BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig27 (2409 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958285.1|ORF7 33 0.18 >ref|NP_958285.1|ORF7 Length = 131 Score = 32.7 bits (73), Expect = 0.18 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +3 Query: 1203 PRLAWRHLPQQRGSRRVVLTGPRWSRTSP 1289 PR+AWRH P+ G RR + R R SP Sbjct: 24 PRIAWRHGPRPAGDRRPAVPSRRRDRRSP 52 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,795,504 Number of Sequences: 14420 Number of extensions: 253933 Number of successful extensions: 905 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 821 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 904 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1166239627 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig28 (2241 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 36 0.020 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 35.8 bits (81), Expect = 0.020 Identities = 41/141 (29%), Positives = 54/141 (38%), Gaps = 6/141 (4%) Frame = +3 Query: 858 RRPQLPPETG---QPRRPRWLVGDPAAQAERLSRRPGQHPCAAIRPRSGHRPGLYRRSGP 1028 R P+ P+ G P P PAA + RP C R H R P Sbjct: 83 RAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRPRAPEC----DRGAHH---LRTRAP 135 Query: 1029 GQQRQE--LAPG-RVFRLADHRALRRPVRHRLPEGHPPGRRRPALAVHRRTAGLRLQ*AV 1199 + + L PG RV + R RR R R P+ + R + VHRR R+ V Sbjct: 136 RTRTRAVPLGPGARVRTPVEDR--RRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRV 193 Query: 1200 QADRRTGPRPDQGPRRYPQAD 1262 + R GP + PRR P + Sbjct: 194 RVRARPGPGAARRPRRRPHPE 214 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,134,087 Number of Sequences: 14420 Number of extensions: 233176 Number of successful extensions: 785 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 691 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 783 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1073864211 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig29 (1925 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_024843.1|Pas57 37 0.006 ref|NP_047356.1|attachment protein 34 0.049 ref|NP_542342.1|unknown 33 0.11 >ref|YP_024843.1|Pas57 Length = 305 Score = 37.4 bits (85), Expect = 0.006 Identities = 28/74 (37%), Positives = 40/74 (54%) Frame = -1 Query: 1892 EIASSSSTPPSMAVG*TWPKSRSTYSPASAWTGASTPSSGCARRSPHGSNAATSSMPRST 1713 E+ S + PPS + + S ST + ASA T AS +S A S S A++S+ P +T Sbjct: 182 EVYSLTCAPPSTST--SASASASTSASASASTSASASTSASASASTSAS-ASSSASPSTT 238 Query: 1712 GSSPPRMRGSSYAA 1671 GS+ P S+ AA Sbjct: 239 GSASPSTTTSTTAA 252 >ref|NP_047356.1|attachment protein Length = 460 Score = 34.3 bits (77), Expect = 0.049 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = +1 Query: 751 RPPSDSTSGRQQRSSGYGASGKAGNSSPADRVSPGACGSIP 873 R S +G SSG G++G +GN+S D V+PG ++P Sbjct: 75 RAADGSGNGGDDNSSGGGSNGDSGNNSTPDTVTPGQTVNLP 115 >ref|NP_542342.1|unknown Length = 164 Score = 33.1 bits (74), Expect = 0.11 Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 17/132 (12%) Frame = +1 Query: 847 SPGACGS-IPMRTT--CSACSSRPPT*R---W----PNSPRPSNGSVASVSAWRRCGR-F 993 +P C S +P+ T C+ S PT R W P SPRPS +A+ W R F Sbjct: 11 TPTTCSSPLPISRTRDCARSSRSAPTGRSAPWSRRSPKSPRPSASRLAN-PRWSSLARSF 69 Query: 994 STGTP*RSK------KDRACSRAATAGRPGSPTGMDRGAVRFRLAQADLRRRNRRFDEPG 1155 P R+ +DR+CS A + R + + + R A + RR R D Sbjct: 70 PFSPPTRNTSAALWPRDRSCSSMAPSIRKTAASPIARSAATSCIRPCFANRRGRSNDRDH 129 Query: 1156 PPARLGPSRRAL 1191 + G R L Sbjct: 130 QGSNRGRKRHIL 141 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,039,422 Number of Sequences: 14420 Number of extensions: 180091 Number of successful extensions: 696 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 694 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 910197607 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig30 (3068 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_025041.1|putative transposase B 148 4e-36 ref|NP_958229.1|gene 55 protein 132 3e-31 ref|NP_859396.1|hypothetical protein 129 1e-30 ref|NP_536395.1|ISBt3 transposase subunit protein 129 1e-30 ref|NP_862860.1|gp21 44 1e-04 ref|YP_025058.1|DnaC 42 4e-04 ref|NP_061611.1|orf 21 42 5e-04 ref|NP_038305.1|ORF5 40 0.001 ref|NP_075485.1|hypothetical protein 40 0.001 ref|NP_803371.1|dnaC 40 0.001 ref|NP_958645.1|77ORF013 37 0.012 ref|NP_839903.1|putative DnaC protein 35 0.036 ref|NP_076710.1|DnaC 35 0.036 ref|NP_944257.1|putative DnaC 35 0.047 ref|NP_543070.1|putative replication protein DnaC 35 0.047 ref|NP_510917.1|similar to Escherichia coli DnaC 35 0.062 ref|NP_076651.1|DnaC 34 0.080 ref|NP_938213.1|A transposase 34 0.11 ref|NP_859298.1|hypothetical protein 32 0.40 ref|NP_612932.1|hypothetical protein 32 0.40 ref|NP_859132.1|hypothetical protein 32 0.40 >ref|YP_025041.1|putative transposase B Length = 280 Score = 148 bits (373), Expect = 4e-36 Identities = 79/202 (39%), Positives = 118/202 (58%), Gaps = 2/202 (0%) Frame = -2 Query: 2206 CNRKTVAASMRRQGLXXXXXRKFKATTNSRHSLPVADNLLRQDFTAAAPNRKWVGDMTYL 2027 C+ + ++ M+ + K+KA + S+ + NLL+QDF+ N+KW DMTY+ Sbjct: 65 CSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYI 124 Query: 2026 RTEE-GWLYLAVIIDLYSRRVIGWAMNERMTAELACDALRMALWRRKQPQGVIVHTDRGS 1850 +T+ GW YL+ I+DL+SRR+IG++ +++M +L L A+ R +I+HTD GS Sbjct: 125 QTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIHTDLGS 184 Query: 1849 QYCSAAYRELLRAHRLRGSMSAKGNCYDNACAESFFHSLKVECIHG-ERFGTHAQMRQTV 1673 QY S Y + L +R S S KG YDNA ESF SLK EC++ F + + Sbjct: 185 QYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVL 244 Query: 1672 FEYIETDYNRQRRHSTLGYISP 1607 FEY+ YNR+R HS+LGY +P Sbjct: 245 FEYVHAFYNRKRIHSSLGYQTP 266 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 132 bits (331), Expect = 3e-31 Identities = 67/176 (38%), Positives = 101/176 (57%) Frame = -2 Query: 2116 HSLPVADNLLRQDFTAAAPNRKWVGDMTYLRTEEGWLYLAVIIDLYSRRVIGWAMNERMT 1937 H N L + F PN+ W GD+TY+ T + W YLAV++DL++R+ +GWAM+ Sbjct: 119 HEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPD 178 Query: 1936 AELACDALRMALWRRKQPQGVIVHTDRGSQYCSAAYRELLRAHRLRGSMSAKGNCYDNAC 1757 + L AL MA R +P GV+ H+D+GS Y S +R+LL +++R SMS +GNC+DN+ Sbjct: 179 SRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSP 238 Query: 1756 AESFFHSLKVECIHGERFGTHAQMRQTVFEYIETDYNRQRRHSTLGYISPEAFEAR 1589 E FF SLK E + + + ++ + +YI Y+ R H G + P E R Sbjct: 239 MERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENR 294 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 129 bits (325), Expect = 1e-30 Identities = 76/202 (37%), Positives = 108/202 (53%) Frame = -2 Query: 2200 RKTVAASMRRQGLXXXXXRKFKATTNSRHSLPVADNLLRQDFTAAAPNRKWVGDMTYLRT 2021 R TVA M GL K TT SR ++ D + RQ F A P++ WV D TY+ T Sbjct: 84 RCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQ-FVAERPDQLWVADFTYVST 142 Query: 2020 EEGWLYLAVIIDLYSRRVIGWAMNERMTAELACDALRMALWRRKQPQGVIVHTDRGSQYC 1841 +G++Y+A IID+++ ++GW ++ M DAL ALW R+ P G I H+D+GSQY Sbjct: 143 WQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARR-PSGTIHHSDKGSQYV 201 Query: 1840 SAAYRELLRAHRLRGSMSAKGNCYDNACAESFFHSLKVECIHGERFGTHAQMRQTVFEYI 1661 S AY E L+ L S + G+ YDNA AES K E IH + + A++ ++ Sbjct: 202 SLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWV 261 Query: 1660 ETDYNRQRRHSTLGYISPEAFE 1595 + YN +R LG+ P E Sbjct: 262 DW-YNNRRLLGRLGHTPPAEAE 282 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 129 bits (325), Expect = 1e-30 Identities = 76/206 (36%), Positives = 110/206 (53%), Gaps = 3/206 (1%) Frame = -2 Query: 2200 RKTVAASMRRQGLXXXXXRKFKATTNSRHSLPVADNLLRQDFTAAAPNRKWVGDMTYLRT 2021 R TV M+ QGL K TT + + P + + + F A PN+ WV D TY+ T Sbjct: 64 RCTVGRLMKLQGLRGAVRGKRVRTTITDVTAPRPLDRVNRQFKADRPNQLWVSDFTYVST 123 Query: 2020 EEGWLYLAVIIDLYSRRVIGWAMNERMTAELACDALRMALWRRKQPQG--VIVHTDRGSQ 1847 +GWLY+A +ID+++RR++GW ++ MT + DAL AL+ R+ + +I H+DRGSQ Sbjct: 124 WQGWLYVAFVIDVFARRIVGWRVSSSMTTDFVLDALEQALYARQPGEDGTLIHHSDRGSQ 183 Query: 1846 YCSAAYRELLRAHRLRGSMSAKGNCYDNACAESFFHSLKVECIHGER-FGTHAQMRQTVF 1670 Y S Y E L + S+ ++G+ YDNA AE+ K E IH + T + Sbjct: 184 YVSIRYSERLAEAGIEPSVGSRGDSYDNALAETINGLYKTELIHRRAPWKTRESVELATL 243 Query: 1669 EYIETDYNRQRRHSTLGYISPEAFEA 1592 E++ YN R LGYI P EA Sbjct: 244 EWVAW-YNHHRLMEPLGYIPPAEAEA 268 >ref|NP_862860.1|gp21 Length = 256 Score = 43.9 bits (102), Expect = 1e-04 Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 10/168 (5%) Frame = -3 Query: 2787 ELAGLAFVERT---------ENIVLIGPSGVGKTHLAIA-LGYRAAQSGLKTRFITAADL 2638 E LAFV+R NIV G +G GK+HLA A + Y + + FI DL Sbjct: 99 EAEKLAFVKRICREWSEGARNNIVFQGEAGTGKSHLAFAMMKYLSETTKEIAIFINVTDL 158 Query: 2637 MLQLGAAQRQGRLKTYLNRAILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMIL 2458 ++++ A Q + +L I + + LV+D++G ++ + ++ KR + ++ Sbjct: 159 LMKIKADFSQ---EEFLVNKIASAKFLVLDDLGMEKDSEWSFSILYNILNKR---ANTVI 212 Query: 2457 TSNLPFSQWAEAFSGDATLTAAMLDRLLHHAHILTLTGESYRLKDKRK 2314 T+NL + + + G ++ M + + ++H++ LK+KRK Sbjct: 213 TTNLTAQEIQKRY-GRPFMSRLM--KGVDNSHLMVFND----LKNKRK 253 >ref|YP_025058.1|DnaC Length = 260 Score = 42.0 bits (97), Expect = 4e-04 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 18/125 (14%) Frame = -3 Query: 2754 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLM----LQLGAAQRQGRLKTYL 2587 EN++L GP G GKT LA+A+ G FI+ A+L LQ A + RL + Sbjct: 102 ENVILFGPRGAGKTSLALAMLTSLRDEGQSGLFISTAELSNLMGLQYDAPDVRLRL-VGI 160 Query: 2586 NRAILAPRLLVIDEIG--------YLPFGREEANLFFQVVAKRYE------KGSMILTSN 2449 RA+ +L++D+ G P R+ L ++V R + + S I+T+N Sbjct: 161 ERAMKEAGVLLLDDFGTEGGMKLDIKPVRRDMQELIYRVANARLDFESNRPRLSTIITTN 220 Query: 2448 LPFSQ 2434 S+ Sbjct: 221 NEMSE 225 >ref|NP_061611.1|orf 21 Length = 257 Score = 41.6 bits (96), Expect = 5e-04 Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 2/146 (1%) Frame = -3 Query: 2754 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKT--YLNR 2581 ++++L G G GK+HLA A+ G F+ LM ++ AA + ++T L R Sbjct: 117 KSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIQMLMDRIKAAYNKNAVETTDELVR 176 Query: 2580 AILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTSNLPFSQWAEAFSGDATL 2401 + LLV+D++G + N F +V R K + I T+N + + + Sbjct: 177 LLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTNFSDKELNQNMNWQ--- 231 Query: 2400 TAAMLDRLLHHAHILTLTGESYRLKD 2323 + R+ H+A + + G+ +R +D Sbjct: 232 --RINSRMKHNARKVRVIGDDFRERD 255 >ref|NP_038305.1|ORF5 Length = 260 Score = 40.4 bits (93), Expect = 0.001 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 4/106 (3%) Frame = -3 Query: 2751 NIVLIGPSGVGKTHLAI----ALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKTYLN 2584 NIVLIG +GVGK+HLA AL + G+ FI DL+ ++ + L+ Sbjct: 121 NIVLIGNTGVGKSHLAYSALKALSDHTKKMGV---FINVVDLLAKI---KEDFNLEAEYI 174 Query: 2583 RAILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTSNL 2446 R I LV+D++G + + + ++ KR + I+T+NL Sbjct: 175 RRISEAEWLVLDDLGTEKVTEWSSGILYSILNKRTK---TIITTNL 217 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 40.0 bits (92), Expect = 0.001 Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 2/146 (1%) Frame = -3 Query: 2754 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKT--YLNR 2581 ++++L G G GK+HLA A+ G F+ LM ++ A + ++T L R Sbjct: 119 KSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVR 178 Query: 2580 AILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTSNLPFSQWAEAFSGDATL 2401 + LLV+D++G + N F +V R K + I T+N + + + Sbjct: 179 LLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTNFSDKELNQNMNWQ--- 233 Query: 2400 TAAMLDRLLHHAHILTLTGESYRLKD 2323 + R+ H+A + + G+ +R +D Sbjct: 234 --RINSRMKHNARKVRVIGDDFRERD 257 >ref|NP_803371.1|dnaC Length = 259 Score = 40.0 bits (92), Expect = 0.001 Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 2/146 (1%) Frame = -3 Query: 2754 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKT--YLNR 2581 ++++L G G GK+HLA A+ G F+ LM ++ A + ++T L R Sbjct: 119 KSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVR 178 Query: 2580 AILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTSNLPFSQWAEAFSGDATL 2401 + LLV+D++G + N F +V R K + I T+N + + + Sbjct: 179 LLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTNFSDKELNQNMNWQ--- 233 Query: 2400 TAAMLDRLLHHAHILTLTGESYRLKD 2323 + R+ H+A + + G+ +R +D Sbjct: 234 --RINSRMKHNARKVRVIGDDFRERD 257 >ref|NP_958645.1|77ORF013 Length = 259 Score = 37.0 bits (84), Expect = 0.012 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Frame = -3 Query: 2754 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKT--YLNR 2581 ++++L G G GK+HLA A+ G F+ LM ++ A + ++T L R Sbjct: 119 KSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVR 178 Query: 2580 AILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTS 2452 + LLV+D++G + N F +V R K ++ T+ Sbjct: 179 LLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNNIFTTN 220 >ref|NP_839903.1|putative DnaC protein Length = 294 Score = 35.4 bits (80), Expect = 0.036 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%) Frame = -3 Query: 2751 NIVLIGPSGVGKTHLAIAL----GYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKTYLN 2584 N V +G +G GK+HLA+A+ + T FI ++L+ ++ + K Sbjct: 146 NTVFVGGAGRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNYSDTKAEEE 205 Query: 2583 RAILAPR---LLVIDEIGYLPFGREEANLFFQVVAKRY--EKGSMILTSNL 2446 R R LLVID++G ++ + V+ Y +G+ I+TSNL Sbjct: 206 RLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNTIITSNL 256 >ref|NP_076710.1|DnaC Length = 294 Score = 35.4 bits (80), Expect = 0.036 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 10/112 (8%) Frame = -3 Query: 2751 NIVLIGPSGVGKTHLAIALGYRAAQSGLK-----TRFITAADLMLQLGAAQRQGRLKTYL 2587 N V +G +G GK+HLA+A+ + LK T FI ++L+ ++ + K Sbjct: 146 NTVFVGGAGRGKSHLAMAI-LQEVNENLKDDKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 2586 NRAILAPR---LLVIDEIGYLPFGREEANLFFQVVAKRY--EKGSMILTSNL 2446 R R LLVID++G ++ + V+ Y +G+ I+TSNL Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNTIITSNL 256 >ref|NP_944257.1|putative DnaC Length = 265 Score = 35.0 bits (79), Expect = 0.047 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 4/145 (2%) Frame = -3 Query: 2748 IVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKT---YLNRA 2578 ++ G G GK+HLA+A+ + ++ A L+ ++ A R+ ++ L+ Sbjct: 128 LIFGGNPGTGKSHLALAIQQYVMRHST-AMYLDAMALIRRVRATWRRDAPQSEEEVLHTL 186 Query: 2577 ILAPRLLVIDEIGYLPFGREEANLFFQVVAKRY-EKGSMILTSNLPFSQWAEAFSGDATL 2401 LL IDEIG +E + F+++ +RY + IL +NL + + L Sbjct: 187 GFTVDLLAIDEIGVQRGTDDEQAIVFEIINRRYRDLRPTILMTNLNGAGLKD------FL 240 Query: 2400 TAAMLDRLLHHAHILTLTGESYRLK 2326 A +DRL +L S+R K Sbjct: 241 GARTMDRLYERGTMLPFMWPSHRRK 265 >ref|NP_543070.1|putative replication protein DnaC Length = 252 Score = 35.0 bits (79), Expect = 0.047 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 7/120 (5%) Frame = -3 Query: 2766 VERTENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQ---RQGRLK 2596 +E ++V+ G G GK HLA+++ ++ L + IT D+M A + R K Sbjct: 101 LENGTSLVMTGSCGTGKNHLAVSMAKHIIRNYLASVEIT--DVMRLTRAVKNCWRNDSEK 158 Query: 2595 T--YLNRAILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEK-GSMILTSNL-PFSQWA 2428 T + + LL+IDE+G E + +++ RYE IL SNL P WA Sbjct: 159 TADEVIEHYASMDLLIIDEVGVQFGSAAEMAILQEIINARYESILPTILISNLSPEELWA 218 >ref|NP_510917.1|similar to Escherichia coli DnaC Length = 259 Score = 34.7 bits (78), Expect = 0.062 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 2/103 (1%) Frame = -3 Query: 2754 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKT--YLNR 2581 ++++ G G GK+HLA A+ G F+ LM ++ A + ++T L + Sbjct: 119 KSLIFQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVK 178 Query: 2580 AILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTS 2452 + LLV+D++G + N F +V R K ++ T+ Sbjct: 179 LLSEIDLLVLDDMG-VENTEHTINKLFSIVDNRVGKNNIFTTN 220 >ref|NP_076651.1|DnaC Length = 294 Score = 34.3 bits (77), Expect = 0.080 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 9/111 (8%) Frame = -3 Query: 2751 NIVLIGPSGVGKTHLAIAL----GYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKTYLN 2584 N V +G + GK+HLA+A+ + T FI ++L+ ++ + K Sbjct: 146 NTVFVGGACRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNHSDTKAEEE 205 Query: 2583 RAILAPR---LLVIDEIGYLPFGREEANLFFQVVAKRY--EKGSMILTSNL 2446 R R LLVID++G ++ N V+ Y +G+ I+TSNL Sbjct: 206 RLTTLMRTVDLLVIDDLGTESTFSKDNNWVQGVIYNIYNAREGNTIITSNL 256 >ref|NP_938213.1|A transposase Length = 690 Score = 33.9 bits (76), Expect = 0.11 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Frame = -2 Query: 2116 HSLPVADNLLRQDFTAAAPNRKWVGDMTYLRTE-----EGWLY---LAVIIDLYSRRVIG 1961 H + +R+DFT P + D E G + + IID+ +RR+ G Sbjct: 239 HEIKALRPFIRRDFTKLLPTDVYSCDGHTFDAEVQHPMHGRPFRPEITTIIDIRTRRIPG 298 Query: 1960 WAMNERMTAELACDALRMALWRRKQPQGVIVHTDRGSQYCSAAYRE 1823 W+ +A + DALR A + P I + D GS Y + R+ Sbjct: 299 WSTGLAESALVVVDALRDACIKGGVP--AIFYVDNGSGYVNHMMRD 342 >ref|NP_859298.1|hypothetical protein Length = 117 Score = 32.0 bits (71), Expect = 0.40 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +2 Query: 1295 RRPRMQSPHACSVGPVGRPSCPAWLHA 1375 R P + PH + R SCPAW+HA Sbjct: 2 RHPLLPYPHQHTAPEAARDSCPAWIHA 28 >ref|NP_612932.1|hypothetical protein Length = 117 Score = 32.0 bits (71), Expect = 0.40 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +2 Query: 1295 RRPRMQSPHACSVGPVGRPSCPAWLHA 1375 R P + PH + R SCPAW+HA Sbjct: 2 RHPLLPYPHQHTAPEAARDSCPAWIHA 28 >ref|NP_859132.1|hypothetical protein Length = 117 Score = 32.0 bits (71), Expect = 0.40 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +2 Query: 1295 RRPRMQSPHACSVGPVGRPSCPAWLHA 1375 R P + PH + R SCPAW+HA Sbjct: 2 RHPLLPYPHQHTAPEAARDSCPAWIHA 28 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,140,010 Number of Sequences: 14420 Number of extensions: 344362 Number of successful extensions: 1246 Number of sequences better than 0.5: 21 Number of HSP's better than 0.5 without gapping: 1040 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1237 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1499166925 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig31 (5747 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_695158.1|minor capsid protein 74 2e-13 ref|NP_943827.1|gp49 70 2e-12 ref|NP_046584.1|putative transglycosylase 64 1e-10 ref|NP_612844.1|Gp15 protein 62 9e-10 ref|NP_835564.1|hypothetical protein 59 6e-09 ref|NP_958615.1|77ORF001 59 6e-09 ref|NP_803396.1|tail length tape measure protein 55 1e-07 ref|NP_058454.1|orf 16 55 1e-07 ref|NP_061640.1|phi PVL ORF 15 and 16 homologue 54 1e-07 ref|NP_112710.1|ORF47 51 1e-06 ref|NP_076626.1|endopeptidase 51 1e-06 ref|NP_108727.1|minor structural protein 3 49 5e-06 ref|NP_663686.1|structural protein 49 6e-06 ref|NP_958675.1|reverse transcriptase 44 1e-04 ref|NP_996568.1|reverse transcriptase 44 1e-04 ref|NP_996616.1|hypothetical protein predicted by GeneMark 44 1e-04 ref|NP_758929.1|ORF37 44 2e-04 ref|YP_195243.1|hypothetical protein 41 0.001 ref|NP_803346.1|tail fiber protein 37 0.030 ref|NP_075512.2|hypothetical protein 36 0.040 ref|NP_777327.1|hypothetical protein 34 0.20 ref|NP_818053.1|gp80 33 0.26 >ref|NP_695158.1|minor capsid protein Length = 1608 Score = 73.9 bits (180), Expect = 2e-13 Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 3/109 (2%) Frame = +3 Query: 3042 HKGVDYAAPRGTPIRATGDGKVTLAGRKGGYGNTVIIE-HGNNQQTLYAHMQGFAKGIRT 3218 HKG+D+AAP GTPI A G V AG G+GN V+I+ G + T+Y HM+ ++T Sbjct: 1257 HKGIDFAAPLGTPIPAQYGGTVVQAGPASGFGNWVVIKPSGASVDTIYGHMKRMK--VKT 1314 Query: 3219 GSSVKXXXXXXXXXXXXLSTGPHLHYEFQ--INGTHVDPLSQKLTMANP 3359 G VK S+GPH+HYE + + G +P++ + NP Sbjct: 1315 GQHVKAGQIIAWVGSEGQSSGPHVHYELRAGLGGKSYNPMTYGASAGNP 1363 >ref|NP_943827.1|gp49 Length = 429 Score = 70.5 bits (171), Expect = 2e-12 Identities = 41/114 (35%), Positives = 54/114 (47%), Gaps = 8/114 (7%) Frame = +3 Query: 3042 HKGVDYAAPRGTPIRATGDGKVTLAGRKGGYGNTVIIEH---GNNQQTLYAHM-QGFAKG 3209 H+G+D+AA GTPI A G V GR G+G ++I+H T+Y HM FA G Sbjct: 20 HRGLDFAAKDGTPIYAAQGGTVAYIGRADGFGQWIVIDHPAADGGGTTVYGHMWDAFATG 79 Query: 3210 IRTGSSVKXXXXXXXXXXXXLSTGPHLHYEFQ----INGTHVDPLSQKLTMANP 3359 +R G V+ STGPHLH+E G+ +DP NP Sbjct: 80 LRQGQRVEAGQLIAYVGTNGQSTGPHLHFEVHPTVWRQGSQIDPKPWLANARNP 133 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 64.3 bits (155), Expect = 1e-10 Identities = 40/116 (34%), Positives = 57/116 (49%) Frame = +3 Query: 2982 RISSRFSNGRRHPILNKIRAHKGVDYAAPRGTPIRATGDGKVTLAGRKGGYGNTVIIEHG 3161 R+SS++ G++ L HKG D+AA GT I++ GKV +AG GN V+I+ Sbjct: 1563 RVSSKY--GQQESGLRS-SPHKGTDFAAKAGTAIKSLQSGKVQIAGYSKTAGNWVVIKQD 1619 Query: 3162 NNQQTLYAHMQGFAKGIRTGSSVKXXXXXXXXXXXXLSTGPHLHYEFQINGTHVDP 3329 + Y HM ++ G SVK STG HLH + + NG +DP Sbjct: 1620 DGTVAKYMHMLN-TPSVKAGQSVKAGQTIGKVGSTGNSTGNHLHLQIEQNGKTIDP 1674 >ref|NP_612844.1|Gp15 protein Length = 983 Score = 61.6 bits (148), Expect = 9e-10 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Frame = +3 Query: 3042 HKGVDYAAPRGTPIRATGDGKVTLAGRK--GGYGNTVIIEHGNNQQTLYAHMQGFAKGIR 3215 H G+D+ P GTP+R + DG V + R+ YG + ++HG T+YAH + Sbjct: 878 HDGIDFGTPIGTPVRVSKDG-VVIKRRELTTSYGKYLFVDHGGGLITIYAHNSELL--VN 934 Query: 3216 TGSSVKXXXXXXXXXXXXLSTGPHLHYEFQING 3314 G VK STGPHLH+E ++NG Sbjct: 935 EGDRVKRGQIIAKTGNTGNSTGPHLHWELRVNG 967 >ref|NP_835564.1|hypothetical protein Length = 1509 Score = 58.9 bits (141), Expect = 6e-09 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Frame = +3 Query: 3042 HKGVDYAAPRGTPIRATGDGKVT-LAGRKGGYGNTVIIEHGNNQQTLYAHMQGFAKGIRT 3218 H+GVD+ +R G++T + GGYGN V I G L+AH++ F+K + Sbjct: 1144 HEGVDFPFVY-QEVRTPMGGRLTRMPFMSGGYGNYVKITSGVIDM-LFAHLKNFSKSPPS 1201 Query: 3219 GSSVKXXXXXXXXXXXXLSTGPHLHYEFQINGTHVDP 3329 G+ VK STGPHLH+E + NG H DP Sbjct: 1202 GTMVKPGDVVGLTGNTGFSTGPHLHFEMRRNGRHFDP 1238 >ref|NP_958615.1|77ORF001 Length = 1509 Score = 58.9 bits (141), Expect = 6e-09 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Frame = +3 Query: 3042 HKGVDYAAPRGTPIRATGDGKVT-LAGRKGGYGNTVIIEHGNNQQTLYAHMQGFAKGIRT 3218 H+GVD+ +R G++T + GGYGN V I G L+AH++ F+K + Sbjct: 1144 HEGVDFPFVY-QEVRTPMGGRLTRMPFMSGGYGNYVKITSGVIDM-LFAHLKNFSKSPPS 1201 Query: 3219 GSSVKXXXXXXXXXXXXLSTGPHLHYEFQINGTHVDP 3329 G+ VK STGPHLH+E + NG H DP Sbjct: 1202 GTMVKPGDVVGLTGNTGFSTGPHLHFEMRRNGRHFDP 1238 >ref|NP_803396.1|tail length tape measure protein Length = 1550 Score = 54.7 bits (130), Expect = 1e-07 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 1/98 (1%) Frame = +3 Query: 3042 HKGVDYAAPRGTPIRATGDGKV-TLAGRKGGYGNTVIIEHGNNQQTLYAHMQGFAKGIRT 3218 H+G+D+ P+ +T +G+ + GGYG V I G + +YAH+ + ++T Sbjct: 1189 HEGLDFDYIY-EPVPSTINGRAQVMPVHNGGYGKWVKIVKGA-LEVIYAHLSKYK--VKT 1244 Query: 3219 GSSVKXXXXXXXXXXXXLSTGPHLHYEFQINGTHVDPL 3332 G V+ STGPHLHYE + NG H DPL Sbjct: 1245 GQQVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPL 1282 >ref|NP_058454.1|orf 16 Length = 539 Score = 54.7 bits (130), Expect = 1e-07 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 1/98 (1%) Frame = +3 Query: 3042 HKGVDYAAPRGTPIRATGDGKV-TLAGRKGGYGNTVIIEHGNNQQTLYAHMQGFAKGIRT 3218 H+G+D+ P+ +T +G+ + GGYG V I G + +YAH+ + ++T Sbjct: 414 HEGLDFDYIY-EPVPSTINGRAQVMPFHNGGYGKWVKIVKGA-LEVIYAHLSKYK--VKT 469 Query: 3219 GSSVKXXXXXXXXXXXXLSTGPHLHYEFQINGTHVDPL 3332 G V+ STGPHLHYE + NG H DPL Sbjct: 470 GQQVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPL 507 >ref|NP_061640.1|phi PVL ORF 15 and 16 homologue Length = 1313 Score = 54.3 bits (129), Expect = 1e-07 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 1/98 (1%) Frame = +3 Query: 3042 HKGVDYAAPRGTPIRATGDGKV-TLAGRKGGYGNTVIIEHGNNQQTLYAHMQGFAKGIRT 3218 H+G+D+ P+ +T +G+ + GGYG V I G + +YAH+ + ++T Sbjct: 1188 HEGLDFDYIY-EPVPSTINGRAQVMPFHNGGYGKWVKIVKGA-LEVIYAHLSKYK--VKT 1243 Query: 3219 GSSVKXXXXXXXXXXXXLSTGPHLHYEFQINGTHVDPL 3332 G V+ STGPHLHYE + NG H DPL Sbjct: 1244 GHQVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPL 1281 >ref|NP_112710.1|ORF47 Length = 918 Score = 51.2 bits (121), Expect = 1e-06 Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 3/101 (2%) Frame = +3 Query: 3009 RRHPILNKIRAHKGVDYAAPRGT-PIRATGDGKVTLAGRK--GGYGNTVIIEHGNNQQTL 3179 R PI H +D T PI A+GDG+V AG YGN +I+H + T Sbjct: 799 RTSPITGAQEFHNAMDLVNGNPTTPILASGDGQVVQAGSNYYDWYGNYTVIKHADGLYTG 858 Query: 3180 YAHMQGFAKGIRTGSSVKXXXXXXXXXXXXLSTGPHLHYEF 3302 YAH + G +VK TGPHLH++F Sbjct: 859 YAHQSRI--DVSVGQNVKKGQQIGLMGATGPVTGPHLHFQF 897 >ref|NP_076626.1|endopeptidase Length = 894 Score = 51.2 bits (121), Expect = 1e-06 Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 3/101 (2%) Frame = +3 Query: 3009 RRHPILNKIRAHKGVDYAAPRGT-PIRATGDGKVTLAGRK--GGYGNTVIIEHGNNQQTL 3179 R PI H +D T PI A+GDG+V AG YGN +I+H + T Sbjct: 775 RTSPITGAQEFHNAMDLVNGNPTTPILASGDGQVVQAGSNYYDWYGNYTVIKHADGLYTG 834 Query: 3180 YAHMQGFAKGIRTGSSVKXXXXXXXXXXXXLSTGPHLHYEF 3302 YAH + G +VK TGPHLH++F Sbjct: 835 YAHQSRI--DVSVGQNVKKGQQIGLMGATGPVTGPHLHFQF 873 >ref|NP_108727.1|minor structural protein 3 Length = 906 Score = 49.3 bits (116), Expect = 5e-06 Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 3/101 (2%) Frame = +3 Query: 3009 RRHPILNKIRAHKGVDYAAPRGT-PIRATGDGKVTLAGRK--GGYGNTVIIEHGNNQQTL 3179 R PI H +D T PI A+ DG+V AG YGN +I+H + T Sbjct: 787 RTSPITGAQEFHNAMDLVNGNPTTPILASNDGQVVQAGSNYYNWYGNYTVIKHADGLYTG 846 Query: 3180 YAHMQGFAKGIRTGSSVKXXXXXXXXXXXXLSTGPHLHYEF 3302 YAH + G +VK TGPHLH++F Sbjct: 847 YAHQSRI--DVSVGQNVKKGQQIGLMGATGPVTGPHLHFQF 885 >ref|NP_663686.1|structural protein Length = 908 Score = 48.9 bits (115), Expect = 6e-06 Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 3/101 (2%) Frame = +3 Query: 3009 RRHPILNKIRAHKGVDYAAPRGT-PIRATGDGKVTLAGRK--GGYGNTVIIEHGNNQQTL 3179 R PI H +D T PI A+ DG+V AG YGN +I+H + T Sbjct: 789 RTSPITGAQEFHNAMDLVNGNPTTPILASNDGQVVQAGSNYYDWYGNYTVIKHADGLYTG 848 Query: 3180 YAHMQGFAKGIRTGSSVKXXXXXXXXXXXXLSTGPHLHYEF 3302 YAH + G +VK TGPHLH++F Sbjct: 849 YAHQSRI--DVSVGQNVKKGQQIGLMGATGPVTGPHLHFQF 887 >ref|NP_958675.1|reverse transcriptase Length = 328 Score = 44.3 bits (103), Expect = 1e-04 Identities = 53/191 (27%), Positives = 69/191 (36%), Gaps = 10/191 (5%) Frame = -1 Query: 5609 HSYGFRPGRRAHDAVLAAQSFVQSGRRI-VVDVDLEKFFDRVNHDILIDRLRKRIDDAGV 5433 ++Y RP + H V Q+ ++ R + D KFF ++ L + K+I A Sbjct: 105 YTYACRPDKGTHAGVCHVQAELRRTRATHFLKSDFSKFFPSIDRAALYAMIDKKIHCAAT 164 Query: 5432 IRLIRAYLSAGIMDGGVVIERDQGTPQGGPLSPLLANVLLDEVDRAL--ERRGHCFVRYA 5259 RL+R L D GV G P G S L ANV VDR L E + + RY Sbjct: 165 RRLLRVVLP----DEGV------GIPIGSLTSQLFANVYGGAVDRLLHDELKQRHWARYM 214 Query: 5258 DDCNVYVRSRRAGERVMNXXXXXXXXXXXRVNEAKSAVASAFGRKFLGYAFWAAPK---- 5091 DD V V + G FLGY W K Sbjct: 215 DDIVVLGDDPEELRAVFYRLRDFASERLGLKISHWQVAPVSRGINFLGYRIWPTHKLLRK 274 Query: 5090 ---GQVKRKVA 5067 + KRKVA Sbjct: 275 SSVKRAKRKVA 285 >ref|NP_996568.1|reverse transcriptase Length = 328 Score = 44.3 bits (103), Expect = 1e-04 Identities = 53/191 (27%), Positives = 69/191 (36%), Gaps = 10/191 (5%) Frame = -1 Query: 5609 HSYGFRPGRRAHDAVLAAQSFVQSGRRI-VVDVDLEKFFDRVNHDILIDRLRKRIDDAGV 5433 ++Y RP + H V Q+ ++ R + D KFF ++ L + K+I A Sbjct: 105 YTYACRPDKGTHAGVCHVQAELRRTRATHFLKSDFSKFFPSIDRAALYAMIDKKIHCAAT 164 Query: 5432 IRLIRAYLSAGIMDGGVVIERDQGTPQGGPLSPLLANVLLDEVDRAL--ERRGHCFVRYA 5259 RL+R L D GV G P G S L ANV VDR L E + + RY Sbjct: 165 RRLLRVVLP----DEGV------GIPIGSLTSQLFANVYGGAVDRLLHDELKQRHWARYM 214 Query: 5258 DDCNVYVRSRRAGERVMNXXXXXXXXXXXRVNEAKSAVASAFGRKFLGYAFWAAPK---- 5091 DD V V + G FLGY W K Sbjct: 215 DDIVVLGDDPEELRAVFYRLRDFASERLGLKISHWQVAPVSRGINFLGYRIWPTHKLLRK 274 Query: 5090 ---GQVKRKVA 5067 + KRKVA Sbjct: 275 SSVKRAKRKVA 285 >ref|NP_996616.1|hypothetical protein predicted by GeneMark Length = 328 Score = 44.3 bits (103), Expect = 1e-04 Identities = 53/191 (27%), Positives = 69/191 (36%), Gaps = 10/191 (5%) Frame = -1 Query: 5609 HSYGFRPGRRAHDAVLAAQSFVQSGRRI-VVDVDLEKFFDRVNHDILIDRLRKRIDDAGV 5433 ++Y RP + H V Q+ ++ R + D KFF ++ L + K+I A Sbjct: 105 YTYACRPDKGTHAGVCHVQAELRRTRATHFLKSDFSKFFPSIDRAALYAMIDKKIHCAAT 164 Query: 5432 IRLIRAYLSAGIMDGGVVIERDQGTPQGGPLSPLLANVLLDEVDRAL--ERRGHCFVRYA 5259 RL+R L D GV G P G S L ANV VDR L E + + RY Sbjct: 165 RRLLRVVLP----DEGV------GIPIGSLTSQLFANVYGGAVDRLLHDELKQRHWARYM 214 Query: 5258 DDCNVYVRSRRAGERVMNXXXXXXXXXXXRVNEAKSAVASAFGRKFLGYAFWAAPK---- 5091 DD V V + G FLGY W K Sbjct: 215 DDIVVLGDDPEELRAVFYRLRDFASERLGLKISHWQVAPVSRGINFLGYRIWPTHKLLRK 274 Query: 5090 ---GQVKRKVA 5067 + KRKVA Sbjct: 275 SSVKRAKRKVA 285 >ref|NP_758929.1|ORF37 Length = 303 Score = 43.5 bits (101), Expect = 2e-04 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 8/133 (6%) Frame = -1 Query: 5627 DPSFSEHSYGFRPGRRAHDAVLAA-QSFVQS-----GRRIVVDVDLEKFFDRVNHDILID 5466 D ++ SY R G RA L Q F++ G+ + D+ ++F ++H +L Sbjct: 97 DKTYIYDSYACRRGERAPTKALTGLQYFIKKVESKHGKAYALKADISRYFSSIDHQVLKS 156 Query: 5465 RLRKRIDDAGVIRLIRAYLSAGIMDGGVVIERDQGTPQGGPLSPLLANVLLDEVDRALER 5286 L +I + L+ I+D G P G S + ANV L E+DR + Sbjct: 157 ILEAKIQCQRTLDLLFY-----IIDNSPCESMGVGIPLGNLTSQIFANVYLHELDRYAKH 211 Query: 5285 R--GHCFVRYADD 5253 ++RY DD Sbjct: 212 ALGAKHYIRYMDD 224 >ref|YP_195243.1|hypothetical protein Length = 749 Score = 41.2 bits (95), Expect = 0.001 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 6/113 (5%) Frame = +3 Query: 2982 RISSRFSNGRRHPILNKIRAHKGVDYAAPRGTPIRATGDGKV--TLAGRKGGYGNTVIIE 3155 +I+SRF R P H G+DY P+GT + G+V + G G I+ Sbjct: 542 QITSRFGR-RASPGGVGSTNHMGIDYGTPQGTKLAIKKPGRVQKIVVPAPGNMGEVHIV- 599 Query: 3156 HGNNQQTLYAHMQGFA----KGIRTGSSVKXXXXXXXXXXXXLSTGPHLHYEF 3302 H + +T Y H+ A + G+ + STGPHLH+E+ Sbjct: 600 HDDGTETRYLHLSKVAVRQGAQVVAGTLLGETGGEPGTPGAGPSTGPHLHFEY 652 >ref|NP_803346.1|tail fiber protein Length = 2066 Score = 36.6 bits (83), Expect = 0.030 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 1/94 (1%) Frame = +3 Query: 3042 HKGVDYAAPRGTPIRATGDGKVTLAGRKGGYGNTVIIEHGNNQQTLYAHMQGFAKGIRTG 3221 H G+D+ P GT I A G G GN++ I+ G N+ Y H+ + R G Sbjct: 1707 HYGIDFGMPTGTNIYAVKGGIADKVWTDYGGGNSIQIKTGANEWNWYMHLS--KQLARQG 1764 Query: 3222 SSVK-XXXXXXXXXXXXLSTGPHLHYEFQINGTH 3320 +K G HLH++ + G+H Sbjct: 1765 QRIKAGQLIGKSGATGNFVRGAHLHFQL-MQGSH 1797 >ref|NP_075512.2|hypothetical protein Length = 2067 Score = 36.2 bits (82), Expect = 0.040 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 1/94 (1%) Frame = +3 Query: 3042 HKGVDYAAPRGTPIRATGDGKVTLAGRKGGYGNTVIIEHGNNQQTLYAHMQGFAKGIRTG 3221 H G+D+ P GT + A G G GN++ I+ G N+ Y H+ + R G Sbjct: 1708 HYGIDFGMPSGTNVYAVKGGIADKVWTDYGGGNSIQIKTGANEWNWYMHLS--KQLARQG 1765 Query: 3222 SSVK-XXXXXXXXXXXXLSTGPHLHYEFQINGTH 3320 +K G HLH++ + G+H Sbjct: 1766 QRIKAGQLIGKSGATGNFVRGAHLHFQL-MQGSH 1798 >ref|NP_777327.1|hypothetical protein Length = 196 Score = 33.9 bits (76), Expect = 0.20 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%) Frame = +3 Query: 3042 HKGVDYAAPRG------TPIRATGDGKVTLAGRKGGYGNTVIIEHGN-NQQTLYAHMQ 3194 H GVD P G P+ A DG+V +AGR +G V++ H + T Y H++ Sbjct: 50 HTGVDLNGPGGGDTDCGQPVHAMTDGRVVIAGRFPVWGGMVVLWHPSAGVWTRYGHLR 107 >ref|NP_818053.1|gp80 Length = 252 Score = 33.5 bits (75), Expect = 0.26 Identities = 21/59 (35%), Positives = 27/59 (45%) Frame = -3 Query: 5571 RGVGRAIVRAVGPADSGGRGPGEILRPGQPRHSDRPPTQTHRRRGSHPADSCVPERGDH 5395 RGVG V AV DS RG PG R +D + RRR ++ VP+ +H Sbjct: 184 RGVGTEHVHAVAQPDSSQRGAHWASEPGVDRMADGISAELDRRRLFALGNAVVPQISEH 242 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,878,414 Number of Sequences: 14420 Number of extensions: 634135 Number of successful extensions: 2084 Number of sequences better than 0.5: 22 Number of HSP's better than 0.5 without gapping: 1751 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2067 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2807649873 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig32 (10,661 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,689,188 Number of Sequences: 14420 Number of extensions: 1156375 Number of successful extensions: 4190 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 3002 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4184 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 5139273627 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig33 (11,032 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_490621.1|hypothetical protein 382 e-106 ref|NP_046778.1|gpFI 363 e-100 ref|NP_878220.1|gpFI 361 e-100 ref|NP_839870.1|gpFI 361 1e-99 ref|NP_958076.1|gp21 343 2e-94 ref|NP_052269.1|similar to P2 tail sheath protein FI, Swiss-Prot... 333 2e-91 ref|NP_490609.1|hypothetical protein 307 2e-83 ref|NP_490603.1|predicted terminase subunit 271 1e-72 ref|NP_046773.1|gpJ 262 6e-70 ref|NP_958072.1|gp17 260 2e-69 ref|NP_878215.1|gpJ 259 4e-69 ref|NP_839865.1|gpJ 258 1e-68 ref|NP_052265.1|P2 J homolog; baseplate or base of tail fibre 254 1e-67 ref|NP_758925.1|ORF32 222 6e-58 ref|NP_490617.1|predicted baseplate or base of tail fiber 213 3e-55 ref|NP_490612.1|predicted tail completion 202 5e-52 ref|NP_758931.1|ORF39 185 1e-46 ref|NP_490615.1|predicted baseplate 153 4e-37 ref|NP_046761.1|gpM 152 7e-37 ref|NP_878203.1|gpM 152 7e-37 ref|NP_052254.1|R protein 148 1e-35 ref|NP_839854.1|gpM 148 1e-35 ref|NP_958061.1|gp6 148 1e-35 ref|NP_490613.1|predicted tail completion 144 2e-34 ref|NP_490604.1|predicted capsid completion protein 132 1e-30 ref|NP_490618.1|hypothetical protein 129 9e-30 ref|NP_046768.1|gpR 122 8e-28 ref|NP_490616.1|predicted baseplate 122 8e-28 ref|NP_839861.1|gpR 119 7e-27 ref|NP_052262.1|O protein 117 2e-26 ref|NP_878211.1|gpR 117 3e-26 ref|NP_046774.1|gpI 115 7e-26 ref|NP_839866.1|gpI 115 7e-26 ref|NP_878216.1|gpI 115 1e-25 ref|NP_052261.1|N protein 114 2e-25 ref|NP_958068.1|gp13 114 2e-25 ref|NP_958069.1|gp14 113 5e-25 ref|NP_958073.1|gp18 112 8e-25 ref|NP_052266.1|Orf38; P2 I homolog; tail protein 112 1e-24 ref|NP_878214.1|gpW 109 5e-24 ref|NP_046772.1|gpW 108 1e-23 ref|NP_839864.1|gpW 108 1e-23 ref|NP_052264.1|M protein 103 4e-22 ref|NP_705653.1|gp27 102 7e-22 ref|NP_958132.2|gp27 102 7e-22 ref|NP_944336.1|gp28 102 1e-21 ref|NP_958071.1|gp16 101 1e-21 ref|NP_758926.1|ORF33 99 9e-21 ref|NP_758924.1|ORF31 96 6e-20 ref|NP_490606.1|hypothetical protein 96 8e-20 ref|NP_839862.1|gpS 93 5e-19 ref|NP_046769.1|gpS 93 7e-19 ref|NP_046762.1|gpL 92 1e-18 ref|NP_878213.1|gpV 92 1e-18 ref|NP_878212.1|gpS 92 1e-18 ref|NP_839855.1|gpL 91 3e-18 ref|NP_046771.1|gpV 90 6e-18 ref|NP_878204.1|gpL 89 1e-17 ref|YP_024712.1|gp39 88 2e-17 ref|NP_839863.1|gpV 88 2e-17 ref|NP_758923.1|ORF30 86 6e-17 ref|NP_052263.1|Orf32; P2 V homolog; baseplate protein 85 1e-16 ref|NP_958070.1|gp15 85 2e-16 ref|NP_052255.1|Q protein 84 3e-16 ref|NP_958062.1|gp7 83 5e-16 ref|NP_878205.1|gpX 80 3e-15 ref|NP_046763.1|gpX 79 1e-14 ref|NP_839856.1|gpX 79 1e-14 ref|NP_958063.1|gp8 76 7e-14 ref|NP_052256.1|Orf23; P2 X homolog; tail protein 76 9e-14 ref|NP_878217.1|gpH 74 2e-13 ref|NP_046775.1|gpH 74 4e-13 ref|NP_490611.1|hypothetical protein 73 6e-13 ref|NP_052267.1|similar to P2 tail fiber protein H, PIR Accessio... 