (90), Expect = 0.10 Identities = 20/51 (39%), Positives = 35/51 (68%), Gaps = 1/51 (1%) Frame = -2 Query: 25189 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR-YTHVSIEQLKNR 25040 ++ H LRH+ A+ +L G D+ V + LGH+S+ TQ+ Y H+ I++L+N+ Sbjct: 313 LTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI-IKELENK 362 >ref|NP_536807.1|integrase Length = 337 Score = 47.0 bits (110), Expect = 5e-04 Identities = 17/44 (38%), Positives = 29/44 (65%) Frame = -3 Query: 44769 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETL 44638 H LRH+FA+H + G ++ ++E+LGH+++ T Y H +P L Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHL 323 Score = 43.9 bits (102), Expect = 0.004 Identities = 17/46 (36%), Positives = 31/46 (67%) Frame = -2 Query: 25180 HALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKN 25043 H LRH+ A+H + G ++ ++E+LGHS+++ T RY H + L++ Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLES 325 >ref|NP_043466.1|integrase Length = 337 Score = 47.0 bits (110), Expect = 5e-04 Identities = 17/44 (38%), Positives = 29/44 (65%) Frame = -3 Query: 44769 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETL 44638 H LRH+FA+H + G ++ ++E+LGH+++ T Y H +P L Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHL 323 Score = 43.9 bits (102), Expect = 0.004 Identities = 17/46 (36%), Positives = 31/46 (67%) Frame = -2 Query: 25180 HALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKN 25043 H LRH+ A+H + G ++ ++E+LGHS+++ T RY H + L++ Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLES 325 >ref|NP_108682.1|cI2009 Length = 286 Score = 47.0 bits (110), Expect = 5e-04 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Frame = +2 Query: 127784 DVPLVGRIAAGVPITAEQHVDDVMRLPER-LTGSGTLFMLEVHGDSMVDAAICDGDYVVV 127960 DVP++GRIAAG+P+ A ++ D +P L+ + + L V G SM + I G YV++ Sbjct: 161 DVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSM-EPKIPYGAYVLI 219 Query: 127961 REQNSAVNGDIVAALLDD--EATVKTFRKENGHVWLMPHNPAYSPIDGTH---ATIMGKV 128125 +G I A L D +AT+K E + L+ N + T A ++G+ Sbjct: 220 EAVPDVSDGTIGAVLFQDDCQATLKKVYHEIDCLRLVSINKEFKDQFATQDNPAAVIGQA 279 Query: 128126 VTV 128134 V V Sbjct: 280 VKV 282 >ref|NP_150133.1|integrase Length = 375 Score = 46.6 bits (109), Expect = 6e-04 Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 12/157 (7%) Frame = -3 Query: 45078 TGCRVSEATGANLDDIDLDEHIARLMGKG---SKQRLVPLGSYACRAITAYLNAGRGELE 44908 TG R E T L +ID + + + G +K + +P + + R I ++ E Sbjct: 208 TGMRYGELTALQLKNIDFETNKIEITGNFDSVNKIKTLPKTTNSIRTIK--VSESVIEAI 265 Query: 44907 QRSSAKIPER--------RALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHS 44752 QR ++ ER K + + +I+K G++A I K L H RHS Sbjct: 266 QRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQILKKYGKQAKIEKNLSSHIFRHS 325 Query: 44751 FATHLIQGGADVRTVQELLGHASV-TTTQIYTHVSPE 44644 + L + G ++++ + +GH++ T +IY+H + + Sbjct: 326 HISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTTED 362 >ref|NP_511007.1|integrase Length = 384 Score = 46.6 bits (109), Expect = 6e-04 Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 18/170 (10%) Frame = -2 Query: 25516 AILELLYATGIRVAELVSMDIADIDFSNRTIKVTG-------------KGNKQRVVPFGL 25376 A++ L TG+R E++++ DI+F+ R+I V K K RV+ Sbjct: 188 AVIFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTFIDTKTKKSRVIYIDN 247 Query: 25375 PAQRALETWLEQGRPVLARTATDAVKSRAAN----ALFLGARGGRIDQRIARDIVHRAAR 25208 + L ++L TD +K A LF+ +D + + Sbjct: 248 STAQYLHSYLNWH--------TDYMKEHAIKNPLMLLFITYHNKPVDNASCNKALKKICS 299 Query: 25207 EAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR-YTHVS 25061 ++ H LRH+ ++ G D+ V + LGH + TT + Y+H+S Sbjct: 300 TINSEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLS 349 Score = 45.8 bits (107), Expect = 0.001 Identities = 56/283 (19%), Positives = 117/283 (41%), Gaps = 15/283 (5%) Frame = -3 Query: 45453 ATVTAYESDIAKYIDWLETR-GIHEPDAITKQDVEDYIAALDQAGESARSKARRLASIHE 45277 +T+ Y+ +++D+ + + ++ DA+ Q ++++ +D A + ++ R++ +I Sbjct: 78 STINLYDLAYNQFVDYFDEKIKLNSIDAVQYQQFINHLS-VDYAISTVDTRHRKIRAIFN 136 Query: 45276 FHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDAAAVGGSTDPVVLRDKAL 45097 LG + A + A + D+V LL+ A S +A+ Sbjct: 137 -KAVHLGYMKKNPTIGAHISGQDVAKNKAQFMETDKVHLLLEELAKFHSIS------RAV 189 Query: 45096 LEFMYATGCRVSEATGANLDDIDLDEHIARLMG-------------KGSKQRLVPLGSYA 44956 + TG R E DI+ + + K K R++ + + Sbjct: 190 IFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTFIDTKTKKSRVIYIDNST 249 Query: 44955 CRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPL 44776 + + +YLN +++ + K P LF+ K + S + +K ++P+ Sbjct: 250 AQYLHSYLNWHTDYMKEHA-IKNP-LMLLFITYHNKPVDNASCNKALKKICSTIN-SEPV 306 Query: 44775 HPHTLRHSFATHLIQGGADVRTVQELLGHASVTTT-QIYTHVS 44650 H LRH+ ++ G D+ V + LGH + TT + Y+H+S Sbjct: 307 TLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLS 349 >ref|NP_996677.1|phage repressor Length = 286 Score = 46.6 bits (109), Expect = 6e-04 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Frame = +2 Query: 127784 DVPLVGRIAAGVPITAEQHVDDVMRLPER-LTGSGTLFMLEVHGDSMVDAAICDGDYVVV 127960 DVP++GRIAAG+P+ A ++ D +P L+ + + L V G SM + I G YV++ Sbjct: 161 DVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSM-EPKIPYGAYVLI 219 Query: 127961 REQNSAVNGDIVAALLDD--EATVKTFRKENGHVWLMPHNPAYSPIDGTH---ATIMGKV 128125 +G I A L D +AT+K E + L+ N + T A ++G+ Sbjct: 220 EAVPDVSDGTIGAVLFHDDCQATLKKVYHEIDCLRLVSINKEFKDQFATQDNPAAVIGQA 279 Query: 128126 VTV 128134 V V Sbjct: 280 VKV 282 >ref|NP_996675.1|integrase Length = 374 Score = 46.6 bits (109), Expect = 6e-04 Identities = 47/183 (25%), Positives = 73/183 (39%), Gaps = 31/183 (16%) Frame = -3 Query: 45099 LLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLNAGR 44920 +L + TG R SEA G DDID + + + CR Y N Sbjct: 193 MLFIISITGMRASEAFGLVWDDIDFNNNTIK-----------------CRRTWNYRNKVG 235 Query: 44919 GELEQRSSAKI-----------------PERRALF-------------LNKRGKRISRQS 44830 G + ++ A I +++ LF + K I+ + Sbjct: 236 GFKKPKTDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSA 295 Query: 44829 VWEIVKATGERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVT-TTQIYTHV 44653 + ++ ++ I+ PL H LRH+ A+ L+ G D+ TV + LGHASV T Q Y H+ Sbjct: 296 LQNTLEHALKKLKISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI 355 Query: 44652 SPE 44644 E Sbjct: 356 IKE 358 Score = 43.1 bits (100), Expect = 0.007 Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 17/175 (9%) Frame = -2 Query: 25513 ILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGN-KQRVVPFGLP------------ 25373 +L ++ TG+R +E + DIDF+N TIK N + +V F P Sbjct: 193 MLFIISITGMRASEAFGLVWDDIDFNNNTIKCRRTWNYRNKVGGFKKPKTDAGIRDIVID 252 Query: 25372 --AQRALETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAG 25199 + + L+ + EQ + + + + I ++ + A ++ Sbjct: 253 DESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKI----ITLSALQNTLEHALKKLK 308 Query: 25198 VPD-ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR-YTHVSIEQLKNR 25040 + ++ H LRH+ A+ +L G D+ V + LGH+S+ TQ+ Y H+ I++L+N+ Sbjct: 309 ISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI-IKELENK 362 >ref|NP_076573.1|integrase Length = 374 Score = 46.6 bits (109), Expect = 6e-04 Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 31/183 (16%) Frame = -3 Query: 45099 LLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLNAGR 44920 +L + TG R SEA G DDID + + + CR Y N Sbjct: 193 MLFIISITGMRASEAFGLVWDDIDFNNNTIK-----------------CRRTWNYRNKVG 235 Query: 44919 GELEQRSSAKI-----------------PERRALF-------------LNKRGKRISRQS 44830 G + ++ A I +++ LF + K I+ + Sbjct: 236 GFKKPKTDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSA 295 Query: 44829 VWEIVKATGERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVT-TTQIYTHV 44653 + + ++ I+ PL H LRH+ A+ L+ G D+ TV + LGHASV T Q Y H+ Sbjct: 296 LQNTLDHALKKLNISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI 355 Query: 44652 SPE 44644 E Sbjct: 356 IKE 358 Score = 43.9 bits (102), Expect = 0.004 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 21/179 (11%) Frame = -2 Query: 25513 ILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGN-KQRVVPFGLP------------ 25373 +L ++ TG+R +E + DIDF+N TIK N + +V F P Sbjct: 193 MLFIISITGMRASEAFGLVWDDIDFNNNTIKCRRTWNYRNKVGGFKKPKTDAGIRDIVID 252 Query: 25372 --AQRALETWLEQGRPVLARTATDAVKSRAA-----NALFLGARGGRIDQRIARDIVHRA 25214 + + L+ + EQ + + + + L A +D + + + Sbjct: 253 DESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLDHALKKLNISTP 312 Query: 25213 AREAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR-YTHVSIEQLKNR 25040 ++ H LRH+ A+ +L G D+ V + LGH+S+ TQ+ Y H+ I++L+N+ Sbjct: 313 --------LTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI-IKELENK 362 >ref|NP_116524.1|integrase Length = 374 Score = 46.2 bits (108), Expect = 8e-04 Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 31/183 (16%) Frame = -3 Query: 45099 LLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLNAGR 44920 +L + TG R SEA G DDID + + + CR Y N Sbjct: 193 MLFIISITGMRASEAFGLVWDDIDFNNNTIK-----------------CRRTWNYRNKVG 235 Query: 44919 GELEQRSSAKI-----------------PERRALF-------------LNKRGKRISRQS 44830 G + ++ A I +++ LF + K I+ + Sbjct: 236 GFKKPKTDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSA 295 Query: 44829 VWEIVKATGERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVT-TTQIYTHV 44653 + + ++ I+ PL H LRH+ A+ L+ G D+ TV + LGHASV T Q Y H+ Sbjct: 296 LQNTLDHALKKLNISTPLTIHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI 355 Query: 44652 SPE 44644 E Sbjct: 356 IKE 358 Score = 43.5 bits (101), Expect = 0.005 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 21/179 (11%) Frame = -2 Query: 25513 ILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGN-KQRVVPFGLP------------ 25373 +L ++ TG+R +E + DIDF+N TIK N + +V F P Sbjct: 193 MLFIISITGMRASEAFGLVWDDIDFNNNTIKCRRTWNYRNKVGGFKKPKTDAGIRDIVID 252 Query: 25372 --AQRALETWLEQGRPVLARTATDAVKSRAA-----NALFLGARGGRIDQRIARDIVHRA 25214 + + L+ + EQ + + + + L A +D + + + Sbjct: 253 DESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLDHALKKLNISTP 312 Query: 25213 AREAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR-YTHVSIEQLKNR 25040 ++ H LRH+ A+ +L G D+ V + LGH+S+ TQ+ Y H+ I++L+N+ Sbjct: 313 --------LTIHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI-IKELENK 362 >ref|NP_108680.1|integrase Length = 374 Score = 46.2 bits (108), Expect = 8e-04 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Frame = -3 Query: 44802 ERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVT-TTQIYTHVSPE 44644 ++ I+ PL H LRH+ A+ L+ G D+ TV + LGHASV T Q Y H+ E Sbjct: 305 KKLNISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHIIKE 358 Score = 41.6 bits (96), Expect = 0.021 Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 21/179 (11%) Frame = -2 Query: 25513 ILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGN-KQRVVPFGLP------------ 25373 +L ++ T +R +E + DIDF+N TIK N + +V F P Sbjct: 193 MLFIISITSMRASEAFGLVWDDIDFNNNTIKCRRTWNYRNKVGGFKKPKTDAGIRDIVID 252 Query: 25372 --AQRALETWLEQGRPVLARTATDAVKSRAA-----NALFLGARGGRIDQRIARDIVHRA 25214 + + L+ + EQ + + + + L A +D + + + Sbjct: 253 DESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLDHALKKLNISTP 312 Query: 25213 AREAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR-YTHVSIEQLKNR 25040 ++ H LRH+ A+ +L G D+ V + LGH+S+ TQ+ Y H+ I++L+N+ Sbjct: 313 --------LTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI-IKELENK 362 >ref|NP_818386.1|gp85 Length = 424 Score = 45.4 bits (106), Expect = 0.001 Identities = 66/271 (24%), Positives = 108/271 (39%), Gaps = 26/271 (9%) Frame = -3 Query: 45372 ITKQDVEDYIAALDQAGESARS-----KARRLASIH----EFHRFALGQHAVTADVSAAV 45220 I + ++D++ L GE A R IH ++AL + + + + Sbjct: 148 IDHESLQDWVNELSTTGEYRTKGEGGFSASRTIQIHLVVNGVMKYALRTDRILKNPAEGL 207 Query: 45219 KAP-KGASTLPDVLTVDEVTRLLDAAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGAN 45043 + P K +T LT ++ AA +G R + L + G R SEA GA Sbjct: 208 ELPTKRKNTRQRYLTHKQLQEF--AAEMG--------RFEGLTLLLGYCGARTSEAFGAR 257 Query: 45042 LDDI-----DLDEHIARLMGKGSKQ---RLVPLGSYACRAITAYLNAG-------RGELE 44908 D +L I R + K +K R +P+ I N RG + Sbjct: 258 GRDFRGRIWELYGAIVRNVEKDTKTHRARFIPIPDVVWNKIQMPANPDALVFPGRRGHIT 317 Query: 44907 QRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSFATHLIQG 44728 + + +R +++ + + E +AT + PH LRH+ A+ I Sbjct: 318 NGEYRWAFDGALRTMQERTEKLRAEEIAETGRAT---TPAFPRITPHDLRHTCASLAISS 374 Query: 44727 GADVRTVQELLGHA-SVTTTQIYTHVSPETL 44638 GA+V+ VQ LLGHA +V T +Y H+ + L Sbjct: 375 GANVKAVQNLLGHATAVMTLDLYGHLLSDDL 405 Score = 40.8 bits (94), Expect = 0.035 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Frame = -2 Query: 25195 PDISPHALRHSAATHMLDGGADLREVQEMLGH-SSLKTTQRYTHVSIEQL 25049 P I+PH LRH+ A+ + GA+++ VQ +LGH +++ T Y H+ + L Sbjct: 356 PRITPHDLRHTCASLAISSGANVKAVQNLLGHATAVMTLDLYGHLLSDDL 405 >ref|NP_945090.1|gp59 Length = 429 Score = 45.4 bits (106), Expect = 0.001 Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 20/203 (9%) Frame = -3 Query: 32580 HRKLLVASGIGWAFDAMDVGLVSFVVAAIAADPHFNLTPTEKSWVLSIGFVGMA-----I 32416 HR+ ++A +G F+ D SF + I A F T S +LS+ +G+ I Sbjct: 19 HRRAVIAVIVGNGFEWFDFISYSFF-SVIIAKLFFPSTDDNLSLLLSVSTIGVGFFMRPI 77 Query: 32415 GAAVGGFIADRVGRKTVFTATLIIF--GIANGAMALSWSXXXXXXXXXXXXXXXXXXLPV 32242 G V G IAD+VGR+ T T+ + G A A ++ Sbjct: 78 GGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSA 137 Query: 32241 ------ASTLVSEFSPTKQRGRMTVLLESFWAVGWIVAAMIGYFVI-----PNTGDWGWR 32095 A+ + E P ++ G T +++ I+A+++ F++ WGWR Sbjct: 138 GGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWR 197 Query: 32094 --WALAIGALPLLYAIVTRVHIP 32032 + L +G P+ I +R++ P Sbjct: 198 IPFLLGLGLGPVGIYIRSRLNDP 220 >ref|YP_025047.1|putative integrase Length = 389 Score = 45.4 bits (106), Expect = 0.001 Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 24/203 (11%) Frame = -2 Query: 25564 DKRDNARVTA-----ESQRNAAILELLYA--TGIRVAELVSMDIADIDFSNRTIKVTGKG 25406 D D A+V A S RN L + TG+R++E++++ DID I VT Sbjct: 183 DSHDFAKVKAIAIERASYRNIGALAVYIGSMTGMRISEVLALTWPDIDTKLGVIHVTRSW 242 Query: 25405 NKQRVVPFGLPAQRALETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARD- 25229 + F P + + P + + +AA+ L G R DQ I RD Sbjct: 243 DHLYGTGFK-PTKTDSSVRDIEISPSVIELLNKIHQEQAASYLRTGYRDE--DQMIMRDP 299 Query: 25228 ------------IVHRAAREAGVPD---ISPHALRHSAATHMLDGGADLREVQEMLGHSS 25094 +H +A +P+ I+ H LRHS ++++ G D+ + + LGHS Sbjct: 300 RHNVITDSACNKALHVIQNKAEIPENKQITFHGLRHSHVSYLISKGVDIYYISKRLGHSD 359 Query: 25093 LKTTQR-YTHVSIEQLKNRYGQA 25028 + T + Y H+ Q K +A Sbjct: 360 VTITMKVYGHLLDSQRKQEAHKA 382 Score = 39.3 bits (90), Expect = 0.10 Identities = 34/150 (22%), Positives = 69/150 (46%), Gaps = 3/150 (2%) Frame = -3 Query: 45093 EFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLNAGRGE 44914 + +Y TG + ++ T +++ DI++ + L+ K +++ +YL G + Sbjct: 243 DHLYGTGFKPTK-TDSSVRDIEISPSVIELLNKIHQEQAA-----------SYLRTGYRD 290 Query: 44913 LEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGI--TKPLHPHTLRHSFATH 44740 +Q + + R I+ + + + +A I K + H LRHS ++ Sbjct: 291 EDQM----------IMRDPRHNVITDSACNKALHVIQNKAEIPENKQITFHGLRHSHVSY 340 Query: 44739 LIQGGADVRTVQELLGHASVT-TTQIYTHV 44653 LI G D+ + + LGH+ VT T ++Y H+ Sbjct: 341 LISKGVDIYYISKRLGHSDVTITMKVYGHL 370 >ref|NP_599074.1|unknown Length = 108 Score = 43.9 bits (102), Expect = 0.004 Identities = 22/65 (33%), Positives = 37/65 (56%) Frame = +2 Query: 127466 STLTDRQRKVLDAIRTHIDEQGFAPSFREIGNAAGLKSPSSVKHQLQVLEDKGFIRMNAN 127645 +TLT Q++VLD + ++ E+GF P+ +E+ G +S ++ L+ LE KG I + Sbjct: 2 TTLTQCQQQVLDMLISYQKERGFPPTNQEVATMLGYRSVNAAVEHLRALEKKGIITIKRG 61 Query: 127646 KGRAI 127660 R I Sbjct: 62 VARGI 66 >ref|YP_164382.1|integrase Length = 369 Score = 43.9 bits (102), Expect = 0.004 Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 15/173 (8%) Frame = -2 Query: 25513 ILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGR 25334 I+ L +G+R AE+V + D DF TI + + + G + ++ Sbjct: 192 IILLALTSGMRFAEIVGLKREDFDFKQNTISINKTWGYTKKMHEGFGPTKNEQS------ 245 Query: 25333 PVLARTATDAVKSRAANALF--------------LGARGGRIDQRIARDIVHRAAREAGV 25196 + + D +A N LF ++ I A ++ E + Sbjct: 246 --VRKIKMDVQTMKAFNNLFDMLPENIHQLVFYSPSSKYKVISNGNANKLLKSLLGELKI 303 Query: 25195 PDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTT-QRYTHVSIEQLKNR 25040 IS H LRH+ A+ +L G + V E LGH+ ++TT Y H+ +++L+ + Sbjct: 304 EPISMHGLRHTHASVLLYKGVSIYYVSERLGHADIETTMNEYAHI-VKELRTQ 355 Score = 37.7 bits (86), Expect = 0.30 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = -3 Query: 44784 KPLHPHTLRHSFATHLIQGGADVRTVQELLGHASV-TTTQIYTHVSPE 44644 +P+ H LRH+ A+ L+ G + V E LGHA + TT Y H+ E Sbjct: 304 EPISMHGLRHTHASVLLYKGVSIYYVSERLGHADIETTMNEYAHIVKE 351 >ref|NP_777346.1|hypothetical protein Length = 395 Score = 43.5 bits (101), Expect = 0.005 Identities = 60/230 (26%), Positives = 101/230 (43%), Gaps = 16/230 (6%) Frame = -3 Query: 45285 IHEFHRFALGQHAVTADV-----SAAVKAPKGASTLP-DVLTVDEVTRLLDAAAVGGSTD 45124 I++F R AL + A+ AD+ AV P+G + P +EV R L+A+ G Sbjct: 137 IYQFLRAAL-RDAMRADLLDQNPMDAVDPPRGGAVRPAKAWKPEEVARFLEASK-GHRLY 194 Query: 45123 PVVLRDKALLEFMYATGCRVSEATGANLDDIDLDE-HIARLMGK-GSKQRLVPLGSYA-- 44956 P L M AT R EA +D + D H+ + + G+ GS A Sbjct: 195 P-------LFALMLATRLRPGEALALRWEDWEGDVLHVRHTLRRDGTLGPAKTPGSVAPI 247 Query: 44955 -----CRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAG 44791 +A+ A+ R E E+ S+ + +F + +G + + A E+AG Sbjct: 248 YLDPDTQALLAWWRE-RLEEEKASTPDWQDHGLMFPSSKGTPLEYNNFKRAFYALQEKAG 306 Query: 44790 ITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVT-TTQIYTHVSPE 44644 +++ + PH LRH++ + ++ G + V L HA T T ++Y + E Sbjct: 307 VSR-ITPHGLRHTYTSLALRAGLPPKVVAARLRHADPTFTVKVYQQLMEE 355 >ref|NP_680502.1|integrase Length = 385 Score = 43.1 bits (100), Expect = 0.007 Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 24/189 (12%) Frame = -2 Query: 25558 RDNARVTAESQRNAAIL-ELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVV-- 25388 RD A QR A ++ + +G R+ E+ + DID TI + K K R V Sbjct: 183 RDYVDQFANPQRIALMMVQTAIYSGARLGEIGGLTWEDIDEKKSTISID-KTFKYRFVIR 241 Query: 25387 -----------PFGLPAQRALETWLEQGRPVLARTA-----TDAVKS--RAANALFLGAR 25262 FG P + + PVL + D +K+ + LFLG Sbjct: 242 NADGSWPDREKVFG-PTKTPSSVRTIKVSPVLIASLHKLILADRIKAINNPYHLLFLGPT 300 Query: 25261 GGRIDQRIARDIVHRAAREAGV--PDISPHALRHSAATHMLDGGADLREVQEMLGHSSLK 25088 G I + RA + G+ P H LRH+ +++L G D++ V LGH ++ Sbjct: 301 GLPIYSNGVNKELRRALKHLGIERPGFGFHGLRHTHGSYLLYKGLDIQYVSHRLGHENVG 360 Query: 25087 -TTQRYTHV 25064 TT+ YTH+ Sbjct: 361 ITTKIYTHL 369 Score = 43.1 bits (100), Expect = 0.007 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Frame = -3 Query: 44871 LFLNKRGKRISRQSVWEIVKATGERAGITKP-LHPHTLRHSFATHLIQGGADVRTVQELL 44695 LFL G I V + ++ + GI +P H LRH+ ++L+ G D++ V L Sbjct: 295 LFLGPTGLPIYSNGVNKELRRALKHLGIERPGFGFHGLRHTHGSYLLYKGLDIQYVSHRL 354 Query: 44694 GHASV-TTTQIYTHV 44653 GH +V TT+IYTH+ Sbjct: 355 GHENVGITTKIYTHL 369 >ref|NP_076696.1|integrase Length = 377 Score = 43.1 bits (100), Expect = 0.007 Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 14/159 (8%) Frame = -3 Query: 45078 TGCRVSEATGANLDDIDLDE---HIARLMG----------KGSKQRLVPLGSYACRAITA 44938 TG R SE G D++D ++ ++ R R + + S + + Sbjct: 202 TGMRFSELLGLTWDNVDFEKGQIYVKRTWDIYKNNFAPTKNDQSVRFLAIDSSTMQVMIN 261 Query: 44937 YLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLR 44758 Y L++ PE +F N + I+ S+ + ++ ++ G K + H LR Sbjct: 262 YKEQQEKLLKRLEIE--PEHPFVFYNIKNGLITNNSLNKQLRNMCKKLGFKKIITCHGLR 319 Query: 44757 HSFATHLIQGGADVRTVQELLGHASVTTT-QIYTHVSPE 44644 H+ A+ ++ G ++ V + LGH+S+ T +Y+H+ E Sbjct: 320 HTHASTMLYKGINILYVSKRLGHSSLNVTMSVYSHILKE 358 Score = 40.4 bits (93), Expect = 0.046 Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 15/158 (9%) Frame = -2 Query: 25492 TGIRVAELVSMDIADIDFSNRTIKV-------------TGKGNKQRVVPFGLPAQRALET 25352 TG+R +EL+ + ++DF I V T R + + + Sbjct: 202 TGMRFSELLGLTWDNVDFEKGQIYVKRTWDIYKNNFAPTKNDQSVRFLAIDSSTMQVMIN 261 Query: 25351 WLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDI-SPHA 25175 + EQ +L R + +F + G I + ++ G I + H Sbjct: 262 YKEQQEKLLKRLEIEPEHP----FVFYNIKNGLITNNSLNKQLRNMCKKLGFKKIITCHG 317 Query: 25174 LRHSAATHMLDGGADLREVQEMLGHSSLKTTQR-YTHV 25064 LRH+ A+ ML G ++ V + LGHSSL T Y+H+ Sbjct: 318 LRHTHASTMLYKGINILYVSKRLGHSSLNVTMSVYSHI 355 >ref|NP_543063.1|putative lambda repressor Length = 218 Score = 42.7 bits (99), Expect = 0.009 Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 10/127 (7%) Frame = +2 Query: 127778 SHDVPLVGRIAAGVPITA----EQHVDDVMRLPERLTGSGTLFMLEVHGDSM---VDAAI 127936 +H P++ + AG+ TA + D R + G F LEVHGDSM V Sbjct: 86 AHSYPVINWVQAGLFATAGDDYNMYDQDNWRHSVKYAGERG-FWLEVHGDSMTSPVGITF 144 Query: 127937 CDGDYVVVREQNSAVNGDIVAALLD--DEATVKTFRKENGHVWLMPHNPAYSPID-GTHA 128107 +G ++V +G V A +EAT K + E G +L P NP Y I+ Sbjct: 145 PEGMSILVNPDKEVFSGCYVIARKKSTNEATFKKYISEMGKAFLKPLNPQYPIIEMDNDC 204 Query: 128108 TIMGKVV 128128 I+G VV Sbjct: 205 EIVGVVV 211 >ref|NP_049990.1|integrase Length = 359 Score = 42.4 bits (98), Expect = 0.012 Identities = 38/180 (21%), Positives = 74/180 (41%), Gaps = 8/180 (4%) Frame = -2 Query: 25516 AILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQG 25337 A L ++ TGIR AE + + + DI + V +TW + Sbjct: 191 AALYIIAKTGIRFAECLGLTVDDIKRDTGMLSVN-------------------KTWDYKN 231 Query: 25336 RPVLARTAT-DAVKSRAANALFLG-------ARGGRIDQRIARDIVHRAAREAGVPDISP 25181 T T +++ + F+ GRI ++ + V++ R+ ++ Sbjct: 232 NTGFMPTKTKSSIREIPLDDEFINFIDQLPPTDDGRILPSLSNNAVNKTLRKIVGREVRV 291 Query: 25180 HALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA*PLCG 25001 H+LRH+ A++++ DL V ++LGH +L T +++ K+R + + CG Sbjct: 292 HSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEVYAHQLQEQKSRNDEKIKQMWTECG 351 >ref|NP_046638.1|unknown Length = 358 Score = 42.4 bits (98), Expect = 0.012 Identities = 63/274 (22%), Positives = 105/274 (38%), Gaps = 15/274 (5%) Frame = -3 Query: 45438 YESDIAKYIDWLETRGIHE--PD--AITKQDVEDYIAALDQAGESARSKARRLASIHEFH 45271 YE DI ++ ++ + + PD ++K ++ +Y+ L + G S R++ S+ + Sbjct: 51 YEGDIKQFFSVIKGKDVKSLVPDDLVVSKSELSNYVKYLQEKGLVNNSINRKMTSLKMLY 110 Query: 45270 RFALGQHAVTADVSA--AVKAPKGASTLPDVLTVDEVTRLLDAAAVGGSTDPVVLRDKAL 45097 + + D+S V+ K + D T E R+ + P L K Sbjct: 111 TYLEHDYKDYIDLSVFNTVERLKTVTKNWDKTTQTEAERIAQDMYINERQKP--LMKKLF 168 Query: 45096 LEFMYATGCRVSEATGANLDDIDLDE----HIARLMGKGSKQRLVPLGSYACRAITAYLN 44929 ++F T RVS DI LDE +I ++ KGS+ T Sbjct: 169 VKFAIRTSFRVSAILRVRWKDIQLDESTGHYIVTVIDKGSQV-----------VSTGINQ 217 Query: 44928 AGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSF 44749 EL Q E +F + +S QS+ +K + +R GI P + HSF Sbjct: 218 VFYEELLQLKEEDDSETELVF-----QGLSEQSLRHSLKRSKKRLGI--PPERELVLHSF 270 Query: 44748 ATHLI-----QGGADVRTVQELLGHASVTTTQIY 44662 I G D+ +E H + TT+ Y Sbjct: 271 KGVGIDYVYENSGHDLLAAKEQGNHKNTLTTERY 304 >ref|NP_958623.1|77ORF007 Length = 401 Score = 42.4 bits (98), Expect = 0.012 Identities = 52/255 (20%), Positives = 103/255 (40%), Gaps = 32/255 (12%) Frame = -3 Query: 45318 SARSKARRLASIHEFHRFALGQHAVTAD-VSAAVKAPKGASTLPDV----------LTVD 45172 SA R+L + E ++A+ + + + +V PK + T+ D+ L ++ Sbjct: 134 SANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIEKEEAKMYNYLEME 193 Query: 45171 EVTRLLDAAAVGGSTDPVVLRDKALL----EFMYATGCRVSEATGANLDDIDLDEHIARL 45004 +V ++ D + + + R + L+ E TG R+ E + D+DL + Sbjct: 194 QVIQIRDFIL---NDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKDVDLKNKTIAI 250 Query: 45003 MGK----------GSKQRLVPLGSYACRAITAYLNAGRGELE------QRSSAKIPERRA 44872 G G K GS AI + + ++ Q+ +R Sbjct: 251 NGTIHRIKCNAGFGHKDTTKTAGSRRKIAINSRIANVLKKIMLENKKMQQWEPSYVDRGF 310 Query: 44871 LFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLG 44692 +F +G + + + + + E I K + HTLRH+ + L + ++ + + +G Sbjct: 311 IFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNISLKAIMKRVG 370 Query: 44691 HA-SVTTTQIYTHVS 44650 H TT ++YTHV+ Sbjct: 371 HTDEKTTIKVYTHVT 385 >ref|NP_695079.1|putative integrase Length = 359 Score = 42.0 bits (97), Expect = 0.016 Identities = 37/180 (20%), Positives = 74/180 (41%), Gaps = 8/180 (4%) Frame = -2 Query: 25516 AILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQG 25337 A L ++ TGIR AE + + + DI + V +TW + Sbjct: 191 AALYIISKTGIRFAECLGLTVDDIKRDTGMLSVN-------------------KTWDYKN 231 Query: 25336 RPVLARTAT-DAVKSRAANALFLG-------ARGGRIDQRIARDIVHRAAREAGVPDISP 25181 T T +++ + F+ GR+ ++ + V++ R+ ++ Sbjct: 232 NTGFMPTKTKSSIREIPLDDEFINFIDQLPPTDDGRLLPSLSNNAVNKTLRKIVGREVRV 291 Query: 25180 HALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA*PLCG 25001 H+LRH+ A++++ DL V ++LGH +L T +++ K+R + + CG Sbjct: 292 HSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEVYAHQLQEQKSRNDEKIKQMWTKCG 351 >ref|NP_720299.1|C2 Length = 234 Score = 42.0 bits (97), Expect = 0.016 Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 10/166 (6%) Frame = +2 Query: 127661 EVVAGSAPNAEKPSQASEEATSTSNVAEIYQFPAEAIAESHDVPLVGRIAAGVPITAEQ- 127837 E+V S + P + +S EI +FP L+ ++AG A + Sbjct: 74 ELVLSSDGMVDYPDSSLSNVSSPRPHTEIRRFP-----------LISWVSAGNWCEAVEP 122 Query: 127838 -HVDDVMRLPERLT-GSGTLFMLEVHGDSMVDA---AICDGDYVVVREQNSAVNGDIVAA 128002 + ++ PE S F L V GDSM +I +G ++V NG +V A Sbjct: 123 YQLREIEVWPETTAHASERSFWLTVRGDSMTSPTGLSIPEGMQILVDPAIEPTNGRLVVA 182 Query: 128003 LLD--DEATVKTFRKENGHVWLMPHNPAYS--PIDGTHATIMGKVV 128128 L+ +EAT K + + G +L P NP+Y PI+G + I+G V+ Sbjct: 183 KLESENEATFKKYIVDAGQKYLKPLNPSYHMIPING-NCRIIGVVI 227 >ref|NP_624303.1|integrase fragment Length = 112 Score = 42.0 bits (97), Expect = 0.016 Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%) Frame = -2 Query: 25252 IDQRIARDIVHRAAREAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR- 25076 I+ + +D+ H A+ +++ HALRHS A+++L G ++ V E LGHS++ T+ Sbjct: 35 INHVLTKDLKHIEAK-----NVTFHALRHSHASYLLSKGVSIQYVSERLGHSNVGITENV 89 Query: 25075 YTHV 25064 Y+H+ Sbjct: 90 YSHL 93 Score = 41.2 bits (95), Expect = 0.027 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 11/88 (12%) Frame = -3 Query: 44883 ERRALFLNKRGKRISRQSVWEIVKATGERAG--ITKPLHP--------HTLRHSFATHLI 44734 ++R L + KR KR+S +V+ T E +TK L H LRHS A++L+ Sbjct: 10 DKRLLDVLKRYKRVSGL----LVQVTREAINHVLTKDLKHIEAKNVTFHALRHSHASYLL 65 Query: 44733 QGGADVRTVQELLGHASVTTTQ-IYTHV 44653 G ++ V E LGH++V T+ +Y+H+ Sbjct: 66 SKGVSIQYVSERLGHSNVGITENVYSHL 93 >ref|NP_835517.1|integrase Length = 345 Score = 41.6 bits (96), Expect = 0.021 Identities = 60/320 (18%), Positives = 126/320 (39%), Gaps = 2/320 (0%) Frame = -2 Query: 26005 NTLKAYRADLTACLHLFELR-GVTDLNEITLDDLRSWMAVESRDHARSSMARKTVAVRGF 25829 NT + YR A H+ + + G +L++I + ++ S++HA+ ++ + A+R Sbjct: 75 NTYRHYR---NALQHIQKHKIGKMELSKINRQVYQKFINDHSKEHAKETIRKTNGAIRSA 131 Query: 25828 FAWAYEHGLTTTDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEHAVATNQYKDDXXXXX 25649 A GL +PA + + + P T+S+ E+ + V E+ + + Sbjct: 132 LDDALYDGLIFKNPAYKV---NYKAGKP---TKSEQEKFISVTEYEILKDH--------- 176 Query: 25648 XXXXXXXXXXXADKSADTVNRSEAPARADKRDNARVTAESQRNAAILELLYATGIRVAEL 25469 V + R++ L ++ TG RV+ Sbjct: 177 -----------------------------------VRKKRTRSSLALFIMICTGCRVSGA 201 Query: 25468 VSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGRPVLARTATDAVKSRA 25289 ++ I I+ TI + + + R + + ++ +T A+ + Sbjct: 202 RNIKIEHINQVKNTIFIDERKTDT--------SPRYISIAKSDMKHIMDVISTFAI---S 250 Query: 25288 ANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAATHMLDGGADLREVQEM 25109 + G I+ + + + A R +P I+ HALRH+ +++L G + + + Sbjct: 251 YDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKR 310 Query: 25108 LGHSSLK-TTQRYTHVSIEQ 25052 LGH ++ TT Y+H+ E+ Sbjct: 311 LGHKNIAITTSVYSHLLEEK 330 Score = 38.1 bits (87), Expect = 0.23 Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 5/165 (3%) Frame = -3 Query: 45111 RDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYL 44932 R L M TGCRVS A + EHI ++ + + + Y+ Sbjct: 183 RSSLALFIMICTGCRVSGARNIKI------EHINQV------KNTIFIDERKTDTSPRYI 230 Query: 44931 NAGRGELEQR----SSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHT 44764 + + +++ S+ I +F + G I+ Q++ +K+ R + H Sbjct: 231 SIAKSDMKHIMDVISTFAISYDGYIF-KEAGSIINLQAINNALKSAC-RVNNIPIITSHA 288 Query: 44763 LRHSFATHLIQGGADVRTVQELLGHASVT-TTQIYTHVSPETLIE 44632 LRH+ ++L+ G + + + LGH ++ TT +Y+H+ E E Sbjct: 289 LRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333 >ref|NP_061591.2|integrase Length = 348 Score = 41.6 bits (96), Expect = 0.021 Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%) Frame = -3 Query: 44769 HTLRHSFATHLIQGGADVRTVQELLGHASVT-TTQIYTHV 44653 H LRHS+A++LI G D+ + EL+ H+++T T Q Y+H+ Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHL 335 Score = 38.1 bits (87), Expect = 0.23 Identities = 36/172 (20%), Positives = 77/172 (44%), Gaps = 11/172 (6%) Frame = -2 Query: 25546 RVTAESQRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGN----------KQ 25397 ++T ++ R + +LL+ +G+R+ E +++ D + I V K N K+ Sbjct: 176 QITNDTSRQ--LTKLLFYSGLRIGEALALQWKDYNKIKGEIDVNKKINLSNRKIEYNLKK 233 Query: 25396 RVVPFGLPAQRALETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHR 25217 + + +P + LE + ++ K N G R I + Sbjct: 234 KALKGIIPVPNLIREMLEN----MYNESSKRYKYFDENYFIFGGL------EPIRYITYS 283 Query: 25216 AAREAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSL-KTTQRYTHV 25064 ++ ++ H LRHS A+++++ G D+ + E++ HS++ +T Q Y+H+ Sbjct: 284 YHFKSVFSNLKIHHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHL 335 >ref|NP_803254.1|integrase Length = 348 Score = 41.6 bits (96), Expect = 0.021 Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%) Frame = -3 Query: 44769 HTLRHSFATHLIQGGADVRTVQELLGHASVT-TTQIYTHV 44653 H LRHS+A++LI G D+ + EL+ H+++T T Q Y+H+ Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHL 335 Score = 40.8 bits (94), Expect = 0.035 Identities = 35/168 (20%), Positives = 77/168 (45%), Gaps = 7/168 (4%) Frame = -2 Query: 25546 RVTAESQRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGN-KQRVVPFGLPA 25370 ++T ++ R + LL+ +G+R+ E +++ D D I V K N R + + L Sbjct: 176 QITNDTSRQ--LTRLLFYSGLRIGEALALQWKDYDKIKGEIDVNKKINLSNRKIEYNLKK 233 Query: 25369 QRA-----LETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAARE 25205 + + + + + + ++ K N G R + + + Sbjct: 234 ESSKGIIPVPNLIREMLKNMYNESSKRYKYFDENYFIFGGL------EPIRYVTYSYHFK 287 Query: 25204 AGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSL-KTTQRYTHV 25064 + P++ H LRHS A+++++ G D+ + E++ HS++ +T Q Y+H+ Sbjct: 288 SVFPNLKIHHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHL 335 >ref|NP_705643.1|gp17 Length = 695 Score = 41.6 bits (96), Expect = 0.021 Identities = 36/119 (30%), Positives = 55/119 (46%) Frame = +3 Query: 67095 GCVLNEHGQLLLGRRSDTGEWAMVYGINEPGEQPADTVVREIKEETGIDALVTDLVAVTS 67274 G V G++LL +R G+W + G E E P + RE +EETG D +LV + Sbjct: 579 GAVYVVDGKVLLMKRP-AGDWGLPAGKVEGNETPEEAARRETREETGYDH-DGELVPLGK 636 Query: 67275 SDKVLTYANGDNTMYMDHSFLCALKPGGNAEPFVGDEESLSVGWFDLDDLPTPLAASTS 67451 D H+F+ L+P + + DE + + WF+ D+LP PL T+ Sbjct: 637 FDGFF------------HAFVAHLEP---FDVELNDEHT-AFDWFNPDELPHPLHRDTA 679 >ref|NP_958122.1|gp17 Length = 694 Score = 41.6 bits (96), Expect = 0.021 Identities = 36/119 (30%), Positives = 55/119 (46%) Frame = +3 Query: 67095 GCVLNEHGQLLLGRRSDTGEWAMVYGINEPGEQPADTVVREIKEETGIDALVTDLVAVTS 67274 G V G++LL +R G+W + G E E P + RE +EETG D +LV + Sbjct: 578 GAVYVVDGKVLLMKRP-AGDWGLPAGKVEGNETPEEAARRETREETGYDH-DGELVPLGK 635 Query: 67275 SDKVLTYANGDNTMYMDHSFLCALKPGGNAEPFVGDEESLSVGWFDLDDLPTPLAASTS 67451 D H+F+ L+P + + DE + + WF+ D+LP PL T+ Sbjct: 636 FDGFF------------HAFVAHLEP---FDVELNDEHT-AFDWFNPDELPHPLHRDTA 678 >ref|NP_803356.1|integrase Length = 345 Score = 41.2 bits (95), Expect = 0.027 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = -2 Query: 25261 GGRIDQRIARDIVHRAAREAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLK-T 25085 G I+ + + + A R +P I+ HALRH+ +++L G + + + LGH ++ T Sbjct: 260 GSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAIT 319 Query: 25084 TQRYTHVSIEQ 25052 T Y+H+ E+ Sbjct: 320 TSVYSHLLEEK 330 Score = 38.1 bits (87), Expect = 0.23 Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 5/165 (3%) Frame = -3 Query: 45111 RDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYL 44932 R L M TGCRVS A + EHI ++ + + + Y+ Sbjct: 183 RSSLALFIMICTGCRVSGARNIKI------EHINQV------KNTIFIDERKTDTSPRYI 230 Query: 44931 NAGRGELEQR----SSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHT 44764 + + +++ S+ I +F + G I+ Q++ +K+ R + H Sbjct: 231 SIAKSDMKHIMDVISTFAISYDGYIF-KEAGSIINLQAINNALKSAC-RVNNIPIITSHA 288 Query: 44763 LRHSFATHLIQGGADVRTVQELLGHASVT-TTQIYTHVSPETLIE 44632 LRH+ ++L+ G + + + LGH ++ TT +Y+H+ E E Sbjct: 289 LRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333 >ref|NP_944326.1|gp18 Length = 698 Score = 40.8 bits (94), Expect = 0.035 Identities = 35/119 (29%), Positives = 53/119 (44%) Frame = +3 Query: 67095 GCVLNEHGQLLLGRRSDTGEWAMVYGINEPGEQPADTVVREIKEETGIDALVTDLVAVTS 67274 G V ++LL +R G+W + G E GE P + RE EETG + Sbjct: 582 GIVFRAGDKVLLMKRP-AGDWGLPAGKVEDGETPEEAARRETLEETG-----------HA 629 Query: 67275 SDKVLTYANGDNTMYMDHSFLCALKPGGNAEPFVGDEESLSVGWFDLDDLPTPLAASTS 67451 D VL + + H+F+ + P + + DE + + WFD D+LP PL T+ Sbjct: 630 GDYVLAPLGKYDEFF--HAFVADVNP---FDVELNDEHT-AFDWFDPDELPHPLHRDTA 682 >ref|NP_510895.1|similar to phage phi 11 integrase Length = 349 Score = 40.0 bits (92), Expect = 0.060 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Frame = -3 Query: 44769 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQ-IYTHV 44653 H LRHS+A++L G D+ +Q L+ HA +T T