Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig27

Genome size:  2409
Host's GC content:  63.84
Predicted Codon Position GC:  	1st:  66.16	 2nd:  43.94	 3rd:  75.72

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig28

Genome size:  2241
Host's GC content:  61.98
Predicted Codon Position GC:  	1st:  65.02	 2nd:  43.43	 3rd:  72.57

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig29

Genome size:  1925
Host's GC content:  64.05
Predicted Codon Position GC:  	1st:  66.29	 2nd:  43.99	 3rd:  76.08

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig30

Genome size:  3068
Host's GC content:  61.28
Predicted Codon Position GC:  	1st:  64.59	 2nd:  43.24	 3rd:  71.38

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig31

Genome size:  5747
Host's GC content:  58.87
Predicted Codon Position GC:  	1st:  63.10	 2nd:  42.59	 3rd:  67.30

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig32

Genome size:  10661
Host's GC content:  62.05
Predicted Codon Position GC:  	1st:  65.06	 2nd:  43.45	 3rd:  72.69

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig33

Genome size:  11032
Host's GC content:  68.97
Predicted Codon Position GC:  	1st:  69.32	 2nd:  45.32	 3rd:  84.40

 >PredictedProphage1 
 Length:   10873 
 Number of hits =   15 
 GC	Coding	First	Second	Third
 69.05 	 69.84 	 71.74 	 47.22 	 90.56 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 6	866	-1	ref|NP_046778.1|gpFI 	363bits(931)	1e-100
 1008	1202	-1	ref|YP_003961.1|hypothetical protein	45.1bits(105)	2e-04
 3416	3748	-1	ref|NP_878217.1|gpH 	74.3bits(181)	2e-13
 4270	4704	-1	ref|NP_490618.1|hypothetical protein	129bits(323)	9e-30
 4709	5605	-1	ref|NP_046773.1|gpJ 	262bits(669)	6e-70
 5629	5964	-1	ref|NP_490616.1|predicted baseplate	122bits(306)	8e-28
 6015	6494	-1	ref|NP_490615.1|predicted baseplate	153bits(386)	4e-37
 6588	7034	-1	ref|NP_490613.1|predicted tail completion	144bits(364)	2e-34
 7054	7557	-1	ref|NP_490612.1|predicted tail completion	202bits(515)	5e-52
 7751	7924	-1	ref|NP_490611.1|hypothetical protein	73.2bits(178)	6e-13
 8267	9088	-1	ref|NP_490609.1|hypothetical protein	307bits(786)	2e-83
 9106	9405	-1	ref|NP_599081.1|holin 	58.2bits(139)	2e-08
 9432	9638	-1	ref|NP_490606.1|hypothetical protein	95.9bits(237)	8e-20
 9641	10102	-1	ref|NP_490604.1|predicted capsid completion protein	132bits(331)	1e-30
 10210	10878	-1	ref|NP_490603.1|predicted terminase subunit	271bits(693)	1e-72
 


Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig34

Genome size:  17428
Host's GC content:  63.50
Predicted Codon Position GC:  	1st:  65.95	 2nd:  43.84	 3rd:  75.13

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig35

Genome size:  22460
Host's GC content:  66.22
Predicted Codon Position GC:  	1st:  67.63	 2nd:  44.58	 3rd:  79.74

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig36

Genome size:  26214
Host's GC content:  68.40
Predicted Codon Position GC:  	1st:  68.97	 2nd:  45.17	 3rd:  83.44

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig37

Genome size:  26843
Host's GC content:  66.02
Predicted Codon Position GC:  	1st:  67.50	 2nd:  44.52	 3rd:  79.40

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig38

Genome size:  30806
Host's GC content:  62.76
Predicted Codon Position GC:  	1st:  65.50	 2nd:  43.65	 3rd:  73.90

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig39

Genome size:  39705
Host's GC content:  67.84
Predicted Codon Position GC:  	1st:  68.62	 2nd:  45.02	 3rd:  82.48

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig40

Genome size:  47244
Host's GC content:  63.80
Predicted Codon Position GC:  	1st:  66.14	 2nd:  43.93	 3rd:  75.65

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig41

Genome size:  48571
Host's GC content:  55.04
Predicted Codon Position GC:  	1st:  60.75	 2nd:  41.56	 3rd:  60.83