69 1e-11 ref|NP_958074.1|gp19 68 2e-11 ref|NP_839867.1|gpH 67 3e-11 ref|YP_024723.1|gp50 67 4e-11 ref|NP_599081.1|holin 58 2e-08 ref|NP_490610.1|predicted lysis 58 2e-08 ref|NP_958067.1|gp12 55 1e-07 ref|NP_052260.1|unknown 55 2e-07 ref|NP_490619.1|hypothetical protein 53 6e-07 ref|NP_878210.1|LysC 53 8e-07 ref|NP_536651.1|putative terminase, endonuclease subunit 53 8e-07 ref|NP_757382.1|LysC 52 1e-06 ref|YP_164437.1|lysin 50 5e-06 ref|NP_758936.1|ORF45 50 7e-06 ref|NP_817703.1|gp25 49 9e-06 ref|NP_490602.1|predicted major capsid protein 49 9e-06 ref|NP_536652.1|putative head completion protein 47 3e-05 ref|NP_059621.1|inhibitor of gene 13' protein holin 46 7e-05 ref|NP_943827.1|gp49 46 9e-05 ref|NP_958235.1|gene 61 protein 45 1e-04 ref|NP_958234.1|gene 60 protein 45 1e-04 ref|NP_052253.1|major capsid protein 45 1e-04 ref|NP_040644.1|cell lysis protein 45 1e-04 ref|NP_037752.1|holin 45 1e-04 ref|NP_958060.1|gp5 45 2e-04 ref|NP_112068.1|holin 45 2e-04 ref|YP_003961.1|hypothetical protein 45 2e-04 ref|NP_046760.1|gpN 44 5e-04 ref|NP_037695.1|holin 44 5e-04 ref|NP_878202.1|gpN 44 5e-04 ref|NP_839853.1|gpN 44 5e-04 ref|YP_063731.1|Hypothetical protein 43 6e-04 ref|YP_024425.1|outer capsid protein 43 8e-04 ref|YP_024722.1|gp49 43 8e-04 ref|YP_053021.1|hypothetical protein 40 0.007 ref|NP_536825.1|packaging protein 39 0.009 ref|YP_024721.1|gp48 39 0.012 ref|NP_899586.1|gp25 39 0.015 ref|NP_803710.1|ORF144 37 0.044 ref|NP_700424.1|lysis protein (holin) 36 0.098 ref|NP_932533.1|baseplate wedge subunit 35 0.13 ref|NP_043489.1|orf20 34 0.29 ref|NP_542288.1|unknown 34 0.37 ref|NP_891745.1|baseplate wedge subunit 34 0.37 >ref|NP_490621.1|hypothetical protein Length = 391 Score = 382 bits (980), Expect = e-106 Identities = 190/286 (66%), Positives = 220/286 (76%) Frame = -3 Query: 863 YHHGIRTVELTDGTRPIRTVSTAVIGIVCTGSDADAAAFPLDTPVLLTDVQTAIGKAGDL 684 YHHG+R E+ DGTRPIRT++TA+IG+V T DADA AFPLDTPVL+T+VQ AIGKAG Sbjct: 6 YHHGVRVQEINDGTRPIRTIATAIIGLVATAEDADATAFPLDTPVLITNVQAAIGKAGTS 65 Query: 683 GTLAPSLDAIADQTNAVTXXXXXXXXXXXXXXXXXXXXVSKIVGTTTAQGQMTGLKALLA 504 GTL SL AIADQ NA T S ++G +A G+ TG+KALLA Sbjct: 66 GTLPASLQAIADQANAATVVVRVKPGEDEAATN------SAVIGGVSADGKYTGMKALLA 119 Query: 503 SQARLGVKPRLLGVPGLDSLPVATELASIAQKLRAMSYVSAWDCATKEEAVAYRDGLGAR 324 ++ARLGV PR+LGVPGLD+ PVAT L +IAQ+LRA +YVSA C TKEEA AYR+ AR Sbjct: 120 AKARLGVVPRILGVPGLDTQPVATALIAIAQQLRAFAYVSASGCKTKEEATAYRENFAAR 179 Query: 323 ETMLIWPDFLAWDTVTSSTLAAPAVARALGLRAKIDNEVGWHKTLSNVPVNGVTGISADV 144 E M+IWPDFL W TV + T+ APAVA+ALGLRA+ID EVGWHKTLSNV VNGVTGISADV Sbjct: 180 EAMVIWPDFLTWSTVVNQTVPAPAVAQALGLRARIDQEVGWHKTLSNVAVNGVTGISADV 239 Query: 143 FWDLQDPATDAGYLNENEVTTLIRRDGFRFWGSRTCSADPLFAFES 6 FWDLQ P+TDA YLNENEVTTL++ GFRFWGSRTCS DPLFAFE+ Sbjct: 240 FWDLQSPSTDANYLNENEVTTLVQEGGFRFWGSRTCSDDPLFAFEN 285 >ref|NP_046778.1|gpFI Length = 396 Score = 363 bits (931), Expect = e-100 Identities = 183/287 (63%), Positives = 211/287 (73%) Frame = -3 Query: 866 DYHHGIRTVELTDGTRPIRTVSTAVIGIVCTGSDADAAAFPLDTPVLLTDVQTAIGKAGD 687 DYHHG++ +E+ +GTR I TVSTA++G+VCT SDADA FPL+ PVL+T+VQ+AI KAG Sbjct: 3 DYHHGVQVLEINEGTRVISTVSTAIVGMVCTASDADAETFPLNKPVLITNVQSAISKAGK 62 Query: 686 LGTLAPSLDAIADQTNAVTXXXXXXXXXXXXXXXXXXXXVSKIVGTTTAQGQMTGLKALL 507 GTLA SL AIADQ+ VT VS I+GTT GQ TGLKA+L Sbjct: 63 KGTLAASLQAIADQSKPVTVVMRVEDGTGDDEETKLAQTVSNIIGTTDENGQYTGLKAML 122 Query: 506 ASQARLGVKPRLLGVPGLDSLPVATELASIAQKLRAMSYVSAWDCATKEEAVAYRDGLGA 327 A+++ GVKPR+LGVPGLD+ VA LAS+ QKLRA Y+SAW C T E AYR Sbjct: 123 AAESVTGVKPRILGVPGLDTKEVAVALASVCQKLRAFGYISAWGCKTISEVKAYRQNFSQ 182 Query: 326 RETMLIWPDFLAWDTVTSSTLAAPAVARALGLRAKIDNEVGWHKTLSNVPVNGVTGISAD 147 RE M+IWPDFLAWDTVTS+T A A ARALGLRAKID E GWHKTLSNV VNGVTGISA Sbjct: 183 RELMVIWPDFLAWDTVTSTTATAYATARALGLRAKIDQEQGWHKTLSNVGVNGVTGISAS 242 Query: 146 VFWDLQDPATDAGYLNENEVTTLIRRDGFRFWGSRTCSADPLFAFES 6 VFWDLQ+ TDA LNE+ VTTLIRRDGFRFWG+RTCS DPLF FE+ Sbjct: 243 VFWDLQESGTDADLLNESGVTTLIRRDGFRFWGNRTCSDDPLFLFEN 289 >ref|NP_878220.1|gpFI Length = 396 Score = 361 bits (927), Expect = e-100 Identities = 183/287 (63%), Positives = 210/287 (73%) Frame = -3 Query: 866 DYHHGIRTVELTDGTRPIRTVSTAVIGIVCTGSDADAAAFPLDTPVLLTDVQTAIGKAGD 687 DYHHG++ +E+ +GTR I TVSTA++G+VCT SDADA FPL+ PVL+T+VQ+AI KAG Sbjct: 3 DYHHGVQVLEINEGTRVISTVSTAIVGMVCTASDADAEIFPLNKPVLITNVQSAIAKAGK 62 Query: 686 LGTLAPSLDAIADQTNAVTXXXXXXXXXXXXXXXXXXXXVSKIVGTTTAQGQMTGLKALL 507 GTLA SL AIADQ+ VT VS I+GTT GQ TGLKALL Sbjct: 63 KGTLAASLQAIADQSKPVTVVVRVEDGTGEDEETKLAQTVSNIIGTTDENGQYTGLKALL 122 Query: 506 ASQARLGVKPRLLGVPGLDSLPVATELASIAQKLRAMSYVSAWDCATKEEAVAYRDGLGA 327 A+++ GVKPR+LGVPGLD+ VA LAS+ QKLRA Y+SAW C T E AYR Sbjct: 123 AAESVTGVKPRILGVPGLDTKEVAVALASVCQKLRAFGYISAWGCKTISEVKAYRQNFSQ 182 Query: 326 RETMLIWPDFLAWDTVTSSTLAAPAVARALGLRAKIDNEVGWHKTLSNVPVNGVTGISAD 147 RE M+IWPDFLAWDTV S+T A A ARALGLRAKID E GWHKTLSNV VNGVTGISA Sbjct: 183 RELMVIWPDFLAWDTVASTTATAYATARALGLRAKIDQEQGWHKTLSNVGVNGVTGISAS 242 Query: 146 VFWDLQDPATDAGYLNENEVTTLIRRDGFRFWGSRTCSADPLFAFES 6 VFWDLQ+ TDA LNE+ VTTLIRRDGFRFWG+RTCS DPLF FE+ Sbjct: 243 VFWDLQESGTDADLLNESGVTTLIRRDGFRFWGNRTCSDDPLFLFEN 289 >ref|NP_839870.1|gpFI Length = 396 Score = 361 bits (926), Expect = 1e-99 Identities = 182/287 (63%), Positives = 208/287 (72%) Frame = -3 Query: 866 DYHHGIRTVELTDGTRPIRTVSTAVIGIVCTGSDADAAAFPLDTPVLLTDVQTAIGKAGD 687 DYHHG++ +E+ DGTR I TVSTA++G+VCT SDADA FPL+ PVL+T+VQ+AI KAG Sbjct: 3 DYHHGVQVLEINDGTRVISTVSTAIVGMVCTASDADAETFPLNKPVLITNVQSAIAKAGK 62 Query: 686 LGTLAPSLDAIADQTNAVTXXXXXXXXXXXXXXXXXXXXVSKIVGTTTAQGQMTGLKALL 507 GTLA SL AIADQ+ VT VS I+GTT GQ TGLKAL+ Sbjct: 63 KGTLAASLQAIADQSKPVTVVVRVEDGTGDDEETKLAQTVSNIIGTTDENGQYTGLKALM 122 Query: 506 ASQARLGVKPRLLGVPGLDSLPVATELASIAQKLRAMSYVSAWDCATKEEAVAYRDGLGA 327 +++ GVKPR+LGVPGLD+ VA LAS+ Q+L A Y+SAW C T E AYR Sbjct: 123 GAESVTGVKPRILGVPGLDTKEVAVALASVCQELNAFGYISAWGCKTISEVKAYRQNFSQ 182 Query: 326 RETMLIWPDFLAWDTVTSSTLAAPAVARALGLRAKIDNEVGWHKTLSNVPVNGVTGISAD 147 RE M+IWPDFLAWDTVTS+T A A ARALGLRAKID E GWHKTLSNV VNGVTGISA Sbjct: 183 RELMVIWPDFLAWDTVTSTTATAYATARALGLRAKIDQEQGWHKTLSNVGVNGVTGISAS 242 Query: 146 VFWDLQDPATDAGYLNENEVTTLIRRDGFRFWGSRTCSADPLFAFES 6 VFWDLQ P TDA LNE VTTL+RRDGFRFWG+RTCS DPLF FES Sbjct: 243 VFWDLQKPGTDADLLNEAGVTTLVRRDGFRFWGNRTCSDDPLFLFES 289 >ref|NP_958076.1|gp21 Length = 395 Score = 343 bits (880), Expect = 2e-94 Identities = 177/287 (61%), Positives = 204/287 (71%) Frame = -3 Query: 866 DYHHGIRTVELTDGTRPIRTVSTAVIGIVCTGSDADAAAFPLDTPVLLTDVQTAIGKAGD 687 D+HHG + +E+ DGTR I TV+TAV+G+VCT SDADA FPL+ PVL+T+VQ+AI KAG Sbjct: 3 DFHHGTQVIEINDGTRVISTVATAVVGMVCTASDADATLFPLNEPVLITNVQSAIAKAGK 62 Query: 686 LGTLAPSLDAIADQTNAVTXXXXXXXXXXXXXXXXXXXXVSKIVGTTTAQGQMTGLKALL 507 GTLA SL AIADQ+ VT VS I+G T G+ TG+KALL Sbjct: 63 KGTLAASLQAIADQSKPVTVVVRVEDGTGDDEEAALAQTVSNIIGGTDENGKYTGIKALL 122 Query: 506 ASQARLGVKPRLLGVPGLDSLPVATELASIAQKLRAMSYVSAWDCATKEEAVAYRDGLGA 327 +QA GVKPR+LGVPGLD+ VA LAS A KLRA +YVSAW C T EA+ YR Sbjct: 123 TAQAVTGVKPRILGVPGLDTKEVAVALASAAIKLRAFAYVSAWGCKTISEAMEYRKNFSQ 182 Query: 326 RETMLIWPDFLAWDTVTSSTLAAPAVARALGLRAKIDNEVGWHKTLSNVPVNGVTGISAD 147 RE M+IWPDFLAWDTV ++T A A ARALGLRA ID VGWHKTLSNV V GVTGISA Sbjct: 183 RELMVIWPDFLAWDTVKNTTATAYATARALGLRAYIDQTVGWHKTLSNVGVQGVTGISAS 242 Query: 146 VFWDLQDPATDAGYLNENEVTTLIRRDGFRFWGSRTCSADPLFAFES 6 VFWDLQ TDA LNE VTTL+R+DGFRFWG+RTCS DPLF FE+ Sbjct: 243 VFWDLQASGTDADLLNEAGVTTLVRKDGFRFWGNRTCSDDPLFLFEN 289 >ref|NP_052269.1|similar to P2 tail sheath protein FI, Swiss-Prot Accession Number P22501 Length = 392 Score = 333 bits (855), Expect = 2e-91 Identities = 170/287 (59%), Positives = 202/287 (70%) Frame = -3 Query: 866 DYHHGIRTVELTDGTRPIRTVSTAVIGIVCTGSDADAAAFPLDTPVLLTDVQTAIGKAGD 687 D+HHG + +E+ DGTR I TV+TA++G+V T SDADA FPL+ PVL+T+VQ+AI KAG Sbjct: 3 DFHHGTKVIEINDGTRVISTVATAIVGMVWTASDADAETFPLNEPVLITNVQSAIAKAGK 62 Query: 686 LGTLAPSLDAIADQTNAVTXXXXXXXXXXXXXXXXXXXXVSKIVGTTTAQGQMTGLKALL 507 GTL+ SL AIADQ+ VT S I+G T G+ TG+KALL Sbjct: 63 KGTLSASLQAIADQSKPVTVVVRVAEGTGDDAEAQTT---SNIIGGTDENGKYTGIKALL 119 Query: 506 ASQARLGVKPRLLGVPGLDSLPVATELASIAQKLRAMSYVSAWDCATKEEAVAYRDGLGA 327 ++A GVKPR+LGVPGLD+ VAT LAS+ LRA YVSAW C T EA+AYR+ Sbjct: 120 TAEAVTGVKPRILGVPGLDTQEVATALASVCISLRAFGYVSAWGCKTISEAMAYRENFSQ 179 Query: 326 RETMLIWPDFLAWDTVTSSTLAAPAVARALGLRAKIDNEVGWHKTLSNVPVNGVTGISAD 147 RE M+IWPDFLAWDT ++T A A ARALGLRA ID +GWHKTLSNV V GVTGISA Sbjct: 180 RELMVIWPDFLAWDTTANATATAYATARALGLRAYIDQTIGWHKTLSNVGVQGVTGISAS 239 Query: 146 VFWDLQDPATDAGYLNENEVTTLIRRDGFRFWGSRTCSADPLFAFES 6 VFWDLQ TDA LNE VTTL+R+DGFRFWG+RTCS DPLF FE+ Sbjct: 240 VFWDLQASGTDADLLNEAGVTTLVRKDGFRFWGNRTCSDDPLFLFEN 286 >ref|NP_490609.1|hypothetical protein Length = 268 Score = 307 bits (786), Expect = 2e-83 Identities = 162/275 (58%), Positives = 187/275 (68%), Gaps = 1/275 (0%) Frame = -1 Query: 9088 TLRLDDRNLAVLTLQKQLNA-LGAGLYPDGHYGEQTEQAVRDYQRRTGLVVDGIAGPKTM 8912 TLR DR+ VL LQ++LN GA LY DGH+G TE AVR +QR GLV DGIAGPKT+ Sbjct: 2 TLRYGDRSQEVLQLQRRLNTWAGANLYEDGHFGAATEDAVRAFQRSHGLVADGIAGPKTL 61 Query: 8911 AALAGQDIGHLLKQRDLERAAERLGVPLASVLAINLVESKGNGFLDNGRPEILFERHVMR 8732 AAL G D HLL+ DL A RL +PLA++ A+N VES G GFL NG+P ILFERH+M Sbjct: 62 AALGGADCSHLLQNADLVAAGARLDLPLATIYAVNQVESNGQGFLGNGKPAILFERHIMY 121 Query: 8731 ERLLEHGYILPSLGTPEATAAALAERYPGIVNATPGGYAGGAAEHQRLAQARQIHDSAGL 8552 RL H + TA LA ++P +VN PGGYAGG AEHQRLA ARQI D+A L Sbjct: 122 RRLAAHDQV---------TADQLAAQFPALVNPRPGGYAGGTAEHQRLANARQIDDTAAL 172 Query: 8551 ESASWGLFQIMGYHWQRIGYASVQEFAHCMAENEAQQLGAFVRFIEADQALHKALKARKW 8372 ESASWG FQIMG+HWQR+GY SVQ FA M +E+ Q AFVRFI+ D ALHKALKARKW Sbjct: 173 ESASWGAFQIMGFHWQRLGYVSVQAFAESMGRSESAQFEAFVRFIDTDPALHKALKARKW 232 Query: 8371 AEFXXXXXXXXXXXNLYDVKLTRAYEQFAWLQEAA 8267 A+F NLYD KL RAYEQ A EA+ Sbjct: 233 ADFARLYNGPDYKRNLYDTKLARAYEQHANCAEAS 267 >ref|NP_490603.1|predicted terminase subunit Length = 233 Score = 271 bits (693), Expect = 1e-72 Identities = 145/227 (63%), Positives = 163/227 (71%), Gaps = 4/227 (1%) Frame = -2 Query: 10878 SPCRRHFQKVRXXXXXXXXXXXQSMAGATAYELQLLQLTTDRARLKQIQSEQGKAELKRE 10699 SP + HF +V Q M GA AYELQL QL DR+RLK IQS++GKA LK E Sbjct: 4 SPAKAHFLRVTAAQEAAATAPHQGMEGANAYELQLAQLYQDRSRLKNIQSDEGKAALKVE 63 Query: 10698 LLPAYQPYVEGVLSAGQGAQDEVLTTVMVWRMDAGDYTGALDIADYVLRHGLVMPDRFAR 10519 LLP YQPY+ GVL AG+GAQDEV+TTVM+WR+DAGDY GALDIADYVL H LVMPDRFAR Sbjct: 64 LLPVYQPYISGVLQAGKGAQDEVVTTVMLWRIDAGDYAGALDIADYVLAHDLVMPDRFAR 123 Query: 10518 TTGCLVAEEIANAALKAQKAGGAFDLAVLERTQTLTQEQDMPDEXXXXXXXXXXXXXLEG 10339 T GC++AEEIA AALKAQK GG+FDLA L RT LT + DMPDE LEG Sbjct: 124 TAGCVIAEEIAEAALKAQKTGGSFDLATLHRTLLLTDQADMPDEARAKLYLAAGHATLEG 183 Query: 10338 ---EAPGQP-RLQIGIDLLKRAIDLHGSCGGKKDLERAERLLKNIAA 10210 E+PGQP ++Q GIDLLKRAI LH CGGKKDLE AERL K + A Sbjct: 184 LSVESPGQPGQVQAGIDLLKRAIQLHDKCGGKKDLEAAERLQKKLTA 230 >ref|NP_046773.1|gpJ Length = 302 Score = 262 bits (669), Expect = 6e-70 Identities = 146/299 (48%), Positives = 187/299 (62%) Frame = -1 Query: 5605 IDLSQIPAPEVVETLDFEAILADRKARLVSYYPXXXXXXXXXXXXXESDPRTKMLQESAY 5426 IDL+Q+PAP+VVE LDFE+ILA+RKA L+S YP ES+P K+L+E+AY Sbjct: 4 IDLNQLPAPDVVEELDFESILAERKATLISLYPEDQQEAVARTLTLESEPLVKLLEENAY 63 Query: 5425 REILLRARINDAAQAVMLAYATGTDLDQLGALFGVQRLTVTEXXXXXXXXXXXVYEGDSE 5246 RE++ R R+N+AA+AVMLA A G DLD +GA + RLT+T V E D++ Sbjct: 64 RELIWRQRVNEAARAVMLACAAGNDLDVIGANYNTTRLTITPADDSTIPPTPAVMESDTD 123 Query: 5245 FRYRIQLSLEGLSVAGPEGAYIFHALSASGQVLDAXXXXXXXXXXXXXVLSREGDGTASN 5066 +R RIQ + EGLSVAG GAY +H SA G+V D VLSRE +G AS Sbjct: 124 YRLRIQQAFEGLSVAGSVGAYQYHGRSADGRVADISVTSPSPACVTISVLSRENNGVASE 183 Query: 5065 ELLATVGSALTDENVRPLTDFVEVQDAIIVSYQIEATLYFLSGPDRTVVMXXXXXXXXAY 4886 +LLA V +AL E+VRP+ D V VQ A IV YQI ATLY GP+ + AY Sbjct: 184 DLLAVVRNALNGEDVRPVADRVTVQSAAIVEYQINATLYLYPGPESEPIRAAAVKKLEAY 243 Query: 4885 TEGQHRLGLDVTLSGIYAALHQPGVQRVDLASPVANLVVDRQSASYCTAITLTDGGLDE 4709 QHRLG D+ LS IYAALH GVQRV+LA+P+A++V++ AS+CT + GG DE Sbjct: 244 ITAQHRLGRDIRLSAIYAALHVEGVQRVELAAPLADIVLNSTQASFCTEYRVVTGGSDE 302 >ref|NP_958072.1|gp17 Length = 302 Score = 260 bits (664), Expect = 2e-69 Identities = 147/299 (49%), Positives = 186/299 (62%) Frame = -1 Query: 5605 IDLSQIPAPEVVETLDFEAILADRKARLVSYYPXXXXXXXXXXXXXESDPRTKMLQESAY 5426 +DLSQ+P P+VVE LD+E ILA+R A L+S YP ES+P K+LQE+AY Sbjct: 4 VDLSQLPVPDVVEELDYETILAERIATLISLYPEDQQEAIARTLALESEPIVKLLQENAY 63 Query: 5425 REILLRARINDAAQAVMLAYATGTDLDQLGALFGVQRLTVTEXXXXXXXXXXXVYEGDSE 5246 RE++ R R+N+AA+AVMLAYA +DLD +GA F V+RL VT E D++ Sbjct: 64 REVIWRQRVNEAARAVMLAYAIDSDLDNIGANFNVERLVVTPADDTTIPHTPAEMELDAD 123 Query: 5245 FRYRIQLSLEGLSVAGPEGAYIFHALSASGQVLDAXXXXXXXXXXXXXVLSREGDGTASN 5066 +R RIQ + EGLSVAG G+Y +H SA G+V D VLSRE +G AS Sbjct: 124 YRLRIQQAFEGLSVAGSVGSYQYHGRSADGRVGDISVISPSPACVTISVLSRENNGVASE 183 Query: 5065 ELLATVGSALTDENVRPLTDFVEVQDAIIVSYQIEATLYFLSGPDRTVVMXXXXXXXXAY 4886 ELLA V +AL E+VRP+ D V VQ A IV+YQI ATLY GP+ + AY Sbjct: 184 ELLAIVRNALNAEDVRPVADRVTVQSAEIVNYQINATLYLYPGPESEPIRAAAEAKLKAY 243 Query: 4885 TEGQHRLGLDVTLSGIYAALHQPGVQRVDLASPVANLVVDRQSASYCTAITLTDGGLDE 4709 QHRLG D+ S IYAALH GVQRV+LA+PVA++V+D AS+CT +L GG DE Sbjct: 244 ISAQHRLGRDIRKSAIYAALHVEGVQRVELAAPVADIVLDNTQASFCTDYSLVIGGSDE 302 >ref|NP_878215.1|gpJ Length = 302 Score = 259 bits (662), Expect = 4e-69 Identities = 145/299 (48%), Positives = 185/299 (61%) Frame = -1 Query: 5605 IDLSQIPAPEVVETLDFEAILADRKARLVSYYPXXXXXXXXXXXXXESDPRTKMLQESAY 5426 IDL+Q+PAP+VVE LDFE ILA+RKA L+S YP ES+P K+L+E+AY Sbjct: 4 IDLNQLPAPDVVEELDFETILAERKATLISLYPEDQQEAVARTLTLESEPLVKLLEENAY 63 Query: 5425 REILLRARINDAAQAVMLAYATGTDLDQLGALFGVQRLTVTEXXXXXXXXXXXVYEGDSE 5246 RE++ R R+N+AA+AVMLA A G DLD +GA + RL +T V E D++ Sbjct: 64 RELIWRQRVNEAARAVMLACAAGNDLDVIGANYNTTRLIITPADDSTIPPTPAVMESDTD 123 Query: 5245 FRYRIQLSLEGLSVAGPEGAYIFHALSASGQVLDAXXXXXXXXXXXXXVLSREGDGTASN 5066 +R RIQ + EGLSVAG GAY +H SA G+V D VLSRE +G AS Sbjct: 124 YRLRIQQAFEGLSVAGSVGAYQYHGRSADGRVADISVTSPSPACVTISVLSRENNGVASE 183 Query: 5065 ELLATVGSALTDENVRPLTDFVEVQDAIIVSYQIEATLYFLSGPDRTVVMXXXXXXXXAY 4886 +LLA V +AL E+VRP+ D V VQ A IV YQI ATLY GP+ + AY Sbjct: 184 DLLAVVRNALNGEDVRPVADRVTVQSAAIVEYQINATLYLYPGPESEPIRAAAVKKLEAY 243 Query: 4885 TEGQHRLGLDVTLSGIYAALHQPGVQRVDLASPVANLVVDRQSASYCTAITLTDGGLDE 4709 QHRLG D+ LS IYAALH GVQRV+LA+P+A++V++ AS+CT + GG DE Sbjct: 244 ITAQHRLGRDIRLSAIYAALHVEGVQRVELAAPLADIVLNSTQASFCTEYRVVTGGSDE 302 >ref|NP_839865.1|gpJ Length = 302 Score = 258 bits (658), Expect = 1e-68 Identities = 144/299 (48%), Positives = 184/299 (61%) Frame = -1 Query: 5605 IDLSQIPAPEVVETLDFEAILADRKARLVSYYPXXXXXXXXXXXXXESDPRTKMLQESAY 5426 IDL+Q+PAP+VVE LDFE ILA+RKA L+S YP ES+P K+L+E+AY Sbjct: 4 IDLNQLPAPDVVEELDFETILAERKATLISLYPEDQQEAVARTLTLESEPLVKLLEENAY 63 Query: 5425 REILLRARINDAAQAVMLAYATGTDLDQLGALFGVQRLTVTEXXXXXXXXXXXVYEGDSE 5246 RE++ R R+N+AA+AVMLA A G DLD +GA + RL +T V E D++ Sbjct: 64 RELIWRQRVNEAARAVMLACAAGNDLDVIGANYNTTRLIITPADDSTIPPTPAVMESDTD 123 Query: 5245 FRYRIQLSLEGLSVAGPEGAYIFHALSASGQVLDAXXXXXXXXXXXXXVLSREGDGTASN 5066 +R RIQ + EGLSVAG GAY +H SA G+V D VLSRE +G AS Sbjct: 124 YRLRIQQAFEGLSVAGSVGAYQYHGRSADGRVADISVTSPSPACVTISVLSRENNGVASE 183 Query: 5065 ELLATVGSALTDENVRPLTDFVEVQDAIIVSYQIEATLYFLSGPDRTVVMXXXXXXXXAY 4886 +LLA V +AL E+VRP+ D V VQ A IV YQI ATLY GP+ + AY Sbjct: 184 DLLAVVRNALNGEDVRPVADRVTVQSAAIVEYQINATLYLYPGPESEPIRAAAVKKLEAY 243 Query: 4885 TEGQHRLGLDVTLSGIYAALHQPGVQRVDLASPVANLVVDRQSASYCTAITLTDGGLDE 4709 QHRLG D+ LS IYAALH GVQRV+L +P+A++V++ AS+CT + GG DE Sbjct: 244 ITAQHRLGRDIRLSAIYAALHVEGVQRVELTAPLADIVLNSTQASFCTEYRVVTGGSDE 302 >ref|NP_052265.1|P2 J homolog; baseplate or base of tail fibre Length = 302 Score = 254 bits (650), Expect = 1e-67 Identities = 144/299 (48%), Positives = 183/299 (61%) Frame = -1 Query: 5605 IDLSQIPAPEVVETLDFEAILADRKARLVSYYPXXXXXXXXXXXXXESDPRTKMLQESAY 5426 +DLS +P P+VVE LDFE ILA+R A L+S YP ES+P K+LQE+AY Sbjct: 4 VDLSLLPVPDVVEELDFETILAERIATLISLYPEDQQEAVARTLALESEPIVKLLQENAY 63 Query: 5425 REILLRARINDAAQAVMLAYATGTDLDQLGALFGVQRLTVTEXXXXXXXXXXXVYEGDSE 5246 RE++ R R+N+AA+A MLAYA +DLD LGA F V+RL V E D++ Sbjct: 64 REVIWRQRVNEAARAGMLAYARDSDLDNLGANFNVERLVVRPADDTTIPPTPAEMELDAD 123 Query: 5245 FRYRIQLSLEGLSVAGPEGAYIFHALSASGQVLDAXXXXXXXXXXXXXVLSREGDGTASN 5066 FR RIQ + EG+SVAG GAY FH SA G+V D VLSRE +G AS+ Sbjct: 124 FRLRIQQAFEGMSVAGSTGAYEFHGRSADGRVADISVISPSPACVTISVLSRENNGAASD 183 Query: 5065 ELLATVGSALTDENVRPLTDFVEVQDAIIVSYQIEATLYFLSGPDRTVVMXXXXXXXXAY 4886 EL + V +AL E+VRP+ D V VQ A I+ YQI ATL+ GP+ + AY Sbjct: 184 ELQSIVRNALNAEDVRPVADRVTVQSAQIIDYQIRATLFVYPGPENEPIRAAAEAKLKAY 243 Query: 4885 TEGQHRLGLDVTLSGIYAALHQPGVQRVDLASPVANLVVDRQSASYCTAITLTDGGLDE 4709 QHRLG D+ LS IYAALH GVQRV+LA+PVA++V+D+ AS+CT + GG DE Sbjct: 244 ISAQHRLGRDIRLSAIYAALHVEGVQRVELAAPVADIVLDKTQASFCTDYQIVIGGSDE 302 >ref|NP_758925.1|ORF32 Length = 311 Score = 222 bits (566), Expect = 6e-58 Identities = 132/316 (41%), Positives = 177/316 (56%), Gaps = 11/316 (3%) Frame = -1 Query: 5623 MSNFVAIDLSQIPAPEVVETLDFEAILADRKARLVSYYPXXXXXXXXXXXXXESDPRTKM 5444 M+ F +DLS++P P+++ + DFE + KA LV + P SDP Sbjct: 1 MTAFKLMDLSKVPVPDIITSPDFETKYEELKAILVGFNPDYAEVLQLE-----SDPLAGA 55 Query: 5443 LQESAYREILLRARINDAAQAVMLAYATGTDLDQLGALFGVQRLTVTEXXXXXXXXXXXV 5264 LQ AYRE++L A+INDA +A MLA + G DLD +GA + V+RL V E + Sbjct: 56 LQTFAYRELVLEAKINDATRANMLASSKGNDLDGIGARYNVERLVVQEGDELARPPIPRI 115 Query: 5263 YEGDSEFRYRIQLSLEGLSVAGPEGAYIFHALSASGQVLDAXXXXXXXXXXXXXVLSREG 5084 E D +R RIQ++ +GL+ AG + AY+FHALSASG+VLDA VLSR+G Sbjct: 116 MEDDDSYRRRIQMAFDGLNTAGSDDAYVFHALSASGKVLDADATSPSPCNMVVTVLSRDG 175 Query: 5083 DGTASNELLATVGS--ALTDE---------NVRPLTDFVEVQDAIIVSYQIEATLYFLSG 4937 +GT N+LL V LTD+ VRPL D V V A + Y + A L L G Sbjct: 176 NGTPDNDLLVAVRRYFGLTDDGLAPAKQTSKVRPLGDRVMVVPANVTEYAVVAELTILPG 235 Query: 4936 PDRTVVMXXXXXXXXAYTEGQHRLGLDVTLSGIYAALHQPGVQRVDLASPVANLVVDRQS 4757 P V+ Y +H+LG DVT SG+YAALH+PGV V L SP A+LV+D Sbjct: 236 PAGDVIRQTAEAAVLEYVNDRHKLGYDVTRSGLYAALHRPGVHNVRLISPAADLVMDNTQ 295 Query: 4756 ASYCTAITLTDGGLDE 4709 A++CT +T+T GG+DE Sbjct: 296 AAFCTGVTVTVGGVDE 311 >ref|NP_490617.1|predicted baseplate or base of tail fiber Length = 304 Score = 213 bits (542), Expect = 3e-55 Identities = 126/301 (41%), Positives = 177/301 (58%), Gaps = 1/301 (0%) Frame = -1 Query: 5620 SNFVAIDLSQIPAPEVVETLDFEAILADRKARLVSYYPXXXXXXXXXXXXXESDPRTKML 5441 +NFVAIDLSQ+P P VE LD+E ILA+RKA +S +P ES+P TK+L Sbjct: 3 TNFVAIDLSQLPPPHAVEQLDYEQILAERKAYAISLWPEDQQAEIAARLALESEPLTKLL 62 Query: 5440 QESAYREILLRARINDAAQAVMLAYATGTDLDQLGALFGVQRLTVTEXXXXXXXXXXXVY 5261 +E+AYRE+L R R+N+AA A MLA A G DLDQL A + V+RL + + Sbjct: 63 EENAYREMLWRQRVNEAALANMLASAQGADLDQLAANYNVKRLVIQPGDPSKVPPVPELL 122 Query: 5260 EGDSEFRYRIQLSLEGLSVAGPEGAYIFHALSASGQVLDAXXXXXXXXXXXXXVLSREGD 5081 E D R R Q++ EGLS AGP +YIFHA +A G+V DA V + +G+ Sbjct: 123 ESDDSLRERAQMAWEGLSTAGPRNSYIFHARAADGRVGDASAVSPSPAVVVVTVQAAQGN 182 Query: 5080 GTASNELLATVGSALTDENVRPLTDFVEVQDAIIVSYQIEATLYFLS-GPDRTVVMXXXX 4904 G+A +LLA V + L D + RP+ D + VQ A ++ Y+++ATLY + GP+ ++ Sbjct: 183 GSAPADLLAIVDAYLNDADRRPVADRLTVQSAQVLEYRVDATLYLATIGPESEPILDAAR 242 Query: 4903 XXXXAYTEGQHRLGLDVTLSGIYAALHQPGVQRVDLASPVANLVVDRQSASYCTAITLTD 4724 AY + RLG++V+ S ++AALH GV++V L S +++ A YCT ITLT Sbjct: 243 ARLTAYVHQRRRLGMEVSESAVHAALHVEGVRKVTL-SNWSDIAATPAQAPYCTGITLTL 301 Query: 4723 G 4721 G Sbjct: 302 G 302 >ref|NP_490612.1|predicted tail completion Length = 178 Score = 202 bits (515), Expect = 5e-52 Identities = 103/170 (60%), Positives = 130/170 (76%), Gaps = 2/170 (1%) Frame = -2 Query: 7557 MNKPESLRAHLLAAVPELRHDPDRLLIVIDKGRIRSTAAPGLSFEYSYTLNLLLTDFAGH 7378 MNKP+SL+AHLLAAVPELR++ DRL+I ID GR+RST+A LSFEY+Y L ++LTDFAGH Sbjct: 1 MNKPDSLKAHLLAAVPELRNNGDRLVIFIDNGRVRSTSAESLSFEYAYDLQVILTDFAGH 60 Query: 7377 PDAIAIPLLAWLQVNQSELLVNLEKGKEAIQFEAEVLANDKVDLSITLPLTERVIVKRQP 7198 PD++ +PLL WL VNQS+LL NL K ++ I FEA++L KVDL I L LTERV+VKR+ Sbjct: 61 PDSVFLPLLGWLLVNQSDLLANLTKVQDGITFEADMLDRSKVDLGIVLQLTERVVVKRRE 120 Query: 7197 DGTLQVTHAAEPQYTEQLE-STHLQVYADGELIAEWDTPEPT-GVALATP 7054 DG V+H EPQ TE +E +Q+ A+GEL+AEW P+PT V L TP Sbjct: 121 DGRYDVSHPEEPQLTEAIEVDGPMQMLANGELLAEWTPPKPTEAVMLETP 170 >ref|NP_758931.1|ORF39 Length = 386 Score = 185 bits (469), Expect = 1e-46 Identities = 111/292 (38%), Positives = 157/292 (53%), Gaps = 2/292 (0%) Frame = -3 Query: 875 MPGDYHHGIRTVELTDGTRPIRTVSTAVIGIVCTGSDADAAAFPLDTPVLLTDVQTAIGK 696 M Y HG VE+ +G RPIRT + VIG+V T DADA AFPL+TPVL+ + K Sbjct: 1 MAEQYLHGAEVVEIDNGARPIRTAQSGVIGLVGTAPDADATAFPLNTPVLIAGSRREAAK 60 Query: 695 AGDLGTLAPSLDAIADQTNAVTXXXXXXXXXXXXXXXXXXXXVSKIVGTTTAQG-QMTGL 519 G GTL ++D I DQT AV S ++G A Q TG+ Sbjct: 61 LGAGGTLPQAIDGIFDQTGAVVVVIRVDEGVDSAATQ------SNVIGKVDADTEQYTGI 114 Query: 518 KALLASQARLGVKPRLLGVPGLDSLP-VATELASIAQKLRAMSYVSAWDCATKEEAVAYR 342 ALL+++ + V+PR+L PG + VA +L S+A + + S W T A+ YR Sbjct: 115 LALLSAENTVKVQPRILIAPGFSNQKAVADQLVSVADTAAWLCH-SGWSNTTDAAAITYR 173 Query: 341 DGLGARETMLIWPDFLAWDTVTSSTLAAPAVARALGLRAKIDNEVGWHKTLSNVPVNGVT 162 + G+R ++ P + WD TS+ + P AR G+ AK+ N +G+ + SN + G+ Sbjct: 174 ELFGSRRCEVVDPWYKVWDVETSAHIIQPPSARHAGVMAKVHNTLGFWWSNSNQEILGID 233 Query: 161 GISADVFWDLQDPATDAGYLNENEVTTLIRRDGFRFWGSRTCSADPLFAFES 6 G+ V + L DP A LN EVTT I+++GFR WG RTCSAD +AF++ Sbjct: 234 GLCRPVDFKLDDPTCRANLLNAKEVTTTIQQNGFRVWGDRTCSADSKWAFKN 285 >ref|NP_490615.1|predicted baseplate Length = 190 Score = 153 bits (386), Expect = 4e-37 Identities = 85/172 (49%), Positives = 102/172 (59%), Gaps = 12/172 (6%) Frame = -3 Query: 6494 ADLTRRLENLIRLGTVAEVDPDVARCRVQXXXXXXXXXXXLAERAGFDRTWNPPSTGEQC 6315 A L+R +ENLIRLGT+A VD R RV + RAG DR WN P+ EQ Sbjct: 5 AALSRMIENLIRLGTIAAVDHAAQRVRVLTGDLLTGWLPWASPRAGADREWNAPTLNEQV 64 Query: 6314 LLLSPSGDPATGIVLLGLYSTASPAPDDSLTRHRRTYRDGAVIEYDTESHTLRATLPDGG 6135 LL SPSG A G+VL GL+S P D HR TYRDGAVIEYD+ +H LRA LP GG Sbjct: 65 LLFSPSGQTANGVVLTGLFSDLIPPNGDRDALHRTTYRDGAVIEYDSAAHHLRAVLPAGG 124 Query: 6134 QADIVAPGGVTIL------------GNVTITGLVTVTEDVIAAGISLVQHVH 6015 ++++ GG+ I+ GN T+TG VTV+ DVIA GISLV H H Sbjct: 125 TTELISDGGIRIVGDITHQGDYIQTGNQTVTGKVTVSVDVIAKGISLVGHTH 176 >ref|NP_046761.1|gpM Length = 247 Score = 152 bits (384), Expect = 7e-37 Identities = 98/249 (39%), Positives = 132/249 (53%), Gaps = 3/249 (1%) Frame = -2 Query: 10884 MTSPCRRHFQKVRXXXXXXXXXXXQSMAGATAYELQLLQLTTDRARLKQIQSEQGKAELK 10705 MTSP +RH +V + AT YE L++L D+ LK I S++ KA K Sbjct: 1 MTSPAQRHMMRVSAAMTAQREAAP--LRHATVYEQMLVKLAADQRTLKAIYSKELKAAKK 58 Query: 10704 RELLPAYQPYVEGVLSAGQGAQDEVLTTVMVWRMDAGDYTGALDIADYVLRHGLVMPDRF 10525 RELLP + P+V GVL G+GAQD++L TVM+WR+D GD GAL+IA Y L++GL MP + Sbjct: 59 RELLPFWLPWVNGVLELGKGAQDDILMTVMLWRLDTGDIAGALEIARYALKYGLTMPGKH 118 Query: 10524 ARTTGCLVAEEIANAALKAQKAGGAFDLAVLERTQTLTQEQDMPDEXXXXXXXXXXXXXL 10345 RT + EE+A AA++A AG + D +L T LT DMPDE Sbjct: 119 RRTPPYMFTEEVALAAMRAHAAGESVDTRLLTETLELTATADMPDEVRAKLHKITGLFLR 178 Query: 10344 E-GEAPGQPRLQIGIDLLKRAIDLHGSCGGKKDLERAERLLKNIAAPAAD*A--SPREPG 10174 + G+A G + L+RA L G KK++ER ER LK P A +PR+ Sbjct: 179 DGGDAAG------ALAHLQRATQLDCQAGVKKEIERLERELKPKPEPQPKAATRAPRKTR 232 Query: 10173 GGGPIQAAR 10147 P + R Sbjct: 233 SVTPAKRGR 241 >ref|NP_878203.1|gpM Length = 247 Score = 152 bits (384), Expect = 7e-37 Identities = 92/222 (41%), Positives = 123/222 (55%), Gaps = 1/222 (0%) Frame = -2 Query: 10884 MTSPCRRHFQKVRXXXXXXXXXXXQSMAGATAYELQLLQLTTDRARLKQIQSEQGKAELK 10705 MTSP +RH +V + AT YE L++L D+ LK I S++ KA K Sbjct: 1 MTSPAQRHMMRVSAAMTAQREAAP--LRHATVYEQMLVKLAADQRTLKAIYSKELKAAKK 58 Query: 10704 RELLPAYQPYVEGVLSAGQGAQDEVLTTVMVWRMDAGDYTGALDIADYVLRHGLVMPDRF 10525 RELLP + P+V GVL G+GAQD++L TVM+WR+D GD GAL+IA Y L++GL MP + Sbjct: 59 RELLPFWLPWVNGVLEQGKGAQDDILMTVMLWRLDTGDIAGALEIARYALKYGLTMPGKH 118 Query: 10524 ARTTGCLVAEEIANAALKAQKAGGAFDLAVLERTQTLTQEQDMPDEXXXXXXXXXXXXXL 10345 RT + EE+A AA++A AG + D +L T LT DMPDE Sbjct: 119 RRTPPYMFTEEVALAAMRAHAAGESVDTRLLTETLALTATADMPDEVRAKLHKITGLFLR 178 Query: 10344 E-GEAPGQPRLQIGIDLLKRAIDLHGSCGGKKDLERAERLLK 10222 + G+A G + L+RA L G KK++ER ER LK Sbjct: 179 DAGDAAG------ALAHLQRATQLDCQAGVKKEIERLERELK 214 >ref|NP_052254.1|R protein Length = 249 Score = 148 bits (374), Expect = 1e-35 Identities = 90/221 (40%), Positives = 125/221 (56%) Frame = -2 Query: 10884 MTSPCRRHFQKVRXXXXXXXXXXXQSMAGATAYELQLLQLTTDRARLKQIQSEQGKAELK 10705 MTSP +RH +V + ATAYE L++L DR LK I+S + KAE K Sbjct: 1 MTSPAQRHMMRVSASQAAQREQAP--LRHATAYEQMLVKLADDRRTLKNIRSNERKAEKK 58 Query: 10704 RELLPAYQPYVEGVLSAGQGAQDEVLTTVMVWRMDAGDYTGALDIADYVLRHGLVMPDRF 10525 RELLP Y P+V GVL+ G+GAQD+++ TVM+WR+DAGD GAL+IA Y L++GL R Sbjct: 59 RELLPFYAPWVAGVLTDGRGAQDDIVMTVMLWRLDAGDIAGALEIAPYALKYGLTSDHR- 117 Query: 10524 ARTTGCLVAEEIANAALKAQKAGGAFDLAVLERTQTLTQEQDMPDEXXXXXXXXXXXXXL 10345 RTT ++ EE+A AA + + AG + DL+ L+ T LT D+PD Sbjct: 118 -RTTPYMLVEEVALAAQRLRDAGESVDLSWLQATIDLTDGADVPDMVRARLHKVTGLTLR 176 Query: 10344 EGEAPGQPRLQIGIDLLKRAIDLHGSCGGKKDLERAERLLK 10222 + + Q +RA+ L + G +K++ER ER LK Sbjct: 177 DAGMNAEALAQ-----FQRAMQLDRNAGVRKEIERLERALK 212 >ref|NP_839854.1|gpM Length = 247 Score = 148 bits (374), Expect = 1e-35 Identities = 91/222 (40%), Positives = 123/222 (55%), Gaps = 1/222 (0%) Frame = -2 Query: 10884 MTSPCRRHFQKVRXXXXXXXXXXXQSMAGATAYELQLLQLTTDRARLKQIQSEQGKAELK 10705 MTSP +RH +V + AT YE L++L D+ LK I S++ KA K Sbjct: 1 MTSPAQRHMMRVSAAMTAQREAAP--LRHATVYEQMLVKLAADQRTLKAIYSKELKAAKK 58 Query: 10704 RELLPAYQPYVEGVLSAGQGAQDEVLTTVMVWRMDAGDYTGALDIADYVLRHGLVMPDRF 10525 RELLP + P+V GVL G+GAQD++L TVM+WR+D GD GAL+IA Y L++GL MP + Sbjct: 59 RELLPFWLPWVNGVLEQGKGAQDDILMTVMLWRLDTGDIAGALEIARYALKYGLTMPGKH 118 Query: 10524 ARTTGCLVAEEIANAALKAQKAGGAFDLAVLERTQTLTQEQDMPDEXXXXXXXXXXXXXL 10345 RT + EE+A AA++A AG + + +L T LT DMPDE Sbjct: 119 RRTPPYMFTEEVALAAMRAHAAGESVNPRLLTDTLELTATADMPDEVRAKLHKITGLFLR 178 Query: 10344 E-GEAPGQPRLQIGIDLLKRAIDLHGSCGGKKDLERAERLLK 10222 + G+A G + L+RA L G KK++ER ER LK Sbjct: 179 DAGDAAG------ALAHLQRATQLDCQAGVKKEIERLERELK 214 >ref|NP_958061.1|gp6 Length = 249 Score = 148 bits (373), Expect = 1e-35 Identities = 95/235 (40%), Positives = 130/235 (55%), Gaps = 1/235 (0%) Frame = -2 Query: 10884 MTSPCRRHFQKVRXXXXXXXXXXXQSMAGATAYELQLLQLTTDRARLKQIQSEQGKAELK 10705 MTSP +RH +V + ATAYE L++L DR LK I+S + KA K Sbjct: 1 MTSPAQRHMMRVSASQAAQREQAP--LRHATAYEQMLVKLADDRRTLKNIRSNERKAAKK 58 Query: 10704 RELLPAYQPYVEGVLSAGQGAQDEVLTTVMVWRMDAGDYTGALDIADYVLRHGLVMPDRF 10525 RELLP Y P+V GVL+ G+GAQD+++ TVM+WR+DAGD GAL+IA Y L++GL R Sbjct: 59 RELLPFYAPWVAGVLADGRGAQDDIVMTVMLWRLDAGDIAGALEIAPYALQYGLTTDHR- 117 Query: 10524 ARTTGCLVAEEIANAALKAQKAGGAFDLAVLERTQTLTQEQDMPDEXXXXXXXXXXXXXL 10345 RTT ++ EE+A AAL+ + AG + DL+ L+ T LT D+PD Sbjct: 118 -RTTPYMLVEEVALAALRLRDAGESVDLSWLQTTIDLTDGADVPDMVRARLHKVTGLTLR 176 Query: 10344 EGEAPGQPRLQIGIDLLKRAIDLHGSCGGKKDLERAERLLKNIA-APAAD*ASPR 10183 + + Q +RA+ L + G +K++ER ER LK A AP PR Sbjct: 177 DAGMNTEALAQ-----FQRAMQLDRNTGVRKEIERLERALKPKAEAPPRKTTKPR 226 >ref|NP_490613.1|predicted tail completion Length = 156 Score = 144 bits (364), Expect = 2e-34 Identities = 75/151 (49%), Positives = 99/151 (65%), Gaps = 2/151 (1%) Frame = -3 Query: 7034 MPDDLRALEDWAGALLARLDAGERRKLTRAIARDLXXXXXXXXXXXRDPDGTPYAPRKPR 6855 M D L ALEDWAG +L L+ G R L R++ARDL R+PDG+ Y PRK R Sbjct: 1 MADSLEALEDWAGPILRALEPGPRAALARSLARDLRRSQQKRVMAQRNPDGSAYEPRKKR 60 Query: 6854 KDLRGQVGRVRRR--MFAKLRQAKHLKLQSTADSIAIGFVGRVARLARVHQYGLRDRVER 6681 +LRG+ GR+RR+ MF KLR ++L+ + A +I + F GR+AR+ARVHQYGLRDR E Sbjct: 61 -ELRGKQGRIRRKIKMFQKLRTVRYLRAKGDAQAITVSFAGRIARIARVHQYGLRDRAEP 119 Query: 6680 GGPEVQYDPRQLLGLTDADLELIRDRLLEHL 6588 G PEV Y R LLG +D+E I++ +L H+ Sbjct: 120 GAPEVSYAQRLLLGFDSSDMETIQNGILAHI 150 >ref|NP_490604.1|predicted capsid completion protein Length = 153 Score = 132 bits (331), Expect = 1e-30 Identities = 74/154 (48%), Positives = 97/154 (62%) Frame = -1 Query: 10102 MSGFIANGGTVEPFVLDNDGWFPDIDAEHLRAAVRMDGSITNARLEVAAVAAMLSVNRXX 9923 MSGFIANG V +++D ++P I+ EH+RA +R+D S+ ARLEVA +AA++SVNR Sbjct: 1 MSGFIANG-PVPAGHINSDPFWPTIELEHVRANLRIDSSVDPARLEVAVIAAVISVNREL 59 Query: 9922 XXXXXXXXXXXXXXXADVPAVAIDGESERVHLYRRAVYCSAGAELAERYRSYDATAAGNQ 9743 A VP+ + SE V LY RAV + AE+AERYR YD T +GN Sbjct: 60 RAWRLEKIAAGYAELAQVPSDKVRDTSELVQLYLRAVQSATAAEVAERYRWYDTTTSGND 119 Query: 9742 RADDLTPSIDEFRRDARWAIRDLLGVTHTTVELI 9641 +A D+ +ID++RRD RWAIRD L TTVELI Sbjct: 120 KAQDIATTIDDYRRDQRWAIRDFLKRPRTTVELI 153 >ref|NP_490618.1|hypothetical protein Length = 178 Score = 129 bits (323), Expect = 9e-30 Identities = 59/145 (40%), Positives = 82/145 (56%) Frame = -2 Query: 4704 VPSLLPPNATALERGLVQASAPLGELPVPLRELWNPDTCPEHLLPWLAWSLSVDEWDGAW 4525 +PSLLP NAT LER +A A + +P+PLR+LWNP TCP LLP+LAW+ SVD WD W Sbjct: 1 MPSLLPRNATELERLAAEALAQIERVPIPLRQLWNPSTCPVALLPYLAWAFSVDRWDSTW 60 Query: 4524 TVAAQRRVIAASVEIHRRKXXXXXXXXXXXXXXXXXXLVEWWQETPPAAPHTFRAEVEID 4345 +R+VI + +H K ++EWWQ+TP P TF V++ Sbjct: 61 PERVKRQVIRDAYLVHSHKGTLSALRRVVEPVGSLTDILEWWQQTPAGVPGTFEITVDVS 120 Query: 4344 ERGIDEDLARSIERQVAMTKPVRSH 4270 + G+DE+ +ER + +PV H Sbjct: 121 DNGLDEETVLELERLLDDVRPVSRH 145 >ref|NP_046768.1|gpR Length = 155 Score = 122 bits (306), Expect = 8e-28 Identities = 66/156 (42%), Positives = 99/156 (63%) Frame = -2 Query: 7557 MNKPESLRAHLLAAVPELRHDPDRLLIVIDKGRIRSTAAPGLSFEYSYTLNLLLTDFAGH 7378 M KP+SLR L AV L+ +PD L I +D G I ST A LSFE YTLN+++TDF G Sbjct: 1 MLKPDSLRRALTDAVTVLKTNPDMLRIFVDNGSIASTLAASLSFEKRYTLNVIVTDFTGD 60 Query: 7377 PDAIAIPLLAWLQVNQSELLVNLEKGKEAIQFEAEVLANDKVDLSITLPLTERVIVKRQP 7198 D + +P+LAWL+ NQ +++ E K+ F A++ + D+SI+L LTER +V + Sbjct: 61 FDLLIVPVLAWLRENQPDIMTTDEGQKKGFTFYADINNDSSFDISISLMLTERTLVS-EV 119 Query: 7197 DGTLQVTHAAEPQYTEQLESTHLQVYADGELIAEWD 7090 DG L V + +EP E + + +++Y +GEL+++WD Sbjct: 120 DGALHVKNISEPPPPEPV-TRPMELYINGELVSKWD 154 >ref|NP_490616.1|predicted baseplate Length = 114 Score = 122 bits (306), Expect = 8e-28 Identities = 61/112 (54%), Positives = 80/112 (71%) Frame = -2 Query: 5964 MSRTTGQTIGDLEHLRQSIADILGTPIGSRVMRRDYGSLLPELIDQPLNGATVTRLYAAI 5785 M+ TG + L H+RQSIADIL T IG+RVMRR+YGS LPELID P N T ++YAA Sbjct: 1 MNAHTGGALARLAHIRQSIADILTTRIGTRVMRREYGSQLPELIDAPFNDTTRLQVYAAT 60 Query: 5784 ATALIRWEPRLRLTRVQLSPGSTSGSAAIDLTGTHVDDNAPLSLRVPLSMGA 5629 A AL+RWEPR+RL+RVQ++ + +G +++ T VD N P +L +PL MGA Sbjct: 61 AMALMRWEPRIRLSRVQITGQNLAGQVLMEIDATLVDSNEPHNLSIPLQMGA 112 >ref|NP_839861.1|gpR Length = 155 Score = 119 bits (298), Expect = 7e-27 Identities = 65/156 (41%), Positives = 97/156 (62%) Frame = -2 Query: 7557 MNKPESLRAHLLAAVPELRHDPDRLLIVIDKGRIRSTAAPGLSFEYSYTLNLLLTDFAGH 7378 M KP+SLR L AV L+ +PD L I +D G I ST A LSFE YTLN+++TDF G Sbjct: 1 MLKPDSLRRALTDAVTVLKTNPDMLRIFVDNGSIASTLATSLSFEKRYTLNVIVTDFTGD 60 Query: 7377 PDAIAIPLLAWLQVNQSELLVNLEKGKEAIQFEAEVLANDKVDLSITLPLTERVIVKRQP 7198 D + +P+LAWL+ NQ +++ K+ F A++ + D+SI+L LTER +V + Sbjct: 61 FDLLIVPVLAWLRENQPDIMTTDAGQKKGFTFYADINNDSSFDISISLMLTERTLVS-EV 119 Query: 7197 DGTLQVTHAAEPQYTEQLESTHLQVYADGELIAEWD 7090 DG L V + EP E + + +++Y +GEL+++WD Sbjct: 120 DGALHVKNIPEPPPPEPV-TRPMELYINGELVSKWD 154 >ref|NP_052262.1|O protein Length = 149 Score = 117 bits (294), Expect = 2e-26 Identities = 61/146 (41%), Positives = 89/146 (60%) Frame = -3 Query: 7025 DLRALEDWAGALLARLDAGERRKLTRAIARDLXXXXXXXXXXXRDPDGTPYAPRKPRKDL 6846 +L AL++ L+A L RRK+ IA+ L + PDGTPYA RK R+ + Sbjct: 3 ELTALQERLAGLIASLSPAARRKMAAEIAKKLRTSQQQRIKRQQAPDGTPYAARK-RQPV 61 Query: 6845 RGQVGRVRRRMFAKLRQAKHLKLQSTADSIAIGFVGRVARLARVHQYGLRDRVERGGPEV 6666 R + GR++R MFAKLR ++ +K + + + + F G+V R+ARVHQYGL+DR R +V Sbjct: 62 RSKKGRIKREMFAKLRTSRFMKAKGSDSAAVVEFTGKVQRMARVHQYGLKDRPNRNSRDV 121 Query: 6665 QYDPRQLLGLTDADLELIRDRLLEHL 6588 QY+ R LLG T D ++I D ++ HL Sbjct: 122 QYEARPLLGFTRDDEQMIEDVIISHL 147 >ref|NP_878211.1|gpR Length = 155 Score = 117 bits (292), Expect = 3e-26 Identities = 64/156 (41%), Positives = 96/156 (61%) Frame = -2 Query: 7557 