Y+H+ Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHL 335 >ref|NP_059606.1|C2 Length = 216 Score = 39.7 bits (91), Expect = 0.079 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 6/85 (7%) Frame = +2 Query: 127892 FMLEVHGDSMVDAA---ICDGDYVVVREQNSAVNGDIVAALLD--DEATVKTFRKENGHV 128056 F L+V GDSM A I +G ++V + NG +V A L+ +EAT K + G Sbjct: 124 FWLDVQGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEATFKKLVMDAGRK 183 Query: 128057 WLMPHNPAYSPID-GTHATIMGKVV 128128 +L P NP Y I+ + I+G VV Sbjct: 184 FLKPLNPQYPMIEINGNCKIIGVVV 208 >ref|NP_858969.1|conserved phage protein; central region similar to Gifsy-2 Length = 1574 Score = 39.3 bits (90), Expect = 0.10 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 1/138 (0%) Frame = -1 Query: 59330 GETFTHGVAAVGGSSISQSDLSLAARRDKALAQVKQLTAQDGGMAEQVAEAKTKRDEAAR 59151 G+T H A S I++SDL+LA R D + + Q G +Q+ T +D A+ Sbjct: 1339 GDTSVHVGARTVYSVIAESDLALARRVDTVSSDLGQF---KGSATQQLQTLSTAQDAQAQ 1395 Query: 59150 LVDQESAKRTEARLKAQQAEKSLKSATDRVASFTRQLEQLDRKITETQENCNEHQLKL-D 58974 L Q S A K++T V T ++ + + IT +N + Q + + Sbjct: 1396 LYQQVS------------ASLDTKASTSSVNLLTTRVTEAEGNITANSQNIAQAQAAIAN 1443 Query: 58973 DLNRALASAQQSTAEHAD 58920 + + SA Q+T D Sbjct: 1444 KADASAVSALQTTVNTID 1461 >ref|NP_862871.1|gp32 Length = 188 Score = 38.9 bits (89), Expect = 0.13 Identities = 37/173 (21%), Positives = 75/173 (43%), Gaps = 10/173 (5%) Frame = -2 Query: 25537 AESQRNAAILELLYATGIRVAELVSMDIADIDFSNRTI--KVTGKGNKQRVVPFGLPAQR 25364 ++S+RN ++ +G+R+++++ + + + + K TGK + + P ++ Sbjct: 22 SKSERNYVLIMCGLYSGMRISDIIPLQVKQVTGDRIEVIEKKTGKVKRFAINP---ELRK 78 Query: 25363 ALETWLE----QGR----PVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAR 25208 AL +++ QG P + TD G R I + A I+ +AA Sbjct: 79 ALNHYIKANDLQGYDYLFPSKKKVRTD------------GVRIAHIGRVAAYQILKQAAE 126 Query: 25207 EAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQL 25049 G+ +I H++R S H ++ + E+ HSS T Y + ++L Sbjct: 127 HVGLKNIGTHSMRKSFGYHHYRRNQNVAILMELFNHSSPDITLDYIGIKQDEL 179 >ref|NP_695147.1|integrase Length = 391 Score = 38.9 bits (89), Expect = 0.13 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Frame = -3 Query: 44862 NKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHAS 44683 N K + V V A I K H LRH+ A+ L+ G D+ V + LGH Sbjct: 297 NAINKMLRSLCVQNAVVARNSSGVIQKWYTCHALRHTHASLLLYEGRDISYVSKRLGHKD 356 Query: 44682 VTTT-QIYTHVSPE 44644 + TT YTHV E Sbjct: 357 IMTTYNTYTHVIQE 370 Score = 38.9 bits (89), Expect = 0.13 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Frame = -2 Query: 25180 HALRHSAATHMLDGGADLREVQEMLGHSSLKTT-QRYTHVSIEQLKNRYGQA 25028 HALRH+ A+ +L G D+ V + LGH + TT YTHV I+++ R +A Sbjct: 328 HALRHTHASLLLYEGRDISYVSKRLGHKDIMTTYNTYTHV-IQEMSAREDEA 378 >ref|NP_665954.1|unknown Length = 428 Score = 38.5 bits (88), Expect = 0.18 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 4/102 (3%) Frame = -1 Query: 14183 SMPEVAHDSTHPTDVTVGFVGSTDTAADKSAINALSDDKLNVY-YASLETSASSANATDG 14007 S+ ++A DS +DV G + A K A+ L+ Y YA ++ ASS A D Sbjct: 114 SLSDLALDSLWESDVAWGMIRDLSMAVGKFAVGRAG---LSGYDYADIDDVASSQTAMDA 170 Query: 14006 VSGETESSDAGTTSENGADS-TDAHTGVD--KNAATAQQGVA 13890 VS + DA +TSE D+ + + T +D + TA V+ Sbjct: 171 VSTSETAMDAVSTSETAMDAVSTSETAMDAVSTSETAMDAVS 212 >ref|YP_024843.1|Pas57 Length = 305 Score = 38.5 bits (88), Expect = 0.18 Identities = 19/52 (36%), Positives = 33/52 (63%) Frame = -1 Query: 45866 SCCTPLTTTSVTARLARATSASCGSSASMLPSALRASPTTASSRACVSPASS 45711 +C P T+TS +A + + SAS +SAS SA ++ T+AS+ + SP+++ Sbjct: 187 TCAPPSTSTSASASASTSASASASTSASASTSASASASTSASASSSASPSTT 238 >ref|YP_024421.1|Hypothetical protein Length = 741 Score = 37.4 bits (85), Expect = 0.39 Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 10/119 (8%) Frame = +1 Query: 135919 RSGTCVHQGGHRHQGCADSSRSVGAGTGRASFPVSQGHVLGGAATAGRQ---------AP 136071 ++ T V GG G ++R++ AG G S VS ++G + T GR A Sbjct: 546 QTATIVVGGG----GGGAANRAIAAGNGGNS-SVSGAGIVGLSWTGGRAGANGVQGYYAS 600 Query: 136072 SWTPACARPHQGAGCVQGSEGAATQVRRAGGG-VGPSNGQEAGRSGWRTGQAGQSGEPV 136245 + GAG S AA+ V GGG GP NG GWR+G G S V Sbjct: 601 GGNGGNNSSNVGAGAGASSGNAASGVSGGGGGGTGPGNG------GWRSGNGGGSNAGV 653 >ref|NP_835522.1|similar to repressor Length = 237 Score = 37.4 bits (85), Expect = 0.39 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 5/147 (3%) Frame = +2 Query: 127703 QASEEATSTSNVAEIYQFPAEAIAESHDVPLVGRIAAGVPITAEQHVDDVMRLPERLTGS 127882 Q E+ + NV +I + E V + G ++AGV + + D E + G Sbjct: 99 QLEEQNSKGDNVVDINSYKQEKTP----VNVNGCVSAGVG----ERLHDETLFTEMVKGP 150 Query: 127883 GTL--FMLEVHGDSMVDAAICDGDYVVVREQNSAVNGDIVAALLDDEATVKTFRKENGHV 128056 L+V+GDSM + DG+ + V + ++ NG I ++++EA VK E+ + Sbjct: 151 IPTHDLALKVNGDSM-EPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRL 209 Query: 128057 WLMPHNPAYSPID---GTHATIMGKVV 128128 L+ N Y + ++GKV+ Sbjct: 210 TLVSLNKDYDDLHFYRNESVRLIGKVI 236 >ref|NP_803311.1|cI-like repressor Length = 237 Score = 37.4 bits (85), Expect = 0.39 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 5/147 (3%) Frame = +2 Query: 127703 QASEEATSTSNVAEIYQFPAEAIAESHDVPLVGRIAAGVPITAEQHVDDVMRLPERLTGS 127882 Q E+ + NV +I + E V + G ++AGV + + D E + G Sbjct: 99 QLEEQNSKGDNVVDINSYKQEKTP----VNVNGCVSAGVG----ERLHDETLFTEMVKGP 150 Query: 127883 GTL--FMLEVHGDSMVDAAICDGDYVVVREQNSAVNGDIVAALLDDEATVKTFRKENGHV 128056 L+V+GDSM + DG+ + V + ++ NG I ++++EA VK E+ + Sbjct: 151 IPTHDLALKVNGDSM-EPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRL 209 Query: 128057 WLMPHNPAYSPID---GTHATIMGKVV 128128 L+ N Y + ++GKV+ Sbjct: 210 TLVSLNKDYDDLHFYRNESVRLIGKVI 236 >ref|NP_851940.1|putative integrase Length = 428 Score = 37.4 bits (85), Expect = 0.39 Identities = 48/198 (24%), Positives = 74/198 (37%), Gaps = 41/198 (20%) Frame = -2 Query: 25492 TGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGRPV-LART 25316 TGIR ELVS+ DID RTI + + N ++ F P +T GR + L + Sbjct: 230 TGIRHGELVSLAWEDIDLKARTITI--RRNYTKLGEFTPP-----KTDAGTGRTIHLVQP 282 Query: 25315 ATDAVKSRAANALFLGARGGRIDQR-IARDIVHRAA------------------------ 25211 A DA+KS+A + + QR R VH+ Sbjct: 283 AIDALKSQAEMTMLGKQHSVEVKQREYGRTAVHKCTFVFSPQVIKQQQLSGPHYKVDSIR 342 Query: 25210 -------REAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTT--------QR 25076 + AG+ + RH+ A L GA+ + +GH++ + + Sbjct: 343 ESWTSILKRAGLRHRKSYQSRHTYACWSLAAGANPSFIASQMGHTNAQMVFNVYGAWMKD 402 Query: 25075 YTHVSIEQLKNRYGQAFP 25022 H IE L R ++ P Sbjct: 403 NNHEQIELLNKRLSESVP 420 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 725,836,321 Number of Sequences: 14420 Number of extensions: 15464310 Number of successful extensions: 55010 Number of sequences better than 0.5: 94 Number of HSP's better than 0.5 without gapping: 11257 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 54898 length of database: 3,019,461 effective HSP length: 124 effective length of database: 1,231,381 effective search space used: 61629387669 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Scaffold4 (135,815 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_943919.1|NrdD anaerobic NTP reductase large subunit 585 e-166 ref|NP_899260.1|anaerobic NTP reductase large subunit 564 e-160 ref|NP_861775.1|NrdD anaerobic NTP reductase, large subunit 523 e-147 ref|NP_049690.1|NrdD anaerobic NTP reductase, large subunit 518 e-146 ref|NP_891627.1|anaerobic NTP reductase large subunit 501 e-141 ref|NP_932420.1|anaerobic NTP reductase large subunit 499 e-140 ref|YP_006927.1|putative anaerobic ribonucleoside-triphosphate r... 435 e-121 ref|NP_116524.1|integrase 200 2e-50 ref|NP_076573.1|integrase 200 3e-50 ref|NP_108680.1|integrase 197 2e-49 ref|NP_996675.1|integrase 197 2e-49 ref|NP_695029.1|Integrase 195 1e-48 ref|NP_076696.1|integrase 194 2e-48 ref|NP_944999.1|putative anaerobic nucleoside diphosphate reductase 191 1e-47 ref|YP_164382.1|integrase 184 2e-45 ref|NP_049990.1|integrase 176 4e-43 ref|NP_695079.1|putative integrase 173 3e-42 ref|NP_695147.1|integrase 161 1e-38 ref|NP_680502.1|integrase 153 4e-36 ref|NP_835691.1|similar to DNA helicase 132 1e-29 ref|NP_511007.1|integrase 128 2e-28 ref|NP_803356.1|integrase 116 6e-25 ref|NP_835517.1|integrase 112 7e-24 ref|NP_818603.1|gp65 106 6e-22 ref|YP_025047.1|putative integrase 104 2e-21 ref|NP_943918.1|NrdG anaerobic NTP reductase small subunit 102 1e-20 ref|NP_046572.1|ABC transporter 99 8e-20 ref|NP_795660.1|putative integrase 96 6e-19 ref|NP_891623.1|anaerobic NTP reductase small subunit 96 8e-19 ref|NP_438114.1|integrase-like protein 95 2e-18 ref|NP_795541.1|putative integrase 95 2e-18 ref|NP_663635.1|putative integrase 94 3e-18 ref|NP_076635.1|integrase 94 4e-18 ref|NP_945003.1|putative nrdG 93 5e-18 ref|NP_861774.1|NrdG anaerobic NTP reductase, small subunit 91 3e-17 ref|NP_612851.1|putative integrase 89 8e-17 ref|NP_049688.1|NrdG anaerobic NTP reductase, small subunit 88 2e-16 ref|NP_899263.1|anaerobic NTP reductase small subunit 87 5e-16 ref|NP_862840.1|gp1 84 3e-15 ref|NP_795678.1|putative helicase 83 6e-15 ref|NP_803332.1|helicase 83 6e-15 ref|NP_150133.1|integrase 83 7e-15 ref|NP_795429.1|putative integrase 82 1e-14 ref|NP_076780.1|integrase 79 8e-14 ref|NP_852561.1|DNA integration 79 1e-13 ref|NP_076752.1|integrase 75 2e-12 ref|NP_945240.1|integrase 75 2e-12 ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family 74 4e-12 ref|NP_958716.1|Bbp47 72 1e-11 ref|NP_996608.1|DEAD box helicase 72 1e-11 ref|NP_996656.1|DEAD box helicase 72 1e-11 ref|YP_024677.1|gp04 70 6e-11 ref|NP_803307.1|integrase 66 7e-10 ref|NP_075464.1|integrase 66 9e-10 ref|NP_058467.1|integrase 66 9e-10 ref|NP_958556.1|putative integrase 65 2e-09 ref|NP_958623.1|77ORF007 65 2e-09 ref|NP_624303.1|integrase fragment 63 8e-09 ref|NP_958506.1|putative integrase 61 2e-08 ref|YP_024948.1|gp28 61 3e-08 ref|NP_076801.1|integrase 60 4e-08 ref|NP_795489.1|putative integrase 60 5e-08 ref|NP_051002.1|hypothetical protein 59 1e-07 ref|NP_510895.1|similar to phage phi 11 integrase 57 4e-07 ref|NP_777346.1|hypothetical protein 57 6e-07 ref|NP_050109.1|integrase 53 6e-06 ref|YP_024988.1|superfamily II DNA 52 1e-05 ref|YP_024431.1|superfamily II DNA 52 1e-05 ref|NP_817947.1|gp96 51 2e-05 ref|NP_061531.1|integrase 50 7e-05 ref|NP_803254.1|integrase 49 2e-04 ref|NP_818230.1|gp179 47 3e-04 ref|NP_818386.1|gp85 47 5e-04 ref|NP_795605.1|putative phage integrase 46 8e-04 ref|NP_817718.1|gp41 45 0.001 ref|NP_817551.1|gp102 44 0.004 ref|NP_818251.1|gp200 44 0.005 ref|NP_059584.1|Int 44 0.005 ref|NP_720278.1|Int 43 0.008 ref|NP_862865.1|gp26 42 0.011 ref|YP_006360.1|Int 42 0.014 ref|NP_958267.1|hypothetical protein 42 0.019 ref|NP_852723.1|putative integrase 42 0.019 ref|NP_445687.1|putative helicase 41 0.025 ref|YP_164279.1|single-stranded DNA-binding protein 40 0.055 ref|NP_569794.1|hypothetical protein 40 0.055 ref|NP_795616.1|putative helicase 40 0.072 ref|NP_795446.1|putative DEAD box family helicase 40 0.072 ref|NP_813723.1|gp7 40 0.072 ref|NP_599058.1|integrase 39 0.094 ref|NP_795373.1|putative integrase 39 0.12 ref|NP_599085.1|unknown 39 0.16 ref|NP_047953.1|gp7 39 0.16 ref|NP_818403.1|gp105 38 0.21 ref|NP_536807.1|integrase 38 0.21 ref|NP_490644.1|integrase 38 0.21 ref|NP_075481.1|ssDNA binding protein 38 0.27 ref|NP_795389.1|hypothetical protein 37 0.47 ref|NP_899402.1|Dda 37 0.47 >ref|NP_943919.1|NrdD anaerobic NTP reductase large subunit Length = 704 Score = 585 bits (1509), Expect = e-166 Identities = 336/762 (44%), Positives = 452/762 (59%), Gaps = 7/762 (0%) Frame = -2 Query: 81373 VEKRDGRVVDFDPINIISAVKSAFGDLNKEVGPEEDAMIRGFANQVEGEIKERYAGP--A 81200 V+KRDGRVVDFD I +A+ ++ +N + P F + + + G Sbjct: 3 VQKRDGRVVDFDQSFIETAITNSLQSINI-IDPT-------FPHHATEAVVRKLIGRNLV 54 Query: 81199 KIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRAKATDVNEAVARFINH-DPTLIHE 81023 IE+IQ++VE L+ + VAR+Y YR D+D+ R +D+ + + + D +++E Sbjct: 55 TIEEIQHVVEDTLMKSRYPAVARSYIEYRYDRDVARDLNSDMTKRIMGLMKQEDEGIMNE 114 Query: 81022 NANKDSNVYSTQRDLLAGAVSKAAAFNMLPPAVSNAHMKGDIHFHDADYSPFTAQSNCSL 80843 NANKD+ V TQRDL+AG VSK A + LP V AH KG +HFHD DYSPF NC L Sbjct: 115 NANKDAKVIPTQRDLVAGIVSKHFAKHYLPVEVMQAHEKGWLHFHDLDYSPFFPMFNCML 174 Query: 80842 PNFWDMLANGFTLGNAPMASPKSXXXXXXXXXXIMKDVASSQYGGQTANRADEHLAQYAK 80663 + ML GF +GNA + +PKS I+ VAS YGG T NR DE LA Y K Sbjct: 175 IDVKGMLDRGFRMGNAQIETPKSISTAAAVVAQIIAQVASHIYGGNTINRIDEVLAPYVK 234 Query: 80662 KDYEKFLEEARE-TIPDGMPVEFARRQVESAKKNEPAKLHFGSREPLPMDTPFHTDVDEL 80486 +EK L+EAR IPD AK+ AK H Sbjct: 235 MTHEKHLDEARYWKIPD-------------AKEYAIAKTH-------------------- 261 Query: 80485 EQEREILAKIRTRKAIYDAMQTMEYQINSNRVSNGQTPFVTVGFGLGTDWFSREVQRAIL 80306 KA+YDAMQ +EY++N+ +NGQTPF T GFGLG W + +Q AIL Sbjct: 262 -------------KAVYDAMQGLEYEVNTLHSANGQTPFCTFGFGLGESWEAELIQEAIL 308 Query: 80305 LNRIRGLGKEHHTAIFPKLVFTVKHGVNADPGDPNYDLKQLALESATKRMYPDVVFYENI 80126 R+ GLGKE T +FPKLVF +K G N P DP Y +KQLALE A+KRMYPD++ Y+ + Sbjct: 309 KVRLAGLGKEGITPVFPKLVFALKDGHNLKPTDPLYRIKQLALECASKRMYPDILSYDKV 368 Query: 80125 VKITGSFKAPMGCRSFLQGWINPETGKDEEDGRMNLGVVTVNVPRIAIESHGDKARFWKL 79946 V+ TGSFK PMGCRSFL W E G + +GR NLGVVT+N+PRIA++++G+ RFW+L Sbjct: 369 VETTGSFKFPMGCRSFLHRW-EDENGNEVHEGRNNLGVVTLNLPRIALDANGNHMRFWEL 427 Query: 79945 FDERMEVAHQALQFRIMRCKEATPVNAPTLFRFGAFG-RLGANDNVDQLFKNERATVSLG 79769 +ERMEV QAL R+ R + AP L+ GA G RL +D++ + F+N RA+VS+G Sbjct: 428 LEERMEVVKQALMVRVDRLRGVKASVAPILYVEGACGVRLNPDDDIMKAFENGRASVSIG 487 Query: 79768 YIGLAETTAV-FYGKNWIRDHGWDPEGKE-FALSIVKRMNELCKQWSKAEGYHYSVYSTP 79595 YIGL E + + YG I +H + + K+ FALS++K M E+ W G +S+Y TP Sbjct: 488 YIGLHELSEIMMYG---IDEHIMENQTKQVFALSVLKHMKEITDSWKAETGLAFSLYGTP 544 Query: 79594 AESLTDRFNRMDREKFGRIEGVTDHDFYTNSFHYPVWLQPTPMEKLSYEKDFPYYASGGF 79415 +ESL RF ++D E + V D D+YTNSFH V P +K+ +EK F +SGGF Sbjct: 545 SESLCYRFAKIDSELY-PTHKVFDKDYYTNSFHLDVRHNTNPYDKIDFEKQFIPLSSGGF 603 Query: 79414 INYCEYPCLQDNPKALEAVWDYAYNIGIGYLGTNTPIDHCFVCGFQGDFEPTEEGFKCPE 79235 I+Y EYP +++N KALE VWDYAY + Y GTNTP+D CF CG+ G+F T +G++CP+ Sbjct: 604 ISYGEYPNMKNNLKALEDVWDYAY-LNTPYYGTNTPVDVCFECGYHGEFTATSKGYECPK 662 Query: 79234 CGNSNPDKCNVTKRTCGYLGSPVQRPMVHGRHEEIAHRVKHM 79109 CGN + K NV +R CGYLG+P R G+ +E+ RVKH+ Sbjct: 663 CGNHDDTKMNVIRRVCGYLGAPGSRAFNRGKQDEVQKRVKHL 704 >ref|NP_899260.1|anaerobic NTP reductase large subunit Length = 611 Score = 564 bits (1454), Expect = e-160 Identities = 303/643 (47%), Positives = 392/643 (60%), Gaps = 3/643 (0%) Frame = -2 Query: 81031 IHENANKDSNVYSTQRDLLAGAVSKAAAFN-MLPPAVSNAHMKGDIHFHDADYSPFTAQS 80855 I ENANKDS V T RDL+AG VSK A LP +++AH+ GDIHFHD DYSP Q Sbjct: 15 IKENANKDSKVIPTMRDLVAGTVSKQYALEEYLPKHIADAHIDGDIHFHDLDYSPLFPQF 74 Query: 80854 NCSLPNFWDMLANGFTLGNAPMASPKSXXXXXXXXXXIMKDVASSQYGGQTANRADEHLA 80675 NC L + M GF +GNA + P S I++ V+S YGG T NR DE LA Sbjct: 75 NCMLIDIKGMFEGGFKMGNAEIEEPNSIATAATIVTQIIQQVSSHIYGGNTINRIDEVLA 134 Query: 80674 QYAKKDYEKFLEEARETIPDGMPVEFARRQVESAKKNEPAKLHFGSREPLPMDTPFHTDV 80495 Y +K Y K+LE RE PD Sbjct: 135 PYVRKSYYKWLEIGREEHPDS--------------------------------------- 155 Query: 80494 DELEQEREILAKIRTRKAIYDAMQTMEYQINSNRVSNGQTPFVTVGFGLGTDWFSREVQR 80315 + + I A+ R K YDA QT EYQ+N+ + SNGQTPF T+ FGLGT W + +Q+ Sbjct: 156 ---DSKAAIFARKRVEKETYDAFQTFEYQVNTMQTSNGQTPFTTINFGLGTSWEEKLIQK 212 Query: 80314 AILLNRIRGLGKEHHTAIFPKLVFTVKHGVNADPGDPNYDLKQLALESATKRMYPDVVFY 80135 +IL NRI GLGK TAIFPKLVFT+K GVN GDP Y +K+LALE A+KRMYPD++ Y Sbjct: 213 SILQNRIAGLGKTKKTAIFPKLVFTLKDGVNLKEGDPCYGIKKLALECASKRMYPDILNY 272 Query: 80134 ENIVKITGSFKAPMGCRSFLQGWINPETGKDEEDGRMNLGVVTVNVPRIAIESHGDKARF 79955 E +V+ TG FK+PMGCRSFL W N E G+ DGR NLGVV++N+PRIAIE+ GD RF Sbjct: 273 EKLVETTGGFKSPMGCRSFLGEWKN-EDGETVFDGRNNLGVVSINIPRIAIEASGDTERF 331 Query: 79954 WKLFDERMEVAHQALQFRIMRCKEATPVNAPTLFRFGAFG-RLGANDNVDQLFKNERATV 79778 +++ ER +A++AL RI R + T AP L+ GA G RL D V ++FKN RA++ Sbjct: 332 FEILHERCTLAYEALMLRIKRFDDVTASVAPILYCEGAMGVRLKPTDKVSEVFKNGRASI 391 Query: 79777 SLGYIGLAETTAVFYGKNWIRDHGWDPEGKEF-ALSIVKRMNELCKQWSKAEGYHYSVYS 79601 SLGYIGL E + + H ++ + K+F A IV+ + W + GY +S+YS Sbjct: 392 SLGYIGLHEAVTLLSPDKDM--HTFESQHKQFLAEKIVETLRAYTDAWKELTGYGFSLYS 449 Query: 79600 TPAESLTDRFNRMDREKFGRIEGVTDHDFYTNSFHYPVWLQPTPMEKLSYEKDFPYYASG 79421 TP+ESL DRF R+D+EK+G I G+ D D+YTNSFH V+ + P EK+ +E +P +A+G Sbjct: 450 TPSESLCDRFCRLDQEKYGIITGINDKDYYTNSFHLDVFKKVNPFEKIDFEAAYPIHANG 509 Query: 79420 GFINYCEYPCLQDNPKALEAVWDYAYNIGIGYLGTNTPIDHCFVCGFQGDFEPTEEGFKC 79241 GFI Y E+P ++DN K LE VWDYAY + Y GTNTPID C CG+ G+ EG+ C Sbjct: 510 GFICYAEFPNMRDNIKGLERVWDYAYK-KVAYFGTNTPIDQC-TCGWSGEAHTDSEGYSC 567 Query: 79240 PECGNSNPDKCNVTKRTCGYLGSPVQRPMVHGRHEEIAHRVKH 79112 P CG +P+K +VT+R CGYLG+P R HG+ E+ +RVKH Sbjct: 568 PVCGERDPEKLHVTRRVCGYLGNPGARGWNHGKTVEMQNRVKH 610 >ref|NP_861775.1|NrdD anaerobic NTP reductase, large subunit Length = 605 Score = 523 bits (1347), Expect = e-147 Identities = 292/648 (45%), Positives = 387/648 (59%), Gaps = 7/648 (1%) Frame = -2 Query: 81034 LIHENANKDSNVYSTQRDLLAGAVSKAAAFNMLPPAVSNAHMKGDIHFHDADYSPFTAQS 80855 L++ENANKDS V+ TQRDL+AG VSK A NM+P + +AH G IH HD DYSP + Sbjct: 18 LLNENANKDSRVFPTQRDLMAGIVSKHIAKNMVPSFIMHAHESGIIHMHDIDYSPALPFT 77 Query: 80854 NCSLPNFWDMLANGFTLGNAPMASPKSXXXXXXXXXXIMKDVASSQYGGQTANRADEHLA 80675 NC L + ML NGF LGNA + +PKS I VAS QYGG T D+ L+ Sbjct: 78 NCCLVDLKGMLENGFKLGNAQIETPKSIGVATAIMAQITAQVASHQYGGTTFANVDKVLS 137 Query: 80674 QYAKKDYEKFLEEARETIPDGMPVEFARRQVESAKKNEPAKLHFGSREPLPMDTPFHTDV 80495 Y K+ Y K +E+A + Q+ A Sbjct: 138 PYVKRTYAKHIEDAEKW------------QIADALN------------------------ 161 Query: 80494 DELEQEREILAKIRTRKAIYDAMQTMEYQINSNRVSNGQTPFVTVGFGLGTDWFSREVQR 80315 A+ +T K +YDA Q EY++N+ SNGQTPFVT+ FG GTDW R +Q+ Sbjct: 162 ---------YAQSKTEKDVYDAFQAYEYEVNTLFSSNGQTPFVTITFGTGTDWTERMIQK 212 Query: 80314 AILLNRIRGLGKEHHTAIFPKLVFTVKHGVNADPGDPNYDLKQLALESATKRMYPDVVFY 80135 AIL NRI+GLG++ T IFPKLV V+ GVN DPNYD+KQLALE A+KRMYPD++ Sbjct: 213 AILKNRIKGLGRDGITPIFPKLVMFVEEGVNLYKDDPNYDIKQLALECASKRMYPDIISV 272 Query: 80134 ENIVKITGSF--KAPMGCRSFLQGWINPETGKDEEDGRMNLGVVTVNVPRIAIESH---- 79973 +N ITGS +PMGCRSFL W TG + DGR NLGVVT+N+PRIA++S+ Sbjct: 273 KNNKAITGSSVPVSPMGCRSFLSIW-KDSTGNEILDGRNNLGVVTLNLPRIALDSYIGTQ 331 Query: 79972 GDKARFWKLFDERMEVAHQALQFRIMRCKEATPVNAPTLFRFGAFG-RLGANDNVDQLFK 79796 ++ +F +LFDERM++ +AL RI K AP L++ GAFG RL +D++ +LFK Sbjct: 332 FNEQKFTELFDERMDLCFEALMCRISSLKGVKATVAPILYQEGAFGVRLKPDDDIIELFK 391 Query: 79795 NERATVSLGYIGLAETTAVFYGKNWIRDHGWDPEGKEFALSIVKRMNELCKQWSKAEGYH 79616 N R++VSLGYIG+ E + G++ I+ +MN L KQW++ G+ Sbjct: 392 NGRSSVSLGYIGIHELNILV--------------GRDIGQEILTKMNALLKQWTERTGFA 437 Query: 79615 YSVYSTPAESLTDRFNRMDREKFGRIEGVTDHDFYTNSFHYPVWLQPTPMEKLSYEKDFP 79436 +S+YSTPAE+L RF ++D EK+G ++ VTD +YTNSFH V TP EK+S E + Sbjct: 438 FSLYSTPAENLCYRFCKLDTEKYGSVKDVTDKGWYTNSFHVSVEENITPFEKISREAPYH 497 Query: 79435 YYASGGFINYCEYPCLQDNPKALEAVWDYAYNIGIGYLGTNTPIDHCFVCGFQGDFEPTE 79256 + A+GG I+Y E P +++N K LEAVWDYA + Y G N P+D CF CG + PTE Sbjct: 498 FIATGGHISYVELPDMKNNLKGLEAVWDYAAQ-HLDYFGVNMPVDKCFTCGSTHEMTPTE 556 Query: 79255 EGFKCPECGNSNPDKCNVTKRTCGYLGSPVQRPMVHGRHEEIAHRVKH 79112 GF C CG ++P K N +RTCGYLG+P +R G+++EI HRVKH Sbjct: 557 TGFVCSICGETDPKKMNTIRRTCGYLGNPNERGFNLGKNKEIMHRVKH 604 >ref|NP_049690.1|NrdD anaerobic NTP reductase, large subunit Length = 605 Score = 518 bits (1333), Expect = e-146 Identities = 290/648 (44%), Positives = 385/648 (59%), Gaps = 7/648 (1%) Frame = -2 Query: 81034 LIHENANKDSNVYSTQRDLLAGAVSKAAAFNMLPPAVSNAHMKGDIHFHDADYSPFTAQS 80855 L++ENANKDS V+ TQRDL+AG VSK A NM+P + AH G IH HD DYSP + Sbjct: 18 LLNENANKDSRVFPTQRDLMAGIVSKHIAKNMVPSFIMKAHESGIIHVHDIDYSPALPFT 77 Query: 80854 NCSLPNFWDMLANGFTLGNAPMASPKSXXXXXXXXXXIMKDVASSQYGGQTANRADEHLA 80675 NC L + ML NGF LGNA + +PKS I VAS QYGG T D+ L+ Sbjct: 78 NCCLVDLKGMLENGFKLGNAQIETPKSIGVATAIMAQITAQVASHQYGGTTFANVDKVLS 137 Query: 80674 QYAKKDYEKFLEEARETIPDGMPVEFARRQVESAKKNEPAKLHFGSREPLPMDTPFHTDV 80495 Y K+ Y K +E+A + Q+ A Sbjct: 138 PYVKRTYAKHIEDAEKW------------QIADALN------------------------ 161 Query: 80494 DELEQEREILAKIRTRKAIYDAMQTMEYQINSNRVSNGQTPFVTVGFGLGTDWFSREVQR 80315 A+ +T K +YDA Q EY++N+ SNGQTPFVT+ FG GTDW R +Q+ Sbjct: 162 ---------YAQSKTEKDVYDAFQAYEYEVNTLFSSNGQTPFVTITFGTGTDWTERMIQK 212 Query: 80314 AILLNRIRGLGKEHHTAIFPKLVFTVKHGVNADPGDPNYDLKQLALESATKRMYPDVVFY 80135 AIL NRI+GLG++ T IFPKLV V+ GVN DPNYD+KQLALE A+KRMYPD++ Sbjct: 213 AILKNRIKGLGRDGITPIFPKLVMFVEEGVNLYKDDPNYDIKQLALECASKRMYPDIISA 272 Query: 80134 ENIVKITGSF--KAPMGCRSFLQGWINPETGKDEEDGRMNLGVVTVNVPRIAIESH---- 79973 +N ITGS +PMGCRSFL W TG + DGR NLGVVT+N+PRIA++S+ Sbjct: 273 KNNKAITGSSVPVSPMGCRSFLSVW-KDSTGNEILDGRNNLGVVTLNLPRIALDSYIGTQ 331 Query: 79972 GDKARFWKLFDERMEVAHQALQFRIMRCKEATPVNAPTLFRFGAFG-RLGANDNVDQLFK 79796 ++ +F +LF+ERM++ +AL RI K AP L++ GAFG RL +D++ +LFK Sbjct: 332 FNEQKFVELFNERMDLCFEALMCRISSLKGVKATVAPILYQEGAFGVRLKPDDDIIELFK 391 Query: 79795 NERATVSLGYIGLAETTAVFYGKNWIRDHGWDPEGKEFALSIVKRMNELCKQWSKAEGYH 79616 N R++VSLGYIG+ E + G++ I+ +MN KQW++ G+ Sbjct: 392 NGRSSVSLGYIGIHELNILV--------------GRDIGREILTKMNAHLKQWTERTGFA 437 Query: 79615 YSVYSTPAESLTDRFNRMDREKFGRIEGVTDHDFYTNSFHYPVWLQPTPMEKLSYEKDFP 79436 +S+YSTPAE+L RF ++D EK+G ++ VTD +YTNSFH V TP EK+S E + Sbjct: 438 FSLYSTPAENLCYRFCKLDTEKYGSVKDVTDKGWYTNSFHVSVEENITPFEKISREAPYH 497 Query: 79435 YYASGGFINYCEYPCLQDNPKALEAVWDYAYNIGIGYLGTNTPIDHCFVCGFQGDFEPTE 79256 + A+GG I+Y E P +++N K LEAVWDYA + Y G N P+D CF CG + PTE Sbjct: 498 FIATGGHISYVELPDMKNNLKGLEAVWDYAAQ-HLDYFGVNMPVDKCFTCGSTHEMTPTE 556 Query: 79255 EGFKCPECGNSNPDKCNVTKRTCGYLGSPVQRPMVHGRHEEIAHRVKH 79112 GF C CG ++P K N +RTCGYLG+P +R G+++EI HRVKH Sbjct: 557 NGFVCSICGETDPKKMNTIRRTCGYLGNPNERGFNLGKNKEIMHRVKH 604 >ref|NP_891627.1|anaerobic NTP reductase large subunit Length = 620 Score = 501 bits (1290), Expect = e-141 Identities = 286/651 (43%), Positives = 381/651 (58%), Gaps = 12/651 (1%) Frame = -2 Query: 81025 ENANKDSNVYSTQRDLLAGAVSKAAAFNMLPPAVSNAHMKGDIHFHDADYSPFTAQSNCS 80846 ENANKD+ + T+RDL+AGAVSK A +LP + AH+ GDIH+HD DY+P +NC Sbjct: 22 ENANKDARTFPTRRDLIAGAVSKQIAKTVLPEHIYKAHVDGDIHYHDMDYAPAMPFTNCC 81 Query: 80845 LPNFWDMLANGFTLGNAPMASPKSXXXXXXXXXXIMKDVASSQYGGQTANRADEHLAQYA 80666 L N DML NGF LG+A + SPKS I+ VAS QYGG T D+ LA Y Sbjct: 82 LVNLKDMLENGFKLGSAQIESPKSIGVACAVTAQIIAQVASHQYGGTTIANIDQVLAPYV 141 Query: 80665 KKDYEKFLEEARETIPDGMPVEFARRQVESAKKNEPAKLHFGSREPLPMDTPFHTDVDEL 80486 KK Y K L +A +G + DT Sbjct: 142 KKTYHKHLADAET---------------------------YG----IKADT--------- 161 Query: 80485 EQEREILAKIRTRKAIYDAMQTMEYQINSNRVSNGQTPFVTVGFGLGTDWFSREVQRAIL 80306 + A+ +T K D Q +EY+IN+ +NGQTPFVT+ FG+GT W + +Q+AIL Sbjct: 162 -----LYAQEKTEKETLDGYQALEYEINTLFSTNGQTPFVTLTFGMGTSWEEKLIQKAIL 216 Query: 80305 LNRIRGLGKEHHTAIFPKLVFTVKHGVNADPGDPNYDLKQLALESATKRMYPDVVFYENI 80126 R +GLGK+ T +FPKLV ++ G+N P DPNYD+KQLALE ++KR+YPD + +N Sbjct: 217 KVRTKGLGKDGITPVFPKLVMFLEEGLNLKPEDPNYDIKQLALECSSKRLYPDYISAKNN 276 Query: 80125 VKITGSF--KAPMGCRSFLQGWINPETGKDEEDGRMNLGVVTVNVPRIAI-----ESHGD 79967 ITGS +PMGCRSFL W N E G++ DGR NLGVVT+N+PRIA+ Sbjct: 277 RSITGSSVPVSPMGCRSFLGVWHN-EKGEEVLDGRNNLGVVTLNLPRIALIAARRAGKAS 335 Query: 79966 KARFWKLFDE----RMEVAHQALQFRIMRCKEATPVNAPTLFRFGAFGRLGANDNVDQLF 79799 R +LF++ RM + AL R+ K A AP L+ GAF R+ ND + ++ Sbjct: 336 VMRRIELFEQELANRMPICFDALMSRVDALKGAKANVAPVLYTEGAFFRIHQNDEILEVL 395 Query: 79798 KNERATVSLGYIGLAETTAVFYGKNWIRDHGWDPE-GKEFALSIVKRMNELCKQWSKAEG 79622 K+ RA++SLGYIGL E +V +G H +D E + + I+K + ++W G Sbjct: 396 KDGRASISLGYIGLHEVLSVLFGV-----HPFDSEDAQRYGKHILKILRHYTEKWKDETG 450 Query: 79621 YHYSVYSTPAESLTDRFNRMDREKFGRIEGVTDHDFYTNSFHYPVWLQPTPMEKLSYEKD 79442 +S+Y TPAESL RFNR+DRE+FG ++G TD D+YTNSFH V + TP EK+ +EKD Sbjct: 451 LGFSLYGTPAESLCYRFNRLDREQFGIVKGATDKDWYTNSFHLDVDRKVTPFEKIDFEKD 510 Query: 79441 FPYYASGGFINYCEYPCLQDNPKALEAVWDYAYNIGIGYLGTNTPIDHCFVCGFQGDFEP 79262 + + ASGG I+Y E+P +++N K LE V DYA + + Y G NTP D C VCG + Sbjct: 511 YHWLASGGMISYVEFPDMKNNLKGLETVVDYAMD-KLHYFGVNTPSDVCHVCGSTKEMRA 569 Query: 79261 TEEGFKCPECGNSNPDKCNVTKRTCGYLGSPVQRPMVHGRHEEIAHRVKHM 79109 TE GF CP+CGN N +K NV +R GYLGS RP HG+H E+ +RVKHM Sbjct: 570 TESGFVCPDCGNDNLEKMNVIRRVSGYLGSVDLRPFNHGKHSEMVNRVKHM 620 >ref|NP_932420.1|anaerobic NTP reductase large subunit Length = 608 Score = 499 bits (1285), Expect = e-140 Identities = 277/642 (43%), Positives = 381/642 (59%), Gaps = 2/642 (0%) Frame = -2 Query: 81028 HENANKDSNVYSTQRDLLAGAVSKAAAFNMLPPAVSNAHMKGDIHFHDADYSPFTAQSNC 80849 +ENANK+++V T RD++A SK + ++LP + AH GDIH HD DY+ +NC Sbjct: 19 NENANKNADVIPTMRDMMASIASKDFSASILPIHLLQAHKSGDIHIHDMDYAFTIPMTNC 78 Query: 80848 SLPNFWDMLANGFTLGNAPMASPKSXXXXXXXXXXIMKDVASSQYGGQTANRADEHLAQY 80669 L N ML+ GF +G+A + PKS I V+S QYGG T D+ LA+Y Sbjct: 79 CLVNLGGMLSRGFKMGDAHIEQPKSFGVACAIMAQITAQVSSHQYGGTTLANIDQVLAKY 138 Query: 80668 AKKDYEKFLEEARETIPDGMPVEFARRQVESAKKNEPAKLHFGSREPLPMDTPFHTDVDE 80489 A K +EK L AR G+P N A ++ DE Sbjct: 139 AVKSWEKHLAMARRF---GLP-------------NNDAGIY----------------ADE 166 Query: 80488 LEQEREILAKIRTRKAIYDAMQTMEYQINSNRVSNGQTPFVTVGFGLGTDWFSREVQRAI 80309 L T+K IYD +Q EY++N+ +NGQTPFVT+ FG+GT+WF RE+Q+AI Sbjct: 167 L-----------TQKEIYDGIQAFEYEVNTMFTTNGQTPFVTITFGMGTNWFEREIQKAI 215 Query: 80308 LLNRIRGLGKEHHTAIFPKLVFTVKHGVNADPGDPNYDLKQLALESATKRMYPDVVFYEN 80129 L RI+GLGK T +FPKLV ++ G+N GDPNY++KQLA+E ATKRMYPD++ +N Sbjct: 216 LNVRIKGLGKNGITPVFPKLVMFMEDGLNLCKGDPNYEIKQLAMECATKRMYPDIISAKN 275 Query: 80128 IVKITGSF--KAPMGCRSFLQGWINPETGKDEEDGRMNLGVVTVNVPRIAIESHGDKARF 79955 ITGS +PMGCRSFL G E+G E +GR NLGVV++N+PRIAIES+G+ F Sbjct: 276 NRSITGSQVPVSPMGCRSFLAG---IESG--ELNGRNNLGVVSINIPRIAIESNGNVDTF 330 Query: 79954 WKLFDERMEVAHQALQFRIMRCKEATPVNAPTLFRFGAFGRLGANDNVDQLFKNERATVS 79775 ++L R ++++A RI K A AP L+ GAFG + RA++S Sbjct: 331 YELLKSRFAISYEASMERIKWLKGAKAKVAPILYTEGAFGLYLDPEEEFLPHLKPRASIS 390 Query: 79774 LGYIGLAETTAVFYGKNWIRDHGWDPEGKEFALSIVKRMNELCKQWSKAEGYHYSVYSTP 79595 +GYIGL E G++ P ++FA + M+ +C G+ +S+YSTP Sbjct: 391 IGYIGLYEAALHMTGESTAA----SPRARKFAEDVAALMHNMCVDAKNESGWSFSLYSTP 446 Query: 79594 AESLTDRFNRMDREKFGRIEGVTDHDFYTNSFHYPVWLQPTPMEKLSYEKDFPYYASGGF 79415 +ESL DR R+DREK+G I GVTD D+YTNSFH PV + P +K+ +EK+F + ASGG Sbjct: 447 SESLCDRLQRLDREKYGVIPGVTDKDWYTNSFHVPVEAELNPYDKIDFEKNFHWIASGGH 506 Query: 79414 INYCEYPCLQDNPKALEAVWDYAYNIGIGYLGTNTPIDHCFVCGFQGDFEPTEEGFKCPE 79235 I+Y E P ++ N +ALE +WDYA + Y GTNTP+D C+ CG+ G+F+ T +GF CP Sbjct: 507 ISYVELPNMRRNIEALEQIWDYAME-NLSYFGTNTPVDKCYDCGYDGEFKCTSKGFSCPA 565 Query: 79234 CGNSNPDKCNVTKRTCGYLGSPVQRPMVHGRHEEIAHRVKHM 79109 CGN + K +V +R CGYLG+P+ R G+ E+AHRVKH+ Sbjct: 566 CGNHDSSKMSVIRRVCGYLGAPLARGFNKGKQSEVAHRVKHV 607 >ref|YP_006927.1|putative anaerobic ribonucleoside-triphosphate reductase Length = 574 Score = 435 bits (1119), Expect = e-121 Identities = 258/645 (40%), Positives = 346/645 (53%), Gaps = 1/645 (0%) Frame = -2 Query: 81043 DPTLIHENANKDSNVYSTQRDLLAGAVSKAAAFNMLPPAVSNAHMKGDIHFHDADYSPFT 80864 D L+ NANK S + TQRD+LAG +SK +P + NAHM GDIHFHDADY+ Sbjct: 28 DEELLFNNANKPSERFPTQRDMLAGELSKYLILEEMPVQIRNAHMIGDIHFHDADYAAL- 86 Query: 80863 AQSNCSLPNFWDMLANGFTLGNAPMASPKSXXXXXXXXXXIMKDVASSQYGGQTANRADE 80684 +NC L DML NG +GNA +++P S I+ V+S QYGG + +R DE Sbjct: 87 GMTNCCLVALEDMLKNGMKVGNAEISTPNSITTAAAITAQIITQVSSHQYGGTSVDRLDE 146 Query: 80683 HLAQYAKKDYEKFLEEARETIPDGMPVEFARRQVESAKKNEPAKLHFGSREPLPMDTPFH 80504 LA Y +K Y+K FA+R + Sbjct: 147 VLAPYVRKSYDK-------------NHAFAKRWTKD------------------------ 169 Query: 80503 TDVDELEQEREILAKIRTRKAIYDAMQTMEYQINSNRVSNGQTPFVTVGFGLGTDWFSRE 80324 E + ++A T K +YDA Q +EY+IN+ SNGQ+PF+T GFGLGT W +R Sbjct: 170 ------EAKASVMATEMTEKEVYDACQGLEYEINTMFNSNGQSPFITFGFGLGTSWEARL 223 Query: 80323 VQRAILLNRIRGLGKEHHTAIFPKLVFTVKHGVNADPGDPNYDLKQLALESATKRMYPDV 80144 +Q+AIL R+ GLG TAIFPKLVF ++ GVN PGD NYD+K+LA++ +RMYPD Sbjct: 224 IQKAILKVRMDGLGINKRTAIFPKLVFVLRDGVNMKPGDVNYDIKKLAMKCTAERMYPDY 283 Query: 80143 VFYENIVKITGSFKAPMGCRSFLQGWINPETGKDEEDGRMNLGVVTVNVPRIAIESHGDK 79964 + Y+ +V++TG +K MGCRSFL + ET GR NLGVV+VN+PRIAIE+ G+ Sbjct: 284 ISYDKVVEVTGDYKVSMGCRSFLAATEDGETA-----GRNNLGVVSVNLPRIAIEAEGNI 338 Query: 79963 ARFWKLFDERMEVAHQALQFRIMRCKEATPVNAPTLFRFGAFG-RLGANDNVDQLFKNER 79787 F+ L + R++ A +AL++R+ R K AP L+ GAFG RLG ++ V F ++ Sbjct: 339 DLFFDLLELRVDTALKALEWRVDRLKYIQAKAAPILYMSGAFGLRLGPDEYV---FDQKK 395 Query: 79786 ATVSLGYIGLAETTAVFYGKNWIRDHGWDPEGKEFALSIVKRMNELCKQWSKAEGYHYSV 79607 LGY S+ Sbjct: 396 EETKLGY---------------------------------------------------SL 404 Query: 79606 YSTPAESLTDRFNRMDREKFGRIEGVTDHDFYTNSFHYPVWLQPTPMEKLSYEKDFPYYA 79427 Y+TP+ESL DRF R+DRE F E + +YTNS H V + P K YE +F A Sbjct: 405 YATPSESLCDRFCRLDREYFPEHEDILSKGYYTNSHHLDVERKVAPNVKFDYESNFTPIA 464 Query: 79426 SGGFINYCEYPCLQDNPKALEAVWDYAYNIGIGYLGTNTPIDHCFVCGFQGDFEPTEEGF 79247 SGG I+Y E P ++ P ALE V +YA + + Y G NTP+D C CGF G+ +E+GF Sbjct: 465 SGGCISYVELPDMKRFPDALEWVINYAAS-KVHYFGINTPVDSCGKCGFLGETVASEDGF 523 Query: 79246 KCPECGNSNPDKCNVTKRTCGYLGSPVQRPMVHGRHEEIAHRVKH 79112 KCP CGN +P+ VT+R CGYLG+P RP G+ E+ RVKH Sbjct: 524 KCPICGNHDPETLEVTRRVCGYLGNPGARPFNPGKQHEVMGRVKH 568 >ref|NP_116524.1|integrase Length = 374 Score = 200 bits (509), Expect = 2e-50 Identities = 118/321 (36%), Positives = 193/321 (60%), Gaps = 19/321 (5%) Frame = +2 Query: 41108 VINTINEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQ 41287 +++ I +E+S +Y+ W+++YK+ AI E+T K Y+ T +L+ +P++ +SE SYQ Sbjct: 52 IVDPIKQEIS--EYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQ 109 Query: 41288 KLINGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGK-QPRQKKTKYLN 41464 + +N +AE H +T FH +++ +I ++EG +Q+D T +A++KG + ++ K++N Sbjct: 110 RALNKFAETHAKASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVN 169 Query: 41465 QFELHAVLADL---KLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTW 41635 F+ + L D +L+P + ++ +++ TG+R SEA GL DD DF + T+ +TW Sbjct: 170 -FDEYKQLVDYFRNRLNPNYSSPTMLFIISITGMRASEAFGLVWDDIDFNNNTIKCRRTW 228 Query: 41636 NYKNG-GGFVPTKNASSVRKVQLD---WQLIMQLSVLLKNLPDD---KPI--FVNGKVYN 41788 NY+N GGF K + +R + +D QL+ K L + KPI FV Y Sbjct: 229 NYRNKVGGFKKPKTDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYR 288 Query: 41789 -----STANGILARHCKQAGVPV-ISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTT 41950 S L K+ + ++IHGLRHTHAS+LL+ GV I +VSKRLGHAS+ T Sbjct: 289 KIITLSALQNTLDHALKKLNISTPLTIHGLRHTHASVLLYHGVDIMTVSKRLGHASVAIT 348 Query: 41951 QETYLHVIRELENKDVDIVMD 42013 Q+TY+H+I+ELENKD D +++ Sbjct: 349 QQTYIHIIKELENKDKDKIIE 369 >ref|NP_076573.1|integrase Length = 374 Score = 200 bits (508), Expect = 3e-50 Identities = 117/321 (36%), Positives = 193/321 (60%), Gaps = 19/321 (5%) Frame = +2 Query: 41108 VINTINEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQ 41287 +++ I +E+S +Y+ W+++YK+ AI E+T K Y+ T +L+ +P++ +SE SYQ Sbjct: 52 IVDPIKQEIS--EYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQ 109 Query: 41288 KLINGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGK-QPRQKKTKYLN 41464 + +N +AE H +T FH +++ +I ++EG +Q+D T +A++KG + ++ K++N Sbjct: 110 RALNKFAETHAKASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVN 169 Query: 41465 QFELHAVLADL---KLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTW 41635 F+ + L D +L+P + ++ +++ TG+R SEA GL DD DF + T+ +TW Sbjct: 170 -FDEYKQLVDYFRNRLNPNYSSPTMLFIISITGMRASEAFGLVWDDIDFNNNTIKCRRTW 228 Query: 41636 NYKNG-GGFVPTKNASSVRKVQLD---WQLIMQLSVLLKNLPDD---KPI--FVNGKVYN 41788 NY+N GGF K + +R + +D QL+ K L + KPI FV Y Sbjct: 229 NYRNKVGGFKKPKTDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYR 288 Query: 41789 -----STANGILARHCKQAGVPV-ISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTT 41950 S L K+ + +++HGLRHTHAS+LL+ GV I +VSKRLGHAS+ T Sbjct: 289 KIITLSALQNTLDHALKKLNISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAIT 348 Query: 41951 QETYLHVIRELENKDVDIVMD 42013 Q+TY+H+I+ELENKD D +++ Sbjct: 349 QQTYIHIIKELENKDKDKIIE 369 >ref|NP_108680.1|integrase Length = 374 Score = 197 bits (502), Expect = 2e-49 Identities = 116/321 (36%), Positives = 192/321 (59%), Gaps = 19/321 (5%) Frame = +2 Query: 41108 VINTINEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQ 41287 +++ I +E+S +Y+ W+++YK+ AI E+T K Y+ T +L+ +P++ +SE SYQ Sbjct: 52 IVDPIKQEIS--EYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQ 109 Query: 41288 KLINGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGK-QPRQKKTKYLN 41464 + +N +AE H +T FH +++ +I ++EG +Q+D T +A++KG + ++ K++N Sbjct: 110 RALNKFAETHAKASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVN 169 Query: 41465 QFELHAVLADL---KLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTW 41635 F+ + L D +L+P + ++ +++ T +R SEA GL DD DF + T+ +TW Sbjct: 170 -FDEYKQLVDYFRNRLNPNYSSPTMLFIISITSMRASEAFGLVWDDIDFNNNTIKCRRTW 228 Query: 41636 NYKNG-GGFVPTKNASSVRKVQLD---WQLIMQLSVLLKNLPDD---KPI--FVNGKVYN 41788 NY+N GGF K + +R + +D QL+ K L + KPI FV Y Sbjct: 229 NYRNKVGGFKKPKTDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYR 288 Query: 41789 -----STANGILARHCKQAGVPV-ISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTT 41950 S L K+ + +++HGLRHTHAS+LL+ GV I +VSKRLGHAS+ T Sbjct: 289 KIITLSALQNTLDHALKKLNISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAIT 348 Query: 41951 QETYLHVIRELENKDVDIVMD 42013 Q+TY+H+I+ELENKD D +++ Sbjct: 349 QQTYIHIIKELENKDKDKIIE 369 >ref|NP_996675.1|integrase Length = 374 Score = 197 bits (501), Expect = 2e-49 Identities = 116/321 (36%), Positives = 192/321 (59%), Gaps = 19/321 (5%) Frame = +2 Query: 41108 VINTINEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQ 41287 +++ I +E+S +Y+ W+++Y + AI E+T K Y+ T +L+ +P++ +SE SYQ Sbjct: 52 