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig42

Genome size:  49041
Host's GC content:  61.75
Predicted Codon Position GC:  	1st:  64.88	 2nd:  43.37	 3rd:  72.18

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig43

Genome size:  78395
Host's GC content:  64.37
Predicted Codon Position GC:  	1st:  66.49	 2nd:  44.08	 3rd:  76.62

 >PredictedProphage1 
 Length:   22607 
 Number of hits =   22 
 GC	Coding	First	Second	Third
 61.95 	 63.58 	 63.32 	 44.64 	 82.78 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 55254	55379	1	ref|YP_164268.1|hypothetical protein	41.2bits(95)	0.015
 55799	56026	1	ref|NP_943879.1|membrane integrity protector	36.2bits(82)	0.48
 57745	58431	-1	ref|NP_046569.1|IMPB 	67.0bits(162)	3e-10
 59988	60944	-1	ref|NP_112664.1|INT 	72.8bits(177)	5e-12
 61190	61567	-1	ref|NP_612990.1|Ea10 protein	59.7bits(143)	4e-08
 62038	64734	-1	ref|NP_490637.1|hypothetical protein	1137bits(2940)	0.0
 64791	65000	-1	ref|NP_490636.1|hypothetical protein	44.7bits(104)	0.001
 65446	65712	-1	ref|NP_490634.1|hypothetical protein	51.6bits(122)	1e-05
 65996	66325	-1	ref|NP_859325.1|hypothetical protein	120bits(302)	1e-26
 66841	67305	-1	ref|NP_490633.1|hypothetical protein	191bits(484)	1e-47
 67664	68080	1	ref|NP_663639.1|putative cI-like repressor	40.8bits(94)	0.019
 68194	68409	1	ref|YP_164054.1|transcriptional regulator	45.4bits(106)	8e-04
 69611	69937	-1	ref|NP_490627.1|hypothetical protein	114bits(284)	2e-24
 70523	70765	-1	ref|NP_817710.1|gp32 	43.9bits(102)	0.002
 71666	71842	-1	ref|NP_490627.1|hypothetical protein	64.3bits(155)	2e-09
 72579	73766	-1	ref|NP_490627.1|hypothetical protein	552bits(1423)	1e-156
 73799	74218	-1	ref|NP_490626.1|hypothetical protein	214bits(545)	1e-54
 74555	74734	-1	ref|NP_463477.1|putative tape-measure protein	38.9bits(89)	0.074
 74762	75067	-1	ref|NP_839874.1|gpT 	50.8bits(120)	2e-05
 75671	76630	-1	ref|NP_599046.1|tail protein	329bits(844)	2e-89
 77478	77579	-1	ref|NP_490624.1|hypothetical protein	59.3bits(142)	5e-08
 77612	77860	-1	ref|NP_490623.1|hypothetical protein	90.9bits(224)	2e-17
 


Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig44

Genome size:  95071
Host's GC content:  67.72
Predicted Codon Position GC:  	1st:  68.55	 2nd:  44.98	 3rd:  82.29

 >PredictedProphage1 
 Length:   26915 
 Number of hits =   12 
 GC	Coding	First	Second	Third
 67.45 	 67.04 	 65.01 	 43.77 	 92.34 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 11476	12099	1	ref|NP_040730.1|pre-neck appendage protein	39.3bits(90)	0.067
 15019	15876	1	ref|NP_943809.1|gp31 	37.0bits(84)	0.33
 17557	18333	1	ref|NP_075290.1|gp23 	40.4bits(93)	0.030
 18722	19546	1	ref|NP_690646.1|pre-neck appendage protein	50.8bits(120)	2e-05
 21621	22445	1	ref|NP_690646.1|pre-neck appendage protein	41.2bits(95)	0.018
 23558	24271	1	ref|NP_040730.1|pre-neck appendage protein	53.1bits(126)	4e-06
 26090	26914	1	ref|NP_690646.1|pre-neck appendage protein	44.7bits(104)	0.002
 28033	28746	1	ref|NP_040730.1|pre-neck appendage protein	48.1bits(113)	1e-04
 31407	32021	1	ref|NP_040730.1|pre-neck appendage protein	51.2bits(121)	2e-05
 33834	34154	1	ref|NP_690646.1|pre-neck appendage protein	46.2bits(108)	5e-04
 37172	37345	1	ref|NP_945089.1|gp58 	38.9bits(89)	0.088
 38220	38390	1	ref|NP_958267.1|hypothetical protein	36.6bits(83)	0.44
 


Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig45

Genome size:  86808
Host's GC content:  64.66
Predicted Codon Position GC:  	1st:  66.66	 2nd:  44.16	 3rd:  77.10

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig46

Genome size:  94534
Host's GC content:  66.27
Predicted Codon Position GC:  	1st:  67.66	 2nd:  44.59	 3rd:  79.83

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig47

Genome size:  89439
Host's GC content:  65.11
Predicted Codon Position GC:  	1st:  66.94	 2nd:  44.28	 3rd:  77.86

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig48

Genome size:  113804
Host's GC content:  63.65
Predicted Codon Position GC:  	1st:  66.05	 2nd:  43.89	 3rd:  75.40

 >PredictedProphage1 
 Length:   9344 
 Number of hits =   5 
 GC	Coding	First	Second	Third
 66.40 	 65.02 	 70.93 	 61.44 	 62.68 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 68352	68717	1	ref|NP_958267.1|hypothetical protein	38.1bits(87)	0.18
 69232	69876	1	ref|NP_958267.1|hypothetical protein	42.4bits(98)	0.009
 72667	73092	1	ref|YP_025027.1|putative terminase large subunit	37.0bits(84)	0.39
 74301	74993	1	ref|NP_958267.1|hypothetical protein	39.7bits(91)	0.061
 76916	77695	1	ref|NP_047372.1|putative maturation protein	113bits(282)	4e-24
 


Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig49

Genome size:  125581
Host's GC content:  66.88
Predicted Codon Position GC:  	1st:  68.03	 2nd:  44.76	 3rd:  80.85

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig50

Genome size:  137425
Host's GC content:  66.05
Predicted Codon Position GC:  	1st:  67.52	 2nd:  44.53	 3rd:  79.46

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig51

Genome size:  153738
Host's GC content:  68.44
Predicted Codon Position GC:  	1st:  68.99	 2nd:  45.18	 3rd:  83.50

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig52

Genome size:  153808
Host's GC content:  67.85
Predicted Codon Position GC:  	1st:  68.63	 2nd:  45.02	 3rd:  82.51

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig53

Genome size:  170020
Host's GC content:  66.28
Predicted Codon Position GC:  	1st:  67.66	 2nd:  44.59	 3rd:  79.84

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig54

Genome size:  167092
Host's GC content:  64.40
Predicted Codon Position GC:  	1st:  66.50	 2nd:  44.09	 3rd:  76.66

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig55

Genome size:  215979
Host's GC content:  66.67
Predicted Codon Position GC:  	1st:  67.90	 2nd:  44.70	 3rd:  80.50

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig56

Genome size:  300564
Host's GC content:  66.83
Predicted Codon Position GC:  	1st:  68.00	 2nd:  44.74	 3rd:  80.77

 >PredictedProphage1 
 Length:   14188 
 Number of hits =   6 
 GC	Coding	First	Second	Third
 63.03 	 63.30 	 65.18 	 41.76 	 82.97 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 97920	98867	-1	ref|NP_817564.1|gp117 	334bits(857)	2e-90
 102382	102687	-1	ref|YP_195165.1|small heat shock protein	82.4bits(202)	2e-14
 102924	103229	-1	ref|YP_195165.1|small heat shock protein	83.6bits(205)	9e-15
 107965	108651	-1	ref|NP_665940.1|unknown 	46.2bits(108)	0.002
 111388	111723	-1	ref|NP_612844.1|Gp15 protein	80.1bits(196)	1e-13
 111925	112107	-1	ref|NP_108734.1|lysin 	46.2bits(108)	0.002
 


Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig57

Genome size:  307361
Host's GC content:  65.29
Predicted Codon Position GC:  	1st:  67.05	 2nd:  44.33	 3rd:  78.17

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig58

Genome size:  372495
Host's GC content:  65.20
Predicted Codon Position GC:  	1st:  67.00	 2nd:  44.30	 3rd:  78.02

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig59

Genome size:  522437
Host's GC content:  66.72
Predicted Codon Position GC:  	1st:  67.93	 2nd:  44.71	 3rd:  80.58

 