MNKPESLRAHLLAAVPELRHDPDRLLIVIDKGRIRSTAAPGLSFEYSYTLNLLLTDFAGH 7378 M KP+SLR L AV L+ P+ L I +D G I ST A LSFE YTLN+++TDF G Sbjct: 1 MLKPDSLRRALTDAVTVLKTSPEMLRIFVDNGSIASTLATSLSFEKRYTLNVIVTDFTGD 60 Query: 7377 PDAIAIPLLAWLQVNQSELLVNLEKGKEAIQFEAEVLANDKVDLSITLPLTERVIVKRQP 7198 D + +P+LAWL+ NQ +++ K+ F A++ + D+SI+L LTER +V + Sbjct: 61 FDLLIVPVLAWLRENQPDIMTTDAGQKKGFTFYADINNDSSFDISISLMLTERTLVS-EV 119 Query: 7197 DGTLQVTHAAEPQYTEQLESTHLQVYADGELIAEWD 7090 DG L V + EP E + + +++Y +GEL+++WD Sbjct: 120 DGALHVKNIPEPPPPEPV-TRPVELYINGELVSKWD 154 >ref|NP_046774.1|gpI Length = 176 Score = 115 bits (289), Expect = 7e-26 Identities = 58/144 (40%), Positives = 78/144 (54%) Frame = -2 Query: 4695 LLPPNATALERGLVQASAPLGELPVPLRELWNPDTCPEHLLPWLAWSLSVDEWDGAWTVA 4516 LLP ++ LE +A A + + PV +RELWNPDTCP +LLPWLAW+ SVD WD W A Sbjct: 6 LLPTGSSPLEVAAAKACAEIEKTPVSIRELWNPDTCPANLLPWLAWAFSVDRWDEKWPEA 65 Query: 4515 AQRRVIAASVEIHRRKXXXXXXXXXXXXXXXXXXLVEWWQETPPAAPHTFRAEVEIDERG 4336 +R VI + IH K + EWW+ + P P TFR ++ + E G Sbjct: 66 TKRAVIRDAYFIHCHKGTIGAIRRVVEPLGYLINVTEWWENSDP--PGTFRLDIGVLESG 123 Query: 4335 IDEDLARSIERQVAMTKPVRSHFI 4264 I E + + +ER +A KP H I Sbjct: 124 ITEAMYQEMERLIADAKPASRHLI 147 >ref|NP_839866.1|gpI Length = 176 Score = 115 bits (289), Expect = 7e-26 Identities = 64/172 (37%), Positives = 87/172 (50%), Gaps = 1/172 (0%) Frame = -2 Query: 4695 LLPPNATALERGLVQASAPLGELPVPLRELWNPDTCPEHLLPWLAWSLSVDEWDGAWTVA 4516 LLP ++ LE +A A + + PV +RELWNPDTCP +LLPWLAW+ SVD WD W A Sbjct: 6 LLPTGSSPLEVAAAKACAEIEKTPVSIRELWNPDTCPANLLPWLAWAFSVDRWDEKWPEA 65 Query: 4515 AQRRVIAASVEIHRRKXXXXXXXXXXXXXXXXXXLVEWWQETPPAAPHTFRAEVEIDERG 4336 +R VI + IH K + EWW+ P P TFR ++ + E G Sbjct: 66 TKRAVIRDAYFIHCHKGTVGAIRRVVEPLGYLINVKEWWETNDP--PGTFRLDIGVLESG 123 Query: 4335 IDEDLARSIERQVAMTKPVRSHFI-LRLIAIGRAEVHVACAAIHGERTTVVP 4183 I E++ +ER +A KP H I L +I ++ G+ TV P Sbjct: 124 ITEEMYLEMERLIADAKPASRHLIGLNIIQDIPGYLYTGGVVCDGDVITVYP 175 >ref|NP_878216.1|gpI Length = 176 Score = 115 bits (288), Expect = 1e-25 Identities = 58/144 (40%), Positives = 78/144 (54%) Frame = -2 Query: 4695 LLPPNATALERGLVQASAPLGELPVPLRELWNPDTCPEHLLPWLAWSLSVDEWDGAWTVA 4516 LLP ++ LE +A A + + PV +RELWNPDTCP +LLPWLAW+ SVD WD W A Sbjct: 6 LLPTGSSPLEVAAAKACAEIEKTPVRIRELWNPDTCPANLLPWLAWAFSVDRWDEKWPEA 65 Query: 4515 AQRRVIAASVEIHRRKXXXXXXXXXXXXXXXXXXLVEWWQETPPAAPHTFRAEVEIDERG 4336 +R VI + IH K + EWW+ + P P TFR ++ + E G Sbjct: 66 TKRAVIRDAYFIHCHKGTIGAIRRVVEPLGYLINVTEWWENSDP--PGTFRLDIGVLESG 123 Query: 4335 IDEDLARSIERQVAMTKPVRSHFI 4264 I E + + +ER +A KP H I Sbjct: 124 ITEAMYQEMERLIADAKPASRHLI 147 >ref|NP_052261.1|N protein Length = 155 Score = 114 bits (286), Expect = 2e-25 Identities = 62/156 (39%), Positives = 98/156 (62%) Frame = -2 Query: 7557 MNKPESLRAHLLAAVPELRHDPDRLLIVIDKGRIRSTAAPGLSFEYSYTLNLLLTDFAGH 7378 M K +SLR L+ AVP+LR++PD L + D G S A LSFE Y LN+++TDF G Sbjct: 1 MQKHKSLRKALINAVPQLRNNPDMLRLFADNGHTDSRLASSLSFEKVYVLNVVVTDFTGD 60 Query: 7377 PDAIAIPLLAWLQVNQSELLVNLEKGKEAIQFEAEVLANDKVDLSITLPLTERVIVKRQP 7198 D I +P+ AWL+ +Q +++ + ++ + ++ +D +D+SI+L LTER +VK + Sbjct: 61 LDLIFVPVQAWLREHQPDIMTTDDGREKGFTWIIDINNDDSLDISISLRLTERTLVK-EV 119 Query: 7197 DGTLQVTHAAEPQYTEQLESTHLQVYADGELIAEWD 7090 G L V++A EP E L + +YA+GEL+++WD Sbjct: 120 GGALHVSYAPEPPLPE-LVKRPVAMYANGELVSQWD 154 >ref|NP_958068.1|gp13 Length = 158 Score = 114 bits (286), Expect = 2e-25 Identities = 60/156 (38%), Positives = 99/156 (63%) Frame = -2 Query: 7557 MNKPESLRAHLLAAVPELRHDPDRLLIVIDKGRIRSTAAPGLSFEYSYTLNLLLTDFAGH 7378 M K +SLR L+ AVP+LR++PD L + D G S LSFE Y LN+++TDF G Sbjct: 4 MQKHKSLRKALINAVPQLRNNPDMLRLFADNGHTDSRLESSLSFEKVYVLNVVVTDFTGD 63 Query: 7377 PDAIAIPLLAWLQVNQSELLVNLEKGKEAIQFEAEVLANDKVDLSITLPLTERVIVKRQP 7198 D I +P+ AWL+ +Q +++ + ++ + ++ +D +D+SI+L LTER +VK + Sbjct: 64 LDLIFVPVQAWLREHQPDIMTTDDGREKGFTWMIDINNDDSLDISISLRLTERTLVK-EV 122 Query: 7197 DGTLQVTHAAEPQYTEQLESTHLQVYADGELIAEWD 7090 DG L V++A EP E + + +++Y +GEL+++WD Sbjct: 123 DGALHVSYAPEPPLPEPV-TRPVELYVNGELVSKWD 157 >ref|NP_958069.1|gp14 Length = 149 Score = 113 bits (282), Expect = 5e-25 Identities = 61/146 (41%), Positives = 87/146 (59%) Frame = -3 Query: 7025 DLRALEDWAGALLARLDAGERRKLTRAIARDLXXXXXXXXXXXRDPDGTPYAPRKPRKDL 6846 +L AL++ L+A L RR++ IA+ L + PDGTPYA RK R+ + Sbjct: 3 ELTALQERLTGLIASLSPAARRQMAADIAKKLRASQQQRIRRQQAPDGTPYAARK-RQSV 61 Query: 6845 RGQVGRVRRRMFAKLRQAKHLKLQSTADSIAIGFVGRVARLARVHQYGLRDRVERGGPEV 6666 R + GR+RR MFA+LR + +K + + + + F GRV R+ARVHQYGL+DR R +V Sbjct: 62 RSKKGRIRREMFARLRTNRFMKAKGSDSAAVVEFTGRVQRMARVHQYGLKDRPNRHSRDV 121 Query: 6665 QYDPRQLLGLTDADLELIRDRLLEHL 6588 QY R LLG T D ++I D ++ HL Sbjct: 122 QYAARPLLGFTRDDEQMIEDIIIRHL 147 >ref|NP_958073.1|gp18 Length = 176 Score = 112 bits (280), Expect = 8e-25 Identities = 62/176 (35%), Positives = 87/176 (49%), Gaps = 1/176 (0%) Frame = -2 Query: 4707 NVPSLLPPNATALERGLVQASAPLGELPVPLRELWNPDTCPEHLLPWLAWSLSVDEWDGA 4528 N LLP ++ LE +A A + PV +R LWNPDTCPE+LLPWLAW+ SVD WD Sbjct: 2 NDSRLLPVGSSPLEVAAARACAEIERTPVNIRALWNPDTCPENLLPWLAWAFSVDRWDEN 61 Query: 4527 WTVAAQRRVIAASVEIHRRKXXXXXXXXXXXXXXXXXXLVEWWQETPPAAPHTFRAEVEI 4348 W +R VI + IH K + EWW+ + P P TFR ++ + Sbjct: 62 WPEGTKRAVIRDAYFIHCHKGTIGAIRRVVEPLGYVINVTEWWESSDP--PGTFRLDIGV 119 Query: 4347 DERGIDEDLARSIERQVAMTKPVRSHFI-LRLIAIGRAEVHVACAAIHGERTTVVP 4183 E GI E++ +ER +A KP H L ++ ++ + G+ TV P Sbjct: 120 LESGITEEMYFEMERLIADAKPASRHLTGLNIVQDIPGYLYTGGVSCDGDIITVYP 175 >ref|NP_052266.1|Orf38; P2 I homolog; tail protein Length = 176 Score = 112 bits (279), Expect = 1e-24 Identities = 65/178 (36%), Positives = 90/178 (50%), Gaps = 1/178 (0%) Frame = -2 Query: 4713 MSNVPSLLPPNATALERGLVQASAPLGELPVPLRELWNPDTCPEHLLPWLAWSLSVDEWD 4534 MS+V LLP ++ LE +A A + PVPLR LW+PDTCP +LLPWLAW+ SVD WD Sbjct: 1 MSDV-RLLPVGSSPLEVAAARACADIENTPVPLRRLWSPDTCPANLLPWLAWAFSVDRWD 59 Query: 4533 GAWTVAAQRRVIAASVEIHRRKXXXXXXXXXXXXXXXXXXLVEWWQETPPAAPHTFRAEV 4354 W +R VI ++ H K + EWW+ PA TFR ++ Sbjct: 60 ENWPEKTKRDVIRSAYFTHCHKGTIGAVRRVIEPLGYIINVTEWWETGDPAG--TFRLDI 117 Query: 4353 EIDERGIDEDLARSIERQVAMTKPVRSHFI-LRLIAIGRAEVHVACAAIHGERTTVVP 4183 + E GI E++ +ER +A KP H I L +I ++ + G+ TV P Sbjct: 118 GVLESGITEEMYLEMERLIADAKPASRHLIGLNIIQDIPGYMYTGGVSCDGDIITVYP 175 >ref|NP_878214.1|gpW Length = 115 Score = 109 bits (273), Expect = 5e-24 Identities = 56/110 (50%), Positives = 73/110 (66%) Frame = -2 Query: 5967 GMSRTTGQTIGDLEHLRQSIADILGTPIGSRVMRRDYGSLLPELIDQPLNGATVTRLYAA 5788 GM+R+ G T+ DLEH+ QSI DIL TP+GSRVMRRDYGSLL +IDQP A ++ A Sbjct: 7 GMNRSDGLTVTDLEHISQSIGDILRTPVGSRVMRRDYGSLLASMIDQPQTPALELQIKVA 66 Query: 5787 IATALIRWEPRLRLTRVQLSPGSTSGSAAIDLTGTHVDDNAPLSLRVPLS 5638 A+++WEPR+ L+ V + S G + LTG H D PLSL +P+S Sbjct: 67 CYMAVLKWEPRVTLSSV-TTARSFDGRMTVTLTGQHTDTGQPLSLTIPVS 115 >ref|NP_046772.1|gpW Length = 115 Score = 108 bits (270), Expect = 1e-23 Identities = 56/110 (50%), Positives = 73/110 (66%) Frame = -2 Query: 5967 GMSRTTGQTIGDLEHLRQSIADILGTPIGSRVMRRDYGSLLPELIDQPLNGATVTRLYAA 5788 GM+R+ G T+ DLEH+ QSI DIL TP+GSRVMRRDYGSLL +IDQP A ++ A Sbjct: 7 GMNRSDGLTVTDLEHISQSIGDILRTPVGSRVMRRDYGSLLASMIDQPQTPALELQIKVA 66 Query: 5787 IATALIRWEPRLRLTRVQLSPGSTSGSAAIDLTGTHVDDNAPLSLRVPLS 5638 A+++WEPR+ L+ V + S G + LTG H D PLSL +P+S Sbjct: 67 CYMAVLKWEPRVTLSSV-TTARSFDGRMTVTLTGQHNDTGQPLSLTIPVS 115 >ref|NP_839864.1|gpW Length = 115 Score = 108 bits (270), Expect = 1e-23 Identities = 56/110 (50%), Positives = 73/110 (66%) Frame = -2 Query: 5967 GMSRTTGQTIGDLEHLRQSIADILGTPIGSRVMRRDYGSLLPELIDQPLNGATVTRLYAA 5788 GM+R+ G T+ DLEH+ QSI DIL TP+GSRVMRRDYGSLL +IDQP A ++ A Sbjct: 7 GMNRSDGLTVTDLEHISQSIGDILRTPVGSRVMRRDYGSLLASMIDQPQTPALELQIKVA 66 Query: 5787 IATALIRWEPRLRLTRVQLSPGSTSGSAAIDLTGTHVDDNAPLSLRVPLS 5638 A+++WEPR+ L+ V + S G + LTG H D PLSL +P+S Sbjct: 67 CYMAVLKWEPRVTLSSV-TTARSFDGRMTVTLTGQHNDTGQPLSLTIPVS 115 >ref|NP_052264.1|M protein Length = 115 Score = 103 bits (257), Expect = 4e-22 Identities = 54/110 (49%), Positives = 70/110 (63%) Frame = -2 Query: 5967 GMSRTTGQTIGDLEHLRQSIADILGTPIGSRVMRRDYGSLLPELIDQPLNGATVTRLYAA 5788 GM+R TG I D EH+ QS+ DIL TP+GSRVMRR+YGSLL LID P N A ++ A Sbjct: 7 GMNRNTGLGISDTEHISQSMRDILLTPVGSRVMRREYGSLLSALIDMPQNPALRLQIMVA 66 Query: 5787 IATALIRWEPRLRLTRVQLSPGSTSGSAAIDLTGTHVDDNAPLSLRVPLS 5638 +A+ +WEPR+RLT + G +G +D+TG D A +S V LS Sbjct: 67 CYSAIQKWEPRIRLTSISFETGD-AGEMYVDITGMRTDTGASVSTTVSLS 115 >ref|NP_705653.1|gp27 Length = 255 Score = 102 bits (255), Expect = 7e-22 Identities = 83/263 (31%), Positives = 114/263 (43%), Gaps = 8/263 (3%) Frame = -1 Query: 9061 AVLTLQKQLNALGAGLYPDGHYGEQTEQAVRDYQRRTGLVVDGIAGPKTMAALAGQDIGH 8882 AV+ LQ +L GL G + A+R +Q G+ DG+ G +T A + + + Sbjct: 13 AVVFLQARL-----GLAQSGQFDASVATALRQWQEAHGMTPDGVYGSQTNAVMTARALP- 66 Query: 8881 LLKQRDLERAAERLGVPLASVLAINLVESKGNGFLDNGRPEILFERHVMRERLLEHGYIL 8702 D+ AA RL V ++ AI VE+ G+GFL +GRP IL ERH + +L Sbjct: 67 -----DIADAAARLNVDTPALQAIIQVETTGSGFLPDGRPRILLERHKVWAATSPAQRVL 121 Query: 8701 PSLGTPEATAAALAERYPGIVNATPGGYAGG-------AAEHQRLAQARQIH-DSAGLES 8546 LG + N TPGGYA G A E R + + D + Sbjct: 122 --LGAQDC-------------NPTPGGYATGPDANARGAGEWVRFERVAAVTGDEVAAQC 166 Query: 8545 ASWGLFQIMGYHWQRIGYASVQEFAHCMAENEAQQLGAFVRFIEADQALHKALKARKWAE 8366 SWGL Q+MG ++ G+ + A NE QL VRF L AL+A +WA Sbjct: 167 CSWGLGQVMGANYATCGFTNAVGLMFASALNERAQLDVMVRFALPQAGLLGALRAHQWAA 226 Query: 8365 FXXXXXXXXXXXNLYDVKLTRAY 8297 N YD KL+ AY Sbjct: 227 VARIWNGPNFAINQYDTKLSDAY 249 >ref|NP_958132.2|gp27 Length = 255 Score = 102 bits (255), Expect = 7e-22 Identities = 83/263 (31%), Positives = 114/263 (43%), Gaps = 8/263 (3%) Frame = -1 Query: 9061 AVLTLQKQLNALGAGLYPDGHYGEQTEQAVRDYQRRTGLVVDGIAGPKTMAALAGQDIGH 8882 AV+ LQ +L GL G + A+R +Q G+ DG+ G +T A + + + Sbjct: 13 AVVFLQARL-----GLAQSGQFDASVATALRQWQEAHGMTPDGVYGSQTNAVMTARALP- 66 Query: 8881 LLKQRDLERAAERLGVPLASVLAINLVESKGNGFLDNGRPEILFERHVMRERLLEHGYIL 8702 D+ AA RL V ++ AI VE+ G+GFL +GRP IL ERH + +L Sbjct: 67 -----DIADAAARLNVDTPALQAIIQVETTGSGFLPDGRPRILLERHKVWAATSPAQRVL 121 Query: 8701 PSLGTPEATAAALAERYPGIVNATPGGYAGG-------AAEHQRLAQARQIH-DSAGLES 8546 LG + N TPGGYA G A E R + + D + Sbjct: 122 --LGAQDC-------------NPTPGGYATGPDANARGAGEWVRFERVAAVTGDEVAAQC 166 Query: 8545 ASWGLFQIMGYHWQRIGYASVQEFAHCMAENEAQQLGAFVRFIEADQALHKALKARKWAE 8366 SWGL Q+MG ++ G+ + A NE QL VRF L AL+A +WA Sbjct: 167 CSWGLGQVMGANYATCGFTNAVGLMFASALNERAQLDVMVRFALPQAGLLGALRAHQWAA 226 Query: 8365 FXXXXXXXXXXXNLYDVKLTRAY 8297 N YD KL+ AY Sbjct: 227 VARIWNGPNFAINQYDTKLSDAY 249 >ref|NP_944336.1|gp28 Length = 255 Score = 102 bits (253), Expect = 1e-21 Identities = 80/256 (31%), Positives = 112/256 (43%), Gaps = 1/256 (0%) Frame = -1 Query: 9061 AVLTLQKQLNALGAGLYPDGHYGEQTEQAVRDYQRRTGLVVDGIAGPKTMAALAGQDIGH 8882 AV+ LQ +L GL G + A+R +Q G+ DG+ G +T A + + + Sbjct: 13 AVVFLQARL-----GLAQSGQFDASVATALRQWQEAHGMTPDGVYGSQTNAVMTARALS- 66 Query: 8881 LLKQRDLERAAERLGVPLASVLAINLVESKGNGFLDNGRPEILFERHVMRERLLEHGYIL 8702 D+ AA RL V + + AI VE+ G+GFL +GRP IL ERH + +L Sbjct: 67 -----DIADAAARLRVDVPAFQAIIQVETMGSGFLPDGRPRILLERHKVWAATSPAQRVL 121 Query: 8701 PSLGTPEATAAALAERYPGIVNATPGGYAGGAAEHQRLAQARQIH-DSAGLESASWGLFQ 8525 LG + + PG P A GA E R + + D + SWGL Q Sbjct: 122 --LGAQDCSPT------PGGYATGPDADARGAGEWVRFERVAAVTGDEVAAQCCSWGLGQ 173 Query: 8524 IMGYHWQRIGYASVQEFAHCMAENEAQQLGAFVRFIEADQALHKALKARKWAEFXXXXXX 8345 +MG ++ G+ + A NE QL VRF L AL+A +WA Sbjct: 174 VMGANYATCGFTNAVGLMFASALNERAQLDVMVRFALPQAGLLGALRAHQWAAVARIWNG 233 Query: 8344 XXXXXNLYDVKLTRAY 8297 N YD KL +AY Sbjct: 234 PNFAINQYDTKLDKAY 249 >ref|NP_958071.1|gp16 Length = 115 Score = 101 bits (252), Expect = 1e-21 Identities = 54/110 (49%), Positives = 69/110 (62%) Frame = -2 Query: 5967 GMSRTTGQTIGDLEHLRQSIADILGTPIGSRVMRRDYGSLLPELIDQPLNGATVTRLYAA 5788 GM+R TG I D EH+ QS+ DIL TP+GSRVMRR+YGSLL LID P N A ++ A Sbjct: 7 GMNRNTGIGISDSEHISQSMRDILLTPVGSRVMRREYGSLLSALIDMPQNPALRLQIMVA 66 Query: 5787 IATALIRWEPRLRLTRVQLSPGSTSGSAAIDLTGTHVDDNAPLSLRVPLS 5638 +A+ +WEPR+RL + G T G +D+TG D A +S V LS Sbjct: 67 CYSAIQKWEPRIRLISISFERGDT-GEMYVDITGMRTDTGASVSTTVSLS 115 >ref|NP_758926.1|ORF33 Length = 247 Score = 99.0 bits (245), Expect = 9e-21 Identities = 52/130 (40%), Positives = 69/130 (53%) Frame = -2 Query: 4713 MSNVPSLLPPNATALERGLVQASAPLGELPVPLRELWNPDTCPEHLLPWLAWSLSVDEWD 4534 MSN SLLPPNA+ LER + Q +LP+ +++LWNP +C LLPWLAW+LSVDEWD Sbjct: 1 MSN--SLLPPNASGLERDIEQVIVQSTDLPIRIKDLWNPYSCHLSLLPWLAWALSVDEWD 58 Query: 4533 GAWTVAAQRRVIAASVEIHRRKXXXXXXXXXXXXXXXXXXLVEWWQETPPAAPHTFRAEV 4354 W +R+V+ S ++HR K L EWW+ P T Sbjct: 59 DRWPEHIKRQVVQDSFDVHRFKGTPYAVQKALDSLNIKTHLREWWEPDGSQEPGTMTVVA 118 Query: 4353 EIDERGIDED 4324 I+E D+D Sbjct: 119 LINENLTDDD 128 >ref|NP_758924.1|ORF31 Length = 109 Score = 96.3 bits (238), Expect = 6e-20 Identities = 51/96 (53%), Positives = 65/96 (67%) Frame = -2 Query: 5964 MSRTTGQTIGDLEHLRQSIADILGTPIGSRVMRRDYGSLLPELIDQPLNGATVTRLYAAI 5785 M+ TG + + HLRQS+ +IL TP+GSRV RR+YGS L +LIDQP N A +YAA Sbjct: 1 MNAQTGVVLSGVSHLRQSVLNILTTPLGSRVYRREYGSRLFDLIDQPTNEAWAVEVYAAT 60 Query: 5784 ATALIRWEPRLRLTRVQLSPGSTSGSAAIDLTGTHV 5677 A AL RWEPR+RL RVQ+ +GS IDL G ++ Sbjct: 61 AEALARWEPRIRLKRVQVY-RQDNGSMLIDLEGEYL 95 >ref|NP_490606.1|hypothetical protein Length = 69 Score = 95.9 bits (237), Expect = 8e-20 Identities = 48/70 (68%), Positives = 56/70 (80%), Gaps = 1/70 (1%) Frame = -3 Query: 9638 MATVIAHQGDTLDALCWRHYGRTASVVEAVLEANPGLADLGPILPHGQRVTLPE-QAPQP 9462 MATVIA+Q DT++ALCWRHYGRTA V EAVLEAN GLAD GP LP G +VT+P+ P Sbjct: 1 MATVIANQSDTVEALCWRHYGRTAGVTEAVLEANHGLADHGPTLPPGLKVTMPDIPTAAP 60 Query: 9461 QRQGLVNLWD 9432 +RQ +VNLWD Sbjct: 61 ERQ-MVNLWD 69 >ref|NP_839862.1|gpS Length = 150 Score = 93.2 bits (230), Expect = 5e-19 Identities = 49/148 (33%), Positives = 86/148 (58%), Gaps = 1/148 (0%) Frame = -3 Query: 7028 DDLRALEDWAGALLARLDAGERRKLTRAIARDLXXXXXXXXXXXRDPDGTPYAPRKPRKD 6849 ++ + ED L+ L RR+L+ +A+ L + PDGTPYAPR+ ++ Sbjct: 2 NEFKRFEDRLTGLIESLSPSGRRRLSAELAKRLRQSQQRRVMAQKAPDGTPYAPRQ-QQS 60 Query: 6848 LRGQVGRVRRRMFAKLRQAKHLKLQSTADSIAIGFVG-RVARLARVHQYGLRDRVERGGP 6672 R + GRV+R+MFAKL ++ L ++++ + ++ F G + ++A VHQ+GL + + G Sbjct: 61 ARKKTGRVKRKMFAKLITSRFLHIRASPEQASMEFYGGKSPKIASVHQFGLSEETRKDGK 120 Query: 6671 EVQYDPRQLLGLTDADLELIRDRLLEHL 6588 ++ Y R LLG T D+++I + +L HL Sbjct: 121 KIDYPARPLLGFTGEDVQMIEEIILAHL 148 >ref|NP_046769.1|gpS Length = 150 Score = 92.8 bits (229), Expect = 7e-19 Identities = 49/148 (33%), Positives = 87/148 (58%), Gaps = 1/148 (0%) Frame = -3 Query: 7028 DDLRALEDWAGALLARLDAGERRKLTRAIARDLXXXXXXXXXXXRDPDGTPYAPRKPRKD 6849 ++ + ED L+ L RR+L+ +A+ L + PDGTPYAPR+ ++ Sbjct: 2 NEFKRFEDRLTGLIESLSPSGRRRLSAELAKRLRQSQQRRVMAQKAPDGTPYAPRQ-QQS 60 Query: 6848 LRGQVGRVRRRMFAKLRQAKHLKLQSTADSIAIGFVG-RVARLARVHQYGLRDRVERGGP 6672 +R + GRV+R+MFAKL ++ L ++++ + ++ F G + ++A VHQ+GL + + G Sbjct: 61 VRKKTGRVKRKMFAKLITSRFLHIRASPEQASMEFYGGKSPKIASVHQFGLSEENRKDGK 120 Query: 6671 EVQYDPRQLLGLTDADLELIRDRLLEHL 6588 ++ Y R LLG T D+++I + +L HL Sbjct: 121 KIDYPARPLLGFTGEDVQMIEEIILAHL 148 >ref|NP_046762.1|gpL Length = 169 Score = 92.0 bits (227), Expect = 1e-18 Identities = 54/140 (38%), Positives = 73/140 (52%) Frame = -1 Query: 10060 VLDNDGWFPDIDAEHLRAAVRMDGSITNARLEVAAVAAMLSVNRXXXXXXXXXXXXXXXX 9881 V+ N +FPDID + +R +R++ ++ ARL A + M N Sbjct: 30 VIKNTFFFPDIDPKRVRERMRLEQTVAPARLREAIKSGMAETNAELYEYREQKIAAGFTR 89 Query: 9880 XADVPAVAIDGESERVHLYRRAVYCSAGAELAERYRSYDATAAGNQRADDLTPSIDEFRR 9701 ADVPA IDGES +V Y RAV A A L ERYR DA+A G+++AD + +IDE R Sbjct: 90 LADVPADDIDGESIKVFYYERAVCAMATASLYERYRGVDASAKGDKKADSIDSTIDELWR 149 Query: 9700 DARWAIRDLLGVTHTTVELI 9641 D RWA+ + G V I Sbjct: 150 DMRWAVARIQGKPRCIVSQI 169 >ref|NP_878213.1|gpV Length = 211 Score = 92.0 bits (227), Expect = 1e-18 Identities = 60/150 (40%), Positives = 76/150 (50%), Gaps = 1/150 (0%) Frame = -3 Query: 6500 NTADLTRRLENLIRLGTVAEVDPDVARCRVQXXXXXXXXXXXLAERAGFDRTWNPPSTGE 6321 N +L R L N+IR G + E D + RCRVQ L RAG RTW PS GE Sbjct: 6 NIQELARALRNMIRTGIIVETDLNAGRCRVQTGGMCTDWLQWLTHRAGRSRTWWAPSVGE 65 Query: 6320 QCLLLSPSGDPATGIVLLGLYSTASPAPDDSLTRHRRTYRDGAVIEYDTESHTLRATLPD 6141 Q L+L+ G+ T VL G+YS +PAP S + DGAVIEY+ E+ L A+ Sbjct: 66 QVLILAVGGELDTAFVLPGIYSGDNPAPSASADALHIRFPDGAVIEYEPETSALTAS--G 123 Query: 6140 GGQADIVAPGGVT-ILGNVTITGLVTVTED 6054 A + A G VT + VT+ VT D Sbjct: 124 IKTASVTASGSVTATVPVVTVKASTRVTLD 153 >ref|NP_878212.1|gpS Length = 150 Score = 92.0 bits (227), Expect = 1e-18 Identities = 49/148 (33%), Positives = 86/148 (58%), Gaps = 1/148 (0%) Frame = -3 Query: 7028 DDLRALEDWAGALLARLDAGERRKLTRAIARDLXXXXXXXXXXXRDPDGTPYAPRKPRKD 6849 ++ + ED L+ L RR+L+ +A+ L + PDGTPYAPR+ ++ Sbjct: 2 NEFKRFEDRLTGLIESLSPSGRRRLSAELAKRLRQSQQRRVMAQKAPDGTPYAPRQ-QQS 60 Query: 6848 LRGQVGRVRRRMFAKLRQAKHLKLQSTADSIAIGFVG-RVARLARVHQYGLRDRVERGGP 6672 R + GRV+R+MFAKL ++ L ++++ + ++ F G + ++A VHQ+GL + + G Sbjct: 61 ARKKTGRVKRKMFAKLITSRFLHIRASPEQASMEFYGGKSPKIASVHQFGLSEENRKDGK 120 Query: 6671 EVQYDPRQLLGLTDADLELIRDRLLEHL 6588 ++ Y R LLG T D+++I + +L HL Sbjct: 121 KIDYPARPLLGFTGEDVQMIEEIILAHL 148 >ref|NP_839855.1|gpL Length = 169 Score = 90.5 bits (223), Expect = 3e-18 Identities = 51/126 (40%), Positives = 69/126 (54%) Frame = -1 Query: 10060 VLDNDGWFPDIDAEHLRAAVRMDGSITNARLEVAAVAAMLSVNRXXXXXXXXXXXXXXXX 9881 V+ N +FPDID + +R +R++ ++ ARL A + M N Sbjct: 30 VIKNTFFFPDIDPKRVRERMRLEQTVAPARLREAIKSGMAETNAELYEYREQKIAAGFTC 89 Query: 9880 XADVPAVAIDGESERVHLYRRAVYCSAGAELAERYRSYDATAAGNQRADDLTPSIDEFRR 9701 ADVPA IDGES +V Y RAV A A L ERYR DA+A G+++AD + +IDE R Sbjct: 90 LADVPADDIDGESIKVFYYERAVCAMATASLYERYRGVDASAKGDKKADSIDSTIDELWR 149 Query: 9700 DARWAI 9683 D RWA+ Sbjct: 150 DMRWAV 155 >ref|NP_046771.1|gpV Length = 211 Score = 89.7 bits (221), Expect = 6e-18 Identities = 54/133 (40%), Positives = 69/133 (51%) Frame = -3 Query: 6500 NTADLTRRLENLIRLGTVAEVDPDVARCRVQXXXXXXXXXXXLAERAGFDRTWNPPSTGE 6321 N +L R L N+IR G + E D + RCRVQ L RAG RTW PS GE Sbjct: 6 NIQELARALRNMIRTGIIVETDLNAGRCRVQTGGMCTDWLQWLTHRAGRSRTWWAPSVGE 65 Query: 6320 QCLLLSPSGDPATGIVLLGLYSTASPAPDDSLTRHRRTYRDGAVIEYDTESHTLRATLPD 6141 Q L+L+ G+ T VL G+YS +P+P S + DGAVIEY+ E+ L T+ Sbjct: 66 QVLILAVGGELDTAFVLPGIYSGDNPSPSVSADALHIRFPDGAVIEYEPETSAL--TVSG 123 Query: 6140 GGQADIVAPGGVT 6102 A + A G VT Sbjct: 124 IKTASVTASGSVT 136 >ref|NP_878204.1|gpL Length = 169 Score = 88.6 bits (218), Expect = 1e-17 Identities = 50/126 (39%), Positives = 68/126 (53%) Frame = -1 Query: 10060 VLDNDGWFPDIDAEHLRAAVRMDGSITNARLEVAAVAAMLSVNRXXXXXXXXXXXXXXXX 9881 V+ N +FPDID + +R +R++ ++ ARL A + M N Sbjct: 30 VIKNTFFFPDIDPKRVRERMRLEQTVAPARLREAIKSGMAETNAELYEYREQKIAAGFTR 89 Query: 9880 XADVPAVAIDGESERVHLYRRAVYCSAGAELAERYRSYDATAAGNQRADDLTPSIDEFRR 9701 ADVPA IDGES +V Y RAV A A L ERYR DA+A G+++ D + +IDE R Sbjct: 90 LADVPADDIDGESIKVFYYERAVCAMATASLYERYRGVDASAKGDKKPDSIDSTIDELWR 149 Query: 9700 DARWAI 9683 D RWA+ Sbjct: 150 DMRWAV 155 >ref|YP_024712.1|gp39 Length = 477 Score = 87.8 bits (216), Expect = 2e-17 Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 10/186 (5%) Frame = -3 Query: 560 IVGTTTAQGQMTGLKALLASQARLGVKPRLLGVPGLDSL-PVATELASIAQKLRAMSYVS 384 I+G A G TG+KAL + G ++L P + V+ EL ++A +L A++Y+ Sbjct: 176 IIGAVNAAGMRTGMKALKDTYNLYGYFSKILIAPAYCTQNSVSVELEAMAVQLGAIAYID 235 Query: 383 AWDCATKEEAVAYRDGLG-------ARETMLIWPDFLAWDTVTSSTLAAPAVARALGLRA 225 A T +A+A R G + L +P +DT T++ P +RA GLRA Sbjct: 236 APIGTTLAQALAGRGPAGTINFNTSSDRVRLCYPHVKVYDTATNAERLEPLSSRAAGLRA 295 Query: 224 KIDNEVGWHKTLSNVPVNGVTGISADVFWDLQDPATDAGYLNENEVTTLIRR--DGFRFW 51 ++D + G+ + SN + GVTG+ + + DP +D LNE +TT+ G R W Sbjct: 296 RVDLDKGYWWSSSNQQLVGVTGVERPLSAMIDDPQSDVNMLNEQGITTVFSSYGSGLRLW 355 Query: 50 GSRTCS 33 G+RT + Sbjct: 356 GNRTAA 361 Score = 46.2 bits (108), Expect = 7e-05 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Frame = -3 Query: 875 MPGDYHHGIRTVELTDGTRPIRTVSTAVIGIVCTGSDADAAAFPLDTPV-LLTDVQTA-I 702 M +Y HG+ T+E G+RP++ V +AVIG++ T A P++TPV L+DV A Sbjct: 1 MAANYLHGVETIEKETGSRPVKVVKSAVIGLIGT-----APIGPVNTPVQSLSDVDAAQF 55 Query: 701 GKAGDLGTLAPSLDAIAD 648 G T+ +LDA+ D Sbjct: 56 GPQLAGFTIPQALDAVYD 73 >ref|NP_839863.1|gpV Length = 211 Score = 87.8 bits (216), Expect = 2e-17 Identities = 54/133 (40%), Positives = 68/133 (51%) Frame = -3 Query: 6500 NTADLTRRLENLIRLGTVAEVDPDVARCRVQXXXXXXXXXXXLAERAGFDRTWNPPSTGE 6321 N +L R L N+IR G + E D + RCRVQ L RAG RTW PS GE Sbjct: 6 NIQELARALRNMIRPGIIVETDLNAGRCRVQTGGMCTDWLQWLTHRAGRSRTWWAPSVGE 65 Query: 6320 QCLLLSPSGDPATGIVLLGLYSTASPAPDDSLTRHRRTYRDGAVIEYDTESHTLRATLPD 6141 Q L+L+ G+ T VL G+YS +PAP S + DGAVIEY+ E+ L T+ Sbjct: 66 QVLILAVGGELDTAFVLPGIYSGDNPAPSASADALHIRFPDGAVIEYEPETSAL--TVSG 123 Query: 6140 GGQADIVAPGGVT 6102 A + A VT Sbjct: 124 IKTASVTASDSVT 136 >ref|NP_758923.1|ORF30 Length = 205 Score = 86.3 bits (212), Expect = 6e-17 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 1/143 (0%) Frame = -3 Query: 6524 RAASMAAMNTADLTRRLENLIRLGTVAEVDPDVARCRVQXXXXXXXXXXXLAERAGFDRT 6345 R SM + A++ R L L+R+ TV + + + +V +RAG DR Sbjct: 2 RRQSMQGLQIAEIERLLHGLVRVCTVTD-HGEGGQVKVTDGELNSTWLDRAVDRAGEDRE 60 Query: 6344 WNPPSTGEQCLLLSPSGDPATGIVLLGLYSTASPAPDDSLTRHRRTYRDGAVIEYDTESH 6165 W P GEQ ++L PSGD A GI++ LY PAP +L R+ ++DG+V+ YD ESH Sbjct: 61 WKPLDIGEQVVVLCPSGDFAQGIIIASLYQEGHPAPSSNLNEERKVFKDGSVVSYDRESH 120 Query: 6164 TLRATLPDG-GQADIVAPGGVTI 6099 + D+++ G + I Sbjct: 121 RYLLDVKGADATVDVISAGTLNI 143 >ref|NP_052263.1|Orf32; P2 V homolog; baseplate protein Length = 213 Score = 85.1 bits (209), Expect = 1e-16 Identities = 54/130 (41%), Positives = 67/130 (51%) Frame = -3 Query: 6491 DLTRRLENLIRLGTVAEVDPDVARCRVQXXXXXXXXXXXLAERAGFDRTWNPPSTGEQCL 6312 +L R + NLIR G V EVD CRVQ L RAG RTW PS GEQ L Sbjct: 9 ELARAIRNLIRSGVVTEVDTVQGLCRVQSGGIQTTWLNWLTTRAGRSRTWWAPSLGEQVL 68 Query: 6311 LLSPSGDPATGIVLLGLYSTASPAPDDSLTRHRRTYRDGAVIEYDTESHTLRATLPDGGQ 6132 LL+ G+ T VL G++S +PAP S + DGAVIEY+ E+ L T+ Sbjct: 69 LLAIGGELDTAFVLPGIFSDDNPAPSASADAWHVVFPDGAVIEYEPETSAL--TVRGIKT 126 Query: 6131 ADIVAPGGVT 6102 AD+ A +T Sbjct: 127 ADVTASESIT 136 >ref|NP_958070.1|gp15 Length = 213 Score = 84.7 bits (208), Expect = 2e-16 Identities = 53/130 (40%), Positives = 67/130 (51%) Frame = -3 Query: 6491 DLTRRLENLIRLGTVAEVDPDVARCRVQXXXXXXXXXXXLAERAGFDRTWNPPSTGEQCL 6312 +L R + NLIR G V EVD CRVQ L RAG RTW PS GEQ L Sbjct: 9 ELARAIRNLIRSGVVTEVDTAQGLCRVQSGGIQTAWLNWLTTRAGRSRTWWAPSVGEQVL 68 Query: 6311 LLSPSGDPATGIVLLGLYSTASPAPDDSLTRHRRTYRDGAVIEYDTESHTLRATLPDGGQ 6132 LL+ G+ T VL G++S +PAP S + DGAV+EY+ E+ L T+ Sbjct: 69 LLAIGGELDTAFVLPGIFSDDNPAPSASADAWHVVFPDGAVMEYEPETGAL--TVSGIKT 126 Query: 6131 ADIVAPGGVT 6102 AD+ A +T Sbjct: 127 ADVTASESIT 136 >ref|NP_052255.1|Q protein Length = 168 Score = 84.0 bits (206), Expect = 3e-16 Identities = 47/129 (36%), Positives = 69/129 (53%) Frame = -1 Query: 10060 VLDNDGWFPDIDAEHLRAAVRMDGSITNARLEVAAVAAMLSVNRXXXXXXXXXXXXXXXX 9881 V+ N +FPD+D + +R +R++ ++++ARL A M N Sbjct: 29 VIKNTFFFPDVDPKRVRELMRLEQTVSDARLRNAIKTGMAETNAELYDYRLRQTAAGFKQ 88 Query: 9880 XADVPAVAIDGESERVHLYRRAVYCSAGAELAERYRSYDATAAGNQRADDLTPSIDEFRR 9701 ADVPA IDGE+ RV Y AV A A L ERYR +AT G+++AD + +ID+ R Sbjct: 89 LADVPAEEIDGENVRVFHYLSAVTAMATATLYERYRGVEATGKGDKKADSVETTIDDLWR 148 Query: 9700 DARWAIRDL 9674 D RW++ L Sbjct: 149 DMRWSVARL 157 >ref|NP_958062.1|gp7 Length = 168 Score = 83.2 bits (204), Expect = 5e-16 Identities = 46/129 (35%), Positives = 69/129 (53%) Frame = -1 Query: 10060 VLDNDGWFPDIDAEHLRAAVRMDGSITNARLEVAAVAAMLSVNRXXXXXXXXXXXXXXXX 9881 V+ N +FPD+D + +R +R++ ++++ARL A M N Sbjct: 29 VIKNTFFFPDVDPKRVRELMRLEQTVSDARLRHAIRTGMAETNAELYDYRLRQTAAGFKH 88 Query: 9880 XADVPAVAIDGESERVHLYRRAVYCSAGAELAERYRSYDATAAGNQRADDLTPSIDEFRR 9701 ADVPA IDGE+ R+ Y AV A A L ERYR +AT G+++AD + +ID+ R Sbjct: 89 LADVPAEEIDGENVRIFHYLSAVTAMATATLYERYRGVEATGKGDKKADSVETTIDDLWR 148 Query: 9700 DARWAIRDL 9674 D RW++ L Sbjct: 149 DMRWSVARL 157 >ref|NP_878205.1|gpX Length = 67 Score = 80.5 bits (197), Expect = 3e-15 Identities = 40/64 (62%), Positives = 47/64 (73%) Frame = -3 Query: 9623 AHQGDTLDALCWRHYGRTASVVEAVLEANPGLADLGPILPHGQRVTLPEQAPQPQRQGLV 9444 A QGDTLDA+C R+YGRT VVEAVL ANPGLA+LG +LPHG V LP+ P + V Sbjct: 5 ALQGDTLDAICVRYYGRTEGVVEAVLAANPGLAELGAVLPHGTAVELPDVQTAPVAE-TV 63 Query: 9443 NLWD 9432 NLW+ Sbjct: 64 NLWE 67 >ref|NP_046763.1|gpX Length = 67 Score = 79.0 bits (193), Expect = 1e-14 Identities = 39/64 (60%), Positives = 46/64 (71%) Frame = -3 Query: 9623 AHQGDTLDALCWRHYGRTASVVEAVLEANPGLADLGPILPHGQRVTLPEQAPQPQRQGLV 9444 A QGDTLDA+C R+YGRT VVE VL ANPGLA+LG +LPHG V LP+ P + V Sbjct: 5 ALQGDTLDAICVRYYGRTEGVVETVLAANPGLAELGAVLPHGTAVELPDVQTAPVAE-TV 63 Query: 9443 NLWD 9432 NLW+ Sbjct: 64 NLWE 67 >ref|NP_839856.1|gpX Length = 67 Score = 78.6 bits (192), Expect = 1e-14 Identities = 39/64 (60%), Positives = 46/64 (71%) Frame = -3 Query: 9623 AHQGDTLDALCWRHYGRTASVVEAVLEANPGLADLGPILPHGQRVTLPEQAPQPQRQGLV 9444 A QGDTLDA+C R+YGRT VVE VL ANPGLA+LG +LPHG V LP+ P + V Sbjct: 5 ALQGDTLDAICVRYYGRTEGVVETVLAANPGLAELGVVLPHGTAVELPDVQTAPVAE-TV 63 Query: 9443 NLWD 9432 NLW+ Sbjct: 64 NLWE 67 >ref|NP_958063.1|gp8 Length = 67 Score = 76.3 bits (186), Expect = 7e-14 Identities = 34/62 (54%), Positives = 45/62 (72%) Frame = -3 Query: 9617 QGDTLDALCWRHYGRTASVVEAVLEANPGLADLGPILPHGQRVTLPEQAPQPQRQGLVNL 9438 QGDTLD +C R+YGRT +VE VL+ANPGL++LG ILPHG + LP+ P + +NL Sbjct: 7 QGDTLDVICARYYGRTEGIVETVLQANPGLSELGVILPHGTAIELPDVPSSPVTE-TINL 65 Query: 9437 WD 9432 W+ Sbjct: 66 WE 67 >ref|NP_052256.1|Orf23; P2 X homolog; tail protein Length = 67 Score = 75.9 bits (185), Expect = 9e-14 Identities = 35/62 (56%), Positives = 46/62 (74%) Frame = -3 Query: 9617 QGDTLDALCWRHYGRTASVVEAVLEANPGLADLGPILPHGQRVTLPEQAPQPQRQGLVNL 9438 QGDTLD +C R+YGRT VVE VL+ANPGL++LG ILP+G + LP+ A P + +NL Sbjct: 7 QGDTLDTICARYYGRTEGVVETVLQANPGLSELGVILPNGTEIDLPDVASSPVTK-TINL 65 Query: 9437 WD 9432 W+ Sbjct: 66 WE 67 >ref|NP_878217.1|gpH Length = 669 Score = 74.3 bits (181), Expect = 2e-13 Identities = 40/111 (36%), Positives = 54/111 (48%) Frame = -1 Query: 3748 PDGSETALRHERWRGPLTKIEQHPTNPSWWIAEVAIPDEVGGWYVSEAALYTEDGELYAI 3569 PD +T L HE WR L KI Q N ++ IAE+ IP EVGG+++ E LY + G L A+ Sbjct: 45 PDAGQTGLIHEVWRHALNKISQDKRNSNYIIAELVIPPEVGGFWMRELGLYDDAGTLIAV 104 Query: 3568 AKYPPSLKPLWTSGAGRQIYVRLIFXXXXXXXXXXXXXXXXXXVSRGYVDD 3416 A S KP G+GR R++ ++ YVDD Sbjct: 105 ANMAESYKPTLAEGSGRSQTCRMVIIVSSVASVELTIDTTTVMATQDYVDD 155 >ref|NP_046775.1|gpH Length = 669 Score = 73.6 bits (179), Expect = 4e-13 Identities = 40/111 (36%), Positives = 54/111 (48%) Frame = -1 Query: 3748 PDGSETALRHERWRGPLTKIEQHPTNPSWWIAEVAIPDEVGGWYVSEAALYTEDGELYAI 3569 PD +T L HE WR L KI Q N ++ IAE+ IP EVGG+++ E LY + G L A+ Sbjct: 45 PDAGQTGLIHEVWRHALNKISQDKRNSNYIIAELVIPPEVGGFWMRELGLYDDAGTLIAV 104 Query: 3568 AKYPPSLKPLWTSGAGRQIYVRLIFXXXXXXXXXXXXXXXXXXVSRGYVDD 3416 A S KP G+GR R++ ++ YVDD Sbjct: 105 ANMAESYKPALAEGSGRWQTCRMVIIVSSVASVELTIDTTTVMATQDYVDD 155 >ref|NP_490611.1|hypothetical protein Length = 89 Score = 73.2 bits (178), Expect = 6e-13 Identities = 33/58 (56%), Positives = 40/58 (68%) Frame = -1 Query: 7924 SPAPTLTVTGCPAVVPCRLPATAPSDNGDLLDDTERLEAAWAECAAQVDMLYRHQQTT 7751 SP LT++GCPAV PC L + AP DNG L + ER+ AWAECAA+VDM+ R Q T Sbjct: 27 SPERPLTISGCPAVTPCSLESAAPKDNGGLQTEVERIGLAWAECAAKVDMIIRTQGAT 84 >ref|NP_052267.1|similar to P2 tail fiber protein H, PIR Accession Number B42291 Length = 462 Score = 68.6 bits (166), Expect = 1e-11 Identities = 37/111 (33%), Positives = 54/111 (48%) Frame = -1 Query: 3748 PDGSETALRHERWRGPLTKIEQHPTNPSWWIAEVAIPDEVGGWYVSEAALYTEDGELYAI 3569 PD + L +E WR L KI Q N ++ +AE+ IP EVGG+++ E LY ++G L A+ Sbjct: 45 PDAGQVQLVNEVWRHALNKISQDNRNSNYIVAELVIPPEVGGFWMRELGLYDDEGTLIAV 104 Query: 3568 AKYPPSLKPLWTSGAGRQIYVRLIFXXXXXXXXXXXXXXXXXXVSRGYVDD 3416 A S KP G+GR R++ ++ YVDD Sbjct: 105 ANMAESYKPELAEGSGRAQTCRMVIIVSSIASVELSIDSTMVMATQEYVDD 155 >ref|NP_958074.1|gp19 Length = 675 Score = 67.8 bits (164), Expect = 2e-11 Identities = 37/111 (33%), Positives = 54/111 (48%) Frame = -1 Query: 3748 PDGSETALRHERWRGPLTKIEQHPTNPSWWIAEVAIPDEVGGWYVSEAALYTEDGELYAI 3569 PD +T L +E WR L KI Q ++ +AE+ IP EVGG+++ E LY ++G L A+ Sbjct: 45 PDAGQTQLVNEVWRHTLNKISQDNRYSNYIVAELVIPPEVGGFWMRELGLYDDEGTLIAV 104 Query: 3568 AKYPPSLKPLWTSGAGRQIYVRLIFXXXXXXXXXXXXXXXXXXVSRGYVDD 3416 A S KP G+GR R++ ++ YVDD Sbjct: 105 ANMAESYKPELAEGSGRAQTCRMVIIVSSVESVALSIDSTMVMATQDYVDD 155 >ref|NP_839867.1|gpH Length = 913 Score = 67.4 bits (163), Expect = 3e-11 Identities = 35/111 (31%), Positives = 53/111 (47%) Frame = -1 Query: 3748 PDGSETALRHERWRGPLTKIEQHPTNPSWWIAEVAIPDEVGGWYVSEAALYTEDGELYAI 3569 PD +T L HE WR L K+ N ++ +AE+ +P EVGG+++ E LY + G L A+ Sbjct: 45 PDAGQTKLVHEVWRHALNKVSVDNKNKNYIVAELVVPPEVGGFWMRELGLYDDAGTLIAV 104 Query: 3568 AKYPPSLKPLWTSGAGRQIYVRLIFXXXXXXXXXXXXXXXXXXVSRGYVDD 3416 + S KP G+GR R++ ++ YVDD Sbjct: 105 SNMAESYKPELAEGSGRAQTCRMVIILSNVASVELSIDASTVMATQDYVDD 155 >ref|YP_024723.1|gp50 Length = 383 Score = 67.0 bits (162), Expect = 4e-11 Identities = 58/197 (29%), Positives = 84/197 (42%), Gaps = 15/197 (7%) Frame = -1 Query: 5260 EGDSEFRYRIQLSLEGLSVAGPEGAYIFHALSASGQVLDAXXXXXXXXXXXXXVLSREG- 5084 E D R RI+L+ + S AG AY+FHA SA ++D ++S G Sbjct: 186 ETDDRLRERIRLAPQAFSTAGSRLAYVFHAKSAHQSIVDVGVIGPEMEMRDGRLVSVNGV 245 Query: 5083 ------------DGTASNELLATVGSALTDENVRPLTDFVEVQDAIIVSYQIEA--TLYF 4946 G S +L V LTDE RPLTD+V+V+ V Y I+ TLY Sbjct: 246 QPGSVQVYPLVDTGLPSEAILQLVRDNLTDERRRPLTDYVDVRSPTPVDYAIDVRLTLYK 305 Query: 4945 LSGPDRTVVMXXXXXXXXAYTEGQHRLGLDVTLSGIYAALHQPGVQRVDLASPVANLVVD 4766 +G D T+ T+ LG D+ + A+ GV VDL +A V+ Sbjct: 306 DAGADTTIAQARTAAEAYR-TDRAAGLGRDIVPRQLSRAVQVQGVYDVDLPG-LALRVLT 363 Query: 4765 RQSASYCTAITLTDGGL 4715 + CT +++ G+ Sbjct: 364 ASEWARCTGVSVIPIGV 380 >ref|NP_599081.1|holin Length = 111 Score = 58.2 bits (139), Expect = 2e-08 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 6/106 (5%) Frame = -2 Query: 9405 MPDKPETWA-WLAAWVQSNWPG---IYAGVLAFVIAVFRIAYTGGR--LRQLVLEAPLCG 9244 MP P TW WL + QS W G + A +++ V+A RIAY GG ++ LE LCG Sbjct: 1 MPHNPNTWPDWLELF-QSWWRGDTPLGAVIMSIVMAGLRIAYFGGGGGWKRKTLEILLCG 59 Query: 9243 FIGLGVSYSTELLGVSPSAGAFFGSMVGLIGVETVRATARRLLEKK 9106 + L + + E +G S G VGLIGV+ +R A R++ K Sbjct: 60 ALTLTFASALEYVGWPKSLSVAIGGGVGLIGVDAIRGAAMRVIGNK 105 >ref|NP_490610.1|predicted lysis Length = 153 Score = 58.2 bits (139), Expect = 2e-08 Identities = 47/134 (35%), Positives = 62/134 (46%), Gaps = 8/134 (5%) Frame = -3 Query: 8228 LLAASLIVFSVSLQR-DRAEATAQQAIEQRD----QIIRHANS---LADELAKERTAQAK 8073 LL A ++ V QR D A+A QA R Q+ R A + L L++ER AQA Sbjct: 13 LLGALGLLLWVQQQRIDLAQARLAQAELARKASDAQLSRQAGTITALEAALSRERQAQAD 72 Query: 8072 LRTTQNALRNELARRRTQIEELKHENQELREWXXXXXXXXXXXXXXXXXLTGADAYRDWL 7893 L + LR LA R IE+LK +++ R+W +TGA AY WL Sbjct: 73 LDQQRQQLRQALAIRERLIEDLKRDDEPYRQWADQPLPDVARRLQQRPAITGAAAYHQWL 132 Query: 7892 SGRGAVPPAGDGAE 7851 S R A+ P G E Sbjct: 133 SRRDALQPGVSGTE 146 >ref|NP_958067.1|gp12 Length = 96 Score = 55.5 bits (132), Expect = 1e-07 Identities = 25/49 (51%), Positives = 30/49 (61%) Frame = -1 Query: 7927 PSPAPTLTVTGCPAVVPCRLPATAPSDNGDLLDDTERLEAAWAECAAQV 7781 P+PAP + V+GCP V C +P + P NGDL D RLE A CA QV Sbjct: 26 PAPAPVIVVSGCPRVSLCPMPESDPKTNGDLSADIRRLEGALTACALQV 74 >ref|NP_052260.1|unknown Length = 96 Score = 55.1 bits (131), Expect = 2e-07 Identities = 24/51 (47%), Positives = 30/51 (58%) Frame = -1 Query: 7933 DRPSPAPTLTVTGCPAVVPCRLPATAPSDNGDLLDDTERLEAAWAECAAQV 7781 ++P+P P + V GCP V C +P + P NGDL D RLE A CA QV Sbjct: 24 EQPAPVPVIVVNGCPRVSLCPMPGSDPKTNGDLSADIRRLEGALTACALQV 74 >ref|NP_490619.1|hypothetical protein Length = 762 Score = 53.1 bits (126), Expect = 6e-07 Identities = 89/440 (20%), Positives = 153/440 (34%), Gaps = 9/440 (2%) Frame = -1 Query: 3748 PDGSETALRHERWRGPLTKIEQHPTNPSWWIAEVAIPDEVGGWYVSEAALYTEDGELYAI 3569 P ++T L +R+R L ++ + + +AE+ +P +GG+++ E L DG+ A+ Sbjct: 50 PSAAQTKLIRQRYRAQLNRLFVSEQSANVLVAELVLPMAIGGFWIREIGLEDADGKFVAV 109 Query: 3568 AKYPPSLKPLWTSGAGRQIYVRLIFXXXXXXXXXXXXXXXXXXVSRGYVDDXXXXXXXXX 3389 A PPS K SG+ R +R+ ++ +V Sbjct: 110 ANCPPSFKASVESGSARTQTIRVQIILSGMEHVELIIDDGIVYATQDWVTAKVAADFKGR 169 Query: 3388 XXXXXTGQPGQVPVRA----AEPGSGNXXXXXXXXXXXXXALRKDAGFTAAVGARYYLAD 3221 G G + A A P SG + AG Y + D Sbjct: 170 KVLAGNGLVGGGDLSADRTIALPASGVGAGTYRAVTVNANGI-VTAGSNPTTLGGYGITD 228 Query: 3220 SI----VVTLPQGSGLQAGDSIAFVKSIGAAPLIQAQVGDNIRHGEQIDSAVTFDIQSEI 3053 ++ VT P + L + AA L+ A + N ++ + +T + Sbjct: 229 ALHASEAVTTPTANKL---------LRLNAAGLLPASITGNAATASRLAAPITLSASGDA 279 Query: 3052 IFVWSGTTWEV*MPISLLTQSGQESGWVLGETRRIAAAADLIDVGESGKAVKRDVARAIL 2873 WS +LT + SG G ++ A + G +G ++ Sbjct: 280 --TWSARFDGATNVNGVLTLA--NSGVTAGTYAKVTVNAKGLVTGATG----------LV 325 Query: 2872 ASEYPDFYNLAVDXXXXXXXXXXXXTGLTGVNGINTSGAGVWIATGPAGGISRSTNGGVT 2693 AS+ P A+D G TG NGI + V + + +G T Sbjct: 326 ASDIP-----ALDAGKITSGILPAARGGTG-NGIGQAATAVKLVAPRTIYLGGDVSGSTT 379 Query: 2692 WT-AVTSGVTATLGQPSYGGGKWVIPYATNKVLISADDGASWTDTTVQGSFSFSATGKTA 2516 + + +G+T TL G + K L++ G + D + S ATG+ Sbjct: 380 FDGSANAGITVTLANSGVNAGSYPKVTVNAKGLVTGGGGLTAADIPALDA-SKIATGRLD 438 Query: 2515 YLNGAFVYSDLSTKLYRSTD 2456 V L+T ++ S D Sbjct: 439 LERLPLVSQGLATAVHTSVD 458 >ref|NP_878210.1|LysC Length = 96 Score = 52.8 bits (125), Expect = 8e-07 Identities = 23/53 (43%), Positives = 31/53 (58%) Frame = -1 Query: 7930 RPSPAPTLTVTGCPAVVPCRLPATAPSDNGDLLDDTERLEAAWAECAAQVDML 7772 RP+ P + CP V C++P + P NGDL D +LE A A CA+QV M+ Sbjct: 25 RPAQTPVIVANACPKVSLCQMPGSDPETNGDLSADIRQLENALARCASQVKMI 77 >ref|NP_536651.1|putative