IVDPIKQEIS--EYFKDWMELYTKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQ 109 Query: 41288 KLINGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGK-QPRQKKTKYLN 41464 + +N +AE H +T FH +++ +I ++EG +Q+D T +A++KG + ++ K++N Sbjct: 110 RALNKFAETHAKASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVN 169 Query: 41465 QFELHAVLADL---KLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTW 41635 F+ + L D +L+P + ++ +++ TG+R SEA GL DD DF + T+ +TW Sbjct: 170 -FDEYKQLVDYFRNRLNPNYSSPTMLFIISITGMRASEAFGLVWDDIDFNNNTIKCRRTW 228 Query: 41636 NYKNG-GGFVPTKNASSVRKVQLD---WQLIMQLSVLLKNLPDD---KPI--FVNGKVYN 41788 NY+N GGF K + +R + +D QL+ K L + KPI FV Y Sbjct: 229 NYRNKVGGFKKPKTDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYR 288 Query: 41789 -----STANGILARHCKQAGVPV-ISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTT 41950 S L K+ + +++HGLRHTHAS+LL+ GV I +VSKRLGHAS+ T Sbjct: 289 KIITLSALQNTLEHALKKLKISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAIT 348 Query: 41951 QETYLHVIRELENKDVDIVMD 42013 Q+TY+H+I+ELENKD D +++ Sbjct: 349 QQTYIHIIKELENKDKDKIIE 369 >ref|NP_695029.1|Integrase Length = 374 Score = 195 bits (495), Expect = 1e-48 Identities = 115/321 (35%), Positives = 192/321 (59%), Gaps = 19/321 (5%) Frame = +2 Query: 41108 VINTINEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQ 41287 +++ I +E+S +Y+ W+++YK+ AI E+T K Y+ T +L+ +P++ +SE SYQ Sbjct: 52 IVDPIKQEIS--EYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQ 109 Query: 41288 KLINGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGK-QPRQKKTKYLN 41464 + +N +AE H +T FH +++ +I ++EG +Q+D T +A++KG + ++ K++N Sbjct: 110 RALNKFAETHAKASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVN 169 Query: 41465 QFELHAVLADL---KLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTW 41635 F+ + L D +L+P + ++ +++ TG+R SEA GL DD F + + ++TW Sbjct: 170 -FDEYKQLVDYFRNRLNPNYSSPTMLFIISITGMRASEAFGLVWDDIKFDNNVIKCHRTW 228 Query: 41636 NYKNG-GGFVPTKNASSVRKVQLD---WQLIMQLSVLLKNLPDD---KPI--FVNGKVYN 41788 NY+N GGF K + +R + +D QL+ K L + KPI FV Y Sbjct: 229 NYRNKVGGFKKPKTDAGIRDIVIDDESMQLLKYFREQQKTLFESLGIKPIHDFVCYHPYR 288 Query: 41789 -----STANGILARHCKQAGVPV-ISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTT 41950 S L K+ + +++HGLRHTHAS+LL+ GV I +VSKRLGHAS+ T Sbjct: 289 KIITLSALQNTLEHALKKLKISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAIT 348 Query: 41951 QETYLHVIRELENKDVDIVMD 42013 Q+TY+H+I+ELENKD D +++ Sbjct: 349 QQTYIHIIKELENKDKDKIIE 369 >ref|NP_076696.1|integrase Length = 377 Score = 194 bits (493), Expect = 2e-48 Identities = 113/311 (36%), Positives = 182/311 (58%), Gaps = 18/311 (5%) Frame = +2 Query: 41117 TINEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLI 41296 T+++++ D++ QW++++K+G + + T +KY T + L+K + +RV YQ+++ Sbjct: 55 TVSQDILLTDHFKQWIEIFKKGKVSDGTYRKYLYTLSVLKKHFSTATIKTMNRVKYQEML 114 Query: 41297 NGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKG-KQPRQKKTKYLN--Q 41467 N +AE H + + ++ ++ + +D+ +I+ D T+ AI KG K + + KYL+ Sbjct: 115 NEFAEGHSDSSVKQINVHVRASLENLLDDFIIKNDFTKGAISKGGKGSKSAELKYLDFED 174 Query: 41468 FELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWN-YK 41644 F LA K++PI + ++I + A TG+RFSE LGLT D+ DF + V +TW+ YK Sbjct: 175 FTKLIALAKEKINPIYSSSFMIYIAAMTGMRFSELLGLTWDNVDFEKGQIYVKRTWDIYK 234 Query: 41645 NGGGFVPTKNASSVRKVQLDWQLIM-------QLSVLLKNL---PDDKPIFVN---GKVY 41785 N F PTKN SVR + +D + Q LLK L P+ +F N G + Sbjct: 235 NN--FAPTKNDQSVRFLAIDSSTMQVMINYKEQQEKLLKRLEIEPEHPFVFYNIKNGLIT 292 Query: 41786 NSTANGILARHCKQAGVP-VISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETY 41962 N++ N L CK+ G +I+ HGLRHTHAS +L+ G++I VSKRLGH+S+N T Y Sbjct: 293 NNSLNKQLRNMCKKLGFKKIITCHGLRHTHASTMLYKGINILYVSKRLGHSSLNVTMSVY 352 Query: 41963 LHVIRELENKD 41995 H+++ELE KD Sbjct: 353 SHILKELEEKD 363 >ref|NP_944999.1|putative anaerobic nucleoside diphosphate reductase Length = 714 Score = 191 bits (486), Expect = 1e-47 Identities = 205/764 (26%), Positives = 319/764 (41%), Gaps = 29/764 (3%) Frame = -2 Query: 81379 VLVEKRDGRVVDFDPINIISAV-KSAFGDLNKEVGPEEDAMIRGFANQVEGEIKERYAGP 81203 V + K++G + + D +++AV KSA KE+ P+ + ++ + ++ Sbjct: 4 VQIIKKNGSLEEPDIKKVLAAVTKSANRVGYKELPPDVTQALESAFMRILVKSTKQNNLL 63 Query: 81202 AKIEDIQNLVEHALIDAH--LYDVARAYTNYRL------DKDIQRAKATDVNEAVARFIN 81047 + DI ++VE AL + + +Y+ Y NYR D+ Q+ K T F+ Sbjct: 64 ISVNDIHSIVEGALAEVNHEIYESYSTYRNYRKEVAQNWDELYQKTKDT-------LFLG 116 Query: 81046 HDPTLIHENANKDSNVYSTQRDLLAGAVSKAAAFNM-LPPAVSNAHMKGDIHFHDADYSP 80870 ENAN DS++ ST+ ++ G ++K L P A KG I+ HD Sbjct: 117 D-----RENANFDSSLISTKGSIIRGYLTKEIFKQYHLTPEELEAIEKGFIYIHDLRDLI 171 Query: 80869 FTAQSNCSLPNFWDMLANGFTLGNAPMASPKSXXXXXXXXXXIMKDVASSQYGGQTANRA 80690 F NC L + +L GF + PKS ++ + Q+GG T Sbjct: 172 FGG-INCCLFDIGKVLKGGFEMSGIEYCEPKSVLSALQVIGDVVLSATAQQFGGFTLAEI 230 Query: 80689 DEHLAQYAKKDYEKFLEEARETIPDGMPVEFARRQVESAKKNEPAKLHFGSREPLPMDTP 80510 D+ L YAKK E+A G+P E V Sbjct: 231 DKVLVPYAKKSLRYHAEKAASY---GIPKEHYHNYV------------------------ 263 Query: 80509 FHTDVDELEQEREILAKIRTRKAIYDAMQTMEYQINSNRVSNGQTPFVTVGFGLGTDWFS 80330 +++L+ E + Q++E ++N+ S G F T+ FGL S Sbjct: 264 ----MEQLQIE------------LTQGFQSLEMKLNTVPCSRGDFAFTTLTFGLLDSDMS 307 Query: 80329 REVQR-------AILLNRIRGLGKEHHTAIFPKLVFTV---KHGVNADPGDPNYDLKQLA 80180 E R +L R+ G GK +FPKLV+ +H N G L A Sbjct: 308 NEDNRLQYMIASTLLDVRMNGQGKSKKPVVFPKLVYIYDQKRHDENICQGH----LYSKA 363 Query: 80179 LESATKRMYPDVVFYEN------IVKITGSFKAPMGCRSFLQGWINPETGKDEEDGRMNL 80018 +E +K MYPD + + + +G +PMGCR+FL + N E G++ GR N+ Sbjct: 364 IECCSKAMYPDFLSVSGHGAVAEVFERSGKVISPMGCRAFLSPYFN-ENGEEFYVGRANI 422 Query: 80017 GVVTVNVPRIAIESHGDKARFWKLFDERMEVAHQALQFRIMRCKEATPVNAPTLFRFGAF 79838 G V++N+P I S + FWK D+ +E+ + R + P F G Sbjct: 423 GAVSLNLPMIYQYSKENGLDFWKELDKYLEMIRSFHKKRYEMIANMPASSNPLAFTQGGL 482 Query: 79837 --GRLGANDNVD-QLFKNERATVSLGYIGLAETTAVFYGKNWIRDHGWDPEGKEFALSIV 79667 G D V + K+ T S G L E + GK + + G FA ++ Sbjct: 483 YKGNKKPTDKVGWDIVKS--FTASFGVTALDELAVLAEGKR-LHEVG----SCSFAYDVL 535 Query: 79666 KRMNELCKQWSKAEGYHYSVYSTPAESLTDRFNRMDREKFGRIEGVTDHDFYTNSFHYPV 79487 + +N +++ +G+ Y+VY TPAESL + R+ FG I+GV+D +++TNSFH V Sbjct: 536 EYINMKTEEFKNEDGFLYAVYGTPAESLCGTQLKQFRDMFGVIKGVSDKEYFTNSFHMNV 595 Query: 79486 WLQPTPMEKLSYEKDFPYYASGGFINYCEYPCLQDNPKALEAVWDYAYNIGIGYLGTNTP 79307 TP EK E+ F + GG I Y +N AL+ G Y G N Sbjct: 596 AADITPFEKQDLEEPFFHICRGGRIQYVRV-ANPENLSALKGCITRGMLKGF-YQGLNFD 653 Query: 79306 IDHCFVCGFQGDFEPTEEGFKCPECGNSNPDKCNVTKRTCGYLG 79175 + C CG + P + +C C + + +V R CGYLG Sbjct: 654 LAICEHCGNR----PKADVEECEVCHSHD---ISVINRVCGYLG 690 >ref|YP_164382.1|integrase Length = 369 Score = 184 bits (467), Expect = 2e-45 Identities = 108/298 (36%), Positives = 165/298 (55%), Gaps = 12/298 (4%) Frame = +2 Query: 41138 FCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLINGYAEHH 41317 F +Y+ W+ +YK T ++YK T ++ + + ++ +YQ +N YA H Sbjct: 61 FDEYFESWMKLYKSDVTNN-TKERYKNTLETIKNYFGSKPIQQINKRTYQAFLNEYARTH 119 Query: 41318 EHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKT-KYLNQFELHAVLAD 41494 TT + ++ + DA+DEG+I+ D TRKA I G +K K+L+ + +L Sbjct: 120 ARATTKKLNTHIRACVKDAIDEGVIRVDFTRKASISGDNKAKKDDEKHLHYRDSQKLLQA 179 Query: 41495 L--KLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNY--KNGGGFV 41662 + +LD ++ILL +G+RF+E +GL +DFDF T+S+NKTW Y K GF Sbjct: 180 VYERLDKSLT-HYIILLALTSGMRFAEIVGLKREDFDFKQNTISINKTWGYTKKMHEGFG 238 Query: 41663 PTKNASSVRKVQLDWQLIMQLSVLLKNLPDD-------KPIFVNGKVYNSTANGILARHC 41821 PTKN SVRK+++D Q + + L LP++ P + N AN +L Sbjct: 239 PTKNEQSVRKIKMDVQTMKAFNNLFDMLPENIHQLVFYSPSSKYKVISNGNANKLLKSLL 298 Query: 41822 KQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRELENKD 41995 + + IS+HGLRHTHAS+LL+ GVSI VS+RLGHA + TT Y H+++EL +D Sbjct: 299 GELKIEPISMHGLRHTHASVLLYKGVSIYYVSERLGHADIETTMNEYAHIVKELRTQD 356 >ref|NP_049990.1|integrase Length = 359 Score = 176 bits (447), Expect = 4e-43 Identities = 100/293 (34%), Positives = 161/293 (54%), Gaps = 1/293 (0%) Frame = +2 Query: 41120 INEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLIN 41299 ++E+++ DY+ QW +VYK+ + ++T K Y +Q + D KL YQ+++N Sbjct: 55 VDEDITLYDYFKQWCEVYKKPTVSKITYKAYINSQRKIELFFGDKKLKSITATEYQRVLN 114 Query: 41300 GYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQP-RQKKTKYLNQFEL 41476 YA+ H T F+ +K I AV EG I+R+ + A I K R +TK+L E Sbjct: 115 SYAKTHAQDTVERFNVHVKACIEMAVHEGYIKRNFCKFAKINAKNKGRDIETKFLEVEEY 174 Query: 41477 HAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGG 41656 ++ + P + ++AKTG+RF+E LGLT DD LSVNKTW+YKN G Sbjct: 175 ERLIYETSKHPEYASYAALYIIAKTGIRFAECLGLTVDDIKRDTGMLSVNKTWDYKNNTG 234 Query: 41657 FVPTKNASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFVNGKVYNSTANGILARHCKQAGV 41836 F+PTK SS+R++ LD + I N D P +G++ S +N + + ++ Sbjct: 235 FMPTKTKSSIREIPLDDEFI--------NFIDQLPPTDDGRILPSLSNNAVNKTLRKIVG 286 Query: 41837 PVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRELENKD 41995 + +H LRHT+AS L+ + + SVS+ LGH ++N T E Y H ++E ++++ Sbjct: 287 REVRVHSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEVYAHQLQEQKSRN 339 >ref|NP_695079.1|putative integrase Length = 359 Score = 173 bits (439), Expect = 3e-42 Identities = 99/293 (33%), Positives = 160/293 (54%), Gaps = 1/293 (0%) Frame = +2 Query: 41120 INEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLIN 41299 ++E+++ DY+ QW VYK+ + ++T K Y +Q + D KL YQ+++N Sbjct: 55 VDEDITLYDYFKQWCGVYKKPTVSKITYKAYINSQRKIELFFGDKKLKSITATEYQRVLN 114 Query: 41300 GYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQP-RQKKTKYLNQFEL 41476 YA+ H T F+ +K I AV EG I+R+ + A I K R +TK+L E Sbjct: 115 SYAKTHAQDTVERFNVHVKACIEMAVHEGYIKRNFCKFAKINAKNKGRDIETKFLEVEEY 174 Query: 41477 HAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGG 41656 ++ + P + +++KTG+RF+E LGLT DD LSVNKTW+YKN G Sbjct: 175 ERLIYETSKHPEYASYAALYIISKTGIRFAECLGLTVDDIKRDTGMLSVNKTWDYKNNTG 234 Query: 41657 FVPTKNASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFVNGKVYNSTANGILARHCKQAGV 41836 F+PTK SS+R++ LD + I N D P +G++ S +N + + ++ Sbjct: 235 FMPTKTKSSIREIPLDDEFI--------NFIDQLPPTDDGRLLPSLSNNAVNKTLRKIVG 286 Query: 41837 PVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRELENKD 41995 + +H LRHT+AS L+ + + SVS+ LGH ++N T E Y H ++E ++++ Sbjct: 287 REVRVHSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEVYAHQLQEQKSRN 339 >ref|NP_695147.1|integrase Length = 391 Score = 161 bits (408), Expect = 1e-38 Identities = 102/314 (32%), Positives = 160/314 (50%), Gaps = 27/314 (8%) Frame = +2 Query: 41135 SFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLINGYAEH 41314 SF YY +W++ + G + Y+ + P ++ + YQ IN +A+ Sbjct: 62 SFAAYYKKWMETFWIGKKGPDADRHYRDALKCIEHYFPHARMKDITHDQYQLFINNFAKS 121 Query: 41315 HEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKTKY----LNQFELHA 41482 H T M H+ +K +++A +EG+I+R+P + + G + R+KK + L+ F+ Sbjct: 122 HAKSTVMQRHNYIKKCLIEAFEEGIIKRNPAARINLTGNKNREKKEEVKFMSLDDFKKIM 181 Query: 41483 VLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFV 41662 A K DP +I+L+ TGLRF EA GLT D DF + ++++NKTW+Y++ F Sbjct: 182 NAAYRKFDPNSPSTSMIILMGATGLRFEEADGLTWDCVDFKNSSITINKTWDYRHKHDFG 241 Query: 41663 PTKNASSVRKVQLDWQLIMQLSVL------LKNLPDD----KPIFVNG---KVYNSTANG 41803 PTKN S+R +++D + L L +K + D K +F + N+ N Sbjct: 242 PTKNPQSMRTIKVDSTTMRVLKALHAHYAQIKLVRHDWNKRKLVFSKSDGIPLSNNAINK 301 Query: 41804 ILARHCKQAGVPV----------ISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQ 41953 +L C Q V + H LRHTHASLLL+ G I+ VSKRLGH + TT Sbjct: 302 MLRSLCVQNAVVARNSSGVIQKWYTCHALRHTHASLLLYEGRDISYVSKRLGHKDIMTTY 361 Query: 41954 ETYLHVIRELENKD 41995 TY HVI+E+ ++ Sbjct: 362 NTYTHVIQEMSARE 375 >ref|NP_680502.1|integrase Length = 385 Score = 153 bits (386), Expect = 4e-36 Identities = 111/332 (33%), Positives = 164/332 (49%), Gaps = 34/332 (10%) Frame = +2 Query: 41120 INEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLIN 41299 I+ ++F D+Y +W+ YK ++ E+TM KY + +R DLKL + R+ YQ+ IN Sbjct: 56 IDPVITFADWYDKWLHTYKIRSVSELTMTKYATSGTIIRNYFKDLKLIDLTRMIYQQFIN 115 Query: 41300 -----GYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKTKYL- 41461 GY H Q+ H AI+ A DEGLI+RD A + G R + TK+L Sbjct: 116 NYIDDGYGHKHARQSVQKLHSHAHQAIMAAADEGLIRRDYAAHAELGGTAGRSEDTKFLE 175 Query: 41462 -NQFELHAVLADLKLDPIPNWDWLILLVAKT----GLRFSEALGLTPDDFDFVHQTLSVN 41626 +QFE L D +D N + L++ +T G R E GLT +D D T+S++ Sbjct: 176 ADQFE---KLRDY-VDQFANPQRIALMMVQTAIYSGARLGEIGGLTWEDIDEKKSTISID 231 Query: 41627 KTWNY----KNGGG--------FVPTKNASSVRKVQLDWQLIMQLSVL-----LKNLPDD 41755 KT+ Y +N G F PTK SSVR +++ LI L L +K + + Sbjct: 232 KTFKYRFVIRNADGSWPDREKVFGPTKTPSSVRTIKVSPVLIASLHKLILADRIKAINNP 291 Query: 41756 KPIFVNG----KVYNSTANGILARHCKQAGV--PVISIHGLRHTHASLLLFAGVSIASVS 41917 + G +Y++ N L R K G+ P HGLRHTH S LL+ G+ I VS Sbjct: 292 YHLLFLGPTGLPIYSNGVNKELRRALKHLGIERPGFGFHGLRHTHGSYLLYKGLDIQYVS 351 Query: 41918 KRLGHASMNTTQETYLHVIRELENKDVDIVMD 42013 RLGH ++ T + Y H++ + K + M+ Sbjct: 352 HRLGHENVGITTKIYTHLLDAMTQKQDEKAMN 383 >ref|NP_835691.1|similar to DNA helicase Length = 670 Score = 132 bits (331), Expect = 1e-29 Identities = 133/512 (25%), Positives = 218/512 (42%), Gaps = 27/512 (5%) Frame = -3 Query: 96579 DLKIIDPKSYEVPDSLKHILRPYQVEGFQWLNTLCDKGFGGILADEMGLGKSVQLIALLL 96400 +L + + VP + P+Q G ++ + + G ++ADEMG GK++Q Sbjct: 86 ELSSVTSSDFAVPAPTGYDYFPFQKAGVHFVTEVFKEYPGALIADEMGTGKTIQ------ 139 Query: 96399 SRYQRNAGEMGDGSLGPSLIVCPASLVYNWGAEFTKFAPSFNAVVVA-GTKAERRTAIGR 96223 +AG + + L+VCPASL YNW E ++ ++V G + + Sbjct: 140 -----SAGVINVMNPDRVLVVCPASLKYNWERELKRWVVHEKEIIVVNGNEVDFSL---- 190 Query: 96222 AFRADEPTVLITSYDLLRR-DVDDYTANEQRFNVMALDEAQYIKNHTTKIXXXXXXXXAD 96046 + T+ I +YD+L R +DY ++++ +DE YIKN TK Sbjct: 191 -----KNTIYIINYDILHRISEEDYA-----YDLVIVDECHYIKNPKTKRSGFVKSIVKS 240 Query: 96045 HR------FALTGTPIENRLSELWSIFDFLMPGLLGSYKRFHERYELPISNARAADGSTA 95884 LTGTPI NR EL+ I + P + G++ + +RY N D A Sbjct: 241 SIEQGGKVLFLTGTPIVNRPIELYPILEMAAPKVFGNFWGYAKRYCNAYYNGYGWDFRGA 300 Query: 95883 EGRAAAQVNPEAARVSRQLQSLVGVFIKRRLKSQVLTDLPDKLETTLTVRLAGEQRKLYA 95704 Q +L+S + + RRLK VL +LP K + V+L K++A Sbjct: 301 SNLEELQ---------GKLRSTIMI---RRLKKDVLKELPPKSRKIVPVKL----NKMFA 344 Query: 95703 AHE--------QRLRMQLE--------HSEEADFNTSKIRILAELTKLRQICCDPRLLYA 95572 E Q L+ + E AD + ++ + + + R YA Sbjct: 345 EEEIFKLAEDLQNLKNYISVLREFERVGVESADLAEAMAEFDEKMKVMFERVAEMRRFYA 404 Query: 95571 DAKDQSAKLAA--ITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTP 95398 K A AA I LV+ +G ++F+ ++I + +A+G+ Y ITG Sbjct: 405 IHK---APFAADYIVSLVKEEEVDG--LVVFAHHHDVFEIIQKVLEAKGITYARITGEEN 459 Query: 95397 KKKRLELVDQFNADDTPAFLISLKAGNTGLNLTGASVVIHADPWWNAAAQDQATDRAHRI 95218 +R + V+ F + L S+ A G+ LT A + + W QA DR HRI Sbjct: 460 VVQRQKAVEDFQSGKVDVVLCSILAAGVGITLTRAKTAVFVELDWVPGNILQAEDRLHRI 519 Query: 95217 GQ-TEDVNVYQVVAKDTIEERILELQHTKSEL 95125 GQ E V+++ +VA+ T++E + K E+ Sbjct: 520 GQEAECVDIHYIVARHTLDENFADYLTRKIEI 551 >ref|NP_511007.1|integrase Length = 384 Score = 128 bits (321), Expect = 2e-28 Identities = 86/301 (28%), Positives = 147/301 (48%), Gaps = 15/301 (4%) Frame = +2 Query: 41126 EEMSFCDYYSQWVDVYKEGAIREVTMKKYKLT-QAWLRKLIPDLKLSEFDRVSYQKLING 41302 +E +F ++Y+ ++ +K+G + T+ Y L ++ +KL+ D V YQ+ IN Sbjct: 55 KEWNFKEFYTLFMKTFKDGKSSQSTINLYDLAYNQFVDYFDEKIKLNSIDAVQYQQFINH 114 Query: 41303 YAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKTKYLNQFELHA 41482 + + T H +++ AV G ++++PT A I G+ + K +++ ++H Sbjct: 115 LSVDYAISTVDTRHRKIRAIFNKAVHLGYMKKNPTIGAHISGQDVAKNKAQFMETDKVHL 174 Query: 41483 VLADL-KLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGF 41659 +L +L K I +I L +TG+RF E + LT D +F ++++VNK W+YK F Sbjct: 175 LLEELAKFHSISRA--VIFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTF 232 Query: 41660 VPTKNASSVRKVQLDWQLIMQLSVLLKNLPD-------DKPIFV------NGKVYNSTAN 41800 + TK S R + +D L L D P+ + N V N++ N Sbjct: 233 IDTKTKKS-RVIYIDNSTAQYLHSYLNWHTDYMKEHAIKNPLMLLFITYHNKPVDNASCN 291 Query: 41801 GILARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRE 41980 L + C +++H LRHTH L + AG+ I V+ RLGH +NTT + Y H+ Sbjct: 292 KALKKICSTINSEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLSSN 351 Query: 41981 L 41983 L Sbjct: 352 L 352 >ref|NP_803356.1|integrase Length = 345 Score = 116 bits (290), Expect = 6e-25 Identities = 82/298 (27%), Positives = 145/298 (48%), Gaps = 6/298 (2%) Frame = +2 Query: 41120 INEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRK-LIPDLKLSEFDRVSYQKLI 41296 I+ ++ +Y+ W+ YK+ ++E T + Y+ ++K I ++LS+ +R YQK I Sbjct: 50 IDNYITLAEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFI 109 Query: 41297 NGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIK-GKQPRQKKTKYLNQFE 41473 N Y++ H +T + ++ A+ DA+ +GLI ++P K K GK + ++ K+++ E Sbjct: 110 NDYSKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTE 169 Query: 41474 LHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGG 41653 + +L D + ++ TG R S A + + + V T+ +++ Sbjct: 170 -YEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER------- 221 Query: 41654 GFVPTKNASSVRKVQL---DWQLIMQLSVLLKNLPDDKPIFVNGKVYNSTA-NGILARHC 41821 K +S R + + D + IM + D G + N A N L C Sbjct: 222 -----KTDTSPRYISIAKSDMKHIMDVISTFAISYDGYIFKEAGSIINLQAINNALKSAC 276 Query: 41822 KQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRELENKD 41995 + +P+I+ H LRHTH S LL GVSI +SKRLGH ++ T Y H++ E N++ Sbjct: 277 RVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334 >ref|NP_835517.1|integrase Length = 345 Score = 112 bits (281), Expect = 7e-24 Identities = 81/298 (27%), Positives = 145/298 (48%), Gaps = 6/298 (2%) Frame = +2 Query: 41120 INEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRK-LIPDLKLSEFDRVSYQKLI 41296 I+ ++ +Y+ W+ YK+ ++E T + Y+ ++K I ++LS+ +R YQK I Sbjct: 50 IDNYITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFI 109 Query: 41297 NGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIK-GKQPRQKKTKYLNQFE 41473 N +++ H +T + ++ A+ DA+ +GLI ++P K K GK + ++ K+++ E Sbjct: 110 NDHSKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTE 169 Query: 41474 LHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGG 41653 + +L D + ++ TG R S A + + + V T+ +++ Sbjct: 170 -YEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER------- 221 Query: 41654 GFVPTKNASSVRKVQL---DWQLIMQLSVLLKNLPDDKPIFVNGKVYNSTA-NGILARHC 41821 K +S R + + D + IM + D G + N A N L C Sbjct: 222 -----KTDTSPRYISIAKSDMKHIMDVISTFAISYDGYIFKEAGSIINLQAINNALKSAC 276 Query: 41822 KQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRELENKD 41995 + +P+I+ H LRHTH S LL GVSI +SKRLGH ++ T Y H++ E N++ Sbjct: 277 RVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334 >ref|NP_818603.1|gp65 Length = 653 Score = 106 bits (264), Expect = 6e-22 Identities = 121/511 (23%), Positives = 213/511 (41%), Gaps = 53/511 (10%) Frame = -3 Query: 96519 RPYQVEGFQWLNTLCDKGFGGILADEMGLGKSVQLIALLLSRYQRNAGEMGDGSLGPSLI 96340 +P+Q+ G ++ + + ++AD+ GLGK++Q+IA LL R G L+ Sbjct: 128 KPWQIPGAAFVVSQKEV----VIADQPGLGKTLQVIAALLEMQTR----------GAILV 173 Query: 96339 VCPASLV-YNWGAEFTKFAPSFNAVVVAGTKA---ERRTAIGRAFRADEPTVLI-----T 96187 V P + V W E ++ V V ++A ER+ + RA E + + Sbjct: 174 VAPKTAVEVTWPDEIARWIGPNENVFVINSEAKPDERKARVLRAKALAEQGERVWVLTGS 233 Query: 96186 SYDLLRRDVDDY---TANEQR------------------FNVMALDEAQYIKNHTTKIXX 96070 SY ++ + DDY +E++ F+ + +DE+Q + +T Sbjct: 234 SYIRIKAEFDDYGNYLRDEKKQKIVRAVGHTVADLFRMSFSAVIVDESQEVLACSTGNKK 293 Query: 96069 XXXXXXADH----------RFALTGTPIENRLSELWSIFDFLMPGLLGSYKRFHERYELP 95920 R A++GTP + +W ++L P SY ++ R+ Sbjct: 294 KWSAQRTGMGALDIVPGAPRIAISGTPFRGKTENIWGTLNWLAPKKYTSYWKWVRRHYGV 353 Query: 95919 ISN-----ARAADGSTA--EGRAAAQVNPEAARVSRQLQSLVGVFIKRRLKSQVLTDLPD 95761 + N A G T E R +++ P R + G +L D D Sbjct: 354 VDNWDSGEAHMEKGDTIRDEKRFFSELRPILIRRTHAELRRQGFITGEKLYGGTPLDPND 413 Query: 95760 -KLETTLTVRLAGEQRKLYAAHEQRLRMQLE----HSEEADFNTSKIRILAELTKLRQIC 95596 K + + L +Q+K Y + + LE +E N S LAE+ +L+Q+ Sbjct: 414 PKSPVAVWLPLTPKQQKQYDQILKDAVITLESLAGEKDEVVVNGS----LAEMVRLKQVA 469 Query: 95595 CDPRLLYADAKDQSAKLAAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYT 95416 L + S K+ I + ++ G K ++ SQFT FL+L++ D G+R+Y Sbjct: 470 GSALGLDVKPELPSNKIEWIKNFLSERISAGTKTVVASQFTQFLELLSRECDKAGIRHYL 529 Query: 95415 ITGSTPKKKRLELVDQFNADD-TPAFLISLKAGNTGLNLTGASVVIHADPWWNAAAQDQA 95239 TG T +R + +F ++ L++ K+G L L A V+ D W Q+Q Sbjct: 530 YTGKTVGSERARIKHEFQSESGEMVVLLNTKSGGLSLTLDAADDVVVCDQTWIPDDQEQV 589 Query: 95238 TDRAHRIGQTEDVNVYQVVAKDTIEERILEL 95146 +RA+ + +VN++ + + TI+E I L Sbjct: 590 ENRAYGRERDHNVNIWNLCSLGTIDEDIAVL 620 >ref|YP_025047.1|putative integrase Length = 389 Score = 104 bits (259), Expect = 2e-21 Identities = 86/315 (27%), Positives = 143/315 (45%), Gaps = 32/315 (10%) Frame = +2 Query: 41126 EEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLINGY 41305 +++ DY+ QW + Y+ T+ +YKL + L+ KL+ + +QK IN + Sbjct: 58 QDVLLLDYWDQWAETYRTNGKSINTVYRYKLFRKHLKSRFDGRKLNSIRPIEWQKFINDF 117 Query: 41306 A--EHHEHQTTMD------------FHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQ 41443 A + + +TT + ++G + A++E ++ D T G + Sbjct: 118 AAGKDRKEKTTRKRPRERSKDVVTKMNSYVRGMVKAAINERILFSDFTFGTKTSGVRS-S 176 Query: 41444 KKTKYLNQFELHAVLA-DLKLDPIPNWDWLILLVAK-TGLRFSEALGLTPDDFDFVHQTL 41617 K K L+ + V A ++ N L + + TG+R SE L LT D D + Sbjct: 177 GKVKVLDSHDFAKVKAIAIERASYRNIGALAVYIGSMTGMRISEVLALTWPDIDTKLGVI 236 Query: 41618 SVNKTWNYKNGGGFVPTKNASSVRKVQLDWQLIMQL---------SVLLKNLPDDKPIFV 41770 V ++W++ G GF PTK SSVR +++ +I L S L D+ + + Sbjct: 237 HVTRSWDHLYGTGFKPTKTDSSVRDIEISPSVIELLNKIHQEQAASYLRTGYRDEDQMIM 296 Query: 41771 NGKVYN----STANGILARHCKQAGVPV---ISIHGLRHTHASLLLFAGVSIASVSKRLG 41929 +N S N L +A +P I+ HGLRH+H S L+ GV I +SKRLG Sbjct: 297 RDPRHNVITDSACNKALHVIQNKAEIPENKQITFHGLRHSHVSYLISKGVDIYYISKRLG 356 Query: 41930 HASMNTTQETYLHVI 41974 H+ + T + Y H++ Sbjct: 357 HSDVTITMKVYGHLL 371 >ref|NP_943918.1|NrdG anaerobic NTP reductase small subunit Length = 159 Score = 102 bits (253), Expect = 1e-20 Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 4/155 (2%) Frame = -2 Query: 78742 IADYKTFIVTDGEGVRNSLYVSGCPFHCVDCFNASIWDFQAGHEYTQKLEDKIIEDLKAP 78563 I DYK+ V +G G R S++++GC C CF+ S W + E +L + D+ Sbjct: 3 ILDYKSLDVLNGTGTRASIWLAGCSHQCKGCFSKSTWKWDGKTEEEIQLRKLVERDMNDS 62 Query: 78562 WV--QGITFLGGEPFL--NTPVLVPLAQRIRQEFGHTKDIWSWTGYTWEELMRPGETPDK 78395 + +GI+ LGG+P N L+ + R EF TK +W WTGYT EE + E Sbjct: 63 RIKREGISLLGGDPLYDRNLDCLIEFLKWFRAEF-PTKTVWLWTGYTREECLL--EPKKN 119 Query: 78394 LELLHLIDILVDGRYLRDQKDSLLQFRGSRNQRIL 78290 + + LID+LVDG+++ + K+ L+FRGS NQRI+ Sbjct: 120 VIVASLIDVLVDGKFVEELKNVDLKFRGSENQRII 154 >ref|NP_046572.1|ABC transporter Length = 705 Score = 99.4 bits (246), Expect = 8e-20 Identities = 90/357 (25%), Positives = 155/357 (43%), Gaps = 1/357 (0%) Frame = -2 Query: 54769 LQGIRVVKSYNRESFEVSKFG-RISQRIFKDFTKAERIMSFNSPLMMICIYGSMILIAWM 54593 L+ + V S N+ SF + KF +++ F+ A+ ++S N L + I+I W+ Sbjct: 351 LKNMTTVYSLNKTSFFLEKFHLTYDKQLNSTFSVAKAVIS-NEILKGLIQNSFTIIILWV 409 Query: 54592 GAQQIVASGNNPAVGLTTGDLTALVTYXXXXXXXXXXXXXXXXXXXXSQASAERICQVLQ 54413 G +Q++ ++ G L + T + ++ R V+ Sbjct: 410 GTRQVLNDS------MSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHVASIRFFDVVN 463 Query: 54412 EESTVQNPAQPVTDMADGSIEFDHVTFRYSDSSEKPVLDDINLKIRSGMTVGIVGGTGSA 54233 VQ + D V + +++DINL + V I+G +G+ Sbjct: 464 YP--VQQDSNENLTELDFIQNIKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTG 521 Query: 54232 KSSLVQLVPRLYDVSSGSLKVGGVDVRDYDLEALRDQVAMVLQKNVLFSGTIAENLRWGN 54053 KS+ + + +LY V S+ + G+D+ YD ++R ++ + + LF GTI ENL G Sbjct: 522 KSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGE 581 Query: 54052 PNATDEEIRHAAQLAQADGFVQEFPDKYDTYIEQGGTNVSGGQRQRLCIARAXXXXXXXX 53873 EI +A ++Q F+ +Y + + G+N+S GQ+QRL +ARA Sbjct: 582 -IFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVL 640 Query: 53872 XLDDSTSAVDTKTDKLIRSAFHNEIPDTTKIIIAQRVASVQESDMILVMDSGRIMAS 53702 LD+S S +D KLI H D I+I S + + LV + RI+ S Sbjct: 641 ILDESLSNIDPDNTKLIYETLHR--MDCLIILITHNDPSNFKYNKKLVFRNNRIIES 695 Score = 69.7 bits (169), Expect = 6e-11 Identities = 44/178 (24%), Positives = 88/178 (49%), Gaps = 1/178 (0%) Frame = -1 Query: 52187 DVRFTNVTFGYNPDKPVLHDITWFAKPGQKIALXXXXXXXXXXXTNLINRFYDIQHGQIL 52008 +++ N+ G +P + ++ DI K+ + +++ Y + I Sbjct: 482 NIKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIY 541 Query: 52007 YDGISVAGIKKPDLRRSLGIVLQDVNLFTGTVMDNIRYGRLNATDEECIEAARLVN-ADS 51831 +G+ + +R+ + + ++ LF GT+ +N+ G + D+ IE A +++ Sbjct: 542 LNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEI--FDQNEIENACIMSQCHE 599 Query: 51830 FIRMLPEGYNTVLEGDGSGLSQGQRQLISIARAAVADPPALILDEATSSIDTRTEEVV 51657 FI L + Y+ L +GS LS GQ+Q +++ARA + P LILDE+ S+ID +++ Sbjct: 600 FICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLI 657 Score = 60.5 bits (145), Expect = 4e-08 Identities = 58/228 (25%), Positives = 116/228 (50%), Gaps = 3/228 (1%) Frame = -2 Query: 127030 RQDREGGLTMSDATQPILKAEHLGITFGGLK-AVSNFNMTINKGELIGLIGPNGAGKTTV 126854 +QD LT D Q I K +L I ++ V + N+ +++ + + +IG +G GK+T Sbjct: 467 QQDSNENLTELDFIQNI-KTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTF 525 Query: 126853 FNLLTGVYKPTEGEFWLDGTRMNGKKTYQVVRAGIARTFQNIRLFKQLTVEENVLVA--F 126680 L+ +YK + +L+G +N + + +R I +N LFK T++EN+ + F Sbjct: 526 AKSLSKLYKVPDKSIYLNGLDIN-RYDHLSIRKRIVYIDENPFLFKG-TIKENLCMGEIF 583 Query: 126679 DESFTYHMGSAIFRTPGFWKQENEMHEKAIDLLRIFNLEGLATTQAANLPYGQQRKLEIA 126500 D++ + +A ++ HE +L + ++ + + +NL GQ+++L +A Sbjct: 584 DQN---EIENACIM--------SQCHEFICNLDKQYSYK--LSENGSNLSTGQKQRLALA 630 Query: 126499 RALATGMKLLLLDEPAAGMNPTETEDLLHCINTIRDRFGIAILLIEHD 126356 RA+ ++L+LDE + ++P T+ + ++ R I+LI H+ Sbjct: 631 RAILHQPQVLILDESLSNIDPDNTKLIYETLH----RMDCLIILITHN 674 Score = 54.3 bits (129), Expect = 3e-06 Identities = 40/181 (22%), Positives = 91/181 (50%), Gaps = 4/181 (2%) Frame = -1 Query: 126095 VKGISLKVNDGEIVSLIGANGAGKTTTLHTITGLVPAKSGSITYDGHDLLKTHANKIVTL 125916 V+ I+L ++ + V +IG +G GK+T +++ L SI +G D + + + + Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLD-INRYDHLSIRK 557 Query: 125915 GMAHVPEGRHVFTRMSVQENLEMGAF----SLKDQSSLGKDLEMVFDYFPRLKERRRQLA 125748 + ++ E +F + +++ENL MG +++ + + E + + + + + Sbjct: 558 RIVYIDENPFLF-KGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG 616 Query: 125747 GTLSGGEQQMVAMGRALMSHPKTILMDEPSMGLSPLLVKEIFDIIVTLRKRGITVLLVEQ 125568 LS G++Q +A+ RA++ P+ +++DE + P K I++ TL + ++L+ Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYE---TLHRMDCLIILITH 673 Query: 125567 N 125565 N Sbjct: 674 N 674 >ref|NP_795660.1|putative integrase Length = 362 Score = 96.3 bits (238), Expect = 6e-19 Identities = 80/309 (25%), Positives = 138/309 (44%), Gaps = 4/309 (1%) Frame = +2 Query: 41123 NEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLING 41302 N++ +F D W + YK + ++ ++ I ++S+ ++ Q LIN Sbjct: 63 NDKTTFDDAARLWFEQYKNTVKPSTFLVNQNYYKSTIKPHIGKSQISKITVMACQNLINH 122 Query: 41303 YAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKTKYLNQFELHA 41482 A++ + + +++ AV G+I+ +P + I K+ + ++ EL Sbjct: 123 LAQYSACASYISVINRI---FKFAVHLGIIENNPMDRTIRARCTYAHKEKMFYSKEELLI 179 Query: 41483 VLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFV 41662 L +K + + L+A GLR EA+ L DFDF + T+S+ KT G + Sbjct: 180 FLDIVKKEESLEMLLIYRLLAYGGLRIGEAVALYDTDFDFTNNTISITKTLAQTKAGKVI 239 Query: 41663 PT-KNASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFVNGKVYN---STANGILARHCKQA 41830 K S R + +D + + ++ +P+ + +V+N ST L R ++ Sbjct: 240 QNPKTKKSSRTISMDQETMRLAKEYMRQ--SVRPLHGSFRVFNLLTSTVRRRLKRTVERH 297 Query: 41831 GVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRELENKDVDIVM 42010 + I+ HG RHTHASLL AGV +RLGHA ++ T + Y H L D V Sbjct: 298 HLKKINPHGFRHTHASLLFEAGVPAKLAQERLGHAKISITMDLYTH----LSKNQTDNVA 353 Query: 42011 DNARDFAQI 42037 + DF I Sbjct: 354 EKLADFIAI 362 >ref|NP_891623.1|anaerobic NTP reductase small subunit Length = 167 Score = 95.9 bits (237), Expect = 8e-19 Identities = 56/154 (36%), Positives = 88/154 (57%), Gaps = 3/154 (1%) Frame = -2 Query: 78751 KRMIADYKTFIVTDGEGVRNSLYVSGCPFHCVDCFNASIWDFQAGHEYTQKLEDKIIEDL 78572 K AD K + +GEGVR SLYV+GC C CFN+S+ + + G +T I++ L Sbjct: 8 KLRYADIKDCDMVNGEGVRVSLYVTGCSHACDGCFNSSLLNPKNGEPFTDDTMGLILDLL 67 Query: 78571 KAPWVQGITFLGGEPFLNTPVLVPLAQRIRQE---FGHTKDIWSWTGYTWEELMRPGETP 78401 + ++QG+TFLGG+P + QRI E + KDIW W+GYT ++L Sbjct: 68 RPDFIQGLTFLGGDPLYKRN--LKGVQRIIDEVKSWMPNKDIWLWSGYTLDQL-----ND 120 Query: 78400 DKLELLHLIDILVDGRYLRDQKDSLLQFRGSRNQ 78299 ++ +++ +D+ +DGRY++D + +RGS NQ Sbjct: 121 EQRKIVESVDMFIDGRYIKDM-PTKKPWRGSDNQ 153 >ref|NP_438114.1|integrase-like protein Length = 365 Score = 94.7 bits (234), Expect = 2e-18 Identities = 77/312 (24%), Positives = 137/312 (43%), Gaps = 7/312 (2%) Frame = +2 Query: 41123 NEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLING 41302 N++ +F D W + Y+ + + L+ + L++++ + QK +N Sbjct: 63 NDKTTFDDVAKLWFEQYQNTVKPSTFLVNQNYYKTILKPHLGQLQMTKITVMICQKFVNC 122 Query: 41303 YAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKT---KYLNQFE 41473 + + + + +++ AV+ G+I +P K + + T KY + E Sbjct: 123 LSRYSGYTLYLSLANRI---FKFAVNLGIIDNNPMNKTLRSKCTYKNVDTLTKKYYTKEE 179 Query: 41474 LHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNY-KNG 41650 L+ L ++ + + L++ G R E + L DFDF + T+S+ KT Y K G Sbjct: 180 LNTFLRLVEAEETLEMRLIYRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIAYTKEG 239 Query: 41651 GGFVPTKNASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFVNGKVYNSTANGI---LARHC 41821 K S R + +D + + + +K KP+ + K++N ++ + L R Sbjct: 240 WAVQSPKTKKSNRTISMDAETMSLAKLYIKQ--SIKPLHGSFKLFNFASDTVRKRLDRFI 297 Query: 41822 KQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRELENKDVD 42001 + G+ I+ HG RHTHASLL AG+ +RLGHA + T + Y H L K D Sbjct: 298 LKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTH----LSKKSKD 353 Query: 42002 IVMDNARDFAQI 42037 V D + I Sbjct: 354 NVADKLAELVAI 365 >ref|NP_795541.1|putative integrase Length = 384 Score = 94.7 bits (234), Expect = 2e-18 Identities = 77/312 (24%), Positives = 137/312 (43%), Gaps = 7/312 (2%) Frame = +2 Query: 41123 NEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLING 41302 N++ +F D W + Y+ + + L+ + L++++ + QK +N Sbjct: 82 NDKTTFDDVAKLWFEQYQNTVKPSTFLVNQNYYKTILKPHLGQLQMTKITVMICQKFVNC 141 Query: 41303 YAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKT---KYLNQFE 41473 + + + + +++ AV+ G+I +P K + + T KY + E Sbjct: 142 LSRYSGYTLYLSLANRI---FKFAVNLGIIDNNPMNKTLRSKCTYKNVDTLTKKYYTKEE 198 Query: 41474 LHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNY-KNG 41650 L+ L ++ + + L++ G R E + L DFDF + T+S+ KT Y K G Sbjct: 199 LNTFLRLVEAEETLEMRLIYRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIAYTKEG 258 Query: 41651 GGFVPTKNASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFVNGKVYNSTANGI---LARHC 41821 K S R + +D + + + +K KP+ + K++N ++ + L R Sbjct: 259 WAVQSPKTKKSNRTISMDAETMSLAKLYIKQ--SIKPLHGSFKLFNFASDTVRKRLDRFI 316 Query: 41822 KQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRELENKDVD 42001 + G+ I+ HG RHTHASLL AG+ +RLGHA + T + Y H L K D Sbjct: 317 LKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTH----LSKKSKD 372 Query: 42002 IVMDNARDFAQI 42037 V D + I Sbjct: 373 NVADKLAELVAI 384 >ref|NP_663635.1|putative integrase Length = 359 Score = 94.0 bits (232), Expect = 3e-18 Identities = 88/319 (27%), Positives = 145/319 (45%), Gaps = 20/319 (6%) Frame = +2 Query: 41096 EPRVVINTINEE---------MSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIP 41248 + R ++ I EE M+F + Y +W+ VY E ++ T YK T+A+ + ++P Sbjct: 41 DARAALHNIQEEIDNPTPKSAMTFKELYDEWLLVY-EKEVQNSTY--YKTTRAFEKHVLP 97 Query: 41249 DL---KLSEFDRVSYQKLINGYAEHHEHQTTMDFHHQLKGAILDAVDEGL----IQRDPT 41407 + KLS+F + Q N +E + F +L G + + IQ +P Sbjct: 98 VIGSTKLSDFTPMELQNFRNDLSEK------LKFARKLFGMVRKVFNHAALLSYIQANPA 151 Query: 41408 RKAIIKG-KQPRQKKTKYLNQFELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLT 41584 +G K+ ++K + + EL +A ++ L ++A TG+R E L L Sbjct: 152 APVTSQGIKKKVEEKKDFYDTDELRDFMALVEKTNDIKKIALFRILAFTGIRKGELLALE 211 Query: 41585 PDDFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDWQLIMQLSVLLKNLPDDKPI 41764 D+ TL +NK ++ G + A+S R + LD + L L + P+ I Sbjct: 212 WKDYR--KSTLDINKAISHSPVGYEILPPKANSNRLLSLDEKTCKILDELHQTYPESTRI 269 Query: 41765 FVN---GKVYNSTANGILARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHA 41935 F + G + S L K+ + I IH RHTHASLL +G+S+ V RLGHA Sbjct: 270 FESENGGMLSPSKPRKWLLEITKEKEIEPIRIHAFRHTHASLLFESGMSLKQVQYRLGHA 329 Query: 41936 SMNTTQETYLHVIRELENK 41992 + TT Y H+ + ++K Sbjct: 330 DLKTTMNIYTHITKFAKDK 348 >ref|NP_076635.1|integrase Length = 359 Score = 93.6 bits (231), Expect = 4e-18 Identities = 88/319 (27%), Positives = 145/319 (45%), Gaps = 20/319 (6%) Frame = +2 Query: 41096 EPRVVINTINEE---------MSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIP 41248 + R ++ I EE M+F + Y +W+ VY E ++ T YK T+A+ + ++P Sbjct: 41 DARAALHNIQEEIDNPTPKSSMTFKELYDEWLLVY-EKEVQNSTY--YKTTRAFEKHVLP 97 Query: 41249 DL---KLSEFDRVSYQKLINGYAEHHEHQTTMDFHHQLKGAILDAVDEGL----IQRDPT 41407 + KLS+F + Q N +E + F +L G + + IQ +P Sbjct: 98 VIGSTKLSDFTPMELQNFRNDLSEK------LKFARKLFGMVRKVFNHAALLSYIQANPA 151 Query: 41408 RKAIIKG-KQPRQKKTKYLNQFELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLT 41584 +G K+ ++K + + EL +A ++ L ++A TG+R E L L Sbjct: 152 LPVTSQGIKKKVEEKKDFYDTDELRDFMALVEKTNDIKKIALFRILAFTGIRKGELLALE 211 Query: 41585 PDDFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDWQLIMQLSVLLKNLPDDKPI 41764 D+ TL +NK ++ G + A+S R + LD + L L + P+ I Sbjct: 212 WKDYR--KSTLDINKAISHSPVGYEILPPKANSNRLLSLDEKTCKILDELHQTYPESTRI 269 Query: 41765 