Prophage Finder Output

Genome file:  temp/azotobacterlc.txt
Sequence Header:  >Contig60

Genome size:  1802798
Host's GC content:  65.45
Predicted Codon Position GC:  	1st:  67.15	 2nd:  44.37	 3rd:  78.44

 >PredictedProphage1 
 Length:   16003 
 Number of hits =   7 
 GC	Coding	First	Second	Third
 65.11 	 64.50 	 67.35 	 43.10 	 83.03 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 90160	90516	1	ref|NP_542287.1|unknown 	41.2bits(95)	0.26
 91785	92426	-1	ref|NP_818239.1|gp188 	42.0bits(97)	0.15
 97697	98035	-1	ref|NP_859315.1|hypothetical protein	82.0bits(201)	1e-13
 99698	99973	-1	ref|NP_490609.1|hypothetical protein	45.4bits(106)	0.014
 100838	101443	-1	ref|YP_024681.1|gp08 	56.2bits(134)	8e-06
 104168	104593	-1	ref|NP_542568.1|putative methyltransferase-endonuclease	41.2bits(95)	0.26
 105308	106162	-1	ref|NP_445687.1|putative helicase	51.2bits(121)	3e-04
 
 >PredictedProphage2 
 Length:   6185 
 Number of hits =   5 
 GC	Coding	First	Second	Third
 68.78 	 70.31 	 71.97 	 53.48 	 85.49 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 677127	677396	-1	ref|NP_542290.1|unknown 	40.8bits(94)	0.34
 679794	680141	1	ref|NP_899291.1|Sir2 	42.0bits(97)	0.15
 681044	681322	1	ref|NP_050160.1|hypothetical protein	57.4bits(137)	4e-06
 681751	682044	1	ref|NP_050160.1|hypothetical protein	59.3bits(142)	9e-07
 682994	683311	1	ref|NP_899291.1|Sir2 	48.5bits(114)	0.002
 
 >PredictedProphage3 
 Length:   7320 
 Number of hits =   6 
 GC	Coding	First	Second	Third
 57.45 	 53.08 	 56.36 	 42.49 	 60.40 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 853359	853589	-1	ref|NP_042041.1|transcriptional regulator	61.2bits(147)	2e-07
 853891	854100	-1	ref|NP_490634.1|hypothetical protein	47.4bits(111)	0.004
 854648	854830	1	ref|NP_490634.1|hypothetical protein	41.6bits(96)	0.20
 855624	856127	-1	ref|NP_116522.1|unknown 	57.0bits(136)	5e-06
 856853	857443	-1	ref|YP_006528.1|ParA 	55.1bits(131)	2e-05
 860322	860678	-1	ref|NP_945089.1|gp58 	54.7bits(130)	2e-05
 
 >PredictedProphage4 
 Length:   10794 
 Number of hits =   6 
 GC	Coding	First	Second	Third
 63.79 	 63.82 	 66.23 	 41.43 	 83.81 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 1027529	1028380	1	ref|NP_958675.1|reverse transcriptase	50.4bits(119)	4e-04
 1030970	1031320	-1	ref|NP_046877.1|putative non-heme haloperoxidase	44.3bits(103)	0.031
 1031641	1032510	1	ref|NP_945089.1|gp58 	78.2bits(191)	2e-12
 1036442	1036915	1	ref|NP_862860.1|gp21 	43.9bits(102)	0.041
 1036999	1037688	-1	ref|NP_851940.1|putative integrase	94.4bits(233)	3e-17
 1038113	1038322	1	ref|NP_839899.1|hypothetical protein	52.0bits(123)	1e-04
 
 >PredictedProphage5 
 Length:   21556 
 Number of hits =   6 
 GC	Coding	First	Second	Third
 63.32 	 64.27 	 68.00 	 47.02 	 77.78 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 1488347	1488823	-1	ref|NP_817998.1|gp25 	50.4bits(119)	4e-04
 1491512	1491991	1	ref|NP_945089.1|gp58 	46.2bits(108)	0.008
 1496290	1496817	-1	ref|NP_758949.1|ORF58 	110bits(276)	3e-22
 1502303	1502914	-1	ref|NP_665998.1|putative C5-cytosine methyltransferase	76.3bits(186)	7e-12
 1507598	1507780	-1	ref|NP_612879.1|Gp50 protein	41.2bits(95)	0.26
 1508808	1509902	-1	ref|YP_164334.1|integrase 	79.3bits(194)	9e-13