terminase, endonuclease subunit Length = 238 Score = 52.8 bits (125), Expect = 8e-07 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 2/134 (1%) Frame = -2 Query: 10782 LQLLQLTTDRARLKQIQSEQGKAELKRE-LLPAYQPYVEGVLSAGQGAQDEVLTTVMVWR 10606 L+L++ D+ LK K KR+ L+P Y+P E L+AG+ Q+ + T ++VW Sbjct: 34 LRLVEFEQDKQVLKGFVQISEKVNHKRDVLIPKYKPLAEKYLAAGESYQNPIFTDLIVWL 93 Query: 10605 MDAGDYTGALDIADYVLRHGLVMPDRFARTTGCLV-AEEIANAALKAQKAGGAFDLAVLE 10429 D GD A++ + L P+ F R++ ++ A+E+ A + G + + Sbjct: 94 FDIGDLETAVEWLFKAIELNLPTPENFKRSSWAVICADEVLKWAEQQLPNGHSIEPYFSR 153 Query: 10428 RTQTLTQEQDMPDE 10387 + + +E +P++ Sbjct: 154 VFEKIDKEWKLPEK 167 >ref|NP_757382.1|LysC Length = 96 Score = 52.0 bits (123), Expect = 1e-06 Identities = 23/52 (44%), Positives = 30/52 (57%) Frame = -1 Query: 7927 PSPAPTLTVTGCPAVVPCRLPATAPSDNGDLLDDTERLEAAWAECAAQVDML 7772 P+P P + CP V C +P + P NGDL D +LE A A CA+QV M+ Sbjct: 26 PAPTPVIVPNACPKVSLCPMPGSDPQTNGDLSADIRQLENALARCASQVKMI 77 >ref|YP_164437.1|lysin Length = 355 Score = 50.1 bits (118), Expect = 5e-06 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 3/64 (4%) Frame = -1 Query: 9085 LRLDDRNLAVLTLQKQLNALG--AGLY-PDGHYGEQTEQAVRDYQRRTGLVVDGIAGPKT 8915 LR +R V +LQ+QL G G Y DG +G+ T AVRD+QR G+ VDG+ GP+T Sbjct: 215 LRHGERGPLVRSLQEQLIDKGFDLGRYGADGVFGDITRNAVRDFQRAAGIAVDGVPGPQT 274 Query: 8914 MAAL 8903 AL Sbjct: 275 FRAL 278 >ref|NP_758936.1|ORF45 Length = 68 Score = 49.7 bits (117), Expect = 7e-06 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Frame = -3 Query: 9614 GDTLDALCWRHYGRTASVVEAVLEANPGLADLGPILPHGQRVTLPE-QAPQPQRQGLVNL 9438 GD +D +C+R YGR+ ++ V E NPGLA+ GP LP G + LPE P+ ++L Sbjct: 8 GDVVDDICYRQYGRSDYALQ-VYELNPGLAEYGPRLPAGLIIQLPEISKPETPELPKISL 66 Query: 9437 WD 9432 +D Sbjct: 67 FD 68 >ref|NP_817703.1|gp25 Length = 317 Score = 49.3 bits (116), Expect = 9e-06 Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 14/84 (16%) Frame = -1 Query: 9112 KEGGTGMTTL-----------RLDDRNLAVLTLQKQLNALGAG---LYPDGHYGEQTEQA 8975 + GGTG T +L D N V +LQ+ LN +G L DG +G TE+ Sbjct: 161 RRGGTGGGTTPAPTPIENIYAQLGDNNDRVRSLQQFLNDNFSGYSKLDVDGDFGPLTEKV 220 Query: 8974 VRDYQRRTGLVVDGIAGPKTMAAL 8903 V ++QRR G+ DGI GP T+A L Sbjct: 221 VAEFQRRVGVAADGIVGPVTLAKL 244 >ref|NP_490602.1|predicted major capsid protein Length = 338 Score = 49.3 bits (116), Expect = 9e-06 Identities = 24/42 (57%), Positives = 30/42 (71%) Frame = -3 Query: 11030 QEGTRRRQVVDNAKRDRIENYESVNDAYVIEDLGGAALAENI 10905 Q G RRR + + +++RIENYES NDAYV+ED G L ENI Sbjct: 293 QIGGRRRYLKEVPEKNRIENYESSNDAYVVEDYGLGCLVENI 334 >ref|NP_536652.1|putative head completion protein Length = 153 Score = 47.4 bits (111), Expect = 3e-05 Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 1/152 (0%) Frame = -1 Query: 10093 FIANGGTVEPFVLDNDGWFPDIDAEHLRAAVRMDGSITNARLEVAAVAAMLSVNRXXXXX 9914 F A+ + + ++NDG++P+I+A + + R+ A V A+ SVN Sbjct: 2 FTASNTSFQDTTIENDGFWPNINAGDFERLRGTPAAQDDERIAHAVVNAIASVNLQLSDL 61 Query: 9913 XXXXXXXXXXXXADVPAVA-IDGESERVHLYRRAVYCSAGAELAERYRSYDATAAGNQRA 9737 ADVPA ++ ++ V Y+ AV+ A A+L + + G+ A Sbjct: 62 KAKYIAAGHASAADVPAFPKVNDKNLIVIQYQSAVFARAKADLLPDFATVSQKKEGDHLA 121 Query: 9736 DDLTPSIDEFRRDARWAIRDLLGVTHTTVELI 9641 + + +E ++ IR++LG +VELI Sbjct: 122 ERSQETKNELLAESERIIRNMLGKNRASVELI 153 >ref|NP_059621.1|inhibitor of gene 13' protein holin Length = 108 Score = 46.2 bits (108), Expect = 7e-05 Identities = 29/103 (28%), Positives = 50/103 (48%) Frame = -2 Query: 9414 MKHMPDKPETWAWLAAWVQSNWPGIYAGVLAFVIAVFRIAYTGGRLRQLVLEAPLCGFIG 9235 MK MP+K + L A + + GI A +LAF +A R Y GG ++ +++A +C I Sbjct: 1 MKKMPEKHDL---LTAMMAAKEQGIGA-ILAFAMAYLRGRYNGGAFKKTLIDATMCAIIA 56 Query: 9234 LGVSYSTELLGVSPSAGAFFGSMVGLIGVETVRATARRLLEKK 9106 + G+S + +G IG +++ + +R KK Sbjct: 57 WFIRDLLVFAGLSSNLAYIASVFIGYIGTDSIGSLIKRFAAKK 99 >ref|NP_943827.1|gp49 Length = 429 Score = 45.8 bits (107), Expect = 9e-05 Identities = 21/35 (60%), Positives = 26/35 (74%) Frame = -1 Query: 9007 DGHYGEQTEQAVRDYQRRTGLVVDGIAGPKTMAAL 8903 DG +G TE AVR++QRR+ L+ DGI GP T AAL Sbjct: 393 DGDFGPLTELAVREFQRRSLLIADGIVGPNTAAAL 427 >ref|NP_958235.1|gene 61 protein Length = 105 Score = 45.4 bits (106), Expect = 1e-04 Identities = 28/96 (29%), Positives = 46/96 (47%) Frame = -2 Query: 9393 PETWAWLAAWVQSNWPGIYAGVLAFVIAVFRIAYTGGRLRQLVLEAPLCGFIGLGVSYST 9214 PE LAA + + GI A +LAF +A R Y GG + V++A +C I + Sbjct: 2 PEKHDLLAAILAAKEQGIGA-ILAFAMAYLRGRYNGGAFTKTVIDATMCAIIAWFIRDLL 60 Query: 9213 ELLGVSPSAGAFFGSMVGLIGVETVRATARRLLEKK 9106 + G+S + +G IG +++ + +R KK Sbjct: 61 DFAGLSSNLAYITSVFIGYIGTDSIGSLIKRFAAKK 96 >ref|NP_958234.1|gene 60 protein Length = 107 Score = 45.4 bits (106), Expect = 1e-04 Identities = 28/96 (29%), Positives = 46/96 (47%) Frame = -2 Query: 9393 PETWAWLAAWVQSNWPGIYAGVLAFVIAVFRIAYTGGRLRQLVLEAPLCGFIGLGVSYST 9214 PE LAA + + GI A +LAF +A R Y GG + V++A +C I + Sbjct: 4 PEKHDLLAAILAAKEQGIGA-ILAFAMAYLRGRYNGGAFTKTVIDATMCAIIAWFIRDLL 62 Query: 9213 ELLGVSPSAGAFFGSMVGLIGVETVRATARRLLEKK 9106 + G+S + +G IG +++ + +R KK Sbjct: 63 DFAGLSSNLAYITSVFIGYIGTDSIGSLIKRFAAKK 98 >ref|NP_052253.1|major capsid protein Length = 355 Score = 45.4 bits (106), Expect = 1e-04 Identities = 20/41 (48%), Positives = 27/41 (65%) Frame = -3 Query: 11021 TRRRQVVDNAKRDRIENYESVNDAYVIEDLGGAALAENIVL 10899 + RR + +N K+DR+ENYES+N YV+E L ENI L Sbjct: 302 SHRRSIDENPKKDRVENYESMNIDYVVEAYAAGCLLENITL 342 >ref|NP_040644.1|cell lysis protein Length = 107 Score = 45.4 bits (106), Expect = 1e-04 Identities = 28/96 (29%), Positives = 46/96 (47%) Frame = -2 Query: 9393 PETWAWLAAWVQSNWPGIYAGVLAFVIAVFRIAYTGGRLRQLVLEAPLCGFIGLGVSYST 9214 PE LAA + + GI A +LAF +A R Y GG + V++A +C I + Sbjct: 4 PEKHDLLAAILAAKEQGIGA-ILAFAMAYLRGRYNGGAFTKTVIDATMCAIIAWFIRDLL 62 Query: 9213 ELLGVSPSAGAFFGSMVGLIGVETVRATARRLLEKK 9106 + G+S + +G IG +++ + +R KK Sbjct: 63 DFAGLSSNLAYITSVFIGYIGTDSIGSLIKRFAAKK 98 >ref|NP_037752.1|holin Length = 106 Score = 45.4 bits (106), Expect = 1e-04 Identities = 31/100 (31%), Positives = 48/100 (48%) Frame = -2 Query: 9405 MPDKPETWAWLAAWVQSNWPGIYAGVLAFVIAVFRIAYTGGRLRQLVLEAPLCGFIGLGV 9226 MP+K A LAA Q GI A +LAF +A R Y GG + V++A +C I + Sbjct: 3 MPEKMTVAAILAAKEQ----GIGA-ILAFAMAYLRGRYNGGAFTKTVIDATMCAIIAWFI 57 Query: 9225 SYSTELLGVSPSAGAFFGSMVGLIGVETVRATARRLLEKK 9106 + G+S + +G IG +++ + +R KK Sbjct: 58 RDLLDFAGLSSNLAYITSVFIGYIGTDSIGSLIKRFAAKK 97 >ref|NP_958060.1|gp5 Length = 355 Score = 45.1 bits (105), Expect = 2e-04 Identities = 20/41 (48%), Positives = 27/41 (65%) Frame = -3 Query: 11021 TRRRQVVDNAKRDRIENYESVNDAYVIEDLGGAALAENIVL 10899 + RR + +N K+DR+ENYES+N YV+E L ENI L Sbjct: 302 SHRRSIDENPKKDRVENYESMNIDYVVEVYAAGCLLENITL 342 >ref|NP_112068.1|holin Length = 107 Score = 45.1 bits (105), Expect = 2e-04 Identities = 29/100 (29%), Positives = 49/100 (49%) Frame = -2 Query: 9405 MPDKPETWAWLAAWVQSNWPGIYAGVLAFVIAVFRIAYTGGRLRQLVLEAPLCGFIGLGV 9226 MP+K + LAA + + GI A +LAF +A R Y GG + V++A +C I + Sbjct: 3 MPEKNDL---LAAILAAKEQGIGA-ILAFAMAYLRGRYNGGAFTKTVIDATMCAIIAWFI 58 Query: 9225 SYSTELLGVSPSAGAFFGSMVGLIGVETVRATARRLLEKK 9106 + G+S + +G IG +++ + +R KK Sbjct: 59 RDLLDFAGLSSNLAYITSVFIGYIGTDSIGSLIKRFAAKK 98 >ref|YP_003961.1|hypothetical protein Length = 86 Score = 45.1 bits (105), Expect = 2e-04 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Frame = -3 Query: 1202 LLIALDQFVNAALGGYVDETLSSRAHREGWVLAERLIDRLFWWDRQ-----GEIHHCELA 1038 +++A+DQ NA +GG DETLSSR +R +LAE+ R W R + +HC+ A Sbjct: 13 VVVAIDQLFNALIGGAADETLSSRTYRRA-ILAEKPKKRWCVWYRVINAVFFDKNHCKKA 71 Query: 1037 FYGELAREHF 1008 + E+ R + Sbjct: 72 YESEINRRQY 81 >ref|NP_046760.1|gpN Length = 357 Score = 43.5 bits (101), Expect = 5e-04 Identities = 19/41 (46%), Positives = 26/41 (63%) Frame = -3 Query: 11027 EGTRRRQVVDNAKRDRIENYESVNDAYVIEDLGGAALAENI 10905 + + RR + +N K DR+ENYES+N YV+ED L E I Sbjct: 300 DDSHRRVIEENPKLDRVENYESMNIDYVVEDYAAGCLVEKI 340 >ref|NP_037695.1|holin Length = 107 Score = 43.5 bits (101), Expect = 5e-04 Identities = 29/100 (29%), Positives = 48/100 (48%) Frame = -2 Query: 9405 MPDKPETWAWLAAWVQSNWPGIYAGVLAFVIAVFRIAYTGGRLRQLVLEAPLCGFIGLGV 9226 MP+K + LAA + + GI A +LAF +A R Y GG + V++A +C I + Sbjct: 3 MPEKNDL---LAAILAAKEQGIGA-ILAFAMAYLRGRYNGGAFTKTVIDATMCAIIAWFI 58 Query: 9225 SYSTELLGVSPSAGAFFGSMVGLIGVETVRATARRLLEKK 9106 G+S + +G IG +++ + +R KK Sbjct: 59 RDLLGFAGLSSNLAYITSVFIGYIGTDSIGSLIKRFAAKK 98 >ref|NP_878202.1|gpN Length = 357 Score = 43.5 bits (101), Expect = 5e-04 Identities = 19/41 (46%), Positives = 26/41 (63%) Frame = -3 Query: 11027 EGTRRRQVVDNAKRDRIENYESVNDAYVIEDLGGAALAENI 10905 + + RR + +N K DR+ENYES+N YV+ED L E I Sbjct: 300 DDSHRRVIEENPKLDRVENYESMNIDYVVEDYAAGCLVEKI 340 >ref|NP_839853.1|gpN Length = 357 Score = 43.5 bits (101), Expect = 5e-04 Identities = 19/41 (46%), Positives = 26/41 (63%) Frame = -3 Query: 11027 EGTRRRQVVDNAKRDRIENYESVNDAYVIEDLGGAALAENI 10905 + + RR + +N K DR+ENYES+N YV+ED L E I Sbjct: 300 DDSHRRVIEENPKLDRVENYESMNIDYVVEDYAAGCLVEKI 340 >ref|YP_063731.1|Hypothetical protein Length = 105 Score = 43.1 bits (100), Expect = 6e-04 Identities = 26/96 (27%), Positives = 45/96 (46%) Frame = -2 Query: 9393 PETWAWLAAWVQSNWPGIYAGVLAFVIAVFRIAYTGGRLRQLVLEAPLCGFIGLGVSYST 9214 PE L A + + GI A +LAF +A R Y GG ++ +++A +C I + Sbjct: 2 PEKHDLLTAMMAAKEQGIGA-ILAFAMAYLRGRYNGGAFKKTLIDATMCAIIAWFIRDLL 60 Query: 9213 ELLGVSPSAGAFFGSMVGLIGVETVRATARRLLEKK 9106 G+S + +G IG +++ + +R KK Sbjct: 61 VFAGLSSNLAYIASVFIGYIGTDSIGSLIKRFAAKK 96 >ref|YP_024425.1|outer capsid protein Length = 460 Score = 42.7 bits (99), Expect = 8e-04 Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 15/161 (9%) Frame = -1 Query: 2746 IATGPAGGISRSTNGGVTWTA----VTSGVTATLGQP--SYGGGKWVIPYATNKVLISAD 2585 IA G RSTNGGV+WT + SG TA+ GG K + + +S D Sbjct: 207 IAGSNIGVAGRSTNGGVSWTKLPDFLNSGATASAINKILHVGGNKLIALLGSGYAAVSND 266 Query: 2584 DGASWTDTTVQGSFSFSATGKTAYLNGAFVYSDLSTKLYRS-------TDGVNWSDVGDT 2426 GA+W+ + S + T++ +GA + + ++ GV WS + Sbjct: 267 LGATWS-ALPRWLNSGGSDNNTSFFDGAVTATGAIIAVGQNGFASISRNGGVTWSAL-PR 324 Query: 2425 ARGGGTYIRSLAVGQGLHVILVDGNLPR--YSSDGGVSWSS 2309 G T +A+G I+V GN S + GV+WS+ Sbjct: 325 YLGMPTNTSIVAIGVSDTAIVVGGNNGNCAISRNDGVTWSA 365 Score = 40.4 bits (93), Expect = 0.004 Identities = 44/184 (23%), Positives = 72/184 (39%), Gaps = 22/184 (11%) Frame = -1 Query: 2794 GLTGVNGINTSGAGVWIATGPAGGISRSTNGGVTWTAVTSGVTATLGQPSYGGGKWVIPY 2615 GL G+N I + G+ V A G G RST+ G+TW+ + +G G G I Sbjct: 144 GLVGLNAIGSDGSLVVGAMGMEG--MRSTDKGLTWSYIGNG----FGTGQTSGTISAICV 197 Query: 2614 ATNKVLI-------------SADDGASWTDTT--VQGSFSFSATGKTAYLNGAFVYSDLS 2480 N V++ S + G SWT + + SA K ++ G + + L Sbjct: 198 VGNVVVVGGIAGSNIGVAGRSTNGGVSWTKLPDFLNSGATASAINKILHVGGNKLIALLG 257 Query: 2479 TKLYRSTD--GVNWSDVGDTARGGG-----TYIRSLAVGQGLHVILVDGNLPRYSSDGGV 2321 + ++ G WS + GG ++ G + + S +GGV Sbjct: 258 SGYAAVSNDLGATWSALPRWLNSGGSDNNTSFFDGAVTATGAIIAVGQNGFASISRNGGV 317 Query: 2320 SWSS 2309 +WS+ Sbjct: 318 TWSA 321 >ref|YP_024722.1|gp49 Length = 117 Score = 42.7 bits (99), Expect = 8e-04 Identities = 25/65 (38%), Positives = 37/65 (56%) Frame = -2 Query: 5931 LEHLRQSIADILGTPIGSRVMRRDYGSLLPELIDQPLNGATVTRLYAAIATALIRWEPRL 5752 ++ + Q+I ILGTP GS R ++GS L +D P++ AT + A+ RWEPR Sbjct: 25 VDDIDQAIRLILGTPQGSDPHRPEFGSKLYLYLDMPIDRAT-PHVVRESVDAIRRWEPRC 83 Query: 5751 RLTRV 5737 + RV Sbjct: 84 EVVRV 88 >ref|YP_053021.1|hypothetical protein Length = 444 Score = 39.7 bits (91), Expect = 0.007 Identities = 48/172 (27%), Positives = 65/172 (37%), Gaps = 26/172 (15%) Frame = -1 Query: 2713 STNGGVTWTAVTSGVTATLGQPSY---------GGGKWVIPYATNKVLISADDGASWTDT 2561 STNGG TW ++ G+ G PS+ G V+ Y S + G SW Sbjct: 160 STNGGATWNSLPQGLGT--GVPSFQATPKGAASDGSTVVVVYDGGYSAKSTNGGVSWVSL 217 Query: 2560 TVQGSFSFSATGK-----TAYLNGAFVYSDLSTKLYRSTD-GVNWSDV--GDTARGGGTY 2405 F FS T A V + S RSTD G WS++ G R GT Sbjct: 218 P---RFFFSGTSAVNINCVAVSGNTIVQAGASGYARRSTDGGSTWSNLPRGLGMRTDGTI 274 Query: 2404 IRSLAVGQGLHVILVDGNLPRYSSD---------GGVSWSSGASRGITDPGG 2276 + G ++V GN + +SD GG +W+ + I P G Sbjct: 275 TKMHGRGN----VIVAGNSEQQNSDPTTLTISTNGGATWT---GKNIGSPDG 319 Score = 34.7 bits (78), Expect = 0.22 Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 18/182 (9%) Frame = -1 Query: 2782 VNGINTSGAGVWIATGPAGGISRSTNGGVTWTAVTSGV-TATLGQPSYGGGKWVIPYATN 2606 +N + SG + + G +G RST+GG TW+ + G+ T G + G+ + A N Sbjct: 230 INCVAVSGNTI-VQAGASGYARRSTDGGSTWSNLPRGLGMRTDGTITKMHGRGNVIVAGN 288 Query: 2605 K---------VLISADDGASWTDTTV---QGSFSFSATGKTAYLNGAFVYS-DLSTKLYR 2465 + IS + GA+WT + G S AT + VY L T + R Sbjct: 289 SEQQNSDPTTLTISTNGGATWTGKNIGSPDGLGSRMATMCHVVDSSVIVYGMQLHTAISR 348 Query: 2464 STDGV-NWSDVGDTARGGGTYIRSL---AVGQGLHVILVDGNLPRYSSDGGVSWSSGASR 2297 + W G + G + L +VG + +G+ S + G+SWS+ ++ Sbjct: 349 NGGSTWTWLPSGLNSGSGSSNTTMLCMDSVGDTIVAGTYNGS-AAVSYNKGLSWSAVPTK 407 Query: 2296 GI 2291 G+ Sbjct: 408 GL 409 >ref|NP_536825.1|packaging protein Length = 150 Score = 39.3 bits (90), Expect = 0.009 Identities = 34/140 (24%), Positives = 55/140 (39%) Frame = -1 Query: 10060 VLDNDGWFPDIDAEHLRAAVRMDGSITNARLEVAAVAAMLSVNRXXXXXXXXXXXXXXXX 9881 V+ N+G++ DI E + + I ++ A +AAM VN Sbjct: 13 VITNNGFWSDIYVEEFQKQRAIPLQIPVEMVKTALIAAMQGVNLDLAEVEENHRKSAVNS 72 Query: 9880 XADVPAVAIDGESERVHLYRRAVYCSAGAELAERYRSYDATAAGNQRADDLTPSIDEFRR 9701 ++ I+GE+ LY++AV+ A AEL + + R D Sbjct: 73 VQEISTQRINGENYAETLYKKAVFARAKAELLPEFNTLSGREIHQNR--DYVVEQKSLLA 130 Query: 9700 DARWAIRDLLGVTHTTVELI 9641 +A AIR L G +V L+ Sbjct: 131 EATHAIRTLKGKKRGSVWLL 150 >ref|YP_024721.1|gp48 Length = 200 Score = 38.9 bits (89), Expect = 0.012 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 1/103 (0%) Frame = -3 Query: 6464 IRLGTVAEVDPDVARCRVQXXXXXXXXXXXLA-ERAGFDRTWNPPSTGEQCLLLSPSGDP 6288 I+ GTV+ P AR R+ +A + D+ GEQ +L S Sbjct: 12 IKFGTVSASKPGFARVRLTDLGNMRTMWLPIAYPKTLADQACWTYDNGEQVAVLLDSRCE 71 Query: 6287 ATGIVLLGLYSTASPAPDDSLTRHRRTYRDGAVIEYDTESHTL 6159 G++L +YS A P + ++DGAV+EYD +HTL Sbjct: 72 -DGVILGAIYSDADRPPVTDPNKFIVRFKDGAVLEYDRATHTL 113 >ref|NP_899586.1|gp25 Length = 139 Score = 38.5 bits (88), Expect = 0.015 Identities = 17/70 (24%), Positives = 40/70 (57%) Frame = -2 Query: 5934 DLEHLRQSIADILGTPIGSRVMRRDYGSLLPELIDQPLNGATVTRLYAAIATALIRWEPR 5755 DL+ +++SI I+ T G R ++G + + + ++ A+ + +I A+ +WEPR Sbjct: 37 DLKAIQESIIGIVSTKKGERPFNPEFGCDISNQLFENISPASAFAIKYSIENAISKWEPR 96 Query: 5754 LRLTRVQLSP 5725 + + ++++ P Sbjct: 97 VVIQKIEVLP 106 >ref|NP_803710.1|ORF144 Length = 260 Score = 37.0 bits (84), Expect = 0.044 Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Frame = -1 Query: 9094 MTTLRLDDRNLAVLTLQKQLNALGAGL-YPDGHYGEQTEQAVRDYQRRTGLVVDGIAGPK 8918 M LR DR V LQ LN G + PDG +G T V +Q+ L DGI G Sbjct: 1 MKVLRKGDRGDEVCQLQTLLNLCGYDVGKPDGIFGNNTFNQVVKFQKDNCLDSDGIVGKN 60 Query: 8917 TMAAL 8903 T A L Sbjct: 61 TWAEL 65 >ref|NP_700424.1|lysis protein (holin) Length = 103 Score = 35.8 bits (81), Expect = 0.098 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%) Frame = -2 Query: 9393 PETW-AWLAAWVQSNWPG---IYAGVLAFVIAVFRIAYTGGRLRQLVLEAPLCGFIGL 9232 P +W +W+ + QS W G I V+A V+A FR+ Y G ++ + E LCG + L Sbjct: 7 PHSWDSWIELF-QSWWRGDVPIGGVVMAIVVAFFRMVYNGSSWKETLFEGLLCGSLTL 63 >ref|NP_932533.1|baseplate wedge subunit Length = 127 Score = 35.4 bits (80), Expect = 0.13 Identities = 18/57 (31%), Positives = 31/57 (54%) Frame = -2 Query: 5922 LRQSIADILGTPIGSRVMRRDYGSLLPELIDQPLNGATVTRLYAAIATALIRWEPRL 5752 ++ SI I+ TPIGSR +G LP+ + + + + + I TA+ +EPR+ Sbjct: 31 VKNSIIGIVSTPIGSRAFNPYFGCDLPDQLFENITPLVIDTVERNIKTAIRNFEPRV 87 >ref|NP_043489.1|orf20 Length = 150 Score = 34.3 bits (77), Expect = 0.29 Identities = 32/140 (22%), Positives = 55/140 (39%) Frame = -1 Query: 10060 VLDNDGWFPDIDAEHLRAAVRMDGSITNARLEVAAVAAMLSVNRXXXXXXXXXXXXXXXX 9881 V+ N+G++ DI E + + I ++ A VAA+ V+ Sbjct: 13 VITNNGFWSDIYVEEFQKQRAIPLQIPVEMVKAALVAAIQGVDLDLADVAESYRKSAVNS 72 Query: 9880 XADVPAVAIDGESERVHLYRRAVYCSAGAELAERYRSYDATAAGNQRADDLTPSIDEFRR 9701 ++ + I+ E+ LY++AV+ A AEL + + R D Sbjct: 73 VTEISSPLINDENYAETLYKKAVFARAKAELLPEFNTLSGREIHQNR--DYVTEQKSLLA 130 Query: 9700 DARWAIRDLLGVTHTTVELI 9641 +A AIR L G +V L+ Sbjct: 131 EATHAIRTLKGKKRGSVWLL 150 >ref|NP_542288.1|unknown Length = 122 Score = 33.9 bits (76), Expect = 0.37 Identities = 34/120 (28%), Positives = 47/120 (39%), Gaps = 12/120 (10%) Frame = -2 Query: 3876 PAWPWRV--PAMATNSRYDWPKW-PSATAWMPPLSRMAPSITPNTIPMAVKPPCAMSAGG 3706 PA P+ P+ + SRY WP+ PS SR +P K P A + G Sbjct: 8 PAVPYSTTEPSSSIASRYSWPELRPSLRTRSIAASRSGMLRLSEGVPADRKRPSAPATVG 67 Query: 3705 GR*PRSSNTPQTRAGGSPRWPSPTRSAAGTSP---------RPRCIPRMASCTPSPNIRP 3553 S RAG PSP S G+ P R RC+ ++S + +P+ P Sbjct: 68 ------SGLLFWRAGSGAVAPSPVTSTVGSLPFGFGRSASTRRRCLEAVSSSSVAPDHGP 121 >ref|NP_891745.1|baseplate wedge subunit Length = 128 Score = 33.9 bits (76), Expect = 0.37 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 1/99 (1%) Frame = -2 Query: 5931 LEHLRQSIADILGTPIGSRVMRRDYGSLLPELIDQPLNGATVTRLYAAIATALIRWEPRL 5752 ++ ++ SI I+ T GSR +G L + + + +N TV L I A+ +EPR+ Sbjct: 29 IKAVKDSILLIVTTRKGSRPFDPLFGCDLNKSLFENMNPLTVDTLSKNINEAIRNYEPRV 88 Query: 5751 RLTRVQLSPGSTSGSAAIDLTGTHVDDNAPL-SLRVPLS 5638 R V+++P S + + + +D+ L LR+ L+ Sbjct: 89 RNLTVEVTPQYDDNSIIVSIYFSVIDNPDDLEQLRIRLA 127 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,174,959 Number of Sequences: 14420 Number of extensions: 873862 Number of successful extensions: 4027 Number of sequences better than 0.5: 117 Number of HSP's better than 0.5 without gapping: 2714 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3937 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 5322659370 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig34 (17,428 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_612899.1|hypothetical protein 38 0.031 ref|NP_859265.1|hypothetical protein 38 0.040 ref|NP_859099.1|hypothetical protein 38 0.040 ref|NP_944240.1|conserved phage protein 38 0.040 ref|NP_050557.1|hypothetical protein 38 0.040 ref|NP_049519.1|putative tail fiber protein 38 0.040 ref|NP_958267.1|hypothetical protein 36 0.15 ref|NP_817912.1|gp61 34 0.44 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 38.1 bits (87), Expect = 0.031 Identities = 47/160 (29%), Positives = 57/160 (35%), Gaps = 17/160 (10%) Frame = -1 Query: 7939 PAFPQPRRRGTGGRAQDAQAGNRGVP-EQSALARQRAP-----TGEHLPLDHRDGLGPRG 7778 PA P+ R G + AG RG EQ Q P TGE P + +GP+G Sbjct: 272 PAGPKGERGDVGAQGAVGPAGPRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKG 331 Query: 7777 AHRRPAAGTAQPCPGERAGQQLGTGP--ASVDRSGPGPRSVE-PAGHR--------RAGL 7631 P P G+ GP A +R GPR PAG R + + Sbjct: 332 EKGDPGGPAGPQGPKGERGEAGPQGPMGARGERGDTGPRGEPGPAGPRGERGETGPQGPM 391 Query: 7630 RAGDDRERTQAHRRTPSRCGPAARLGTQHPDAQDQGTRHE 7511 A +R T R P GP G P QG R E Sbjct: 392 GARGERGET-GPRGEPGPAGPRGERGETGP----QGPRGE 426 >ref|NP_859265.1|hypothetical protein Length = 645 Score = 37.7 bits (86), Expect = 0.040 Identities = 41/136 (30%), Positives = 49/136 (36%), Gaps = 8/136 (5%) Frame = -1 Query: 7939 PAFPQPRRRGTGGRAQDAQAGNRGVP-EQSALARQRAP-----TGEHLPLDHRDGLGPRG 7778 PA P+ R G + AG RG EQ Q P TGE P + +GP+G Sbjct: 272 PAGPKGERGDVGAQGAVGPAGPRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKG 331 Query: 7777 AHRRPAAGTAQPCPGERAGQQLGTGP--ASVDRSGPGPRSVEPAGHRRAGLRAGDDRERT 7604 P P G+ GP A +R GPR EP AG R Sbjct: 332 EKGDPGGPAGPQGPKGERGEAGPQGPMGARGERGETGPRG-EPG---PAGPRGERGETGP 387 Query: 7603 QAHRRTPSRCGPAARL 7556 Q R P G AA + Sbjct: 388 QGPRGEPGPAGSAANV 403 >ref|NP_859099.1|hypothetical protein Length = 645 Score = 37.7 bits (86), Expect = 0.040 Identities = 41/136 (30%), Positives = 49/136 (36%), Gaps = 8/136 (5%) Frame = -1 Query: 7939 PAFPQPRRRGTGGRAQDAQAGNRGVP-EQSALARQRAP-----TGEHLPLDHRDGLGPRG 7778 PA P+ R G + AG RG EQ Q P TGE P + +GP+G Sbjct: 272 PAGPKGERGDVGAQGAVGPAGPRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKG 331 Query: 7777 AHRRPAAGTAQPCPGERAGQQLGTGP--ASVDRSGPGPRSVEPAGHRRAGLRAGDDRERT 7604 P P G+ GP A +R GPR EP AG R Sbjct: 332 EKGDPGGPAGPQGPKGERGEAGPQGPMGARGERGETGPRG-EPG---PAGPRGERGETGP 387 Query: 7603 QAHRRTPSRCGPAARL 7556 Q R P G AA + Sbjct: 388 QGPRGEPGPAGSAANV 403 >ref|NP_944240.1|conserved phage protein Length = 303 Score = 37.7 bits (86), Expect = 0.040 Identities = 20/47 (42%), Positives = 23/47 (48%) Frame = -2 Query: 9567 PRDQEPARRHPRRGPVAGPRTAGRGPEGLHQRHHRRGRSPAQSGGSH 9427 PR E R + RR P G R A G EG HHR G+ A+ G H Sbjct: 245 PRVFELCRDYKRRAPTRGGRRAQEGGEGRAADHHRGGKDRARGGLQH 291 >ref|NP_050557.1|hypothetical protein Length = 645 Score = 37.7 bits (86), Expect = 0.040 Identities = 41/136 (30%), Positives = 49/136 (36%), Gaps = 8/136 (5%) Frame = -1 Query: 7939 PAFPQPRRRGTGGRAQDAQAGNRGVP-EQSALARQRAP-----TGEHLPLDHRDGLGPRG 7778 PA P+ R G + AG RG EQ Q P TGE P + +GP+G Sbjct: 272 PAGPKGERGDVGAQGAVGPAGPRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKG 331 Query: 7777 AHRRPAAGTAQPCPGERAGQQLGTGP--ASVDRSGPGPRSVEPAGHRRAGLRAGDDRERT 7604 P P G+ GP A +R GPR EP AG R Sbjct: 332 EKGDPGGPAGPQGPKGERGEAGPQGPMGARGERGETGPRG-EPG---PAGPRGERGETGP 387 Query: 7603 QAHRRTPSRCGPAARL 7556 Q R P G AA + Sbjct: 388 QGPRGEPGPAGSAANV 403 >ref|NP_049519.1|putative tail fiber protein Length = 645 Score = 37.7 bits (86), Expect = 0.040 Identities = 41/136 (30%), Positives = 49/136 (36%), Gaps = 8/136 (5%) Frame = -1 Query: 7939 PAFPQPRRRGTGGRAQDAQAGNRGVP-EQSALARQRAP-----TGEHLPLDHRDGLGPRG 7778 PA P+ R G + AG RG EQ Q P TGE P + +GP+G Sbjct: 272 PAGPKGERGDVGAQGAVGPAGPRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKG 331 Query: 7777 AHRRPAAGTAQPCPGERAGQQLGTGP--ASVDRSGPGPRSVEPAGHRRAGLRAGDDRERT 7604 P P G+ GP A +R GPR EP AG R Sbjct: 332 EKGDPGGPAGPQGPKGERGEAGPQGPMGARGERGETGPRG-EPG---PAGPRGERGETGP 387 Query: 7603 QAHRRTPSRCGPAARL 7556 Q R P G AA + Sbjct: 388 QGPRGEPGPAGSAANV 403 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 35.8 bits (81), Expect = 0.15 Identities = 42/153 (27%), Positives = 54/153 (35%), Gaps = 29/153 (18%) Frame = -2 Query: 4236 CSPGAHRPPR-SPV--DRGPQPGRTSFHARTRVPASHRH--PRPGQSRLHAPTS---VAP 4081 C+P A P +P R P+ R + H RTR P + P +R+ P Sbjct: 102 CAPAAPAAPEYAPALRPRAPECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTR 161 Query: 4080 MEAEPPPSVRHRPRM---------------------LPSAELWQERRRTG*PRHNPASAN 3964 P P R +PR+ P + RR P H A Sbjct: 162 RRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRP 221 Query: 3963 IRRAAPRHRHCATLRACPHSRRRRAWQPQ*TDL 3865 RR RHR A+LR P RR R+ P T L Sbjct: 222 RRRTGRRHRRRASLR--PRHRRHRSTPPMNTPL 252 >ref|NP_817912.1|gp61 Length = 836 Score = 34.3 bits (77), Expect = 0.44 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 4/136 (2%) Frame = -3 Query: 9335 GRIVLVRDYDPSIPELMIDREQMIQAVLNIVRNAMQALTGQSDLRLGRIHLRTRTLRQ-- 9162 GR L+ D+ ++PE + D IQA+++ V +QA TG + L L + Sbjct: 318 GRNKLILDWIANLPEQLQDLLGRIQALIDSV---VQAFTGANSL--------GNKLEEFL 366 Query: 9161 FTIGHVRHRLVCRVEIIDNGPGIPAELQETMFYPMVSG--RPDGTGLGLAITQNIISQHQ 8988 F + ++R + V GPG E E + +VSG DG G GLA + ++ + Sbjct: 367 FALSNIRPENIVGV----LGPGTIGEAIEKLVDQLVSGIVGEDGEGAGLADLRELVEK-- 420 Query: 8987 GLIECESHSGHTRFSI 8940 I +S G F++ Sbjct: 421 --ISSQSWLGKAAFAL 434 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,119,030 Number of Sequences: 14420 Number of extensions: 1802039 Number of successful extensions: 6768 Number of sequences better than 0.5: 8 Number of HSP's better than 0.5 without gapping: 4116 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6742 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 8250334019 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig35 (22,460 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_047360.1|ORF348; homologous to eryA gene product in L07626 337 4e-92 ref|YP_164695.1|transposase 158 3e-38 ref|NP_835645.1|putative transposase 100 5e-21 ref|YP_164321.1|hypothetical protein 36 0.19 >ref|NP_047360.1|ORF348; homologous to eryA gene product in L07626 Length = 348 Score = 337 bits (863), Expect = 4e-92 Identities = 169/325 (52%), Positives = 229/325 (70%), Gaps = 5/325 (1%) Frame = +1 Query: 10834 WRHDPETAWLADAPVHPLQQALKDLERAYANFFAQR--ADFPRFKKKGR-RDSFRYPDPK 11004 W+ PE +L DA LQQ LKDL A+ F ++ A P +K+K RDS R+ + + Sbjct: 2 WKKMPEYIFLQDAYTDNLQQKLKDLHTAWKRCFDKKLAAKAPVWKRKNEGRDSIRFVNFE 61 Query: 11005 QIKLNQENSRLFLPK-LGWLRYRNSRNVSGMVKNVTVSQCCGKWFVSIQTERKMAQPIPK 11181 + EN R+ LP LGW+++R S+ V+G +KN T+SQ G+W++S Q E + A+P Sbjct: 62 KYCC-LENRRVKLPSGLGWVKFRQSQRVNGKIKNATISQLAGQWYISFQVEIETAEPNHT 120 Query: 11182 GGA-VGIDMGVSRFATLSDGTFYAPLNSFKQHEKRLRKAQRAMSRKQKFSNNWKKAKARV 11358 VG+D GV++ ATLSDGT + P+NSF++++K+L + QR +SRK KFSNNW+K K ++ Sbjct: 121 STTIVGLDAGVAKLATLSDGTVFEPVNSFQKNQKKLARLQRQLSRKVKFSNNWQKQKRKI 180 Query: 11359 QRIHSRIGHARRDYLHKISTTISQNHAMVCIEDLPVRNLSRSAAGTTEVPGRNVRAKSDL 11538 Q +HSRI + RRDYLHK++TT+S+NHAM+ IEDL V N+S+SAAGT PGRNVRAKS L Sbjct: 181 QCLHSRIANIRRDYLHKVTTTVSKNHAMIVIEDLKVSNMSKSAAGTVSQPGRNVRAKSGL 240 Query: 11539 NKSILDQGWFEFRRQLDYKLAWNGGWLVAVPPQNTSRTCPCCGHVSADNRQSQARFECVE 11718 N+SILDQGW+E RRQL+YK W GG ++AVPP TS+ C CCGH + +NR SQ++F C Sbjct: 241 NRSILDQGWYEMRRQLEYKQLWRGGQVLAVPPAYTSQRCACCGHTAKENRLSQSQFRCQV 300 Query: 11719 CGFEENADVVGAINVSRAGHARFAC 11793 CG+ NADV GA N+ AGHA AC Sbjct: 301 CGYTANADVNGARNILAAGHAVLAC 325 >ref|YP_164695.1|transposase Length = 387 Score = 158 bits (399), Expect = 3e-38 Identities = 116/403 (28%), Positives = 193/403 (47%), Gaps = 31/403 (7%) Frame = +1 Query: 10660 LQAFKFEVMPTGEQQRQMRRFAGSCRFVFNKALAWQKERYEQGES-----RLGYAGLCKR 10824 ++ K + P+ QQ Q+ + G+ RFV+N+ LA K RY+ S G L K+ Sbjct: 2 IKGVKIRLYPSKHQQNQLLQMFGNDRFVWNQMLAMAKARYKNNPSSKFVNEYGMNYLLKQ 61 Query: 10825 LTEWRHDPETAWLADAPVHPLQQALKDLERAYANFFAQRADFPRFKKKGRRDSFRYPDPK 11004 L + E ++L ++ LQ + +L +A+ F + +PRFK + Y Sbjct: 62 LKQ-----EYSFLKESDSSSLQVSNHNLAQAFKTLFKHQGGYPRFKSRHSAKQ-SYTGKS 115 Query: 11005 QIKLNQENSRLFLPKLGWLRYRNSRNVSGM-VKNVT-VSQCCGKWFVSIQTERKMAQPIP 11178 K+ + R+ LPKLG +R + ++G +K T + + G++++S+ E +P+ Sbjct: 116 TCKIVAKR-RVKLPKLGSIRTSKTNILNGCKIKRYTLILEPTGRYYLSLTVEDNSIKPLE 174 Query: 11179 KGGAV-GIDMGVSRFATLSDGTFYAPLNSFKQH--EKRLRKAQRAMSRKQKFS------- 11328 K GAV G+D+GV+ A SDG Y SFK +K++R Q S+++ + Sbjct: 175 KTGAVVGVDLGVADLAITSDGKKY---ESFKPTYLDKQVRSWQSKFSKRKYIATTEVRQW 231 Query: 11329 --------------NNWKKAKARVQRIHSRIGHARRDYLHKISTTISQNHAMVCIEDLPV 11466 +NW++AK ++I + R+DYLHKI+T + + + ++ +EDL Sbjct: 232 NHNHNDYKMLVEDYHNWQRAKRIKACYQAKIANKRKDYLHKITTELVEKYDVIAMEDLRT 291 Query: 11467 RNLSRSAAGTTEVPGRNVRAKSDLNKSILDQGWFEFRRQLDYKLAWNGGWLVAVPPQNTS 11646 +NL ++ L KSI +Q W EFR L+YK W G L+ V P TS Sbjct: 292 KNLLKN---------------HHLAKSISNQSWREFRTILEYKCKWYGKQLIVVKPNYTS 336 Query: 11647 RTCPCCGHVSADNRQSQARFECVECGFEENADVVGAINVSRAG 11775 + C CG+ S + C +CG + DV A+N+ G Sbjct: 337 QICSSCGYHSGKKPLEIREWTCYKCGTHHDRDVNAAVNILNKG 379 >ref|NP_835645.1|putative transposase Length = 246 Score = 100 bits (250), Expect = 5e-21 Identities = 62/217 (28%), Positives = 105/217 (48%) Frame = +1 Query: 11125 GKWFVSIQTERKMAQPIPKGGAVGIDMGVSRFATLSDGTFYAPLNSFKQHEKRLRKAQRA 11304 G +++ I + P + G +G+D+G++ ATLSDGT ++ + ++ R + +R+ Sbjct: 8 GDYYIGIHINVETPPPEDEHGWIGVDLGIASIATLSDGTVFSG-DQIERVRARYERTRRS 66 Query: 11305 MSRKQKFSNNWKKAKARVQRIHSRIGHARRDYLHKISTTISQNHAMVCIEDLPVRNLSRS 11484 + RK +R+ R+ R + I+ TIS+ I D + Sbjct: 67 LQRK---------GTRGAKRVLKRLSGRERRFQQAINHTISRR-----IVDRAIAEGKGV 112 Query: 11485 AAGTTEVPGRNVRAKSDLNKSILDQGWFEFRRQLDYKLAWNGGWLVAVPPQNTSRTCPCC 11664 ++VR + + I +++ R ++ YK A G + P+ TS+ CP C Sbjct: 113 RLEDLSGIRKSVRVRKSQRRRIHRWAFYDLRIKIAYKCALAGVPFELIDPRYTSQRCPVC 172 Query: 11665 GHVSADNRQSQARFECVECGFEENADVVGAINVSRAG 11775 GH NR+SQ++F C CG E NADVVGAIN++ G Sbjct: 173 GHTERANRKSQSKFVCRSCGLEANADVVGAINIALGG 209 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 35.8 bits (81), Expect = 0.19 Identities = 71/253 (28%), Positives = 91/253 (35%), Gaps = 11/253 (4%) Frame = +1 Query: 12088 IDEPSGHPGVRRAPGLHPAQPRHRSGPGQDSGGPLRRRFFDHRPAPGFRLAQTVARQAPG 12267 + + G PG G QP R G +G RR + R G A G Sbjct: 366 LQDRRGGPG-----GAGADQPAARRGVQGQAG----RRTVERRGLQG--------ADAGG 408 Query: 12268 VQGRSCPGKHVDRLPRRRGAVPASGAL*QPSPQSSAGIAGGDFPRGG-CRCARQPRLR-- 12438 ++ R + V RLPRRR V + + + G G +GG RCA PRLR Sbjct: 409 IRARRDDQEPVRRLPRRRAGVCRADRRREGQVRRLRGPRQGRVGQGGRARCA-GPRLRFD 467 Query: 12439 -AGNARPRRLSPVARARSGIEHARRGEPAL----RRSGH-AGHVYPHRFALRENRPLAGH 12600 +G R RA A +G L R GH AG P R A++ G Sbjct: 468 HSGVGEQGRCQGQGRADQDGGGAHQGVEVLGGRGRLQGHPAGQ--PERGAVQH----VGV 521 Query: 12601 PGRPRSLA--GETSQGDAXXXXXXXXXXXXTGGGMLPVAGLLLSRIQAEHGAGSPRVAAE 12774 PG RSLA G+ +G + A + R AE R A Sbjct: 522 PGPGRSLARSGQRQRGRRRNAISLCRHEQPDQHRLRRNADQRVHREDAER-----RTAGA 576 Query: 12775 DAGGKGQGVDAAH 12813 D G G+G A H Sbjct: 577 DRSGGGEGPGAVH 589 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,119,090 Number of Sequences: 14420 Number of extensions: 2173996 Number of successful extensions: 8106 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 4593 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8088 length of database: 3,019,461 effective HSP length: 111 effective length of database: 1,418,841 effective search space used: 10463952375 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig36 (26,214 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 76 2e-13 ref|NP_817395.1|gp57 45 5e-04 ref|NP_862860.1|gp21 44 8e-04 ref|YP_025058.1|DnaC 42 0.003 ref|NP_061611.1|orf 21 42 0.004 ref|NP_038305.1|ORF5 40 0.009 ref|NP_075485.1|hypothetical protein 40 0.012 ref|NP_803371.1|dnaC 40 0.012 ref|NP_958645.1|77ORF013 37 0.10 ref|NP_839903.1|putative DnaC protein 35 0.29 ref|NP_076710.1|DnaC 35 0.29 ref|NP_944257.1|putative DnaC 35 0.38 ref|NP_543070.1|putative replication protein DnaC 35 0.38 ref|NP_510917.1|similar to Escherichia coli DnaC 35 0.50 >ref|NP_046572.1|ABC transporter Length = 705 Score = 75.9 bits (185), Expect = 2e-13 Identities = 57/192 (29%), Positives = 101/192 (52%), Gaps = 5/192 (2%) Frame = +2 Query: 21326 GAQGAVQALRGIDLAVRRGEIFGIIGRSGAGKSSLLRTINRLEQPSEGQVLIDGEDIGSY 21505 GA + I+L + R + IIG SG GKS+ +++++L + + + ++G DI Y Sbjct: 491 GADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRY 550 Query: 21506 DSERLVALRRRIGMIFQHFNLLSAKTVGENVELPLRVAGVPRERRQRKVEEVLRLVGLES 21685 D +++R+RI I ++ L T+ EN+ + + + + + Sbjct: 551 DH---LSIRKRIVYIDENPFLFKG-TIKENLCMG-EIFDQNEIENACIMSQCHEFICNLD 605 Query: 21686 KRDAYP-----AQLSGGQKQRVGIARALVHDPQILLCDEATSALDPETTQSILALLREIN 21850 K+ +Y + LS GQKQR+ +ARA++H PQ+L+ DE+ S +DP+ T+ L+ E Sbjct: 606 KQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTK----LIYETL 661 Query: 21851 RRLRLTIVLITH 21886 R+ I+LITH Sbjct: 662 HRMDCLIILITH 673 >ref|NP_817395.1|gp57 Length = 287 Score = 44.7 bits (104), Expect = 5e-04 Identities = 35/112 (31%), Positives = 46/112 (41%) Frame = +3 Query: 21882 PTKWR*SARSATAWRCWSTANWWNRGRSGRCSARPAIRPPARCWRRCSRNCPRTCWGSCR 22061 P W +A SA WS A W G + R +A A A W W + Sbjct: 139 PFAWS-AAWSAAGSAAWSAA-WSAAGSAARSAAGSAAGSAA--WSAAGSAAWSAAWSAAE 194 Query: 22062 TAAGSRTTACCWSCATPGRATASRTWPGSARTSAAG*PCCRAASNASRDAPW 22217 +AAGS + WS A +A+ + GSA SAA AA +A+ A W Sbjct: 195 SAAGSAAWSAAWSAAGSAAWSAAWSAAGSAAGSAAESAARSAAGSAAESAAW 246 Score = 37.4 bits (85), Expect = 0.077 Identities = 26/75 (34%), Positives = 35/75 (46%) Frame = +3 Query: 21987 AIRPPARCWRRCSRNCPRTCWGSCRTAAGSRTTACCWSCATPGRATASRTWPGSARTSAA 22166 AIR A RR + W + +AAGS + WS A +A+ + GSA SAA Sbjct: 122 AIREIADLHRRAAAGEVPFAWSAAWSAAGSAAWSAAWSAAGSAARSAAGSAAGSAAWSAA 181 Query: 22167 G*PCCRAASNASRDA 22211 G AA +A+ A Sbjct: 182 GSAAWSAAWSAAESA 196 >ref|NP_862860.1|gp21 Length = 256 Score = 43.9 bits (102), Expect = 8e-04 Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 10/168 (5%) Frame = -3 Query: 25798 ELAGLAFVERT---------ENIVLIGPSGVGKTHLAIA-LGYRAAQSGLKTRFITAADL 25649 E LAFV+R NIV G +G GK+HLA A + Y + + FI DL Sbjct: 99 EAEKLAFVKRICREWSEGARNNIVFQGEAGTGKSHLAFAMMKYLSETTKEIAIFINVTDL 158 Query: 25648 MLQLGAAQRQGRLKTYLNRAILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMIL 25469 ++++ A Q + +L I + + LV+D++G ++ + ++ KR + ++ Sbjct: 159 LMKIKADFSQ---EEFLVNKIASAKFLVLDDLGMEKDSEWSFSILYNILNKR---ANTVI 212 Query: 25468 TSNLPFSQWAEAFSGDATLTAAMLDRLLHHAHILTLTGESYRLKDKRK 25325 T+NL + + + G ++ M + + ++H++ LK+KRK Sbjct: 213 TTNLTAQEIQKRY-GRPFMSRLM--KGVDNSHLMVFND----LKNKRK 253 >ref|YP_025058.1|DnaC Length = 260 Score = 42.0 bits (97), Expect = 0.003 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 18/125 (14%) Frame = -3 Query: 25765 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLM----LQLGAAQRQGRLKTYL 25598 EN++L GP G GKT LA+A+ G FI+ A+L LQ A + RL + Sbjct: 102 ENVILFGPRGAGKTSLALAMLTSLRDEGQSGLFISTAELSNLMGLQYDAPDVRLRL-VGI 160 Query: 25597 NRAILAPRLLVIDEIG--------YLPFGREEANLFFQVVAKRYE------KGSMILTSN 25460 RA+ +L++D+ G P R+ L ++V R + + S I+T+N Sbjct: 161 ERAMKEAGVLLLDDFGTEGGMKLDIKPVRRDMQELIYRVANARLDFESNRPRLSTIITTN 220 Query: 25459 LPFSQ 25445 S+ Sbjct: 221 NEMSE 225 >ref|NP_061611.1|orf 21 Length = 257 Score = 41.6 bits (96), Expect = 0.004 Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 2/146 (1%) Frame = -3 Query: 25765 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKT--YLNR 25592 ++++L G G GK+HLA A+ G F+ LM ++ AA + ++T L R Sbjct: 117 KSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIQMLMDRIKAAYNKNAVETTDELVR 176 Query: 25591 AILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTSNLPFSQWAEAFSGDATL 25412 + LLV+D++G + N F +V R K + I