FVN---GKVYNSTANGILARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHA 41935 F + G + S L K+ + I IH RHTHASLL +G+S+ V RLGHA Sbjct: 270 FESENGGMLSPSKPRKWLLEITKEKEIEPIRIHAFRHTHASLLFESGMSLKQVQYRLGHA 329 Query: 41936 SMNTTQETYLHVIRELENK 41992 + TT Y H+ + ++K Sbjct: 330 DLKTTMNIYTHITKFAKDK 348 >ref|NP_945003.1|putative nrdG Length = 161 Score = 93.2 bits (230), Expect = 5e-18 Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 2/150 (1%) Frame = -2 Query: 78736 DYKTFIVTDGEGVRNSLYVSGCPFHCVDCFNASIWDFQAGHEYTQKLEDKIIEDLKAPWV 78557 + + F +GEGVR SL+V+GC HC CFN W F AG E+T I+ L+ + Sbjct: 5 EIRPFDTANGEGVRVSLFVAGCKHHCEGCFNRESWKFNAGKEFTYANLYGILRLLEDDSL 64 Query: 78556 QGITFLGGEPF--LNTPVLVPLAQRIRQEFGHTKDIWSWTGYTWEELMRPGETPDKLELL 78383 G++ LGGEP N + + Q+++ + K IW WTG+ E + L+++ Sbjct: 65 SGLSILGGEPLDDRNVEEVTKICQKVKSIYPE-KSIWLWTGFQLHEKIH-------LDVM 116 Query: 78382 HLIDILVDGRYLRDQKDSLLQFRGSRNQRI 78293 +D+++DG+Y K ++ +RGS NQ + Sbjct: 117 KYVDVVIDGKY-DSSKPTVKPYRGSDNQNL 145 >ref|NP_861774.1|NrdG anaerobic NTP reductase, small subunit Length = 156 Score = 90.9 bits (224), Expect = 3e-17 Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 2/142 (1%) Frame = -2 Query: 78712 DGEGVRNSLYVSGCPFHCVDCFNASIWDFQAGHEYTQKLEDKIIEDLKAPWVQGITFLGG 78533 +G G R L+V+GC C C+N S W+ + G +T + +++IE L +++G+T GG Sbjct: 13 NGPGCRVVLFVTGCLHKCEGCYNKSTWNARNGVPFTGETLEQLIECLNNDYIEGLTITGG 72 Query: 78532 EPFL--NTPVLVPLAQRIRQEFGHTKDIWSWTGYTWEELMRPGETPDKLELLHLIDILVD 78359 +P N V+ +AQ ++ + + K IW WTGY +E++ +LE+L +D+++D Sbjct: 73 DPLYPDNRDVIHCIAQTVKNLYPN-KSIWLWTGYKFEDI-------KQLEMLKYVDVIID 124 Query: 78358 GRYLRDQKDSLLQFRGSRNQRI 78293 G+Y ++ L +RGS NQR+ Sbjct: 125 GKYEKNLPTKKL-WRGSDNQRL 145 >ref|NP_612851.1|putative integrase Length = 349 Score = 89.4 bits (220), Expect = 8e-17 Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 4/153 (2%) Frame = +2 Query: 41549 TGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFV-PTKNASSVRKVQLDWQLIMQL 41725 TG+R E + LT +D D ++T+++NKT+ NG + P K S RKV + L + Sbjct: 192 TGMRSGELMALTFNDIDLKNKTININKTYTRLNGKDIINPPKTPKSKRKVSIPNALCSYI 251 Query: 41726 SVLLKNLPDDKPIFVNGKVYNSTANGI---LARHCKQAGVPVISIHGLRHTHASLLLFAG 41896 + L D + ++++ T + + R CK++ +P+I IH LRH+HASLL+ G Sbjct: 252 ETYITKLYDYNK---SDRIFSFTKYFLVHEMKRVCKKSNIPIIRIHDLRHSHASLLIELG 308 Query: 41897 VSIASVSKRLGHASMNTTQETYLHVIRELENKD 41995 + +S+RLGH + TT +TY H+ NKD Sbjct: 309 FTPLLISERLGHEKVQTTLDTYSHL---YPNKD 338 >ref|NP_049688.1|NrdG anaerobic NTP reductase, small subunit Length = 156 Score = 88.2 bits (217), Expect = 2e-16 Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 2/142 (1%) Frame = -2 Query: 78712 DGEGVRNSLYVSGCPFHCVDCFNASIWDFQAGHEYTQKLEDKIIEDLKAPWVQGITFLGG 78533 +G G R L+V+GC C C+N S W+ + G +T ++ L ++QG+T GG Sbjct: 13 NGPGCRVVLFVTGCLHKCEGCYNRSTWNARNGQLFTMNTVKELASHLSKSYIQGLTLTGG 72 Query: 78532 EPFL--NTPVLVPLAQRIRQEFGHTKDIWSWTGYTWEELMRPGETPDKLELLHLIDILVD 78359 +P N + L ++ F KDIW WTGY +E++ +LE+L +D+++D Sbjct: 73 DPLYPQNREEISNLVSWVKARFPE-KDIWLWTGYKFEDI-------KQLEMLKYVDVIID 124 Query: 78358 GRYLRDQKDSLLQFRGSRNQRI 78293 G+Y ++ L +RGS NQR+ Sbjct: 125 GKYEKNLPTKKL-WRGSDNQRL 145 >ref|NP_899263.1|anaerobic NTP reductase small subunit Length = 158 Score = 86.7 bits (213), Expect = 5e-16 Identities = 47/144 (32%), Positives = 79/144 (54%), Gaps = 2/144 (1%) Frame = -2 Query: 78724 FIVTDGEGVRNSLYVSGCPFHCVDCFNASIWDFQAGHEYTQKLEDKIIEDLKAPWVQGIT 78545 F +GEGVR S++VSGC C C+N S WD G ++T++ ++ L+ G++ Sbjct: 9 FDFANGEGVRLSIFVSGCEHRCAGCYNESTWDPNDGIDFTEETLRDVLTSLEQH--DGLS 66 Query: 78544 FLGGEPFL--NTPVLVPLAQRIRQEFGHTKDIWSWTGYTWEELMRPGETPDKLELLHLID 78371 GG+P N ++ + + +++ + KDIW W+GY + + LE+++ ID Sbjct: 67 LTGGDPLYPGNREAILRICKAVKERY-PDKDIWMWSGYKLSRV-------EHLEIMNYID 118 Query: 78370 ILVDGRYLRDQKDSLLQFRGSRNQ 78299 + +DGRY R Q + +RGS NQ Sbjct: 119 VFIDGRYKRHQ-PTQKAWRGSDNQ 141 >ref|NP_862840.1|gp1 Length = 375 Score = 84.3 bits (207), Expect = 3e-15 Identities = 77/309 (24%), Positives = 142/309 (45%), Gaps = 20/309 (6%) Frame = +2 Query: 41126 EEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIP-DLKLSEFDRVSYQKLING 41302 E ++F + Y+ + + + + ++ T Y A ++K IP + L+ DR Q I Sbjct: 61 ESITFEEIYNLFYNSWSK-TVKASTKHNYTFVDATMKKEIPSNTLLANIDRRYIQSKIEN 119 Query: 41303 YAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQP-----RQKKTKYLNQ 41467 + + T +LK AV I+ + +I K +K+ K+L Sbjct: 120 IIDSKGYHTAYRVRSRLKSIFDYAVQYSYIENNEVNYTVIPKKPETLEDIEKKRNKFLTM 179 Query: 41468 FELHAVLADLKLDPIPN-WDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYK 41644 E+ A++ L P + ++ ++A TG+R+ E L + DF + + + ++ Sbjct: 180 QEIKALIDALNNKPYQQKYADMVTVLALTGMRYGELTALQLKNIDFENNKIEITGNFDSI 239 Query: 41645 NGGGFVPTKNASSVRKVQLDWQLI-------MQLSVLLKNLPDDKPIFVNGKVYNSTAN- 41800 N +P K A S+R + + +I ++L+ + L DD IF +V+NS Sbjct: 240 NKIKTLP-KTAKSIRTILVSDAVIKAIQRQVVRLTERYQPLKDDDYIFCL-EVWNSPITL 297 Query: 41801 ----GILARHCKQAGVPV-ISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYL 41965 I+ ++ +AG+ +S H RH+H S L AG+ I S+ R+GHA+ T E Y Sbjct: 298 PSFIQIIKKYGAKAGIEKNLSSHIFRHSHISYLAEAGLPIKSIMDRVGHANAKMTLEIYS 357 Query: 41966 HVIRELENK 41992 H +++E+K Sbjct: 358 HTTQDMEDK 366 >ref|NP_795678.1|putative helicase Length = 440 Score = 83.2 bits (204), Expect = 6e-15 Identities = 121/485 (24%), Positives = 205/485 (42%), Gaps = 20/485 (4%) Frame = -3 Query: 96522 LRPYQVEGFQWLNTLCDKGFGGILADEMGLGKSVQLIALLLSRYQRNAGEMGDGSLGPSL 96343 L YQ W+ + + G+L D MGLGK++ ++ + Q E D + L Sbjct: 3 LHEYQEYAKTWI---VEHPYCGLLLD-MGLGKTLTTLSAI-DEIQNIFSE--DHKI---L 52 Query: 96342 IVCPASLVYN-WGAEFTKFAPSFNAVVVAGTKAERRTAIGRAFRADEPTVLITSYDLLRR 96166 IV P + W E K+ F V G++ +R A+ AD Y + R Sbjct: 53 IVAPKKVAEETWPTEIGKWHFDFTYSKVLGSEGKRIEALET--EAD-------IYLINRE 103 Query: 96165 DVD---DYTANEQRFNVMALDEAQYIKNHTTKIXXXXXXXXA--DHRFALTGTPIENRLS 96001 +V +Y + F + +DE K+ +K LTGTP N L Sbjct: 104 NVTWLVEYYKTKWPFTFVVIDELSSFKSSKSKRFRALRKVRPKVQRLVGLTGTPAPNSLI 163 Query: 96000 ELWSIFDFLMPG--LLGSYKRFHERYELP-------ISNARAADGSTAEGRAAAQVNPEA 95848 +LW + G L S RF ++Y +P I + DG+ AE Sbjct: 164 DLWPQIYLMDRGARLETSQTRFKDKYFVPDKRNGLIIYSWALRDGAEAE----------- 212 Query: 95847 ARVSRQLQSLVGVFIKRRLKSQVLTDLPDKLETTLTVRLAGEQRKLYAAHEQRLRMQLEH 95668 + +++ I +K++ LP + ++V+L+ K Y E L ++ ++ Sbjct: 213 --IYNKIED-----ICVSMKAKDYLKLPPRTNNVVSVKLS--NMKAYKQLEADLVLEFKN 263 Query: 95667 SEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQSA----KLAAITELVETCVNEGK 95500 E + N++ +LA KL Q+ +Y D K A KL A+ +VE ++G+ Sbjct: 264 KEISAANSA---VLA--NKLLQMA--NGAIYDDDKATVAIHDDKLDALENVVEE--SQGQ 314 Query: 95499 KALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVDQFNADDTPAFLISLKAG 95320 L+F Q+ L+ + +RF P+ + L VD++N+ P L ++ Sbjct: 315 PILVFYQYQHDLERLKKRF--------------PQAEELTSVDKWNSGKIPILLCHPQSA 360 Query: 95319 NTGLNL-TGASVVIHADPWWNAAAQDQATDRAHRIGQTEDVNVYQVVAKDTIEERILELQ 95143 GLNL G +++ W+ QA R R GQTE V V+ +VA++T++E++L + Sbjct: 361 GHGLNLQKGGHIIVWFGLTWSLEYYQQANARLDRQGQTEPVIVHHIVAENTVDEKVLRIL 420 Query: 95142 HTKSE 95128 K + Sbjct: 421 QGKEK 425 >ref|NP_803332.1|helicase Length = 423 Score = 83.2 bits (204), Expect = 6e-15 Identities = 106/455 (23%), Positives = 189/455 (41%), Gaps = 19/455 (4%) Frame = -3 Query: 96441 MGLGKSVQLIALLLSRYQRNAGEMGDGSLGPSLIVCPASLVYN-WGAEFTKF--APSFNA 96271 MGLGK+V + + +M L++ P + + W E K+ Sbjct: 1 MGLGKTVSTLTAFSELQLLDTKKM--------LVIAPKQVAKDTWVDEVDKWNHLNHLKV 52 Query: 96270 VVVAGTKAERRTAIGRAFRADEPTVLITSYDLLRRDVDDYTANEQRFNVMALDEAQYIKN 96091 +V GT ER A+ E + +T+ + + D Y E F+++ +DE K+ Sbjct: 53 SLVLGTPKERNDALNT-----EADIYVTNKENTKWLCDQYK-KEWPFDMVVIDELSTFKS 106 Query: 96090 -HTTKIXXXXXXXXADHRF-ALTGTPIENRLSELWSIFDFLMPG--LLGSYKRFHERYEL 95923 + + +RF LTGTP N L +LW+ + G L S+ R+ ERY Sbjct: 107 PKSQRFKSIKKKLPLINRFIGLTGTPSPNSLQDLWAQVYLIDRGERLESSFSRYRERYFK 166 Query: 95922 P-------ISNARAADGSTAEGRAAAQVNPEAARVSRQLQSLVGVFIKRRLKSQVLTDLP 95764 P + N DGS ++ +++ + +K++ D+P Sbjct: 167 PTHQVSEHVFNWELRDGSEE-------------KIYERIEDIC-----LSMKAKDYLDMP 208 Query: 95763 DKLETTLTVRLAGEQRKLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPR 95584 D+++T TV L+ ++RK+YA E+ LE EE L++ KL Q+ Sbjct: 209 DRVDTKQTVVLSEKERKVYAELEK--NYILESEEEGTVVAQNGASLSQ--KLLQL--SNG 262 Query: 95583 LLYADAKD----QSAKLAAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYT 95416 +Y D +D KL + E++E ++G+ L+F F + I +RF T Sbjct: 263 AVYTDDEDVRLIHDKKLDKLEEIIEE--SQGQPILLFYNFKHDKERILQRFK----EATT 316 Query: 95415 ITGSTPKKKRLELVDQFNADDTPAFLISLKAGNTGLNL-TGASVVIHADPWWNAAAQDQA 95239 + S K +++N+ D + + GLNL G +++ W+ QA Sbjct: 317 LEDSNYK-------ERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQA 369 Query: 95238 TDRAHRIGQTEDVNVYQVVAKDTIEERILELQHTK 95134 R +R GQ ++ ++ +TI++R+ + K Sbjct: 370 NARLYRQGQNHTTIIHHIMTDNTIDQRVYKALQNK 404 >ref|NP_150133.1|integrase Length = 375 Score = 82.8 bits (203), Expect = 7e-15 Identities = 78/316 (24%), Positives = 140/316 (44%), Gaps = 19/316 (6%) Frame = +2 Query: 41111 INTINEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIP-DLKLSEFDRVSYQ 41287 + +I E + +Y W KE T K ++++IP D L+ DR Q Sbjct: 60 VESITFEEIYNLFYKSWAQTVKES-----TKHNCKSVDKKMKEVIPSDTILANLDRRFLQ 114 Query: 41288 KLINGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGK-----QPRQKKT 41452 + I E + + T H+L+G AV I+ + I K + +K+ Sbjct: 115 EAIEKIIESNGYITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRN 174 Query: 41453 KYLNQFELHAVLADL-KLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNK 41629 +L E+ A++ L + + + ++L++ TG+R+ E L + DF + + Sbjct: 175 NFLTMQEIKALVDVLNRREYHQKYADMVLVLTLTGMRYGELTALQLKNIDFETNKIEITG 234 Query: 41630 TWNYKNGGGFVPTKNASSVRKVQLDWQLI-------MQLSVLLKNLPDDKPIFVNGKVYN 41788 ++ N +P K +S+R +++ +I ++LS + L D IF K Sbjct: 235 NFDSVNKIKTLP-KTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQ 293 Query: 41789 STANG----ILARHCKQAGVPV-ISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQ 41953 T IL ++ KQA + +S H RH+H S L +G+ I S+ R+GH++ T Sbjct: 294 PTTIACFIQILKKYGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTL 353 Query: 41954 ETYLHVIRELENKDVD 42001 E Y H ++E+K V+ Sbjct: 354 EIYSHTTEDMEDKLVN 369 >ref|NP_795429.1|putative integrase Length = 362 Score = 82.0 bits (201), Expect = 1e-14 Identities = 81/291 (27%), Positives = 127/291 (43%), Gaps = 11/291 (3%) Frame = +2 Query: 41132 MSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLINGYAE 41311 M+F QW+ Y++ +K + + + +K+ + + + Q+L + Sbjct: 60 MTFGALTDQWLKEYEKTVQCSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEWCN 119 Query: 41312 HHEHQTTMDFHHQLKGAILD----AVDEGLIQRDPTRKAI---IKGKQPRQKKTKYLNQF 41470 + + ++ G + + AV G I +P IK K+ L+Q Sbjct: 120 D------LKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQL 173 Query: 41471 ELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNG 41650 + L + K D I L L+A TG+R E L LT DD + TLS+NK Sbjct: 174 KQFLELVE-KTDNIEKIA-LFRLLAFTGIRKGELLALTWDDLN--GNTLSINKAVTRTQV 229 Query: 41651 GGFVP-TKNASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFVN---GKVYNSTANGILARH 41818 G + TK SS R + LD + + L L + P +F + G + S L + Sbjct: 230 GLEIDVTKTKSSDRLISLDDETLEILLELHETFPTSTLMFQSESGGIMTPSLPRKWLLQI 289 Query: 41819 CKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHV 41971 K +P I+IHG RHTHASLL +G+S+ V RLGH + TT Y H+ Sbjct: 290 IKGTDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHI 340 >ref|NP_076780.1|integrase Length = 399 Score = 79.3 bits (194), Expect = 8e-14 Identities = 69/263 (26%), Positives = 121/263 (46%), Gaps = 23/263 (8%) Frame = +2 Query: 41285 QKLINGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQ--KKTKY 41458 QK G A+ ++ Q + + A+ G+I+ +P + I+ + Q K+ K+ Sbjct: 140 QKRTTGQAKRYKLQFNI-----INRIFQHALSLGIIENNPCQSVIVPQVKVEQAKKEIKF 194 Query: 41459 LNQFELHAVLADLKLDPIPNWD-----WLILLVAKTGLRFSEALGLTPDDFDFVHQTLSV 41623 + EL + L+ W L+ L+ +GLR EA+ L+ D +F +QT+SV Sbjct: 195 YKKSELAKLFNYLESLKSGQWSNEYFKALLRLLVASGLRIGEAMALSWSDINFQNQTVSV 254 Query: 41624 NKTWNYKNGGGFVPTKNASSVRKVQLD---------WQLIMQLSVLLKNLPDDKPIF--V 41770 +KT + P N S+ R + +D W + + P +F + Sbjct: 255 SKTTVRRFQIQDTPKSNKSN-RIISIDDKAIYVLKSWYFFQKKHFMKLGNPQQNLVFPKI 313 Query: 41771 NGKVYNS-----TANGILARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHA 41935 G V + N I+ K A +P++S HG R +HASL L A +S + +RLGH+ Sbjct: 314 EGGVMDYHNLIYKLNNII----KNAELPLLSFHGFRRSHASLCLNAEMSYKVIQERLGHS 369 Query: 41936 SMNTTQETYLHVIRELENKDVDI 42004 + T + Y H+ E +NK++++ Sbjct: 370 KLQLTMDLYSHLEPEKKNKELEL 392 >ref|NP_852561.1|DNA integration Length = 369 Score = 78.6 bits (192), Expect = 1e-13 Identities = 83/309 (26%), Positives = 138/309 (44%), Gaps = 24/309 (7%) Frame = +2 Query: 41144 DYYSQWVDVYKEGAIREVTMKKYKLTQAWLRK-LIPDLKLSEFDRVSYQKLINGYAEHHE 41320 DY + W+++ K +I + T YK A++ + +IP + + +++ + Y + Sbjct: 67 DYLNHWLEI-KSMSIEKSTFAGYK---AFINQHVIPSIGMVTLHKLNVIHIQKCYKTAID 122 Query: 41321 ----HQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAII--KGKQPRQKKTKY-LNQFELH 41479 + + + H LK A+ AV + +I R+P A I K K P Q T+ + +F H Sbjct: 123 KGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAH 182 Query: 41480 AVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGF 41659 + + + LL TG+R E LGL D DF T+++N+T + N Sbjct: 183 SQESRYHIG--------YLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKK 234 Query: 41660 VPTKNASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFVNGKVY--------NSTANGILAR 41815 N SS R + + + I L + +K F G Y N I Sbjct: 235 TAKTN-SSKRTIPVPNETIAALKKHKILINKEKLRF--GSAYLDQDLINCNEFGRIIKRA 291 Query: 41816 HCKQA--------GVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHV 41971 H +++ G+ I H LRHTHA+LLL GV+ +S+RLGH ++ T Y HV Sbjct: 292 HFRKSFIRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHV 351 Query: 41972 IRELENKDV 41998 + ++ + V Sbjct: 352 LPNMQEEAV 360 >ref|NP_076752.1|integrase Length = 394 Score = 75.1 bits (183), Expect = 2e-12 Identities = 82/319 (25%), Positives = 137/319 (42%), Gaps = 34/319 (10%) Frame = +2 Query: 41138 FCDYYSQWVDVYKEGAI-REVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLINGYAEH 41314 F D W D YK G R V + + +L ++ + + ++ + + + Q+++N + + Sbjct: 69 FKDIAMLWFDSYKLGVKPRTVQIMQTRLNN-YVLPALGEYRIDKVNSIILQQIVNQWMIN 127 Query: 41315 HEHQTTMDFHHQLKGAILD--------------AVDEGLIQRDPTRKAIIKGK--QPRQK 41446 Q +H+ KG D A+ GL++ +P I+ + +K Sbjct: 128 AS-QPLNGAYHRPKGKGKDFKIYFNIVERIFKHALSLGLVKDNPCVNVIVPKVRLESTEK 186 Query: 41447 KTKYLNQFELHAVLADLKLDPIPNWD-----WLILLVAKTGLRFSEALGLTPDDFDFVHQ 41611 K K+L +L + P + L L+ +GLR EA+ L+ D DF Sbjct: 187 KVKHLTAEQLKIFFEYIGALPKEKYTNELMTGLCRLLVASGLRIGEAVALSWSDIDFKTG 246 Query: 41612 TLSVNKTWNYKNGGGFVPTKNASSVRKVQLD---------WQLIMQLSVLLKNLPDDKPI 41764 ++SV+KT + P K S R V +D W+L + + + Sbjct: 247 SVSVSKT-TLRAVIQSTP-KTDKSNRIVLIDSKAVEVLKHWELFQAKYFMSIGKGKQELV 304 Query: 41765 FVN---GKVYNSTANGILARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHA 41935 F N G + T L + + +P + HG RH+HASLLL A V + +RLGHA Sbjct: 305 FPNRTGGVLDYQTMRPFLIKWLRACQLPQVGFHGFRHSHASLLLNADVPYKEIQERLGHA 364 Query: 41936 SMNTTQETYLHVIRELENK 41992 S+ T +TY H+ E +NK Sbjct: 365 SIKMTMDTYSHL--ESDNK 381 >ref|NP_945240.1|integrase Length = 380 Score = 74.7 bits (182), Expect = 2e-12 Identities = 73/330 (22%), Positives = 148/330 (44%), Gaps = 35/330 (10%) Frame = +2 Query: 41123 NEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPD----LKLSEFDRVSYQK 41290 + EM F + + QW YK+ E+ ++++ D +K+S+ D K Sbjct: 60 SSEMLFTELFDQWWSFYKQ----EIKRSSIASLNGNIKEIKDDFGIGIKVSKID----PK 111 Query: 41291 LINGYAEHHEHQTTMDFHHQ--LKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKT---- 41452 + Y + + ++ L A A+D G+I+ +P R+A K PR +KT Sbjct: 112 YVQSYLDRLDCSRNKKERNKSMLNLAFDYAIDLGIIKDNPARRA----KLPRVQKTLEDW 167 Query: 41453 -----KYLNQFELHAVLADLKLDPIPNWDWLIL-LVAKTGLRFSEALGLTPDDFDFVHQT 41614 KYL + E+ +L +L P L+ ++ G R EA+G+ P + D+ T Sbjct: 168 KKVGQKYLEEDEIKLLLKELYRRPSTYRIGLLSEFMSLNGCRIGEAVGIEPHNVDYESNT 227 Query: 41615 LSVNKTWNYKNG---GGFVPTKNASSVRKVQL---DWQLIMQLSVLLKNLPDDKPIFVNG 41776 L ++ T+++ NG G K +S R+ + + +++ ++ + + + P + + Sbjct: 228 LQLHGTYDHTNGYQKGEKTSPKTLASYRETVMTTREKEILEEMEFMNELEKNTNPRYKDM 287 Query: 41777 KVYNSTANGI----------LARHCKQAGVPV---ISIHGLRHTHASLLLFAGVSIASVS 41917 +T NG+ L + ++ P+ ++ H RHT S L V + ++ Sbjct: 288 GFIFTTKNGVPLQTNSFNLALKKANERLETPIQKNLTSHIFRHTLVSRLAENNVPLKAIM 347 Query: 41918 KRLGHASMNTTQETYLHVIRELENKDVDIV 42007 R+GH+ TT + Y H+ +++++ D++ Sbjct: 348 DRVGHSDAKTTTQIYTHITKQMKSTVADVM 377 >ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family Length = 92 Score = 73.6 bits (179), Expect = 4e-12 Identities = 37/88 (42%), Positives = 55/88 (62%) Frame = +3 Query: 14910 NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGR 15089 NK++L++K+A+K ++K + +V D EA+KSGE + + G + E +RAAR GR Sbjct: 2 NKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKGR 61 Query: 15090 NPRTGEQIDIPASYGVRISAGSLLKKAV 15173 NP+TGE+IDIPA+ LK AV Sbjct: 62 NPQTGEEIDIPATKAPAFKPAKALKDAV 89 >ref|NP_958716.1|Bbp47 Length = 464 Score = 72.4 bits (176), Expect = 1e-11 Identities = 112/462 (24%), Positives = 181/462 (39%), Gaps = 23/462 (4%) Frame = -3 Query: 96441 MGLGKSVQLIALLLSRYQRNAGEMGDGSLGPSLIVCPASLVYN-WGAEFTKFAPSFNAVV 96265 MG+GK+V + L + E+ + GPSL++ P + + W E TK+A N V Sbjct: 31 MGMGKTVSALTAL------DILELVEP--GPSLVLAPLRVAASTWPDESTKWAHLRNVEV 82 Query: 96264 --VAGTKAERRTAIGRAFRADEPTVLITSYDLLRRDVDDYTANEQRFNVMALDEAQYIKN 96091 V GT +RR A+ R V T+YD L ++ + + F + DE+ +K+ Sbjct: 83 SAVVGTPEQRRAALKRP-----ANVFTTNYDNLPWLIE-HLGDRWPFRKVVADESTKLKS 136 Query: 96090 HTTK-------IXXXXXXXXADHRFALTGTPIENRLSELWSIFDFLMPG--LLGSYKRFH 95938 + D LTGTP N L +LW FL G L S+ F Sbjct: 137 FRLQQGGKRAHALGRVAHAKVDRFIELTGTPSPNGLQDLWGQAWFLDKGERLGRSFGAFK 196 Query: 95937 ERYELPISNARAADGSTAEGRAAAQVNP---EAARVSRQLQSLVGVFIKRRLKSQVLTDL 95767 R+ I R A ++ P ++ +L+ L L ++ D+ Sbjct: 197 SRWFQSI--------QVGSDRHAVRLEPLPFAQQQIEDRLRDLC-----LSLDARDYFDI 243 Query: 95766 PDKLETTLTVRLAGEQRKLYAAHEQRLRMQLEHSEEAD-FN-TSKIRILAELTKLRQICC 95593 + + + V L + R+LY E+ + LE E + FN SK +L Sbjct: 244 SEPIVNVVRVELPAKARRLYRDMEREAFLALECGIEIEAFNAASKTIKCLQLANGAIYTD 303 Query: 95592 DPRLLYADAKDQSAKLAAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTI 95413 D +AD D KL A+ +V G L+ F S L + F QG Sbjct: 304 DTATTWADVHD--VKLQALESIVAEAA--GMPVLVAYHFKSDLARLQRAF-PQG------ 352 Query: 95412 TGSTPKKKRLELVDQFNADDTPAFLISLKAGNTGLNL-TGASVVIHADPWWNAAAQDQAT 95236 + + + +NA P + GLNL G +++ WW+ Q Sbjct: 353 ---RALDQNPQTIRDWNAGKIPLLFAHPASAGHGLNLQDGGNILAFFGHWWDLEQYQQII 409 Query: 95235 D-----RAHRIGQTEDVNVYQVVAKDTIEERILELQHTKSEL 95125 + R + G V +Y +VA DT++E ++ + +K E+ Sbjct: 410 ERIGPTRQAQAGHDRPVFIYHIVATDTMDELVMARRESKREV 451 >ref|NP_996608.1|DEAD box helicase Length = 464 Score = 72.4 bits (176), Expect = 1e-11 Identities = 112/462 (24%), Positives = 181/462 (39%), Gaps = 23/462 (4%) Frame = -3 Query: 96441 MGLGKSVQLIALLLSRYQRNAGEMGDGSLGPSLIVCPASLVYN-WGAEFTKFAPSFNAVV 96265 MG+GK+V + L + E+ + GPSL++ P + + W E TK+A N V Sbjct: 31 MGMGKTVSALTAL------DILELVEP--GPSLVLAPLRVAASTWPDESTKWAHLRNVEV 82 Query: 96264 --VAGTKAERRTAIGRAFRADEPTVLITSYDLLRRDVDDYTANEQRFNVMALDEAQYIKN 96091 V GT +RR A+ R V T+YD L ++ + + F + DE+ +K+ Sbjct: 83 SAVVGTPEQRRAALKRP-----ANVFTTNYDNLPWLIE-HLGDRWPFRKVVADESTKLKS 136 Query: 96090 HTTK-------IXXXXXXXXADHRFALTGTPIENRLSELWSIFDFLMPG--LLGSYKRFH 95938 + D LTGTP N L +LW FL G L S+ F Sbjct: 137 FRLQQGGKRAHALGRVAHAKVDRFIELTGTPSPNGLQDLWGQAWFLDKGERLGRSFGAFK 196 Query: 95937 ERYELPISNARAADGSTAEGRAAAQVNP---EAARVSRQLQSLVGVFIKRRLKSQVLTDL 95767 R+ I R A ++ P ++ +L+ L L ++ D+ Sbjct: 197 SRWFQSI--------QVGSDRHAVRLEPLPFAQQQIEDRLRDLC-----LSLDARDYFDI 243 Query: 95766 PDKLETTLTVRLAGEQRKLYAAHEQRLRMQLEHSEEAD-FN-TSKIRILAELTKLRQICC 95593 + + + V L + R+LY E+ + LE E + FN SK +L Sbjct: 244 SEPIVNVVRVELPAKARRLYRDMEREAFLALECGIEIEAFNAASKTIKCLQLANGAIYTD 303 Query: 95592 DPRLLYADAKDQSAKLAAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTI 95413 D +AD D KL A+ +V G L+ F S L + F QG Sbjct: 304 DTATTWADVHD--VKLQALESIVAEAA--GMPVLVAYHFKSDLARLQRAF-PQG------ 352 Query: 95412 TGSTPKKKRLELVDQFNADDTPAFLISLKAGNTGLNL-TGASVVIHADPWWNAAAQDQAT 95236 + + + +NA P + GLNL G +++ WW+ Q Sbjct: 353 ---RALDQNPQTIRDWNAGKIPLLFAHPASAGHGLNLQDGGNILAFFGHWWDLEQYQQII 409 Query: 95235 D-----RAHRIGQTEDVNVYQVVAKDTIEERILELQHTKSEL 95125 + R + G V +Y +VA DT++E ++ + +K E+ Sbjct: 410 ERIGPTRQAQAGHDRPVFIYHIVATDTMDELVMARRESKREV 451 >ref|NP_996656.1|DEAD box helicase Length = 464 Score = 72.4 bits (176), Expect = 1e-11 Identities = 112/462 (24%), Positives = 181/462 (39%), Gaps = 23/462 (4%) Frame = -3 Query: 96441 MGLGKSVQLIALLLSRYQRNAGEMGDGSLGPSLIVCPASLVYN-WGAEFTKFAPSFNAVV 96265 MG+GK+V + L + E+ + GPSL++ P + + W E TK+A N V Sbjct: 31 MGMGKTVSALTAL------DILELVEP--GPSLVLAPLRVAASTWPDESTKWAHLRNVEV 82 Query: 96264 --VAGTKAERRTAIGRAFRADEPTVLITSYDLLRRDVDDYTANEQRFNVMALDEAQYIKN 96091 V GT +RR A+ R V T+YD L ++ + + F + DE+ +K+ Sbjct: 83 SAVVGTPEQRRAALKRP-----ANVFTTNYDNLPWLIE-HLGDRWPFRKVVADESTKLKS 136 Query: 96090 HTTK-------IXXXXXXXXADHRFALTGTPIENRLSELWSIFDFLMPG--LLGSYKRFH 95938 + D LTGTP N L +LW FL G L S+ F Sbjct: 137 FRLQQGGKRAHALGRVAHAKVDRFIELTGTPSPNGLQDLWGQAWFLDKGERLGRSFGAFK 196 Query: 95937 ERYELPISNARAADGSTAEGRAAAQVNP---EAARVSRQLQSLVGVFIKRRLKSQVLTDL 95767 R+ I R A ++ P ++ +L+ L L ++ D+ Sbjct: 197 SRWFQSI--------QVGSDRHAVRLEPLPFAQQQIEDRLRDLC-----LSLDARDYFDI 243 Query: 95766 PDKLETTLTVRLAGEQRKLYAAHEQRLRMQLEHSEEAD-FN-TSKIRILAELTKLRQICC 95593 + + + V L + R+LY E+ + LE E + FN SK +L Sbjct: 244 SEPIVNVVRVELPAKARRLYRDMEREAFLALECGIEIEAFNAASKTIKCLQLANGAIYTD 303 Query: 95592 DPRLLYADAKDQSAKLAAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTI 95413 D +AD D KL A+ +V G L+ F S L + F QG Sbjct: 304 DTATTWADVHD--VKLQALESIVAEAA--GMPVLVAYHFKSDLARLQRAF-PQG------ 352 Query: 95412 TGSTPKKKRLELVDQFNADDTPAFLISLKAGNTGLNL-TGASVVIHADPWWNAAAQDQAT 95236 + + + +NA P + GLNL G +++ WW+ Q Sbjct: 353 ---RALDQNPQTIRDWNAGKIPLLFAHPASAGHGLNLQDGGNILAFFGHWWDLEQYQQII 409 Query: 95235 D-----RAHRIGQTEDVNVYQVVAKDTIEERILELQHTKSEL 95125 + R + G V +Y +VA DT++E ++ + +K E+ Sbjct: 410 ERIGPTRQAQAGHDRPVFIYHIVATDTMDELVMARRESKREV 451 >ref|YP_024677.1|gp04 Length = 90 Score = 69.7 bits (169), Expect = 6e-11 Identities = 37/88 (42%), Positives = 54/88 (61%) Frame = +3 Query: 14910 NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGR 15089 NKSDL++ +A ++ +TK + A+ A + ++++ G+ + LTG RAARTGR Sbjct: 2 NKSDLINHVAAETGMTKTDSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTGR 61 Query: 15090 NPRTGEQIDIPASYGVRISAGSLLKKAV 15173 NP TGE+I IPAS + AG LK AV Sbjct: 62 NPATGEEIKIPASKAPKFKAGKGLKDAV 89 >ref|NP_803307.1|integrase Length = 401 Score = 66.2 bits (160), Expect = 7e-10 Identities = 79/327 (24%), Positives = 142/327 (43%), Gaps = 40/327 (12%) Frame = +2 Query: 41132 MSFCDYYSQWVDVY-KEGAIREVTMKKYKLTQAWLRKLIPD-LKLSEFDRVSYQKLINGY 41305 ++F +W++ + K + T+ K+ +++ + L L++ D Q IN Sbjct: 70 LTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIKNIKRYCSENLLLNKLDTKYMQIFINKL 129 Query: 41306 AEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKT---------KY 41458 ++ + +KGAI AV P + K P+++KT K Sbjct: 130 SDIYSQNQVTRQLGDMKGAIKYAVK---FYNYPNEYLLTNVKIPKRRKTIEDIEKDESKM 186 Query: 41459 LNQFELHAVLADLKLDPIPNWDWL-----ILLV------AKTGLRFSEALGLTPDDFDFV 41605 N E++ VL D I N + L IL+ A TG+R E L D D + Sbjct: 187 YNYLEMNQVLQIR--DHILNDNKLQKRNRILIASILEVQALTGMRIGELQALQEKDIDLL 244 Query: 41606 HQTLSVNKTWN---YKNGGGFVPT-KNASSVRKVQLDWQLI-MQLSVLLKN--------- 41743 ++T+++ T + Y+ G G+ T K SS R + ++ + + + ++L+N Sbjct: 245 NKTINITGTIHRIKYEKGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKRWNSS 304 Query: 41744 LPDDKPIFVNGK---VYNSTANGILARHCKQAGV-PVISIHGLRHTHASLLLFAGVSIAS 41911 D IF K + N+ G+L + K + ++ H RHTH +LL+ VS+ + Sbjct: 305 YVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKA 364 Query: 41912 VSKRLGHASMNTTQETYLHVIRELENK 41992 + KR+GH TT Y HV +++ + Sbjct: 365 IMKRVGHVDEKTTIRIYTHVTEKMDRE 391 >ref|NP_075464.1|integrase Length = 401 Score = 65.9 bits (159), Expect = 9e-10 Identities = 79/327 (24%), Positives = 142/327 (43%), Gaps = 40/327 (12%) Frame = +2 Query: 41132 MSFCDYYSQWVDVY-KEGAIREVTMKKYKLTQAWLRKLIPD-LKLSEFDRVSYQKLINGY 41305 ++F +W++ + K + T+ K+ +++ + L L++ D Q IN Sbjct: 70 LTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTKYMQIFINKL 129 Query: 41306 AEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKT---------KY 41458 ++ + +KGAI AV P + K P+++KT K Sbjct: 130 SDIYSQNQVTRQLGDMKGAIKYAVK---FYNYPNEYLLTNVKIPKRRKTIEDIEKDESKM 186 Query: 41459 LNQFELHAVLADLKLDPIPNWDWL-----ILLV------AKTGLRFSEALGLTPDDFDFV 41605 N E++ VL D I N + L IL+ A TG+R E L D D + Sbjct: 187 YNYLEMNQVLQIR--DHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKDIDLL 244 Query: 41606 HQTLSVNKTWN---YKNGGGFVPT-KNASSVRKVQLDWQLI-MQLSVLLKN--------- 41743 ++T+++ T + Y+ G G+ T K SS R + ++ + + + ++L+N Sbjct: 245 NKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKRWNSS 304 Query: 41744 LPDDKPIFVNGK---VYNSTANGILARHCKQAGV-PVISIHGLRHTHASLLLFAGVSIAS 41911 D IF K + N+ G+L + K + ++ H RHTH +LL+ VS+ + Sbjct: 305 YVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKA 364 Query: 41912 VSKRLGHASMNTTQETYLHVIRELENK 41992 + KR+GH TT Y HV +++ + Sbjct: 365 IMKRVGHVDEKTTIRIYTHVTEKMDRE 391 >ref|NP_058467.1|integrase Length = 401 Score = 65.9 bits (159), Expect = 9e-10 Identities = 79/327 (24%), Positives = 142/327 (43%), Gaps = 40/327 (12%) Frame = +2 Query: 41132 MSFCDYYSQWVDVY-KEGAIREVTMKKYKLTQAWLRKLIPD-LKLSEFDRVSYQKLINGY 41305 ++F +W++ + K + T+ K+ +++ + L L++ D Q IN Sbjct: 70 LTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTKYMQIFINKL 129 Query: 41306 AEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKT---------KY 41458 ++ + +KGAI AV P + K P+++KT K Sbjct: 130 SDIYSQNQVTRQLGDMKGAIKYAVK---FYNYPNEYLLTNVKIPKRRKTIEDIEKDESKM 186 Query: 41459 LNQFELHAVLADLKLDPIPNWDWL-----ILLV------AKTGLRFSEALGLTPDDFDFV 41605 N E++ VL D I N + L IL+ A TG+R E L D D + Sbjct: 187 YNYLEMNQVLQIR--DHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKDIDLL 244 Query: 41606 HQTLSVNKTWN---YKNGGGFVPT-KNASSVRKVQLDWQLI-MQLSVLLKN--------- 41743 ++T+++ T + Y+ G G+ T K SS R + ++ + + + ++L+N Sbjct: 245 NKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKRWNSS 304 Query: 41744 LPDDKPIFVNGK---VYNSTANGILARHCKQAGV-PVISIHGLRHTHASLLLFAGVSIAS 41911 D IF K + N+ G+L + K + ++ H RHTH +LL+ VS+ + Sbjct: 305 YVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKA 364 Query: 41912 VSKRLGHASMNTTQETYLHVIRELENK 41992 + KR+GH TT Y HV +++ + Sbjct: 365 IMKRVGHVDEKTTIRIYTHVTEKMDRE 391 >ref|NP_958556.1|putative integrase Length = 391 Score = 65.1 bits (157), Expect = 2e-09 Identities = 78/301 (25%), Positives = 128/301 (42%), Gaps = 30/301 (9%) Frame = +2 Query: 41159 WVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLINGYAEHHEHQTTM- 41335 W + YK ++E T K K Q + +IPD D+++ +L +A+ Q Sbjct: 79 WFENYKT-QVKESTANKNK--QVFDNHVIPDFGNQYVDKITVAEL-QKWADRKAKQIVKY 134 Query: 41336 -DFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKTKYLNQF---ELHAVLADLKL 41503 D ++ + + +P ++ II K R ++ N + EL+ L K Sbjct: 135 RDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTREELNQFLEVAKE 194 Query: 41504 DPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNY--KNGGGFVPTKN- 41674 + + + LL A TGLR SEAL LT D D TLS+NKT Y N P K+ Sbjct: 195 YGLVQYTYFKLLSA-TGLRKSEALALTWQDIDLKAGTLSINKTLAYGLDNKTIIQPPKSP 253 Query: 41675 --------ASSVRKVQLDWQLIMQL-----------SVLLKNLPDDKPIFVNGKVYNSTA 41797 + S+++V +D++ ++ + L + PD + K + Sbjct: 254 KSKRILPISDSLKEVLIDYKQKQKIISNKLFHTIKGTYLKMSKPDQWLKSIYAKDHEEKV 313 Query: 41798 NGILARHCK--QAGVPVISIHGLRHTHASLLLF-AGVSIASVSKRLGHASMNTTQETYLH 41968 + K Q + I++HG RHT A+LL+ V +V LGH ++ T + Y H Sbjct: 314 KYAKTHNLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTH 373 Query: 41969 V 41971 V Sbjct: 374 V 374 >ref|NP_958623.1|77ORF007 Length = 401 Score = 65.1 bits (157), Expect = 2e-09 Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 22/172 (12%) Frame = +2 Query: 41543 AKTGLRFSEALGLTPDDFDFVHQTLSVNKTWN-YKNGGGFV---PTKNASSVRKVQLDWQ 41710 A TG+R E L L D D ++T+++N T + K GF TK A S RK+ ++ + Sbjct: 224 ALTGMRIGELLALQVKDVDLKNKTIAINGTIHRIKCNAGFGHKDTTKTAGSRRKIAINSR 283 Query: 41711 LIMQLSVLL---KNLPDDKPIFVN----------GKVYNSTANGILARHCKQAGV-PVIS 41848 + L ++ K + +P +V+ + S N L+ + + ++ Sbjct: 284 IANVLKKIMLENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVT 343 Query: 41849 IHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVI----RELENK 41992 H LRHTH SLL +S+ ++ KR+GH TT + Y HV RELE K Sbjct: 344 THTLRHTHISLLAEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQK 395 >ref|NP_624303.1|integrase fragment Length = 112 Score = 62.8 bits (151), Expect = 8e-09 Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 3/116 (2%) Frame = +2 Query: 41675 ASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFVNGKVYNSTANGILARHCKQAGVPVISIH 41854 A+S R +Q+D +L+ +LK + V +V N +L + K ++ H Sbjct: 1 AASNRVIQIDKRLLD----VLKRYKRVSGLLV--QVTREAINHVLTKDLKHIEAKNVTFH 54 Query: 41855 GLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHV---IRELENKDVDIVMD 42013 LRH+HAS LL GVSI VS+RLGH+++ T+ Y H+ +RE E K + +MD Sbjct: 55 ALRHSHASYLLSKGVSIQYVSERLGHSNVGITENVYSHLLKTLRENEEKKITDLMD 110 >ref|NP_958506.1|putative integrase Length = 391 Score = 61.2 bits (147), Expect = 2e-08 Identities = 79/301 (26%), Positives = 127/301 (42%), Gaps = 30/301 (9%) Frame = +2 Query: 41159 WVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLINGYAEHHEHQTTM- 41335 W + YK ++E T K K Q + +IP D+++ +L +A+ Q Sbjct: 79 WFENYKT-QVKESTANKNK--QVFDNHVIPAFGNQYIDKITVAEL-QKWADRKAKQIVKY 134 Query: 41336 -DFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKTKYLN---QFELHAVLADLKL 41503 D ++ + + +P ++ II K R ++ N Q EL+ L K Sbjct: 135 RDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTQDELNQFLEVAKD 194 Query: 41504 DPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFV--PTKNA 41677 + + + LL A TGLR SEAL LT D + TLSVNKT Y G + P K+ Sbjct: 195 YGLVPYTYFKLLSA-TGLRKSEALALTWSDINLTAGTLSVNKTLAYGLNGKTIIQPPKSP 253 Query: 41678 SSVR---------KVQLDWQLIMQL-----------SVLLKNLPDDKPIFVNGKVYNSTA 41797 S R +V +D++ ++ + L + PD + K + A Sbjct: 254 KSKRILPISDGLKEVLIDYKRKQKIISKELFHTNKGTYLRISKPDQWLKSIYAKDHEEKA 313 Query: 41798 NGILARHCK--QAGVPVISIHGLRHTHASLLLF-AGVSIASVSKRLGHASMNTTQETYLH 41968 + K Q + I++HG RHT A+LL+ V +V LGH ++ T + Y H Sbjct: 314 EYAKKYNLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTH 373 Query: 41969 V 41971 + Sbjct: 374 I 374 >ref|YP_024948.1|gp28 Length = 459 Score = 60.8 bits (146), Expect = 3e-08 Identities = 111/492 (22%), Positives = 178/492 (36%), Gaps = 46/492 (9%) Frame = -3 Query: 96441 MGLGKSVQLIALLLSRYQRNAGEMGDGSLGPSLIVCPASLVYN-WGAEFTKFA--PSFNA 96271 MGLGK+V ++ L + Y M P+L+ P + + W E K+ Sbjct: 5 MGLGKTVSTLSALETNYHFGIETM------PTLVCAPLRVAQSTWPDECEKWEHLSGMEV 58 Query: 96270 VVVAGTKAERRTAIGRAFRADEPTVLITSYDLLRRDVDDYTANEQR--FNVMALDEAQYI 96097 V + G R + R D P I +Y+ L +D + N + F + DE+ + Sbjct: 59 VPIIGDAGRRAMQL----RRDAPVFSI-NYENLPWLIDWFKHNPRPWPFGRVIADESTKL 113 Query: 96096 KN---------HTTKIXXXXXXXXADHRFA------------LTGTPIENRLSELWSIFD 95980 K+ T+ A LTGTP N L +LW Sbjct: 114 KSTRVSNQRSKRGTEFVKKSGGSVRGRALAEVAHTKVHGWVNLTGTPSPNGLQDLWGQQW 173 Query: 95979 FLMPG--LLGSYKRFHERYELPISNARAADGSTAEGRAAAQVNPEAARVSRQLQSLVGVF 95806 F+ G L S+ F ER+ S G Q P A ++L Sbjct: 174 FVDGGQRLGRSFSAFEERW----------FQSVPGGNGYRQTRPLAHAQDEIQKALADCT 223 Query: 95805 IKRRLKSQVLTDLPDKLETTLTVRLAGEQRKLYAAHEQRLRMQLEHSEEADFNTSKIRIL 95626 I L DL + + + V L R+LY E+++ M+++ S N + Sbjct: 224 IS--LDPADWFDLDEPIVRPVYVELPAAARRLYRDMERQMFMEIDDSPIEAMNAA----- 276 Query: 95625 AELTKLRQICCDPRLLYADAKDQSA--------KLAAITELVETCVNEGKKALIFSQFTS 95470 ++ K Q+ D +A KL A+ E+VE G L+ F S Sbjct: 277 SKTMKCLQLANGAVYKQEDDGSDTAPWHEVHDLKLQALEEIVEEAA--GMPVLVAYHFKS 334 Query: 95469 FLDLIAERFDAQGLRYYTITGSTPKKKRL----ELVDQFNADDTPAFLISLKAGNTGLNL 95302 L + F P+ ++L + + +NA P + GLNL Sbjct: 335 DLARLQRAF--------------PRGRQLDQNPQTIRDWNAGKIPVMFAHPASAGHGLNL 380 Query: 95301 -TGASVVIHADPWWNAAAQDQATDRAHRI-----GQTEDVNVYQVVAKDTIEERILELQH 95140 G +++ WWN Q +R + G V +Y ++A+DTI+E ++E + Sbjct: 381 QDGGNILAVFGHWWNLEEYLQIVERIGPVRQLQAGHRRPVFIYPIIARDTIDEDVVERRE 440 Query: 95139 TKSELARQFTDA 95104 TK + DA Sbjct: 441 TKRAVQDILLDA 452 >ref|NP_076801.1|integrase Length = 382 Score = 60.5 bits (145), Expect = 4e-08 Identities = 85/329 (25%), Positives = 148/329 (44%), Gaps = 31/329 (9%) Frame = +2 Query: 41114 NTINEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIP-DLKLSEFDRVSYQK 41290 N+ F D +W YK+ +I++ ++ + + ++ ++K+S QK Sbjct: 57 NSSTSNAKFTDIAEEWWSFYKK-SIKQSSISALQSSFNFIIDYFDKEIKISNVTSKVIQK 115 Query: 41291 LINGYAEHHEHQTTMDFHHQLKGAILD-AVDEGLIQRDPTRKAIIKGKQPRQK-----KT 41452 IN + ++ ++ I D AVD I+ +P RKA + K K + Sbjct: 116 FIN---DADCPRSKLERSKSTLNLIFDYAVDLEYIEYNPARKAKLPKKIQTVKDLEKIQN 172 Query: 41453 KYLNQFELHAVLADLKLDPIPNWDWLILL---VAKTGLRFSEALGLTPDDFDFVHQTLSV 41623 KYL Q EL A+L++L P N L LL ++ G R EA+ L +++ + + + Sbjct: 173 KYLEQNELKALLSELYSRP--NTRRLALLAEFMSLNGCRMGEAIALKKENYKRSERKIDI 230 Query: 41624 N----KTWNYKNGGGFVPTKNASSVRKVQL-DWQL-----IMQLSVLLKNLPDDKP---- 41761 + KT Y G P K ASS R V L D ++ I++ + L K++ +D Sbjct: 231 HGTLDKTVGYSKGVKTTP-KTASSFRTVDLSDREIEILDEIIEQNNLSKSVINDYNEMGY 289 Query: 41762 IFVNGK---VYNSTANGILARHCKQAGVPV---ISIHGLRHTHASLLLFAGVSIASVSKR 41923 IFV+ + + ++ N + R + P+ +S H RHT S L V + ++ R Sbjct: 290 IFVSKRGIPLQTNSFNLAIKRANSRLKSPINKNLSSHIFRHTLISYLAENNVPLKAIVDR 349 Query: 41924 LGHA-SMNTTQETYLHVIRELENKDVDIV 42007 +GH TT Y HV +++ +DI+ Sbjct: 350 VGHKDGGKTTTAIYTHVTENMKSSIIDIL 378 >ref|NP_795489.1|putative integrase Length = 380 Score = 60.1 bits (144), Expect = 5e-08 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 29/241 (12%) Frame = +2 Query: 41372 AVDEGLIQRDPTRKAIIKGKQPRQKKT---------KYLNQFELHAVLADLKLDPIP-NW 41521 AV +IQ +P R+A K PR KKT KYL + E+ +L +L P Sbjct: 141 AVGLDIIQDNPARRA----KLPRVKKTLEDWKKAEEKYLEEDEIKPLLKELYRRPSTYRL 196 Query: 41522 DWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWN----YKNGGGFVPTKNASSVR 41689 L ++ G R EA+ + P +++ + L ++ T++ Y+NG P AS Sbjct: 197 GLLAEFISLNGCRIGEAVSIEPCNYESKSRILQLHGTFDHTEGYRNGEKTAPKTLASYRE 256 Query: 41690 KVQLDWQL-IMQ----LSVLLKNLP----DDKPIFV--NG-KVYNSTANGILARHCKQAG 41833 + +L I+Q ++ L KN D +F NG + ++ N L + ++ Sbjct: 257 TIMTSRELEILQELEFMNELEKNTNHRYRDMGYLFTTKNGVPIQTNSFNLALKKANERLE 316 Query: 41834 VPV---ISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRELENKDVDI 42004 P+ ++ H RHT S L V + S+ +R+GHA TT + Y HV +++++ DI Sbjct: 317 DPITKKLTSHIFRHTLISRLAENNVPLKSIMERVGHADAKTTAQIYTHVTKKMKSSVADI 376 Query: 42005 V 42007 + Sbjct: 377 M 377 >ref|NP_051002.1|hypothetical protein Length = 460 Score = 58.9 bits (141), Expect = 1e-07 Identities = 110/487 (22%), Positives = 192/487 (39%), Gaps = 25/487 (5%) Frame = -3 Query: 96519 RPYQVEGFQWLNTLCDKGFGGILADEMGLGKSVQLIALLLSRYQRNAGEMGDGSLGPSLI 96340 RPYQ +N L D + A MG+GK+ + L + Y + P+L+ Sbjct: 7 RPYQ---HLIINHLLDIKRSNVWAG-MGMGKTAATLTALENLY------LSGSETKPTLV 56 Query: 96339 VCPASLVYN-WGAEFTKFAPSFNAVV--VAGTKAERRTAIGRAFRADEPTVLITSYDLLR 96169 + P + + W E K++ N V + G+ R A+ + +V +YD L Sbjct: 57 LAPLRVAQSTWPDEALKWSHLRNIEVQPIIGSAKARIAAL----KNTHASVFTVNYDNLV 112 Query: 96168 RDVDDYTANEQRFNVMALDEAQYIKNHTTKIXXXXXXXXAD------HRFA-LTGTPIEN 96010 VD + F + DE+ +K+ + A HR+ LTGTP N Sbjct: 113 WLVD-ILGDTWPFGTIIADESTRLKSFRLRKGGKRTAALAKIAHKSVHRWVNLTGTPSPN 171 Query: 96009 RLSELWSIFDFLMPG--LLGSYKRFHERYELPISNARAADGSTAEGRAAAQVNPEAARVS 95836 L +LW F+ G L +Y F R+ I G+ ++ P Sbjct: 172 GLMDLWGQAWFVDQGERLGRTYNAFTSRWFKRIQ---------LPGQQWSRFEPLGFAHL 222 Query: 95835 RQLQSLVGVFIKRRLKSQVLTDLPDKLETTLTVRLAGEQRKLYAAHEQRLRMQLEHSEEA 95656 + +L V + L + D+ + + + V L + R Y A E+ L ++L S Sbjct: 223 QIPLALSDVTLS--LDAADWFDIDEPIHNVINVELPAKARAHYHAMEKELFLELGESAIE 280 Query: 95655 DFNTSKIRILAELTKLRQICCDPRLLYADAKDQSAKL-AAITELVETCVNE--GKKALIF 95485 N + A+ K+ QI +Y+D ++ A + +E+ VNE G L+ Sbjct: 281 ALNAA-----AKTIKILQIASG--AIYSDDNRNWTEIHDAKIQALESIVNESGGTPVLVA 333 Query: 95484 SQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLE----LVDQFNADDTPAFLISLKAGN 95317 + L+ + + F PK K L+ + +N P + Sbjct: 334 YHWKHDLERLLKAF--------------PKGKNLDANPRTLTDWNNGKIPLLFAHPASCG 379 Query: 95316 TGLNL-TGASVVIHADPWWNAAAQDQATD-----RAHRIGQTEDVNVYQVVAKDTIEERI 95155 GLNL G ++++ WW+ Q + R + G V ++ +VAKDT++E + Sbjct: 380 HGLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVV 439 Query: 95154 LELQHTK 95134 +E +++K Sbjct: 440 MERRNSK 446 >ref|NP_510895.1|similar to phage phi 11 integrase Length = 349 Score = 57.0 bits (136), Expect = 4e-07 Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 7/197 (3%) Frame = +2 Query: 41435 PRQK-KTKYLNQFELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQ 41611 PR K K K++ + E + D++ ++ L L+ TGLR EA+ L D++ + Sbjct: 155 PRVKPKPKFMMREEFEKRIKDIEEQ---DYRELFTLMFYTGLRIGEAMALVWTDYNKYKK 211 Query: 41612 TLSVNKTWNYKNGGGFVPTKNASSVRKVQLDWQLIMQLSVL------LKNLPDDKPIFVN 41773 +S+NKT + N + K SS V L + L+ L D++ F+ Sbjct: 212 EISINKTMDISNRTIYPRPKTDSSEDIVPLPKFINTMLTERHQREKELNKYFDERSYFIF 271 Query: 41774 GKVYNSTANGILARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQ 41953 G + + + + Q P +IH LRH++AS L GV I + + HA + T Sbjct: 272 GGMAPKHYSHVQKKF--QKAFPHYNIHALRHSYASYLANNGVDIFVLQSLMRHAQITETM 329 Query: 41954 ETYLHVIRELENKDVDI 42004 TY H+ + ++ + I Sbjct: 330 GTYSHLYTQKKHDAIAI 346 >ref|NP_777346.1|hypothetical protein Length = 395 Score = 56.6 bits (135), Expect = 6e-07 Identities = 73/298 (24%), Positives = 122/298 (40%), Gaps = 19/298 (6%) Frame = +2 Query: 41144 DYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIP--DLKLSEFDRVSYQKL---INGYA 41308 DY + W++ A R++ + +L+ + P L LS ++++ + G++ Sbjct: 73 DYLASWIE--HRAATRDLRPTTLRNYHVYLKHVEPIAHLPLSRLTPLTFRAFFAELAGFS 130 Query: 41309 EHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKTKYLNQFELHAVL 41488 H + L+ A+ DA+ L+ ++P PR + ++ V Sbjct: 131 PSHRRH----IYQFLRAALRDAMRADLLDQNPMDAV----DPPRGGAVRPAKAWKPEEVA 182 Query: 41489 ADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPT 41668 L+ L L+ T LR EAL L +D++ L V T + G P Sbjct: 183 RFLEASKGHRLYPLFALMLATRLRPGEALALRWEDWE--GDVLHVRHT--LRRDGTLGPA 238 Query: 41669 KNASSVRKVQLDWQLIMQLSVLLKNLPDDKP----------IFVNGK----VYNSTANGI 41806 K SV + LD L+ + L ++K +F + K YN+ Sbjct: 239 KTPGSVAPIYLDPDTQALLAWWRERLEEEKASTPDWQDHGLMFPSSKGTPLEYNNFKRAF 298 Query: 41807 LARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRE 41980 A ++AGV I+ HGLRHT+ SL L AG+ V+ RL HA T + Y ++ E Sbjct: 299 YALQ-EKAGVSRITPHGLRHTYTSLALRAGLPPKVVAARLRHADPTFTVKVYQQLMEE 355 >ref|NP_050109.1|integrase Length = 385 Score = 53.1 bits (126), Expect = 6e-06 Identities = 60/261 (22%), Positives = 100/261 (38%), Gaps = 23/261 (8%) Frame = +2 Query: 41303 YAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKTK-----YLNQ 41467 Y + + T +H A+ G +++P K I K R KK YL Sbjct: 128 YKDELSNATAHKYHVVFTKLFDFAIQFGYARKNPALKVKINFKNERAKKQDRIENWYLTD 187 Query: 41468 FELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKN 41647 EL + ++ L ++ TG+R E GL + +T K W Sbjct: 188 KELSKLFNHCLEKKRNDFYALFKMLYLTGMRLGEGCGLLVKNIFQNKET----KLWYVNI 243 Query: 41648 GGGFVPT-----------KNASSVRKVQLDWQLIMQLSVLLKNLPDDKPIF------VNG 41776 G + T K +SS R + L + ++ K + +F NG Sbjct: 244 SGTLISTEGHRNERQEFTKTSSSQRTIVLPKEAVVIYKEFSKGQNSNDFLFHNKYSNTNG 303 Query: 41777 KVYNSTANGILARHC-KQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQ 41953 + S + L +Q + H RHTH S L G ++ ++ R+GHA+ + T+ Sbjct: 304 PINTSAVSRFLREFVNEQKWKKKATSHIFRHTHVSKLAEEGYPLSLITDRVGHANSDITR 363 Query: 41954 ETYLHVIRELENKDVDIVMDN 42016 + YLHV + ++ + D M N Sbjct: 364 KIYLHVTHK-QHLEFDEAMQN 383 >ref|YP_024988.1|superfamily II DNA Length = 489 Score = 52.0 bits (123), Expect = 1e-05 Identities = 105/463 (22%), Positives = 183/463 (39%), Gaps = 22/463 (4%) Frame = -3 Query: 96444 EMGLGKSVQLIALLLSRYQRNAGEMGDGSLGPSLIVCPASLVYNWGAEFTKFAPSFNAVV 96265 EMG GK+ IAL R+ + DG L ++ P V+ W PS V Sbjct: 39 EMGTGKTFTTIALAGHRFNQR---QIDGVL--VIVPTPIKPVWEWEVRDMSPVPSIAHVH 93 Query: 96264 VAGTKAERRTAIGRAFRADEPTVLITSYDLLRRDVDDYTANE--QRFNVMAL-DEAQYIK 96094 +G E I + D+ L+ + L + A ++ N + + DE+ IK Sbjct: 94 DSGGDKETMRFI-ESEHEDKLKYLVIGVEALSQGKAHELALAFVRKHNALVVVDESSRIK 152 Query: 96093 N----HTTKIXXXXXXXXADHRFALTGTPIENRLSELWSIFDFLMPGLLGSYKRFHERYE 95926 N T K +R LTGTPI + +L+ F FL ++G F R Sbjct: 153 NADAARTKKAIRCGDSAA--YRMILTGTPITQGIIDLFGQFRFLGEHIIGLKSFFVFRNM 210 Query: 95925 LPISNARAADGSTAEGRAAAQVNPEAARVSRQLQSLVGVFIKRRLKSQVLTDLPDKLETT 95746 I +G+ E +L + ++ + K++ L DLP+K+ + Sbjct: 211 YCIMGG-------FQGKKVLGYQRE-----EELMDKIAPYVYQVKKTECL-DLPEKVYRS 257 Query: 95745 LTVRLAGEQRKLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQIC------CDPR 95584 +TV EQ L A E L+ E ++ D T +L +T+ +QI D Sbjct: 258 ITVSPTKEQ--LSAMKE--LKDFFETEQDGDVLTVS-TVLDRMTRFQQILGGNFPFLDKD 312 Query: 95583 LLYADAKDQSAKLAAITELVETC--VNEGKKALIFSQFTSFLDLIAERF-----DAQGLR 95425 Y D K S + ++E ++ K +I+++F + ++ I++R D + Sbjct: 313 GAY-DVKPISGPNPKMDAMLEDIADLDRNAKVIIWARFRAEIEQISKRLREVYGDDSVIE 371 Query: 95424 YYTITGSTPKKKRLELVDQFNADDTPA--FLISLKAGNTGLNLTGASVVIHADPWWNAAA 95251 Y+ G + R + +F P+ F+ + + G+ LT A+ + ++ Sbjct: 372 YH---GGISESDRKASIPRFQDSSDPSRFFVANQQTAGMGITLTIATFAYYYSNSFSLEQ 428 Query: 95250 QDQATDRAHRIGQTEDVNVYQVVAKDTIEERILELQHTKSELA 95122 + Q+ DR HR GQ + K + + +K +LA Sbjct: 429 RLQSEDRNHRKGQRNVCTYIDIWCKADADLMVGRALKSKKDLA 471 >ref|YP_024431.1|superfamily II DNA Length = 472 Score = 52.0 bits (123), Expect = 1e-05 Identities = 105/463 (22%), Positives = 183/463 (39%), Gaps = 22/463 (4%) Frame = -3 Query: 96444 EMGLGKSVQLIALLLSRYQRNAGEMGDGSLGPSLIVCPASLVYNWGAEFTKFAPSFNAVV 96265 EMG GK+ IAL R+ + DG L ++ P V+ W PS V Sbjct: 22 EMGTGKTFTTIALAGHRFNQR---QIDGVL--VIVPTPIKPVWEWEVRDMSPVPSIAHVH 76 Query: 96264 VAGTKAERRTAIGRAFRADEPTVLITSYDLLRRDVDDYTANE--QRFNVMAL-DEAQYIK 96094 +G E I + D+ L+ + L + A ++ N + + DE+ IK Sbjct: 77 DSGGDKETMRFI-ESEHEDKLKYLVIGVEALSQGKAHELALAFVRKHNALVVVDESSRIK 135 Query: 96093 N----HTTKIXXXXXXXXADHRFALTGTPIENRLSELWSIFDFLMPGLLGSYKRFHERYE 95926 N T K +R LTGTPI + +L+ F FL ++G F R Sbjct: 136 NADAARTKKAIRCGDSAA--YRMILTGTPITQGIIDLFGQFRFLGEHIIGLKSFFVFRNM 193 Query: 95925 LPISNARAADGSTAEGRAAAQVNPEAARVSRQLQSLVGVFIKRRLKSQVLTDLPDKLETT 95746 I +G+ E +L + ++ + K++ L DLP+K+ + Sbjct: 194 YCIMGG-------FQGKKVLGYQRE-----EELMDKIAPYVYQVKKTECL-DLPEKVYRS 240 Query: 95745 LTVRLAGEQRKLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQIC------CDPR 95584 +TV EQ L A E L+ E ++ D T +L +T+ +QI D Sbjct: 241 ITVSPTKEQ--LSAMKE--LKDFFETEQDGDVLTVS-TVLDRMTRFQQILGGNFPFLDKD 295 Query: 95583 LLYADAKDQSAKLAAITELVETC--VNEGKKALIFSQFTSFLDLIAERF-----DAQGLR 95425 Y D K S + ++E ++ K +I+++F + ++ I++R D + Sbjct: 296 GAY-DVKPISGPNPKMDAMLEDIADLDRNAKVIIWARFRAEIEQISKRLREVYGDDSVIE 354 Query: 95424 YYTITGSTPKKKRLELVDQFNADDTPA--FLISLKAGNTGLNLTGASVVIHADPWWNAAA 95251 Y+ G + R + +F P+ F+ + + G+ LT A+ + ++ Sbjct: 355 YH---GGISESDRKASIPRFQDSSDPSRFFVANQQTAGMGITLTIATFAYYYSNSFSLEQ 411 Query: 95250 QDQATDRAHRIGQTEDVNVYQVVAKDTIEERILELQHTKSELA 95122 + Q+ DR HR GQ + K + + +K +LA Sbjct: 412 RLQSEDRNHRKGQRNVCTYIDIWCKADADLMVGRALKSKKDLA 454 >ref|NP_817947.1|gp96 Length = 566 Score = 51.2 bits (121), Expect = 2e-05 Identities = 57/193 (29%), Positives = 84/193 (43%), Gaps = 6/193 (3%) Frame = -2 Query: 20653 FADIGGLDS-EIGRIRDAVQLPFQHRALFERYDLKPPKGVLLYGPPGNGKTMIAKAVANA 20477 F ++GGLD + IR + + RA Y+LK PKG +L G G GKT+ +A+ Sbjct: 281 FDNVGGLDVFKEWAIRQKIAYSPEARA----YNLKLPKGAMLIGVSGCGKTLSCQALG-- 334 Query: 20476 LCEGGYDSNGDGAISPAETHVKGVFLSVKGPELLNKYVGESERLIRLIFQRARERAADGN 20297 AE + V L + L KYVGESE +R IF + Sbjct: 335 ----------------AEWNWPVVRLDINA--LKGKYVGESESRLRGIFSKIDAL----G 372 Query: 20296 PVVVFIDEMDSLLR-----TRGSGVSSDVETTIVPQFLSELDGVESLDNVMVIGASNRVD 20132 V+V+IDE++ L + GVS+D I+ ++ + G V+ +N Sbjct: 373 QVIVYIDEVEKALEGAVSGSADGGVSADALGAIL-TWMQDRAG-----QAFVMMTANDPS 426 Query: 20131 MIDPAVLRPGRLD 20093 + P LR GR D Sbjct: 427 KLPPEFLRKGRFD 439 >ref|NP_061531.1|integrase Length = 369 Score = 49.7 bits (117), Expect = 7e-05 Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 5/207 (2%) Frame = +2 Query: 41420 IKGKQPRQK--KTKYLNQFELHAVLADLKLDPI-PNWDWLILLVAKTGLRFSEALGLTPD 41590 +KG++ R+ + ++L + E+ A+ + P + I L TG R E LGL Sbjct: 148 VKGRKMREAEGRDRWLTRAEVEALCRAARGQKFGPMLEDFIRLAVNTGCRREEMLGLEWR 207 Query: 41591 DFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFV 41770 DF ++ + + + +P + L +++ + P+ +F Sbjct: 208 RVDFANRLIYLEASHTKAGKRRSIPINEGAMAA-------LKRRMAFRSETSPECPWVFA 260 Query: 41771 --NGKVYNSTANGILARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMN 41944 NG S + G + C+ A + +IH LRHT A+ L+ AGV +A V LGH+++ Sbjct: 261 RANGDRVISLSAGF-KQACQAAKIADFTIHDLRHTCAAWLVSAGVPLADVRDLLGHSTVA 319 Query: 41945 TTQETYLHVIRELENKDVDIVMDNARD 42025 T E Y H + +D V+D R+ Sbjct: 320 MT-ERYAH-LAPARVRDAVGVLDQVRE 344 >ref|NP_803254.1|integrase Length = 348 Score = 48.5 bits (114), Expect = 2e-04 Identities = 53/202 (26%), Positives = 95/202 (47%), Gaps = 12/202 (5%) Frame = +2 Query: 41435 PRQK-KTKYLNQFELHAVLADLKLDPIPNWD--WLILLVAKTGLRFSEALGLTPDDFDFV 41605 PR K + K++ + E D K++ I N L L+ +GLR EAL L D+D + Sbjct: 156 PRTKPQAKFITREEF-----DEKVEQITNDTSRQLTRLLFYSGLRIGEALALQWKDYDKI 210 Query: 41606 HQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDWQLIMQLSVLLKNLPD---------DK 41758 + VNK N N K SS + + LI ++ LKN+ + D+ Sbjct: 211 KGEIDVNKKINLSNRKIEYNLKKESSKGIIPVP-NLIREM---LKNMYNESSKRYKYFDE 266 Query: 41759 PIFVNGKVYNSTANGILARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHAS 41938 F+ G + + + ++ P + IH LRH++AS L+ GV + + + + H++ Sbjct: 267 NYFIFGGL--EPIRYVTYSYHFKSVFPNLKIHHLRHSYASYLINNGVDMYLLMELMRHSN 324 Query: 41939 MNTTQETYLHVIRELENKDVDI 42004 + T +TY H+ + +++ + I Sbjct: 325 ITETIQTYSHLYTDKKHQAMSI 346 >ref|NP_818230.1|gp179 Length = 620 Score = 47.4 bits (111), Expect = 3e-04 Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 12/170 (7%) Frame = -3 Query: 95556 SAKLAAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLEL 95377 SAK+ + + +E+ KA++F +TS L + + TG T ++ + Sbjct: 444 SAKIEMLNDRLESIRESQDKAIVFCHWTSMGILPLQHHLKVPYVLHYGTGQTARESQAAQ 503 Query: 95376 VDQFNADDTPAFLISLKAGNTGLNLTGASVVIHADPWWNAAAQDQATDRAHRIGQTED-- 95203 D+F AD ++ AG+ GLN+ A VI+ DP + + D T R RI + + Sbjct: 504 -DRFKADPDLTCFLTSDAGSHGLNMQEARYVINTDPLY---SYDDLTQRNARIDRADSHL 559 Query: 95202 --VNVYQVVAKDT-IEERILELQHTKSELA-------RQFTDASLLADEA 95083 + Y ++ +++ +E RI ++ + +LA + T A + A+E+ Sbjct: 560 DGLTAYVMITEESKVENRIWQVCEQRRQLAEAVQGTREELTTAEVTAEES 609 >ref|NP_818386.1|gp85 Length = 424 Score = 47.0 bits (110), Expect = 5e-04 Identities = 67/287 (23%), Positives = 110/287 (38%), Gaps = 33/287 (11%) Frame = +2 Query: 41249 DLKLSEFDRVSYQKLINGYAEHHEHQT----------TMDFHHQLKGAILDAVDEGLIQR 41398 D + D S Q +N + E++T T+ H + G + A+ I + Sbjct: 142 DTPIRNIDHESLQDWVNELSTTGEYRTKGEGGFSASRTIQIHLVVNGVMKYALRTDRILK 201 Query: 41399 DPTRKAIIKGKQPRQKKTKYLNQFELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALG 41578 +P + K+ + + +YL +L A++ ++ L LL+ G R SEA G Sbjct: 202 NPAEGLELPTKR-KNTRQRYLTHKQLQEFAAEMG-----RFEGLTLLLGYCGARTSEAFG 255 Query: 41579 LTPDDFDFVHQTLSVNKTWNY-----KNGGGFVPTKNASSVRKVQLDWQLI-MQLSVLLK 41740 DF + W +N T A + + W I M + Sbjct: 256 ARGRDFR--------GRIWELYGAIVRNVEKDTKTHRARFIPIPDVVWNKIQMPANPDAL 307 Query: 41741 NLPDDKPIFVNGKVYNSTANGIL-----------ARHCKQAG------VPVISIHGLRHT 41869 P + NG+ Y +G L A + G P I+ H LRHT Sbjct: 308 VFPGRRGHITNGE-YRWAFDGALRTMQERTEKLRAEEIAETGRATTPAFPRITPHDLRHT 366 Query: 41870 HASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRELENKDVDIVM 42010 ASL + +G ++ +V LGHA+ T + Y H++ + D+D VM Sbjct: 367 CASLAISSGANVKAVQNLLGHATAVMTLDLYGHLLSD----DLDRVM 409 >ref|NP_795605.1|putative phage integrase Length = 388 Score = 46.2 bits (108), Expect = 8e-04 Identities = 65/317 (20%), Positives = 129/317 (40%), Gaps = 30/317 (9%) Frame = +2 Query: 41123 NEEMSFCDYYSQWVDVYKEGAI--REVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLI 41296 N+ ++ +Y+ +VD + + + +++ + + + + K++ +R+ Y+ I Sbjct: 67 NKNLTVDEYWDIYVDNRLKAGVWSPDTYVERTNIFKNHISPKFGNKKMNAINRIEYENYI 126 Query: 41297 NGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQ-KKTKYLNQFE 41473 N + T + + AV ++ + + I + + K + + +F+ Sbjct: 127 NNLLNTNSRSTVKHIYDVFSIMLNHAVKNKMLDDNIIKFIDIGDSEIKPINKRRSMQEFK 186 Query: 41474 LHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGL-----TPDDFDFVHQTLSVNKTWN 41638 +A LD ++D+ ++ + GLR SE G+ T +D D + ++T Sbjct: 187 AWDKVARKMLD---DYDYAMVRITYLGLRRSEVAGIKLGNITFNDKDCAVVKIDESRTRG 243 Query: 41639 YKNGGGFVPTKNASSVRKVQLDWQLIMQLSVLLKN-------------------LPDD-- 41755 K+GGG K A S R V LD++ L + L DD Sbjct: 244 RKDGGGL---KTAYSERYVYLDFETSQLLKKAIDTSIKIAVCNDRILNKADFLFLGDDEK 300 Query: 41756 -KPIFVNGKVYNSTANGILARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGH 41932 KP FV + + + + K V + H +RH A+ AGV I ++ LGH Sbjct: 301 VKPSFVGKPIGSHYIYCLFKKINKNCDVH-FTPHMMRHFFATQGQIAGVPIEHMAAALGH 359 Query: 41933 ASMNTTQETYLHVIREL 41983 ++ T + Y H+ E+ Sbjct: 360 SNNYMTSQ-YTHIKDEV 375 >ref|NP_817718.1|gp41 Length = 400 Score = 45.4 bits (106), Expect = 0.001 Identities = 50/182 (27%), Positives = 76/182 (41%), Gaps = 15/182 (8%) Frame = +2 Query: 41540 VAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPT-KNASSVRKVQLDWQLI 41716 +A G R +E GL D D +T++V T + T K+ +S R++ L L Sbjct: 218 LALAGFRLAEISGLRWCDVDLDARTVTVQNTRLQRGKKRIEKTPKSRASRRELPLPDDLF 277 Query: 41717 MQLSVLLKNLPDDKP-----------IFVNGKVYNSTANGI---LARHCKQAGVPVISIH 41854 K D+ + VN T N I AR K AG+ + +H Sbjct: 278 AAFKAARKIQAADQLRLGEAYEASGYVVVNEAGTPLTPNAIENRWARVLKAAGLRHVRLH 337 Query: 41855 GLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRELENKDVDIVMDNARDFAQ 42034 RHT +L+ GV A +S LGHAS T +TY+ N + ++ A+ F + Sbjct: 338 DARHTCGTLMHLRGVPTALISAWLGHASKAFTLQTYV-------NPKPESLVIAAQSFTR 390 Query: 42035 IG 42040 +G Sbjct: 391 VG 392 >ref|NP_817551.1|gp102 Length = 146 Score = 43.9 bits (102), Expect = 0.004 Identities = 28/112 (25%), Positives = 49/112 (43%) Frame = -1 Query: 108437 VTVTGFVAGDPTLGGTESFRVLTFRMGSTRSRLNPTTRQWEDYGTAWVGVKAFRALAVNA 108258 V + G + DP L T+ + + + R W D ++ +R A N Sbjct: 7 VHLVGTLTADPELRFTQGGQAVANFTVVSNERRRDAQGNWVDGDATFLRCTIWRDAAENV 66 Query: 108257 ASSVRRGDRIIVVGSLITEQWTNEQGEPRSRTVLEATNIGHDLTFGTTSLIK 108102 A S+++G R+IV G L + ++G+ R+ +E IG L + T + K Sbjct: 67 AESLQKGQRVIVHGYLKQRSFETKEGDKRTVIEVEVDEIGPSLRWATARVSK 118 >ref|NP_818251.1|gp200 Length = 113 Score = 43.5 bits (101), Expect = 0.005 Identities = 20/42 (47%), Positives = 28/42 (66%) Frame = -3 Query: 132075 GPGGQSVNTTYSAVRMTHLPTGITVNMQDEKSQIQNRAAALR 131950 G GGQ+ NT +AVR+ H P+G Q+E+SQ+QN+ A R Sbjct: 18 GNGGQNRNTRDTAVRIVHPPSGAVGESQEERSQLQNKKTAFR 59 >ref|NP_059584.1|Int Length = 387 Score = 43.5 bits (101), Expect = 0.005 Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 5/190 (2%) Frame = +2 Query: 41417 IIKGKQPRQKKTKYLNQFELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDF 41596 IIK QP+ K+ ++L E ++ + + +P+ + ++ TGLR S + L Sbjct: 172 IIKVPQPKNKRIRWLEPHEAKRLIDECQ-EPLKS---VVEFALSTGLRRSNIINLEWQQI 227 Query: 41597 DFVHQTLSVNKTWNYKNGG-GFVPTKNASSVRKVQLD----WQLIMQLSVLLKNLPDDKP 41761 D + ++ + N G A V K Q+ W + + S PD Sbjct: 228 DMQRKVAWIHPEQSKSNHAIGVALNDTACRVLKKQIGNHHKWVFVYKES---STKPDGTK 284 Query: 41762 IFVNGKVYNSTANGILARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASM 41941 V K+ AN K+AG+ H LRHT AS L+ AGV I+ + + G S+ Sbjct: 285 SPVVRKM-RYDANTAWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESI 343 Query: 41942 NTTQETYLHV 41971 + Y H+ Sbjct: 344 EMVRR-YAHL 352 >ref|NP_720278.1|Int Length = 387 Score = 42.7 bits (99), Expect = 0.008 Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 5/190 (2%) Frame = +2 Query: 41417 IIKGKQPRQKKTKYLNQFELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDF 41596 IIK QP+ K+ ++L E ++ + +P+ + ++ TGLR S + L Sbjct: 172 IIKVPQPKNKRIRWLEPHEAKRLIDECP-EPLKS---VVEFALSTGLRRSNIINLEWQQI 227 Query: 41597 DFVHQTLSVNKTWNYKNGG-GFVPTKNASSVRKVQLD----WQLIMQLSVLLKNLPDDKP 41761 D + ++ + N G A V K Q+ W + + S PD Sbjct: 228 DMQRKVAWIHPEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKES---STKPDGTK 284 Query: 41762 IFVNGKVYNSTANGILARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASM 41941 V K+ AN K+AG+ H LRHT AS L+ AGV I+ + + G S+ Sbjct: 285 SPVVRKM-RYDANTAWRSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESI 343 Query: 41942 NTTQETYLHV 41971 + Y H+ Sbjct: 344 EMVRR-YAHL 352 >ref|NP_862865.1|gp26 Length = 113 Score = 42.4 bits (98), Expect = 0.011 Identities = 19/66 (28%), Positives = 33/66 (50%) Frame = -1 Query: 116732 MEKVRESDLRRLEAIQRQNGQCLYCGRTITFRTCEMDHIVPRKGVGSTNTRTNFAAVCAE 116553 M++ S R + + + G C YCG+ + +T +DH+ P G ++ N+ C + Sbjct: 1 MKRKSISKAMRQKVLDKYGGHCAYCGKILDLKTLRVDHLHPHYR-GGEDSFENYMPACYQ 59 Query: 116552 CNRMKS 116535 CN KS Sbjct: 60 CNFYKS 65 >ref|YP_006360.1|Int Length = 387 Score = 42.0 bits (97), Expect = 0.014 Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 5/190 (2%) Frame = +2 Query: 41417 IIKGKQPRQKKTKYLNQFELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDF 41596 IIK QP+ K+ ++L E ++ + +P+ + ++ TGLR S + + Sbjct: 172 IIKVPQPKNKRIRWLEPHEAKRLIDECP-EPLKS---VVEFALSTGLRRSNIINMDWQQI 227 Query: 41597 DFVHQTLSVNKTWNYKNGG-GFVPTKNASSVRKVQLD----WQLIMQLSVLLKNLPDDKP 41761 D + ++ + N G A V K Q+ W + + S PD Sbjct: 228 DMQRKVAWIHPEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKES---STKPDGTK 284 Query: 41762 IFVNGKVYNSTANGILARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASM 41941 V K+ AN K+AG+ H LRHT AS L+ AGV I+ + + G S+ Sbjct: 285 SPVVRKM-RYDANTAWRSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESI 343 Query: 41942 NTTQETYLHV 41971 + Y H+ Sbjct: 344 EMVRR-YAHL 352 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 41.6 bits (96), Expect = 0.019 Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 9/101 (8%) Frame = -1 Query: 58100 RIRPHPALPGRRLLPHHPHQDDQLSRHARRARHQGRLRPRL----HTRSRAGRPGPRIRS 57933 R R P PG R+ P +D + +R RR + R++PRL H R A R G R+R Sbjct: 138 RTRAVPLGPGARV--RTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRV 195 Query: 57932 R-----GNRQERRRCPHVPGPAGSRGIRGLRPRHPRHARQA 57825 R G + RR PH P R +R R RH R+A Sbjct: 196 RARPGPGAARRPRRRPH---PEHPRAVRPRRRTGRRHRRRA 233 Score = 39.3 bits (90), Expect = 0.094 Identities = 58/209 (27%), Positives = 70/209 (33%), Gaps = 17/209 (8%) Frame = +2 Query: 90869 PAPRSGPHVRRHSS-GAHAYP-LWPHRSRGQESEPHGLHPAR------VRRTSRHPDQYG 91024 PAPR+ H R H +P L P R R + P HP R RHP Sbjct: 19 PAPRTRAHPRAHRRVRTRPHPHLGPARDRSPD-HPEPDHPCRRAPSRPAAGPRRHPPV-- 75 Query: 91025 RC*SRRRTRHSAP---PQPANRCV*ARQSQCGDGQAIPDDELHIRPNSPA*SRRAPHVAW 91195 +R R R AP P P A A P+ +RP +P R A H+ Sbjct: 76 ---ARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRPRAPECDRGAHHLRT 132 Query: 91196 ACGRTGSSWWP----DRQPLPAQWARPAESPSRGAXXXXXXXXXXXXXXWHRGRRPA--R 91357 RT + P R P + R R RG R R Sbjct: 133 RAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRR 192 Query: 91358 I*LRYRPAPGQPSRGRFRPRCAMRRGWRP 91444 + +R RP PG R R RP R RP Sbjct: 193 VRVRARPGPGAARRPRRRPHPEHPRAVRP 221 >ref|NP_852723.1|putative integrase Length = 348 Score = 41.6 bits (96), Expect = 0.019 Identities = 60/261 (22%), Positives = 106/261 (40%), Gaps = 7/261 (2%) Frame = +2 Query: 41228 WLRKLIPDLKLSEFDR-----VSYQKLINGYAEHHEHQTTMDFHHQLKGAILDAVDEGLI 41392 WL K + D KL+E DR + Y+K G + +T Q++ + AV+ + Sbjct: 90 WLDKYLGDKKLNEIDRTLIKFIQYEKAKEGV----KARTINAVLQQIRVILRAAVEWDWL 145 Query: 41393 QRDPTRKAIIKGKQPRQKKTKYLNQFELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEA 41572 + P K + + K ++ ++L Q E ++ +L P + IL TGLR S Sbjct: 146 DKCPAIKFLPEPK----RRVRWLTQHEEIRLIEELPEHLKPIVQFAIL----TGLRMSNI 197 Query: 41573 LGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDWQLIMQLSVLLKNLPD 41752 L D + +N + K G N ++ + + + K Sbjct: 198 TQLKWSQIDLSKRQAWINSEQS-KTGNSIGVPLNDKAIEVIVSQFGKHKENVFTYKG--- 253 Query: 41753 DKPIFV-NGKVYNSTANGILARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLG 41929 KP+ + N K + + ++AG+ H LRHT A+ + +G + V + LG Sbjct: 254 -KPVRIANTKAFRAAL--------QRAGIKDFRFHDLRHTWATRHIMSGTPL-YVLQELG 303 Query: 41930 HASMNTTQETYLHV-IRELEN 41989 S + T Y H+ + L+N Sbjct: 304 GWSKSDTVRKYAHLSVEHLQN 324 >ref|NP_445687.1|putative helicase Length = 559 Score = 41.2 bits (95), Expect = 0.025 Identities = 36/153 (23%), Positives = 75/153 (49%) Frame = -2 Query: 33268 GYVWHTTGSGKTMTSFKSAQLIADSHDADKVVFLMDRIELGTQSLKEYRSFADSETEVQG 33089 G + TGSGK++ + SA I + + K+V+ ++ T LK++++FA E ++ Sbjct: 195 GIIKAPTGSGKSVIAILSALEILKNKNNAKIVYAVN----STTLLKQFQNFAKKE-DLPF 249 Query: 33088 TENTGVLRDKLNSTNVNDTLIVTSIQKMSNVKAGERGVTQAWLDQLAARRIVFIVDECHR 32909 +G + D++ +D + ++ S K E L +L + I+DE H Sbjct: 250 VLVSGEI-DEIKKGERSDFIALSISYYYSKKKRNE----HEKLKELVTNADLVIIDEAHH 304 Query: 32908 STFGDMLQDIRRSFPNALFFGFTGTPILDENQK 32810 T ++++ + PN++ G + TPI ++ ++ Sbjct: 305 -TPANIVKSLLLDSPNSIRLGLSATPIREDGKE 336 >ref|YP_164279.1|single-stranded DNA-binding protein Length = 167 Score = 40.0 bits (92), Expect = 0.055 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Frame = -1 Query: 108458 MANQQAAVTVTGFVAGDPTLGGTESFRVLT-FRMGSTRSRLNPTTRQWEDYGTAWVGVKA 108282 MA V + G + DP T + +T + ++ S + T Q ++ T W V Sbjct: 1 MARGVNKVILVGHLGQDPDARSTPGGKAVTSLSLATSESWKDKQTGQQQER-TEWHRVVL 59 Query: 108281 FRALAVNAASSVRRGDRIIVVGSLITEQWTNEQGEPRSRT 108162 F LA AA +R+G ++ + GSL T +W + G+ T Sbjct: 60 FGRLAEIAAQYLRKGSQVYIEGSLRTRKWQGQDGQDHYST 99 >ref|NP_569794.1|hypothetical protein Length = 72 Score = 40.0 bits (92), Expect = 0.055 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 3/46 (6%) Frame = +1 Query: 9145 RRWLIKLMKQAAERKNVTFESIRQGGSHEIFQLDGLMIP---HPTS 9273 R +I + +AA K + FE R+GG+H ++ L G+M+P HPTS Sbjct: 3 RSEVIAKISKAARAKGMRFEIAREGGNHTLYSLGGVMVPIGRHPTS 48 >ref|NP_795616.1|putative helicase Length = 409 Score = 39.7 bits (91), Expect = 0.072 Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Frame = -3 Query: 95571 DAKDQSAKLAAITELVETC--VNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTP 95398 D+ +QS K ++++ + +GK+A++++ L+++ F+ G + +++G TP Sbjct: 151 DSVNQSMKSVIYGDVIKHYEKLAKGKQAIVYTHSVEASHLVSDMFNQAGYQSQSVSGKTP 210 Query: 95397 KKKRLELVDQFNADDTPAFLISLKAGNTGLNLTGASVVIHADP 95269 K +R E + F D L++ + G++L V I P Sbjct: 211 KSEREEAMQAFR-DGKLRILVNCELFTEGIDLPNVDVCIMLRP 252 >ref|NP_795446.1|putative DEAD box family helicase Length = 409 Score = 39.7 bits (91), Expect = 0.072 Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Frame = -3 Query: 95571 DAKDQSAKLAAITELVETC--VNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTP 95398 D+ +QS K ++++ + +GK+A++++ L+++ F+ G + +++G TP Sbjct: 151 DSVNQSMKSVIYGDVIKHYEKLAKGKQAIVYTHSVEASHLVSDMFNQAGYQSQSVSGKTP 210 Query: 95397 KKKRLELVDQFNADDTPAFLISLKAGNTGLNLTGASVVIHADP 95269 K +R E + F D L++ + G++L V I P Sbjct: 211 KSEREEAMQAFR-DGKLRILVNCELFTEGIDLPNVDVCIMLRP 252 >ref|NP_813723.1|gp7 Length = 120 Score = 39.7 bits (91), Expect = 0.072 Identities = 27/89 (30%), Positives = 38/89 (42%) Frame = -1 Query: 116771 RSSLSEQLRADEQMEKVRESDLRRLEAIQRQNGQCLYCGRTITFRTCEMDHIVPRKGVGS 116592 R +LS++ RA V + R E ++R +C YC R +DH+ P G Sbjct: 33 RHTLSQKRRATAY--GVEHEEYSRTEIMRRWGYRCAYCDE----RATHLDHVHPLSK-GG 85 Query: 116591 TNTRTNFAAVCAECNRMKSNTPFAIWARS 116505 + +N CA CN K A WA S Sbjct: 86 ADKASNMLPACAGCNLSKGAKTLAEWALS 114 >ref|NP_599058.1|integrase Length = 387 Score = 39.3 bits (90), Expect = 0.094 Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 6/191 (3%) Frame = +2 Query: 41417 IIKGKQPRQKKTKYLNQFELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDF 41596 IIK QP+ K+ ++L E ++ + +P+ + ++ TGLR S + L Sbjct: 172 IIKVPQPKNKRIRWLEPHEAQRLIDECP-EPLKS---VVEFALATGLRRSNIINLEWQQI 227 Query: 41597 DFVHQTLSVNKTWNYKNGG-GFVPTKNASSVRKVQLD----WQLIMQLSVLLKNLPDD-K 41758 D + +N + N G A V K Q+ W + + S PD K Sbjct: 228 DMQRRVAWINPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESC---TKPDGTK 284 Query: 41759 PIFVNGKVYNSTANGILARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHAS 41938 V Y+ AN ++AG+ H LRHT AS L AGV ++ + + G S Sbjct: 285 APTVREMRYD--ANTAWKAALRRAGIDDFRFHDLRHTWASWLGQAGVPLSVLQEMGGWES 342 Query: 41939 MNTTQETYLHV 41971 + + Y H+ Sbjct: 343 IEMVRR-YAHL 352 >ref|NP_795373.1|putative integrase Length = 398 Score = 38.9 bits (89), Expect = 0.12 Identities = 65/272 (23%), Positives = 110/272 (40%), Gaps = 22/272 (8%) Frame = +2 Query: 41252 LKLSEFDRVSYQKLINGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGK 41431 +KL +R Y+ I ++ ++ + DAV G I + K I G+ Sbjct: 112 VKLRNLNRNDYEVYIANMLMTKPRESVKCINNCFMAMLNDAVLNGNIPANRL-KGIYVGE 170 Query: 41432 Q--PRQKKTKYLNQFELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFV 41605 P + K + QF+ + A+ +D I + + + GLR E G+ D F Sbjct: 171 STIPPKNKKVTMEQFQEWFIKAEQMMDKI---FFSLTYLTIFGLRRGEIFGIRQMDIRFH 227 Query: 41606 HQTLSV-----NKTWNYKNGGGFVPTKNASSVRKVQLDWQ--------------LIMQLS 41728 H ++ +++ + KNG + TK S R V LD + + +LS Sbjct: 228 HDGRAILKLHDSRSNHTKNGRHGLKTKE--SERYVMLDLKGTELLLFLRDNATAIKKRLS 285 Query: 41729 VLLKNLPDDKPIFVNGKVYN-STANGILARHCKQAGVPVISIHGLRHTHASLLLFAGVSI 41905 ++ D I +G + N + N + + G V H +RH + + AGV + Sbjct: 286 IIKDKEWDYISIKEDGNLINPNKLNDEFEKVNESVGFRVTP-HMMRHFFTTQSIIAGVPM 344 Query: 41906 ASVSKRLGHASMNTTQETYLHVIRELENKDVD 42001 ++SK LGH M T + Y V EL + D Sbjct: 345 EALSKALGHTKMYMT-DKYNQVHDELSVQVTD 375 >ref|NP_599085.1|unknown Length = 116 Score = 38.5 bits (88), Expect = 0.16 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Frame = -1 Query: 116711 DLRRLEAIQRQNGQCLYCGRTITFRTCE-MDHIVPRKGVGSTNTRTNFAAVCAECNRMKS 116535 D+ R+ +QR G C C R R + +DHI+P K G T+ +N ++C C++ K+ Sbjct: 52 DVIRVRVLQRDKGLCQLCLRAGVAREAKTVDHIIP-KAHGGTDADSNLQSLCWPCHKAKT 110 >ref|NP_047953.1|gp7 Length = 121 Score = 38.5 bits (88), Expect = 0.16 Identities = 26/87 (29%), Positives = 37/87 (42%) Frame = -1 Query: 116771 RSSLSEQLRADEQMEKVRESDLRRLEAIQRQNGQCLYCGRTITFRTCEMDHIVPRKGVGS 116592 R +LS++ RA V + R E ++R +C YC T +DH+ P G Sbjct: 33 RHTLSQKRRATAY--GVEHEEYSRTEIMRRWGYRCAYCDAKAT----HLDHVHPLSK-GG 85 Query: 116591 TNTRTNFAAVCAECNRMKSNTPFAIWA 116511 + N CA+CN K A WA Sbjct: 86 ADAAHNMLPACAKCNLSKGAKTLAEWA 112 >ref|NP_818403.1|gp105 Length = 266 Score = 38.1 bits (87), Expect = 0.21 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = -3 Query: 60858 LDIYTLADAEEGAALPVIVDFHGGGLYYGNKENNECRDML-LARQGFAVVNANYRLVPSV 60682 LDI+ L ++ E A PV + GG G++ M L +QG+ V +YR P Sbjct: 27 LDIW-LPESPENA--PVFMFIPGGAWTIGDRRGQGYAIMSHLVQQGWICVAIDYRTAPKN 83 Query: 60681 SFPAQLADAMAVLDWIRDHGAEYG 60610 +PA D A W+R + +YG Sbjct: 84 HWPAPFEDVSAAFHWVRANIHQYG 107 >ref|NP_536807.1|integrase Length = 337 Score = 38.1 bits (87), Expect = 0.21 Identities = 44/177 (24%), Positives = 77/177 (43%) Frame = +2 Query: 41438 RQKKTKYLNQFELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTL 41617 R+ + +L + +++ +LA+ P+ ++ + TG R+SEA +TL Sbjct: 167 RETELAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEA------------ETL 214 Query: 41618 SVNKTWNYKNGGGFVPTKNASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFVNGKVYNSTA 41797 + ++ YK FV TK+ + R V + +L L L +D Y S Sbjct: 215 TQSQVMPYKIT--FVNTKSKKN-RTVPISKELFDMLPKKRGRLFND--------AYESFE 263 Query: 41798 NGILARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLH 41968 N +L + + H LRHT AS + G +I + + LGH+++ T Y H Sbjct: 264 NAVLRAEIELPKGQLT--HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMR-YAH 317 >ref|NP_490644.1|integrase Length = 389 Score = 38.1 bits (87), Expect = 0.21 Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 27/180 (15%) Frame = +2 Query: 41549 TGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQL---DWQLIM 41719 +G R SEA+ L +D D T+ + + + TK S RKVQL + + Sbjct: 206 SGPRVSEAIALAWEDVDLDTGTVVFRRA---RVRSQYKVTKTRRSTRKVQLLAPALRALQ 262 Query: 41720 QLSVLLKNLPD------------DKPIFVNGKVYNSTA-----------NGILARHCKQA 41830 Q + L + LP KP V +NS + NG H + A Sbjct: 263 QQAKLTRRLPPVQIEVIDRDNRTRKPQRVRFVFHNSASGAAYSTSDTLRNGWWHGHLRNA 322 Query: 41831 GVPVISIHGLRHTHASLLLFAGVSIAS-VSKRLGHASMNTTQETYLHVIRELENKDVDIV 42007 GV + RHT AS +L +G++ ++ ++GH S T + H + + DIV Sbjct: 323 GVRSRGPNQCRHTFASQMLSSGIATPEWIADQMGHTS---TAMIFKHYAKWISKDGPDIV 379 >ref|NP_075481.1|ssDNA binding protein Length = 147 Score = 37.7 bits (86), Expect = 0.27 Identities = 28/99 (28%), Positives = 47/99 (47%) Frame = -1 Query: 108437 VTVTGFVAGDPTLGGTESFRVLTFRMGSTRSRLNPTTRQWEDYGTAWVGVKAFRALAVNA 108258 V + G + DP L G + ++ F + R N T ++E T ++ AF A Sbjct: 4 VNLIGNLVADPELKGQNN-NLVNFVIAVQRPFKNKQTNEYE---TDFIRCVAFGKTAEII 59 Query: 108257 ASSVRRGDRIIVVGSLITEQWTNEQGEPRSRTVLEATNI 108141 A++ +G++I V GS+ T + N QG+ T + NI Sbjct: 60 ANNFNKGNKIGVTGSIQTGSYENNQGQKVFTTDIAVNNI 98 >ref|NP_795389.1|hypothetical protein Length = 210 Score = 37.0 bits (84), Expect = 0.47 Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 5/148 (3%) Frame = -2 Query: 39151 DEKSRSKAARDLIYLIKDIPMDSRQDYDTLGFIYEYLISNFASNAGKKAGEFYTPSEVSQ 38972 D+ SR R + + D+ D + Y A KK + +TP VS+ Sbjct: 29 DKDSREDIFRQFLDIETDLSYD---------WFMRYFEDEHADRKNKK--QDFTPLSVSK 77 Query: 38971 LMSEIVAWHLAGREEINIYDPTSGSGSLLIHIGQAVARRNGNP-----NDIKYYAQELKE 38807 L++ +V+ H ++ G+G +LI Q R + NP +D Y +EL + Sbjct: 78 LLTGLVSGH-------TYHESAVGTGGILIQAWQR-HRISSNPFTYKPSDYWYQVEELSD 129 Query: 38806 NTYNLTRMNLVMRGILPDNIVTRNGDTL 38723 N+ +RGI N V +GD+L Sbjct: 130 RALPFLLFNMSIRGI---NGVVVHGDSL 154 >ref|NP_899402.1|Dda Length = 411 Score = 37.0 bits (84), Expect = 0.47 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 9/145 (6%) Frame = -2 Query: 120007 AILNAGANVFLTGAPGAGKTYVLNEFIRQARADGASVAVTASTGIASTHINGQTIHSWSG 119828 A L + ++ ++G G+GKT+++ + + G +V T + TH +H +G Sbjct: 3 AFLESDGHMTISGPAGSGKTFLMKSILEALESKGKNV-----TMVTPTHQAKNVLHKATG 57 Query: 119827 VGVATXXXXXXXXXXXXXXXXXIQAT---------DILVIDEVSMLHAWLFDMVDQVCRE 119675 V+T + D+LV++E SM+ LF + Sbjct: 58 QEVSTIHSLLKIHPDTYEDQKHFTQSGEVEGLDEIDVLVVEEASMVDEELFQITG----- 112 Query: 119674 VRRDPRPFGGIQVVLSGDFFQLPPV 119600 R PR +++ GD +QL PV Sbjct: 113 -RTMPRK---CRILAVGDKYQLQPV 133 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 670,417,414 Number of Sequences: 14420 Number of extensions: 14284918 Number of successful extensions: 49267 Number of sequences better than 0.5: 99 Number of HSP's better than 0.5 without gapping: 10962 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 49089 length of database: 3,019,461 effective HSP length: 123 effective length of database: 1,245,801 effective search space used: 56245423548 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Scaffold5 (127,313 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_795382.1|putative DNA polymerase III delta prime subunit 295 5e-79 ref|YP_006543.1|Ban 284 1e-75 ref|NP_569740.1|putative terminase gp4 275 6e-73 ref|NP_044960.1|unknown 263 3e-69 ref|NP_047129.1|putative tail tape measure protein 251 1e-65 ref|NP_061570.1|Orf74 249 6e-65 ref|NP_690733.1|DNA helicase 212 6e-54 ref|NP_862888.1|PblA 197 3e-49 ref|NP_817531.1|gp82 196 4e-49 ref|NP_958219.1|gene 44 protein 191 1e-47 ref|NP_037693.1|gene P protein 191 1e-47 ref|NP_720303.1|gp12 191 1e-47 ref|NP_859372.1|P protein 191 2e-47 ref|NP_859206.1|P protein 191 2e-47 ref|NP_050526.1|similar to P protein of bacteriophage HK022 191 2e-47 ref|NP_112058.1|replication protein P 190 2e-47 ref|NP_852741.1|putative DNA replication protein P 182 7e-45 ref|NP_817883.1|gp32 179 4e-44 ref|NP_690734.1|hypothetical protein 178 1e-43 ref|NP_037740.1|Gp55 167 2e-40 ref|NP_690687.1|structural protein 164 1e-39 ref|NP_803295.1|tape measure protein 162 5e-39 ref|YP_006384.1|gp12 161 1e-38 ref|NP_059611.1|Hypothetical protein 160 2e-38 ref|NP_817980.1|gp7 160 3e-38 ref|NP_543071.1|putative helicase 159 5e-38 ref|NP_839940.1|putative lysin 159 6e-38 ref|NP_817976.1|gp3 157 2e-37 ref|NP_817977.1|gp4 157 3e-37 ref|NP_612864.1|putative helicase 154 2e-36 ref|NP_996701.1|putative portal protein 147 2e-34 ref|NP_803269.1|helicase DnaB 145 9e-34 ref|NP_695055.1|Structural protein 144 2e-33 ref|NP_108725.1|unknown 140 2e-32 ref|NP_795521.1|putative structural protein 140 4e-32 ref|NP_852540.1|hypothetical protein 139 6e-32 ref|NP_862873.1|gp34 134 3e-30 ref|NP_862879.1|gp40 128 1e-28 ref|NP_817551.1|gp102 126 6e-28 ref|NP_039678.1|predicted 53.7Kd protein 124 2e-27 ref|NP_046829.1|gp14 124 2e-27 ref|NP_695057.1|putative terminase 124 2e-27 ref|NP_996704.1|large subunit terminase 124 2e-27 ref|NP_996706.1|major head protein 121 2e-26 ref|NP_795519.1|putative terminase 120 3e-26 ref|NP_862877.1|gp38 120 3e-26 ref|NP_817602.1|gp14 120 4e-26 ref|NP_510947.1|similar to phage bIL170 l16 119 5e-26 ref|NP_075278.1|gp11 117 2e-25 ref|YP_164695.1|transposase 117 3e-25 ref|NP_056689.1|putative minor tail protein 117 3e-25 ref|NP_695059.1|Structural protein 117 3e-25 ref|NP_112708.1|TMP 116 6e-25 ref|NP_795513.1|putative structural protein 115 7e-25 ref|NP_047360.1|ORF348; homologous to eryA gene product in L07626 113 4e-24 ref|NP_852599.1|hypothetical protein 110 2e-23 ref|NP_569753.1|putative tape-measure protein 110 3e-23 ref|NP_061640.1|phi PVL ORF 15 and 16 homologue 106 6e-22 ref|NP_803396.1|tail length tape measure protein 105 8e-22 ref|NP_046842.1|minor tail subunit 105 8e-22 ref|NP_049935.1|minor tail protein 105 1e-21 ref|NP_958615.1|77ORF001 103 3e-21 ref|NP_835564.1|hypothetical protein 102 9e-21 ref|NP_795697.1|putative tail protein 101 1e-20 ref|YP_044791.1|RepB 99 9e-20 ref|NP_047257.1|putative replication protein RepB 98 2e-19 ref|YP_024813.1|Pas27 98 2e-19 ref|NP_695118.1|putative tail protein 96 6e-19 ref|NP_663684.1|putative tape-measure protein 88 2e-16 ref|NP_817679.1|gp2 86 8e-16 ref|NP_958546.1|putative protein 86 1e-15 ref|NP_996715.1|putative tape measure protein 86 1e-15 ref|YP_164431.1|host specificity protein 85 1e-15 ref|NP_039690.1|predicted 86.4kd protein; 52Kd observed 85 2e-15 ref|NP_795530.1|putative human platelet-binding protein 84 4e-15 ref|NP_695070.1|putative tape-measure protein 83 7e-15 ref|NP_112710.1|ORF47 80 5e-14 ref|YP_025038.1|putative minor tail protein 79 1e-13 ref|NP_038334.1|ORF33 77 3e-13 ref|NP_108727.1|minor structural protein 3 77 3e-13 ref|NP_075289.1|gp22 75 1e-12 ref|NP_958675.1|reverse transcriptase 74 2e-12 ref|NP_996568.1|reverse transcriptase 74 2e-12 ref|NP_996616.1|hypothetical protein predicted by GeneMark 74 2e-12 ref|NP_795416.1|putative tail fiber protein 74 3e-12 ref|NP_049978.1|putative minor tail protein 72 9e-12 ref|NP_663686.1|structural protein 72 1e-11 ref|NP_490625.1|hypothetical protein 70 4e-11 ref|NP_463525.1|putative SSB protein 70 6e-11 ref|NP_510993.1|tail tape measure protein 69 1e-10 ref|NP_058454.1|orf 16 67 3e-10 ref|NP_046572.1|ABC transporter 66 9e-10 ref|NP_818312.1|gp11 65 1e-09 ref|NP_150175.1|putative minor tail protein 64 3e-09 ref|YP_024459.1|hypothetical protein 64 3e-09 ref|NP_061608.1|single strand DNA binding protein 64 4e-09 ref|NP_848270.1|Gp52 protein 63 6e-09 ref|NP_835645.1|putative transposase 63 6e-09 ref|NP_438126.1|single-strand binding protein 63 8e-09 ref|NP_049403.2|putative tail component protein 63 8e-09 ref|NP_795558.1|putative single-strand DNA-binding protein 63 8e-09 ref|NP_817408.1|gp70 63 8e-09 ref|YP_024717.1|gp44 62 1e-08 ref|NP_945016.1|unknown 62 1e-08 ref|NP_945015.1|unknown 62 1e-08 ref|NP_038310.1|ORF9 62 1e-08 ref|NP_150144.1|putative SSB protein 61 2e-08 ref|NP_112675.1|SSB 61 2e-08 ref|NP_695061.1|hypothetical protein 61 2e-08 ref|NP_996708.1|unknown 61 2e-08 ref|NP_076587.1|SSB protein 61 2e-08 ref|NP_835537.1|single-strand DNA-binding protein 60 4e-08 ref|NP_058484.1|ssDNA binding protein 60 4e-08 ref|NP_612842.1|putative tape-measure protein 60 5e-08 ref|NP_438154.1|tail protein 60 6e-08 ref|NP_795590.1|putative minor tail protein 60 6e-08 ref|NP_690729.1|SSB protein 60 6e-08 ref|NP_944246.1|putative single-strand DNA binding protein 59 8e-08 ref|NP_108692.1|single-strand binding protein 59 1e-07 ref|NP_076745.1|tail protein 59 1e-07 ref|NP_075512.2|hypothetical protein 59 1e-07 ref|NP_064752.1|RPprimase 59 1e-07 ref|NP_569825.1|hypothetical protein 58 2e-07 ref|NP_075481.1|ssDNA binding protein 57 3e-07 ref|NP_803346.1|tail fiber protein 57 3e-07 ref|NP_818427.1|gp129 57 3e-07 ref|NP_817990.1|gp17 57 5e-07 ref|NP_958289.1|ORF9 57 5e-07 ref|NP_818048.1|gp75 55 1e-06 ref|NP_463477.1|putative tape-measure protein 55 2e-06 ref|YP_164279.1|single-stranded DNA-binding protein 54 3e-06 ref|NP_569739.1|hypothetical protein 54 3e-06 ref|NP_817527.1|gp78 54 3e-06 ref|NP_818244.1|gp193 54 3e-06 ref|NP_076649.1|SSB 54 3e-06 ref|NP_818038.1|gp65 54 5e-06 ref|NP_690812.1|P6 membrane protein 53 6e-06 ref|NP_958203.1|gene 27 protein 53 8e-06 ref|NP_047934.1|gp43 53 8e-06 ref|NP_690831.1|membrane protein P6 53 8e-06 ref|NP_862881.1|gp42 52 1e-05 ref|NP_612868.1|putative single stranded DNA binding protein 52 1e-05 ref|NP_943947.1|hypothetical protein 52 1e-05 ref|NP_817400.1|gp62 52 1e-05 ref|NP_663648.1|putative single stranded binding protein 51 2e-05 ref|NP_958600.1|putative lysin 50 4e-05 ref|YP_164427.1|tail tape measure protein 50 5e-05 ref|NP_445719.1|hypothetical protein 49 9e-05 ref|NP_061643.1|phi PVL ORF 20 and 21 homologue 49 1e-04 ref|NP_803287.1|head protein 49 1e-04 ref|YP_006485.1|Ssb 49 1e-04 ref|NP_569784.1|hypothetical protein 48 2e-04 ref|NP_795646.1|putative platlet-binding protein, minor tail fib... 48 3e-04 ref|NP_803398.1|structural protein 48 3e-04 ref|NP_817544.1|gp95 48 3e-04 ref|NP_817352.1|gp14 48 3e-04 ref|NP_758929.1|ORF37 47 3e-04 ref|NP_862885.1|unknown 47 3e-04 ref|NP_835566.1|hypothetical protein 47 3e-04 ref|NP_058458.1|orf 20 47 3e-04 ref|NP_695062.1|hypothetical protein 47 3e-04 ref|NP_958617.1|77ORF002 47 3e-04 ref|NP_695143.1|repressor 47 6e-04 ref|NP_958593.1|putative putative minor tail protein 46 7e-04 ref|NP_795623.1|hypothetical protein 46 0.001 ref|NP_813702.1|gp43 46 0.001 ref|NP_795525.1|hypothetical protein 45 0.002 ref|NP_862882.1|gp43 45 0.002 ref|NP_958555.1|putative lysin 45 0.002 ref|NP_862883.1|gp44 45 0.002 ref|NP_076746.1|tail protein 45 0.002 ref|NP_932387.1|DNA primase-helicase subunit 45 0.002 ref|NP_438130.1|hypothetical protein 44 0.003 ref|NP_795562.1|hypothetical protein 44 0.003 ref|NP_795394.1|hypothetical protein 44 0.003 ref|NP_817882.1|gp31 44 0.004 ref|YP_195134.1|terminase large subunit gp17 44 0.004 ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase 44 0.005 ref|NP_604426.1|Putative structural protein 44 0.005 ref|NP_511035.1|Gp52 protein 44 0.005 ref|NP_996709.1|unknown 44 0.005 ref|NP_862872.1|gp33 43 0.006 ref|NP_958267.1|hypothetical protein 43 0.006 ref|NP_695054.1|hypothetical protein 43 0.006 ref|NP_852484.1|Transcriptional regulator 43 0.006 ref|NP_758934.1|ORF43 43 0.008 ref|NP_690694.1|structural protein 43 0.008 ref|NP_690689.1|hypothetical protein 43 0.008 ref|NP_795511.1|hypothetical protein 42 0.011 ref|NP_046564.1|unknown 42 0.011 ref|NP_945044.1|gp14 42 0.011 ref|NP_818041.1|gp68 42 0.014 ref|NP_818105.1|gp29 42 0.014 ref|NP_958595.1|putative protein 42 0.014 ref|NP_536371.1|putative tail length tape measure protein 42 0.014 ref|NP_945272.1|hypothetical protein 42 0.014 ref|NP_720276.1|GtrB 42 0.018 ref|YP_006358.1|GtrB 42 0.018 ref|NP_817403.1|gp65 42 0.018 ref|NP_112714.1|NPS 42 0.018 ref|NP_059582.1|O-antigen conversion protein 42 0.018 ref|NP_108732.1|minor structural protein 6 42 0.018 ref|NP_695075.1|minor structural protein 42 0.018 ref|NP_996720.1|putative neck passage structure 42 0.018 ref|NP_076693.1|Orf59 42 0.018 ref|NP_050170.1|lysin 41 0.023 ref|NP_958281.1|ORF3 41 0.023 ref|NP_795527.1|putative structural protein 41 0.031 ref|NP_958548.1|putative protein 40 0.040 ref|NP_047125.1|putative accessory fiber 40 0.040 ref|NP_758428.1|hypothetical protein 40 0.052 ref|NP_862868.1|gp29 40 0.052 ref|NP_510939.1|similar to phage A118 gp7 40 0.052 ref|NP_620350.1|P6 protein 40 0.068 ref|YP_164711.1|orf76 40 0.068 ref|NP_818351.1|gp50 39 0.089 ref|NP_599046.1|tail protein 39 0.12 ref|NP_958678.1|Bbp9 39 0.12 ref|NP_996571.1|hypothetical protein predicted by GeneMark 39 0.12 ref|NP_996619.1|hypothetical protein predicted by GeneMark 39 0.12 ref|NP_536400.1|conserved hypothetical protein 39 0.12 ref|NP_945079.1|gp48 39 0.12 ref|NP_862843.1|gp4 39 0.15 ref|NP_050133.1|hypothetical protein 39 0.15 ref|NP_695065.1|Structural protein 39 0.15 ref|NP_996712.1|major tail protein 39 0.15 ref|NP_438117.1|repressor protein 38 0.20 ref|NP_795544.1|putative repressor 38 0.20 ref|YP_006601.1|Gp21 38 0.20 ref|NP_038336.1|ORF35 38 0.26 ref|NP_064745.1|gp7 38 0.26 ref|NP_818533.1|gp233 38 0.26 ref|NP_050160.1|hypothetical protein 38 0.26 ref|NP_853584.1|gp24 38 0.26 ref|NP_040584.1|capsid component 38 0.26 ref|NP_795538.1|putative N-acetylmuramoyl-L-alanine amidase, lysin 37 0.34 ref|NP_795491.1|putative cI-like repressor 37 0.34 ref|NP_599056.1|bactoprenol glucosyltransferase 37 0.34 ref|YP_164321.1|hypothetical protein 37 0.34 ref|NP_112087.1|DNA transfer protein 37 0.34 ref|NP_463497.1|putative repressor protein 37 0.34 ref|NP_056720.1|putative DNA binding protein 37 0.44 ref|YP_024793.1|Pas7 37 0.44 >ref|NP_795382.1|putative DNA polymerase III delta prime subunit Length = 446 Score = 295 bits (756), Expect = 5e-79 Identities = 170/441 (38%), Positives = 267/441 (60%), Gaps = 6/441 (1%) Frame = -2 Query: 87184 PHDDDAEMAVLGGMLMSKDAIGEVSQTIDVTDFYQPKHQTIYNAIIDLFSASQPVDVVLV 87005 PHD +E AVLG + ++ + I EV++ + DFY+P H+ ++ A++ + ++P+DVV V Sbjct: 8 PHDPVSEQAVLGSIFINPEKIIEVAEYLKPDDFYKPAHRILFKAMLSISGNAEPIDVVTV 67 Query: 87004 ANQLLADGNLDKVGGADYLHSLVASVPTAANAMYYAEIVHQRAILRNVIAAGTKIAQLGY 86825 + L + NL +GG YL +V +VPT+A+A +YA+IV ++A LR++I + Y Sbjct: 68 KSVLESQDNLATIGGITYLLEVVNAVPTSAHAEHYAKIVAKKAQLRSIIDNLSDSIGNAY 127 Query: 86824 SAEGSQAEDVVNLAQSEIYEMSMGKVRQDYAAIGPVVHDALDQLDKLQQGLVN-KGVPTG 86648 E ++++ + + E+S + + I V+ + ++++ G+ TG Sbjct: 128 D-ENMDIDEIIAKTERSLIEVSQSSNKSSFRPIHDVLAENYQKIEERSNNNTQITGIATG 186 Query: 86647 FRDIDDVTQGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTSVVFSLEMSKVELAQ 86468 F D D +T GL Q++++A RPAMGK+ ++ A+ A + N VFSLEM L + Sbjct: 187 FYDFDKLTTGLHEDQLIILAARPAMGKTAFALNIAQNVATKSNKAVAVFSLEMGAESLVE 246 Query: 86467 RIISAETDIPMAALRRADDITPERWNTLNRFWTKMQNAPLFIDDSPNMSLMEIRAKCRRL 86288 R+++ E I +R +T E W L ++ AP+FIDD+ + + +IRA+ RRL Sbjct: 247 RMLANEGTIESHHIRTGQ-LTVEEWQRLIYVQGELAEAPIFIDDTAGVKITDIRARARRL 305 Query: 86287 KQTND-LKLVVIDYLQLMTSGKAVESRQQEVSEFSRALKLLAKELEVPVVALSQLNRGPE 86111 Q D L L+VIDYLQL+ G ++RQQEVSE SR LK+LAKEL+VPV+ALSQL+R E Sbjct: 306 SQETDGLGLIVIDYLQLI-QGSRSDNRQQEVSEISRQLKILAKELKVPVIALSQLSRSVE 364 Query: 86110 MRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFY-DKEDRPGEA---DIIMAKHRNGPTE 85943 R DK+P +SDLRESGSIEQDAD+V ++R D+Y DK D E+ ++I+ K+R+G Sbjct: 365 QRQDKRPIMSDLRESGSIEQDADIVAFLYRDDYYTDKSDDQPESNLTELIIKKNRHGSLG 424 Query: 85942 TFHLAFLGATSKFKDMPQDYN 85880 T +L F +KF + ++ N Sbjct: 425 TVNLYFHKEYTKFSSVREEKN 445 >ref|YP_006543.1|Ban Length = 454 Score = 284 bits (727), Expect = 1e-75 Identities = 162/447 (36%), Positives = 267/447 (59%), Gaps = 13/447 (2%) Frame = -2 Query: 87184 PHDDDAEMAVLGGMLMSKDAIGEVSQTIDVTDFYQPKHQTIYNAIIDLFSASQPVDVVLV 87005 P+ AE AVLGG+++ EV+ I DFY H+ I++ + L S +P+D++ + Sbjct: 10 PNSLSAEQAVLGGLMLDNCRWDEVADRIVADDFYTSAHREIFSEMERLLSHGKPIDLITL 69 Query: 87004 ANQLLADGNLDKVGGADYLHSLVASVPTAANAMYYAEIVHQRAILRNVIAAGTKIAQLGY 86825 A L +G L++ GG YL + + P++AN YA+IV +RA++R +I+ +IA+ GY Sbjct: 70 AEALEQNGKLERAGGFAYLAEMSKNTPSSANICAYADIVRERAVVREMISVANEIAEAGY 129 Query: 86824 SAEGSQAEDVVNLAQSEIYEMS-----MGKVRQDYAAIGPVVHDALDQLDKLQQGLVNKG 86660 + +G + +++++A+ ++E++ G +D A+I +++L + V G Sbjct: 130 AQDGRGSNELLDMAERRVFEIAEKRQKSGSGPKDIASILDATVSRIEELFQRPHDGVT-G 188 Query: 86659 VPTGFRDIDDVTQGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTSVVFSLEMSKV 86480 + TGF D++ T GLQP +++VA RP+MGK+T ++ AA++++ +VFSLEM Sbjct: 189 LDTGFTDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLVENAAVRNDKPVLVFSLEMPSH 248 Query: 86479 ELAQRIISAETDIPMAALRRADDITPERWNTLN-RFWTKMQNAPLFIDDSPNMSLMEIRA 86303 +L R +++ + +R + E W ++ + +FIDDS ++ E+R+ Sbjct: 249 QLMMRSLASLARVDQTRIRTGQ-LNDEDWARVSGAMGILLDKQNIFIDDSSALTPTELRS 307 Query: 86302 KCRRL-KQTNDLKLVVIDYLQLMTSGKAVESRQQEVSEFSRALKLLAKELEVPVVALSQL 86126 + RR+ K+ L +++IDYLQLM + ++R E++E SR+LK LAKEL+VPVVALSQL Sbjct: 308 RARRVYKENGGLSMIMIDYLQLMRVPELQDNRTLEIAEISRSLKALAKELQVPVVALSQL 367 Query: 86125 NRGPEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFYDKE-DRPGEADIIMAKHRNGP 85949 NR E R DK+P SDLRESG+IEQDAD++ ++R + Y + + G A++I+ K RNGP Sbjct: 368 NRSLEQRADKRPVNSDLRESGAIEQDADLIMFLYRDEVYHPDSEMKGIAEVIIGKQRNGP 427 Query: 85948 TETFHLAFLGATSKF-----KDMPQDY 85883 T LAF G S+F D +DY Sbjct: 428 IGTVRLAFNGQYSRFDNYAGADWQEDY 454 >ref|NP_569740.1|putative terminase gp4 Length = 474 Score = 275 bits (704), Expect = 6e-73 Identities = 174/459 (37%), Positives = 245/459 (53%), Gaps = 3/459 (0%) Frame = -2 Query: 22759 IIPDDLYTSGEPSLNRLAAAAGDRFDVWQRQINRIILAKSADGFWSARNTVLSIPRQTGK 22580 I P + ++ PS+ A G FD+WQ + ++I AK DG ++A +SIPRQTGK Sbjct: 16 IAPQGIVSTAWPSVRATCGAMGLGFDLWQDDLGKLICAKRDDGLYAADMFAMSIPRQTGK 75 Query: 22579 TYDIGWVAIHRAARTPGMRIVWTAQHFSVIKDTFESLCAIVLRPEMSGLVDPDHGISLAA 22400 TY +G + +TP ++WTA +TF S+ + R +++ + H Sbjct: 76 TYLLGALVFALCIKTPNTTVIWTAHRTRTAAETFRSMQGLAKRDKIAPHILNVH---TGN 132 Query: 22399 GKEEIRFRNGSRIFFRARERGALRGVKKIALLVIDEAQHLSDSAMASMLPTQNRAWNPQT 22220 GKE + F+NGSRI F ARERG RG + +L+ DEAQ L+++AM M+P N A NP Sbjct: 133 GKEAVLFKNGSRILFGARERGFGRGFAGVDVLIFDEAQILTENAMDDMVPATNAAPNPLI 192 Query: 22219 IYMGTPPGPRDNGEAFTRLRDKARAGRTHSTLYVEFTADRDADPLDRQQWRKANPSYPSH 22040 + GTPP P D GE FT +R A AG YVE +AD DADP DR QWRK NPSYP Sbjct: 193 LLAGTPPKPTDPGEVFTVMRLDALAGDVDDVGYVEISADEDADPDDRSQWRKMNPSYPHR 252 Query: 22039 TSDESIANLWENLTGDDFRREALGIWDEHALSRAIDRR-QWEEATIERRRPG-GVMSFGI 21866 TS +I + + L + F+REA+GIW + ++ + + + +W + G + + Sbjct: 253 TSARAILRMRKALGDESFKREAMGIWPKVSVHQPVVKSGRWHDLFDLGPEDGEAPNALAV 312 Query: 21865 DMNPQRTRLTIGACMRYDDNTAHIELAEYRDTNQDGTMWAVNLIDKVWEQTASLVIDGQS 21686 DM+ +++GAC DD+ H+E + T+ T AV+ I + + ++ID S Sbjct: 313 DMS-HGLAISVGACWLMDDDGRHVE-EVWAGTD---TAAAVDWIAERAGRRIPVLIDSMS 367 Query: 21685 PATALLPDLXXXXXXXXXXXXTDMGRACGRLQDMLRDGTLTHLPEDGQQP-LWQAAAKAT 21509 PA AL P+L DM + CG ++ + TLTH G QP L A A A Sbjct: 368 PAAALAPELKARKVKVKLTGAADMAKGCGLFENGVNADTLTH----GDQPALNDALAGAR 423 Query: 21508 TRPIGKNGLFGWNRPDDDTDISPLNAVTLALHGAMTTRR 21392 RPI G +GW+R D I PL AVTLAL GA RR Sbjct: 424 KRPIRDAGGWGWDRRDPTCVIHPLVAVTLALLGAADGRR 462 >ref|NP_044960.1|unknown Length = 999 Score = 263 bits (672), Expect = 3e-69 Identities = 223/872 (25%), Positives = 362/872 (41%), Gaps = 42/872 (4%) Frame = -3 Query: 13725 VITGIAQSVAGKAIEAF-MGLSGEITSASDSAQKFAS---TLNFAGVSEKQIKRLTASTQ 13558 + G+ + + A+ A GL G ++ A D+ + S TL F G + + ++ S Q Sbjct: 153 IAVGVFRQIGSSAVSAVGNGLKGWVSDAMDTQKAMISLQNTLKFKG-NGQDFDYVSKSMQ 211 Query: 13557 DYADKTVYDLNDIRNTTAQLAANGVPNYDRLAEAAGNLNAVA------GGSADTFKSVAM 13396 A T + D T +L+ + D A G A+ GG+ + K V Sbjct: 212 TLAKDTNANTED----TLKLSTTFIGLGDSAKTAVGKTEALVKANQAFGGTGEQLKGVVQ 267 Query: 13395 VLTQTAGQGKLTTENWNQLSD---AIPGASGKIQQALKEAGAYTGNFRDAMADGQITAQE 13225 Q + GK++ EN NQL+D A+ A + A G+F A G I+ + Sbjct: 268 AYGQMSASGKVSAENINQLTDNNTALGSALKSTVMEMNPALKQYGSFASASEKGAISVEM 327 Query: 13224 FNDAIMSLGFTDAAVEAATSASTIEGATGNLEAAFVKLGASVLDSVKPAITGGMSWIADG 13045 + A+ LG + +TI A + LD++ P I+ I D Sbjct: 328 LDKAMQKLGGAGGG-----AVTTIGDAWDSFNETLSLALLPTLDALTPIISS----IIDK 378 Query: 13044 VTNSVPVVQAGIQGVIGWFQRLYSKLEENGAITAFKSAWDAIRDAIMGVVNMVVDWVKLM 12865 + + ++ + + L+ LE+NGA+++ WD ++ V++++ ++ Sbjct: 379 MAGWGESAGKALDSIVKYVKELWGALEKNGALSSLSKIWDGLKSTFGSVLSIIGQLIESF 438 Query: 12864 PPDGAATAIKLIADTLNLIVGNAGKLAPVLIPAVTAFLGFKXXXXXXXXXXXGLDGIFXX 12685 + T A ++ + LA L + F L Sbjct: 439 AGIDSKTGES--AGSVENVSKTIANLAKGLADVIKKIADFAKKFSESKGAIDTLK----- 491 Query: 12684 XXXXXXXXNGVTDLVNGIGGV------SGRIQKIAASTKIAQNAQLAWNAVTSAGTAIQR 12523 T LV G SG I I+A K+ Q AGT + Sbjct: 492 -----------TSLVALTAGFVAFKIGSGIITAISAFKKLQTAIQ--------AGTGVMG 532 Query: 12522 AFNAVLKANPVGFWVTIFATVVAALVWFFTQTEVGRKAWAAFT----------------- 12394 AFNAV+ NP A +VA LV+FFTQTE G+KAWA+F Sbjct: 533 AFNAVMAINPFVALGIAIAAIVAGLVYFFTQTETGKKAWASFVDFLKSAWDGIVSFFSGI 592 Query: 12393 -SWLSETWAALVEGAKAIWNGLGEFLANLWATITGGVQSAWNGIAGFFTGLWQTISGGVT 12217 W ++ W V+GAK IW GL ++ + I GVQ+ WNGI FFT LW T+ G+ Sbjct: 593 GQWFADIWNGAVDGAKGIWQGLVDWFSG----IVQGVQNIWNGITTFFTTLWTTVVTGIQ 648 Query: 12216 GAWTSITTFLSGVWTGIGTTATTIFNGIRDFIV---NVFTVIGALIVAPLQAIQNGIDTV 12046 AW +T F +G+W GI TT+F I + N F +++ ++I + +V Sbjct: 649 TAWAGVTGFFTGLWDGIVNVVTTVFTTISSLVTGAYNWFVTTFQPLISFYKSIFGLVGSV 708 Query: 12045 FGWILSFITQQMNSTNTVWSTVWTAIYNVVSTIFTLISGYISTVVNAIRTVIVVFLDLLK 11866 I + + W I IF +S +STV +AI + ++L Sbjct: 709 INLAFQLILAIIRGAYQLVIGAWNGISGFFGVIFNAVSSVVSTVFSAIGSFAGSAWNVL- 767 Query: 11865 GDWQGAWDAIKSFFTTTWDGIKAFLSNVLDGIKSIWTSVWTAVSQFFTDVWNRIVAFFTP 11686 G W+A+ FF ++ +K +S+ I S +S W VS +W+ + FF+ Sbjct: 768 ---VGVWNAVAGFFGGIFNAVKGVVSSAFSAIGSFASSAWGVVS----SIWSAVSGFFSG 820 Query: 11685 IINGIRNTIGNVLNAISGVWTSVWNAVKSVASAIWNAISGVVSTCIQNVRNTISTVLNAI 11506 I N +R+ + V +A+ G ++ W A+ + S + + SGV +N +S V A Sbjct: 821 IFNAVRSVVSGVFSALGGFASNAWGAITGIFSGVADFFSGV----FDGAKNIVSGVFEAF 876 Query: 11505 SGVWTSVWNSVSSFLGNIWHGITSAVSNGIQSVSNTVGRIRDTVLGAVSGAGGWLYDTGR 11326 ++ WN+++ +++GI S S+ V NT+ D+VLG V+ DT Sbjct: 877 GNFASNAWNAIT----GVFNGIGSFFSDIFGGVKNTI----DSVLGGVT-------DT-- 919 Query: 11325 QIISGLINGIGGAFQWVRNTISNL--GSSLVG 11236 IN I G+ WV + + L GS +VG Sbjct: 920 ------INNIKGSIDWVASKVGGLFKGSMVVG 945 Score = 72.8 bits (177), Expect = 7e-12 Identities = 92/421 (21%), Positives = 170/421 (40%), Gaps = 22/421 (5%) Frame = -3 Query: 12411 AWAAFTSWLSETWAALVEGAKAIWNGLGEFLANLWATITGGVQSAWNGIAGFFTGLWQTI 12232 AW +F LS ++ I + + + +A W G A + I + LW + Sbjct: 349 AWDSFNETLSLALLPTLDALTPIISSIIDKMAG-WGESAG---KALDSIVKYVKELWGAL 404 Query: 12231 SGGVTGAWTSITTFLSGVWTGIGTTATTIFNGIRDFIVNVFTVIGALIVAPLQAIQNGID 12052 GA +S LS +W G+ +T ++ + I I + F I + +++N Sbjct: 405 EKN--GALSS----LSKIWDGLKSTFGSVLSIIGQLIES-FAGIDSKTGESAGSVENVSK 457 Query: 12051 TVFGWI--LSFITQQMNSTNTVWSTVWTAIYNVVSTIFTLISGYISTVVNA-IRTVIVVF 11881 T+ L+ + +++ +S AI + +++ L +G+++ + + I T I F Sbjct: 458 TIANLAKGLADVIKKIADFAKKFSESKGAIDTLKTSLVALTAGFVAFKIGSGIITAISAF 517 Query: 11880 LDLLKG-----DWQGAWDAIKSFFTTTWDGIKAFLSNVLDGIKSIWTSV------WTAVS 11734 L GA++A+ + GI ++ ++ G+ +T W + Sbjct: 518 KKLQTAIQAGTGVMGAFNAVMAINPFVALGIA--IAAIVAGLVYFFTQTETGKKAWASFV 575 Query: 11733 QFFTDVWNRIVAFFTPIINGIRNTIGNVLNAISGVW-TSVWNAVKSVASAIWNAISGVVS 11557 F W+ IV+FF+ I G W +WN A IW + S Sbjct: 576 DFLKSAWDGIVSFFSGI----------------GQWFADIWNGAVDGAKGIWQGLVDWFS 619 Query: 11556 TCIQNVRNTISTVLNAISGVWTSVWNSVSSFLGNIWHGITSAVSNGIQSVSNTVGRIRDT 11377 +Q V+N + N I+ +T++W +V + + W G+T + + N V + T Sbjct: 620 GIVQGVQN----IWNGITTFFTTLWTTVVTGIQTAWAGVTGFFTGLWDGIVNVVTTVFTT 675 Query: 11376 VLGAVSGAGGWLYDTGRQIIS------GLING-IGGAFQWVRNTISNLGSSLVGWAKGVL 11218 + V+GA W T + +IS GL+ I AFQ + I ++G G+ Sbjct: 676 ISSLVTGAYNWFVTTFQPLISFYKSIFGLVGSVINLAFQLILAIIRGAYQLVIGAWNGIS 735 Query: 11217 G 11215 G Sbjct: 736 G 736 >ref|NP_047129.1|putative tail tape measure protein Length = 916 Score = 251 bits (640), Expect = 1e-65 Identities = 208/821 (25%), Positives = 352/821 (42%), Gaps = 40/821 (4%) Frame = -3 Query: 13725 VITGIAQSVAGKAIEAFM-GLSGEITSASDSAQKFAS---TLNFAGVSEKQIKRLTASTQ 13558 + G+ + + A+ A GL G I+ A D+ + T+ F G + K ++ S Q Sbjct: 153 IAVGVFRQIGASAVSAVSNGLRGWISDAMDTQTAMIALKNTMKFKG-NGKDFDYVSNSMQ 211 Query: 13557 DYADKTVYDLNDIRNTTAQLAANGVPNYDRLA--EAAGNLNAVAGGSADTFKSVAMVLTQ 13384 A T + D + G ++ EA N GG+ + K V Q Sbjct: 212 KLARDTNANSEDTLKLSTTFIGLGDSAKTAVSKTEALVKANQAFGGTGENLKGVVQAYGQ 271 Query: 13383 TAGQGKLTTENWNQLSD--AIPGASGK--IQQALKEAGAYTGNFRDAMADGQITAQEFND 13216 + GK+T EN NQL+D GAS K + Q + Y G+F +A++ G ++ + D Sbjct: 272 MSAAGKVTAENINQLTDNNTALGASLKDTVMQMNPQLKQY-GSFNEAVSAGAVS-MDMLD 329 Query: 13215 AIMSLGFTDAAVEAATSASTIEGATGNLEAAFVKLGASVLDSVKPAITGGMSWIADGVTN 13036 M ++ T T G +L A + L+++ P I + D + + Sbjct: 330 KAMQKAADGSSSATKTIRDTWSGFNEDLSQALIP----TLEALTPVINA----LIDKMDD 381 Query: 13035 SVPVVQAGIQGVIGWFQRLYSKLEENGAITAFKSAWDAIRDAIMGVVNMVVDWVKLM--- 12865 I+ V+ +FQ L+ +L++NGAIT F + WD ++ A V+ ++ + +K Sbjct: 382 WGKGAGKAIENVVKYFQDLFKQLQQNGAITQFSAIWDNLKSAFGSVIGIIGNLIKSFAGV 441 Query: 12864 --PPDGAATAIKLIADTLNLIVGNAGKLAPVLIPAVTAFLGFKXXXXXXXXXXXGLDGIF 12691 +T+++ +A+T++ + + + + K L G F Sbjct: 442 DESTSKNSTSVENVANTISSLANKFADITKKIADFIGKISESKSAMDAIKVALVALAGAF 501 Query: 12690 XXXXXXXXXXNGVTDLVNGIGGVSGRIQKIAASTKIAQNAQLAWNAVTSAGTAIQRAFNA 12511 ++NGI A +N + AGT IQ AFNA Sbjct: 502 V-----------AMKVINGI-----------------IKAYETYNKIVEAGTIIQGAFNA 533 Query: 12510 VLKANPVGFWVTIFATVVAALVWFFTQTEVGRKAWAAFT------------------SWL 12385 ++ NP A VVA LV+FFTQTE G+KAWA+F W Sbjct: 534 IMAVNPFVLLGIAIAAVVAGLVYFFTQTETGKKAWASFVDFLKSAWDGIVSFFSGIGQWF 593 Query: 12384 SETWAALVEGAKAIWNGLGEFLANLWATITGGVQSAWNGIAGFFTGLWQTISGGVTGAWT 12205 ++ W V+GAK IW GL ++ I G+Q+ WNGI FFT LW T+ GG+ W Sbjct: 594 ADIWNGAVDGAKGIWQGLVDWFIG----IVQGIQNIWNGITTFFTTLWTTVIGGIQSVWG 649 Query: 12204 SITTFLSGVWTGIGTTATTIFNGIRDFIVNVFTVIGALIVAPLQAIQNGIDTVFGWILSF 12025 +T F SG++ + + +T+F+ I F + + V L ++ + + FG I + Sbjct: 650 GVTGFFSGIFDAVSSVVSTVFSAIGGFASSAWNV--------LVSVWSAVAGFFGGIFNA 701 Query: 12024 ITQQMNSTNTVWSTVWTAIYNVVSTIFTLISGYISTVVNAIRTVIVVFLDLLKGDWQGAW 11845 ++ ++S + + ++ + VV +I++ +SG+ S + N++ +V+ L G AW Sbjct: 702 VSGVVSSVFSAIGSFASSAWGVVQSIWSAVSGFFSGIFNSVSSVVSGVFSALGGFASNAW 761 Query: 11844 DAIKSFFTTTWDGIKAFLSNVLDGIKSIWTSVWTAVSQFFTDVWNRIVA-------FFTP 11686 AI F +G+ F S V +G K + + V+ A +F ++ W+ I FF+ Sbjct: 762 GAISGVF----NGVGNFFSGVFNGAKDVVSGVFNAFGKFASNAWDAITGVFKGLGDFFSG 817 Query: 11685 IINGIRNTIGNVLNAISGVWTSVWNAVKSVASAIWNAISGVVSTCIQNVRNTISTVLNAI 11506 I GI++TI VL ++ ++ ++ VAS + G + + N Sbjct: 818 IFGGIKDTIDRVLGGVTDTIKNIKGSIDWVASKLGKFFKGSMVVGLPE--------FNLS 869 Query: 11505 SGVWTSVWNSVSSFLGNIWHGITSAVSNGIQSVSNTVGRIR 11383 S + NSVSS N + + Q VSN IR Sbjct: 870 SSGYGLSTNSVSS--DNRTYNTFNVQGGAGQDVSNLARAIR 908 Score = 105 bits (261), Expect = 1e-21 Identities = 117/539 (21%), Positives = 211/539 (39%), Gaps = 86/539 (15%) Frame = -3 Query: 12429 TEVGRKAWAAFTSWLSETWAALVEGAKAIWNGLGEFLANLWATITGGV------------ 12286 T+ R W+ F LS+ +E + N L + + + W G Sbjct: 343 TKTIRDTWSGFNEDLSQALIPTLEALTPVINALIDKMDD-WGKGAGKAIENVVKYFQDLF 401 Query: 12285 -QSAWNGIAGFFTGLWQTIS---GGVTGAWTSITTFLSGV----------WTGIGTTATT 12148 Q NG F+ +W + G V G ++ +GV + T ++ Sbjct: 402 KQLQQNGAITQFSAIWDNLKSAFGSVIGIIGNLIKSFAGVDESTSKNSTSVENVANTISS 461 Query: 12147 IFNGIRDFIVNVFTVIGALIVAP--LQAIQNGIDTVFGW-----ILSFITQQMNSTNTVW 11989 + N D + IG + + + AI+ + + G +++ I + + N + Sbjct: 462 LANKFADITKKIADFIGKISESKSAMDAIKVALVALAGAFVAMKVINGIIKAYETYNKIV 521 Query: 11988 S--TVWTAIYNVVSTI--FTLISGYISTVVNAI----------RTVIVVFLDLLKGDWQG 11851 T+ +N + + F L+ I+ VV + + F+D LK Sbjct: 522 EAGTIIQGAFNAIMAVNPFVLLGIAIAAVVAGLVYFFTQTETGKKAWASFVDFLKS---- 577 Query: 11850 AWDAIKSFFTTT------------------WDGIKAFLSNVLDGIKSIW-------TSVW 11746 AWD I SFF+ W G+ + ++ GI++IW T++W Sbjct: 578 AWDGIVSFFSGIGQWFADIWNGAVDGAKGIWQGLVDWFIGIVQGIQNIWNGITTFFTTLW 637 Query: 11745 TAVSQFFTDVWNRIVAFFTPIINGIRNTIGNVLNAISGVWTSVWNAVKSVASA------- 11587 T V VW + FF+ I + + + + V +AI G +S WN + SV SA Sbjct: 638 TTVIGGIQSVWGGVTGFFSGIFDAVSSVVSTVFSAIGGFASSAWNVLVSVWSAVAGFFGG 697 Query: 11586 IWNAISGVVSTCIQNVRN-------TISTVLNAISGVWTSVWNSVSSFLGNIWHGITSAV 11428 I+NA+SGVVS+ + + + ++ +A+SG ++ ++NSVSS + ++ + Sbjct: 698 IFNAVSGVVSSVFSAIGSFASSAWGVVQSIWSAVSGFFSGIFNSVSSVVSGVFSALGGFA 757 Query: 11427 SNGIQSVSNTVGRIRDTVLGAVSGAGGWLYDTGRQIISGLINGIGGAFQWVRNTISNLGS 11248 SN ++S + + G +GA + ++SG+ N G SN Sbjct: 758 SNAWGAISGVFNGVGNFFSGVFNGA--------KDVVSGVFNAFG-------KFASNAWD 802 Query: 11247 SLVGWAKGVLGIHSPSRIFRDEVGKWIPAGMAQGIDKASGLVADSIDGLTDMVPTVSLK 11071 ++ G KG+ S I G+ ID+ G V D+I + + V+ K Sbjct: 803 AITGVFKGLGDFFS-----------GIFGGIKDTIDRVLGGVTDTIKNIKGSIDWVASK 850 >ref|NP_061570.1|Orf74 Length = 446 Score = 249 bits (635), Expect = 6e-65 Identities = 154/439 (35%), Positives = 250/439 (56%), Gaps = 6/439 (1%) Frame = -2 Query: 87181 HDDDAEMAVLGGMLMSKDAIGEVSQTIDVTDFYQPKHQTIYNAIIDLFSASQPVDVVLVA 87002 H +A VLG ML I +S+ + F + +Y I+DL SA P+D++ +A Sbjct: 5 HSLEAGHGVLGAMLKQPHLISVLSEELSPDAFAYSVNADLYRLILDLESAGTPIDIITLA 64 Query: 87001 NQLLADGNLDKVGGADYLHSLVASVPTAANAMYYAEIVHQRAILRNVIAAGTKIAQLGYS 86822 + D+ Y+ +++++ + ANA YA IV +RAI R + + + ++ + Sbjct: 65 EA--KEFLCDETRTMAYVGEILSNIVSVANAKEYARIVRERAISRQIADVASGVEEVAH- 121 Query: 86821 AEGSQAEDVVNLAQSEIYEMSMGKVRQDYAAIGPVVHDALDQL----DKLQQGLVNKGVP 86654 + ED + AQ+ + + G + +G ++ D ++ L D+ Q+G + G+ Sbjct: 122 -QNCSIEDKIAQAQALVLGLDAGGTNGECQMVGDILRDHVEVLQERHDRAQKGDMLDGLS 180 Query: 86653 TGFRDIDDVTQGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTSVVFSLEMSKVEL 86474 TG D+D TQGL+ GQM+V+AGRPAMGK+TL ++ A A++ N +V SLEM+K +L Sbjct: 181 TGIPDLDQYTQGLKSGQMIVIAGRPAMGKTTLAMNIAADVAIKQNRPVLVISLEMTKSQL 240 Query: 86473 AQRIISAETDIPMAALRRADDITPERWNTLNRFWTKMQNAPLFIDDSPNMSLMEIRAKCR 86294 R+I+A IP+ L+ T + L K+++A + + D P M++ IR+ R Sbjct: 241 MDRLIAAVGGIPLQNLKDG-SCTHKESTELAAATLKLRDAKIAVSDVPVMTMPRIRSIAR 299 Query: 86293 RLK-QTNDLKLVVIDYLQLMTSGKAVESRQQEVSEFSRALKLLAKELEVPVVALSQLNRG 86117 R K + DL L+VIDYL L+ G+ + R +V+ SR +KLLA+E+ PV+ L QLNRG Sbjct: 300 RQKHRMGDLGLIVIDYLGLV-EGEG-KGRVDDVTTMSRQMKLLAREIGCPVLPLCQLNRG 357 Query: 86116 PEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPD-FYDKEDRPGEADIIMAKHRNGPTET 85940 E R DK+P LSDLRESG+IEQDAD+V V+R + ++ D+ G +I++ K+R+G + Sbjct: 358 CESRPDKRPVLSDLRESGAIEQDADIVMFVYRDEVYFPNSDKKGIGEILIRKNRDGEIGS 417 Query: 85939 FHLAFLGATSKFKDMPQDY 85883 +F G+ S+F + Y Sbjct: 418 VFTSFQGSKSRFVPLASHY 436 >ref|NP_690733.1|DNA helicase Length = 442 Score = 212 bits (540), Expect = 6e-54 Identities = 143/438 (32%), Positives = 234/438 (53%), Gaps = 4/438 (0%) Frame = -2 Query: 87181 HDDDAEMAVLGGMLMSKDAIGEVSQTIDVTDFYQPKHQTIYNAIIDLFSASQPVDVVLVA 87002 +++ AE AVLG +L + I E T + F KH IY + DL Q VD +A Sbjct: 11 YNEYAEQAVLGSILTEPELIKECPLTPE--HFSPGKHFNIYFTMQDLDRKGQSVDFTSIA 68 Query: 87001 NQLLADGNLDKVGGADYLHSLVASVPTAANAMYYAEIVHQRAILRNVIAAGTKIAQLGYS 86822 ++ L ++GG YL L ASV + + + V + R I+ +I + Sbjct: 69 ARV--GEKLPQLGGFGYLTELAASVASTTTFKQHCQTVSEYFQKRKAISIAQQIIENVNE 126 Query: 86821 AEGSQAEDVVNLAQSEIYEMSMGKVRQDYAAIGPVVHDALDQLDKLQQGLVNKGVPTGFR 86642 ++ + + A SE+ E+ D +I + ++++ + GVP+GF Sbjct: 127 SDDGPVKPIQE-AVSELMEIEASGTDDDDGSIDEALVTVYEEIESADGNIT--GVPSGFT 183 Query: 86641 DIDDVTQGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTSVVFSLEMSKVELAQRI 86462 ++D +T G + V++A RP+MGK+ + A+ + ++ ++ SLEM K E +R+ Sbjct: 184 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNL-HSLEMGKKENIKRL 242 Query: 86461 ISAETDIPMAALRRAD-DITPERWNTLNRFWTKMQNAPLFIDDSPNMSLMEIRAKCRRLK 86285 I I ++ A D E W L+ ++ N+ + I D S+ I +K R+ K Sbjct: 243 IVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTK 302 Query: 86284 QTNDLK--LVVIDYLQLMTSGKAVESRQQEVSEFSRALKLLAKELEVPVVALSQLNRGPE 86111 + N K +V+IDYLQL+ KA +SR ++S+ SR LK +A+EL+V V+ALSQL+R E Sbjct: 303 RKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVE 362 Query: 86110 MRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFYDKE-DRPGEADIIMAKHRNGPTETFH 85934 R DK+P LSDLRESG +EQDAD++ ++R D+YDKE + ++I+AKHR+GP T Sbjct: 363 QRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVIIAKHRDGPVGTVS 422 Query: 85933 LAFLGATSKFKDMPQDYN 85880 LAF+ F ++ + ++ Sbjct: 423 LAFIKEYGNFVNLERRFD 440 >ref|NP_862888.1|PblA Length = 1007 Score = 197 bits (500), Expect = 3e-49 Identities = 219/993 (22%), Positives = 385/993 (38%), Gaps = 110/993 (11%) Frame = -3 Query: 13890 MAIEIATAFVQVVPSMKGVGKAIESAFGSASETAGNTXXXXXXXXXXXXXXXXXGVITGI 13711 MA EIA A+VQ++PS +G+ I+S + AG Sbjct: 1 MATEIAQAYVQLIPSARGITGKIQSILNPEASAAG------------------------- 35 Query: 13710 AQSVAGKAIEAFMGLSGEITSASDSAQKFASTLNFAGVSEKQIKRLTASTQDYADKTVYD 13531 QS + +G+ ++ +A+ + F++ ++ ++ + + + ADK Sbjct: 36 -QSAGQSLGSSLVGVMTKVIAAAGIGKAFSAAISEGAALQQSLGGIETLFKGSADKVKGY 94 Query: 13530 LNDIRNTTAQLAANGV----------------PNYDRLAEAAGNLNAVAGGSADTFKSVA 13399 N+ TT L+AN + ++ AE A N+ + + Sbjct: 95 ANEAYKTTG-LSANAYMENVTGFSASLLQSLGGDTNKAAETA-NMAMIDMSDNANKMGTS 152 Query: 13398 MVLTQTAGQGKLTTENWNQLSDAIPGASG---KIQQALKEAGAYTGNFRDA--MADGQIT 13234 M Q A QG +N+ L + G G ++Q+ L +A TG D ++D Sbjct: 153 MESIQMAYQG-FAKQNYTMLDNLKLGYGGTKQEMQRLLADAEKLTGVKYDINNLSDVYSA 211 Query: 13233 AQEFNDAIMSLGFTDAAVEAATSASTIEGATGNLEAAF------VKLGASVLDSVKPAIT 13072 + + G T A +AST G+ +++AA + LG ++L S+ + Sbjct: 212 IHAIQENLDITGTT-----AKEAASTFSGSFESMKAAAQNVLGKLALGENILPSLHALLK 266 Query: 13071 GGMSWIADGVTNSVPVVQAGI-----QGVIGWFQRLYSKLEENGA---ITAFKSAWDAIR 12916 +++ D + V +G+ +G+ +L+ + ++ ++ Sbjct: 267 TTSTFLFDNFLPMIGNVFSGLGLVLTEGISQIASQLFGDAFGSAVFDQLSRITGIFETFF 326 Query: 12915 DAIMGVVNMVVDWVKLMPPDG----AATAIKLIADTLNLIVGNAGKLAPVLIPAVTAFLG 12748 D I G ++ D + ++ G AAT I IAD + + N G ++ V F+G Sbjct: 327 DMIFGSLSK-QDNIDILNTIGFSEEAATQIVNIADNIRVTFENIGSAIGDVVGIVGDFVG 385 Query: 12747 -----------------------------------FKXXXXXXXXXXXGLDGIFXXXXXX 12673 F L Sbjct: 386 DLLGIKDGEQGVNLLGTAFETVTNFIRKASEHLSKFTKWLKNSPIALDVLKSAVVGITSA 445 Query: 12672 XXXXNGVTDLVNGIGGVSGRIQKIAASTKIAQ--------NAQLAWNAVTSAGTAIQRAF 12517 V ++ GI + I +AQ A+ A A T + F Sbjct: 446 WAGYKAVMTVIKGIEAIRNATLSITNGLMLAQFVRTGALTTAEAANAAATMGASGAFGIF 505 Query: 12516 NAVLKANPVGFWVTIFATVVAALVWFFTQTEVGRKAWAAFTSWLSETWAALVEGAKAIWN 12337 NAVL ANP+G VT A + A LVWFFTQTE G+K W++F W+ + W + + IW+ Sbjct: 506 NAVLAANPIGLIVTAVAALTAGLVWFFTQTETGQKIWSSFVDWIKQAWQGIADFFVGIWS 565 Query: 12336 GLGEFLANLWATI-------TGGVQSAWNGIAGFFTGLWQTISGGVTGAWTSITT----- 12193 G+ E + LW + +++ WN + FF+ LW++I + AWT ITT Sbjct: 566 GISEGASTLWDGVVTTWNAYVESLKAMWNAVVTFFSDLWESIKEAASTAWTLITTAVMMV 625 Query: 12192 ---FLSG---VWTGIGTTATTIFNGIR-------DFIVNVFTVIGALIVAPLQAIQNGID 12052 F+ G +W I T ++ GI+ +FI ++F +GA+++ Sbjct: 626 VQPFIDGFMNIWNNISEGLTQVWEGIKLIFEGAWEFIKSIF--LGAILI----------- 672 Query: 12051 TVFGWILSFITQQMNSTNTVWSTVWTAIYNVVSTIFTLISGYISTVVNAIRTVIVVFLDL 11872 I+ +T S +W I N +S I+ I Y S VV D+ Sbjct: 673 -----IIDLVTGNFGQLGADLSLIWEGIKNGISLIWEGIKTYFSGVV-----------DV 716 Query: 11871 LKGDWQGAWDAIKSFFTTTWDGIKAFLSNVLDGIKSIWTSVWTAVSQFFTDVWNRIVAFF 11692 + G G ++ + +T W+ IK S + IKS +++ T + Q ++WN V+F Sbjct: 717 IVGYATGVFENFSNVLSTIWEFIKTAASMAWEWIKSTVSNLITGLIQGAQNLWNNFVSFL 776 Query: 11691 TPIINGIRNTIGNVLNAISGVWTSVWNAVKSVASAIWNAISGVVSTCIQNVRNTISTVLN 11512 + + I++T + + + N + S A WN + VS + V N + + N Sbjct: 777 SGLWENIKSTASAAWSGLKSLVLGFINGLVSGAQTAWNNMKQAVSDLVTKVTNIFNGIKN 836 Query: 11511 AISGVWTSVWNSVSSFLGNI---WHGITSAVSNGIQSVSNTVGRIRDTVLGAVSGAGGWL 11341 +W + ++ FLG + W G+T N + ++N IRD G + L Sbjct: 837 I--NLWEAGKAILNGFLGGLKSAWEGVT----NFVGGIANW---IRDH-KGPIEYDRKLL 886 Query: 11340 YDTGRQIISGLINGIGGAFQWVRNTISNLGSSL 11242 G I+ L NG+ F+ V+ T+ + + Sbjct: 887 IPAGNAIMGSLDNGLKDGFKDVKKTVGGMSGEI 919 >ref|NP_817531.1|gp82 Length = 420 Score = 196 bits (498), Expect = 4e-49 Identities = 144/439 (32%), Positives = 223/439 (50%), Gaps = 12/439 (2%) Frame = -2 Query: 87187 PPHDDDAEMAVLGGMLMSKDAIGEVSQTIDVTDFYQPKHQTIYNAIIDLFSASQPVDVVL 87008 PP D AE AVLG ML+SK+A V + + DFY+P H T+Y I DL+ A + DV+ Sbjct: 5 PPQDLAAESAVLGAMLLSKNATPAVMEILKPEDFYRPNHATVYQIITDLYMAGESADVIT 64 Query: 87007 VANQLLADGNLDKVGGADYLHSLVASVPTAANAMYYAEIVHQRAILRNVIAAGTKIAQLG 86828 VA +L G L+K+ GA L + +VP+A NA YA IV +A R +I G + QLG Sbjct: 65 VAAELGKQGMLNKI-GAPQLLDMQQNVPSALNATTYATIVKDKARQRRLIELGDRCRQLG 123 Query: 86827 YSAEGSQAEDVVNLAQSEIYEMSMGKVRQDYAAIGPVVHDALDQLDKLQQGL------VN 86666 Y+ + E +AQ+ + + + + +V D+ + +N Sbjct: 124 YTDATTSEEVDALIAQAGQFLSEVEQPTGNGLGFAQLVEKWRTWQDQPSDVIPTPWPELN 183 Query: 86665 KGVPTGFRDIDDVTQGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTSVVFSLEMS 86486 + +P G G PG +VVV GRP GKS G++ AA + + S+VFS+EM Sbjct: 184 RWIPGG---------GFSPGNLVVVGGRPGAGKSNAGLNIISKAA-EDKLKSLVFSVEMD 233 Query: 86485 KVELAQRIISAETDIPMAAL--RRADDITPERWNTLNRFWTKMQNAPLFIDDSPNMSLME 86312 VE+ R+++A T P++ + R ++ T W + + ++ PL I D ++ + E Sbjct: 234 DVEVFSRLLAAGTWSPLSQIIGRSMENST---WERVEEYLDTHKDLPLEIHDDASLRVEE 290 Query: 86311 IRAKCRRLKQTNDLKLVVIDYLQLMTSGKAVESRQQEVSEFSRALKLLAKELEVPVVALS 