T+N + + + Sbjct: 177 LLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTNFSDKELNQNMNWQ--- 231 Query: 25411 TAAMLDRLLHHAHILTLTGESYRLKD 25334 + R+ H+A + + G+ +R +D Sbjct: 232 --RINSRMKHNARKVRVIGDDFRERD 255 >ref|NP_038305.1|ORF5 Length = 260 Score = 40.4 bits (93), Expect = 0.009 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 4/106 (3%) Frame = -3 Query: 25762 NIVLIGPSGVGKTHLAI----ALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKTYLN 25595 NIVLIG +GVGK+HLA AL + G+ FI DL+ ++ + L+ Sbjct: 121 NIVLIGNTGVGKSHLAYSALKALSDHTKKMGV---FINVVDLLAKI---KEDFNLEAEYI 174 Query: 25594 RAILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTSNL 25457 R I LV+D++G + + + ++ KR + I+T+NL Sbjct: 175 RRISEAEWLVLDDLGTEKVTEWSSGILYSILNKRTK---TIITTNL 217 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 40.0 bits (92), Expect = 0.012 Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 2/146 (1%) Frame = -3 Query: 25765 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKT--YLNR 25592 ++++L G G GK+HLA A+ G F+ LM ++ A + ++T L R Sbjct: 119 KSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVR 178 Query: 25591 AILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTSNLPFSQWAEAFSGDATL 25412 + LLV+D++G + N F +V R K + I T+N + + + Sbjct: 179 LLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTNFSDKELNQNMNWQ--- 233 Query: 25411 TAAMLDRLLHHAHILTLTGESYRLKD 25334 + R+ H+A + + G+ +R +D Sbjct: 234 --RINSRMKHNARKVRVIGDDFRERD 257 >ref|NP_803371.1|dnaC Length = 259 Score = 40.0 bits (92), Expect = 0.012 Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 2/146 (1%) Frame = -3 Query: 25765 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKT--YLNR 25592 ++++L G G GK+HLA A+ G F+ LM ++ A + ++T L R Sbjct: 119 KSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVR 178 Query: 25591 AILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTSNLPFSQWAEAFSGDATL 25412 + LLV+D++G + N F +V R K + I T+N + + + Sbjct: 179 LLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTNFSDKELNQNMNWQ--- 233 Query: 25411 TAAMLDRLLHHAHILTLTGESYRLKD 25334 + R+ H+A + + G+ +R +D Sbjct: 234 --RINSRMKHNARKVRVIGDDFRERD 257 >ref|NP_958645.1|77ORF013 Length = 259 Score = 37.0 bits (84), Expect = 0.10 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Frame = -3 Query: 25765 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKT--YLNR 25592 ++++L G G GK+HLA A+ G F+ LM ++ A + ++T L R Sbjct: 119 KSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVR 178 Query: 25591 AILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTS 25463 + LLV+D++G + N F +V R K ++ T+ Sbjct: 179 LLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNNIFTTN 220 >ref|NP_839903.1|putative DnaC protein Length = 294 Score = 35.4 bits (80), Expect = 0.29 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%) Frame = -3 Query: 25762 NIVLIGPSGVGKTHLAIAL----GYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKTYLN 25595 N V +G +G GK+HLA+A+ + T FI ++L+ ++ + K Sbjct: 146 NTVFVGGAGRGKSHLAMAILQEVNENLKDNKFSTLFINISELIREIKNSWNYSDTKAEEE 205 Query: 25594 RAILAPR---LLVIDEIGYLPFGREEANLFFQVVAKRY--EKGSMILTSNL 25457 R R LLVID++G ++ + V+ Y +G+ I+TSNL Sbjct: 206 RLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNTIITSNL 256 >ref|NP_076710.1|DnaC Length = 294 Score = 35.4 bits (80), Expect = 0.29 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 10/112 (8%) Frame = -3 Query: 25762 NIVLIGPSGVGKTHLAIALGYRAAQSGLK-----TRFITAADLMLQLGAAQRQGRLKTYL 25598 N V +G +G GK+HLA+A+ + LK T FI ++L+ ++ + K Sbjct: 146 NTVFVGGAGRGKSHLAMAI-LQEVNENLKDDKFSTLFINISELIREIKNSWNYSDTKAEE 204 Query: 25597 NRAILAPR---LLVIDEIGYLPFGREEANLFFQVVAKRY--EKGSMILTSNL 25457 R R LLVID++G ++ + V+ Y +G+ I+TSNL Sbjct: 205 ERLTTLMRTVDLLVIDDLGTESTFSKDNSWVQGVIYNIYNAREGNTIITSNL 256 >ref|NP_944257.1|putative DnaC Length = 265 Score = 35.0 bits (79), Expect = 0.38 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 4/145 (2%) Frame = -3 Query: 25759 IVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKT---YLNRA 25589 ++ G G GK+HLA+A+ + ++ A L+ ++ A R+ ++ L+ Sbjct: 128 LIFGGNPGTGKSHLALAIQQYVMRHST-AMYLDAMALIRRVRATWRRDAPQSEEEVLHTL 186 Query: 25588 ILAPRLLVIDEIGYLPFGREEANLFFQVVAKRY-EKGSMILTSNLPFSQWAEAFSGDATL 25412 LL IDEIG +E + F+++ +RY + IL +NL + + L Sbjct: 187 GFTVDLLAIDEIGVQRGTDDEQAIVFEIINRRYRDLRPTILMTNLNGAGLKD------FL 240 Query: 25411 TAAMLDRLLHHAHILTLTGESYRLK 25337 A +DRL +L S+R K Sbjct: 241 GARTMDRLYERGTMLPFMWPSHRRK 265 >ref|NP_543070.1|putative replication protein DnaC Length = 252 Score = 35.0 bits (79), Expect = 0.38 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 7/120 (5%) Frame = -3 Query: 25777 VERTENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQ---RQGRLK 25607 +E ++V+ G G GK HLA+++ ++ L + IT D+M A + R K Sbjct: 101 LENGTSLVMTGSCGTGKNHLAVSMAKHIIRNYLASVEIT--DVMRLTRAVKNCWRNDSEK 158 Query: 25606 T--YLNRAILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEK-GSMILTSNL-PFSQWA 25439 T + + LL+IDE+G E + +++ RYE IL SNL P WA Sbjct: 159 TADEVIEHYASMDLLIIDEVGVQFGSAAEMAILQEIINARYESILPTILISNLSPEELWA 218 >ref|NP_510917.1|similar to Escherichia coli DnaC Length = 259 Score = 34.7 bits (78), Expect = 0.50 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 2/103 (1%) Frame = -3 Query: 25765 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKT--YLNR 25592 ++++ G G GK+HLA A+ G F+ LM ++ A + ++T L + Sbjct: 119 KSLIFQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVK 178 Query: 25591 AILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTS 25463 + LLV+D++G + N F +V R K ++ T+ Sbjct: 179 LLSEIDLLVLDDMG-VENTEHTINKLFSIVDNRVGKNNIFTTN 220 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,265,703 Number of Sequences: 14420 Number of extensions: 2125643 Number of successful extensions: 8426 Number of sequences better than 0.5: 14 Number of HSP's better than 0.5 without gapping: 4534 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8389 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 12113131125 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig37 (26,843 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 129,964,176 Number of Sequences: 14420 Number of extensions: 2824695 Number of successful extensions: 10504 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 4470 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10487 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 12408059535 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig38 (30,806 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945089.1|gp58 80 1e-14 ref|NP_958267.1|hypothetical protein 43 0.002 ref|NP_958295.1|hypothetical protein 36 0.20 ref|YP_164321.1|hypothetical protein 36 0.26 ref|NP_817695.1|gp17 36 0.26 >ref|NP_945089.1|gp58 Length = 297 Score = 80.1 bits (196), Expect = 1e-14 Identities = 73/283 (25%), Positives = 124/283 (43%), Gaps = 3/283 (1%) Frame = +2 Query: 22574 LVAFVAVAREKSFTRAAAHLGLSQSAVSHAVRALETKLGARLLARNSRTVSPTEIGERLL 22753 LV F A AR +FTRAA L ++Q AVS V LET LG L R+++ + T G++ Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71 Query: 22754 QSVAPQLEEIDAEMSALSALRDSPMGTIRVTASDHAIRSVLAARLKKFLPKYPGIQVELF 22933 V L + E +AL +++ ++ + + LA R+ +F ++P + V + Sbjct: 72 DRVHAILADC-VEATAL-VMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRIL 129 Query: 22934 ADNGLVDLAAERFDAGVRLGEIVAQDMIA--VRIGPDIRFAVVATKGYFANHPLPGKPDD 23107 G+ +L A FD GV V IA + D+ T + A +P P D Sbjct: 130 VREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPT--FLAGRRVP--PQD 185 Query: 23108 LMQHNCVNLRLPTYGGL-WAWEFEKAGRQLNVRVNGQLTYNSIYDCLDAAMEGLGVAYVP 23284 LM+ + + W F ++ R ++ NS L A+ G G Sbjct: 186 LMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAILGW 245 Query: 23285 EDMALPYIRTGHLVSVLEDWCPYWSGYHLYYPSRRQPSGAMSL 23413 + M P + +G LV + + Y + +P+ R+ + A+++ Sbjct: 246 KHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTM 288 Score = 42.0 bits (97), Expect = 0.004 Identities = 59/255 (23%), Positives = 94/255 (36%), Gaps = 9/255 (3%) Frame = +1 Query: 20095 AVARERSFTRAAAQLGISQSMLSHTIRGLEAXXXXXXXXXXXXXXXXXEAGERLLRVVAP 20274 A AR +FTRAA +L ++Q +S + LE AG++ V Sbjct: 17 AAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHA 76 Query: 20275 RLKDIESELRHVAELSETAAGTIRITATEHAIDTLLWPKLSEILPAYPKIKVELNSDYAL 20454 L D V + E ++ I L +++E +P++ V + + Sbjct: 77 ILADCVEATALV--MKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILVREGV 134 Query: 20455 TDIVQGRYDFGVRLGDGLTRDSSAVRIAPDLQFAIVG-------APSYFASRAMPDKPQD 20613 ++ +D GV RD IA AIV AP++ A R +P PQD Sbjct: 135 FNLNAAEFDIGVY----YIRDVPPPGIAGT---AIVAEDVHAYCAPTFLAGRRVP--PQD 185 Query: 20614 LANHECINLRLPTRGNLYAWE--LKKSQSESNVRVEGQLVFNGIYQILNAALSGFGLAYV 20787 L + R W + + E R + N +L AL G G Sbjct: 186 LMEATLLVAEEQQR-QWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAILG 244 Query: 20788 PEDLARPHLESGRLL 20832 + + P +ESG+L+ Sbjct: 245 WKHMITPLVESGKLV 259 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 42.7 bits (99), Expect = 0.002 Identities = 73/278 (26%), Positives = 91/278 (32%), Gaps = 9/278 (3%) Frame = +1 Query: 2518 QSRPRHTAVPLRKNPHLRPQQSSHETGGRRTGKLPLQPAIERPRL**AGQAAHGTASRRA 2697 ++RP HT P P+ +H RR P P L G A R+ Sbjct: 10 RARPPHTRTPA-------PRTRAHPRAHRRVRTRP------HPHL--------GPARDRS 48 Query: 2698 QSRLGKRPAHPLQHQPGRGYSGLADQPAALRPRQRKDSXXXXXXXXXXXXXXLIG-EPHA 2874 P HP + P R +G P R R R + G P A Sbjct: 49 PDH--PEPDHPCRRAPSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAA 106 Query: 2875 PAPSVRRPAAWP-AGRCLHA--HSATGRPRRADQHQPQREDPARSLCQGGRGPGRYHR-- 3039 PA PA P A C H T PR + P GPG R Sbjct: 107 PAAPEYAPALRPRAPECDRGAHHLRTRAPRTRTRAVP-------------LGPGARVRTP 153 Query: 3040 -QGQRPVLRRSHEDPRAHDNPADRAGPCLASPGNESQRSHGSPLRRQGSRPTGR--DAQR 3210 + +R RR DPR P G RR+G+R GR + Sbjct: 154 VEDRRRTRRRRRPDPRRRVQPRLGVG----------------VHRRRGARRVGRRVRVRA 197 Query: 3211 LPGCGQSRRSGRRNRPSDQPGTTHRIPAPCTGKRHQTR 3324 PG G +RR RR P + P P TG+RH+ R Sbjct: 198 RPGPGAARRPRRRPHP-EHPRAVR--PRRRTGRRHRRR 232 >ref|NP_958295.1|hypothetical protein Length = 215 Score = 36.2 bits (82), Expect = 0.20 Identities = 35/102 (34%), Positives = 42/102 (41%) Frame = +1 Query: 646 RPSPTSGDRYLHCQASLRQWPLPPARLVAGTACRPPPAAGQSGPSTAARRTATEPGCKPG 825 RPSPT+ C S R P C PA+ GP+ + R + P C+P Sbjct: 2 RPSPTT-----FCSGSWRS----PGSAPTAPHCSASPASCSDGPAPRSTRPPSPP-CRPS 51 Query: 826 RPGRLSGTGDAGTHTAQRAGSHPAIGHLEQRRHGTDLAGRTG 951 RP AGT TA AG PA+ RR L GR G Sbjct: 52 RP-----PCTAGTPTACSAG--PAVPMRAARRLAR-LVGRRG 85 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 35.8 bits (81), Expect = 0.26 Identities = 47/158 (29%), Positives = 62/158 (39%), Gaps = 10/158 (6%) Frame = +1 Query: 27133 DHTARRRGTHGLRPNPELQRTGRPRRCAAAP*TGTPARQEGL-PLDRQVRATPG-CPRQV 27306 D A RRG G ++R G A G AR++ P+ R R G C Sbjct: 379 DQPAARRGVQGQAGRRTVERRGLQGADAG----GIRARRDDQEPVRRLPRRRAGVCRADR 434 Query: 27307 HRQGEIQHRRRSRRHAPGGCPARTAHGWRARGHRQ*VRSQGDAGRAFDPSPT-RRGRCGG 27483 R+G+++ R R+ R G RAR +R FD S +GRC G Sbjct: 435 RREGQVRRLRGPRQ-------GRVGQGGRARCAGPRLR--------FDHSGVGEQGRCQG 479 Query: 27484 SALV---AGPARRGV----AQGRLEGSRTGNPARHARQ 27576 G A +GV +GRL+G G P R A Q Sbjct: 480 QGRADQDGGGAHQGVEVLGGRGRLQGHPAGQPERGAVQ 517 >ref|NP_817695.1|gp17 Length = 553 Score = 35.8 bits (81), Expect = 0.26 Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 2/88 (2%) Frame = -1 Query: 950 PVLPAKSVPCRRCSRCPIAGCEPA--R*AVCVPASPVPESRPGRPGLHPGSVAVLRAAVE 777 PV PA+ VP RR R P A PA R P + PG P G + + R V Sbjct: 430 PVEPARRVPQRRVFRVPDAAALPAPLRHGPDAPQHRGHGADPGAPVQRRGHLHIPRHPVR 489 Query: 776 GPDWPAAGGGRHAVPATSLAGGSGHWRR 693 P + GG P + G+ H R Sbjct: 490 HPRLHVSAGGSQECPVRPVCVGARHLPR 517 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 162,192,557 Number of Sequences: 14420 Number of extensions: 3581943 Number of successful extensions: 12364 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 5889 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12333 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 14115460155 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig39 (39,705 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 60 2e-08 ref|NP_958267.1|hypothetical protein 37 0.15 >ref|NP_046572.1|ABC transporter Length = 705 Score = 60.1 bits (144), Expect = 2e-08 Identities = 50/184 (27%), Positives = 97/184 (52%), Gaps = 10/184 (5%) Frame = -3 Query: 20041 HVLEDISLDIRQGEFVSIVGGSGCGKSTLLRLLVGLEEASGGSLRLDGTPIHGTDPA--- 19871 +++EDI+L + + + V I+G SG GKST + L L + S+ L+G I+ D Sbjct: 497 YIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIR 556 Query: 19870 RGIVFQDHRLYPWL---TVEDNVLLA--LANSPLDKAERLARVHAHLELVGLRHFAKAWP 19706 + IV+ D P+L T+++N+ + + ++ A +++ H + + ++ K Sbjct: 557 KRIVYIDEN--PFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSE 614 Query: 19705 --AQLSGGMSQRVAIARGLVNRPKVLLLDEPFGALDALTRAQLQDELARIWLTEGITTVL 19532 + LS G QR+A+AR ++++P+VL+LDE +D + + L R+ +L Sbjct: 615 NGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM----DCLIIL 670 Query: 19531 VTHD 19520 +TH+ Sbjct: 671 ITHN 674 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 37.0 bits (84), Expect = 0.15 Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 9/99 (9%) Frame = +3 Query: 13176 GPGQPDIRQSAQGRYRHRSGLGPAQPAGRLLPA---------GTGQVRRTLGIRARPTPR 13328 GPG +R + R R R P P R+ P G +V R + +RARP P Sbjct: 145 GPGAR-VRTPVEDRRRTRRRRRP-DPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPG 202 Query: 13329 LGQQPHPQLPRPEPQHQERPGAVRPHRHGLPRRQRPGAL 13445 ++P RP P+H P AVRP R R +R +L Sbjct: 203 AARRPRR---RPHPEH---PRAVRPRRRTGRRHRRRASL 235 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 167,186,696 Number of Sequences: 14420 Number of extensions: 3400742 Number of successful extensions: 13470 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 5928 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 13443 length of database: 3,019,461 effective HSP length: 115 effective length of database: 1,361,161 effective search space used: 17857071159 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig40 (47,244 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 44 0.002 ref|NP_958267.1|hypothetical protein 43 0.002 ref|NP_612899.1|hypothetical protein 37 0.23 ref|NP_064745.1|gp7 37 0.23 >ref|NP_046572.1|ABC transporter Length = 705 Score = 43.5 bits (101), Expect = 0.002 Identities = 45/199 (22%), Positives = 94/199 (47%), Gaps = 6/199 (3%) Frame = -1 Query: 32469 WVVKNLSLSLAKGEFVSLIGPSGCGKSTLLKLAAGMQAPTLGSLSIDGRPITGPGP---E 32299 ++V++++L L + + V +IG SG GKST K + + S+ ++G I Sbjct: 497 YIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIR 556 Query: 32298 RGVVFQEYGVFPWL-SVRQNIEFGLTLXXXXXXXXXXXAIVDKYL-ELMGLADFRDALPG 32125 + +V+ + F + ++++N+ G + +++ L ++ + G Sbjct: 557 KRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG 616 Query: 32124 T-LSGGMRQRVALARAYAVAPDYLLMDEPFAALDAQTRLVMHDLLLELQGRERKGVLLIT 31948 + LS G +QR+ALARA P L++DE + +D ++++ L + ++LIT Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCL----IILIT 672 Query: 31947 HSVDEALYLSSKIVLISAR 31891 H+ + K+V + R Sbjct: 673 HNDPSNFKYNKKLVFRNNR 691 Score = 38.1 bits (87), Expect = 0.078 Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 3/191 (1%) Frame = -3 Query: 45319 LCGGNGAGKSTFLSILMGITQRDAGTIRLDGREVHFQRPSDALDAGIAIITQELEP-IPD 45143 + G +G GKSTF L + + +I L+G +++ D L I+ + P + Sbjct: 514 IIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDIN---RYDHLSIRKRIVYIDENPFLFK 570 Query: 45142 LTVAENIWLGREPRHVNCLIDNRELNRRTQALLDDLGFEVDAKLPMR--RLSVAQTQLVE 44969 T+ EN+ +G E N I+N + + + +L + KL LS Q Q + Sbjct: 571 GTIKENLCMG-EIFDQN-EIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLA 628 Query: 44968 IAKAFSYDCRVMIMDEPTSAIGERETETLFAAIRRLTARGAGIIYVSHRLSELAQIADEY 44789 +A+A + +V+I+DE S I T+ ++ + R+ II ++H + ++ Sbjct: 629 LARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCL---IILITHNDPSNFKY-NKK 684 Query: 44788 SIFRDGAFVES 44756 +FR+ +ES Sbjct: 685 LVFRNNRIIES 695 Score = 36.6 bits (83), Expect = 0.23 Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 6/175 (3%) Frame = -3 Query: 44611 QDISLQVRKGEILGIYGLMGSGRSEFLNCIYGL-TAPDAGLAQLNGQELPIGDPAATIRA 44435 +DI+L + + + + I G G+G+S F + L PD + LNG ++ D +IR Sbjct: 500 EDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSI-YLNGLDINRYD-HLSIRK 557 Query: 44434 GISLVTEDRKETGLVLGSSITENIALAA---YDKLSNLSIINMRKE--RNLAESMAQRLR 44270 I + E+ + +I EN+ + +++ N I++ E NL + + +L Sbjct: 558 RIVYIDEN----PFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLS 613 Query: 44269 IKTASLDLPVSSMSGGNQQKVVLAKCLSTEPVCLFCDEPTRGIDEGAKQEIYRLL 44105 S++S G +Q++ LA+ + +P L DE ID + IY L Sbjct: 614 ENG-------SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETL 661 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 43.1 bits (100), Expect = 0.002 Identities = 66/242 (27%), Positives = 88/242 (36%), Gaps = 44/242 (18%) Frame = +3 Query: 6939 RTERGRQ*ATRTGPRRSRLHQQAVQPAHRPGARAYPPVTGTGTGSARDTPADRPVPEHRG 7118 R R R TRT R+R H +A + R R +P + G ARD D P P+H Sbjct: 7 RLRRARPPHTRTPAPRTRAHPRAHR---RVRTRPHPHL-----GPARDRSPDHPEPDHPC 58 Query: 7119 RIQGQRNRPARHPHEPLRQNTGSGRGLQ---------------------------RARRG 7217 R R H P+ + R + A R Sbjct: 59 RRAPSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRP 118 Query: 7218 RSAACSPDARCRQDRHPRRHSAQT----GQAHRRGMDDHAPTYRDRRQDHR*PPIRSAAH 7385 R+ C A + R PR + G R ++D T R RR D R ++ Sbjct: 119 RAPECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPR-RRVQPRLG 177 Query: 7386 GGDHRFEPSREMGWQ-RLPECPG--------RRSHP----AYGPHRRAGRCVRCSHQRAS 7526 G HR +R +G + R+ PG RR HP A P RR GR R +RAS Sbjct: 178 VGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRRHR---RRAS 234 Query: 7527 LQ 7532 L+ Sbjct: 235 LR 236 Score = 36.2 bits (82), Expect = 0.30 Identities = 61/222 (27%), Positives = 74/222 (33%), Gaps = 20/222 (9%) Frame = +3 Query: 6549 NARMPRP---CGPRSKLSSSSRPMPWYS---DSSPS---------AAPTYRHGGRTWHET 6683 + R P P PR+ +RP P D SP AP+ G H Sbjct: 15 HTRTPAPRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRAPSRPAAGPRRHPP 74 Query: 6684 HERSTPHAAAGR*RDDQPAGAAPHPAERLPPAVRQGWTDGAGPGTQRPARSDPARHHDAR 6863 R+ P A D G A HPA + A R D HH Sbjct: 75 VARTRPRTRAPECAPDP--GPAVHPAAPGCAPAAPAAPEYAPALRPRAPECDRGAHHLRT 132 Query: 6864 PLGLRGLQGVETGP-LHHRHPGDLRDRTERGRQ*ATRTGPRRSRLHQQAVQPAHRPGARA 7040 + V GP R P + R RT R R R PRR + V R GAR Sbjct: 133 RAPRTRTRAVPLGPGARVRTPVEDRRRTRRRR----RPDPRRRVQPRLGVGVHRRRGARR 188 Query: 7041 YPPVTGT----GTGSARDTPADRPVPEHRGRIQGQRNRPARH 7154 G G+AR P RP PEH ++ +R RH Sbjct: 189 VGRRVRVRARPGPGAAR-RPRRRPHPEHPRAVRPRRRTGRRH 229 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 36.6 bits (83), Expect = 0.23 Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 1/99 (1%) Frame = -1 Query: 534 GQKNPRGAPRGAPFPKGGTGRF*TQQKIPGALFWGNP-PL*GPKKAQGRGKENPIWVPPP 358 G+K G P G PKG G Q + G+ P P A RG+ P Sbjct: 331 GEKGDPGGPAGPQGPKGERGEAGPQGPMGARGERGDTGPRGEPGPAGPRGERGETGPQGP 390 Query: 357 PGKKKSGRANSPKGKSFPAKKRKEFWEGESSPFSPAGKP 241 G + P+G+ PA R E GE+ P P G+P Sbjct: 391 MGARGERGETGPRGEPGPAGPRGE--RGETGPQGPRGEP 427 >ref|NP_064745.1|gp7 Length = 540 Score = 36.6 bits (83), Expect = 0.23 Identities = 40/206 (19%), Positives = 81/206 (39%) Frame = -3 Query: 47101 SARLSCSVRWTRSAMAKRSAPGWAGSGTATTGMPAALAAITPLSESSQTRHWCRCAPRRS 46922 +A ++ T + ++ +A A + A+ +A A + S ++ + A S Sbjct: 96 TAEVNAEASETAAGLSATAAATSATNAGASETAASASATASATSATNSATSASQAATSAS 155 Query: 46921 AASSKTAGCGLERGTSVPEANTAIGSACRRTTAAMKGSGEEDAIASPTCRSRSQSMSSTA 46742 AA+ + A +A GSA +TA + S + + + + + S+T Sbjct: 156 AAAVSEGNAATSETNAANSATSASGSA---STATTQASAASVSATNAATSASNAATSATN 212 Query: 46741 PGISGASTIARPMRAISASNSVPASTPRPACRRAMSSQKARLLTPFQACRSCVPGAIPYS 46562 S A+ A ++ ++V S A A ++ A T QA + + + Sbjct: 213 AAASQAAAATSETNAAASESTVTTSATNAATSEANAATSASTATT-QATNAATSASTAST 271 Query: 46561 SCNSAAWVDIHSGSESISRPSMSKIA 46484 S +AA + ++ S + S S + A Sbjct: 272 SATNAATSETNAASSASSAASSATSA 297 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 226,642,982 Number of Sequences: 14420 Number of extensions: 4906696 Number of successful extensions: 18234 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 7238 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 18200 length of database: 3,019,461 effective HSP length: 116 effective length of database: 1,346,741 effective search space used: 21050908571 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig41 (48,571 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_025041.1|putative transposase B 151 5e-36 ref|NP_536395.1|ISBt3 transposase subunit protein 136 2e-31 ref|NP_859396.1|hypothetical protein 132 3e-30 ref|NP_958229.1|gene 55 protein 132 4e-30 ref|NP_046572.1|ABC transporter 104 9e-22 ref|NP_958267.1|hypothetical protein 37 0.14 >ref|YP_025041.1|putative transposase B Length = 280 Score = 151 bits (382), Expect = 5e-36 Identities = 83/213 (38%), Positives = 124/213 (58%), Gaps = 2/213 (0%) Frame = -1 Query: 48532 LCLDLKASGLPCNRKTVAASMRRQGLXXXXXRKFKATTNSRHSLPVADNLLRQDFTAAAP 48353 L L+L+ L C+ + ++ M+ + K+KA + S+ + NLL+QDF+ Sbjct: 54 LNLELQPLQLRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGL 113 Query: 48352 NRKWVGDMTYLRTEE-GWLYLAVIIDLYSRRVIGWAMNERMTAELACDALRMALWRRKQP 48176 N+KW DMTY++T+ GW YL+ I+DL+SRR+IG++ +++M +L L A+ R Sbjct: 114 NQKWTADMTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTIT 173 Query: 48175 QGVIVHTDRGSQYCSAAYRELLRAHRLRGSMSAKGNCYDNACAESFFHSLKVECIHG-ER 47999 +I+HTD GSQY S Y + L +R S S KG YDNA ESF SLK EC++ Sbjct: 174 GDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPV 233 Query: 47998 FGTHAQMRQTVFEYIETDYNRQRRHSTLGYISP 47900 F + +FEY+ YNR+R HS+LGY +P Sbjct: 234 FEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTP 266 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 136 bits (342), Expect = 2e-31 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 3/223 (1%) Frame = -1 Query: 48544 GAPRLCLDLKASGLPCNRKTVAASMRRQGLXXXXXRKFKATTNSRHSLPVADNLLRQDFT 48365 G P++ + G+ R TV M+ QGL K TT + + P + + + F Sbjct: 47 GVPKVWKQMNREGITVARCTVGRLMKLQGLRGAVRGKRVRTTITDVTAPRPLDRVNRQFK 106 Query: 48364 AAAPNRKWVGDMTYLRTEEGWLYLAVIIDLYSRRVIGWAMNERMTAELACDALRMALWRR 48185 A PN+ WV D TY+ T +GWLY+A +ID+++RR++GW ++ MT + DAL AL+ R Sbjct: 107 ADRPNQLWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSSSMTTDFVLDALEQALYAR 166 Query: 48184 KQPQG--VIVHTDRGSQYCSAAYRELLRAHRLRGSMSAKGNCYDNACAESFFHSLKVECI 48011 + + +I H+DRGSQY S Y E L + S+ ++G+ YDNA AE+ K E I Sbjct: 167 QPGEDGTLIHHSDRGSQYVSIRYSERLAEAGIEPSVGSRGDSYDNALAETINGLYKTELI 226 Query: 48010 HGER-FGTHAQMRQTVFEYIETDYNRQRRHSTLGYISPEAFEA 47885 H + T + E++ YN R LGYI P EA Sbjct: 227 HRRAPWKTRESVELATLEWVAW-YNHHRLMEPLGYIPPAEAEA 268 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 132 bits (332), Expect = 3e-30 Identities = 79/219 (36%), Positives = 114/219 (52%) Frame = -1 Query: 48544 GAPRLCLDLKASGLPCNRKTVAASMRRQGLXXXXXRKFKATTNSRHSLPVADNLLRQDFT 48365 G ++ L G+ R TVA M GL K TT SR ++ D + RQ F Sbjct: 67 GVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQ-FV 125 Query: 48364 AAAPNRKWVGDMTYLRTEEGWLYLAVIIDLYSRRVIGWAMNERMTAELACDALRMALWRR 48185 A P++ WV D TY+ T +G++Y+A IID+++ ++GW ++ M DAL ALW R Sbjct: 126 AERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWAR 185 Query: 48184 KQPQGVIVHTDRGSQYCSAAYRELLRAHRLRGSMSAKGNCYDNACAESFFHSLKVECIHG 48005 + P G I H+D+GSQY S AY E L+ L S + G+ YDNA AES K E IH Sbjct: 186 R-PSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHR 244 Query: 48004 ERFGTHAQMRQTVFEYIETDYNRQRRHSTLGYISPEAFE 47888 + + A++ +++ YN +R LG+ P E Sbjct: 245 KSWKNRAEVELATLTWVDW-YNNRRLLGRLGHTPPAEAE 282 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 132 bits (331), Expect = 4e-30 Identities = 67/176 (38%), Positives = 101/176 (57%) Frame = -1 Query: 48409 HSLPVADNLLRQDFTAAAPNRKWVGDMTYLRTEEGWLYLAVIIDLYSRRVIGWAMNERMT 48230 H N L + F PN+ W GD+TY+ T + W YLAV++DL++R+ +GWAM+ Sbjct: 119 HEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPD 178 Query: 48229 AELACDALRMALWRRKQPQGVIVHTDRGSQYCSAAYRELLRAHRLRGSMSAKGNCYDNAC 48050 + L AL MA R +P GV+ H+D+GS Y S +R+LL +++R SMS +GNC+DN+ Sbjct: 179 SRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSP 238 Query: 48049 AESFFHSLKVECIHGERFGTHAQMRQTVFEYIETDYNRQRRHSTLGYISPEAFEAR 47882 E FF SLK E + + + ++ + +YI Y+ R H G + P E R Sbjct: 239 MERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENR 294 >ref|NP_046572.1|ABC transporter Length = 705 Score = 104 bits (259), Expect = 9e-22 Identities = 103/521 (19%), Positives = 226/521 (43%), Gaps = 14/521 (2%) Frame = +1 Query: 44524 IFGAVVVCSMVSAVIPLILQYVLDSLSQKSSTFIYLLAAMAGFVWLSQCGKDYINGRAQI 44703 + G+ + +V +IP L+ +SL + FI ++ L +C D++ I Sbjct: 183 VAGSFYIKFLVDLIIPRSLR---ESLITITLIFISMV--------LIRCIFDFVRSYLII 231 Query: 44704 FV-HETNSKLGEEYIKGVLKCGTNTIIDKGAAYTVQALNNAKASNNTLIQSALQSIAPTI 44880 + ++ + ++ Y V K N ++ + N+ + + + +I I Sbjct: 232 KLSYKVDKEMSNVYFNKVTKLPINFFENREDGEVISRFNDGIYIKDFFSANFVTAIIDII 291 Query: 44881 FEMAVAISVLLATGNYVVTSVILVYILLFGLISRRFIDALSRVFRQCIFFNMETAKRVNG 45060 + + + V+L N ++ I++ ILL ++ F D L + ++ + ++ + Sbjct: 292 --LILGLGVILYRTNNILFLTIILPILLLSCLAILFFDHLKKKNQKLMEDKAKSTSLLIN 349 Query: 45061 IVSGIETVKILNAKNIIIEKYNVDNNKLINAWRDFYKKNLSLSLAKSTLFIVIFLGSLWF 45240 + + TV LN + +EK+++ +K +N+ K +S + K + + LW Sbjct: 350 FLKNMTTVYSLNKTSFFLEKFHLTYDKQLNSTFSVAKAVISNEILKGLIQNSFTIIILWV 409 Query: 45241 TGRKVIAGSIGIGEFVMINTYLFQVCRPYESLLQTIGNVIESFAGYKPLIDII------- 45399 R+V+ S+ +G + INT + + +L ++ ++ D++ Sbjct: 410 GTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHVASIRFFDVVNYPVQQD 469 Query: 45400 ---RLSEID---GYKSRNISIHSRPSLKLESICYRYGESEGIDDVSMTFKPGTFNVITGS 45561 L+E+D K+ N++I + P + ++D+++ +I G Sbjct: 470 SNENLTELDFIQNIKTVNLNIGADPMRYI------------VEDINLILDRKDKVLIIGE 517 Query: 45562 SGSGKTTLIKLIMRLIRPQSGQVEYGGVNIYNIDDDIFHEKFSLVTQDLGIFNESLEFNL 45741 SG+GK+T K + +L + + G++I D ++ + ++ +F +++ NL Sbjct: 518 SGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENL 577 Query: 45742 RVANPNASDLDLYEALSKAQLSYLVDRSPEKLGIIVGERGLKLSGGERQRLTIARIFLRN 45921 + + ++ A +Q + ++ + E G LS G++QRL +AR L Sbjct: 578 CMGEIFDQN-EIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQ 636 Query: 45922 PDVIIFDESTSSLDYKTERYIIEEIKKTFSDKIILMIAHRD 46044 P V+I DES S++D + I E + + D +I++I H D Sbjct: 637 PQVLILDESLSNIDPDNTKLIYETLHR--MDCLIILITHND 675 Score = 84.3 bits (207), Expect = 1e-15 Identities = 106/542 (19%), Positives = 225/542 (41%), Gaps = 22/542 (4%) Frame = +3 Query: 27954 RNQMLAIILVFLTLLGAFCNVGFGLLIKATIDTLSSASKDLNTLIIFSVLFVSIRFLTPM 28133 RN+++ +++ +L V IK +D + S +LI +++F+S+ + + Sbjct: 163 RNKLIVFVILLTSLFVVGLAVAGSFYIKFLVDLIIPRSLR-ESLITITLIFISMVLIRCI 221 Query: 28134 VHGAKEFVCSKLSDEEEAHLRHQAFRTLHNFDHDYQVAKNTGDVIRRVQVGLSAFKSITR 28313 + ++ KLS + + + + F + ++ + G+VI R G+ I Sbjct: 222 FDFVRSYLIIKLSYKVDKEMSNVYFNKVTKLPINFFENREDGEVISRFNDGIY----IKD 277 Query: 28314 ALFLNVMPVALDVLLIIGIVTYFFGLGXXXXXXXXXXXXXXXXF------YFTNRRMSFL 28475 N + +D++LI+G+ + + + + Sbjct: 278 FFSANFVTAIIDIILILGLGVILYRTNNILFLTIILPILLLSCLAILFFDHLKKKNQKLM 337 Query: 28476 AEVSDTDRALAAFTHDSYLNQESVRLFIPIQDELNQHWQFIDRYLSAQQKSRRNLYWLTT 28655 + + + L F N +V L + D+ L++ + + Sbjct: 338 EDKAKSTSLLINFLK----NMTTVYSLNKTSFFLEKFHLTYDKQLNSTFSVAKAVISNEI 393 Query: 28656 LTSVVSALGCLLILIWGSLSITHQMMTIGGYLM---LTAYLFQIFLPLNSLGLSFRQIKK 28826 L ++ ++IL G+ + + M++G L L A+L + S+ +Q Sbjct: 394 LKGLIQNSFTIIILWVGTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHV 453 Query: 28827 G---LYDMTQM-------KDILDLASVESERNIDLHIRPGA-PILLRFEDLSLQSRDGSE 28973 +D+ +++ +L +++ + ++L+I GA P+ ED++L Sbjct: 454 ASIRFFDVVNYPVQQDSNENLTELDFIQNIKTVNLNI--GADPMRYIVEDINL------- 504 Query: 28974 IFTKLQGTLHLNGLAFVVGKSGIGKSSIVRMLCGLTKPSFGRLTINGYDCQHLSQESIRA 29153 L ++G+SG GKS+ + L L K + +NG D SIR Sbjct: 505 -------ILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 29154 NMAIASQDVVLFNSTLKQNLLVANP-NATDDELLIVLNKVGLGYLFDDQRGGLDCQVGER 29330 + ++ LF T+K+NL + + + E ++++ D++ ++ E Sbjct: 558 RIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQ--YSYKLSEN 615 Query: 29331 GQKMSGGEKQRISLARALLKSAPLIILDEPTAALDSENTKNIRLLIDAVAQNACLLV-IT 29507 G +S G+KQR++LARA+L ++ILDE + +D +NTK L+ + + + CL++ IT Sbjct: 616 GSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTK---LIYETLHRMDCLIILIT 672 Query: 29508 HD 29513 H+ Sbjct: 673 HN 674 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 37.4 bits (85), Expect = 0.14 Identities = 63/217 (29%), Positives = 75/217 (34%), Gaps = 27/217 (12%) Frame = -3 Query: 17834 PAAEQRVET--------AERRVDDPPEEHRSDRRATPGRRPAASPRAKPGRARQPAKAVG 17679 P A +RV T A R D PE RRA RPAA PR P AR + Sbjct: 27 PRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRAPS--RPAAGPRRHPPVARTRPRTRA 84 Query: 17678 XXXXXXXXXXXXXXXXXXXXXRGSAGRWPGVPARREAGSRLDRTAGRHRPGRQWPAARGR 17499 +A + PA R DR G H + P R R Sbjct: 85 PECAPDPGPAVHPAAPGCAPAAPAAPEY--APALRPRAPECDR--GAHHLRTRAPRTRTR 140 Query: 17498 IEP--DGERLQLPVE--LRPGSRPWPEHPRHQRPQRGRGDLPAR-------------RPQ 17370 P G R++ PVE R R P+ R +P+ G G R RP Sbjct: 141 AVPLGPGARVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPG 200 Query: 17369 AGSQDLHPAPELHP--PGLGRPVGADRPGTGRRHGQR 17265 G+ P HP P RP R TGRRH +R Sbjct: 201 PGAA-RRPRRRPHPEHPRAVRP----RRRTGRRHRRR 232 Score = 37.0 bits (84), Expect = 0.18 Identities = 40/138 (28%), Positives = 48/138 (34%), Gaps = 2/138 (1%) Frame = -1 Query: 20596 RQRLHLQRDHHPVRGFRPHPRLPVXXXXXXXXXXXXGDQEPRPEH--RSGIGHPGRGALH 20423 R R H R H VR RPHP L P P+H R P G Sbjct: 22 RTRAH-PRAHRRVRT-RPHPHL--------GPARDRSPDHPEPDHPCRRAPSRPAAGPRR 71 Query: 20422 DPDRLRPQLTQPEHRHAQENENPSPHRYRGCPGCSPVDVRGPATSPGPVSRRRDEHHPDA 20243 P R T+P R + +P P + PGC+P P +P + R E A Sbjct: 72 HPPVAR---TRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPA-LRPRAPECDRGA 127 Query: 20242 AELRLRRGDAACAAVARG 20189 LR R AV G Sbjct: 128 HHLRTRAPRTRTRAVPLG 145 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 242,782,328 Number of Sequences: 14420 Number of extensions: 5113189 Number of successful extensions: 16416 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 7188 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 16366 length of database: 3,019,461 effective HSP length: 116 effective length of database: 1,346,741 effective search space used: 21646168093 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig42 (49,041 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_851958.1|hypothetical protein 107 8e-23 ref|NP_046572.1|ABC transporter 50 3e-05 ref|NP_862860.1|gp21 44 0.001 ref|NP_878229.1|C 43 0.003 ref|YP_025058.1|DnaC 42 0.006 ref|NP_061611.1|orf 21 42 0.007 ref|NP_839879.1|gpC 41 0.010 ref|NP_038305.1|ORF5 40 0.016 ref|NP_075485.1|hypothetical protein 40 0.021 ref|NP_803371.1|dnaC 40 0.021 ref|YP_195258.1|hypothetical protein 38 0.081 ref|NP_958645.1|77ORF013 37 0.18 ref|NP_620626.1|putative transposase 37 0.24 ref|NP_064745.1|gp7 37 0.24 >ref|NP_851958.1|hypothetical protein Length = 218 Score = 107 bits (268), Expect = 8e-23 Identities = 53/121 (43%), Positives = 84/121 (69%) Frame = -1 Query: 33996 VNAMNVRPIRNDQDYRAALKALSPLFDNEPEPGTPEGDRFEVMLTLVEAYEAKHFPVDLP 33817 +N + R I+N +++ AA++ L L ++ +PGT + D FE++ L+E YE++ FP+D P Sbjct: 1 MNRTSWRIIKNSEEHAAAMERLIELASSDLQPGTEDFDEFELLGLLIEHYESREFPMDKP 60 Query: 33816 NPVDAIKFRMEQLGLTASDLSPAIGRTNRVYEVLNGTRSLTLPMIWKLHSLFGIPAESLI 33637 +P++AIKFRM+Q GL+ +D+ IG ++V EVLN R L+L MI +LH GIPA+ LI Sbjct: 61 DPIEAIKFRMDQQGLSYADMKQYIGSASKVSEVLNRKRPLSLSMIRRLHDGLGIPADILI 120 Query: 33636 K 33634 + Sbjct: 121 Q 121 >ref|NP_046572.1|ABC transporter Length = 705 Score = 49.7 bits (117), Expect = 3e-05 Identities = 51/229 (22%), Positives = 99/229 (43%), Gaps = 8/229 (3%) Frame = +2 Query: 21569 IRNVSKHFGAFQA---LNDINLDIHSGELVALLGPSGCGKTTLLRIIAGLETPDSGNIAF 21739 I+ V+ + GA + DINL + + V ++G SG GK+T + ++ L +I Sbjct: 483 IKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYL 542 Query: 21740 HGEDVSGHD---VRDRNVGFVFQHYALFRHMTVFDNVAFGLRMKPRRERPSEQIIADKVH 21910 +G D++ +D +R R V ++ ++ LF+ T+ +N+ G + I + H Sbjct: 543 NGLDINRYDHLSIRKRIV-YIDENPFLFKG-TIKENLCMGEIFD--QNEIENACIMSQCH 598 Query: 21911 ELLAMV--QLDWLADRYPEQLSGGXXXXXXXXXXXXVEPKILLLDEPFGALDAKVRKELR 22084 E + + Q + LS G +P++L+LDE +D K + Sbjct: 599 EFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIY 658 Query: 22085 RWLARLHEEINLTSVFVTHDQEEAMEVADRIVVMNKGVIEQIGAPGEVY 22231 L R+ + + +TH+ + ++V N +IE + + Y Sbjct: 659 ETLHRM----DCLIILITHNDPSNFKYNKKLVFRNNRIIESSYSENKEY 703 >ref|NP_862860.1|gp21 Length = 256 Score = 43.9 bits (102), Expect = 0.001 Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 10/168 (5%) Frame = -2 Query: 1604 ELAGLAFVERT---------ENIVLIGPSGVGKTHLAIA-LGYRAAQSGLKTRFITAADL 1455 E LAFV+R NIV G +G GK+HLA A + Y + + FI DL Sbjct: 99 EAEKLAFVKRICREWSEGARNNIVFQGEAGTGKSHLAFAMMKYLSETTKEIAIFINVTDL 158 Query: 1454 MLQLGAAQRQGRLKTYLNRAILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMIL 1275 ++++ A Q + +L I + + LV+D++G ++ + ++ KR + ++ Sbjct: 159 LMKIKADFSQ---EEFLVNKIASAKFLVLDDLGMEKDSEWSFSILYNILNKR---ANTVI 212 Query: 1274 TSNLPFSQWAEAFSGDATLTAAMLDRLLHHAHILTLTGESYRLKDKRK 1131 T+NL + + + G ++ M + + ++H++ LK+KRK Sbjct: 213 TTNLTAQEIQKRY-GRPFMSRLM--KGVDNSHLMVFND----LKNKRK 253 >ref|NP_878229.1|C Length = 97 Score = 42.7 bits (99), Expect = 0.003 Identities = 17/37 (45%), Positives = 29/37 (78%) Frame = -3 Query: 35035 QVKQIRKATGLSQAKFAAMIDVQVGTLRNWEQGRREP 34925 ++K IRKA GL+QAKF+ + + +GT++N+E G ++P Sbjct: 6 KLKAIRKAEGLTQAKFSEISGIALGTVKNYESGHKDP 42 >ref|YP_025058.1|DnaC Length = 260 Score = 42.0 bits (97), Expect = 0.006 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 18/125 (14%) Frame = -2 Query: 1571 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLM----LQLGAAQRQGRLKTYL 1404 EN++L GP G GKT LA+A+ G FI+ A+L LQ A + RL + Sbjct: 102 ENVILFGPRGAGKTSLALAMLTSLRDEGQSGLFISTAELSNLMGLQYDAPDVRLRL-VGI 160 Query: 1403 NRAILAPRLLVIDEIG--------YLPFGREEANLFFQVVAKRYE------KGSMILTSN 1266 RA+ +L++D+ G P R+ L ++V R + + S I+T+N Sbjct: 161 ERAMKEAGVLLLDDFGTEGGMKLDIKPVRRDMQELIYRVANARLDFESNRPRLSTIITTN 220 Query: 1265 LPFSQ 1251 S+ Sbjct: 221 NEMSE 225 >ref|NP_061611.1|orf 21 Length = 257 Score = 41.6 bits (96), Expect = 0.007 Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 2/146 (1%) Frame = -2 Query: 1571 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKT--YLNR 1398 ++++L G G GK+HLA A+ G F+ LM ++ AA + ++T L R Sbjct: 117 KSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIQMLMDRIKAAYNKNAVETTDELVR 176 Query: 1397 AILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTSNLPFSQWAEAFSGDATL 1218 + LLV+D++G + N F +V R K + I T+N + + + Sbjct: 177 LLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTNFSDKELNQNMNWQ--- 231 Query: 1217 TAAMLDRLLHHAHILTLTGESYRLKD 1140 + R+ H+A + + G+ +R +D Sbjct: 232 --RINSRMKHNARKVRVIGDDFRERD 255 >ref|NP_839879.1|gpC Length = 97 Score = 41.2 bits (95), Expect = 0.010 Identities = 18/41 (43%), Positives = 29/41 (70%) Frame = -3 Query: 35035 QVKQIRKATGLSQAKFAAMIDVQVGTLRNWEQGRREPTGPA 34913 ++K +R+A GLSQ+KF +I++ + TL+ +E G EP G A Sbjct: 6 KIKALREAEGLSQSKFCEIIELPLSTLKKYEGGNFEPGGTA 46 >ref|NP_038305.1|ORF5 Length = 260 Score = 40.4 bits (93), Expect = 0.016 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 4/106 (3%) Frame = -2 Query: 1568 NIVLIGPSGVGKTHLAI----ALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKTYLN 1401 NIVLIG +GVGK+HLA AL + G+ FI DL+ ++ + L+ Sbjct: 121 NIVLIGNTGVGKSHLAYSALKALSDHTKKMGV---FINVVDLLAKI---KEDFNLEAEYI 174 Query: 1400 RAILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTSNL 1263 R I LV+D++G + + + ++ KR + I+T+NL Sbjct: 175 RRISEAEWLVLDDLGTEKVTEWSSGILYSILNKRTK---TIITTNL 217 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 40.0 bits (92), Expect = 0.021 Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 2/146 (1%) Frame = -2 Query: 1571 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKT--YLNR 1398 ++++L G G GK+HLA A+ G F+ LM ++ A + ++T L R Sbjct: 119 KSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVR 178 Query: 1397 AILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTSNLPFSQWAEAFSGDATL 1218 + LLV+D++G + N F +V R K + I T+N + + + Sbjct: 179 LLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTNFSDKELNQNMNWQ--- 233 Query: 1217 TAAMLDRLLHHAHILTLTGESYRLKD 1140 + R+ H+A + + G+ +R +D Sbjct: 234 --RINSRMKHNARKVRVIGDDFRERD 257 >ref|NP_803371.1|dnaC Length = 259 Score = 40.0 bits (92), Expect = 0.021 Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 2/146 (1%) Frame = -2 Query: 1571 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKT--YLNR 1398 ++++L G G GK+HLA A+ G F+ LM ++ A + ++T L R Sbjct: 119 KSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVR 178 Query: 1397 AILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTSNLPFSQWAEAFSGDATL 1218 + LLV+D++G + N F +V R K + I T+N + + + Sbjct: 179 LLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNN-IFTTNFSDKELNQNMNWQ--- 233 Query: 1217 TAAMLDRLLHHAHILTLTGESYRLKD 1140 + R+ H+A + + G+ +R +D Sbjct: 234 --RINSRMKHNARKVRVIGDDFRERD 257 >ref|YP_195258.1|hypothetical protein Length = 582 Score = 38.1 bits (87), Expect = 0.081 Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 9/114 (7%) Frame = -1 Query: 25809 GPERAGRI---AGGWKRVTAITPRT*SESGNSQADTGIESGGPDAGGRQGLSSSRVSGAC 25639 GPER G AG W T+I+P + G+ D GP GG G GA Sbjct: 150 GPERPGARGGDAGNWVNTTSISPSNGGQGGDKSGD------GPGGGGGGG-------GAP 196 Query: 25638 SGRVFGLRSSCCGVIGRGSFALSSGSGPVLPCRTWAIS------SMSRSITMAD 25495 G G+ C G G G S +G VL + + + S+S +T+A+ Sbjct: 197 GGGGGGVGQDCSGGAGGGGGGGSRYNGSVLSLTSTSTNIGNGYISLSYDLTVAE 250 >ref|NP_958645.1|77ORF013 Length = 259 Score = 37.0 bits (84), Expect = 0.18 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Frame = -2 Query: 1571 ENIVLIGPSGVGKTHLAIALGYRAAQSGLKTRFITAADLMLQLGAAQRQGRLKT--YLNR 1398 ++++L G G GK+HLA A+ G F+ LM ++ A + ++T L R Sbjct: 119 KSLILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVR 178 Query: 1397 AILAPRLLVIDEIGYLPFGREEANLFFQVVAKRYEKGSMILTS 1269 + LLV+D++G + N F +V R K ++ T+ Sbjct: 179 LLSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNNIFTTN 220 >ref|NP_620626.1|putative transposase Length = 362 Score = 36.6 bits (83), Expect = 0.24 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = -2 Query: 48890 RHPQTNGKDERFHRSLKAEVLNGRSFHTLHQAQEAFDNWRVVYNHQRPHEALRMVTP 48720 R PQ+NGK ERFH++ + Q +++ YN +R H++L TP Sbjct: 295 RSPQSNGKIERFHQNYTKLFVFEEKILNAVSLQNKLNDYYYFYNFERVHKSLNFQTP 351 >ref|NP_064745.1|gp7 Length = 540 Score = 36.6 bits (83), Expect = 0.24 Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 8/177 (4%) Frame = -2 Query: 20465 AKASPKPVSQAGSSAGSSTCRKACQGLAPRQAAASSTSRGMSASTGCRVRTTKGRVMKVS 20286 A S SQA +SA ++ + + AA S+TS SAST TT+ VS Sbjct: 140 ATNSATSASQAATSASAAAVSEGNAATSETNAANSATSASGSASTA----TTQASAASVS 195 Query: 20285 A--------RAMPSGV*AIFRPNSPASWPTDPAGA*SAVRAMPATAVGRANGRSIMASMI 20130 A A S A + A+ T+ A + S V A + AS Sbjct: 196 ATNAATSASNAATSATNAAASQAAAATSETNAAASESTVTTSATNAATSEANAATSASTA 255 Query: 20129 LRPGNG*RTSTQASRVPITPLSSAATRAVPKLSLSAASTRGAEMTSQNCAQVSWDAW 19959 TS + T +++ T A S SAAS+ + S++ A + D++ Sbjct: 256 TTQATNAATSASTASTSATNAATSETNAASSAS-SAASSATSAQASKDAALAALDSF 311 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 239,325,859 Number of Sequences: 14420 Number of extensions: 5134965 Number of successful extensions: 17933 Number of sequences better than 0.5: 14 Number of HSP's better than 0.5 without gapping: 7213 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 17846 length of database: 3,019,461 effective HSP length: 116 effective length of database: 1,346,741 effective search space used: 21857606430 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig43 (78,395 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_490637.1|hypothetical protein 1137 0.0 ref|NP_490627.1|hypothetical protein 552 e-156 ref|NP_599046.1|tail protein 329 2e-89 ref|NP_958082.1|gp26 302 4e-81 ref|NP_052275.1|D protein 298 5e-80 ref|NP_046784.1|gpD 286 3e-76 ref|NP_878226.1|gpD 285 5e-76 ref|NP_839876.1|gpD 280 1e-74 ref|NP_490622.1|hypothetical protein 219 3e-56 ref|NP_490626.1|hypothetical protein 214 1e-54 ref|NP_758937.1|ORF46 195 5e-49 ref|NP_490633.1|hypothetical protein 191 1e-47 ref|NP_958077.1|gp22 174 1e-42 ref|NP_052270.1|similar to P2 tail tube protein FII, Swiss-Prot ... 174 1e-42 ref|NP_839871.1|FII 170 2e-41 ref|NP_046779.1|gpFII 167 1e-40 ref|NP_878221.1|gpFII 167 1e-40 ref|NP_046783.1|gpU 145 7e-34 ref|NP_839875.1|gpU 145 7e-34 ref|NP_878225.1|gpU 144 2e-33 ref|NP_958081.1|gp25 141 1e-32 ref|NP_052274.1|F protein 137 2e-31 ref|NP_859325.1|hypothetical protein 120 1e-26 ref|NP_859159.1|hypothetical protein 120 1e-26 ref|NP_050579.1|hypothetical protein 120 1e-26 ref|NP_612957.1|hypothetical protein 118 7e-26 ref|NP_049540.1|hypothetical protein 118 7e-26 ref|NP_758934.1|ORF43 114 1e-24 ref|NP_852738.1|putative antirepressor protein AntB 114 2e-24 ref|NP_490625.1|hypothetical protein 111 1e-23 ref|NP_817764.1|gp3 109 4e-23 ref|NP_463507.1|putative anti-repressor promoter 103 3e-21 ref|NP_839894.1|putative antirepressor 94 1e-18 ref|NP_663641.1|putative anti-repressor 94 1e-18 ref|NP_108684.1|major structural protein 94 3e-18 ref|NP_899372.1|exsB protein 93 4e-18 ref|NP_758935.1|ORF44 92 7e-18 ref|NP_490623.1|hypothetical protein 91 2e-17 ref|NP_878223.1|gpE 87 3e-16 ref|NP_839873.1|gpE 87 3e-16 ref|NP_046781.1|gpE 86 4e-16 ref|NP_839872.1|gpE+E' 83 4e-15 ref|NP_046780.1|gpE+E' 82 6e-15 ref|NP_878222.1|gpE+E' 82 6e-15 ref|NP_996680.1|putative antirepressor 80 2e-14 ref|NP_076640.1|anti-repressor 79 5e-14 ref|NP_052271.1|Orf51; P2 E homolog; tail protein 77 3e-13 ref|NP_958079.1|gp23 77 3e-13 ref|NP_049995.1|anti-repressor 75 7e-13 ref|NP_438118.1|antirepressor 75 1e-12 ref|NP_795546.1|putative P1-type antirepressor 75 1e-12 ref|NP_958078.1|gp23.5 75 1e-12 ref|NP_112664.1|INT 73 5e-12 ref|YP_024720.1|gp47 72 8e-12 ref|NP_758932.1|ORF40 70 2e-11 ref|NP_510905.1|similar to phage phi PVL antirepressor 69 9e-11 ref|NP_958633.1|77ORF014 69 9e-11 ref|NP_046569.1|IMPB 67 3e-10 ref|NP_878224.1|gpT 67 3e-10 ref|NP_835526.1|anti repressor 65 1e-09 ref|NP_046782.1|gpT 64 2e-09 ref|NP_839874.1|gpT 64 2e-09 ref|NP_958564.1|putative antirepressor 62 1e-08 ref|NP_803362.1|anti-repressor 60 3e-08 ref|NP_058473.1|anti repressor 60 3e-08 ref|NP_052273.1|G protein 60 3e-08 ref|NP_758933.1|ORF41 60 4e-08 ref|NP_612990.1|Ea10 protein 60 4e-08 ref|NP_851954.1|hypothetical protein 60 4e-08 ref|NP_049478.1|putative single-stranded DNA binding protein 60 4e-08 ref|NP_490624.1|hypothetical protein 59 5e-08 ref|NP_040621.1|Putative single-stranded DNA binding protein 59 7e-08 ref|NP_859358.1|Ea10 protein 59 9e-08 ref|NP_859192.1|Ea10 protein 59 9e-08 ref|NP_050517.1|ea10 59 9e-08 ref|NP_052272.1|Orf52; tail protein; probably produced by a tran... 57 3e-07 ref|NP_075302.1|gp35 57 3e-07 ref|NP_958080.1|gp24 56 4e-07 ref|NP_490634.1|hypothetical protein 52 1e-05 ref|NP_599068.1|unknown 50 2e-05 ref|NP_040813.1|integrase 50 2e-05 ref|NP_852561.1|DNA integration 50 3e-05 ref|NP_817766.1|gp5 49 9e-05 ref|YP_164054.1|transcriptional regulator 45 8e-04 ref|NP_490636.1|hypothetical protein 45 0.001 ref|YP_024717.1|gp44 44 0.002 ref|NP_075512.2|hypothetical protein 44 0.002 ref|NP_803346.1|tail fiber protein 44 0.002 ref|NP_817710.1|gp32 44 0.002 ref|YP_025041.1|putative transposase B 42 0.007 ref|YP_024713.1|gp40 42 0.011 ref|NP_852540.1|hypothetical protein 42 0.011 ref|YP_164268.1|hypothetical protein 41 0.015 ref|NP_510895.1|similar to phage phi 11 integrase 41 0.015 ref|NP_663639.1|putative cI-like repressor 41 0.019 ref|NP_958267.1|hypothetical protein 41 0.019 ref|NP_049403.2|putative tail component protein 40 0.043 ref|YP_024676.1|gp03 39 0.057 ref|NP_690786.1|ORF2 39 0.057 ref|NP_612875.1|putative recombinase 39 0.074 ref|NP_463477.1|putative tape-measure protein 39 0.074 ref|NP_038334.1|ORF33 39 0.097 ref|NP_112667.1|CI 39 0.097 ref|NP_861696.1|gp39.2 conserved hypothetical protein 38 0.13 ref|NP_076576.1|repressor 38 0.16 ref|NP_046584.1|putative transglycosylase 37 0.22 ref|NP_945096.1|gp65 37 0.22 ref|NP_543053.1|putative integrase 37 0.28 ref|NP_438114.1|integrase-like protein 37 0.37 ref|NP_795541.1|putative integrase 37 0.37 ref|NP_542287.1|unknown 37 0.37 ref|NP_958565.1|putative protein 37 0.37 ref|NP_918983.1|putative tail fiber protein 37 0.37 ref|NP_818160.1|gp87 36 0.48 ref|NP_943898.1|gp44 clamp loader subunit 36 0.48 ref|NP_943879.1|membrane integrity protector 36 0.48 >ref|NP_490637.1|hypothetical protein Length = 895 Score = 1137 bits (2940), Expect = 0.0 Identities = 560/902 (62%), Positives = 693/902 (76%), Gaps = 3/902 (0%) Frame = -3 Query: 64734 VLQRLMAEYGLKPVSGDRKWMRGGTCPACGKRELYTHAEHPWVLRCGRQSRCGAEYHIKD 64555 +L+RL +YGL P+ G K+MR G CP CGK+ELYT + PW +RCGR +CG +HIK+ Sbjct: 1 MLRRLQDQYGLTPIKGT-KYMRKGECPTCGKKELYTLVDSPWFIRCGR-GKCGDTWHIKE 58 Query: 64554 LFDDLFDDWSKRAPASEQQPTASARAYLEFARGFRLELIEGWFSQEHYWSREANAGSATV 64375 ++ +LFDDWSKR+PA++++P ASARAYL ARGF L LI+GW+SQE+YW R+ GSATV Sbjct: 59 IYPELFDDWSKRSPATDKEPAASARAYLAHARGFDLALIDGWYSQENYWDRDLEIGSATV 118 Query: 64374 RFDMGDGGYWERLIDQPHRFGKQKARFKPGYSYRGRWWCPPCVDLQEVGELWLVEGIFDA 64195 RF + GGYWERLID+P RFGK+KARFKPG S RG WWCPP VDLQEV ELW+VEGIFDA Sbjct: 119 RFPLKKGGYWERLIDRPSRFGKKKARFKPGDSPRGVWWCPPSVDLQEVKELWIVEGIFDA 178 Query: 64194 IALLHHGIAAVSVMSCNGYPEERLRELKAQREAAGDKLPTLVWALDNDPAARTYTRKHAR 64015 IALLHHGI AVS MS N +PE+ LREL R G KLP L+WALDN+P A YTR+ Sbjct: 179 IALLHHGIDAVSAMSSNAFPEQSLRELATAR---GGKLPKLIWALDNEPGAHRYTRRWVT 235 Query: 64014 KARELGFRCEAAQIPQRDGRKTDWNDLHQRWMFEKDXXXXXXXXXRDIKAARHQGALLLA 63835 +AR LG+ CEAAQ+PQR+ RK DWNDLHQRWMF D +D+K ARH+GALL+A Sbjct: 236 EARALGYVCEAAQLPQRNNRKFDWNDLHQRWMFIDDAAERVAQIEKDLKTARHEGALLIA 295 Query: 63834 ESAEEKGVLMYEWTPRQEFHFGFENRLYWFKMDLEKFHKAMQALEESERHEDRLLNDRQR 63655 ESA EK +LMY+W R EFHF F NRLYWFK+D+EKF+KAMQ+LE+S+ H+D+LLN +Q Sbjct: 296 ESAAEKALLMYDWGKRGEFHFRFANRLYWFKLDIEKFNKAMQSLEDSDNHDDQLLNQKQM 355 Query: 63654 RDKALRQCGAVVEIANCYPEFLYYQRNEVTDEAWYYARIDFPHDGGSVKNTFTGGQVSAA 63475 RDKAL+Q G VVEIANC+P+ LY+QRNEVTDE+WYY RID P D SVKNTFT QV+AA Sbjct: 356 RDKALQQAGGVVEIANCFPQALYFQRNEVTDESWYYFRIDRPDDE-SVKNTFTSAQVAAA 414 Query: 63474 SEFKKRLIHMAPGAVFTGSGQQLDRIMKDQLFNIKTVQTIDFVGYSKEYQAYVFGDIAVR 63295 SEFKKRL+ +A GA+FTGSG QLD+IMK QL +KTV TID++GYS+E+ YV GD+AVR Sbjct: 415 SEFKKRLLGVAAGAIFTGSGAQLDQIMKLQLTGLKTVATIDYLGYSREHACYVLGDVAVR 474 Query: 63294 DGVVSEVNDEDFFEFGKLRLKTLQKSIRISIQRDAKAYREDWMPLLWLCFRHRGVVAMAF 63115 GV+ + N EDFFEF KLRLKTLQ+SI++ I DAK YR +W+ LW CF +G+VA+AF Sbjct: 475 GGVIEKANAEDFFEFQKLRLKTLQRSIKLQIATDAKDYRPEWLDWLWTCFGAKGLVALAF 534 Query: 63114 WLGSLFAEQIRTQHSSFPFLELTGKPGAGKSTLLRFLWKLLGR-DYEGFDAQKSTKAGRQ 62938 W GSLFAEQIR + SFPFLE TG+ GAGKSTL+ FLWKLLGR D EG D K TKAG + Sbjct: 535 WFGSLFAEQIRAEFQSFPFLEATGEAGAGKSTLITFLWKLLGRADEEGQDPSKMTKAGLR 594 Query: 62937 RHMGQVSNMPIVFKESDRNEPDKAH--AKTFDWDELKEFFDGGTLGTKGVKTAGNETYEP 62764 R + Q+SNMP+V E+DR++ +A AK+FDWDE K F+G LG G KTAGNETYEP Sbjct: 595 RWLTQLSNMPMVMLEADRSDNSRAGGAAKSFDWDEFKPLFNGRALGVTGQKTAGNETYEP 654 Query: 62763 PFRGTIAISQNADVNASEAILTRICKIWFPELVATDESREAADKLNLMRVGELSHFMLKA 62584 PFRGT+ +SQNA V ASEAI+TRI K+ F T ES+ AAD LN + V E+SHF+L A Sbjct: 655 PFRGTLVMSQNATVQASEAIMTRIVKLHFIRPEITRESQAAADNLNHLGVLEVSHFLLMA 714 Query: 62583 MRVETQVLATFAQRVVVHEASLRRMKELRNERIAKNHSQMMALVDCLRLVCPLTDEMLHV 62404 +R E +VL F +R+ VH A+LR +K++R ER+ NH+QMMALVD LRLV PL++ L Sbjct: 715 IRAEARVLECFRERLKVHSATLRALKQIRIERLILNHAQMMALVDALRLVVPLSEHQLAC 774 Query: 62403 TQQQLMTMALERQAAINSDHPLVAEFWEVYEYLESTGESPQVNHSADPKLIAINLNQFAE 62224 QQ LMTMALERQ A+N+D P VAEFWEVY+YLE+ E P +NHS +P IAINLN+F + Sbjct: 775 AQQTLMTMALERQDAVNADAPEVAEFWEVYDYLENLSEEPVLNHSKNPGTIAINLNEFVK 834 Query: 62223 KASEHRQNLADLKTLRPLLKDCRSHKLLHENKAVYSAIRAAQAAKNSMFDKPTTLKCWVF 62044 A++HRQ +AD TLR LLK+ R HK + E KAV SA+R+A A +N + ++P+T+KCW+F Sbjct: 835 LAADHRQKVADAATLRDLLKESRRHKFI-EYKAVDSAVRSAHARQNPLTNRPSTVKCWIF 893 Query: 62043 KA 62038 +A Sbjct: 894 QA 895 >ref|NP_490627.1|hypothetical protein Length = 424 Score = 552 bits (1423), Expect = e-156 Identities = 280/400 (70%), Positives = 328/400 (82%), Gaps = 4/400 (1%) Frame = -1 Query: 73766 YPYPICRVVVDGRDITAAISPRLIAISLTDNRGLEADTLDIQLSDHDGLLAIPPRGATVR 73587 YP P+ R+ VDG DI ISPRLIA+ LTDNRGLEAD L + LSDHDGLLAIPPRGA + Sbjct: 26 YPVPVFRLTVDGNDIAQLISPRLIALDLTDNRGLEADQLSVTLSDHDGLLAIPPRGAVLH 85 Query: 73586 LWLGWSDSGLVDKGSYTVDETEHSGAPDVLSIRARSADLREGLKTKRERSWDQ-KALGDV 73410 LWLGWSDSGLVDKG+YTVDETEHSGAPDVLSIRARSADLR+GLK KRERSW K LGDV Sbjct: 86 LWLGWSDSGLVDKGTYTVDETEHSGAPDVLSIRARSADLRKGLKVKRERSWSSPKTLGDV 145 Query: 73409 IKAIATSNGLTAVIAPGLAQIPLAHLDQANESDANLLARLGEQHDAIATVKAGRLLFMSA 73230 + IA N L V+AP LA +P+ LDQANESDANLL RLGE DA+ATVKAG LL + A Sbjct: 146 LTDIALGNNLKPVLAPALAGLPILQLDQANESDANLLTRLGEDFDAVATVKAGCLLCLPA 205 Query: 73229 GKSATASGLPLPHITLTRADGDQHRFLQADRDSYSGVRAYYYDVNSAEKKEAIAGEK-DN 73053 G TASGL LPHI LTR DGDQHR+LQADRDSY GVRAY+YDVNSA+K+EAIAG K DN Sbjct: 206 GGGKTASGLALPHINLTRQDGDQHRYLQADRDSYDGVRAYFYDVNSAKKQEAIAGAKGDN 265 Query: 73052 LKDLRHVYTDQTSALNAARGEWSRLQRGTATLSYTLARGRPDLIPELTYSLSGIKDEIAA 72873 LKDLRH Y+D+ SAL AAR EW+RLQRG+ATLSY LARGRPDLIPELTY+L G+K EI A Sbjct: 266 LKDLRHTYSDRQSALRAARAEWNRLQRGSATLSYALARGRPDLIPELTYTLQGVKTEIDA 325 Query: 72872 ITWLGSHVAHSVTAD-AYTTSLELESKLPDGDEVLDLAEEV-GDYTGVLAWYRDEKTGKQ 72699 I W G +V HS++AD Y TSLELESKLP+ D V DLA++ GDYTG++A+YRDEK+G + Sbjct: 326 IIWYGGNVQHSLSADGGYITSLELESKLPE-DLVSDLADDTGGDYTGIIAYYRDEKSGTE 384 Query: 72698 HRVTAGDQTRPRRLTHLYASKSSAERAVEKEWKKMQAARS 72579 +TAGDQ++PRRL +LY++K SA+RAV++EW +++ ++ Sbjct: 385 KTITAGDQSKPRRLRYLYSTKGSAKRAVDREWMRLKKTQA 424 Score = 114 bits (284), Expect = 2e-24 Identities = 58/111 (52%), Positives = 83/111 (74%), Gaps = 2/111 (1%) Frame = -2 Query: 69937 DAVYTLTGIKDKIAAIIWLGAHVAHSFTADA-YTTSLELESKLPDGEEVLDLAEEVG-DY 69764 + YTL G+K +I AIIW G +V HS +AD Y TSLELESKLP+ + V DLA++ G DY Sbjct: 311 ELTYTLQGVKTEIDAIIWYGGNVQHSLSADGGYITSLELESKLPE-DLVSDLADDTGGDY 369 Query: 69763 TGVLAWYWDEKTGKESRVTADD*TRPKRLTPLYTSKAAAEHSVEREWKRVQ 69611 TG++A+Y DEK+G E +TA D ++P+RL LY++K +A+ +V+REW R++ Sbjct: 370 TGIIAYYRDEKSGTEKTITAGDQSKPRRLRYLYSTKGSAKRAVDREWMRLK 420 Score = 64.3 bits (155), Expect = 2e-09 Identities = 34/59 (57%), Positives = 38/59 (64%) Frame = -2 Query: 71842 RAA*PEENPGSGPGSAFSYILAGGRPDLIPELTYTLTGIKDEIAAIIWLGAHFAHSFTA 71666 RAA E N + SY LA GRPDLIPELTYTL G+K EI AIIW G + HS +A Sbjct: 281 RAARAEWNRLQRGSATLSYALARGRPDLIPELTYTLQGVKTEIDAIIWYGGNVQHSLSA 339 >ref|NP_599046.1|tail protein Length = 611 Score = 329 bits (844), Expect = 2e-89 Identities = 173/322 (53%), Positives = 216/322 (67%), Gaps = 2/322 (0%) Frame = -2 Query: 76630 LRASMMGADGSVSADFEKISALATRLGDRLPGTTAQFQEMMTMLRRQGISAQSILGGTGE 76451 L+ +MM A+G V F+ I+ LA LG++LPGTTA FQ MM ML RQGI A++ILGG G+ Sbjct: 69 LKVAMMDANGEVGKSFQDINKLAIGLGNQLPGTTADFQNMMQMLVRQGIPAENILGGVGK 128 Query: 76450 AAAYLAVQLKMGSSEAAEFAAKMQDSTRTTEADMMGLMDTIQRTFYLGVDPTNMLQGFAS 76271 A AYLAVQLK AAEFAAKMQD+T T DMMGL DTIQ+ FYLGVD TNML F Sbjct: 129 ATAYLAVQLKKTPEAAAEFAAKMQDATGTASEDMMGLFDTIQKAFYLGVDDTNMLSFFTK 188 Query: 76270 ISPALSMIRKSGLEAANTLAPLLVMMDQAGMSGESAGNALRNVFQSGFKTDKVAKANKML 76091 S L M+ K GL+AA +LAP+ VMMDQ GM+GESAGNALR V QSG K+ NK++ Sbjct: 189 TSSVLKMVNKDGLQAAQSLAPISVMMDQMGMNGESAGNALRKVIQSGLSVKKIRDVNKVM 248 Query: 76090 --KKLGISLDFTDGKGEFGGLEKLFAXXXXXXXXXXXXXTAVISEIFGDDSQNLQVLNTL 75917 +KLG+ LDFTDGKG FGGL+ +F T V+ IFGDD++ LQV+N L Sbjct: 249 ARQKLGVQLDFTDGKGSFGGLDNMFRQLAKLRKLTDVKRTGVLKAIFGDDAETLQVVNAL 308 Query: 75916 IDKGLDGYREVEAKMKAQADLRKRVDDQLKTLTNVIDAAQGSWTNAMAEFGAAVAPELKG 75737 IDKG DGY +++ KM QA L KRV QL TL+N+ +A G+ TN +A G A + + K Sbjct: 309 IDKGKDGYDQIQQKMNKQASLNKRVQAQLGTLSNLWEAMTGTATNGLAAIGGAFSGDAKN 368 Query: 75736 LIQWLGNVASGIGAWARENPQL 75671 + QWLG + +A ENP++ Sbjct: 369 ITQWLGELGEKFTKFADENPRV 390 >ref|NP_958082.1|gp26 Length = 389 Score = 302 bits (773), Expect = 4e-81 Identities = 162/365 (44%), Positives = 217/365 (59%), Gaps = 41/365 (11%) Frame = -1 Query: 73757 PICRVVVDGRDITAAISPRLIAISLTDNRGLEADTLDIQLSDHDGLLAIPPRGATVRLWL 73578 P + ++ +DIT+ S RLI++++TDNRG EAD LDI+L D DG + +P RGA + LWL Sbjct: 15 PAFMLTLNSQDITSNFSDRLISLTMTDNRGFEADQLDIELDDTDGKVELPLRGAVLTLWL 74 Query: 73577 GWSDSGLVDKGSYTVDETEHSGAPDVLSIRARSADLREGLKTKRERSWDQKALGDVIKAI 73398 GW S L++KG +TVDE EH GAPD L+IRARSAD R L ++RE SW LG+++ I Sbjct: 75 GWQGSALLNKGDFTVDEIEHRGAPDTLTIRARSADFRGTLNSRREESWHDTTLGELVSTI 134 Query: 73397 ATSNGLTAVIAPGLAQIPLAHLDQANESDANLLARLGEQHDAIATVKAGRLLFMSAGKSA 73218 A N LTA +A L QIP+ H+DQ+ ESDA L RL +++ A +VKAG+LLF+ AG + Sbjct: 135 AKRNKLTASVADSLKQIPVPHIDQSQESDAVFLTRLADRNGATVSVKAGKLLFLKAGSAL 194 Query: 73217 TASGLPLPHITLTRADGDQHRFLQADRDSYSGVRAYYYDV-------------------- 73098 TASG P+P +TLTR+DGD+H+F ADR +Y+GV A + Sbjct: 195 TASGKPIPQMTLTRSDGDRHQFAIADRGAYTGVTAKWLHTKDPKPQKQKVTLKRQPKEKH 254 Query: 73097 ---------------------NSAEKKEAIAGEKDNLKDLRHVYTDQTSALNAARGEWSR 72981 + A + E +AGE DN+ L VY + A+ AA+ +W + Sbjct: 255 LRALEHPKAKPVSKKTKAQKEHEAREGEYMAGEADNVLALTTVYASKAQAMRAAQAKWDK 314 Query: 72980 LQRGTATLSYTLARGRPDLIPELTYSLSGIKDEIAAITWLGSHVAHSVTADAYTTSLELE 72801 LQRG A S TLA GR DL PE +SG K I +WL S V H++ +TT LELE Sbjct: 315 LQRGVAEFSITLALGRADLFPETPVRVSGFKRVIDEQSWLISKVTHNMNKSGFTTGLELE 374 Query: 72800 SKLPD 72786 KL D Sbjct: 375 VKLTD 379 >ref|NP_052275.1|D protein Length = 389 Score = 298 bits (763), Expect = 5e-80 Identities = 160/365 (43%), Positives = 215/365 (58%), Gaps = 41/365 (11%) Frame = -1 Query: 73757 PICRVVVDGRDITAAISPRLIAISLTDNRGLEADTLDIQLSDHDGLLAIPPRGATVRLWL 73578 P + ++ +DIT+ S RLI++++TDNRG EAD LDI+L D DG + +P RGA + LWL Sbjct: 15 PAFMLTLNSQDITSNFSDRLISLTMTDNRGFEADQLDIELDDTDGKVELPLRGAVLTLWL 74 Query: 73577 GWSDSGLVDKGSYTVDETEHSGAPDVLSIRARSADLREGLKTKRERSWDQKALGDVIKAI 73398 GW S L++KG +TVDE EH GAPD+L+IRARSAD R L ++RE SW +G+++ I Sbjct: 75 GWQGSALLNKGDFTVDEIEHRGAPDILTIRARSADFRGTLNSRREESWHDTTIGELVSTI 134 Query: 73397 ATSNGLTAVIAPGLAQIPLAHLDQANESDANLLARLGEQHDAIATVKAGRLLFMSAGKSA 73218 A N LTA +A L +IP+ H+DQ+ ESDA L RL +++ A +VKAG+LLF+ AG + Sbjct: 135 AKRNKLTASVADSLKKIPVPHIDQSQESDAVFLTRLADRNGATVSVKAGKLLFLKAGSAM 194 Query: 73217 TASGLPLPHITLTRADGDQHRFLQADRDSYSGVRAYYYDVN------------------- 73095 TASG P+P +TLTR DGD+H+F ADR +Y+GV A + Sbjct: 195 TASGKPVPQMTLTRNDGDRHQFAIADRGAYTGVTAKWLHTKDPKPQKQKVTLKRKPKEKH 254 Query: 73094 ----------------------SAEKKEAIAGEKDNLKDLRHVYTDQTSALNAARGEWSR 72981 A + E +AGE DN+ L VY + A+ AA+ +W + Sbjct: 255 LRALEHPKAKPVSKKTKAKKEPEAREGEYMAGEADNVLALTTVYASKAQAMRAAQAKWDK 314 Query: 72980 LQRGTATLSYTLARGRPDLIPELTYSLSGIKDEIAAITWLGSHVAHSVTADAYTTSLELE 72801 LQRG A S TLA GR DL PE +SG K I WL S V H++ +TT LELE Sbjct: 315 LQRGVAEFSITLALGRADLFPETPVRVSGFKRVIDEQAWLISKVTHNLNNSGFTTGLELE 374 Query: 72800 SKLPD 72786 KL D Sbjct: 375 VKLSD 379 >ref|NP_046784.1|gpD Length = 387 Score = 286 bits (731), Expect = 3e-76 Identities = 157/364 (43%), Positives = 212/364 (58%), Gaps = 40/364 (10%) Frame = -1 Query: 73757 PICRVVVDGRDITAAISPRLIAISLTDNRGLEADTLDIQLSDHDGLLAIPPRGATVRLWL 73578 P +++D RDIT IS RL++++LTDNRG EAD LDI+L+D DG + +P RGA + +++ Sbjct: 15 PDYMLMLDSRDITGNISDRLMSMTLTDNRGFEADQLDIELNDADGQVGLPVRGAVLTVYI 74 Query: 73577 GWSDSGLVDKGSYTVDETEHSGAPDVLSIRARSADLREGLKTKRERSWDQKALGDVIKAI 73398 GW LV KG +TVDE EH GAPDV++IRARSAD R L ++RE SW LG ++KAI Sbjct: 75 GWKGFALVCKGKFTVDEVEHRGAPDVVTIRARSADFRGTLNSRREGSWHDTTLGAIVKAI 134 Query: 73397 ATSNGLTAVIAPGLAQIPLAHLDQANESDANLLARLGEQHDAIATVKAGRLLFMSAGKSA 73218 AT N L A +AP LA I + H+DQ+ ESDA L RL E++ +VK G+LLF+ AG+ Sbjct: 135 ATRNRLEASVAPSLAGIKIPHIDQSQESDAKFLTRLAERNGGEVSVKMGKLLFLKAGQGV 194 Query: 73217 TASGLPLPHITLTRADGDQHRFLQADRDSYSGVRAYYY---------------------- 73104 TASG +P +T+TR+DGD+H F ADR +Y+GV A + Sbjct: 195 TASGKKIPQVTITRSDGDRHHFAIADRGAYTGVTAKWLHTKDPKPQKQKVKLKRKKKEKH 254 Query: 73103 ------------------DVNSAEKKEAIAGEKDNLKDLRHVYTDQTSALNAARGEWSRL 72978 V A + E +AGE DN+ L VY + A+ AA+ +W +L Sbjct: 255 LRALEHPKAKPVRQKKAPKVPEAREGEYMAGEADNVFALTTVYATKAQAMRAAQAKWDKL 314 Query: 72977 QRGTATLSYTLARGRPDLIPELTYSLSGIKDEIAAITWLGSHVAHSVTADAYTTSLELES 72798 QRG A S +LA GR D+ E +SG K I W + V H + +TTSLELE Sbjct: 315 QRGVAEFSISLATGRADIYTETPVKVSGFKRVIDEQDWTITKVTHFLNNSGFTTSLELEV 374 Query: 72797 KLPD 72786 +L D Sbjct: 375 RLSD 378 >ref|NP_878226.1|gpD Length = 387 Score = 285 bits (729), Expect = 5e-76 Identities = 159/364 (43%), Positives = 214/364 (58%), Gaps = 40/364 (10%) Frame = -1 Query: 73757 PICRVVVDGRDITAAISPRLIAISLTDNRGLEADTLDIQLSDHDGLLAIPPRGATVRLWL 73578 P +++D RDIT IS RL++++LTDNRG EAD LDI+L+D DG + +P RGA + +++ Sbjct: 15 PDYMLMLDSRDITGNISDRLMSMTLTDNRGFEADQLDIELNDADGQVGLPVRGAVLTVYI 74 Query: 73577 GWSDSGLVDKGSYTVDETEHSGAPDVLSIRARSADLREGLKTKRERSWDQKALGDVIKAI 73398 GW LV KG +TVDE EH GAPDV++IRARSAD R L ++RE SW LG +++AI Sbjct: 75 GWKGFALVCKGKFTVDEVEHRGAPDVVTIRARSADFRGTLNSRREGSWHDTTLGAIVEAI 134 Query: 73397 ATSNGLTAVIAPGLAQIPLAHLDQANESDANLLARLGEQHDAIATVKAGRLLFMSAGKSA 73218 A+ N L A +AP LA I + H+DQ+ ESDA L RL E++ +VK G+LLF+ AG+ Sbjct: 135 ASRNRLEASVAPSLAGIKIPHIDQSQESDAKFLTRLAERNGGEVSVKMGKLLFLKAGQGV 194 Query: 73217 TASGLPLPHITLTRADGDQHRFLQADRDSYSGVRAYY----------YDVNSAEKK---- 73080 TASG +P IT+TR+DGD+H F ADR +Y+GV A + VN KK Sbjct: 195 TASGKKIPQITITRSDGDRHHFAIADRGAYTGVTAKWLHTKDPKPQKQKVNLKRKKKEKH 254 Query: 73079 --------------------------EAIAGEKDNLKDLRHVYTDQTSALNAARGEWSRL 72978 E +AGE DN+ L VY + A+ AA+ +W +L Sbjct: 255 LRALEHPKAKPVTQKKAPKVPEAREGEYMAGEADNVFALTTVYATKAQAMRAAQAKWDKL 314 Query: 72977 QRGTATLSYTLARGRPDLIPELTYSLSGIKDEIAAITWLGSHVAHSVTADAYTTSLELES 72798 QRG A S +LA GR D+ E +SG K I W + VAH + +TTSLELE Sbjct: 315 QRGVAEFSISLATGRADIYTETPVKVSGFKRVIDEQDWTITKVAHFLNNSGFTTSLELEV 374 Query: 72797 KLPD 72786 +L D Sbjct: 375 RLSD 378 >ref|NP_839876.1|gpD Length = 387 Score = 280 bits (716), Expect = 1e-74 Identities = 154/364 (42%), Positives = 211/364 (57%), Gaps = 40/364 (10%) Frame = -1 Query: 73757 PICRVVVDGRDITAAISPRLIAISLTDNRGLEADTLDIQLSDHDGLLAIPPRGATVRLWL 73578 P +++D RDIT IS RL++++LTDNRG EAD LDI+L+D DG + +P RGA + +++ Sbjct: 15 PDYMLMLDSRDITGNISDRLMSMTLTDNRGFEADQLDIELNDADGQVGLPVRGAVLTVYI 74 Query: 73577 GWSDSGLVDKGSYTVDETEHSGAPDVLSIRARSADLREGLKTKRERSWDQKALGDVIKAI 73398 GW LV KG +TVDE EH GAPDV++IRARSAD R L ++RE SW LG +++AI Sbjct: 75 GWKGFALVCKGKFTVDEVEHRGAPDVVTIRARSADFRGTLNSRREGSWHDTTLGAIVEAI 134 Query: 73397 ATSNGLTAVIAPGLAQIPLAHLDQANESDANLLARLGEQHDAIATVKAGRLLFMSAGKSA 73218 A+ N L A +AP LA I + H+DQ+ ESDA L RL E++ +VK G+LLF+ AG+ Sbjct: 135 ASRNRLEASVAPSLAGIKIPHIDQSQESDAKFLTRLAERNGGEVSVKMGKLLFLKAGQGV 194 Query: 73217 TASGLPLPHITLTRADGDQHRFLQADRDSYSGVRAYYY---------------------- 73104 TASG P +T+TR+DGD+H F ADR +Y+GV A + Sbjct: 195 TASGKKNPQVTITRSDGDRHHFAIADRGAYTGVTAKWLHTKDPKPQKQKVKLKRKKKEKH 254 Query: 73103 ------------------DVNSAEKKEAIAGEKDNLKDLRHVYTDQTSALNAARGEWSRL 72978 V A + E +AGE DN+ L +Y + A+ AA+ +W +L Sbjct: 255 LRALEHPKAKPVTQKKAPKVPEAREGEYMAGEADNVFALTTIYATKAQAMRAAQAKWDKL 314 Query: 72977 QRGTATLSYTLARGRPDLIPELTYSLSGIKDEIAAITWLGSHVAHSVTADAYTTSLELES 72798 QRG A S +LA GR D+ E +SG K I W + V H + +TTSLELE Sbjct: 315 QRGVAEFSISLATGRADIYTETPVRVSGFKRVIDEQDWTITKVTHFLNNSGFTTSLELEV 374 Query: 72797 KLPD 72786 +L D Sbjct: 375 RLSD 378 >ref|NP_490622.1|hypothetical protein Length = 171 Score = 219 bits (558), Expect = 3e-56 Identities = 102/148 (68%), Positives = 124/148 (83%) Frame = -2 Query: 78391 RTITLPPLARKMESYRGGGMNGPVKVDQGMSDDGIQLEWTLGGLDLVVLRQFGATTADAV 78212 ++ TLPPLARKME++RGGGMNGPVK D G DDGIQ EWTLGGLDL L+Q+GA +A+ V Sbjct: 24 KSCTLPPLARKMEAFRGGGMNGPVKADLGFDDDGIQFEWTLGGLDLTALKQYGAVSANGV 83 Query: 78211 LLRFAGSYQRDDTAEISAVEVVVRGRHEEINLGDAEPGEDTEVSIVTTCSYYKLIVDGNT 78032 +LRFAGS+Q+DDT E+++VE+VVRGRHE I +GDA+PGEDTE I TTCSYYKL+V+G Sbjct: 84 MLRFAGSFQQDDTGEVTSVEIVVRGRHETIEMGDAQPGEDTEHKITTTCSYYKLVVNGEE 143 Query: 78031 EIEIDLLNMIEIVNGVDMLAAQRAAIGM 77948 IEIDLLN +E VNG D+L AQR AIG+ Sbjct: 144 VIEIDLLNFVEKVNGKDLLEAQRKAIGL 171 >ref|NP_490626.1|hypothetical protein Length = 146 Score = 214 bits (545), Expect = 1e-54 Identities = 102/140 (72%), Positives = 121/140 (86%) Frame = -2 Query: 74218 MMMALGQFVFSLSTLAYQEFQRQTDWRHGSTSRIGVRPARQFLGPGDDSITLPGVLLPEL 74039 MM++LG FVFSL TLAYQEFQRQT+WRH S+SRIG +PARQF+G GDD+ITLPGVLLPEL Sbjct: 1 MMLSLGMFVFSLHTLAYQEFQRQTEWRHASSSRIGAQPARQFVGRGDDAITLPGVLLPEL 60 Query: 74038 TGGIPSLDEVREMADTGRAWVLVEGTGRLYGLWVIESLSETRSLFFSDGTARRIEFSLVL 73859 G SLD +R+MADTG AW +VEGTGR+YGLWVIE ++ETR+LFF+DGT RRIEFSL L Sbjct: 61 AGSALSLDVLRQMADTGSAWPMVEGTGRIYGLWVIERVTETRTLFFADGTPRRIEFSLEL 120 Query: 73858 KRVDDDRIDLLGTLVSTAAN 73799 KR+DD R DLLG+++ TA N Sbjct: 121 KRIDDGRTDLLGSVLGTAGN 140 >ref|NP_758937.1|ORF46 Length = 293 Score = 195 bits (496), Expect = 5e-49 Identities = 110/272 (40%), Positives = 153/272 (56%), Gaps = 1/272 (0%) Frame = -1 Query: 73757 PICRVVVDGRDITAAISPRLIAISLTDNRGLEADTLDIQLSDHDGLLAIPPRGATVRLWL 73578 P RV D RDIT+ I+ RLI +++TD G ++D L I + D DG+LA+P +GA + + L Sbjct: 3 PQFRVFADDRDITSRIAERLIEMTITDEAGFQSDALTISVDDADGVLAVPRKGARLAVHL 62 Query: 73577 GWSDSGLVDKGSYTVDETEHSGAPDVLSIRARSADLREGLKTKRERSWDQKALGDVIKAI 73398 G+ ++GL G + VDE E SG PD + IRAR ADLR+ LKT + RSWD+ + D+++A+ Sbjct: 63 GYEETGLAYMGEFVVDEPELSGPPDKIVIRARGADLRQELKTSKTRSWDKVTIDDIVRAV 122 Query: 73397 ATSNGLTAVIAPGLAQIPLAHLDQANESDANLLARLGEQHDAIATVKAGRLLFMSAGKSA 73218 A + L +A LA + H+DQ ESD + L RL +++DAI+ LLF Sbjct: 123 AGEHNLQPKVAEQLAATFIEHIDQTGESDLHFLTRLAKEYDAISKPAGPNLLFAPRNLGK 182 Query: 73217 TASGLPLPHITLTRADGDQHRFLQADRDSYSGVRAYYYDVNSAEKKEAIAGEKDNL-KDL 73041 T SG LP I L ++D +R + ADR V AY+ D A + G+K K L Sbjct: 183 TVSGKDLPPIVLAKSDVTTYRLVLADRSDIGHVVAYWQDKAKARRTGETVGDKTKPGKTL 242 Query: 73040 RHVYTDQTSALNAARGEWSRLQRGTATLSYTL 72945 R Y A AA E + LQRG L TL Sbjct: 243 RKTYPTAEEARAAAASELASLQRGRKNLDITL 274 >ref|NP_490633.1|hypothetical protein Length = 156 Score = 191 bits (484), Expect = 1e-47 Identities = 95/155 (61%), Positives = 119/155 (76%) Frame = -3 Query: 67305 LKRTLLETRRQVASAIVCGYPGGRECAAARLGMPLKKFDNHLYESKGSRPLSDEQLHLLE 67126 +KR LLETRRQV SAI+ YPGGRECAAARLG+ LKKFDNH YE+ GS+PLSD+QL LLE Sbjct: 1 MKRPLLETRRQVVSAIIGAYPGGRECAAARLGLDLKKFDNHAYENAGSKPLSDDQLLLLE 60 Query: 67125 AESGTTYLPDYMAAMYGGVFVPIADPSELDNLDLYSRSVKTAVKRGRVDQIIAEALEDGV 66946 E+GT++ P+Y+A +YGG+FV + +P++LDNLDLY+R V TA++RG VD+IIAEAL DG Sbjct: 61 QETGTSHFPEYVAHLYGGMFVQMPEPTQLDNLDLYARGVATAIRRGEVDRIIAEALRDGE 120 Query: 66945 IDEREVETILXXXXXXXXXXXAEVHAVIVLHSEVR 66841 IDE E+ I+ AEV AVI LH V+ Sbjct: 121 IDEAELAEIIVAHRQHLAARHAEVGAVITLHRRVK 155 >ref|NP_958077.1|gp22 Length = 172 Score = 174 bits (441), Expect = 1e-42 Identities = 84/148 (56%), Positives = 111/148 (75%), Gaps = 1/148 (0%) Frame = -2 Query: 78388 TITLPPLARKMESYRGGGMNGPVKVDQGMSDDGIQLEWTLGGL-DLVVLRQFGATTADAV 78212 ++TLP L RK+E+YRGGGMNG +D G+ DD + +EW++GGL D+ + Q+ A ADAV Sbjct: 25 SVTLPKLTRKLENYRGGGMNGAAAIDLGLDDDALTVEWSVGGLPDVALWAQYAAPGADAV 84 Query: 78211 LLRFAGSYQRDDTAEISAVEVVVRGRHEEINLGDAEPGEDTEVSIVTTCSYYKLIVDGNT 78032 LRFAGSYQRDDT EI AVEVV+RGRH+EI+ G+ + GE+T + T C+YY+L +DG+ Sbjct: 85 PLRFAGSYQRDDTGEIVAVEVVMRGRHKEIDGGENKQGENTSTKLSTVCTYYRLTIDGSD 144 Query: 78031 EIEIDLLNMIEIVNGVDMLAAQRAAIGM 77948 IEID +NM+E VNGVD L R AIG+ Sbjct: 145 VIEIDTVNMVEKVNGVDRLEQHRRAIGL 172 >ref|NP_052270.1|similar to P2 tail tube protein FII, Swiss-Prot Accession Number P22502 Length = 173 Score = 174 bits (440), Expect = 1e-42 Identities = 84/148 (56%), Positives = 111/148 (75%), Gaps = 1/148 (0%) Frame = -2 Query: 78388 TITLPPLARKMESYRGGGMNGPVKVDQGMSDDGIQLEWTLGGL-DLVVLRQFGATTADAV 78212 ++TLP L RK+E+YRGGGMNG +D G+ DD + +EW++GGL D+ + Q+ A ADAV Sbjct: 25 SVTLPKLTRKLENYRGGGMNGAAAIDLGLDDDALTVEWSVGGLPDVALWAQYAAPGADAV 84 Query: 78211 LLRFAGSYQRDDTAEISAVEVVVRGRHEEINLGDAEPGEDTEVSIVTTCSYYKLIVDGNT 78032 LRFAGSYQRDDT EI AVEVV+RGRH+EI+ G+ + GE+T + T C+YY+L +DG+ Sbjct: 85 PLRFAGSYQRDDTGEIVAVEVVMRGRHKEIDGGENKQGENTSTKLSTVCTYYRLTIDGSD 144 Query: 78031 EIEIDLLNMIEIVNGVDMLAAQRAAIGM 77948 IEID +NM+E VNGVD L R AIG+ Sbjct: 145 IIEIDTVNMVEKVNGVDRLEQHRRAIGL 172 >ref|NP_839871.1|FII Length = 172 Score = 170 bits (430), Expect = 2e-41 Identities = 82/150 (54%), Positives = 108/150 (72%), Gaps = 1/150 (0%) Frame = -2 Query: 78394 ARTITLPPLARKMESYRGGGMNGPVKVDQGMSDDGIQLEWTLGGL-DLVVLRQFGATTAD 78218 A+++TLP L RK+E+YRG GMNG VD G+ DD + +EW+LGG D V+ + AT+AD Sbjct: 23 AKSVTLPKLTRKLENYRGAGMNGSAPVDLGLDDDALSMEWSLGGFPDSVIWELYAATSAD 82 Query: 78217 AVLLRFAGSYQRDDTAEISAVEVVVRGRHEEINLGDAEPGEDTEVSIVTTCSYYKLIVDG 78038 AV +RFAGSYQRDDT E AVEVV+RGR +E++ G+ + GEDTE + C+Y+KL +DG Sbjct: 83 AVPIRFAGSYQRDDTGETVAVEVVMRGRQKEVDTGEGKQGEDTESKLPVICTYFKLTMDG 142 Query: 78037 NTEIEIDLLNMIEIVNGVDMLAAQRAAIGM 77948 +EID +NMIE VNGVD L R IG+ Sbjct: 143 KELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 >ref|NP_046779.1|gpFII Length = 172 Score = 167 bits (424), Expect = 1e-40 Identities = 82/150 (54%), Positives = 106/150 (70%), Gaps = 1/150 (0%) Frame = -2 Query: 78394 ARTITLPPLARKMESYRGGGMNGPVKVDQGMSDDGIQLEWTLGGL-DLVVLRQFGATTAD 78218 A+++TLP L RK+E+YRG GMNG VD G+ DD + +EW+LGG D V+ + AT D Sbjct: 23 AKSVTLPKLTRKLENYRGAGMNGSAPVDLGLDDDALSMEWSLGGFPDSVIWELYAATGVD 82 Query: 78217 AVLLRFAGSYQRDDTAEISAVEVVVRGRHEEINLGDAEPGEDTEVSIVTTCSYYKLIVDG 78038 AV +RFAGSYQRDDT E AVEVV+RGR +EI+ G+ + GEDTE I C+Y++L +DG Sbjct: 83 AVPIRFAGSYQRDDTGETVAVEVVMRGRQKEIDTGEGKQGEDTESKISVVCTYFRLTMDG 142 Query: 78037 NTEIEIDLLNMIEIVNGVDMLAAQRAAIGM 77948 +EID +NMIE VNGVD L R IG+ Sbjct: 143 KELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 >ref|NP_878221.1|gpFII Length = 172 Score = 167 bits (424), Expect = 1e-40 Identities = 82/150 (54%), Positives = 106/150 (70%), Gaps = 1/150 (0%) Frame = -2 Query: 78394 ARTITLPPLARKMESYRGGGMNGPVKVDQGMSDDGIQLEWTLGGL-DLVVLRQFGATTAD 78218 A+++TLP L RK+E+YRG GMNG VD G+ DD + +EW+LGG D V+ + AT D Sbjct: 23 AKSVTLPKLTRKLENYRGAGMNGSAPVDLGLDDDALSMEWSLGGFPDSVIWELYAATGVD 82 Query: 78217 AVLLRFAGSYQRDDTAEISAVEVVVRGRHEEINLGDAEPGEDTEVSIVTTCSYYKLIVDG 78038 AV +RFAGSYQRDDT E AVEVV+RGR +EI+ G+ + GEDTE I C+Y++L +DG Sbjct: 83 AVPIRFAGSYQRDDTGETVAVEVVMRGRQKEIDTGEGKQGEDTESKISVVCTYFRLTMDG 142 Query: 78037 NTEIEIDLLNMIEIVNGVDMLAAQRAAIGM 77948 +EID +NMIE VNGVD L R IG+ Sbjct: 143 KELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 >ref|NP_046783.1|gpU Length = 159 Score = 145 bits (365), Expect = 7e-34 Identities = 73/134 (54%), Positives = 98/134 (73%) Frame = -2 Query: 74218 MMMALGQFVFSLSTLAYQEFQRQTDWRHGSTSRIGVRPARQFLGPGDDSITLPGVLLPEL 