86132 + ++CR K K+V++DY QLM + + ++ SR+LK+ AK+L + VV S Sbjct: 291 VVSRCRVRKP----KVVMVDYAQLMENSNPKWDERTNIAHISRSLKVAAKQLHMVVVLAS 346 Query: 86131 QLNRGPEMRNDKK----PQLSDLRESGSIEQDADVVFLVHRPDFYDKEDRPGEADIIMAK 85964 QLNR K P L++L S+ +DADVV L+ + D D R + + K Sbjct: 347 QLNRENTKSTAKNGPAIPDLTNLAGGDSLGRDADVVLLLQKAD--DNIIR-----MHVEK 399 Query: 85963 HRNGPTETFHLAFLGATSK 85907 +RNG T L GA S+ Sbjct: 400 NRNGRTGMIELVARGAMSR 418 >ref|NP_958219.1|gene 44 protein Length = 478 Score = 191 bits (486), Expect = 1e-47 Identities = 135/441 (30%), Positives = 225/441 (51%), Gaps = 23/441 (5%) Frame = -2 Query: 87187 PPHDDDAEMAVLGGMLMSKDAIGEVSQTIDVT---DFYQPKHQTIYNAIIDLFSASQPVD 87017 PPH +AE AV+GG+L+ D+ V + + + FY H+ I+ I + +PVD Sbjct: 8 PPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKIIFEEITRMHREKKPVD 67 Query: 87016 VVLVANQLLADGNLDKVGGADYLHSLVASVPTAANAMYYAEIVHQRAILRNVIAAGTKIA 86837 + + ++L VGG Y+ + + P+AAN + YA V + A+ R I T+ Sbjct: 68 GLTLFDELERKSLTASVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINRMTEAT 127 Query: 86836 QLGYSAEGSQAEDVVNLAQS---EIYEMSMGKVRQDYAAIGPVVHDALDQLDK-LQQGLV 86669 +L YS G A QS ++ + + R+ + G V+ D + L+K Sbjct: 128 ELLYSRNGMTATQKYEAIQSIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRFDPSGE 187 Query: 86668 NKGVPTGFRDIDDVT--QGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTSVVFSL 86495 +G+ TG +D + +GL G + V+ RP MGK+TL A A+ +++FSL Sbjct: 188 QRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALMFSL 247 Query: 86494 EMSKVELAQRIISAETDIP-----MAALRRADDITPERWN--------TLNRFWTKMQNA 86354 EM ++ ++++ ++ + + A ADD ++ T NR + Sbjct: 248 EMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRL---SEID 304 Query: 86353 PLFIDDSPNMSLMEIRAKCRRLKQTND-LKLVVIDYLQLMTSGKAVESRQQEVSEFSRAL 86177 L+IDD+P +SL +I ++ RR+K+ + ++++DYL LMT+ KA + ++ L Sbjct: 305 MLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKA-DRNDLAYGMITKGL 363 Query: 86176 KLLAKELEVPVVALSQLNRGPEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFYDKED 85997 K LAKEL+ VV L+QLNR E R +K+P SD R++G IEQD D +HR +D Sbjct: 364 KNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSV 423 Query: 85996 RPGEADIIMAKHRNGPTETFH 85934 PGE ++I+ +R+G T T + Sbjct: 424 PPGETELILRLNRHGNTGTVY 444 >ref|NP_037693.1|gene P protein Length = 478 Score = 191 bits (486), Expect = 1e-47 Identities = 135/441 (30%), Positives = 225/441 (51%), Gaps = 23/441 (5%) Frame = -2 Query: 87187 PPHDDDAEMAVLGGMLMSKDAIGEVSQTIDVT---DFYQPKHQTIYNAIIDLFSASQPVD 87017 PPH +AE AV+GG+L+ D+ V + + + FY H+ I+ I + +PVD Sbjct: 8 PPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKIIFEEITRMHREQKPVD 67 Query: 87016 VVLVANQLLADGNLDKVGGADYLHSLVASVPTAANAMYYAEIVHQRAILRNVIAAGTKIA 86837 + + ++L VGG Y+ + + P+AAN + YA V + A+ R I T+ Sbjct: 68 GLTLFDELERKSLTASVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINRMTEAT 127 Query: 86836 QLGYSAEGSQAEDVVNLAQS---EIYEMSMGKVRQDYAAIGPVVHDALDQLDK-LQQGLV 86669 +L YS G A QS ++ + + R+ + G V+ D + L+K Sbjct: 128 ELLYSRNGMTATQKYEAIQSIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRFDPSGE 187 Query: 86668 NKGVPTGFRDIDDVT--QGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTSVVFSL 86495 +G+ TG +D + +GL G + V+ RP MGK+TL A A+ +++FSL Sbjct: 188 QRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALMFSL 247 Query: 86494 EMSKVELAQRIISAETDIP-----MAALRRADDITPERWN--------TLNRFWTKMQNA 86354 EM ++ ++++ ++ + + A ADD ++ T NR + Sbjct: 248 EMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRL---SEID 304 Query: 86353 PLFIDDSPNMSLMEIRAKCRRLKQTND-LKLVVIDYLQLMTSGKAVESRQQEVSEFSRAL 86177 L+IDD+P +SL +I ++ RR+K+ + ++++DYL LMT+ KA + ++ L Sbjct: 305 MLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKA-DRNDLAYGMITKGL 363 Query: 86176 KLLAKELEVPVVALSQLNRGPEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFYDKED 85997 K LAKEL+ VV L+QLNR E R +K+P SD R++G IEQD D +HR +D Sbjct: 364 KNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSV 423 Query: 85996 RPGEADIIMAKHRNGPTETFH 85934 PGE ++I+ +R+G T T + Sbjct: 424 PPGETELILRLNRHGNTGTVY 444 >ref|NP_720303.1|gp12 Length = 478 Score = 191 bits (485), Expect = 1e-47 Identities = 133/441 (30%), Positives = 227/441 (51%), Gaps = 23/441 (5%) Frame = -2 Query: 87187 PPHDDDAEMAVLGGMLMSKDAIGEVSQTIDVT---DFYQPKHQTIYNAIIDLFSASQPVD 87017 PPH +AE AV+GG+L+ D+ V + + + FY H+ ++ I + +PVD Sbjct: 8 PPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKILFEEITRMHREQKPVD 67 Query: 87016 VVLVANQLLADGNLDKVGGADYLHSLVASVPTAANAMYYAEIVHQRAILRNVIAAGTKIA 86837 + + ++L VGG Y+ + + P+AAN + YA V + A+ R I T+ Sbjct: 68 GLTLFDELERKSLTVSVGGFAYIADIAKNTPSAANIVAYAMQVRETAMERYAINRMTEAT 127 Query: 86836 QLGYSAEG---SQAEDVVNLAQSEIYEMSMGKVRQDYAAIGPVVHDALDQLDK-LQQGLV 86669 +L YS G +Q + + +++ + + R+ + G V+ D + LDK Sbjct: 128 ELLYSRNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGEVMEDWVGDLDKRFDPSGE 187 Query: 86668 NKGVPTGFRDIDDVT--QGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTSVVFSL 86495 +G+ TG +D + +GL G + V+ RP MGK+TL A A+ +++FSL Sbjct: 188 QRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALMFSL 247 Query: 86494 EMSKVELAQRIISAETDIP-----MAALRRADDITPERWN--------TLNRFWTKMQNA 86354 EM ++ ++++ ++ + + A ADD ++ T NR + Sbjct: 248 EMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRL---SEID 304 Query: 86353 PLFIDDSPNMSLMEIRAKCRRLKQTND-LKLVVIDYLQLMTSGKAVESRQQEVSEFSRAL 86177 L+IDD+P +SL +I ++ RR+K+ + ++++DYL LMT+ KA + ++ L Sbjct: 305 MLYIDDTPGLSLAQIVSESRRIKREKGCIGMILVDYLTLMTAEKA-DRNDLAYGMITKGL 363 Query: 86176 KLLAKELEVPVVALSQLNRGPEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFYDKED 85997 K LAKEL+ VV L+QLNR E R +K+P SD R++G IEQD D +HR +D Sbjct: 364 KNLAKELDCVVVLLTQLNRALENRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSV 423 Query: 85996 RPGEADIIMAKHRNGPTETFH 85934 PGE ++I+ +R+G T T + Sbjct: 424 PPGETELILRLNRHGNTGTVY 444 >ref|NP_859372.1|P protein Length = 483 Score = 191 bits (484), Expect = 2e-47 Identities = 133/441 (30%), Positives = 227/441 (51%), Gaps = 23/441 (5%) Frame = -2 Query: 87187 PPHDDDAEMAVLGGMLMSKDAIGEVSQTIDVT---DFYQPKHQTIYNAIIDLFSASQPVD 87017 PPH +AE AV+GG+L+ D+ V + + + FY H+ I+ I + +PVD Sbjct: 13 PPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKIIFEEITRMHREQKPVD 72 Query: 87016 VVLVANQLLADGNLDKVGGADYLHSLVASVPTAANAMYYAEIVHQRAILRNVIAAGTKIA 86837 + + ++L VGG Y+ + + P+AAN + YA V + A+ R I T+ Sbjct: 73 GLTLFDELERKSLTASVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINRMTEAT 132 Query: 86836 QLGYSAEG---SQAEDVVNLAQSEIYEMSMGKVRQDYAAIGPVVHDALDQLDK-LQQGLV 86669 +L YS G +Q + + +++ + + R+ + G V+ D + L+K Sbjct: 133 ELLYSRNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRFDPSGE 192 Query: 86668 NKGVPTGFRDIDDVT--QGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTSVVFSL 86495 +G+ TG +D + +GL G + V+ RP MGK+TL A A+ +++FSL Sbjct: 193 QRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALMFSL 252 Query: 86494 EMSKVELAQRIISAETDIP-----MAALRRADDITPERWN--------TLNRFWTKMQNA 86354 EM ++ ++++ ++ + + A ADD ++ T NR + Sbjct: 253 EMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRL---SEID 309 Query: 86353 PLFIDDSPNMSLMEIRAKCRRLKQTND-LKLVVIDYLQLMTSGKAVESRQQEVSEFSRAL 86177 L+IDD+P +SL +I ++ RR+K+ + ++++DYL LMT+ KA + ++ L Sbjct: 310 LLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKA-DRNDLAYGMITKGL 368 Query: 86176 KLLAKELEVPVVALSQLNRGPEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFYDKED 85997 K LAKEL+ VV L+QLNR E R +K+P SD R++G IEQD D +HR +D Sbjct: 369 KNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSV 428 Query: 85996 RPGEADIIMAKHRNGPTETFH 85934 PGE ++I+ +R+G T T + Sbjct: 429 PPGETELILRLNRHGNTGTVY 449 >ref|NP_859206.1|P protein Length = 483 Score = 191 bits (484), Expect = 2e-47 Identities = 133/441 (30%), Positives = 227/441 (51%), Gaps = 23/441 (5%) Frame = -2 Query: 87187 PPHDDDAEMAVLGGMLMSKDAIGEVSQTIDVT---DFYQPKHQTIYNAIIDLFSASQPVD 87017 PPH +AE AV+GG+L+ D+ V + + + FY H+ I+ I + +PVD Sbjct: 13 PPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKIIFEEITRMHREQKPVD 72 Query: 87016 VVLVANQLLADGNLDKVGGADYLHSLVASVPTAANAMYYAEIVHQRAILRNVIAAGTKIA 86837 + + ++L VGG Y+ + + P+AAN + YA V + A+ R I T+ Sbjct: 73 GLTLFDELERKSLTASVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINRMTEAT 132 Query: 86836 QLGYSAEG---SQAEDVVNLAQSEIYEMSMGKVRQDYAAIGPVVHDALDQLDK-LQQGLV 86669 +L YS G +Q + + +++ + + R+ + G V+ D + L+K Sbjct: 133 ELLYSRNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRFDPSGE 192 Query: 86668 NKGVPTGFRDIDDVT--QGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTSVVFSL 86495 +G+ TG +D + +GL G + V+ RP MGK+TL A A+ +++FSL Sbjct: 193 QRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALMFSL 252 Query: 86494 EMSKVELAQRIISAETDIP-----MAALRRADDITPERWN--------TLNRFWTKMQNA 86354 EM ++ ++++ ++ + + A ADD ++ T NR + Sbjct: 253 EMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRL---SEID 309 Query: 86353 PLFIDDSPNMSLMEIRAKCRRLKQTND-LKLVVIDYLQLMTSGKAVESRQQEVSEFSRAL 86177 L+IDD+P +SL +I ++ RR+K+ + ++++DYL LMT+ KA + ++ L Sbjct: 310 LLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKA-DRNDLAYGMITKGL 368 Query: 86176 KLLAKELEVPVVALSQLNRGPEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFYDKED 85997 K LAKEL+ VV L+QLNR E R +K+P SD R++G IEQD D +HR +D Sbjct: 369 KNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSV 428 Query: 85996 RPGEADIIMAKHRNGPTETFH 85934 PGE ++I+ +R+G T T + Sbjct: 429 PPGETELILRLNRHGNTGTVY 449 >ref|NP_050526.1|similar to P protein of bacteriophage HK022 Length = 483 Score = 191 bits (484), Expect = 2e-47 Identities = 133/441 (30%), Positives = 227/441 (51%), Gaps = 23/441 (5%) Frame = -2 Query: 87187 PPHDDDAEMAVLGGMLMSKDAIGEVSQTIDVT---DFYQPKHQTIYNAIIDLFSASQPVD 87017 PPH +AE AV+GG+L+ D+ V + + + FY H+ I+ I + +PVD Sbjct: 13 PPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKIIFEEITRMHREQKPVD 72 Query: 87016 VVLVANQLLADGNLDKVGGADYLHSLVASVPTAANAMYYAEIVHQRAILRNVIAAGTKIA 86837 + + ++L VGG Y+ + + P+AAN + YA V + A+ R I T+ Sbjct: 73 GLTLFDELERKSLTASVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINRMTEAT 132 Query: 86836 QLGYSAEG---SQAEDVVNLAQSEIYEMSMGKVRQDYAAIGPVVHDALDQLDK-LQQGLV 86669 +L YS G +Q + + +++ + + R+ + G V+ D + L+K Sbjct: 133 ELLYSRNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRFDPSGE 192 Query: 86668 NKGVPTGFRDIDDVT--QGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTSVVFSL 86495 +G+ TG +D + +GL G + V+ RP MGK+TL A A+ +++FSL Sbjct: 193 QRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALMFSL 252 Query: 86494 EMSKVELAQRIISAETDIP-----MAALRRADDITPERWN--------TLNRFWTKMQNA 86354 EM ++ ++++ ++ + + A ADD ++ T NR + Sbjct: 253 EMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRL---SEID 309 Query: 86353 PLFIDDSPNMSLMEIRAKCRRLKQTND-LKLVVIDYLQLMTSGKAVESRQQEVSEFSRAL 86177 L+IDD+P +SL +I ++ RR+K+ + ++++DYL LMT+ KA + ++ L Sbjct: 310 LLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKA-DRNDLAYGMITKGL 368 Query: 86176 KLLAKELEVPVVALSQLNRGPEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFYDKED 85997 K LAKEL+ VV L+QLNR E R +K+P SD R++G IEQD D +HR +D Sbjct: 369 KNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSV 428 Query: 85996 RPGEADIIMAKHRNGPTETFH 85934 PGE ++I+ +R+G T T + Sbjct: 429 PPGETELILRLNRHGNTGTVY 449 >ref|NP_112058.1|replication protein P Length = 478 Score = 190 bits (483), Expect = 2e-47 Identities = 132/441 (29%), Positives = 227/441 (51%), Gaps = 23/441 (5%) Frame = -2 Query: 87187 PPHDDDAEMAVLGGMLMSKDAIGEVSQTIDVT---DFYQPKHQTIYNAIIDLFSASQPVD 87017 PPH +AE AV+GG+L+ D+ V + + + FY H+ ++ I + +PVD Sbjct: 8 PPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKILFEEITRMHREQKPVD 67 Query: 87016 VVLVANQLLADGNLDKVGGADYLHSLVASVPTAANAMYYAEIVHQRAILRNVIAAGTKIA 86837 + + ++L VGG Y+ + + P+AAN + YA V + A+ R I T+ Sbjct: 68 GLTLFDELERKSLTASVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINRMTEAT 127 Query: 86836 QLGYSAEG---SQAEDVVNLAQSEIYEMSMGKVRQDYAAIGPVVHDALDQLDK-LQQGLV 86669 +L YS G +Q + + +++ + + R+ + G V+ D + L+K Sbjct: 128 ELLYSRNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRFDPSGE 187 Query: 86668 NKGVPTGFRDIDDVT--QGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTSVVFSL 86495 +G+ TG +D + +GL G + V+ RP MGK+TL A A+ +++FSL Sbjct: 188 QRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALMFSL 247 Query: 86494 EMSKVELAQRIISAETDIP-----MAALRRADDITPERWN--------TLNRFWTKMQNA 86354 EM ++ ++++ ++ + + A ADD ++ T NR + Sbjct: 248 EMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRL---SEID 304 Query: 86353 PLFIDDSPNMSLMEIRAKCRRLKQTND-LKLVVIDYLQLMTSGKAVESRQQEVSEFSRAL 86177 L+IDD+P +SL +I ++ RR+K+ + ++++DYL LMT+ KA + ++ L Sbjct: 305 MLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKA-DRNDLAYGMITKGL 363 Query: 86176 KLLAKELEVPVVALSQLNRGPEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFYDKED 85997 K LAKEL+ VV L+QLNR E R +K+P SD R++G IEQD D +HR +D Sbjct: 364 KNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSV 423 Query: 85996 RPGEADIIMAKHRNGPTETFH 85934 PGE ++I+ +R+G T T + Sbjct: 424 PPGETELILRLNRHGNTGTVY 444 >ref|NP_852741.1|putative DNA replication protein P Length = 485 Score = 182 bits (462), Expect = 7e-45 Identities = 136/438 (31%), Positives = 228/438 (52%), Gaps = 22/438 (5%) Frame = -2 Query: 87193 RVPPHDDDAEMAVLGGML---MSKDAIGEVSQTIDVTDFYQPKHQTIYNAIIDLFSASQP 87023 ++ P++ AE VLG ++ +SKDA+ V + FY+ +HQ I+ I L +QP Sbjct: 5 KIVPYNLGAEQCVLGALMFGSLSKDAL-VVLDFVKPESFYRFEHQHIFAEIQALAKNNQP 63 Query: 87022 VDVVLVANQLLADGNLDKVGGADYLHSLVASVPTAANAMYYAEIVHQRAILRNVIAAGTK 86843 +D++ V ++L G L+++GG YL L + P+AAN YAEIV + AI R IA Sbjct: 64 IDLMTVESRLSTKGVLEQIGGFAYLAELANNTPSAANIRAYAEIVREDAIKRFTIAKLQD 123 Query: 86842 IAQLGYSAEGSQAED---VVNLAQSEIYEMSMGKVRQDYAAIGPVVHDALDQLD-KLQQG 86675 L + +A D ++ SEI + S + + V D LD+ +L+Q Sbjct: 124 CEALILAQNDLKAADRIEAISCVMSEISDYSRTGKSKGLRSGRDVGTDWLDKYQLRLEQP 183 Query: 86674 LVNKGVPTGFRDIDDVT--QGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTSVVF 86501 +G+ TG + +D+V +GL +V + RP GK+ A L ++F Sbjct: 184 ESVRGILTGIKALDEVIGLKGLVKQSLVALGARPKCGKTAFYSLMAENCILNEKKPVLLF 243 Query: 86500 SLEMSKVELAQRIISAETDIPMAALRRA----DDITPERWNTLNRFWTKMQNAP------ 86351 SLEMS ++ +R++ +I +L D+ + + T++ + Sbjct: 244 SLEMSAEQIFERMLVKRANINANSLYDTGLNDDEFYLKYHLHKDTVMTRVTQSVGELVND 303 Query: 86350 --LFIDDSPNMSLMEIRAKCRRLK-QTNDLKLVVIDYLQLMTSGKAVESRQQEVSEFSRA 86180 L++DD+PN+S+ IR++CRR+K + D+ + IDYL LM + KA E + ++ Sbjct: 304 DLLYVDDTPNVSMSHIRSECRRIKRERGDIGFIGIDYLTLMKAEKA-ERNDLAYGQVTKE 362 Query: 86179 LKLLAKELEVPVVALSQLNRGPEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFYDKE 86000 LK LA+E++ V+ L+QLNRG E R+DK+P SD R++G IEQ+ D +++ Y++ Sbjct: 363 LKNLAREMDCVVLLLTQLNRGLESRSDKRPMPSDSRDTGQIEQECDYWLGLYKESVYNEN 422 Query: 85999 DRPGEADIIMAKHRNGPT 85946 P +II+ +R+G T Sbjct: 423 ADPSLTEIIVRLNRHGGT 440 >ref|NP_817883.1|gp32 Length = 503 Score = 179 bits (455), Expect = 4e-44 Identities = 143/453 (31%), Positives = 206/453 (45%), Gaps = 5/453 (1%) Frame = -2 Query: 22759 IIPDDLYTSGEPSLNRLA-AAAGDRFDVWQRQINRIILAKSADGFWSARNTV----LSIP 22595 +IP D+ S P + R G D WQ I ++LA DG + +TV +SIP Sbjct: 48 VIPSDIAGSYWPRVRRTCNERLGLSLDRWQDGIAGLLLAYRPDGVLA--HTVGGFGVSIP 105 Query: 22594 RQTGKTYDIGWVAIHRAARTPGMRIVWTAQHFSVIKDTFESLCAIVLRPEMSGLVDPDHG 22415 RQ GKT+ + V PG+ +WT+ H +TF+++ A R ++ + Sbjct: 106 RQCGKTHTLTAVLFGLCVEYPGVLAIWTSHHVKTNTETFQAVQAYAKRERVAPFI---RK 162 Query: 22414 ISLAAGKEEIRFRNGSRIFFRARERGALRGVKKIALLVIDEAQHLSDSAMASMLPTQNRA 22235 ++L +G E + F NGSRI F ARERG RG+ + +L+ DEAQ L+ AM ML T N + Sbjct: 163 VTLGSGDEAVEFANGSRILFGARERGFGRGIPGVDVLMSDEAQILTQRAMQDMLATLNTS 222 Query: 22234 WNPQTIYMGTPPGPRDNGEAFTRLRDKARAGRTHSTLYVEFTADRDADPLDRQQWRKANP 22055 IY+GTPP P DN E F+ +R +A G +++E A+ D D +QW ANP Sbjct: 223 RLGLHIYVGTPPKPTDNSEMFSVMRREAETGEATDIVWIECGAEDTGDLDDIEQWMNANP 282 Query: 22054 SYPSHTSDESIANLWENLTGDDFRREALGIWDEHALSRAIDRRQWEEATIERRRPGGVMS 21875 S P T SI L L D FRREALGIWD + S + D W + + Sbjct: 283 SCPHRTPVVSIQRLRRRLDDDGFRREALGIWDA-SESSSFDLAAWSDLGDRGVDAPTRAA 341 Query: 21874 FGIDMNPQRTRLTIGACMRYDDNTAHIELAEYRDTNQDGTMWAVNLIDKVWEQTASLVID 21695 +DM+P R IG D + L +T + V + V E+ V Sbjct: 342 LVLDMSPDRRHCWIGVAGDVDTDDGEKVLLMAMETTAATAVEKVRQL--VNERDIVDVAI 399 Query: 21694 GQSPATALLPDLXXXXXXXXXXXXTDMGRACGRLQDMLRDGTLTHLPEDGQQPLWQAAAK 21515 A AL P L D+ A LQ+ +++ ++ HL Q L A Sbjct: 400 TNGAARALEPALVEAAIEYQRLSQADVAAAYSTLQEGIKNKSVCHL---DQAELNNAMMM 456 Query: 21514 ATTRPIGKNGLFGWNRPDDDTDISPLNAVTLAL 21416 TR + ++R + ++SP A AL Sbjct: 457 TRTRFMTSGESEVFDRRNYSVNLSPAVACASAL 489 >ref|NP_690734.1|hypothetical protein Length = 300 Score = 178 bits (451), Expect = 1e-43 Identities = 103/265 (38%), Positives = 162/265 (61%), Gaps = 4/265 (1%) Frame = -2 Query: 86662 GVPTGFRDIDDVTQGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTSVVFSLEMSK 86483 GVP+GF ++D +T G + V++A RP+MGK+ + A+ + ++ ++ SLEM K Sbjct: 35 GVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNL-HSLEMGK 93 Query: 86482 VELAQRIISAETDIPMAALRRAD-DITPERWNTLNRFWTKMQNAPLFIDDSPNMSLMEIR 86306 E +R+I I ++ A D E W L+ ++ N+ + I D S+ I Sbjct: 94 KENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIW 153 Query: 86305 AKCRRLKQTNDLK--LVVIDYLQLMTSGKAVESRQQEVSEFSRALKLLAKELEVPVVALS 86132 +K R+ K+ N K +V+IDYLQL+ KA +SR ++S+ SR LK +A+EL+V V+ALS Sbjct: 154 SKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALS 213 Query: 86131 QLNRGPEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFYDKE-DRPGEADIIMAKHRN 85955 QL+R E R DK+P LSDLRESG +EQDAD++ ++R D+YDKE + ++I+AKHR+ Sbjct: 214 QLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVIIAKHRD 273 Query: 85954 GPTETFHLAFLGATSKFKDMPQDYN 85880 GP T LAF+ F ++ + ++ Sbjct: 274 GPVGTVSLAFIKEYGNFVNLERRFD 298 >ref|NP_037740.1|Gp55 Length = 458 Score = 167 bits (424), Expect = 2e-40 Identities = 126/439 (28%), Positives = 224/439 (51%), Gaps = 23/439 (5%) Frame = -2 Query: 87172 DAEMAVLGGMLMS--KDAIGEVSQTIDVTDFYQPKHQTIYNAIIDLFSASQPVDVVLVAN 86999 D E +V+GG+L+ +V T++ F P ++ + I +D ++VA Sbjct: 4 DIEASVIGGLLIGGLTPTASDVLATLEPEAFSIPLYRKAFEVIRKQARNRNLIDALMVAE 63 Query: 86998 QLLADGNLDKVGGADYLHSLVAS---VPTAANAMYYAEIV----HQRAIL------RNVI 86858 + G ++ S++ + P+AAN YA +V H+R +L R I Sbjct: 64 EC----------GEEHFTSILMTSKNCPSAANLKGYAGMVADNYHRRLVLEIMDEMREPI 113 Query: 86857 AAGTKIAQLGYSAEGSQAEDVVNLAQSEIYEMSMGKVRQDYAAIGPVVHDALDQLDKLQQ 86678 +GT A E + + + E+ + +G++ DY D LD+ +L+ Sbjct: 114 QSGTIDASSQAMDELVKRLSAIRKPRDEVKPVRLGEIITDYT-------DTLDR--RLRN 164 Query: 86677 GLVNKGVPTGFRDIDDVTQGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTS---- 86510 G + + TG ++D +T G+ +V++A RP MGK+ L + A A + S Sbjct: 165 GEESDTLKTGIDELDAITGGMNAEDLVIIAARPGMGKTELALKIAEGVASRVIPGSDVRR 224 Query: 86509 --VVFSLEMSKVELAQRIISAETDIPMAALRRADDITPERWNTLNRFWTKMQNAPLFIDD 86336 ++FS+EMS +++A+R I+ + ++ LR + E W + +++ + +++ D Sbjct: 225 GVLIFSMEMSALQIAERSIANAGRMSVSVLRNPASMDDEGWARVANGMSQLADLDVWVVD 284 Query: 86335 SPNMSLMEIRAKCRRLKQTN-DLKLVVIDYLQLMTSGKAVESRQQEVSEFSRALKLLAKE 86159 + +S+ EIR+ R KQ N +L L++ DYL L+ KA + ++ S +LK +AK+ Sbjct: 285 ASRLSVEEIRSIAERHKQENPNLSLIMADYLGLIEKPKA-DRNDLAIAHISGSLKAMAKD 343 Query: 86158 LEVPVVALSQLNRGPEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFYDKEDRPGE-A 85982 L+ PV++LSQL+R E R +K+P +DLR+SGSIEQDAD + +++R YD+ A Sbjct: 344 LKTPVISLSQLSRDVEKRPNKRPTNADLRDSGSIEQDADSIIMLYREAVYDENSSAAPFA 403 Query: 85981 DIIMAKHRNGPTETFHLAF 85925 +II+ K+R G T + F Sbjct: 404 EIIVTKNRFGSLGTVYQRF 422 >ref|NP_690687.1|structural protein Length = 646 Score = 164 bits (416), Expect = 1e-39 Identities = 123/447 (27%), Positives = 201/447 (44%), Gaps = 11/447 (2%) Frame = -3 Query: 12300 ITGGVQSAWNGIAGFFTGLWQTISGGVTGAWTSITTFLSGVWTG--IGTTATTIFNGIRD 12127 IT + + NGI GLW + + ++ WT I A+ + GI+ Sbjct: 177 ITSFITALKNGIIQM--GLWIKNMAIMAAQSAANAVKMAAAWTAARISAFASMLAAGIKQ 234 Query: 12126 FIVNVFTVIGALIVAPLQAIQNGIDTVFGWILS-----FITQQMNSTNTVWSTVWTAIYN 11962 I F V A + A A N W+++ +IT + + + W I Sbjct: 235 MIA--FGVRLAALAAAAAA--NAARMAASWVIAMGPIGWITAAVIALVALIIANWDKIKE 290 Query: 11961 VVSTIFTLISGYISTVVNAIRTVIVVFLDLLKGDWQGAWDAIKSFFTTTWDGIKAFLSNV 11782 I+ +S ++S N I+ V L + ++ K TT W+ IK+ S V Sbjct: 291 YTVKIWGAVSKWLSDAWNKIKQAASVVWQALVTLIKKNFEMQKKIVTTVWNTIKSVSSKV 350 Query: 11781 LDGIKSIWTSVWTAVSQFFTDVWNRIVAFFTPIINGIRNTIGNVLNAISGVWTSVWNAVK 11602 +GIKS +SVW + VWN + FFT +N + T + NA+ T VW + Sbjct: 351 WNGIKSFLSSVWNGIVNAGKTVWNGLKTFFTAWLNFQKKTWSTIWNAVKTAVTKVWKGIV 410 Query: 11601 SVASAIWNAISGVVSTCIQNVRNTISTVLNAISGVWTSVWNSVSSFLGNIWHGITSAVSN 11422 SV +WN + ++ + + STV NA+ T+VWN + S + ++ + S+V+N Sbjct: 411 SVGKTVWNGLKSFFTSWLNGQKKLFSTVWNAVKTAVTNVWNKLKSAASSTFNALKSSVTN 470 Query: 11421 GIQSVSNTVGRIRDTVLGAVSGAGGWLYDTGRQIISGLINGIGGAFQWVRNTISNLGSSL 11242 + V + + I ++V+ G L GR I+ GLING+ + V +T S L +++ Sbjct: 471 IMNKVKDKIKSIWNSVMSFFKGIN--LGSIGRNIMQGLINGVTSMWGRVTSTFSRLTNAI 528 Query: 11241 VGWAKGVLGIHSPSRIFRDEVGKWIPAGMAQGIDKASGLVADSIDGLTDM----VPTVSL 11074 K +LGIHSPSR+ RDE+G I G+ +GI G+V + L VPTV Sbjct: 529 PKTIKKILGIHSPSRLMRDEIGYHIGTGLVKGITGTEGMVTKAAASLAKSAVPEVPTV-- 586 Query: 11073 KTDTSRLETPLAYHGTVNGGRIAYTMD 10993 LA + + +GG + +++ Sbjct: 587 --------PELAVNSSYSGGMVEQSVN 605 >ref|NP_803295.1|tape measure protein Length = 910 Score = 162 bits (411), Expect = 5e-39 Identities = 145/626 (23%), Positives = 252/626 (40%), Gaps = 5/626 (0%) Frame = -3 Query: 12951 ITAFKSAWDAIRDAIMGVVNMVVDWVKLMPPDGAATAIKLIADTLNLIVGNAGKLAPVLI 12772 + AF +A I A++ V + W+ + ATA + + +VG L P+++ Sbjct: 320 LVAFATAMAPIASAVLRVAVAITGWIANLFEAHPATA--QLVGVIITLVGAFRFLIPIIL 377 Query: 12771 PAVTAFLGFKXXXXXXXXXXXGLDGIFXXXXXXXXXXNGVTDLVNGIGGVSGRIQKIAAS 12592 AV+ F+G + I G+T L + G ++ I+ Sbjct: 378 -AVSNFMG-----------GGLIGRIIALVSKFGLLRAGLTILKGAFMLLKGPLKIISVI 425 Query: 12591 TKIA-QNAQLAWNAVTSAGTAIQRAFNAVLKANPVGFWVTIFATVVAALVWFFTQTEVGR 12415 ++ L NA+T T + P+ + + A ++A V + + E Sbjct: 426 FQLLFGKIGLIRNAITGLVTVFG------ILGGPITIVIGVIAALIAIFVLLWNKNE--- 476 Query: 12414 KAWAAFTSWLSETWAALVEGAKAIWNGLGEFLANLWATITGGVQSAWNGIAGFFTGLWQT 12235 F +++ W N + F+ N+W + WN I T Sbjct: 477 ----GFRNFIINAW-----------NAIKTFMVNVWNVLKAVASVVWNAILTAITTAVSN 521 Query: 12234 ISGGVTGAWTSITTFLSGVWTGIGTTATTIFNGIRDFIVNVFTVIGALIVAPLQAIQNGI 12055 + + W I +L G+W GI ATT++N + I VFT I +++ Sbjct: 522 VYNFIMIVWNQIVAYLQGLWNGIIAIATTVWNLLVTIITTVFTTIMTIVM---------- 571 Query: 12054 DTVFGWILSFITQQMNSTNTVWSTVWTAIYNVVSTIFTLISGYISTVVNAIRTVIVVFLD 11875 T++ I +F++ N+ T+ +T+W + V++T+FT I T+ NAI T + Sbjct: 572 -TIWTAIWTFLSTIWNTIITIATTIWNLLVTVITTVFTTIMTIAITIWNAIWTFL----- 625 Query: 11874 LLKGDWQGAWDAIKSFFTTTWDGIKAFLSNVLDG----IKSIWTSVWTAVSQFFTDVWNR 11707 Q W+ I + T W+ I +S L I +IW ++W+ +S T +WN+ Sbjct: 626 ------QTLWNTIVTVATKVWNAITTAISTALQAAWSFISNIWNTIWSFLSGILTTIWNK 679 Query: 11706 IVAFFTPIINGIRNTIGNVLNAISGVWTSVWNAVKSVASAIWNAISGVVSTCIQNVRNTI 11527 +V+ FT V++ IS + WN +V+ +Q V Sbjct: 680 VVSIFT-----------QVVSTISDKMSQAWNF--------------IVTKGMQWVSTIT 714 Query: 11526 STVLNAISGVWTSVWNSVSSFLGNIWHGITSAVSNGIQSVSNTVGRIRDTVLGAVSGAGG 11347 ST++N F+ + G + V+ Q ++N V +++ V VS Sbjct: 715 STLIN---------------FVNRVVQGFVNVVNKVSQGMTNAVNKVKSFVDDFVS---- 755 Query: 11346 WLYDTGRQIISGLINGIGGAFQWVRNTISNLGSSLVGWAKGVLGIHSPSRIFRDEVGKWI 11167 G +I GL+ GIG + + +++ + AK LGIHSPSR F D VG + Sbjct: 756 ----AGADMIRGLMRGIGNMARDLAEKAASVAKGALNAAKRALGIHSPSREFMD-VGMYS 810 Query: 11166 PAGMAQGIDKASGLVADSIDGLTDMV 11089 G +GID S V ++ + D V Sbjct: 811 MLGFVKGIDNHSSKVIRNVSNVADKV 836 Score = 42.4 bits (98), Expect = 0.011 Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 4/173 (2%) Frame = -3 Query: 11703 VAFFTPIINGIRNTIGNVLNAISGV--WTSVWNAVKSVASAIWNAISGVVSTCIQNVRNT 11530 VAF I+ I+ L A S + + VKS + I + T + N NT Sbjct: 70 VAFGAMAISAIKMLNDGTLQASSATNEYKKALDGVKSAWTDIIKQNQSAIFTTLANGLNT 129 Query: 11529 ISTVLNAISGVWTSVWNSVSSFLGNI--WHGITSAVSNGIQSVSNTVGRIRDTVLGAVSG 11356 + T + ++ ++ + + ++ W +S S ++ T + + +L A G Sbjct: 130 VKTAMQSLQPFFSGISRGMEEASQSVLKWAENSSVASRFFNMMNTTGVSVFNKLLSAAGG 189 Query: 11355 AGGWLYDTGRQIISGLINGIGGAFQWVRNTISNLGSSLVGWAKGVLGIHSPSR 11197 G L + Q+ FQW + + LG S WA G +S +R Sbjct: 190 FGDGLVNVFTQLAP--------LFQWSADWLDRLGQSFSNWANSAAGENSITR 234 >ref|YP_006384.1|gp12 Length = 458 Score = 161 bits (408), Expect = 1e-38 Identities = 124/436 (28%), Positives = 221/436 (50%), Gaps = 20/436 (4%) Frame = -2 Query: 87172 DAEMAVLGGMLMS--KDAIGEVSQTIDVTDFYQPKHQTIYNAIIDLFSASQPVDVVLVAN 86999 D E +V+GG+L+ +V T++ F P ++ + I +D ++VA Sbjct: 4 DIEASVIGGLLIGGLTPTASDVLATLEPEAFSIPLYRKAFEVIRKQARNRNLIDGLMVAE 63 Query: 86998 QLLADGNLDKVGGADYLHSLVA---SVPTAANAMYYAEIV----HQRAILRNVIAAGTKI 86840 + G +Y +++ S P+AAN YA +V +R +L+ + I Sbjct: 64 EC----------GDEYATAVMMTARSCPSAANLKGYAGMVVDSYQRRQVLQLLDEMREPI 113 Query: 86839 AQLGYSAEGSQAEDVVNLAQSEIYEMSMGKVRQDYAAI--GPVVHDALDQLDK-LQQGLV 86669 + A G +D+V + + K R + + G +++D D LD+ L+ G Sbjct: 114 SNGTLDASGRAMDDLVKRLSA------IRKPRNEVKPVRLGEIINDYTDTLDRRLRNGEE 167 Query: 86668 NKGVPTGFRDIDDVTQGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTS------V 86507 + + TG ++D +T G+ +V++A RP MGK+ L + A A + S + Sbjct: 168 SDTLKTGIEELDAITGGMNAEDLVIIAARPGMGKTELALKIAEGVASRVIPGSGVRRGVL 227 Query: 86506 VFSLEMSKVELAQRIISAETDIPMAALRRADDITPERWNTLNRFWTKMQNAPLFIDDSPN 86327 +FS+EMS +++ +R I+ + ++ LR + E W + + + +++ D+ Sbjct: 228 IFSMEMSAIQVVERGIAGAGMMSVSVLRNPSRMDDEGWARVASGMKLLADLDVWVVDASR 287 Query: 86326 MSLMEIRAKCRRLKQTN-DLKLVVIDYLQLMTSGKAVESRQQEVSEFSRALKLLAKELEV 86150 +S+ EIR+ R KQ + +L L++ DYL L+ KA E ++ S +LK +AK+L+ Sbjct: 288 LSVEEIRSISERHKQEHPNLSLIMADYLGLIEKPKA-ERNDLAIAHISGSLKAMAKDLKT 346 Query: 86149 PVVALSQLNRGPEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFYDKEDRPGE-ADII 85973 PV++LSQL+R E R +K+P +DLR+SGSIEQDAD + +++R YD+ A+II Sbjct: 347 PVISLSQLSRDVEKRPNKRPTNADLRDSGSIEQDADSIIMLYREAVYDENSSAAPFAEII 406 Query: 85972 MAKHRNGPTETFHLAF 85925 + K+R G T + F Sbjct: 407 VTKNRFGSLGTVYQRF 422 >ref|NP_059611.1|Hypothetical protein Length = 458 Score = 160 bits (406), Expect = 2e-38 Identities = 124/436 (28%), Positives = 220/436 (50%), Gaps = 20/436 (4%) Frame = -2 Query: 87172 DAEMAVLGGMLMS--KDAIGEVSQTIDVTDFYQPKHQTIYNAIIDLFSASQPVDVVLVAN 86999 D E +V+GG+L+ +V T++ F P ++ + I +D ++VA Sbjct: 4 DIEASVIGGLLIGGLTPTASDVLATLEPEAFSIPLYRKAFEVIRKQARNRNLIDGLMVAE 63 Query: 86998 QLLADGNLDKVGGADYLHSLVA---SVPTAANAMYYAEIV----HQRAILRNVIAAGTKI 86840 + G +Y +++ S P+AAN YA +V +R +L+ + I Sbjct: 64 EC----------GDEYATAVMMTARSCPSAANLKGYAGMVADSYQRRQVLQLLDEMREPI 113 Query: 86839 AQLGYSAEGSQAEDVVNLAQSEIYEMSMGKVRQDYAAI--GPVVHDALDQLDK-LQQGLV 86669 + A G +++V S + K R + + G +++D D LD+ L+ G Sbjct: 114 SNGTLDASGRAMDELVKRLSS------IRKPRNEVKPVRLGEIINDYTDTLDRRLRNGEE 167 Query: 86668 NKGVPTGFRDIDDVTQGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTS------V 86507 + + TG ++D +T G+ +V++A RP MGK+ L + A A + S + Sbjct: 168 SDTLKTGIEELDAITGGMNAEDLVIIAARPGMGKTELALKIAEGVASRVIPGSGVRRGVL 227 Query: 86506 VFSLEMSKVELAQRIISAETDIPMAALRRADDITPERWNTLNRFWTKMQNAPLFIDDSPN 86327 +FS+EMS +++ +R I+ + ++ LR + E W + + +++ D+ Sbjct: 228 IFSMEMSAIQVVERGIAGAGMMSVSVLRNPSRMDDEGWARVASGMKLLAELDVWVVDASR 287 Query: 86326 MSLMEIRAKCRRLKQTN-DLKLVVIDYLQLMTSGKAVESRQQEVSEFSRALKLLAKELEV 86150 +S+ EIR+ R KQ + +L L++ DYL L+ KA E ++ S +LK +AK+L+ Sbjct: 288 LSVEEIRSISERHKQEHPNLSLIMADYLGLIEKPKA-ERNDLAIAHISGSLKAMAKDLKT 346 Query: 86149 PVVALSQLNRGPEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFYDKEDRPGE-ADII 85973 PV++LSQL+R E R +K+P +DLR+SGSIEQDAD + +++R YD+ A+II Sbjct: 347 PVISLSQLSRDVEKRPNKRPTNADLRDSGSIEQDADSIIMLYREAVYDENSSAAPFAEII 406 Query: 85972 MAKHRNGPTETFHLAF 85925 + K+R G T + F Sbjct: 407 VTKNRFGSLGTVYQRF 422 >ref|NP_817980.1|gp7 Length = 311 Score = 160 bits (404), Expect = 3e-38 Identities = 106/309 (34%), Positives = 151/309 (48%), Gaps = 17/309 (5%) Frame = -1 Query: 17870 IMALDTSKVLLPKEVATVIIKRAKDTSTIAALSPSEPQLFLDKDYMVFTGNSEAEVVAEG 17691 ++AL T LPK + + ++A+ S +A LS +EPQ F ++ YM T EVV EG Sbjct: 1 MVALATGTFQLPKHLVPGVWQKAQGQSVLARLSMAEPQEFGEQQYMTLTAPPRGEVVGEG 60 Query: 17690 AQKSSYEETLTSVVGKRFKVQTTTRLTDELQWADDDAKLEIISKIQADQAAAMGRVLDYV 17511 AQKS T V KVQ T R + E++WAD+ +L ++ + A+GR LD + Sbjct: 61 AQKSESTATFAPVTAIPRKVQVTQRFSQEVKWADESRQLGVLQTMADLSGVALGRALDLI 120 Query: 17510 VYHAFDPKKKTTLEGFNA-------LAKTAVGVPATDDRVADIDSLAEAVSDEYDINGIA 17352 H +P L G A + + G AT D + ++ + D +G+A Sbjct: 121 GIHGINPLTGAALSGSPAKILDTTNIVELTTGTSATPDLAVEA-AVGLVLGDNLSPDGVA 179 Query: 17351 LSKTMANELRKIRVPSTGQRFYPEIPISLQVGNLDGIPAATSGTVNG--RLVTPATGIL- 17181 L T + L R S G++ YPE+ V + G+ AA S TV G VT +TG+ Sbjct: 180 LDNTFSFMLATQR-DSQGRKLYPELGFGTDVASFAGLNAAVSDTVRGGPEAVTASTGVYR 238 Query: 17180 -------AFLGDFRLIRWGMVRDIWSEIIEYGDPDNTGKDLKGVNQIAYRTEAMYSYAIL 17022 A GDF RWG+ I E+IE+GDPD G DLK NQIA R E +Y I+ Sbjct: 239 TTNPNVKAIAGDFSAFRWGVQVSIPLELIEFGDPDGLG-DLKRQNQIAIRAEVVYGIGIM 297 Query: 17021 DPKGIAVLK 16995 AV++ Sbjct: 298 STDAFAVVR 306 >ref|NP_543071.1|putative helicase Length = 463 Score = 159 bits (403), Expect = 5e-38 Identities = 121/426 (28%), Positives = 218/426 (51%), Gaps = 8/426 (1%) Frame = -2 Query: 87178 DDDAEMAVLGGMLM--SKDAIGEVSQTIDVTDFYQPKHQTIYNAIIDLFSASQPVDVVLV 87005 +DD E AV+G + + + ++ T+ F ++ IY I S +D VL+ Sbjct: 8 NDDLEGAVIGAFFLRGADHEVMDILATLSADVFSVRAYRDIYTGICRQARVSGVIDPVLL 67 Query: 87004 ANQL--LADGNLDKVGGADYLHSLVASVPTAANAMYYAEIVHQRAILRNVIAAGTKIAQL 86831 N++ LA D G ++ S + +Y + + A LR+ K Q Sbjct: 68 CNEMPELAPVITD-TGRKTWVKSSLE---------HYVAALRRNAALRDAEKILNKALQK 117 Query: 86830 GYSAEGSQA-EDVVNLAQSEIYEMSMGKVRQDYAAIGPVVHDALDQLDKLQQGLV-NKGV 86657 A +A ED + AQ+ + +S K I V+ + +++++ QGL ++ + Sbjct: 118 LRDAHTCEAAEDALKDAQNMMASLSTEKGIIQPVHIDDVLPEVVERIECRNQGLEKSRTL 177 Query: 86656 PTGFRDIDDVTQGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTSVVFSLEMSKVE 86477 TG ++D T G++PG +V +A RP+MGK+ L +D Q + ++F++EM+ ++ Sbjct: 178 MTGIDELDAKTGGMEPGDLVFIAARPSMGKTELALDIIDKVTEQGHGV-LLFTMEMANIQ 236 Query: 86476 LAQRIISAETDIPMAALRRADDITPERWNTLNRFWTKMQNAPLFIDDSPNMSLMEIRAKC 86297 + +R++SA +P++ L+ E W ++ +M +++ D N+++ EI A Sbjct: 237 IGERMVSAAGGMPVSRLKSVAHFEDEDWARFSQGVGRMTGRNIWMVDQANLTIDEICATT 296 Query: 86296 RR-LKQTNDLKLVVIDYLQLMTSGKAVESRQQEVSEFSRALKLLAKELEVPVVALSQLNR 86120 + + + + LVV+DYL L+ + + V E S+ LK LAK P++ALSQL+R Sbjct: 297 KHHMIKHPETALVVVDYLGLIKT-RTTGRHDLAVGEISKGLKGLAKSGGFPLIALSQLSR 355 Query: 86119 GPEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFYDKEDRP-GEADIIMAKHRNGPTE 85943 G E R +K+P SDL+ SG IE DAD++ +++R + Y+ + + G A+I + K RNG Sbjct: 356 GVESRPNKRPMNSDLKNSGEIEADADIILMLYRDEVYNPDTQARGIAEINITKQRNGSLG 415 Query: 85942 TFHLAF 85925 T + F Sbjct: 416 TIYRRF 421 >ref|NP_839940.1|putative lysin Length = 305 Score = 159 bits (402), Expect = 6e-38 Identities = 87/200 (43%), Positives = 118/200 (59%), Gaps = 6/200 (3%) Frame = -1 Query: 773 MVGIDVSGWQASNVTCTASYDFAVVKVSQGVGFENSSWRTQAKCVTDRGKSLGLYHYAGG 594 M GID+S +QA DF +K ++G + N +WR QA VT K LG YH+A Sbjct: 1 MNGIDISSYQAELNAGIVPSDFVFIKATEGTKYINPTWREQAGQVTQANKLLGFYHFAST 60 Query: 593 NNAASEADYFVGRARDYIGRAVLVLDWESYQNAQWGNSDWVRRFVQRVHTLTGVWPMVYV 414 N +EAD+F+ +DYIG+AVLVLD+E+ WGN R+F+ RV TG+ PM+Y+ Sbjct: 61 GNPIAEADFFISVVKDYIGKAVLVLDFEAGAINAWGNVG-ARQFLNRVKEKTGINPMIYM 119 Query: 413 QASALGQIPGDVRANC-GLWVAQYASNAPTGYQSRPWN----YAIYGE-AMRQYTSNGWV 252 A Q +N LWVAQYAS +PTGYQS PW+ Y + A+ QY+S+G + Sbjct: 120 SAEVTRQFNWSTISNSNALWVAQYASTSPTGYQSEPWSDGKGYGAWSSAAIHQYSSSGTL 179 Query: 251 NGYNGPLDLNYFRGDASQWQ 192 +NG LDLN DA+QW+ Sbjct: 180 MNWNGQLDLNLAYIDANQWK 199 >ref|NP_817976.1|gp3 Length = 506 Score = 157 bits (397), Expect = 2e-37 Identities = 144/485 (29%), Positives = 211/485 (43%), Gaps = 22/485 (4%) Frame = -2 Query: 22780 IDGASCQIIPDDL-YTSGEPSLNRLAAAAGDRFDVWQRQINRIILAKSADGFWSA--RNT 22610 +D A IPDD+ +T + G D WQ I L DG + Sbjct: 15 VDIARQCFIPDDIAFTRYNELIAPELPGMGIVLDRWQEDIWYAALGLREDGTLACDVMGV 74 Query: 22609 VLSIPRQTGKTYDI--GWVAIHRAARTPGMRIVWTAQHFSVIKDTFESLCAIVLRPEMSG 22436 LSI RQ GKT+ + G VAI PG VW++ H T + + IV RPE+ Sbjct: 75 TLSIARQAGKTWGVMVGLVAI--CLSRPGTLAVWSSHHDRTSSQTLDKIAGIVERPEIRP 132 Query: 22435 LVDPDHGISLAAGKEEIRFRNGSRIFFRARERGALRGVKKIALLVIDEAQHLSDSAMASM 22256 + H + + F NGS+I F AR G RG ++ + V DE Q+L DSA+ M Sbjct: 133 KMRAQHPVVATDDNRGVHFANGSKILFGARSSGFGRGFSEVDIQVYDECQNLKDSALTDM 192 Query: 22255 LPTQNRAWNPQTIYMGTPPGPRDNG----EAFTRLRDKARA---GRTHSTLYVEF----- 22112 L N + +MGTPP P++ EAF R RDKA A R +YVEF Sbjct: 193 LAAMNVSEIGLAFFMGTPPRPQEVALGVHEAFKRRRDKALAPVKKRPFKGIYVEFAPESP 252 Query: 22111 ---TADRDADPLDRQQWRKANPSYPSHTSDESIANLWENLTGDDFRREALGIWDE-HALS 21944 AD DA P ++ + NPS+ +I L EN++ +D RRE GIWD+ + Sbjct: 253 ETVVADIDA-PRFWEKLAEVNPSFGFRVGKSAIERLVENMSPEDVRREVFGIWDKTNETL 311 Query: 21943 RAIDRRQWEEATIE-RRRPGGVMSFGIDMNPQRTRLTIGACMRYDDNTAHIELAEYRDTN 21767 + R QW + P V ++GI+ + I AC R + +AH+E+A Sbjct: 312 AVVPRDQWNNLAADVDVDPEDVAAYGINAT-RSGWYWITACWR-EGESAHVEIA----LG 365 Query: 21766 QDGTMWAVNLIDKVWEQTASLVIDGQSPATALLPDLXXXXXXXXXXXXTDMGRACGRLQD 21587 + A+N + + + + D A AL L + G Sbjct: 366 TQSEVEAMNFMSRHATKRTPIKHDSTGAAKALGEKLKKLYFNASAYTQNEAGAGNALWLS 425 Query: 21586 MLRDGTLTHLPEDGQQPLWQAAAKATTRPIGKNGLFGWNRPDDDTDISPLNAVTLALHGA 21407 ++ G L+H DGQQ L + A + + R +G + + DI P +++ A++ A Sbjct: 426 LVEQGRLSH---DGQQDL-ELAVRGSRRQDRTSGGWMLVPRSESFDIGPAISMSGAVYAA 481 Query: 21406 MTTRR 21392 MT RR Sbjct: 482 MTARR 486 >ref|NP_817977.1|gp4 Length = 474 Score = 157 bits (396), Expect = 3e-37 Identities = 137/455 (30%), Positives = 218/455 (47%), Gaps = 24/455 (5%) Frame = -1 Query: 21272 RIKGVEDDDMPTIQKLLTTWRDHYARNMLRAEYYQARYRYNGVAYSIPKQMRALAKPMIG 