74039 MM+ALG FVF TL +Q QR++D+R S SRIG R A QFLG G+++ITL GVL PEL Sbjct: 1 MMLALGMFVFMRQTLPHQTMQRESDYRWPSNSRIGKRDAFQFLGVGEENITLAGVLYPEL 60 Query: 74038 TGGIPSLDEVREMADTGRAWVLVEGTGRLYGLWVIESLSETRSLFFSDGTARRIEFSLVL 73859 TGG ++ +R MA+ GRAW L++GTG +YG++VI +SET S+FF+DGT R+I+F+L L Sbjct: 61 TGGKLTMTTLRLMAEEGRAWPLLDGTGMIYGMYVISRVSETGSIFFADGTPRKIDFTLSL 120 Query: 73858 KRVDDDRIDLLGTL 73817 RVD+ L G + Sbjct: 121 TRVDESLAALYGDI 134 >ref|NP_839875.1|gpU Length = 159 Score = 145 bits (365), Expect = 7e-34 Identities = 73/134 (54%), Positives = 98/134 (73%) Frame = -2 Query: 74218 MMMALGQFVFSLSTLAYQEFQRQTDWRHGSTSRIGVRPARQFLGPGDDSITLPGVLLPEL 74039 MM+ALG FVF TL +Q QR++D+R S SRIG R A QFLG G+++ITL GVL PEL Sbjct: 1 MMLALGMFVFMRQTLPHQTMQRESDYRWPSNSRIGKRDAFQFLGVGEENITLAGVLYPEL 60 Query: 74038 TGGIPSLDEVREMADTGRAWVLVEGTGRLYGLWVIESLSETRSLFFSDGTARRIEFSLVL 73859 TGG ++ +R MA+ GRAW L++GTG +YG++VI +SET S+FF+DGT R+I+F+L L Sbjct: 61 TGGKLTMTTLRLMAEEGRAWPLLDGTGMIYGMYVISRVSETGSIFFADGTPRKIDFTLSL 120 Query: 73858 KRVDDDRIDLLGTL 73817 RVD+ L G + Sbjct: 121 TRVDESLAALYGDI 134 >ref|NP_878225.1|gpU Length = 159 Score = 144 bits (362), Expect = 2e-33 Identities = 72/134 (53%), Positives = 98/134 (73%) Frame = -2 Query: 74218 MMMALGQFVFSLSTLAYQEFQRQTDWRHGSTSRIGVRPARQFLGPGDDSITLPGVLLPEL 74039 MM+ALG FVF TL +Q QR++D+R S SRIG R A QFLG G++++TL GVL PEL Sbjct: 1 MMLALGMFVFMRQTLPHQTMQRESDYRWPSNSRIGKRDAFQFLGVGEENMTLAGVLYPEL 60 Query: 74038 TGGIPSLDEVREMADTGRAWVLVEGTGRLYGLWVIESLSETRSLFFSDGTARRIEFSLVL 73859 TGG ++ +R MA+ GRAW L++GTG +YG++VI +SET S+FF+DGT R+I+F+L L Sbjct: 61 TGGKLTMTTLRLMAEEGRAWPLLDGTGMIYGMYVISRVSETGSIFFADGTPRKIDFTLSL 120 Query: 73858 KRVDDDRIDLLGTL 73817 RVD+ L G + Sbjct: 121 TRVDESLAALYGDI 134 >ref|NP_958081.1|gp25 Length = 161 Score = 141 bits (355), Expect = 1e-32 Identities = 72/139 (51%), Positives = 92/139 (66%) Frame = -2 Query: 74218 MMMALGQFVFSLSTLAYQEFQRQTDWRHGSTSRIGVRPARQFLGPGDDSITLPGVLLPEL 74039 MM+ALG FVF L TL YQ Q D+R S R+G PA QFLG G+ SI L G L P + Sbjct: 1 MMLALGMFVFELRTLPYQSMQHSKDYRWASNDRVGKPPAYQFLGEGETSIQLAGTLYPAI 60 Query: 74038 TGGIPSLDEVREMADTGRAWVLVEGTGRLYGLWVIESLSETRSLFFSDGTARRIEFSLVL 73859 TGG SL V MAD GRAW L+EGTG++ G+++I+ +S T + FFSDG AR+I+F+L L Sbjct: 61 TGGHISLLAVELMADEGRAWPLIEGTGKILGMYIIDKVSTTHAEFFSDGAARKIDFTLSL 120 Query: 73858 KRVDDDRIDLLGTLVSTAA 73802 KRVD+ + G L A+ Sbjct: 121 KRVDESLTAMFGDLNKQAS 139 >ref|NP_052274.1|F protein Length = 161 Score = 137 bits (345), Expect = 2e-31 Identities = 69/139 (49%), Positives = 90/139 (64%) Frame = -2 Query: 74218 MMMALGQFVFSLSTLAYQEFQRQTDWRHGSTSRIGVRPARQFLGPGDDSITLPGVLLPEL 74039 MM+ALG FVF TL YQ Q D+R S R+G PA QFLG G+ SI L G L P + Sbjct: 1 MMLALGMFVFERRTLPYQSMQHSKDYRWASNDRVGKPPAYQFLGEGETSIQLAGTLYPAI 60 Query: 74038 TGGIPSLDEVREMADTGRAWVLVEGTGRLYGLWVIESLSETRSLFFSDGTARRIEFSLVL 73859 TGG SL V MA+ GRAW L+EGTG + G+++++ +S T + FFSDG AR+I+F+L L Sbjct: 61 TGGWISLKAVEVMANEGRAWPLIEGTGNILGMYIVDKVSTTHAEFFSDGAARKIDFTLSL 120 Query: 73858 KRVDDDRIDLLGTLVSTAA 73802 KRVD+ + G L A+ Sbjct: 121 KRVDESLTAMFGDLNKQAS 139 >ref|NP_859325.1|hypothetical protein Length = 209 Score = 120 bits (302), Expect = 1e-26 Identities = 61/112 (54%), Positives = 75/112 (66%), Gaps = 2/112 (1%) Frame = -2 Query: 66325 MTQQLIPVFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSVLS 66146 MT QLIPVFNG + L +A++LH FL V RF WI RIE+YGF+E +D+ ++ Sbjct: 1 MTSQLIPVFNGTIANETTLLVNARDLHTFLGVGKRFASWITERIEEYGFVENQDYIAISQ 60 Query: 66145 KS--AGGRPSQDYHLTLDMAKELAMVENNEKGRQIRRYFIAMEREARESRGA 65996 K GR +DYHLTLD AKE AMVE NEKGRQIRRYFI E++ R + A Sbjct: 61 KREIGYGRGKKDYHLTLDTAKETAMVERNEKGRQIRRYFIECEKKLRNMQSA 112 >ref|NP_859159.1|hypothetical protein Length = 209 Score = 120 bits (302), Expect = 1e-26 Identities = 61/112 (54%), Positives = 75/112 (66%), Gaps = 2/112 (1%) Frame = -2 Query: 66325 MTQQLIPVFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSVLS 66146 MT QLIPVFNG + L +A++LH FL V RF WI RIE+YGF+E +D+ ++ Sbjct: 1 MTSQLIPVFNGTIANETTLLVNARDLHTFLGVGKRFASWITERIEEYGFVENQDYIAISQ 60 Query: 66145 KS--AGGRPSQDYHLTLDMAKELAMVENNEKGRQIRRYFIAMEREARESRGA 65996 K GR +DYHLTLD AKE AMVE NEKGRQIRRYFI E++ R + A Sbjct: 61 KREIGYGRGKKDYHLTLDTAKETAMVERNEKGRQIRRYFIECEKKLRNMQSA 112 >ref|NP_050579.1|hypothetical protein Length = 209 Score = 120 bits (302), Expect = 1e-26 Identities = 61/112 (54%), Positives = 75/112 (66%), Gaps = 2/112 (1%) Frame = -2 Query: 66325 MTQQLIPVFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSVLS 66146 MT QLIPVFNG + L +A++LH FL V RF WI RIE+YGF+E +D+ ++ Sbjct: 1 MTSQLIPVFNGTIANETTLLVNARDLHTFLGVGKRFASWITERIEEYGFVENQDYIAISQ 60 Query: 66145 KS--AGGRPSQDYHLTLDMAKELAMVENNEKGRQIRRYFIAMEREARESRGA 65996 K GR +DYHLTLD AKE AMVE NEKGRQIRRYFI E++ R + A Sbjct: 61 KREIGYGRGKKDYHLTLDTAKETAMVERNEKGRQIRRYFIECEKKLRNMQSA 112 >ref|NP_612957.1|hypothetical protein Length = 209 Score = 118 bits (296), Expect = 7e-26 Identities = 60/112 (53%), Positives = 74/112 (66%), Gaps = 2/112 (1%) Frame = -2 Query: 66325 MTQQLIPVFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSVLS 66146 MT Q IPVFNG + L +A++LH FL V RF WI RIE+YGF+E +D+ ++ Sbjct: 1 MTSQRIPVFNGTIANETTLLVNARDLHTFLGVGKRFASWITERIEEYGFVENQDYIAISQ 60 Query: 66145 KS--AGGRPSQDYHLTLDMAKELAMVENNEKGRQIRRYFIAMEREARESRGA 65996 K GR +DYHLTLD AKE AMVE NEKGRQIRRYFI E++ R + A Sbjct: 61 KREIGYGRGKKDYHLTLDTAKETAMVERNEKGRQIRRYFIECEKKLRNMQSA 112 >ref|NP_049540.1|hypothetical protein Length = 209 Score = 118 bits (296), Expect = 7e-26 Identities = 60/112 (53%), Positives = 74/112 (66%), Gaps = 2/112 (1%) Frame = -2 Query: 66325 MTQQLIPVFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSVLS 66146 MT Q IPVFNG + L +A++LH FL V RF WI RIE+YGF+E +D+ ++ Sbjct: 1 MTSQRIPVFNGTIANETTLLVNARDLHTFLGVGKRFASWITERIEEYGFVENQDYIAISQ 60 Query: 66145 KS--AGGRPSQDYHLTLDMAKELAMVENNEKGRQIRRYFIAMEREARESRGA 65996 K GR +DYHLTLD AKE AMVE NEKGRQIRRYFI E++ R + A Sbjct: 61 KREIGYGRGKKDYHLTLDTAKETAMVERNEKGRQIRRYFIECEKKLRNMQSA 112 >ref|NP_758934.1|ORF43 Length = 1023 Score = 114 bits (285), Expect = 1e-24 Identities = 140/662 (21%), Positives = 258/662 (38%), Gaps = 23/662 (3%) Frame = -2 Query: 77458 ARDLSLQVRLSAIDRITAPLRRIVQGSGALAQAMKASQDQLKALNQQQRDLSGYRQTNVE 77279 +++++L V+L AID+++APL+ + SG + +++K +Q++LKA++ Q + +R E Sbjct: 3 SKNMNLAVKLQAIDKMSAPLKNVAGASGQVIESLKKTQERLKAIDSQTDQFNAFR----E 58 Query: 77278 IARQTKAIQALQARTREHTQLLEKQ----RAVHVNLKGNLKAAQTQYNKLAKALIEGKGE 77111 + +Q++ A ++ + Q L Q LK L AA+ Q +LA+ + + Sbjct: 59 LLKQSRDTAAGVSQAKGEVQRLAIQIKDSEGPTKRLKVELAAAERQVAELAQEMKAAEQP 118 Query: 77110 TASFHFELEKAQIKLQSAQQAFNRSSSTIKTYKDRIRQADSQLAQLGSQQQNSQERLAGY 76931 + ++AQ + Q F + K+ +A SQ+ QL ++L Sbjct: 119 NDLLTYRFKQAQKEANKLGQEFRKVERDNKSLNKEFERAKSQVNQLEQAHLQETQKLQEM 178 Query: 76930 KRRLDEAGIGTERLGSRARQLRGEQERLNAVLEAQKARLAAVTAQQERLTKAQKSYERXX 76751 ++ L+ AG+ T+ L + + E +LN + Q +L + + R+ K+++ ++ Sbjct: 179 RQALNRAGVSTKDLAGAQSKAKQEASQLNQEFDRQAKKLERIAEIEARVAKSKERLQKSM 238 Query: 76750 XXXXXXXXXXXXXXANGYALSRPLSXXXXXXXXXXXXXAQLRASMMGADGSVSADFEKIS 76571 G ++ L + + A D ++ +++ Sbjct: 239 QVSANMTVAAFGVQQTGQVITNTLMGPVNVAADFEEKMSGVGAVANATDQQLA----QLT 294 Query: 76570 ALATRLGDRLPGTTAQFQEMMTMLRRQGISAQSILGG-TGEAAAYLAVQLKMGSSEAAEF 76394 A A +LG + +Q + M L G I+ G A + + A++ Sbjct: 295 ATARKLGAETSFSASQSADGMKYLAMAGFKTNQIIASMPGLLDLAKATGMDEDLAGASDI 354 Query: 76393 AAKMQDSTRTTEADMMGLMDTIQRTFYLGVDPTNMLQGFASISPALSMIRKSG--LEAAN 76220 A+ + S M L D + +T T++ Q ++ + RK+G L+ A+ Sbjct: 355 ASDILSSFEMLPEQMGQLSDVLAKT--TTTANTDLRQLGETMKYVGPVARKAGMDLQEAS 412 Query: 76219 TLAPLLVMMDQAGMSGESAGNALRNVFQSGFKTDKVAKANKMLKKLGISL---------- 76070 +A LL G+ G AG LR++ + A K L++LG+S Sbjct: 413 AMAGLL---SNVGIKGSQAGTTLRSMVLN--LAAPTGAAAKTLERLGVSTRDASGNVRNM 467 Query: 76069 -----DFTDGKGEFGGLEKLFAXXXXXXXXXXXXXTAVI-SEIFGDDSQNLQVLNTLIDK 75908 D G E+L A +I E G ++ LQVL T Sbjct: 468 VEILGDVAKATENMGSAEQLEALVDIMGKEPAAGFQELIGQEGAGGVTKYLQVLRT---- 523 Query: 75907 GLDGYREVEAKMKAQADLRKRVDDQLKTLTNVIDAAQGSWTNAMAEFGAAVAPELKGLIQ 75728 DG A + A + +LK L++ ++ Q S G + P +K Sbjct: 524 -ADG-----AAAQIAAKMGDNARGKLKELSSAAESLQIS-------LGNILLPVVKDFAV 570 Query: 75727 WLGNVASGIGAWARENPQLAGTLVKVTXXXXXXXXXXXXXXXXXXXXXGPFAMAKLGLSV 75548 W NV I AWA +P L L+ V AM + G++ Sbjct: 571 WATNVTRRIEAWANAHPGLTKGLIFVAAAVGALALAGAPLLLAMASINSMMAMTRYGMTA 630 Query: 75547 FG 75542 FG Sbjct: 631 FG 632 Score = 48.5 bits (114), Expect = 9e-05 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Frame = -2 Query: 75082 ALLLNPIGLTISA----LALAGMALLKYWQPVKAXXXXXXXXXXXGLEXXXXXXXXXXXX 74915 A+L NPI I+A +A+ G+ + KY++P+KA ++ Sbjct: 655 AILANPITWIIAAVVALIAVLGVLVYKYFEPLKA---FLSGFWDGFIQGFAPVIQSCSGL 711 Query: 74914 XXXLKPLWDGIA---GAMSAAWQWVSRLFAPFQATATELQNATSRGQAFGLWLAGLVNSL 74744 L P+ D + + A + W RLF P A+A LQ ATS G +FG ++ +N L Sbjct: 712 FAALSPIGDALGWVWNGVKAVFDWFGRLFQPVNASAESLQAATSAGTSFGQFVGAALNIL 771 >ref|NP_852738.1|putative antirepressor protein AntB Length = 239 Score = 114 bits (284), Expect = 2e-24 Identities = 53/106 (50%), Positives = 77/106 (72%), Gaps = 3/106 (2%) Frame = -2 Query: 66313 LIPVFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSVLSKS-- 66140 LI + N +++ + +A+ELH+FLEV TRF+DWI RRI +Y F+E +DF +L Sbjct: 4 LIQISNSKINNSEVKTVNARELHSFLEVSTRFSDWIQRRISEYEFVENQDFVVLLKNEKN 63 Query: 66139 -AGGRPSQDYHLTLDMAKELAMVENNEKGRQIRRYFIAMEREARES 66005 GGRPS++ H+++DMAKEL+MVE NEKG+Q R+YFI ME+ A+ + Sbjct: 64 PVGGRPSREIHISIDMAKELSMVERNEKGKQARQYFIEMEKVAKST 109 >ref|NP_490625.1|hypothetical protein Length = 904 Score = 111 bits (277), Expect = 1e-23 Identities = 143/604 (23%), Positives = 222/604 (36%), Gaps = 2/604 (0%) Frame = -2 Query: 77461 MARDLSLQVRLSAIDRITAPLRRIVQGSGALAQAMKASQDQLKALNQQQRDLSGYRQTNV 77282 MA DL L+V LSAIDR TAPLRRI+QGS A A+A+KA++++LK LN QQ D+ +R Sbjct: 1 MANDLQLRVLLSAIDRATAPLRRIMQGSDATARALKATRERLKQLNAQQSDVRAFRTQRG 60 Query: 77281 EIARQTKAIQALQARTREHTQLLEKQRAVHVNLKGNLKAAQTQYNKLAKALIEGKGETAS 77102 + + + A+ A QAR + L +Q A Sbjct: 61 ALEQVSTALAAQQARVK----ALAQQMAA------------------------------- 85 Query: 77101 FHFELEKAQIKLQSAQQAFNRSSSTIKTYKDRIRQADSQLAQLGSQQQNSQERLAGYKRR 76922 A N + + + Y IR+A L Q L + R Sbjct: 86 -----------------AGNPTRALTRDYNRAIREA----GFLKQQHLQHSHALQQLRTR 124 Query: 76921 LDEAGIGTERLGSRARQLRGEQERLNAVLEAQKARLAAVTAQQERLTKAQKSYERXXXXX 76742 L AGI T LG R LR + + N + +Q RL ++ QQERLT+A+ +Y R Sbjct: 125 LSNAGISTRNLGQHERDLRAQIQAANGAINSQAQRLRNLSQQQERLTQARNTYSRGIQSA 184 Query: 76741 XXXXXXXXXXXANGYALSRPLSXXXXXXXXXXXXXAQLRASMMGADGSVSADFEKISALA 76562 A G L + +A + + + + A Sbjct: 185 AALAGTGMAARATGMYTGDKLRQMLGVGYEFDATMSATQA-VTRIERKDDPQMQALRQQA 243 Query: 76561 TRLGDRLPGTTAQFQEMMTMLRRQGISAQSILGGTGEAAAYLAVQLKMGSSEAAEFAAKM 76382 L T + + L R G +A+ ILG LA M + A+ A+ + Sbjct: 244 RTLPLSSKFTDKEVAQGQYFLGRTGYNAKQILGAM-PGMLNLAAAGDMDLGDTADIASNI 302 Query: 76381 QDSTRTTEADMMGLMDTIQRTFYLGVDPTNMLQGFASISPALSMIRKSGLEAANTLAPLL 76202 Q + M + D + F ML S + LE T LL Sbjct: 303 QTAMGIPAEKMDQVADVLTAAFTRNNVDIRMLGDSLKYSAGVGREYGQSLETVTTATALL 362 Query: 76201 VMMDQAGMSGESAGNALRNVFQSGFKTDKVAKANKMLKKLGISLDFTDGKGEFGGLEKLF 76022 AG+ G AG ++R+V +K + KLG+ +G L+ L Sbjct: 363 ---GNAGVQGSMAGTSMRSVLTR-------LGTSKAVAKLGVQTKDANGNMR-DMLDILK 411 Query: 76021 AXXXXXXXXXXXXXTAVISEIFGDDSQNLQVLNTLIDKGLDGYREV--EAKMKAQADLRK 75848 A+ +I G + + TL+ G + E+ ++ + + Sbjct: 412 DINKKTAGMGNVQRGAIFKDIAGQYA--VTSFGTLMRAVEGGQFQTMRESLNNSEGEAAR 469 Query: 75847 RVDDQLKTLTNVIDAAQGSWTNAMAEFGAAVAPELKGLIQWLGNVASGIGAWARENPQLA 75668 QL L + + N E +P L+ L L ++ IG + + NPQ++ Sbjct: 470 VAATQLDNLKGDMTMLHAALENISVELFDKNSPWLRELAADLSHLLHNIGEFLKANPQVS 529 Query: 75667 GTLV 75656 +V Sbjct: 530 KGIV 533 Score = 69.3 bits (168), Expect = 5e-11 Identities = 34/64 (53%), Positives = 49/64 (76%) Frame = -2 Query: 74419 IDNRPPLAAGGAAPIVVQGDTITINLQVGAGGNPADLAQQINRILDERERAKAARVRSRL 74240 IDNRPP+++ AA + + GDT I +Q GAG + ADL + ++++LDERER KAAR+R+RL Sbjct: 842 IDNRPPVSSAPAA-VSIGGDTYYITIQAGAGSDTADLKRTLSQLLDERERNKAARLRARL 900 Query: 74239 HDQE 74228 D+E Sbjct: 901 QDRE 904 >ref|NP_817764.1|gp3 Length = 235 Score = 109 bits (272), Expect = 4e-23 Identities = 79/225 (35%), Positives = 108/225 (48%), Gaps = 5/225 (2%) Frame = -3 Query: 10215 KKAVILLSGGLDSATVAALA--KTEGYACYSMSFDYGXXXXXXXXXXXXXXXXLGMVEHK 10042 + ++LLSGG+DS+T+ A A + + ++ DYG G + Sbjct: 5 RSPLVLLSGGMDSSTLLAWALDRPDVDQASALFVDYGQRHVVERASSQLVAQHYGAAWSE 64 Query: 10041 VIGLDLGGIGGSALTDPAIAVPESPC--EGIPVTYVPARNTVFLALALGWAEVLGARDIF 9868 + G SALT A VP + + T VP RN ++ A G A LG + Sbjct: 65 LDLRAFGASVNSALTVMAREVPHGHYAEDNMVQTVVPNRNATLISAAAGIAASLGHDAVL 124 Query: 9867 IGVNAVDYSGYPDCRPAFIEAFERMANLATKAGVEGQGFRIRAPLQNLGKDEIIRAGLRH 9688 V+ D++ YPDCRP F+ A + +AT AG G + AP Q K +I R G + Sbjct: 125 TAVHVGDHAVYPDCRPEFVAAID----MATFAGC---GVHVVAPFQTGDKADIARLGGQL 177 Query: 9687 GVDYGLTVSCYQAD-EEGRACGRCDSCRLRAAGFATAGVTDPTRY 9556 GV Y LT SCY+ + R CGRC +C RA FA AGV DPT Y Sbjct: 178 GVPYHLTWSCYEGGLNDARHCGRCGTCVERAEAFAEAGVPDPTEY 222 >ref|NP_463507.1|putative anti-repressor promoter Length = 262 Score = 103 bits (256), Expect = 3e-21 Identities = 52/109 (47%), Positives = 73/109 (66%), Gaps = 3/109 (2%) Frame = -2 Query: 66325 MTQQLIPVFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSVLS 66146 + +++PV E + ++ +A+ LH L T+F DWI RRI QYGF+E EDF+S+L Sbjct: 7 IANEMLPVLENE---KGEKFVNARTLHEKLMTTTKFADWIKRRIRQYGFVENEDFFSLLK 63 Query: 66145 ---KSAGGRPSQDYHLTLDMAKELAMVENNEKGRQIRRYFIAMEREARE 66008 ++ GG S DY TLD KELAMVEN E+GR IR+YFI +E++AR+ Sbjct: 64 NEKRAIGGTTSIDYIFTLDSGKELAMVENTEQGRAIRKYFIEVEKQARK 112 >ref|NP_839894.1|putative antirepressor Length = 238 Score = 94.4 bits (233), Expect = 1e-18 Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 3/106 (2%) Frame = -2 Query: 66316 QLIPVFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSVLSKSA 66137 QLI + E N+Q+ +ELH FL V+TR+NDW ++ YGF E DF K Sbjct: 3 QLITITQNE---NNEQVVSGRELHQFLGVKTRYNDWFEDMVK-YGFTENVDFIGFTEKRV 58 Query: 66136 ---GGRPSQDYHLTLDMAKELAMVENNEKGRQIRRYFIAMEREARE 66008 GGRPS D+ L LDMAKE++M++ NEKG+Q R+YFI +E+E ++ Sbjct: 59 KPQGGRPSVDHALKLDMAKEISMIQRNEKGKQARQYFIEVEKELKQ 104 >ref|NP_663641.1|putative anti-repressor Length = 238 Score = 94.4 bits (233), Expect = 1e-18 Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 3/106 (2%) Frame = -2 Query: 66316 QLIPVFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSVLSKSA 66137 QLI + E N+Q+ +ELH FL V+TR+NDW ++ YGF E DF K Sbjct: 3 QLITITQNE---NNEQVVSGRELHQFLGVKTRYNDWFEDMVK-YGFTENVDFIGFTEKRV 58 Query: 66136 ---GGRPSQDYHLTLDMAKELAMVENNEKGRQIRRYFIAMEREARE 66008 GGRPS D+ L LDMAKE++M++ NEKG+Q R+YFI +E+E ++ Sbjct: 59 KPQGGRPSVDHALKLDMAKEISMIQRNEKGKQARQYFIEVEKELKQ 104 >ref|NP_108684.1|major structural protein Length = 238 Score = 93.6 bits (231), Expect = 3e-18 Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 3/106 (2%) Frame = -2 Query: 66316 QLIPVFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSVLSKSA 66137 QLI + E N Q+ +ELH FL V+TR+NDW ++ YGF E DF K Sbjct: 3 QLITITQNE---NNDQVVSGRELHEFLGVKTRYNDWFEDMVK-YGFTENVDFIGFTEKRV 58 Query: 66136 ---GGRPSQDYHLTLDMAKELAMVENNEKGRQIRRYFIAMEREARE 66008 GGRPS D+ L LDMAKE++M++ NEKG+Q R+YFI +E+E ++ Sbjct: 59 KPQGGRPSVDHALKLDMAKEISMIQRNEKGKQARQYFIEVEKELKQ 104 >ref|NP_899372.1|exsB protein Length = 238 Score = 92.8 bits (229), Expect = 4e-18 Identities = 66/231 (28%), Positives = 105/231 (45%), Gaps = 12/231 (5%) Frame = -3 Query: 10212 KAVILLSGGLDSATVAALAKTEGYA---CYSMSFDYGXXXXXXXXXXXXXXXXLGMVEHK 10042 K V +LSGGLDS T+ + + +++SF YG LG +EH+ Sbjct: 2 KVVSVLSGGLDS-TILTYKLVDEFGKDNVFALSFYYGQKQSIELEKAKLTCQKLG-IEHR 59 Query: 10041 VIGLDLGG---------IGGSALTDPAIAVPESPCEGIPVTYVPARNTVFLALALGWAEV 9889 +I + G I GS + P I + + P T VP RN + +A +A+ Sbjct: 60 LIDISFLGEVVAPVCANIAGSDVAMPTIQ--DVLGDPQPPTEVPYRNMLLNTIAFSFAQA 117 Query: 9888 LGARDIFIGVNAVDYSGYPDCRPAFIEAFERMANLATKAGVEGQGFRIRAPLQNLGKDEI 9709 G +F G+ D GY DC F++ +++ L + + + AP + K + Sbjct: 118 NGCSAVFTGIQVHDAYGYWDCTQDFLDGMNKISALNRQHEIT-----LHAPFAQMSKADE 172 Query: 9708 IRAGLRHGVDYGLTVSCYQADEEGRACGRCDSCRLRAAGFATAGVTDPTRY 9556 I G+ GV + +++CY +E G +CG+C SC R F AG+ DP Y Sbjct: 173 IAIGVELGVPFEDSLTCYDPNEAGESCGKCPSCAERIMNFGKAGIVDPAPY 223 >ref|NP_758935.1|ORF44 Length = 173 Score = 92.0 bits (227), Expect = 7e-18 Identities = 51/142 (35%), Positives = 75/142 (52%) Frame = -2 Query: 74284 DERERAKAARVRSRLHDQE*PSMMMALGQFVFSLSTLAYQEFQRQTDWRHGSTSRIGVRP 74105 D+ E L + S M+ALGQ+ FS+ T AYQ F R+ + + R G Sbjct: 18 DQAEALARDLANQTLPTERAASYMLALGQYRFSVDTAAYQAFTRELSFLWPTQQRFGNMA 77 Query: 74104 ARQFLGPGDDSITLPGVLLPELTGGIPSLDEVREMADTGRAWVLVEGTGRLYGLWVIESL 73925 A QF+G G+ +L GV+ PE GG+ +D + A G+ LV G G + G W I S+ Sbjct: 78 APQFVGRGEFKRSLNGVIYPEYKGGLRQVDAMAAQAGLGQPLQLVSGIGEVLGFWCITSI 137 Query: 73924 SETRSLFFSDGTARRIEFSLVL 73859 E ++F +G AR+++FSL L Sbjct: 138 RENATVFHRNGQARKLDFSLEL 159 >ref|NP_490623.1|hypothetical protein Length = 108 Score = 90.9 bits (224), Expect = 2e-17 Identities = 45/83 (54%), Positives = 58/83 (69%) Frame = -2 Query: 77860 LDTPIQRGEQIITSVELRKPDAGSLRGVSLTDVLRMDVNALITVLPRISTPALTQPELMR 77681 LD PI+RG Q I S+ LRKP +G LRG+ L D+L+ DV A I +LPRIS P +T+PE Sbjct: 20 LDQPIKRGAQSIESLTLRKPSSGELRGLHLLDLLQFDVAATIKILPRISQPTITEPEATG 79 Query: 77680 LDPADLVQLGSEVAAFLLPKSAQ 77612 +DPADL+ G +A FLL K A+ Sbjct: 80 MDPADLLACGQVIAGFLLQKRAK 102 >ref|NP_878223.1|gpE Length = 91 Score = 86.7 bits (213), Expect = 3e-16 Identities = 44/83 (53%), Positives = 57/83 (68%) Frame = -2 Query: 77860 LDTPIQRGEQIITSVELRKPDAGSLRGVSLTDVLRMDVNALITVLPRISTPALTQPELMR 77681 LD P++RGEQ+I V L KP+AG+LRGVSL V +V+ALI VLPR++ P LT+ E+ Sbjct: 9 LDNPVKRGEQVIEQVTLMKPNAGTLRGVSLAAVANSEVDALIKVLPRMTAPMLTEQEVAA 68 Query: 77680 LDPADLVQLGSEVAAFLLPKSAQ 77612 L+ DLV L +V FL P S Q Sbjct: 69 LELPDLVALAGKVVGFLSPNSVQ 91 >ref|NP_839873.1|gpE Length = 91 Score = 86.7 bits (213), Expect = 3e-16 Identities = 44/83 (53%), Positives = 57/83 (68%) Frame = -2 Query: 77860 LDTPIQRGEQIITSVELRKPDAGSLRGVSLTDVLRMDVNALITVLPRISTPALTQPELMR 77681 LD P++RGEQ+I V L KP+AG+LRGVSL V +V+ALI VLPR++ P LT+ E+ Sbjct: 9 LDNPVKRGEQVIEQVTLMKPNAGTLRGVSLAAVANSEVDALIKVLPRMTAPMLTEQEVAA 68 Query: 77680 LDPADLVQLGSEVAAFLLPKSAQ 77612 L+ DLV L +V FL P S Q Sbjct: 69 LELPDLVALAGKVVGFLSPNSVQ 91 >ref|NP_046781.1|gpE Length = 91 Score = 86.3 bits (212), Expect = 4e-16 Identities = 44/83 (53%), Positives = 56/83 (67%) Frame = -2 Query: 77860 LDTPIQRGEQIITSVELRKPDAGSLRGVSLTDVLRMDVNALITVLPRISTPALTQPELMR 77681 LD P++RGEQ+I V L KP AG+LRGVSL V +V+ALI VLPR++ P LT+ E+ Sbjct: 9 LDNPVKRGEQVIEQVTLMKPSAGTLRGVSLAAVANSEVDALIKVLPRMTAPMLTEQEVAA 68 Query: 77680 LDPADLVQLGSEVAAFLLPKSAQ 77612 L+ DLV L +V FL P S Q Sbjct: 69 LELPDLVALAGKVVGFLSPNSVQ 91 >ref|NP_839872.1|gpE+E' Length = 142 Score = 82.8 bits (203), Expect = 4e-15 Identities = 45/93 (48%), Positives = 60/93 (64%), Gaps = 8/93 (8%) Frame = -2 Query: 77860 LDTPIQRGEQIITSVELRKPDAGSLRGVSLTDVLRMDVNALITVLPRISTPALTQPELMR 77681 LD P++RGEQ+I V L KP+AG+LRGVSL V +V+ALI VLPR++ P LT+ E+ Sbjct: 9 LDNPVKRGEQVIEQVTLMKPNAGTLRGVSLAAVANSEVDALIKVLPRMTAPMLTEQEVAA 68 Query: 77680 LDPADLVQLGSEVAAFLL--------PKSAQVD 77606 L+ DLV L +V FL+ PK+ VD Sbjct: 69 LELPDLVALAGKVVGFLVSELGAVTFPKNLSVD 101 Score = 58.9 bits (141), Expect = 7e-08 Identities = 24/38 (63%), Positives = 33/38 (86%) Frame = -1 Query: 77591 VEDAMADIAVVFHWAPADLDPLSLTELMEWRERARQRS 77478 V+D MAD+AV+FHW P++L P+SLTEL+ WRE+A +RS Sbjct: 100 VDDLMADVAVIFHWPPSELYPMSLTELITWREKALRRS 137 >ref|NP_046780.1|gpE+E' Length = 142 Score = 82.4 bits (202), Expect = 6e-15 Identities = 45/93 (48%), Positives = 59/93 (63%), Gaps = 8/93 (8%) Frame = -2 Query: 77860 LDTPIQRGEQIITSVELRKPDAGSLRGVSLTDVLRMDVNALITVLPRISTPALTQPELMR 77681 LD P++RGEQ+I V L KP AG+LRGVSL V +V+ALI VLPR++ P LT+ E+ Sbjct: 9 LDNPVKRGEQVIEQVTLMKPSAGTLRGVSLAAVANSEVDALIKVLPRMTAPMLTEQEVAA 68 Query: 77680 LDPADLVQLGSEVAAFLL--------PKSAQVD 77606 L+ DLV L +V FL+ PK+ VD Sbjct: 69 LELPDLVALAGKVVGFLVAELGAVTFPKNLSVD 101 Score = 58.9 bits (141), Expect = 7e-08 Identities = 24/38 (63%), Positives = 33/38 (86%) Frame = -1 Query: 77591 VEDAMADIAVVFHWAPADLDPLSLTELMEWRERARQRS 77478 V+D MAD+AV+FHW P++L P+SLTEL+ WRE+A +RS Sbjct: 100 VDDLMADVAVIFHWPPSELYPMSLTELITWREKALRRS 137 >ref|NP_878222.1|gpE+E' Length = 142 Score = 82.4 bits (202), Expect = 6e-15 Identities = 45/93 (48%), Positives = 60/93 (64%), Gaps = 8/93 (8%) Frame = -2 Query: 77860 LDTPIQRGEQIITSVELRKPDAGSLRGVSLTDVLRMDVNALITVLPRISTPALTQPELMR 77681 LD P++RGEQ+I V L KP+AG+LRGVSL V +V+ALI VLPR++ P LT+ E+ Sbjct: 9 LDNPVKRGEQVIEQVTLMKPNAGTLRGVSLAAVANSEVDALIKVLPRMTAPMLTEQEVAA 68 Query: 77680 LDPADLVQLGSEVAAFLL--------PKSAQVD 77606 L+ DLV L +V FL+ PK+ VD Sbjct: 69 LELPDLVALAGKVVGFLVAELGAVTFPKNFSVD 101 Score = 58.9 bits (141), Expect = 7e-08 Identities = 24/38 (63%), Positives = 33/38 (86%) Frame = -1 Query: 77591 VEDAMADIAVVFHWAPADLDPLSLTELMEWRERARQRS 77478 V+D MAD+AV+FHW P++L P+SLTEL+ WRE+A +RS Sbjct: 100 VDDLMADVAVIFHWPPSELYPMSLTELITWREKALRRS 137 >ref|NP_996680.1|putative antirepressor Length = 236 Score = 80.5 bits (197), Expect = 2e-14 Identities = 41/104 (39%), Positives = 65/104 (62%), Gaps = 1/104 (0%) Frame = -2 Query: 66316 QLIPVFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSV-LSKS 66140 QLI + E N Q+ +ELH FLE+ R++ W R ++ YGF+E DF + + Sbjct: 3 QLITITQNE---NNDQVLSGRELHEFLEITERYSTWFERMLK-YGFVENIDFVGCKVFNT 58 Query: 66139 AGGRPSQDYHLTLDMAKELAMVENNEKGRQIRRYFIAMEREARE 66008 + QD+ L +DMAKE++M++ NEKG+Q R+YFI +E+E ++ Sbjct: 59 LAKQELQDHALKIDMAKEISMIQRNEKGKQARQYFIEVEKELKQ 102 >ref|NP_076640.1|anti-repressor Length = 236 Score = 79.3 bits (194), Expect = 5e-14 Identities = 40/104 (38%), Positives = 65/104 (62%), Gaps = 1/104 (0%) Frame = -2 Query: 66316 QLIPVFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSV-LSKS 66140 QLI + E N Q+ +ELH FL++ R++ W R ++ YGF+E DF + + Sbjct: 3 QLITITQNE---NNDQVVSGRELHEFLDITERYSTWFERMLK-YGFVENIDFVGCKVFNT 58 Query: 66139 AGGRPSQDYHLTLDMAKELAMVENNEKGRQIRRYFIAMEREARE 66008 + QD+ L +DMAKE++M++ NEKG+Q R+YFI +E+E ++ Sbjct: 59 LAKQELQDHALKIDMAKEISMIQRNEKGKQARQYFIEVEKELKQ 102 >ref|NP_052271.1|Orf51; P2 E homolog; tail protein Length = 111 Score = 76.6 bits (187), Expect = 3e-13 Identities = 41/83 (49%), Positives = 57/83 (68%) Frame = -2 Query: 77860 LDTPIQRGEQIITSVELRKPDAGSLRGVSLTDVLRMDVNALITVLPRISTPALTQPELMR 77681 LD PI+R Q I V L +P+AG+LRGVSL V + +V+ALI VLPR++ PALT EL Sbjct: 29 LDKPIKRAGQTIEKVTLIEPNAGTLRGVSLAAVAQSEVDALIKVLPRMTYPALTTQELTA 88 Query: 77680 LDPADLVQLGSEVAAFLLPKSAQ 77612 ++ D++ L ++V FL P SA+ Sbjct: 89 MNLPDMLSLAAKVIGFLSPASAE 111 >ref|NP_958079.1|gp23 Length = 111 Score = 76.6 bits (187), Expect = 3e-13 Identities = 41/83 (49%), Positives = 57/83 (68%) Frame = -2 Query: 77860 LDTPIQRGEQIITSVELRKPDAGSLRGVSLTDVLRMDVNALITVLPRISTPALTQPELMR 77681 LD PI+R Q I V L +P+AG+LRGVSL V + +V+ALI VLPR++ PALT EL Sbjct: 29 LDKPIKRAGQTIDKVTLIEPNAGTLRGVSLAAVAQSEVDALIKVLPRMTYPALTAQELTA 88 Query: 77680 LDPADLVQLGSEVAAFLLPKSAQ 77612 ++ D++ L ++V FL P SA+ Sbjct: 89 MNLPDMLSLAAKVIGFLSPASAE 111 >ref|NP_049995.1|anti-repressor Length = 287 Score = 75.5 bits (184), Expect = 7e-13 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 6/123 (4%) Frame = -2 Query: 66367 RPFV-C*NHCGGGMTMTQQLIPVFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIE 66191 +PF C N MTM + + N LD N+ + A++LH LEV+TRF+ W+ + + Sbjct: 31 KPFPKCNNELRKEMTMNE----LINVTLDKNNEPIVSARQLHKTLEVKTRFSQWVEQNFK 86 Query: 66190 QYGFIEGEDFYSVLSKS-----AGGRPSQDYHLTLDMAKELAMVENNEKGRQIRRYFIAM 66026 F E EDF SV++ + G + QDY +T+ MA+ LAM+ KG ++R YFI + Sbjct: 87 I--FKENEDFSSVVTTTQQNQYGGTKELQDYAVTIRMAEHLAMMSKTNKGHEVREYFIKV 144 Query: 66025 ERE 66017 E++ Sbjct: 145 EKD 147 >ref|NP_438118.1|antirepressor Length = 242 Score = 74.7 bits (182), Expect = 1e-12 Identities = 35/95 (36%), Positives = 61/95 (64%), Gaps = 4/95 (4%) Frame = -2 Query: 66289 LDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSVLSKSAGGRPSQ--- 66119 L+ + + ++LH LE++T++ W+ R+ YGF E ED+ ++ K + +Q Sbjct: 9 LNENQEPIVSGRDLHQALEIKTQYTKWL-ERMSDYGFEENEDYVAISQKRLTAQGNQTEY 67 Query: 66118 -DYHLTLDMAKELAMVENNEKGRQIRRYFIAMERE 66017 D+ L LDMAKE+AM++ NEK +Q+R+YFI +E++ Sbjct: 68 TDHVLKLDMAKEIAMLQRNEKSKQVRKYFIQIEKD 102 >ref|NP_795546.1|putative P1-type antirepressor Length = 242 Score = 74.7 bits (182), Expect = 1e-12 Identities = 35/95 (36%), Positives = 61/95 (64%), Gaps = 4/95 (4%) Frame = -2 Query: 66289 LDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSVLSKSAGGRPSQ--- 66119 L+ + + ++LH LE++T++ W+ R+ YGF E ED+ ++ K + +Q Sbjct: 9 LNENQEPIVSGRDLHQALEIKTQYTKWL-ERMSDYGFEENEDYVAISQKRLTAQGNQTEY 67 Query: 66118 -DYHLTLDMAKELAMVENNEKGRQIRRYFIAMERE 66017 D+ L LDMAKE+AM++ NEK +Q+R+YFI +E++ Sbjct: 68 TDHVLKLDMAKEIAMLQRNEKSKQVRKYFIQIEKD 102 >ref|NP_958078.1|gp23.5 Length = 162 Score = 74.7 bits (182), Expect = 1e-12 Identities = 40/90 (44%), Positives = 58/90 (64%) Frame = -2 Query: 77860 LDTPIQRGEQIITSVELRKPDAGSLRGVSLTDVLRMDVNALITVLPRISTPALTQPELMR 77681 LD PI+R Q I V L +P+AG+LRGVSL V + +V+ALI VLPR++ PALT EL Sbjct: 29 LDKPIKRAGQTIDKVTLIEPNAGTLRGVSLAAVAQSEVDALIKVLPRMTYPALTAQELTA 88 Query: 77680 LDPADLVQLGSEVAAFLLPKSAQVDVSPGM 77591 ++ D++ L ++V FL+ +D P + Sbjct: 89 MNLPDMLSLAAKVIGFLVTGFGGIDFPPDL 118 Score = 57.0 bits (136), Expect = 3e-07 Identities = 25/37 (67%), Positives = 31/37 (83%) Frame = -1 Query: 77588 EDAMADIAVVFHWAPADLDPLSLTELMEWRERARQRS 77478 +D MADIAV+FHW P++L LSLTEL+ WRE+A QRS Sbjct: 121 DDLMADIAVIFHWPPSELCSLSLTELITWREKALQRS 157 >ref|NP_112664.1|INT Length = 485 Score = 72.8 bits (177), Expect = 5e-12 Identities = 84/327 (25%), Positives = 142/327 (43%), Gaps = 8/327 (2%) Frame = -1 Query: 60944 RVAIYARYSSDKQAET--SIADQVAICQARALREGWQVVFSHSDNAVSGSTAVGSRPXXX 60771 +VAIY R S+ QAE SI +Q+ A GWQV +++D SG+ RP Sbjct: 4 KVAIYTRVSTTNQAEEGFSIDEQIDRLTKYAEAMGWQVSDTYTDAGFSGAKL--ERPAMQ 61 Query: 60770 XXXXXXXXGRFDVLLLEGLDRLSRDQVEQERIVRRLEHRD-IRIVGLADGYDSQHAGRKV 60594 FD +L+ LDRLSR + +V+ + ++ I + L + D+ A + Sbjct: 62 RLINDIENKAFDTVLVYKLDRLSRSVRDTLYLVKDVFTKNKIDFISLNESIDTSSAMGSL 121 Query: 60593 MRGVRGLINELYLDDLRHKTQRGMHGQVDRG--YIAGGKCYGYRIMREEGGSRYEIDEAQ 60420 + INE ++++ + G G+ G + +GY R+ G EI Q Sbjct: 122 FLTILSAINEFERENIKERMTMGKLGRAKSGKSMMWTKTAFGYYHNRKTG--ILEIVPLQ 179 Query: 60419 AHWVRWIFEQAASGRAFRGIVYELNERAVPSPRDSSWTLSAIYGSPVKGSGLLNNCLYVG 60240 A V IF SG + + +LNE +D W+ + + L+N +Y G Sbjct: 180 ATIVEQIFTDYLSGISLTKLRDKLNESG-HIGKDIPWSYRTLRQT-------LDNPVYCG 231 Query: 60239 RYIWNRSQWLKDPDTGRRQRVDRPRSEWRETAVPELRIVPDELWLRVRDRIDEGRDE-FG 60063 ++K D+ + + +P I+P E +L+V+ ++E + + + Sbjct: 232 --------YIKFKDS-LFEGMHKP-------------IIPYETYLKVQKELEERQQQTYE 269 Query: 60062 RKRSQRP--PGTLLGGLMRCPYCGGPM 59988 R + RP +L G+ RC YCG P+ Sbjct: 270 RNNNPRPFQAKYMLSGMARCGYCGAPL 296 >ref|YP_024720.1|gp47 Length = 401 Score = 72.0 bits (175), Expect = 8e-12 Identities = 50/236 (21%), Positives = 106/236 (44%), Gaps = 3/236 (1%) Frame = -1 Query: 73763 PYPICRVVVDGRDITAAISPRLIAISLTDNRGLEADTLDIQLSDHDGLLA---IPPRGAT 73593 P P+ +V + ++IT I+P +++++ TD ++D +++ L D DG P +G Sbjct: 15 PEPVFTLVYEQKNITNDIAPYVLSVAYTDFLSGQSDEIEVVLEDTDGRWLDAWYPGKGDA 74 Query: 73592 VRLWLGWSDSGLVDKGSYTVDETEHSGAPDVLSIRARSADLREGLKTKRERSWDQKALGD 73413 + L +G++ + L+ G + +DE P ++IR ++ +++++ ++++ L Sbjct: 75 LTLKIGYAGAPLLACGRFEIDEIGFDEPPSTVTIRGLGTGVKASVRSRKAKAYEHTTLAT 134 Query: 73412 VIKAIATSNGLTAVIAPGLAQIPLAHLDQANESDANLLARLGEQHDAIATVKAGRLLFMS 73233 + +A N LT + + I + + Q E D L RL ++ + +L+F Sbjct: 135 IAARVAKRNHLT--LTGRIRDIRIDRVTQYQEQDVAFLTRLAREYGYAFKISGSKLIFSE 192 Query: 73232 AGKSATASGLPLPHITLTRADGDQHRFLQADRDSYSGVRAYYYDVNSAEKKEAIAG 73065 + + RAD R +D Y+ + Y+ N KK + G Sbjct: 193 LADLRGSDAVQ----QFKRADLKSIRLRDKIKDVYAQAKVGYH--NPKTKKLVVYG 242 >ref|NP_758932.1|ORF40 Length = 167 Score = 70.5 bits (171), Expect = 2e-11 Identities = 39/147 (26%), Positives = 77/147 (52%), Gaps = 1/147 (0%) Frame = -2 Query: 78385 ITLPPLARKMESYRGGGMNGPVKVDQGMSDDGIQLEWTLGGLDLVVLRQFGATTADAVLL 78206 +T P L K E ++ GGM+ P+++DQGM + ++ +T+ + + +G + + Sbjct: 25 VTPPKLTLKTEEFKAGGMDAPLELDQGM--EKLECNFTVASYEKELFAAYGLVPGKMINV 82 Query: 78205 RFAGSYQRDDTAEISAVEVVVRGRHEEINLGDAEPGEDTEVSIVTTCSYYKL-IVDGNTE 78029 G++++D E V +V+ G +E++ G + GE ++ + + G + Sbjct: 83 TLRGAFEQD--GETREVVMVLNGSWKELDFGTWKSGEKAQLKVAVGLQEVETKNPTGEEK 140 Query: 78028 IEIDLLNMIEIVNGVDMLAAQRAAIGM 77948 + ID+ NM+ +NG D+L A R AIG+ Sbjct: 141 VFIDIPNMVRRINGTDLLEAARKAIGL 167 >ref|NP_510905.1|similar to phage phi PVL antirepressor Length = 250 Score = 68.6 bits (166), Expect = 9e-11 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 4/99 (4%) Frame = -2 Query: 66304 VFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSVLSKSAGGRP 66125 +FN + + +ELH LEV+T + DW R ++ YGF E D+ ++ K A + Sbjct: 13 MFNIQEKENGEIAISGRELHQALEVKTAYKDWFPRMLK-YGFEENTDYTAIAQKRATAQG 71 Query: 66124 SQ----DYHLTLDMAKELAMVENNEKGRQIRRYFIAMER 66020 + D+ LTLD AKE+AM++ +E G++ R+YFI +E+ Sbjct: 72 NMTHYIDHALTLDTAKEIAMIQRSEPGKRARQYFIQVEK 110 >ref|NP_958633.1|77ORF014 Length = 250 Score = 68.6 bits (166), Expect = 9e-11 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 4/99 (4%) Frame = -2 Query: 66304 VFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSVLSKSAGGRP 66125 +FN + + +ELH LEV+T + DW R ++ YGF E D+ ++ K A + Sbjct: 13 MFNIQEKENGEIAISGRELHQALEVKTAYKDWFPRMLK-YGFEENTDYTAIAQKRATAQG 71 Query: 66124 SQ----DYHLTLDMAKELAMVENNEKGRQIRRYFIAMER 66020 + D+ LTLD AKE+AM++ +E G++ R+YFI +E+ Sbjct: 72 NMTHYIDHALTLDTAKEIAMIQRSEPGKRARQYFIQVEK 110 >ref|NP_046569.1|IMPB Length = 416 Score = 67.0 bits (162), Expect = 3e-10 Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 11/240 (4%) Frame = -3 Query: 58431 RKIIHVDCDCFYA---AIEMRDDPRLAGRPLAVGGAPDRRG--VIATCNYEARAYGVHSA 58267 + I+ VD FYA A+ M +P LAV G +R+G V+A + +G+ + Sbjct: 10 KNILCVDMKSFYASVSAVTMGLNPLTCY--LAVVGNTERQGSVVLAASPALKKDFGIKTG 67 Query: 58266 MPARQALKLCPELLIVRPRFEAYKVVSREIQRILRDY--SELVEPLSLDEAYLDVSASPH 58093 + + P + IV P+ + + VS EI ++ + + V S+DE++LD Sbjct: 68 SRLFE-IPEDPRIHIVNPQMKLFIRVSTEITKLFYRFVPEKCVHTYSIDESFLDAGKE-- 124 Query: 58092 FSGSATRIAQDVRRRVWQELRITVSAGVAPNKFLAKIASDWRKPDGLFVIPPAEVEAFVA 57913 +A+ ++ +W+E + + G+ N L+K+A D I E Sbjct: 125 ---DPEEMAKAIQSSMWREFGLMCTVGIGDNMLLSKLALDLESKKTKSGIARWRYEDVPN 181 Query: 57912 EL----PVSRLHGVGKVTAERLARLGVRTCAELRQWSRLALMREFGSFGERLALLARGID 57745 +L P+S++ G+G L R+G+ T +L ++ L ++FG G +L A GID Sbjct: 182 KLWKVRPLSKMWGIGGRMERNLNRMGISTIGQLAKFPLELLEKKFGIMGNQLYYHAHGID 241 >ref|NP_878224.1|gpT Length = 815 Score = 66.6 bits (161), Expect = 3e-10 Identities = 56/245 (22%), Positives = 111/245 (45%), Gaps = 19/245 (7%) Frame = -2 Query: 77461 MARDLSLQVRLSAIDRITAPLRRIVQGSGALAQAMKASQDQLKALNQQQRDLSGYRQTNV 77282 M+ ++ LQV L A+D+ + P + I S +L+ ++ +Q L+ LN Q + G+R+T+ Sbjct: 1 MSDNVKLQVLLRAVDQASRPFKSIRTASRSLSGDIRETQKSLRELNGQASRIEGFRKTSA 60 Query: 77281 EIA-------RQTKAIQALQARTREHTQLLEKQRAVHVNLKGNLKAAQTQYNKLAKALIE 77123 ++A + + +AL + + + Q V + K + Q +YN+L ++ Sbjct: 61 QLAVTGHALEKARQEAEALATQFKNTERPTRAQAKVLESAKRAAEDLQAKYNRLTDSVKR 120 Query: 77122 GKGETASFHFELEKAQIKLQSAQQAFNRSSSTIKTYKDRIRQADSQLAQLGSQQQNSQ-- 76949 + E A+ Q + + +++ + +D + + +Q A+L + +Q Q Sbjct: 121 QQRELAAVGINTRNLAHDEQGLKNRISETTAQLNRQRDALARVSAQQAKLNAVKQRYQAG 180 Query: 76948 ERLAGYKRRLDEAGIGTERLGSRA--------RQLRGEQERLNAVLEAQK--ARLAAVTA 76799 + LAG + AG+G G+ A + + L AVL K A +AA+ Sbjct: 181 KELAGTMASVGAAGVGIAAAGTMAGVKLLMPGYEFAQKNSELQAVLGVAKDSAEMAALRK 240 Query: 76798 QQERL 76784 Q +L Sbjct: 241 QARQL 245 Score = 49.7 bits (117), Expect = 4e-05 Identities = 29/102 (28%), Positives = 42/102 (41%) Frame = -2 Query: 75067 PIGLTISALALAGMALLKYWQPVKAXXXXXXXXXXXGLEXXXXXXXXXXXXXXXLKPLWD 74888 P+ ++A+ + + KYW+PV A +E LKP++D Sbjct: 597 PVVAVVAAIVAGALLIRKYWEPVSAFFGGV-------VEGLKAAFAPVGELFTPLKPVFD 649 Query: 74887 GIAGAMSAAWQWVSRLFAPFQATATELQNATSRGQAFGLWLA 74762 + + AAWQW L AP +AT L G FG LA Sbjct: 650 WLGEKLQAAWQWFKNLIAPVKATQDTLNRCRDTGVMFGQALA 691 >ref|NP_835526.1|anti repressor Length = 250 Score = 64.7 bits (156), Expect = 1e-09 Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 4/99 (4%) Frame = -2 Query: 66304 VFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSV---LSKSAG 66134 +FN + + +ELH LEV+T + W R+ YGF E D+ + G Sbjct: 13 MFNIQEKENGEIAISGRELHQALEVKTPYKKWF-ERMSDYGFEENIDYIVTDIFVHNPLG 71 Query: 66133 GRPSQ-DYHLTLDMAKELAMVENNEKGRQIRRYFIAMER 66020 GR +Q D+ LTLD AKE+AM++ +E G++ R+YFI +E+ Sbjct: 72 GRQNQTDHALTLDTAKEIAMIQRSEPGKRARQYFIQVEK 110 >ref|NP_046782.1|gpT Length = 815 Score = 63.9 bits (154), Expect = 2e-09 Identities = 54/245 (22%), Positives = 110/245 (44%), Gaps = 19/245 (7%) Frame = -2 Query: 77461 MARDLSLQVRLSAIDRITAPLRRIVQGSGALAQAMKASQDQLKALNQQQRDLSGYRQTNV 77282 M+ ++ LQV L A+D+ + P + I S +L+ ++ +Q L+ LN + G+R+T+ Sbjct: 1 MSNNVKLQVLLRAVDQASRPFKSIRTASKSLSGDIRETQKSLRELNGHASRIEGFRKTSA 60 Query: 77281 EIA-------RQTKAIQALQARTREHTQLLEKQRAVHVNLKGNLKAAQTQYNKLAKALIE 77123 ++A + + +AL + + + Q V + K + Q +YN+L ++ Sbjct: 61 QLAVTGHALEKARQEAEALATQFKNTERPTRAQAKVLESAKRAAEDLQAKYNRLTDSVKR 120 Query: 77122 GKGETASFHFELEKAQIKLQSAQQAFNRSSSTIKTYKDRIRQADSQLAQLGSQQQNSQ-- 76949 + E A+ Q + + +++ + +D + + +Q A+L + +Q Q Sbjct: 121 QQRELAAVGINTRNLAHDEQGLKNRISETTAQLNRQRDALVRVSAQQAKLNAVKQRYQAG 180 Query: 76948 ERLAGYKRRLDEAGIGTERLGSRA--------RQLRGEQERLNAVLEAQK--ARLAAVTA 76799 + LAG + AG+G G+ A + + L AV+ K A +AA+ Sbjct: 