21093 RI + +D+ I LL + +N+LR YY+ + V IP Q L ++G Sbjct: 8 RIPSLSNDENALINGLLAQIENLRWKNLLRTSYYENKRTIQYVGTLIPPQYFNLGL-VLG 66 Query: 21092 WPNKAVRALADLNVFEGFDAPDPLQAQVD--ELVDDNAWDTDVSEAITSAYIHGCSFI-- 20925 W KAV ALA EGF PD + E+VDDN +++ AI +A HG +F+ Sbjct: 67 WTGKAVDALARRCNLEGFVWPDGDLDSLGGTEVVDDNHLLSEIDSAIVAAMQHGPAFLIN 126 Query: 20924 TVCEDPDEPGRILMLPRSADWSAGVWDRRRRRLGSALTITDKDDRTGRITAFTAWLPGKV 20745 TV ED DEP ++ + + A + G W+RRRR L + L+I DK D+ G++ + +L + Sbjct: 127 TVGED-DEPEALIHV-KDASEATGEWNRRRRGLNNLLSIIDK-DKEGKVLSLALYLDNET 183 Query: 20744 Y--EIDDSEGQWTARTIETHLDRPSVVPLVNDAQSYHPLGNSRITRTLMNLTDFGLRTMV 20571 + D + +W E P+ V A P G SRIT+ +M L D G+R + Sbjct: 184 VTAQRDKATLKWQVDRDEHVYGVPAQVLPYKPAPK-RPFGQSRITKPMMGLQDAGVRELA 242 Query: 20570 RMEATAEFYAAPRVWFIGASK---KFTDDT----WSSIVSVMNGMPANKNGDKPTM---- 20424 R E + ++ P W +GA + K D T W + + + G+P + + D P + Sbjct: 243 RREGHMDVFSYPEFWLLGADESALKNADGTIKSVWEARLGRIKGLPDDADADIPQLARAD 302 Query: 20423 -QQLQQASMTPHADMLRTIALMVSSETDIPVNDLGIT-MDNPASAEAMAEAERKLSRTAD 20250 +Q AS H + +A + + E +P + I+ + NP SAE+ ++ +L A+ Sbjct: 303 VKQFPAASPDAHWSDINGLAKLFAREASLPDTAVAISGLSNPTSAESYDASQYELIAEAE 362 Query: 20249 RQNKRFGRALKEAMSIALAYQG-----ADPDALRELRPIWAPVKETSDAARADWYQKVAS 20085 F AL++A ALA + PD + + W + S +A+AD K + Sbjct: 363 GAVDDFTPALRKAFIRALAMKNKVAIDEIPDEWKSIDAKWRDPRYLSKSAQADAGMKQLA 422 Query: 20084 ANPAFADSDVGLTRAGLTWDEIKAHRAYERQQRTQ 19980 A P A+++VGL GLT + A RA ++R Q Sbjct: 423 AVPWLAETEVGLELIGLTPQQ--ARRAMADKRRVQ 455 >ref|NP_612864.1|putative helicase Length = 427 Score = 154 bits (388), Expect = 2e-36 Identities = 114/436 (26%), Positives = 223/436 (51%), Gaps = 11/436 (2%) Frame = -2 Query: 87172 DAEMAVLGGMLMSKDAIGEVSQTIDVTDFYQPKHQTIYNAIIDLFSASQPVDVVLVANQL 86993 ++E +LG ++ + + + + DFY KH+ I+ AI +L+ + D+ +++ +L Sbjct: 8 ESEKIILGTIIQDNELMLKAINILGENDFYNSKHKIIFRAIKELYKNNISFDLTILSEKL 67 Query: 86992 LADGNLDKVGGADYLHSLVASVPTAANAM-YYAEIVHQRAILRNVIAAGTKIAQLGYSAE 86816 D + +D S T+ A + +V +++ R + I + E Sbjct: 68 SNDIKKQVLTLSDLTE---ISYHTSRGAFDSHLSLVKEKSKERKLNETCKSILTTPGTIE 124 Query: 86815 GSQAEDVVNLAQSEIYEMSMGKVRQDYAAIGPVVHDALDQLDKL---QQGLVNKGVPTGF 86645 ++ Q+ + E++ + ++ + V+ ++++K + G+ G+ TG Sbjct: 125 SK-----IDFLQNTLLELNSSEDKEKVYTMSEVMEKTFEKIEKAFSSKSGIT--GISTGI 177 Query: 86644 RDIDDVTQGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNMTSVVF-SLEMSKVELAQ 86468 R ID+ T GL+ + +V+ RP+MGK+ L + A +++ +V++ L+MSK + Q Sbjct: 178 RKIDNATNGLEKKEFIVLGARPSMGKTALSL-----AIMENIQGNVLYIQLDMSKEGMGQ 232 Query: 86467 RIISAETDIPMAALRRADDITPERWNTLNRFWTKMQNAPLFIDDSPNMSLMEIRAKCRRL 86288 R++++ + I + R E + +N F + +FI + ++++ +IR +++ Sbjct: 233 RLLASNSYIENGKIARGKFNDNEMKSIINVFDRLSRKENIFIYEPASITVNQIRLIAKQI 292 Query: 86287 KQTNDLKLVVIDYL-QLMTSGKAVESRQQEVSEFSRALKLLAKELEVPVVALSQLNRGPE 86111 K + L ++++D++ ++ + K + Q S S LK +AKEL V +V L QL+R E Sbjct: 293 KIKHGLDVIIVDHIGKIKPTTKGTKYEQS--SYISNTLKSIAKELNVAMVGLCQLSRAAE 350 Query: 86110 MRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFY----DKEDRPGEA-DIIMAKHRNGPT 85946 R D +P LSDLR++GSIE+DADV+ L++R +Y DKED G+ +I AK RNG T Sbjct: 351 QRADHRPMLSDLRDTGSIEEDADVIGLLYRDGYYRAREDKEDIVGDVLEINFAKCRNGRT 410 Query: 85945 ETFHLAFLGATSKFKD 85898 L + T + + Sbjct: 411 GVVELQYHLPTQRLSE 426 >ref|NP_996701.1|putative portal protein Length = 409 Score = 147 bits (372), Expect = 2e-34 Identities = 112/394 (28%), Positives = 186/394 (47%), Gaps = 11/394 (2%) Frame = -1 Query: 21206 HYARNMLRAEYYQARY--RYNGVAYSIPKQMRALAKPMIGWPNKAVRALADLNVFEGFDA 21033 H R +R + Y +Y R+ G+ +IP+ + + ++GW K V +LAD VF F+ Sbjct: 16 HKRRAEMRYDQYAMKYVDRFKGI--TIPQALSQQYRSILGWCAKGVDSLADRLVFREFEN 73 Query: 21032 PDPLQAQVDELVDDNAWDTDVSEAITSAYIHGCSFITVCEDPDEPGRILMLPRSADWSAG 20853 D V+E+ ++N D A+ S+ I CSF + + ++ R+ ++ A + G Sbjct: 74 DD---FTVNEIFEENNPDIFFDSAVLSSLIASCSFTYISKGENDAVRLQVI--EAVNATG 128 Query: 20852 VWDRRRRRLGSALTITDKDDRTGRITAFTAWLPGKV-YEIDDSEGQWTARTIETHLDRPS 20676 + D L + ++D+ + +LP + Y DS + H P Sbjct: 129 IIDPITGLLTEGYAVLERDENNN-VVLEAHFLPDRTDYYYRDSRNNISIANPTGH---PL 184 Query: 20675 VVPLVNDAQSYHPLGNSRITRTLMNLTDFGLRTMVRMEATAEFYAAPRVWFIGASKKFTD 20496 +VP+++ + P G SRITR+ M RT+ R + TAEFY+ P+ + G S Sbjct: 185 LVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSFPQKYVTGLSDDAEP 244 Query: 20495 -DTWSSIVSVMNGMPANKNGDKPTMQQLQQASMTPHADMLRTIALMVSSETDIPVNDLGI 20319 +TW + VS M +++GDKPT+ Q Q SM+P + LRT A + ET + ++DLG Sbjct: 245 METWKATVSSMLQFTKDEDGDKPTLGQFTQPSMSPFTEQLRTAAAGFAGETGLTLDDLGF 304 Query: 20318 TMDNPASAEAMAEAERKLSRTADRQNKRFGRALKEAMSIALAYQGADP---DALRELRPI 20148 DNP+S EA+ + L + + G L +A + P + R+ +P Sbjct: 305 VSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDAPYLREQFRKTKPK 364 Query: 20147 WAPVKETSDAAR----ADWYQKVASANPAFADSD 20058 W P+ E +DA+ D K+ A P F + D Sbjct: 365 WEPLFE-ADASMLSLIGDGAIKLNQAIPEFINKD 397 >ref|NP_803269.1|helicase DnaB Length = 413 Score = 145 bits (366), Expect = 9e-34 Identities = 87/269 (32%), Positives = 151/269 (56%), Gaps = 5/269 (1%) Frame = -2 Query: 86695 LDKLQQGLVNKGVPTGFRDIDDVTQGLQPGQMVVVAGRPAMGKSTLGIDFARAAALQHNM 86516 +++L K + TG++ +D GL+P Q++V+A RP++GK+ ++ A Q+ Sbjct: 147 VEELYSDSPKKQIKTGYKLMDYKIGGLEPSQLIVIAARPSVGKTGFALNMMLNIA-QNGY 205 Query: 86515 TSVVFSLEMSKVELAQRIISAETDIPMAALRRADDITPERWNTLNRFWTKMQNAPLFIDD 86336 + FSLE + + +R++S T I + ++ ++TP+ L K+ + I D Sbjct: 206 KTSFFSLETTGTSVLKRMLSTITGIELTKIKEIRNLTPDDLTKLTNAMDKIMKLGIDISD 265 Query: 86335 SPNMSLMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKAVESRQQEVSEFSRALKLLAKEL 86156 N++ ++RA+ R ++ +++ IDYLQLM + V+ R+ V + SR LK++A E Sbjct: 266 KSNITPQDVRAQAMR--HSDRQQVIFIDYLQLMDTDAKVD-RRVAVEKISRDLKIIANET 322 Query: 86155 EVPVVALSQLNRGPEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFY--DKEDRPGEA 85982 +V LSQLNRG E R DK+P LSD++ESG IE DA + L++R D+Y D++D Sbjct: 323 GAIIVLLSQLNRGVESRQDKRPMLSDMKESGGIEADASLAMLLYRDDYYNRDEDDSITGK 382 Query: 85981 DII---MAKHRNGPTETFHLAFLGATSKF 85904 I+ +AK+++G T + T +F Sbjct: 383 SIVECNIAKNKDGETGIIEFEYYKKTQRF 411 >ref|NP_695055.1|Structural protein Length = 409 Score = 144 bits (363), Expect = 2e-33 Identities = 111/394 (28%), Positives = 184/394 (46%), Gaps = 11/394 (2%) Frame = -1 Query: 21206 HYARNMLRAEYYQARY--RYNGVAYSIPKQMRALAKPMIGWPNKAVRALADLNVFEGFDA 21033 H R +R E Y ++ R+ G+ +IP+ + + ++GW K V +LAD VF F+ Sbjct: 16 HKRRAEMRYEQYAMKHVDRFKGI--TIPQALSQQYRSILGWCAKGVDSLADRLVFREFEN 73 Query: 21032 PDPLQAQVDELVDDNAWDTDVSEAITSAYIHGCSFITVCEDPDEPGRILMLPRSADWSAG 20853 D V+E+ ++N D + SA I CSF + + ++ R+ ++ A + G Sbjct: 74 DD---FTVNEIFEENNPDIFFDSTVLSALIASCSFTYISKGENDAVRLQVI--EATNATG 128 Query: 20852 VWDRRRRRLGSALTITDKDDRTGRITAFTAWLPGKV-YEIDDSEGQWTARTIETHLDRPS 20676 + D L + ++D+ + +LP + Y DS + I P Sbjct: 129 IIDPITGLLTEGYAVLERDENNN-VVLEAHFLPDRTDYYYRDSRNNIS---IANPTGNPL 184 Query: 20675 VVPLVNDAQSYHPLGNSRITRTLMNLTDFGLRTMVRMEATAEFYAAPRVWFIGASKKFTD 20496 +VP+++ + P G SRITR+ M RT+ R + TAEFY+ P+ + G S Sbjct: 185 LVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSFPQKYVTGLSDDAEP 244 Query: 20495 -DTWSSIVSVMNGMPANKNGDKPTMQQLQQASMTPHADMLRTIALMVSSETDIPVNDLGI 20319 +TW + VS M +++GDKPT+ Q Q SM+P + LRT A + ET + ++DLG Sbjct: 245 METWKATVSSMLQFTKDEDGDKPTLGQFTQPSMSPFTEQLRTAAAGFAGETGLTLDDLGF 304 Query: 20318 TMDNPASAEAMAEAERKLSRTADRQNKRFGRALKEAMSIALAYQGADP---DALRELRPI 20148 DNP+S EA+ + L + + G L +A + P + + +P Sbjct: 305 VSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDVPYLREQFSKTKPK 364 Query: 20147 WAPVKETSDAAR----ADWYQKVASANPAFADSD 20058 W P+ E +DA+ D K+ A P F + D Sbjct: 365 WEPLFE-ADASMLSLIGDGAIKLNQAIPEFINKD 397 >ref|NP_108725.1|unknown Length = 1025 Score = 140 bits (354), Expect = 2e-32 Identities = 110/497 (22%), Positives = 204/497 (41%), Gaps = 51/497 (10%) Frame = -3 Query: 12426 EVGRKAWAAFTSWLSETWAALVEGAKAIWNGLGEFLANLWATITGGVQSAWNGIAGFFTG 12247 EV ++ W T W S+TW ++ EGAK +WNG + + V++AWNGI +F Sbjct: 486 EVIKEKWGDITQWFSDTWKSIKEGAKGLWNGTIQGAKDA----VDSVKNAWNGIKEWFAN 541 Query: 12246 LWQTISGGVTGAWTSITT------------------FLSGVWTGIGTTATTIFNGIRDFI 12121 LW+ + G++ AW S+TT F SG+W + T + + I+ + Sbjct: 542 LWKGTTSGLSSAWDSVTTTLAPFVETIKTIFQPMLDFFSGLWGQVKTIFGSAWEIIKTVV 601 Query: 12120 VNVFTVIGALIVAPL-----------QAIQNGIDTVFGWILSFITQQMNSTNTVWSTVWT 11974 + ++ LI Q + I T+ ++ + +S +WT Sbjct: 602 MGPVLLLIDLITGDFNQFKEDFGMLWQTLATAIQTIVQTFVNIVVGLYSSFFQTVVNIWT 661 Query: 11973 AIYNVVSTIFTLISGYISTVVNAIRTVIVVFLDLLKGDWQGAWDAIKSFFTTTWDGIKAF 11794 I N + +++ + ++ + +I IV + K W+A + TW K + Sbjct: 662 TIVNTIQSLWGAFTTWVVNMAKSIVDGIVNGWNSFKQGTVDLWNATIQWVKDTWASFKQW 721 Query: 11793 LSN----VLDGIKSIWTS-------VWTAVSQFFTDVWNRIVAFFTPIINGIRNTIGNVL 11647 + N ++DGI + W S +W A Q+ D W +F ++N ++ + ++ Sbjct: 722 VVNMAKSIVDGIVNGWNSFKQGTVDLWNATIQWVKDTW---ASFKQWVVNMAKSIVDGIV 778 Query: 11646 NAISGVWTSVWNAVKSVASAIWNA----ISGVVSTCIQNVRNTISTVLNAISGVWTS--- 11488 N WN+ K +WNA + ++ Q V ++ + ++N + W + Sbjct: 779 NG--------WNSFKQGTVDLWNATIQWVKDTWASFKQWVVDSANAIVNGVKQGWKNLKQ 830 Query: 11487 ----VWNSVSSFLGNIWHGITSAVSNGIQSVSNTVGRIRDTVLGAVSGAGGWLYDTGRQI 11320 +W + + L IW G+ +VS+ I +V T +++ L D G+ I Sbjct: 831 GTIDLWKGMINGLKGIWDGLKQSVSDLIDNVKTTFNNLKNIN----------LLDIGKAI 880 Query: 11319 ISGLINGIGGAFQWVRNTISNLGSSLVGWAKGVLGIHSPSRIFRDEVGKWIPAGMAQGID 11140 I G + G+ ++ IS +G W + G R G I G+ G+ Sbjct: 881 IDGFVKGLKQKWEDGMKFISGIGD----WIREHKGPIRVDRKLLTPAGNAIMNGLNSGLT 936 Query: 11139 KASGLVADSIDGLTDMV 11089 V ++ G+ DM+ Sbjct: 937 GGFRDVQSNVSGMGDMI 953 Score = 60.1 bits (144), Expect = 5e-08 Identities = 101/496 (20%), Positives = 179/496 (36%), Gaps = 44/496 (8%) Frame = -3 Query: 13467 LAEAAGNLNAVAGGSADTFKSVAMVLTQTAGQGKLTTENWNQLSDAIPGASGKIQQALKE 13288 LA G+ A++ ++A V+ G L +NW+ KI + KE Sbjct: 428 LALIGGSFTAISLPVLGIIAAIAAVIAI----GILVYKNWD-----------KISKFGKE 472 Query: 13287 AGAYTGNFRDAMAD------GQITAQEFNDAIMSL-----GFTDAAVEAATSA-STIEGA 13144 A F A+ G IT Q F+D S+ G + ++ A A +++ A Sbjct: 473 VWANVKKFASDAAEVIKEKWGDIT-QWFSDTWKSIKEGAKGLWNGTIQGAKDAVDSVKNA 531 Query: 13143 TGNLEAAFVKLGASVLDSVKPAITGGMSWIADGVTNS----VPVVQAGIQGVIGWFQRLY 12976 ++ F L T G+S D VT + V ++ Q ++ +F L+ Sbjct: 532 WNGIKEWFANLWKGT--------TSGLSSAWDSVTTTLAPFVETIKTIFQPMLDFFSGLW 583 Query: 12975 SKLEENGAITAFKSAWDAIRDAIMGVVNMVVDWVK----------LMPPDGAATAIKLIA 12826 +++ T F SAW+ I+ +MG V +++D + M ATAI+ I Sbjct: 584 GQVK-----TIFGSAWEIIKTVVMGPVLLLIDLITGDFNQFKEDFGMLWQTLATAIQTIV 638 Query: 12825 DT-LNLIVGNAGKLAPVLIPAVTAFLGFKXXXXXXXXXXXGLDGIFXXXXXXXXXXNGVT 12649 T +N++VG ++ T + L G F V Sbjct: 639 QTFVNIVVGLYSSFFQTVVNIWTTIVN----------TIQSLWGAFTTWVVNMAKSI-VD 687 Query: 12648 DLVNGIGGV-SGRIQKIAASTKIAQNA-----QLAWNAVTSAGTAIQRAFNAVLKANPVG 12487 +VNG G + A+ + ++ Q N S I +N+ K V Sbjct: 688 GIVNGWNSFKQGTVDLWNATIQWVKDTWASFKQWVVNMAKSIVDGIVNGWNS-FKQGTVD 746 Query: 12486 FWVTIFATVVAALVWFFTQTEVGRKAWAAFTSW-----------LSETWAALVEGAKAIW 12340 W A + W + WA+F W + W + +G +W Sbjct: 747 LW-------NATIQWV-------KDTWASFKQWVVNMAKSIVDGIVNGWNSFKQGTVDLW 792 Query: 12339 NGLGEFLANLWATITGGVQSAWNGIAGFFTGLWQTISGGVTGAWTSITTFLSGVWTGIGT 12160 N +++ + WA+ V + N I W+ + G W + L G+W G+ Sbjct: 793 NATIQWVKDTWASFKQWVVDSANAIVNGVKQGWKNLKQGTIDLWKGMINGLKGIWDGLKQ 852 Query: 12159 TATTIFNGIRDFIVNV 12112 + + + + ++ N+ Sbjct: 853 SVSDLIDNVKTTFNNL 868 Score = 57.4 bits (137), Expect = 3e-07 Identities = 32/125 (25%), Positives = 55/125 (44%) Frame = -3 Query: 11748 WTAVSQFFTDVWNRIVAFFTPIINGIRNTIGNVLNAISGVWTSVWNAVKSVASAIWNAIS 11569 W +S+F +VW + F + I+ G++ S W S +K A +WN Sbjct: 463 WDKISKFGKEVWANVKKFASDAAEVIKEKWGDITQWFSDTWKS----IKEGAKGLWNG-- 516 Query: 11568 GVVSTCIQNVRNTISTVLNAISGVWTSVWNSVSSFLGNIWHGITSAVSNGIQSVSNTVGR 11389 IQ ++ + +V NA WN + + N+W G TS +S+ SV+ T+ Sbjct: 517 -----TIQGAKDAVDSVKNA--------WNGIKEWFANLWKGTTSGLSSAWDSVTTTLAP 563 Query: 11388 IRDTV 11374 +T+ Sbjct: 564 FVETI 568 >ref|NP_795521.1|putative structural protein Length = 303 Score = 140 bits (352), Expect = 4e-32 Identities = 90/300 (30%), Positives = 149/300 (49%), Gaps = 8/300 (2%) Frame = -1 Query: 17867 MALDTSKV-LLPKEVATVIIKRAKDTSTIAALSPSEPQLFLDKDYMVFTGNSEAEVVAEG 17691 M +TSK L K + + +I + K S++A LS +P F FT +S+ +VVAE Sbjct: 1 MGTETSKASLFDKHLVSDLINKVKGHSSLAKLSSQKPIPFNGSKEFTFTLDSDIDVVAEN 60 Query: 17690 AQKSSYEETLTSVVGKRFKVQTTTRLTDELQWADDDAKLEIISKIQADQAAAMGRVLDYV 17511 +K+ +L V KV+ RL+DE +A ++ K++I+ A + R +D + Sbjct: 61 GKKTHGGLSLEPVTIVPIKVEYGARLSDEFLYATEEEKIDILKAFNEGFAKKLARGIDLM 120 Query: 17510 VYHAFDPKKKTTLE-----GFNALAKTAVGVPATDDRVADIDSLAEAVSD-EYDINGIAL 17349 H +P+ K + F++ V ++D A+I++ + E + G+A+ Sbjct: 121 AMHGINPRTKKASDVIGTNHFDSKVTQVVKFTESEDADANIEAAVNLIQGAEGVVTGLAM 180 Query: 17348 SKTMANELRKIRVPSTGQRFYPEIPISLQVGNLDGIPAATSGTVNGRLVTPATGILAFLG 17169 + L K+ G + YPE+ +++G+ ++ + TV + L +G Sbjct: 181 DTEFSTALAKVTNGEMGPKMYPELAWGANPDSINGLKSSVNTTVGAGADEAESKDLVIIG 240 Query: 17168 DFR-LIRWGMVRDIWSEIIEYGDPDNTGKDLKGVNQIAYRTEAMYSYAILDPKGIAVLKK 16992 DF + +WG + I EII+YGDPDN+GKDLKG NQI R EA + ILD K A + K Sbjct: 241 DFESMFKWGYAKQIPMEIIKYGDPDNSGKDLKGYNQIYLRAEAYIGWGILDAKSFARVTK 300 >ref|NP_852540.1|hypothetical protein Length = 1215 Score = 139 bits (350), Expect = 6e-32 Identities = 168/741 (22%), Positives = 301/741 (40%), Gaps = 30/741 (4%) Frame = -3 Query: 13194 TDAAVEAATSASTIEGA-TGNLEAAFVKLGASVLDSVKPAITGG---MSWIADGVTNSVP 13027 T AAVEA SA G+ G + F +G ++ +++ + S A V NS+ Sbjct: 443 TVAAVEAMKSAIDSLGSYLGTIPGKFSAMGTAIGTALEAGLIKAGQVFSGFAIAVENSLV 502 Query: 13026 VVQAGI----QGVIGWFQRLYSKLEENGAITAFKSAWDAIRDAIMGVVNMVVDWVKLMPP 12859 +++ QG+ G F + AI+ SA+ I A V+ V+D++K+ Sbjct: 503 TIKSKFSEFGQGISGAF---------SSAISGLSSAFSGIGSA----VSPVIDFIKMSFS 549 Query: 12858 DGAATAIKLIADTLNLIVGNAGKLAPV-LIPAVTAFLG---FKXXXXXXXXXXXGLDGIF 12691 T L + L + G PV + A+ LG FK + Sbjct: 550 SIGNTIATLTPLIVRLGLSFLGVSGPVGWVIAIVGSLGATIFKLINTNDQVKSAFMSAWQ 609 Query: 12690 XXXXXXXXXXNGVTDLVNGIG-GVSGRIQKIAASTKIAQNAQLAWNAVTSAGTAIQRAFN 12514 + + +V I G++ +A + A+ Q+ + + G A+ Sbjct: 610 SIQSIFSSVMSAILPVVQSIAQGITQAFAPLAP--EFAKTGQVIAESFATLGPALSELGA 667 Query: 12513 AV--LKANPVGFWVTIFATVVAALVWFFTQTEVGRKAWAAFTSWLSETWAALVEGAKAIW 12340 A L A + + VV + F +A S L + + +++ + Sbjct: 668 AFGELGATIASLFSEVVQAVVPIALDLFRLFGETIQAVVPLASDLFKLFGQVIQEVMPMI 727 Query: 12339 NGLGEFLANLWATITGGVQSAWNGIAGFFTGLWQT---------------ISGGVTGAWT 12205 L + A+ I + A +A FT L T I + A++ Sbjct: 728 TELIQMFADTTIEIMPVITEAIQQVAQIFTELASTVLPIFAQAFQTAFPIILQVIQAAFS 787 Query: 12204 SITTFLSGVWTGIGTTATTIFNGIRDFIVNVFTVIGALIVAPLQAIQNGIDTVFGWILSF 12025 + G + AT++ I + VF VI +I A + ++ I + G ++S Sbjct: 788 IAGMLIQGFGEVLSIIATSVIPIILQAVQAVFPVIAGIIAAAI-SVAIPIIQLLGQVISI 846 Query: 12024 ITQQMNSTNTVWSTVWTAIYNVVSTIFTLISGYISTVVNAIRTVIVVFLDLLKGDWQGAW 11845 I +TV I +V +F +I I + ++ ++KG A Sbjct: 847 IA----------NTVIPLILQIVQAVFPVIVSIIQAAIPVATAILEGLATIIKGVVIPAI 896 Query: 11844 DAIKSFFTTTWDGIKAFLSNVLDGIKSIWTSVWTAVSQFFTDVWNRIVAFFTPIINGIRN 11665 I S + I +++ + I +I + + ++ WN + + +++ I N Sbjct: 897 QFILSIVQAVFPAIMGVITSAIGIITNIIKLFTSVLKGDWSGAWNAVKGITSSVMSLIGN 956 Query: 11664 TIGNVLNAISGVWTSVWNAVKSVASAIWNAISGVVSTCIQNVRNTISTVLNAISGVWTSV 11485 I +N IS V T N VKS+ S++ +AI +VS+ + + IS+V+NA + +S+ Sbjct: 957 IIQGAINLISAVVTGGLNLVKSIFSSVLSAIGSLVSSIFSGIGSVISSVMNAAGSIISSI 1016 Query: 11484 WNSVSSFLGNIWHGITSAVSNGIQSVSNTVGRIRDTVLGAVSGAGGWLYDTGRQIISGLI 11305 WN+ S A SN + S+ NTV +I V +SG L G+ ++ GL+ Sbjct: 1017 WNAAKS-----------ATSNILNSIYNTVTQIFGNVKSFLSGID--LGSIGKNMMQGLL 1063 Query: 11304 NGIGGAFQWVRNTISNLGSSLVGWAKGVLGIHSPSRIFRDEVGKWIPAGMAQGIDKASGL 11125 NGI + + I+++G+ + G+L IHSPSR FRD +G + G GID G Sbjct: 1064 NGISSMAGAIWDKITDIGNGIKDKISGLLSIHSPSRWFRDFIGVNMMKGWINGIDAMKGA 1123 Query: 11124 VADSIDGLTDMVPTVSLKTDT 11062 V + + +T+ + +L+ +T Sbjct: 1124 VQRTTEQMTEWMKPEALQVET 1144 Score = 75.9 bits (185), Expect = 9e-13 Identities = 158/820 (19%), Positives = 281/820 (34%), Gaps = 47/820 (5%) Frame = -3 Query: 13557 DYADKTVYDLNDIRNTTAQLAANGVPNYDRLAEAAGNLNAVA------GGSADTFKSVAM 13396 D A +VY + A++ A G + + G L+A A G ADT S Sbjct: 50 DMAKDSVYSTGQVAAAFAEMGAKGFDSAQATSALPGVLSAAAASGEDLGMVADTITSALN 109 Query: 13395 VLTQTAGQGKLTTENWNQLSDAIPGASGKIQQALKEAGAYTGNFRDAMADGQITAQEFND 13216 A Q + ++A G +Q A K A +M + + ++ Sbjct: 110 SFGMEASQSTHVADVLATAANATAAGVGDMQYAFKYAAGPAAQLGISMEELAASVGIMSN 169 Query: 13215 AIMSLGFTDAAVEAATSASTIEGATGNLEAA--FVKLGASVLD---SVKPA------ITG 13069 + G A AS + AA +LG S+ D ++KP + Sbjct: 170 S----GIKGETAGTALRASLLRLVKPPKTAANELKRLGVSITDQQGNMKPLSQIIGELKS 225 Query: 13068 GMSWIADGVTNSVPVVQAGIQGVIGWFQRLYSKLEENGAIT--------AFKSAWDAIRD 12913 GM + + G + V G + + E+ A+T A K A D++ + Sbjct: 226 GMEGMTSAQKGAALATIFGTEAVSGMMALVAAGPEKIEALTQSLVKSDGASKKAADSMLE 285 Query: 12912 AIMGVVNMV---VDWVKLMPPDGAATAIKLIADTLNLIVGNAGKL-APV--LIPAVTAFL 12751 G + + +D D A A+ +A + + KL APV +I +V AF Sbjct: 286 GWAGALTKMESSLDAAARAFTDALAPALMAVAGVVETLANAFMKLPAPVQTVIASVVAFT 345 Query: 12750 GFKXXXXXXXXXXXGLDGIFXXXXXXXXXXNGVTDLVNGIGGVSGRIQKIAASTKIAQNA 12571 + GI ++N IGG I Sbjct: 346 -------TAFLVIATVAGI----------------VINAIGGAI-----------ITLGQ 371 Query: 12570 QLAWNAVTSAGTAIQRAFNAVLKAN------PVGFWVTIFATVVAALVWFFTQTEVGRKA 12409 + W + TS G + RA + L+A PVG + I + V ALV + E R A Sbjct: 372 LMLWMSGTSKGAVMLRAALSALRAGFALLLGPVGAVIAILSLVGVALVQLYKHNETFRNA 431 Query: 12408 WAAFTSWLSETWAALVEGAKAIWNGLGEFLANLWATITGGVQSAWNGIAGFFTGLWQTIS 12229 + A VE K+ + LG +L I G F+ + I Sbjct: 432 VNNAWESIKSGTVAAVEAMKSAIDSLGSYLGT---------------IPGKFSAMGTAIG 476 Query: 12228 GGVTGAWTSITTFLSGVWTGIGTTATTIFNGIRDFIVNVFTVIGALIVAPLQAIQNGIDT 12049 + SG + + TI + +F + + I + L + +GI + Sbjct: 477 TALEAGLIKAGQVFSGFAIAVENSLVTIKSKFSEFGQGISGAFSSAI-SGLSSAFSGIGS 535 Query: 12048 VFGWILSFITQQMNSTNTVWSTVWTAIYNVVSTIFTLISGYISTVVNAIRTVIVVFLDLL 11869 ++ FI +S +T+ I + F +SG + V+ + ++ L+ Sbjct: 536 AVSPVIDFIKMSFSSIGNTIATLTPLIVRL-GLSFLGVSGPVGWVIAIVGSLGATIFKLI 594 Query: 11868 KGDWQGAWDAIKSFFTTTWDGIKAFLSNVLDGIKSIWTSVWTAVSQFFT----------D 11719 + D +KS F + W I++ S+V+ I + S+ ++Q F Sbjct: 595 NTN-----DQVKSAFMSAWQSIQSIFSSVMSAILPVVQSIAQGITQAFAPLAPEFAKTGQ 649 Query: 11718 VWNRIVAFFTPIINGIRNTIGNVLNAISGVWTSVWNAVKSVASAIWNAISGVVSTCIQNV 11539 V A P ++ + G + I+ +++ V AV +A ++ + + Sbjct: 650 VIAESFATLGPALSELGAAFGELGATIASLFSEVVQAVVPIALDLFRLFGETIQAVVPLA 709 Query: 11538 RNTISTVLNAISGVWTSVWNSVSSFLGNIWHGITSAVSNGIQSVSNTVGRIRDTVLGAVS 11359 + I V + + F I ++ IQ V+ + TVL + Sbjct: 710 SDLFKLFGQVIQEVMPMITELIQMFADTTIE-IMPVITEAIQQVAQIFTELASTVLPIFA 768 Query: 11358 GAGGWLYDTGRQIISGLINGIGGAFQWVRNTISNLGSSLV 11239 A + Q+I + G Q +S + +S++ Sbjct: 769 QAFQTAFPIILQVIQAAFSIAGMLIQGFGEVLSIIATSVI 808 Score = 41.2 bits (95), Expect = 0.023 Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 6/154 (3%) Frame = -3 Query: 11646 NAISGVWTSVWNAVKSVASAIWNAISGVVSTCIQNVRNTISTVLNAISGVWTSVWNSVSS 11467 NA++ W S+ + + A+ +AI + S + T+ S + T++ ++ + Sbjct: 430 NAVNNAWESIKSGTVAAVEAMKSAIDSLGSY--------LGTIPGKFSAMGTAIGTALEA 481 Query: 11466 FL---GNIWHGITSAVSNGIQSVSNTVGRIRDTVLGAVSGAGGWLYDTGRQI---ISGLI 11305 L G ++ G AV N + ++ + + GA S A L I +S +I Sbjct: 482 GLIKAGQVFSGFAIAVENSLVTIKSKFSEFGQGISGAFSSAISGLSSAFSGIGSAVSPVI 541 Query: 11304 NGIGGAFQWVRNTISNLGSSLVGWAKGVLGIHSP 11203 + I +F + NTI+ L +V LG+ P Sbjct: 542 DFIKMSFSSIGNTIATLTPLIVRLGLSFLGVSGP 575 >ref|NP_862873.1|gp34 Length = 410 Score = 134 bits (336), Expect = 3e-30 Identities = 98/337 (29%), Positives = 160/337 (47%), Gaps = 1/337 (0%) Frame = -1 Query: 21206 HYARNMLRAEYYQARYRYNGVAYSIPKQMRALAKPMIGWPNKAVRALADLNVFEGFDAPD 21027 + +R LR ++Y ++ +IP +RA + ++GW K V +LAD +F F D Sbjct: 4 YQSRVNLRYKHYAMQHYEAPTGITIPAHIRAKYQAVLGWAAKGVDSLADRLIFRAFANDD 63 Query: 21026 PLQAQVDELVDDNAWDTDVSEAITSAYIHGCSFITVCEDPDEPGRILMLPRSADWSAGVW 20847 V E+ D N D AI SA I CSF+ + + D+ R+ ++ S + GV Sbjct: 64 ---FNVTEIFDRNNPDIFFDSAILSALIGSCSFVYISKGEDDEVRLQVIESSN--ATGVI 118 Query: 20846 DRRRRRLGSALTITDKDDRTGRITAFTAWLPGKVYEIDDSEGQWTARTIETHLDRPSVVP 20667 D L + +DD R T + P + I +G+ + T ET + P +VP Sbjct: 119 DPITGLLVEGYAVLARDDYN-RPTLEAYFEPNATHFIP-KDGEPYSVTNETGI--PLLVP 174 Query: 20666 LVNDAQSYHPLGNSRITRTLMNLTDFGLRTMVRMEATAEFYAAPRVWFIGASKKFTD-DT 20490 +++ + P G SRITR M + RT+ R + TAEFY+ P+ + +G + Sbjct: 175 VIHRPDAVRPFGRSRITRAGMYYQKYAKRTLERADITAEFYSWPQKYILGLDPDAEPMEK 234 Query: 20489 WSSIVSVMNGMPANKNGDKPTMQQLQQASMTPHADMLRTIALMVSSETDIPVNDLGITMD 20310 W + VS + + ++ G KP++ Q ASM+P + LRT A + E + ++DLG D Sbjct: 235 WKATVSSLLTISSSDKGVKPSVGQFTTASMSPFTEQLRTAAAGFAGEMGLTLDDLGFVSD 294 Query: 20309 NPASAEAMAEAERKLSRTADRQNKRFGRALKEAMSIA 20199 NP+S EA+ + L + + G L +A Sbjct: 295 NPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYVA 331 >ref|NP_862879.1|gp40 Length = 300 Score = 128 bits (321), Expect = 1e-28 Identities = 90/291 (30%), Positives = 145/291 (49%), Gaps = 7/291 (2%) Frame = -1 Query: 17843 LLPKEVATVIIKRAKDTSTIAALSPSEPQLFLDKDYMVFTGNSEAEVVAEGAQKSSYEET 17664 L E+ T +I + K S+IA LSP +P F + VF +S+ ++VAE +K+ + Sbjct: 11 LFNPELVTKVINKVKGHSSIAKLSPQKPIPFNGQREFVFDFDSDIDIVAENGKKTHGGVS 70 Query: 17663 LTSVVGKRFKVQTTTRLTDELQWADDDAKLEIISKIQADQAAAMGRVLDYVVYHAFDPKK 17484 L V KV+ R++DE A ++AK+++++ + + R LD + H +P+ Sbjct: 71 LDPVTIVPLKVEYGARVSDEFLHASEEAKVDMLTDFVEGFSKKLARGLDIMSIHGINPRT 130 Query: 17483 K--TTLEGFNALAKTAVGVPATDDRVADIDSLAEAV----SDEYDINGIALSKTMANELR 17322 K +T+ G N K D D +S+ +AV E DI G L L Sbjct: 131 KQASTIIGDNCFDKKVTQTVPFKDTNPD-ESMEDAVGMIDGSERDITGAILDPIFTTALS 189 Query: 17321 KIRVPSTGQRFYPEIPISLQVGNLDGIPAATSGTVNGRLVTPATGILAFLGDFR-LIRWG 17145 K++ + G + YPE+ ++G+ + TV+ P A +GDF + +WG Sbjct: 190 KMK-NAEGGKLYPELAWGGVPDAINGLAVDKNRTVSYSQTDPKN--TAIVGDFETMFKWG 246 Query: 17144 MVRDIWSEIIEYGDPDNTGKDLKGVNQIAYRTEAMYSYAILDPKGIAVLKK 16992 +++ EII+YGDPDN+G+DLKG NQI R EA + I+D A + K Sbjct: 247 YAKEVPMEIIKYGDPDNSGRDLKGYNQIYIRCEAYIGWGIMDAASFARIVK 297 >ref|NP_817551.1|gp102 Length = 146 Score = 126 bits (316), Expect = 6e-28 Identities = 65/130 (50%), Positives = 86/130 (66%) Frame = -2 Query: 30811 IVGNLTADPELRTTGTGTQVCGFTIASTPRVWNRQANQYEDGQSLFMRCSAWRDLAGHCA 30632 +VG LTADPELR T G V FT+ S R + Q N + DG + F+RC+ WRD A + A Sbjct: 9 LVGTLTADPELRFTQGGQAVANFTVVSNERRRDAQGN-WVDGDATFLRCTIWRDAAENVA 67 Query: 30631 QSLSKGMRVIATGRLSQRSYQAQDGTNRTVVEMTVDEIGPSLRYATAQVTKQGGHDGCQG 30452 +SL KG RVI G L QRS++ ++G RTV+E+ VDEIGPSLR+ATA+V+K GG+ G Sbjct: 68 ESLQKGQRVIVHGYLKQRSFETKEGDKRTVIEVEVDEIGPSLRWATARVSKVGGNSNGGG 127 Query: 30451 GSTYGNPAGN 30422 S++ N Sbjct: 128 SSSFKEADAN 137 Score = 122 bits (306), Expect = 8e-27 Identities = 60/118 (50%), Positives = 87/118 (73%) Frame = -3 Query: 74169 MAGETVITIVGNLTADPELRTIGSGATVASFTIASTPRTWNRQTNQFEDGQALFMRCSAW 73990 M+ + + +VG LTADPELR G VA+FT+ S R + Q N + DG A F+RC+ W Sbjct: 1 MSKDLQVHLVGTLTADPELRFTQGGQAVANFTVVSNERRRDAQGN-WVDGDATFLRCTIW 59 Query: 73989 RDLADHCAQSLKKGMRVIATGRLQQRSYQAQDGSQRTVVEMQLDEIGPSLRYATAQVT 73816 RD A++ A+SL+KG RVI G L+QRS++ ++G +RTV+E+++DEIGPSLR+ATA+V+ Sbjct: 60 RDAAENVAESLQKGQRVIVHGYLKQRSFETKEGDKRTVIEVEVDEIGPSLRWATARVS 117 >ref|NP_039678.1|predicted 53.7Kd protein Length = 486 Score = 124 bits (312), Expect = 2e-27 Identities = 112/406 (27%), Positives = 182/406 (44%), Gaps = 18/406 (4%) Frame = -1 Query: 21269 IKGVEDDDMPTI--QKLLTTWRDHYARNMLRAEYYQARYRYNGVAYSIPKQMRALAKPMI 21096 + G+E+ + P + +++++ + D YY A R + ++P++M+ L + Sbjct: 5 LPGMEEIEDPAVVREEMISAFEDASKDLASNTSYYDAERRPEAIGVTVPREMQQLLAH-V 63 Query: 21095 GWPNKAVRALADLNVFEGFDAPDPLQAQVD--ELVDDNAWDTDVSEAITSAYIHGCSFIT 20922 G+P V ++A+ EGF D +A + + N D + T AY+HG SFIT Sbjct: 64 GYPRLYVDSVAERQAVEGFRLGDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSFIT 123 Query: 20921 VCE-DP------DEPGRILMLPRSADWSAGVWDRRRRRLGSALTITDKDDRTGRITAFTA 20763 + + DP D+ I+ + A + D R R+ A+ + D I A T Sbjct: 124 ISKPDPQLDLGWDQNVPIIRVEPPTRMHAEI-DPRINRVSKAIRVA-YDKEGNEIQAATL 181 Query: 20762 WLPGKVYEIDDSEGQWTARTIETH-LDRPSVVPLVNDAQSYHPLGNSRITRTLMNLTDFG 20586 + P + ++G+W H L VVPL N + G S IT L ++TD Sbjct: 182 YTPMETIGWFRADGEWAEWFNVPHGLGVVPVVPLPNRTRLSDLYGTSEITPELRSMTDAA 241 Query: 20585 LRTMVRMEATAEFYAAPRVWFIGASKK---FTDDTWSSIVSVMNGMPANKNGDKPTMQQL 20415 R ++ M+ATAE P+ G + +T ++ + +QQ Sbjct: 242 ARILMLMQATAELMGVPQRLIFGIKPEEIGVDSETGQTLFDAYLARILAFEDAEGKIQQF 301 Query: 20414 QQASMTPHADMLRTIALMVSSETDIPVNDLGITMDNPASAEAMAEAERKLSRTADRQNKR 20235 A + + L IA V++ T +P L DNPASAEA+ AE +L + +R+N Sbjct: 302 SAAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNLM 361 Query: 20234 FGRALKEAMSIAL-AYQGAD--PDALRELRPIWAPVKETSDAARAD 20106 FG A +EAM IA +G D PD LR + +W + AA+AD Sbjct: 362 FGGAWEEAMRIAYRIMKGGDVPPDMLR-METVWRDPSTPTYAAKAD 406 >ref|NP_046829.1|gp14 Length = 485 Score = 124 bits (312), Expect = 2e-27 Identities = 112/405 (27%), Positives = 177/405 (43%), Gaps = 17/405 (4%) Frame = -1 Query: 21269 IKGVEDDDMPTIQK--LLTTWRDHYARNMLRAEYYQARYRYNGVAYSIPKQMRALAKPMI 21096 + G E+ P I + +++ + D YY+A R + ++P QM++L + Sbjct: 5 LPGQEEIADPAIARDEMVSAFEDQNQNLRSNTSYYEAERRPEAIGVTVPVQMQSLLAH-V 63 Query: 21095 GWPNKAVRALADLNVFEGFDAPDPLQAQVD--ELVDDNAWDTDVSEAITSAYIHGCSFIT 20922 G+P V ++A+ EGF D +A + + N D + T AY+HG S+IT Sbjct: 64 GYPRLYVDSIAERQAVEGFRLGDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYIT 123 Query: 20921 VCE-DPD-----EPGRILMLPRSADWSAGVWDRRRRRLGSALTITDKDDRTGRITAFTAW 20760 + DP +P L+ D R R A+ + D I A T + Sbjct: 124 ISRPDPQIDLGWDPNVPLIRVEPPTRMYAEIDPRIGRPAKAIRVA-YDAEGNEIQAATLY 182 Query: 20759 LPGKVYEIDDSEGQWTARTIETH-LDRPSVVPLVNDAQSYHPLGNSRITRTLMNLTDFGL 20583 P + + +EG+W + H L VVPL N + G S IT L ++TD Sbjct: 183 TPNETFGWFRAEGEWVEWFSDPHGLGAVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAA 242 Query: 20582 RTMVRMEATAEFYAAPRVWFIGASKK---FTDDTWSSIVSVMNGMPANKNGDKPTMQQLQ 20412 R ++ M+ATAE P+ G + +T ++ + +QQ Sbjct: 243 RILMLMQATAELMGVPQRLIFGIKPEEIGVDPETGQTLFDAYLARILAFEDAEGKIQQFS 302 Query: 20411 QASMTPHADMLRTIALMVSSETDIPVNDLGITMDNPASAEAMAEAERKLSRTADRQNKRF 20232 A + + L IA V++ T +P L DNPASAEA+ AE +L + +R+N F Sbjct: 303 AAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNAIF 362 Query: 20231 GRALKEAMSIAL-AYQGAD--PDALRELRPIWAPVKETSDAARAD 20106 G A +EAM +A +G D PD LR + +W + AA+AD Sbjct: 363 GGAWEEAMRLAYRLMKGGDVPPDMLR-METVWRDPSTPTYAAKAD 406 >ref|NP_695057.1|putative terminase Length = 469 Score = 124 bits (312), Expect = 2e-27 Identities = 111/425 (26%), Positives = 186/425 (43%), Gaps = 5/425 (1%) Frame = -2 Query: 22678 WQRQINRIILAKSADGFWSARNTVLSIPRQTGKTYDIGWVAIHRAARTPGMRIVWTAQHF 22499 WQ+ + + ++A DG W+ + SIPR+ GKT +I ++ + + G+ I+ TA Sbjct: 42 WQKNLLKEVMAIDEDGLWTHQKFGYSIPRRNGKT-EIVYI-LELWSLVQGLSILHTAHRI 99 Query: 22498 SVIKDTFESLCAIVLRPEMSGLVDPDHGISLAA-GKEEIRF-RNGSRIFFRARERGALRG 22325 S ++E L + E SG V+ + S+ A G+E + +G I FR R G Sbjct: 100 STSHSSYEKLKKYL---EDSGYVEGEDFKSIKAKGQERLELIESGGVIQFRTRTSSGGLG 156 Query: 22324 VKKIALLVIDEAQHLSDSAMASMLPTQNRAWNPQTIYMGTPPGPRDNGEAFTRLRDKARA 22145 + +LVIDEAQ + +++ T + NP TI GTPP P +G FT RD A Sbjct: 157 -EGFDILVIDEAQEYTTEQESALKYTVTDSDNPMTIMCGTPPTPVSSGTVFTNYRDNTIA 215 Query: 22144 GRTHSTLYVEFTADRDADPLDRQQWRKANPSYPSHTSDESI-ANLWENLTGDDFRREALG 21968 G+ + + E++ + D D + W +NPS H ++ I A L E+ + +R LG Sbjct: 216 GKAKYSGWAEWSVEDVKDIHDVEAWYNSNPSMGYHLNERKIEAELGEDKLDHNVQR--LG 273 Query: 21967 IWDEHALSRAIDRRQWEEATIERRRP-GGVMSFGIDMNPQRTRLTIGACMRYDDNTAHIE 21791 W ++ I ++W + R G + GI + + ++ +E Sbjct: 274 YWPKYNQKSVISEQEWNALKVNRLPVIKGKLFVGIKYGNDGANVAMSIAVKTLSGKVFVE 333 Query: 21790 LAEYRDTNQDGTMWAVNLIDKVWEQTASLVIDGQSPATALLPDL-XXXXXXXXXXXXTDM 21614 + + ++G W +N + K +VIDGQS + L ++ ++ Sbjct: 334 TIDCQSI-RNGNQWIINFLKKA--DVEKVVIDGQSGQSILTSEMKDFKLKEPILPTVKEI 390 Query: 21613 GRACGRLQDMLRDGTLTHLPEDGQQPLWQAAAKATTRPIGKNGLFGWNRPDDDTDISPLN 21434 A + + H GQ L R IG +G FG+ DD DIS ++ Sbjct: 391 INANSLWEQGIFQKNFCH---SGQPSLSTVVTNCDKRNIGTSGGFGYKSQFDDMDISLMD 447 Query: 21433 AVTLA 21419 + LA Sbjct: 448 SALLA 452 >ref|NP_996704.1|large subunit terminase Length = 469 Score = 124 bits (311), Expect = 2e-27 Identities = 112/425 (26%), Positives = 185/425 (43%), Gaps = 5/425 (1%) Frame = -2 Query: 22678 WQRQINRIILAKSADGFWSARNTVLSIPRQTGKTYDIGWVAIHRAARTPGMRIVWTAQHF 22499 WQ+ + + I+A DG W+ + SIPR+ GKT +I ++ + A G+ I+ TA Sbjct: 42 WQKNLLKEIMAIDEDGLWTHQKFGYSIPRRNGKT-EIVYI-LELWALEQGLSILHTAHRI 99 Query: 22498 SVIKDTFESLCAIVLRPEMSGLVDPDHGISLAA-GKEEIRF-RNGSRIFFRARERGALRG 22325 S ++E L + E SG V+ + S+ A G+E + +G I FR R G Sbjct: 100 STSHSSYEKLKKYL---EDSGYVEGEDFKSIKAKGQERLELIESGGVIQFRTRTSSGGLG 156 Query: 22324 VKKIALLVIDEAQHLSDSAMASMLPTQNRAWNPQTIYMGTPPGPRDNGEAFTRLRDKARA 22145 + +L IDEAQ + +++ T + NP TI GTPP P +G FT RD A Sbjct: 157 -EGFDILFIDEAQEYTTEQESALKYTVTDSDNPMTIMCGTPPTPVSSGTVFTNYRDNTLA 215 Query: 22144 GRTHSTLYVEFTADRDADPLDRQQWRKANPSYPSHTSDESI-ANLWENLTGDDFRREALG 21968 G+ + + E++ + D D + W +NPS H ++ I A L E+ + +R LG Sbjct: 216 GKAKYSGWAEWSVEDVKDIHDVEAWYNSNPSMGYHLNERKIEAELGEDKLDHNVQR--LG 273 Query: 21967 IWDEHALSRAIDRRQWEEATIERRRP-GGVMSFGIDMNPQRTRLTIGACMRYDDNTAHIE 21791 W ++ I ++W + R G + GI + + ++ +E Sbjct: 274 YWPKYNQKSVISEQEWNALKVNRLPVIKGKLFVGIKYGNDGANVAMSIAVKTLSGKVFVE 333 Query: 21790 LAEYRDTNQDGTMWAVNLIDKVWEQTASLVIDGQSPATALLPDL-XXXXXXXXXXXXTDM 21614 + + ++G W +N + K +VIDGQS + L ++ ++ Sbjct: 334 TIDCQSI-RNGNQWIINFLKKA--DVEKVVIDGQSGQSILTSEMKDFKLKEPILPTVKEI 390 Query: 21613 GRACGRLQDMLRDGTLTHLPEDGQQPLWQAAAKATTRPIGKNGLFGWNRPDDDTDISPLN 21434 A + + H GQ L R IG +G FG+ DD DIS ++ Sbjct: 391 INANSLWEQGIFQKNFCH---SGQPSLSTVVTNCDKRNIGTSGGFGYKSQFDDMDISLMD 447 Query: 21433 AVTLA 21419 + LA Sbjct: 448 SALLA 452 >ref|NP_996706.1|major head protein Length = 298 Score = 121 bits (303), Expect = 2e-26 Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 16/291 (5%) Frame = -1 Query: 17843 LLPKEVATVIIKRAKDTSTIAALSPSEPQLFLDKDYMVFTGNSEAEVVAEGAQKSSYEET 17664 L E+ T +I + S+IA LS +P F + FT +SE +VVAE +K+ T Sbjct: 8 LFDPELVTDLISKVAGKSSIARLSAQKPIPFNGEKVFTFTMDSEIDVVAESGKKTHGGVT 67 Query: 17663 LTSVVGKRFKVQTTTRLTDELQWADDDAKLEIISKIQADQAAAMGRVLDYVVYHAFDPKK 17484 L KV+ R++DE +A D+ K+ I+ A + R +D + +H +P+ Sbjct: 68 LAPQTMVPIKVEYGARISDEFMYASDEEKINILQAFNDGFAKKVARGIDLMAFHGVNPRL 127 Query: 17483 KTTLEGFNALAKTAVGVPATDDRVADIDSLAEAVSD---------------EYDINGIAL 17349 T A +G D +V ++D + D+ GIA+ Sbjct: 128 GT--------ASAVIGTNHFDSKVTQKVEAPRGIADPNGAIENAVELLTGVDADVTGIAI 179 Query: 17348 SKTMANELRKIRVPSTGQRFYPEIPISLQVGNLDGIPAATSGTVNGRLVTPATGILAFLG 17169 + + + L K + G +PE+ ++G+P + TV+ +T A +G Sbjct: 180 NPSFRSALAK-QKDLQGNALFPELKWGATPDTINGLPVDVNKTVSDMSLTQRD--RAIIG 236 Query: 17168 DF-RLIRWGMVRDIWSEIIEYGDPDNTGKDLKGVNQIAYRTEAMYSYAILD 17019 DF +WG +++ E+I+YGDPDN+G DLKG NQ+ R E + ILD Sbjct: 237 DFANGFKWGYAKEVPLEVIQYGDPDNSGLDLKGYNQVYIRAELFLGWGILD 287 >ref|NP_795519.1|putative terminase Length = 471 Score = 120 bits (301), Expect = 3e-26 Identities = 118/443 (26%), Positives = 184/443 (41%), Gaps = 8/443 (1%) Frame = -2 Query: 22678 WQRQINRIILAKSADGFWSARNTVLSIPRQTGKT---YDIGWVAIHRAARTPGMRIVWTA 22508 WQ + I+A +G W + +IPR+ GKT Y + A+H+ G++I+ TA Sbjct: 44 WQVNMLIPIMAIDENGLWVHQKYGYAIPRRNGKTEVVYIVELWALHK-----GLKILHTA 98 Query: 22507 QHFSVIKDTFESLCAIVLRPEMSGLVDPDHGIS-LAAGKEEIRFR-NGSRIFFRARERGA 22334 S +FE + + EMSG VD + IS A G+E I F+ +G+ I FR R Sbjct: 99 HRISTSHASFEKVKKYL---EMSGYVDGEDFISNKAKGQERIEFKASGAVIQFRTRTSNG 155 Query: 22333 LRGVKKIALLVIDEAQHLSDSAMASMLPTQNRAWNPQTIYMGTPPGPRDNGEAFTRLRDK 22154 G + LL+IDEAQ + +++ T + NP TI GTPP G F R Sbjct: 156 GLG-EGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMTIMCGTPPTMVSTGTVFEAYRKD 214 Query: 22153 ARAGRTHSTLYVEFTADRDADPLDRQQWRKANPSYPSHTSDESI-ANLWENLTGDDFRRE 21977 G + + E++ D W +NPS H ++ I A L E+ + +R Sbjct: 215 CLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEAELGEDEIDHNIQR- 273 Query: 21976 ALGIWDEHALSRAIDRRQWEEATIER-RRPGGVMSFGIDMNPQRTRLTIGACMRYDDNTA 21800 LG W I ++W + +E+ + GI +++ R +N Sbjct: 274 -LGYWPSFNQKSVISEKEWAKLKVEQVPELKSKLFVGIKFGQDGNNVSLSIAARTSENKV 332 Query: 21799 HIELAEYRDTNQDGTMWAVNLIDKVWEQTASLVIDGQSPATALLPDL-XXXXXXXXXXXX 21623 +E + ++GT W +N + A +VIDG S L ++ Sbjct: 333 FVETIDCLSV-RNGTQWIINFLKSA--DIAKVVIDGASGQELLAQEMKEQGLKKPELPKV 389 Query: 21622 TDMGRACGRLQDMLRDGTLTHLPEDGQQPLWQAAAKATTRPIGKNGLFGWNRPDDDTDIS 21443 ++ A + + T+ H Q L R IG NG FG+ DD DIS Sbjct: 390 AEIITANMMWEQGIMQETICH---SDQPSLTAVVTNCEKRQIGSNGGFGYKSLYDDRDIS 446 Query: 21442 PLNAVTLALHGAMTTRRDPTQET 21374 +++ LA TT+ Q T Sbjct: 447 LMDSALLAHWICYTTKPKRKQRT 469 >ref|NP_862877.1|gp38 Length = 459 Score = 120 bits (301), Expect = 3e-26 Identities = 115/428 (26%), Positives = 185/428 (43%), Gaps = 8/428 (1%) Frame = -2 Query: 22678 WQRQINRIILAKSADGFWSARNTVLSIPRQTGKT--YDIGWV-AIHRAARTPGMRIVWTA 22508 WQ+ + ++A +G W + SIPR+ GK+ IG + +H G+ I+ TA Sbjct: 43 WQKNLLLPMMAVDKNGLWVHQKFGYSIPRRNGKSELLYIGEIWGLHE-----GLNILHTA 97 Query: 22507 QHFSVIKDTFESLCAIVLRPEMSGLVDPDHGISLAA-GKEEIR-FRNGSRIFFRARERGA 22334 S +FE + + E G VD + S+ A G+E I + G I FR R Sbjct: 98 HRISTSHASFEKVKRYL---EKMGYVDGEDFNSIRAKGQERIELYSTGGVIQFRTRTSNG 154 Query: 22333 LRGVKKIALLVIDEAQHLSDSAMASMLPTQNRAWNPQTIYMGTPPGPRDNGEAFTRLRDK 22154 G + +L+IDEAQ + +++ T + NP TI GTPP P +G FT+ R+ Sbjct: 155 GLG-EGFDMLIIDEAQEYTTEQESALKYTVTDSENPITIMCGTPPTPVSSGTVFTKYRET 213 Query: 22153 ARAGRTHSTLYVEFTADRDADPLDRQQWRKANPSYPSHTSDESI-ANLWENLTGDDFRRE 21977 G+ + + E++ + + D + W +NPS H ++ I A L E+ + +R Sbjct: 214 CLFGKGKYSGWAEWSVSDEKEIDDVEAWYNSNPSMGYHLNERKIEAELGEDKLDHNIQR- 272 Query: 21976 ALGIWDEHALSRAIDRRQWEEATIER-RRPGGVMSFGIDMNPQRTRLTIGACMRYDDNTA 21800 LG W + AI +W E ++ G +S GI T + + R +D Sbjct: 273 -LGFWPTYNQKSAISETEWNELKMDDIPELSGKLSVGIKYGQDGTNVAMSIAARTNDGRF 331 Query: 21799 HIELAEYRDTNQDGTMWAVNLIDKVWEQTASLVIDGQSPATALLPDLXXXXXXXXXXXXT 21620 +E + + ++G W V + + A +VIDG S L +L Sbjct: 332 FVETVDCQSV-RNGNEWMVAFLRQA--DVAQIVIDGASGQKILDEELKDYRIKNVILPTV 388 Query: 21619 DMGRACGRLQDM-LRDGTLTHLPEDGQQPLWQAAAKATTRPIGKNGLFGWNRPDDDTDIS 21443