181 KELAGNMASVGAAGVGIAAAGTMAGVKLLMPGYEFAQKNSELQAVIGVAKDSAEMAALRK 240 Query: 76798 QQERL 76784 Q +L Sbjct: 241 QARQL 245 Score = 49.7 bits (117), Expect = 4e-05 Identities = 29/102 (28%), Positives = 42/102 (41%) Frame = -2 Query: 75067 PIGLTISALALAGMALLKYWQPVKAXXXXXXXXXXXGLEXXXXXXXXXXXXXXXLKPLWD 74888 P+ ++A+ + + KYW+PV A +E LKP++D Sbjct: 597 PVVAVVAAIVAGALLIRKYWEPVSAFFGGV-------VEGLKAAFAPVGELFTPLKPVFD 649 Query: 74887 GIAGAMSAAWQWVSRLFAPFQATATELQNATSRGQAFGLWLA 74762 + + AAWQW L AP +AT L G FG LA Sbjct: 650 WLGEKLQAAWQWFKNLIAPVKATQDTLNRCRDTGVMFGQALA 691 >ref|NP_839874.1|gpT Length = 815 Score = 63.9 bits (154), Expect = 2e-09 Identities = 54/245 (22%), Positives = 109/245 (44%), Gaps = 19/245 (7%) Frame = -2 Query: 77461 MARDLSLQVRLSAIDRITAPLRRIVQGSGALAQAMKASQDQLKALNQQQRDLSGYRQTNV 77282 M+ ++ LQV L A+D+ + P + I S +L+ ++ +Q L+ LN + G+R+T+ Sbjct: 1 MSNNVKLQVLLRAVDQASRPFKSIRTASKSLSGDIRETQKSLRELNGHASRIEGFRKTSA 60 Query: 77281 EIA-------RQTKAIQALQARTREHTQLLEKQRAVHVNLKGNLKAAQTQYNKLAKALIE 77123 ++A + + +AL + + + Q V + K + Q +YN+L ++ Sbjct: 61 QLAVTGHALEKARQEAEALATQFKNTERPTRAQAKVLESAKRAAEDLQAKYNRLTDSVKR 120 Query: 77122 GKGETASFHFELEKAQIKLQSAQQAFNRSSSTIKTYKDRIRQADSQLAQLGSQQQNSQ-- 76949 + E A+ Q + + +++ + +D + + +Q A+L + +Q Q Sbjct: 121 QQRELAAVGINTRNLAHDEQGLKNRISETTAQLNRQRDALARVSAQQAKLNAVKQRYQAG 180 Query: 76948 ERLAGYKRRLDEAGIGTERLGSRA--------RQLRGEQERLNAVLEAQK--ARLAAVTA 76799 + LAG + AG+G G+ A + + L AVL K A + A+ Sbjct: 181 KELAGNMASVGAAGVGIAAAGTMAGVKLLMPGYEFAQKNSELQAVLGVAKDSAEMTALRK 240 Query: 76798 QQERL 76784 Q +L Sbjct: 241 QARQL 245 Score = 50.8 bits (120), Expect = 2e-05 Identities = 30/102 (29%), Positives = 42/102 (41%) Frame = -2 Query: 75067 PIGLTISALALAGMALLKYWQPVKAXXXXXXXXXXXGLEXXXXXXXXXXXXXXXLKPLWD 74888 P+ ++A+ + + KYW+PV A +E LKPL+D Sbjct: 597 PVVAVVAAIVAGALLIRKYWEPVSAFFGGV-------VEGLKAAFAPVGELFTPLKPLFD 649 Query: 74887 GIAGAMSAAWQWVSRLFAPFQATATELQNATSRGQAFGLWLA 74762 + + AAWQW L AP +AT L G FG LA Sbjct: 650 WLGEKLQAAWQWFKNLIAPVKATQDTLNRCRDTGVMFGQALA 691 >ref|NP_958564.1|putative antirepressor Length = 249 Score = 61.6 bits (148), Expect = 1e-08 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 6/92 (6%) Frame = -2 Query: 66277 NQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDF------YSVLSKSAGGRPSQD 66116 +QQL A++LH L + +F+ W + +Q F +G DF Y V S + R D Sbjct: 12 DQQLVSARDLHKALGFKKKFSGWWEQNQDQ--FEKGIDFNEVPKGYIVESGNGTTRAYDD 69 Query: 66115 YHLTLDMAKELAMVENNEKGRQIRRYFIAMER 66020 Y LT+D AKEL M+ EKG+ IR+YFI +E+ Sbjct: 70 YWLTVDTAKELCMMSRTEKGKTIRKYFIQVEK 101 >ref|NP_803362.1|anti-repressor Length = 249 Score = 60.1 bits (144), Expect = 3e-08 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 4/99 (4%) Frame = -2 Query: 66304 VFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSVLSKSAGG-- 66131 +FN + + A+EL+ LEV+ RF+ W ++ F E DF SVL+ + Sbjct: 13 MFNIQEKENGEIAISARELYKALEVKKRFSAWAEINLKH--FKENRDFTSVLTSTVVNNG 70 Query: 66130 --RPSQDYHLTLDMAKELAMVENNEKGRQIRRYFIAMER 66020 R +DY LTLD+AK +AM+ EKG R YFI +E+ Sbjct: 71 AVRQLEDYALTLDVAKHVAMMSGTEKGFDFREYFIQVEK 109 >ref|NP_058473.1|anti repressor Length = 249 Score = 60.1 bits (144), Expect = 3e-08 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 4/99 (4%) Frame = -2 Query: 66304 VFNGELDGRNQQLCDAQELHAFLEVQTRFNDWIGRRIEQYGFIEGEDFYSVLSKSAGG-- 66131 +FN + + A+EL+ LEV+ RF+ W ++ F E DF SVL+ + Sbjct: 13 MFNIQEKENGEIAISARELYKALEVKKRFSAWAEINLKH--FKENRDFTSVLTSTVVNNG 70 Query: 66130 --RPSQDYHLTLDMAKELAMVENNEKGRQIRRYFIAMER 66020 R +DY LTLD+AK +AM+ EKG R YFI +E+ Sbjct: 71 AVRQLEDYALTLDVAKHVAMMSGTEKGFDFREYFIQVEK 109 >ref|NP_052273.1|G protein Length = 812 Score = 60.1 bits (144), Expect = 3e-08 Identities = 60/234 (25%), Positives = 103/234 (44%) Frame = -2 Query: 77461 MARDLSLQVRLSAIDRITAPLRRIVQGSGALAQAMKASQDQLKALNQQQRDLSGYRQTNV 77282 M+ +L L+V L A+D+ T PL+ I S +L+ ++ +Q L+ LN Q + G+R+ + Sbjct: 1 MSNNLRLEVLLKAVDQATRPLKSIQTASKSLSGDIRDTQKGLRDLNGQASKIDGFRKASA 60 Query: 77281 EIARQTKAIQALQARTREHTQLLEKQRAVHVNLKGNLKAAQTQYNKLAKALIEGKGETAS 77102 ++A + QAL RE +L AV N AQ Q Sbjct: 61 QLAVTS---QALDKAKREAGEL-----AVQFKNTTNPTRAQAQ----------------- 95 Query: 77101 FHFELEKAQIKLQSAQQAFNRSSSTIKTYKDRIRQADSQLAQLGSQQQNSQERLAGYKRR 76922 A +A R++S ++T + +R + Q+Q S+ Sbjct: 96 --------------ALEAARRAASELQTKYNSLRTS--------VQRQRSE--------- 124 Query: 76921 LDEAGIGTERLGSRARQLRGEQERLNAVLEAQKARLAAVTAQQERLTKAQKSYE 76760 L +AGI T L + R+L+ A + Q+ LA V+AQQ +L++ ++ Y+ Sbjct: 125 LMQAGINTRTLSADERRLKTSISETTAHVNRQREALARVSAQQAKLSRVKERYK 178 Score = 44.3 bits (103), Expect = 0.002 Identities = 27/102 (26%), Positives = 41/102 (40%) Frame = -2 Query: 75067 PIGLTISALALAGMALLKYWQPVKAXXXXXXXXXXXGLEXXXXXXXXXXXXXXXLKPLWD 74888 PI +A+ + + KYW+P+ A +E L P++D Sbjct: 596 PIVAVGAAIVAGALLIRKYWEPISAFFSGV-------IEGIMSAFAPVAEMFAPLAPIFD 648 Query: 74887 GIAGAMSAAWQWVSRLFAPFQATATELQNATSRGQAFGLWLA 74762 G+ + WQW L AP +AT L + + G FG LA Sbjct: 649 GLGEKLRGVWQWFKDLIAPVKATQETLDSCKNVGVIFGQALA 690 >ref|NP_758933.1|ORF41 Length = 94 Score = 59.7 bits (143), Expect = 4e-08 Identities = 31/76 (40%), Positives = 48/76 (63%) Frame = -2 Query: 77860 LDTPIQRGEQIITSVELRKPDAGSLRGVSLTDVLRMDVNALITVLPRISTPALTQPELMR 77681 LDT + G+ + + LRKP G LRG+ L DV++MD A+ ++PRI+ T + Sbjct: 12 LDTAVGGGK--MKHLALRKPMPGDLRGLKLLDVIQMDAGAVANLVPRIALNGFTAQHFYQ 69 Query: 77680 LDPADLVQLGSEVAAF 77633 L+PADL+++ +EVA F Sbjct: 70 LEPADLLEVMTEVATF 85 >ref|NP_612990.1|Ea10 protein Length = 122 Score = 59.7 bits (143), Expect = 4e-08 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 1/127 (0%) Frame = -2 Query: 61567 IKRYVVEDKWGGDYSVTLEVDHGILTEERAQQINGFWSGDDYRLDEESGDVVMAVIRLAG 61388 IK+Y+++ W S+ +E+DH ++TEE+ QIN FWS +YRL++ + +I LA Sbjct: 4 IKKYIIDYDWKA--SIEIEIDHDVMTEEKLHQINNFWSDSEYRLNKHGSVLNAVLIMLAQ 61 Query: 61387 ATLIRVMFEQGGAFFGEKDTGTQLAWTDDLHEEEGWGGTDETIFGWCGIRCVGADVEVPG 61208 L+ + A+ + W D + +EGW D G GIR D++ G Sbjct: 62 HALLIAISSDLNAY----GVVCEFDWNDG-NGQEGWPSMD----GSEGIRI--TDIDTSG 110 Query: 61207 -FDNVEL 61190 FD+ ++ Sbjct: 111 IFDSDDM 117 >ref|NP_851954.1|hypothetical protein Length = 122 Score = 59.7 bits (143), Expect = 4e-08 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 1/127 (0%) Frame = -2 Query: 61567 IKRYVVEDKWGGDYSVTLEVDHGILTEERAQQINGFWSGDDYRLDEESGDVVMAVIRLAG 61388 IK+Y+++ W S+ +E+DH ++TEE+ QIN FWS +YRL++ + +I LA Sbjct: 4 IKKYIIDYDWKA--SIEIEIDHDVMTEEKLHQINNFWSDSEYRLNKHGSVLNAVLIMLAQ 61 Query: 61387 ATLIRVMFEQGGAFFGEKDTGTQLAWTDDLHEEEGWGGTDETIFGWCGIRCVGADVEVPG 61208 L+ + A+ + W D + +EGW D G GIR D++ G Sbjct: 62 HALLIAISSDLNAY----GVVCEFDWNDG-NGQEGWPSMD----GSEGIRI--TDIDTSG 110 Query: 61207 -FDNVEL 61190 FD+ ++ Sbjct: 111 IFDSDDM 117 >ref|NP_049478.1|putative single-stranded DNA binding protein Length = 122 Score = 59.7 bits (143), Expect = 4e-08 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 1/127 (0%) Frame = -2 Query: 61567 IKRYVVEDKWGGDYSVTLEVDHGILTEERAQQINGFWSGDDYRLDEESGDVVMAVIRLAG 61388 IK+Y+++ W S+ +E+DH ++TEE+ QIN FWS +YRL++ + +I LA Sbjct: 4 IKKYIIDYDWKA--SIEIEIDHDVMTEEKLHQINNFWSDSEYRLNKHGSVLNAVLIMLAQ 61 Query: 61387 ATLIRVMFEQGGAFFGEKDTGTQLAWTDDLHEEEGWGGTDETIFGWCGIRCVGADVEVPG 61208 L+ + A+ + W D + +EGW D G GIR D++ G Sbjct: 62 HALLIAISSDLNAY----GVVCEFDWNDG-NGQEGWPSMD----GSEGIRI--TDIDTSG 110 Query: 61207 -FDNVEL 61190 FD+ ++ Sbjct: 111 IFDSDDM 117 >ref|NP_490624.1|hypothetical protein Length = 39 Score = 59.3 bits (142), Expect = 5e-08 Identities = 27/34 (79%), Positives = 29/34 (85%) Frame = -1 Query: 77579 MADIAVVFHWAPADLDPLSLTELMEWRERARQRS 77478 MAD+AV FHWAP +D LSLTELMEWRERAR RS Sbjct: 1 MADLAVTFHWAPDHMDRLSLTELMEWRERARVRS 34 >ref|NP_040621.1|Putative single-stranded DNA binding protein Length = 122 Score = 58.9 bits (141), Expect = 7e-08 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 1/127 (0%) Frame = -2 Query: 61567 IKRYVVEDKWGGDYSVTLEVDHGILTEERAQQINGFWSGDDYRLDEESGDVVMAVIRLAG 61388 IK+Y+++ W S+ +E+DH ++TEE+ QIN FWS +YRL++ + +I LA Sbjct: 4 IKKYIIDYDWKA--SIEIEIDHDVMTEEKLHQINNFWSDSEYRLNKHGSVLNAVLIMLAQ 61 Query: 61387 ATLIRVMFEQGGAFFGEKDTGTQLAWTDDLHEEEGWGGTDETIFGWCGIRCVGADVEVPG 61208 L+ + A+ + W D + +EGW D G GIR D++ G Sbjct: 62 HALLIAISSDLNAY----GVVCEFDWNDG-NGQEGWPPMD----GSEGIRI--TDIDTSG 110 Query: 61207 -FDNVEL 61190 FD+ ++ Sbjct: 111 IFDSDDM 117 >ref|NP_859358.1|Ea10 protein Length = 122 Score = 58.5 bits (140), Expect = 9e-08 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 1/127 (0%) Frame = -2 Query: 61567 IKRYVVEDKWGGDYSVTLEVDHGILTEERAQQINGFWSGDDYRLDEESGDVVMAVIRLAG 61388 IK+Y+++ W S+ +E+DH ++TEE+ QIN FWS +YRL++ + +I LA Sbjct: 4 IKKYIIDYDWKA--SIEIEIDHDVMTEEKLHQINNFWSDSEYRLNKHGSLLNAVLIMLAQ 61 Query: 61387 ATLIRVMFEQGGAFFGEKDTGTQLAWTDDLHEEEGWGGTDETIFGWCGIRCVGADVEVPG 61208 L+ + A+ + W D + +EGW D G GIR D++ G Sbjct: 62 HALLIAISSDLNAY----GVVCEFDWNDG-NGQEGWPPMD----GSEGIRI--TDIDTSG 110 Query: 61207 -FDNVEL 61190 FD+ ++ Sbjct: 111 IFDSDDM 117 >ref|NP_859192.1|Ea10 protein Length = 122 Score = 58.5 bits (140), Expect = 9e-08 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 1/127 (0%) Frame = -2 Query: 61567 IKRYVVEDKWGGDYSVTLEVDHGILTEERAQQINGFWSGDDYRLDEESGDVVMAVIRLAG 61388 IK+Y+++ W S+ +E+DH ++TEE+ QIN FWS +YRL++ + +I LA Sbjct: 4 IKKYIIDYDWKA--SIEIEIDHDVMTEEKLHQINNFWSDSEYRLNKHGSLLNAVLIMLAQ 61 Query: 61387 ATLIRVMFEQGGAFFGEKDTGTQLAWTDDLHEEEGWGGTDETIFGWCGIRCVGADVEVPG 61208 L+ + A+ + W D + +EGW D G GIR D++ G Sbjct: 62 HALLIAISSDLNAY----GVVCEFDWNDG-NGQEGWPPMD----GSEGIRI--TDIDTSG 110 Query: 61207 -FDNVEL 61190 FD+ ++ Sbjct: 111 IFDSDDM 117 >ref|NP_050517.1|ea10 Length = 122 Score = 58.5 bits (140), Expect = 9e-08 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 1/127 (0%) Frame = -2 Query: 61567 IKRYVVEDKWGGDYSVTLEVDHGILTEERAQQINGFWSGDDYRLDEESGDVVMAVIRLAG 61388 IK+Y+++ W S+ +E+DH ++TEE+ QIN FWS +YRL++ + +I LA Sbjct: 4 IKKYIIDYDWKA--SIEIEIDHDVMTEEKLHQINNFWSDSEYRLNKHGSLLNAVLIMLAQ 61 Query: 61387 ATLIRVMFEQGGAFFGEKDTGTQLAWTDDLHEEEGWGGTDETIFGWCGIRCVGADVEVPG 61208 L+ + A+ + W D + +EGW D G GIR D++ G Sbjct: 62 HALLIAISSDLNAY----GVVCEFDWNDG-NGQEGWPPMD----GSEGIRI--TDIDTSG 110 Query: 61207 -FDNVEL 61190 FD+ ++ Sbjct: 111 IFDSDDM 117 >ref|NP_052272.1|Orf52; tail protein; probably produced by a translational frameshift from orf51 into orf52 Length = 58 Score = 57.0 bits (136), Expect = 3e-07 Identities = 25/37 (67%), Positives = 31/37 (83%) Frame = -1 Query: 77588 EDAMADIAVVFHWAPADLDPLSLTELMEWRERARQRS 77478 +D MADIAV+FHW P++L LSLTEL+ WRE+A QRS Sbjct: 17 DDLMADIAVIFHWPPSELYSLSLTELITWREKALQRS 53 >ref|NP_075302.1|gp35 Length = 500 Score = 56.6 bits (135), Expect = 3e-07 Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 5/215 (2%) Frame = -1 Query: 60947 MRVAIYARYSSDKQAETSIADQVAICQARALREGWQVVFSHSDNAVSGSTAVGSRPXXXX 60768 MR + R S A TS Q+ CQ + GW VV D VSG+ R Sbjct: 1 MRALVVIRLSRVTDATTSPERQLESCQQLCAQRGWDVVGVAEDLDVSGAVDPFDRKRRPN 60 Query: 60767 XXXXXXXGR--FDVLLLEGLDRLSRDQVEQERIVRRLE-HRDIRIVGLADGYDSQHAGRK 60597 FDV++ +DRL+R +++V E H+ + + +D+ Sbjct: 61 LARWLAFEEQPFDVIVAYRVDRLTRSIRHLQQLVHWAEDHKKLVVSATEAHFDTTTPFAA 120 Query: 60596 VMRGVRGLINELYLDDLRHKTQRGMHGQVDRGYIAGG-KCYGYRIMREEGGSRYEIDEAQ 60420 V+ + G + ++ L+ ++ + + H + G G +GY R +G R D Q Sbjct: 121 VVIALMGTVAQMELEAIKERNRSAAHFNIRAGKYRGSLPPWGYLPTRVDGEWRLVPDPVQ 180 Query: 60419 AHWVRWIFEQAASG-RAFRGIVYELNERAVPSPRD 60318 + ++ + + ++LN R V SP+D Sbjct: 181 RERILEVYHRVVDNHEPLHLVAHDLNRRGVLSPKD 215 >ref|NP_958080.1|gp24 Length = 814 Score = 56.2 bits (134), Expect = 4e-07 Identities = 59/234 (25%), Positives = 95/234 (40%) Frame = -2 Query: 77461 MARDLSLQVRLSAIDRITAPLRRIVQGSGALAQAMKASQDQLKALNQQQRDLSGYRQTNV 77282 M+ +L L+V L A+D+ T PL+ I S L+ ++ +Q L+ LN Q + G+R+ + Sbjct: 1 MSNNLRLEVLLKAVDQATRPLKSIQTASKTLSGDIRNTQKGLRDLNGQASKIDGFRKASA 60 Query: 77281 EIARQTKAIQALQARTREHTQLLEKQRAVHVNLKGNLKAAQTQYNKLAKALIEGKGETAS 77102 ++A QAL RE +L V K + Q A+AL K + Sbjct: 61 QLA---VTGQALDKAKREAGELA-------VQFKNTTSPTRAQ----AQALDAAKRAAS- 105 Query: 77101 FHFELEKAQIKLQSAQQAFNRSSSTIKTYKDRIRQADSQLAQLGSQQQNSQERLAGYKRR 76922 + QIK S + + R S Sbjct: 106 ------ELQIKYNSLRTSVQRQRS-----------------------------------E 124 Query: 76921 LDEAGIGTERLGSRARQLRGEQERLNAVLEAQKARLAAVTAQQERLTKAQKSYE 76760 L +AGI T L + R+L+ A L Q+ LA V+AQQ +L++ ++ Y+ Sbjct: 125 LMQAGINTRTLSADERRLKTSISETTAQLNRQREALARVSAQQAKLSRVKERYK 178 Score = 45.1 bits (105), Expect = 0.001 Identities = 31/121 (25%), Positives = 49/121 (40%) Frame = -2 Query: 75067 PIGLTISALALAGMALLKYWQPVKAXXXXXXXXXXXGLEXXXXXXXXXXXXXXXLKPLWD 74888 PI +A+ + + KYW+P+ A +E L P++D Sbjct: 597 PIVAVGAAIVAGALLIRKYWEPISAFFSGV-------IEGIMSAFAPVGEIFAPLAPIFD 649 Query: 74887 GIAGAMSAAWQWVSRLFAPFQATATELQNATSRGQAFGLWLAGLVNSLTAIAGKMFGFGV 74708 G+ + WQW L AP +AT L + + G FG LA + + + K+ GV Sbjct: 650 GLGEKLRGVWQWFKDLIAPVKATQETLDSCKNVGVIFGQALASALMAPLNVFNKLRS-GV 708 Query: 74707 D 74705 D Sbjct: 709 D 709 >ref|NP_490634.1|hypothetical protein Length = 97 Score = 51.6 bits (122), Expect = 1e-05 Identities = 32/89 (35%), Positives = 46/89 (51%) Frame = -3 Query: 65712 CPVCGSPVKIRNSARITLVTTEYVGSCQAAGCGAQIKGFFTWVAFVSPSGLPKHGLDLPV 65533 CP C S ++IR+S T C A CGA G +W +SPSGL + L LP+ Sbjct: 8 CPCCHSRMRIRSSEGQTPCFRSMYAQCTNALCGATFTGSLSWDYQLSPSGLERPMLVLPM 67 Query: 65532 VPEEERLRLWRHHVKGCESRQIDLVDQLE 65446 P + R +L R + + Q+DL+D +E Sbjct: 68 APSKTR-QLARRDL-AAATNQLDLLDHVE 94 >ref|NP_599068.1|unknown Length = 183 Score = 50.4 bits (119), Expect = 2e-05 Identities = 33/113 (29%), Positives = 54/113 (47%) Frame = -3 Query: 67257 VCGYPGGRECAAARLGMPLKKFDNHLYESKGSRPLSDEQLHLLEAESGTTYLPDYMAAMY 67078 + PGG AA L + N L + G + +L+ +GT Y+ D +A Sbjct: 23 IAALPGGYAEAAEWLDVTENALFNRL-RADGDQIFPLGWAMILQRAAGTHYIADAVAQSA 81 Query: 67077 GGVFVPIADPSELDNLDLYSRSVKTAVKRGRVDQIIAEALEDGVIDEREVETI 66919 GGVFV + + E++N D+ R ++ + G + I A+EDGV++ E I Sbjct: 82 GGVFVSLPEIEEVENADINQRLLEVIEQIGSYSKQIRSAIEDGVVEPHEQTAI 134 >ref|NP_040813.1|integrase Length = 289 Score = 50.4 bits (119), Expect = 2e-05 Identities = 33/143 (23%), Positives = 74/143 (51%), Gaps = 1/143 (0%) Frame = +3 Query: 8253 TGIRLNALLCLRVQDVDWDRQLILIRGDTEKTHREYQVPIVEGLAPHIRELLDEAKRAGF 8432 +G+R++ L +++ D+D+ ++I + + KT ++ P +I+EL++ + + Sbjct: 141 SGLRVSEALNIKISDMDFKNKVIRVL--SSKTRKQRYAPFSSFSLKYIKELIEVNPKRDY 198 Query: 8433 VPTDQLFNVNRFSRHYRRSEMNTDQVEAMYRKLIEKIGV-RMTPHRFRHTLASDLMRQPE 8609 + F + + N + ++ Y++L + + + R+ HRFR T AS L+ + Sbjct: 199 L----------FYNFIKDRQTNKNDIKLFYKRLKKHLNLERIHTHRFRKTFASILI-ENG 247 Query: 8610 RNIHLTKSLLNHSNIATTMGYIE 8678 NI + + +HS I TT+ Y++ Sbjct: 248 LNIDDLQKIFDHSRIETTIKYVQ 270 >ref|NP_852561.1|DNA integration Length = 369 Score = 50.1 bits (118), Expect = 3e-05 Identities = 63/308 (20%), Positives = 124/308 (40%), Gaps = 19/308 (6%) Frame = +3 Query: 7860 KTIYRAATKALTRHFGTTIDVQTIDRRSILSWRS---KVLAKGLAKRSWNTYSTHLRTIW 8030 K+ + + +H +I + T+ + +++ + + KG+A S L++ Sbjct: 82 KSTFAGYKAFINQHVIPSIGMVTLHKLNVIHIQKCYKTAIDKGIANNSILLMHRILKSAL 141 Query: 8031 GYAIEYGLLPQQPNPFKKTAVRPPKRASKTVASDAIHRARRWLDSLVDEERCTGRRSKIT 8210 A++ ++ + P F + PK+ + + +++L + G IT Sbjct: 142 NLAVKQNIISRNPADFAEI----PKKEKTPIQTWTEEEVKKFLAHSQESRYHIGYLLAIT 197 Query: 8211 PAWFWLATFEMFYYTGIRLNALLCLRVQDVDWDRQLILIR------------GDTEKTHR 8354 TG+RL +L LR QD+D+++ + I T + R Sbjct: 198 --------------TGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243 Query: 8355 EYQVP--IVEGLAPHIRELLDEAKRAGFVPTDQ-LFNVNRFSRHYRRSEMNTDQVEAMYR 8525 VP + L H + E R G DQ L N N F R +R+ + Sbjct: 244 TIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKS-----FI 298 Query: 8526 KLIEKIGVR-MTPHRFRHTLASDLMRQPERNIHLTKSLLNHSNIATTMGYIEVDYDHMRE 8702 ++ K+G++ + H RHT A+ L++Q N + L H++I+ T+ Y H+ Sbjct: 299 RMTHKVGIKEIKFHDLRHTHATLLLKQGV-NPKIISERLGHTDISMTLSV----YSHVLP 353 Query: 8703 VLHERSLQ 8726 + E +++ Sbjct: 354 NMQEEAVK 361 >ref|NP_817766.1|gp5 Length = 237 Score = 48.5 bits (114), Expect = 9e-05 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 12/113 (10%) Frame = -1 Query: 10928 QETLRITEIFH-SLQGETRTAGLPTVFVRLTGCPLRCGYCDTAYAFSG--------GAVL 10776 + L ++E+F +LQGE AG+ F+RL GC L C +CDT Y + +L Sbjct: 5 RSVLPVSELFGPTLQGEGPYAGVTVQFLRLMGCNLSCSWCDTPYTWDAREHDLNAETTLL 64 Query: 10775 PLSVILERVASYGPRYVCVTGGEPLAQPNSIELLRLLCDA---GYEVSLETSG 10626 I++ + P + ++GGEPL +L A G EV +ET+G Sbjct: 65 AWPDIVDALLPDTP--LVISGGEPLLHQKHSAFQAVLQHAWRKGCEVHIETNG 115 >ref|YP_164054.1|transcriptional regulator Length = 136 Score = 45.4 bits (106), Expect = 8e-04 Identities = 25/72 (34%), Positives = 41/72 (56%) Frame = +1 Query: 68194 LDQRHYGQRIAEERERLGFTQAEFATLLGIGIKKGRAIEQGSQRPLTTQLMPYLALQRVD 68373 + ++ G+R+ ERERLG+TQ EFA ++G + EQG P L + A + ++ Sbjct: 1 MTEKSLGERLRAERERLGYTQTEFAEIVGASKRTQIGWEQGRTAPDALALAAW-ANEGLN 59 Query: 68374 MNYVLIGKRIQR 68409 + +V+ GKR R Sbjct: 60 VEFVVSGKRSDR 71 Score = 37.0 bits (84), Expect = 0.28 Identities = 28/111 (25%), Positives = 57/111 (51%) Frame = +2 Query: 67682 TKMSASKRLRAVLDLRGLSIKDAAELCEIPYRTLQNYLLDERDPNAKSLVAIGTKLGISI 67861 T+ S +RLRA + G + + AE+ RT + P+A +L A + G+++ Sbjct: 2 TEKSLGERLRAERERLGYTQTEFAEIVGASKRTQIGWEQGRTAPDALALAAWANE-GLNV 60 Query: 67862 DWLLTGDGPMQRGEEVSTPTQQASISSEISPREQAILELFRALDEDAQREI 68014 +++++G +R + + P E+ P EQ +LE++RA+ ++E+ Sbjct: 61 EFVVSG----KRSDRPAGP--------ELPPDEQLLLEVYRAMSAAKRKEL 99 >ref|NP_490636.1|hypothetical protein Length = 77 Score = 44.7 bits (104), Expect = 0.001 Identities = 24/70 (34%), Positives = 33/70 (47%) Frame = -1 Query: 65000 MENAVVIRLSLEPKQAEALLLHLREQFRQGLQARWYADRYRLVPDAARSGAILHDCPCLA 64821 M + I + ++ QAE LL L Q+ + WY DRYR P R IL D P +A Sbjct: 1 MSGHISITVEVDQNQAEKYLLWLVSQYEAAMAECWYDDRYRYTPQGLRGKRILEDRPHIA 60 Query: 64820 AQKKALGALR 64791 + + LR Sbjct: 61 GICRTIRELR 70 >ref|YP_024717.1|gp44 Length = 846 Score = 44.3 bits (103), Expect = 0.002 Identities = 16/35 (45%), Positives = 27/35 (77%) Frame = -2 Query: 75100 IVFAGRALLLNPIGLTISALALAGMALLKYWQPVK 74996 +++ GRAL+LNPIG+ I+A+A+ + +YW P+K Sbjct: 622 VLWLGRALMLNPIGIAITAIAVGAYLIYRYWTPIK 656 >ref|NP_075512.2|hypothetical protein Length = 2067 Score = 43.9 bits (102), Expect = 0.002 Identities = 38/192 (19%), Positives = 95/192 (49%), Gaps = 5/192 (2%) Frame = -2 Query: 77347 QDQLKALNQQQRDLSGYRQTNVE-IARQTKAIQALQARTREHTQLLEKQRAVHVNLKGNL 77171 Q+ +K L +Q ++ + N+ + K+++ QAR + L+ Q+ ++ ++ L Sbjct: 20 QEGMKGLKRQLGVVNSEMKANLSAFDKSEKSMEKYQARIKGLNDRLKVQKKMYSQVEDEL 79 Query: 77170 KAAQTQYNKLAKALIEGKGETASFHFELEKAQIKLQSAQQ----AFNRSSSTIKTYKDRI 77003 K Y K AK+ ++ ++EKA +KL A + A ++S +K+ + Sbjct: 80 KQVNANYQK-AKSSVK----------DVEKAYLKLVEANKKEKLALDKSKEALKSSNTEL 128 Query: 77002 RQADSQLAQLGSQQQNSQERLAGYKRRLDEAGIGTERLGSRARQLRGEQERLNAVLEAQK 76823 ++A++Q + ++Q++ ++L ++L +A ++L + + + +R + ++ Q Sbjct: 129 KKAENQYKRTNQRKQDAYQKL----KQLRDA---EQKLKNSNQATTAQLKRASDAVQKQS 181 Query: 76822 ARLAAVTAQQER 76787 A+ A+ Q ++ Sbjct: 182 AKHKALVEQYKQ 193 >ref|NP_803346.1|tail fiber protein Length = 2066 Score = 43.9 bits (102), Expect = 0.002 Identities = 38/192 (19%), Positives = 95/192 (49%), Gaps = 5/192 (2%) Frame = -2 Query: 77347 QDQLKALNQQQRDLSGYRQTNVE-IARQTKAIQALQARTREHTQLLEKQRAVHVNLKGNL 77171 Q+ +K L +Q ++ + N+ + K+++ QAR + L+ Q+ ++ ++ L Sbjct: 20 QEGMKGLKRQLGVVNSEMKANLSAFDKSEKSMEKYQARIKGLNDRLKVQKKMYSQVEDEL 79 Query: 77170 KAAQTQYNKLAKALIEGKGETASFHFELEKAQIKLQSAQQ----AFNRSSSTIKTYKDRI 77003 K Y K AK+ ++ ++EKA +KL A + A ++S +K+ + Sbjct: 80 KQVNANYQK-AKSSVK----------DVEKAYLKLVEANKKEKLALDKSKEALKSSNTEL 128 Query: 77002 RQADSQLAQLGSQQQNSQERLAGYKRRLDEAGIGTERLGSRARQLRGEQERLNAVLEAQK 76823 ++A++Q + ++Q++ ++L ++L +A ++L + + + +R + ++ Q Sbjct: 129 KKAENQYKRTNQRKQDAYQKL----KQLRDA---EQKLKNSNQATTAQLKRASDAVQKQS 181 Query: 76822 ARLAAVTAQQER 76787 A+ A+ Q ++ Sbjct: 182 AKHKALVEQYKQ 193 >ref|NP_817710.1|gp32 Length = 169 Score = 43.9 bits (102), Expect = 0.002 Identities = 33/86 (38%), Positives = 39/86 (45%), Gaps = 5/86 (5%) Frame = -2 Query: 70765 IPFGVDGITVGIGGKSKPKILINDSISVTRKKFTLAHEIGHIVIPWHTG-----TIVSHI 70601 +P V G V S P I +N S R++FT AHE+GH G T V Sbjct: 48 LPADVSGYIVKRSPNSAPDIFLNSEHSPVRQRFTCAHELGHYFAILGKGENAPDTYVFKR 107 Query: 70600 DSGEVSSAYLQMEAEANRFAAELLMP 70523 D G S E AN+FAA LLMP Sbjct: 108 D-GLASCGIDGSEIYANQFAANLLMP 132 >ref|YP_025041.1|putative transposase B Length = 280 Score = 42.4 bits (98), Expect = 0.007 Identities = 22/65 (33%), Positives = 35/65 (53%) Frame = -2 Query: 730 MCRVLGIARSGYYAWCSRTLSKRRQQQTQLDRLVAQAYHERKGRSGAPRLCLDLKASGLP 551 MCR+LG++R+ YY + S SKRR + L + + + + E K R G ++ +L P Sbjct: 1 MCRILGVSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQP 60 Query: 550 C*RRC 536 RC Sbjct: 61 LQLRC 65 >ref|YP_024713.1|gp40 Length = 174 Score = 41.6 bits (96), Expect = 0.011 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 4/152 (2%) Frame = -2 Query: 78394 ARTITLPPLARKMESYRGGGMNGPVKVDQGMSDDGIQLEWTLGGLDLVVLRQFGATTADA 78215 A I LP + M ++ GM G V++ G+ +++W D+ A A Sbjct: 26 AEEIKLPDIQAIMAEHKALGMIGKVELPGGLDKLEGEIKWNSLYADVAKAM---ANPFKA 82 Query: 78214 VLLRFAGSYQ----RDDTAEISAVEVVVRGRHEEINLGDAEPGEDTEVSIVTTCSYYKLI 78047 V L+ + + + E+S V + ++ LG + E+ + S +Y K + Sbjct: 83 VPLQCRSNIETYGAQGRVREVSLVTYLTV-MFKKNPLGTYKQHENADFSSAFGATYIKQV 141 Query: 78046 VDGNTEIEIDLLNMIEIVNGVDMLAAQRAAIG 77951 +DG +E+D L I V G DMLA RA IG Sbjct: 142 IDGEEVLELDYLANIFRVGGEDMLADFRANIG 173 >ref|NP_852540.1|hypothetical protein Length = 1215 Score = 41.6 bits (96), Expect = 0.011 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 5/172 (2%) Frame = -2 Query: 76216 LAPLLVMMDQAGMSGESAGNALRNVFQSGFKTDKVAKANKMLKKLGISLDFTDGKGEFGG 76037 LA + +M +G+ GE+AG ALR K K A AN+ LK+LG+S+ TD +G Sbjct: 160 LAASVGIMSNSGIKGETAGTALRASLLRLVKPPKTA-ANE-LKRLGVSI--TDQQGNMKP 215 Query: 76036 LEKLFA-XXXXXXXXXXXXXTAVISEIFGDDSQNLQVLNTLIDKGLDGYREV-EAKMKAQ 75863 L ++ A ++ IFG ++ + + L+ G + + ++ +K+ Sbjct: 216 LSQIIGELKSGMEGMTSAQKGAALATIFGTEA--VSGMMALVAAGPEKIEALTQSLVKSD 273 Query: 75862 ADLRKRVDDQLKTLTNVIDAAQGSWTNAMAEFGAAVAPEL---KGLIQWLGN 75716 +K D L+ + + S A F A+AP L G+++ L N Sbjct: 274 GASKKAADSMLEGWAGALTKMESSLDAAARAFTDALAPALMAVAGVVETLAN 325 >ref|YP_164268.1|hypothetical protein Length = 68 Score = 41.2 bits (95), Expect = 0.015 Identities = 21/42 (50%), Positives = 23/42 (54%) Frame = +3 Query: 55254 CAATNWTSWPPASTAWPKSCSTPRRRCRTASTRPPRTCARTW 55379 CAA W WPP++T WP S ST RC T PRT R W Sbjct: 28 CAARCWRKWPPSAT-WPPS-STCSPRCWAWPTPSPRTAVRWW 67 >ref|NP_510895.1|similar to phage phi 11 integrase Length = 349 Score = 41.2 bits (95), Expect = 0.015 Identities = 65/307 (21%), Positives = 113/307 (36%), Gaps = 17/307 (5%) Frame = +3 Query: 7827 YIDDHELRPASKTIYRAATKALTRHFGTT---IDVQTIDRRSILSWRSKVLAKGLAKRSW 7997 Y+++ +LRP +K R +HF I + I + +R ++ + S Sbjct: 67 YLENSDLRPKTK---RRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIENVASTNSA 123 Query: 7998 NTYSTHLRTIWGYAIEYGLLPQQPNPFKKTAVRPPKRASKTVASDAIHRARRWLDSLVDE 8177 T + + + YA +Y L P T++ I R + ++ E Sbjct: 124 RTIWSGFKVVINYAKKYFGLRTDP----------------TISIKPIPRVKPKPKFMMRE 167 Query: 8178 ERCTGRRSKITPAWFWLATFEMFYYTGIRLNALLCLRVQDVDWDRQLILIRGDTEKTHRE 8357 E +R K + F + +YTG+R+ + L D + ++ I I + ++R Sbjct: 168 E--FEKRIKDIEEQDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRT 225 Query: 8358 YQVPIVEGLAPHIRELLDEAKRAGFVPTDQLFNVNRFSRHYRRSEMNTDQVEAMY----- 8522 + R D ++ VP + N RH R E+N E Y Sbjct: 226 I----------YPRPKTDSSE--DIVPLPKFINTMLTERHQREKELNKYFDERSYFIFGG 273 Query: 8523 ---------RKLIEKIGVRMTPHRFRHTLASDLMRQPERNIHLTKSLLNHSNIATTMGYI 8675 +K +K H RH+ AS L +I + +SL+ H+ I TMG Sbjct: 274 MAPKHYSHVQKKFQKAFPHYNIHALRHSYASYLANNGV-DIFVLQSLMRHAQITETMG-- 330 Query: 8676 EVDYDHM 8696 Y H+ Sbjct: 331 --TYSHL 335 >ref|NP_663639.1|putative cI-like repressor Length = 188 Score = 40.8 bits (94), Expect = 0.019 Identities = 33/149 (22%), Positives = 69/149 (46%), Gaps = 10/149 (6%) Frame = +2 Query: 67664 YVNRWHTKMSASKRLRAVLDLRGLSIKDAAELCEIPYRT----------LQNYLLDERDP 67813 + N++ K ++ RL+ +++ RGL D E + P++ L NY+ + +P Sbjct: 2 FYNKFMKKENSQMRLKKIMNDRGLRQVDILEKSK-PFQDKLGIKMSKTHLSNYINGKSNP 60 Query: 67814 NAKSLVAIGTKLGISIDWLLTGDGPMQRGEEVSTPTQQASISSEISPREQAILELFRALD 67993 + + L+ + LG+S WL+ D PM E S S + + + + L+ Sbjct: 61 DQQKLILLSQTLGVSEPWLMGYDVPMIEPRE----------SENDSETIEETITVMKKLE 110 Query: 67994 EDAQREIQDAAAEKKRLRDLEQRFEELAA 68080 E Q+ + D A +L++ E++ ++ + Sbjct: 111 EPRQKIVLDTA--NVQLKEQEEQKSKIVS 137 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 40.8 bits (94), Expect = 0.019 Identities = 63/211 (29%), Positives = 76/211 (36%), Gaps = 41/211 (19%) Frame = +1 Query: 55156 PARGALDQRSAAAHPAGRVAT--ARRPSGNPPAIPAQPRTGRVGRRHQPHGRSHAARPG- 55326 PAR HP R + A P +PP +PRT P H A PG Sbjct: 43 PARDRSPDHPEPDHPCRRAPSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGC 102 Query: 55327 ----GDAEQHRPGHRGRAPE--PGNH----RDPEHRTGHGAPRGPGGEPDQIRIP----- 55461 A ++ P R RAPE G H R P RT P GPG ++R P Sbjct: 103 APAAPAAPEYAPALRPRAPECDRGAHHLRTRAPRTRT-RAVPLGPGA---RVRTPVEDRR 158 Query: 55462 RQHEPRDPHPAER---------HHR--FHQPVAEMRADAPP----ARLPEH--HPE---- 55578 R R P P R H R + +R A P AR P HPE Sbjct: 159 RTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRA 218 Query: 55579 --VRRQSARHHQRDPRLLEDRGRQAGSRTHP 55665 RR++ R H+R L R R R+ P Sbjct: 219 VRPRRRTGRRHRRRASL---RPRHRRHRSTP 246 >ref|NP_049403.2|putative tail component protein Length = 1656 Score = 39.7 bits (91), Expect = 0.043 Identities = 44/192 (22%), Positives = 71/192 (36%) Frame = -2 Query: 77371 LAQAMKASQDQLKALNQQQRDLSGYRQTNVEIARQTKAIQALQARTREHTQLLEKQRAVH 77192 L Q + +S + KA Q R Y A Q K L + Q +EK + Sbjct: 26 LTQLVNSSTNAWKAQESQMRSAGDYLG-----AAQAK-YDGLGNSIQNQQQKIEKLKQEQ 79 Query: 77191 VNLKGNLKAAQTQYNKLAKALIEGKGETASFHFELEKAQIKLQSAQQAFNRSSSTIKTYK 77012 LKGN QY K + ++++A +L + + ++ ++ +K Sbjct: 80 SQLKGNTVEVAEQYLK--------------YQQQIDQATTRLAALENQQRQAKQSLDYHK 125 Query: 77011 DRIRQADSQLAQLGSQQQNSQERLAGYKRRLDEAGIGTERLGSRARQLRGEQERLNAVLE 76832 S LA+L + + E Y +RL G E + +Q +G LN E Sbjct: 126 -------SGLAELQKEYKAQNEASDTYIKRLKAEGKEDEARQEQLKQYKGSIANLNKQYE 178 Query: 76831 AQKARLAAVTAQ 76796 QK L + Q Sbjct: 179 TQKEMLERIATQ 190 >ref|YP_024676.1|gp03 Length = 134 Score = 39.3 bits (90), Expect = 0.057 Identities = 23/70 (32%), Positives = 37/70 (52%) Frame = -2 Query: 61567 IKRYVVEDKWGGDYSVTLEVDHGILTEERAQQINGFWSGDDYRLDEESGDVVMAVIRLAG 61388 IK+YV+ + Y + ++VDH ILTEE+ ++ FWS D D E + A ++L Sbjct: 25 IKKYVLTHDFS--YEIVVDVDHNILTEEKLCELVRFWSEGD--ADIERHGPLQAFLKLFA 80 Query: 61387 ATLIRVMFEQ 61358 A + E+ Sbjct: 81 ARFLAATVEE 90 >ref|NP_690786.1|ORF2 Length = 148 Score = 39.3 bits (90), Expect = 0.057 Identities = 24/79 (30%), Positives = 40/79 (50%) Frame = -2 Query: 70723 KSKPKILINDSISVTRKKFTLAHEIGHIVIPWHTGTIVSHIDSGEVSSAYLQMEAEANRF 70544 K I+IN +++ + F +HE+GH + H + + S + E EAN F Sbjct: 46 KRNKYIVINSNLNQAERTFVCSHELGHAQL--HPRANTPFMKERTLFSVD-KYEVEANTF 102 Query: 70543 AAELLMPTSWLVDMFQKSE 70487 A ELL+P W+V ++ +E Sbjct: 103 AVELLLP-DWVVSQYKNTE 120 >ref|NP_612875.1|putative recombinase Length = 181 Score = 38.9 bits (89), Expect = 0.074 Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 1/146 (0%) Frame = +3 Query: 8250 YTGIRLNALLCLRVQDVDWDRQLILIRGDTEKTHREYQVPIVEGLAPHIRELLDEAKRAG 8429 Y+G+R++ +L LRV+DV Q+ + +KT ++ PI L +++ + + Sbjct: 36 YSGLRISDILRLRVRDVKGKEQIAI---REKKTGKQKMFPINPILKKELKKYCSDKELDE 92 Query: 8430 FVPTDQLFNVNRFSRHYRRSEMNTDQVEAMYRKLIEKIGV-RMTPHRFRHTLASDLMRQP 8606 F+ + + N ++R R T + R+ E++G+ + H R T Q Sbjct: 93 FL----IKSRNGYNRAIGRERAYT-----ILREAGEELGIYNLATHTLRKTFGYHYYMQY 143 Query: 8607 ERNIHLTKSLLNHSNIATTMGYIEVD 8684 L K + NHS+ A T+ YI V+ Sbjct: 144 NDIAELQK-IFNHSDPAVTLRYIGVE 168 >ref|NP_463477.1|putative tape-measure protein Length = 1794 Score = 38.9 bits (89), Expect = 0.074 Identities = 21/60 (35%), Positives = 28/60 (46%) Frame = -2 Query: 74734 AGKMFGFGVDIVKGLINGILSMKNXXXXXXXXXXXXXXXLFSKDQEIHSPSRVWAQLGNY 74555 A M+ G++ KGLING+ S K K +IHSPSRV +LG + Sbjct: 1614 ANAMYSAGINAAKGLINGLNSQKKQLEKTAKSIASTITNSVKKALKIHSPSRVAIELGKF 1673 >ref|NP_038334.1|ORF33 Length = 1554 Score = 38.5 bits (88), Expect = 0.097 Identities = 49/206 (23%), Positives = 76/206 (36%), Gaps = 35/206 (16%) Frame = -2 Query: 77371 LAQAMKASQDQLKALNQQQRDLSGYRQTNVEIARQTKAIQALQARTREHTQLLEKQRAVH 77192 L Q + +S + KA Q R Y A Q K L + Q +EK + Sbjct: 26 LTQLVNSSTNAWKAQESQMRSAGDYLG-----AAQAK-YDGLGNSIQNQQQKIEKLKQEQ 79 Query: 77191 VNLKGNLKAAQTQYNKLAK---------ALIEGKGETASFHFELEKAQI-KLQSAQQAFN 77042 LKGN QY K + A +E + A + +K+ + LQ A + N Sbjct: 80 SQLKGNTVEVAEQYLKYQQQIDQATTRLAALENQQRQAKQSLDYQKSGLADLQKAYKLQN 139 Query: 77041 RSSSTI-----------KTYKDRIRQADSQLAQLGSQQQNSQERLAG------------- 76934 SS T K +++++Q ++ +A L Q + +E L Sbjct: 140 ESSETYVKRLQAEGKEDKARQEQLKQYNNSIANLSKQYEKQKEMLERVAKQTSKTSEEYL 199 Query: 76933 -YKRRLDEAGIGTERLGSRARQLRGE 76859 K+RLDE I + A +L E Sbjct: 200 IQKKRLDETAISMAHAKNAADKLNNE 225 >ref|NP_112667.1|CI Length = 180 Score = 38.5 bits (88), Expect = 0.097 Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 19/151 (12%) Frame = +2 Query: 67685 KMSASKRLRAVLDLRGLSIKDAAELCEIPYR----------TLQNYLLDERDPNAKSLVA 67834 K S RL+ ++ R L D L IP++ TL Y+ + P+ + Sbjct: 2 KTDTSNRLKQIMAERNLKQVDILNL-SIPFQKKFGIKLSKSTLSQYVNSVQSPDQNRIYL 60 Query: 67835 IGTKLGISIDWLLTGDGPMQRGEEVSTPTQQASISSEI-----SPREQAILEL--FRALD 67993 + LG+S WL+ D PM ++ ++ + + PR++ +L+ + + Sbjct: 61 LAKTLGVSEAWLMGFDVPMVESSKIENDSENIEETITVMKKLEEPRQKVVLDTAKIQLKE 120 Query: 67994 EDAQREIQDAAAEKKRLRD--LEQRFEELAA 68080 +D Q +++ E RL D LE++ + +A Sbjct: 121 QDEQNKVKQ--IEDYRLSDEYLEEQISKASA 149 >ref|NP_861696.1|gp39.2 conserved hypothetical protein Length = 59 Score = 38.1 bits (87), Expect = 0.13 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Frame = -2 Query: 21952 MPIYEYQCAA--CGHQLETIQKFSDAPLTDCPNCQAPELEKLLSVPGFRLKGGGWYE 21788 MP+Y+Y+C + CGH+ E I++ S+ CP C + +S P + GG+Y+ Sbjct: 1 MPLYDYKCQSEDCGHEYEKIKRISERENDVCPECHRLSTRR-VSAP--KHVNGGFYD 54 >ref|NP_076576.1|repressor Length = 180 Score = 37.7 bits (86), Expect = 0.16 Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 17/149 (11%) Frame = +2 Query: 67685 KMSASKRLRAVLDLRGLSIKDAAELCEIPYR----------TLQNYLLDERDPNAKSLVA 67834 K S RL+ ++ R L D L IP++ TL Y+ + P+ + Sbjct: 2 KTDTSNRLKQIMAERNLKQVDILNL-SIPFQKKFGIKLSKSTLSQYVNSVQSPDQNRIYL 60 Query: 67835 IGTKLGISIDWLLTGDGPMQRGEEVSTPTQQASISSEI-----SPREQAILELFRALDED 67999 + LG+S WL+ D PM ++ ++ + + PR++ +L+ ++ Sbjct: 61 LAKTLGVSEAWLMGFDVPMVESSKIENDSETIEETITVMKKLEEPRQKVVLDTANIQLKE 120 Query: 68000 AQREIQDAAAEKKRLRD--LEQRFEELAA 68080 + + + E RL D LE++ + +A Sbjct: 121 QEEQNKVKQIEDYRLSDEYLEEQISKASA 149 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 37.4 bits (85), Expect = 0.22 Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 3/201 (1%) Frame = -2 Query: 77359 MKASQDQLKALNQQQRDLSGYRQTNVEIARQTKAIQALQAR-TREHTQLLEKQRAVHVNL 77183 +K Q+K + QQQ++ Y + E + K +Q + T E +KQ+ ++ L Sbjct: 1871 VKYYSKQIKLIQQQQKEAKKYIKQLEEQKKAAKGFPDIQEQITEEMQNWKDKQKDFNLEL 1930 Query: 77182 KGNLKAAQTQYNKLAKALIEGKGETASFHFEL--EKAQIKLQSAQQAFNRSSSTIKTYKD 77009 K+ + Y LA E S + E+ + I+L++ Q+A I D Sbjct: 1931 YNTKKSIKDIYKSLA-------DEVVSIYKEMYEKMRDIELEAHQKATQDLIDEIDKTDD 1983 Query: 77008 RIRQADSQLAQLGSQQQNSQERLAGYKRRLDEAGIGTERLGSRARQLRGEQERLNAVLEA 76829 + +L + Q +++ Y LD++ G ++ QL+ EQ L+ L+ Sbjct: 1984 EAK-FQKELKERQDSIQKLTDQINQYS--LDDSEFGKSKVKELTEQLQKEQLDLDDFLKD 2040 Query: 76828 QKARLAAVTAQQERLTKAQKS 76766 +++ A Q++L K ++S Sbjct: 2041 RESN-KRKEALQDQLEKDEES 2060 >ref|NP_945096.1|gp65 Length = 146 Score = 37.4 bits (85), Expect = 0.22 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Frame = -3 Query: 67269 ASAIVCGYPGGRECAAARLGMPLKKFDNHLYESKGSRPLSDEQLHLLEAESGTTYLPDYM 67090 A A+ YPGG E A RLG+ + + + G+ L+ ++ + + + + Sbjct: 7 AHAVAHNYPGGCESLAPRLGVSPAVLRSKVNPNTGTHKLTLQEAVRIGEVTDNDAILEAW 66 Query: 67089 AAMYGGVFVPIADPSELDNLD--LYSRSVKTAVKRGRVDQIIAEALEDGVIDEREVETI 66919 A G V + PS +D D + K G V Q I + LEDG ++ E+E + Sbjct: 67 AGERGYALVKL--PSAVDCCDAAIVELMGKAWSTHGDVGQEIVKTLEDGRVERHEIERV 123 >ref|NP_543053.1|putative integrase Length = 437 Score = 37.0 bits (84), Expect = 0.28 Identities = 46/220 (20%), Positives = 92/220 (41%), Gaps = 14/220 (6%) Frame = +3 Query: 7800 MTPQELAQAYIDDHELRPASKTI--YRAATKALTRHFGTTIDVQTIDRRSIL-------- 7949 +T +EL + ++D + ++ Y + + + G + V T+ + +L Sbjct: 82 ITVKELEKKWLDLKRMEISANAFNRYESVARTMIPKIGGSRLVSTVTKEELLYIRKDLLT 141 Query: 7950 ----SWRSKVLAKGLAKRSWNTYSTHLRTIWGYAIEYGLLPQQPNPFKKTAVRPPKRASK 8117 S + K A+G + + N Y T + ++ +A ++G L + NPF+ ++P K+A Sbjct: 142 GYQNSTKDKAPARGRSVVTVNYYMTTIAGMFQFAADHGYL--EANPFE--GIKPLKKARA 197 Query: 8118 TVASDAIHRARRWLDSLVDEERCTGRRSKITPAWFWLATFEMFYYTGIRLNALLCLRVQD 8297 R +D+ C +++K + + YTG+R L+ L +D Sbjct: 198 EPDPLTRDEFIRLIDA------CRHQQTK--------NLWSLAVYTGMRHGELVSLAWED 243 Query: 8298 VDWDRQLILIRGDTEKTHREYQVPIVEGLAPHIRELLDEA 8417 +D I IR + K E+ +P E + L+ A Sbjct: 244 IDLKAGTITIRRNYTKL-GEFTLPKTEASTNRVVHLIQPA 282 >ref|NP_438114.1|integrase-like protein Length = 365 Score = 36.6 bits (83), Expect = 0.37 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 1/145 (0%) Frame = +3 Query: 8235 FEMFYYTGIRLNALLCLRVQDVDWDRQLILIRGDTEKTHREYQVPIVEGLAPHIRELLDE 8414 + + Y G R+ L+ L+ D D+ I I T + V + + R + + Sbjct: 199 YRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIAYTKEGWAVQSPKTKKSN-RTISMD 257 Query: 8415 AKRAGFVPTDQLFNVNRFSRHYRRSEMNTDQVEAMYRKLIEKIGV-RMTPHRFRHTLASD 8591 A+ ++ ++ +D V + I K G+ R+TPH FRHT AS Sbjct: 258 AETMSLAKLYIKQSIKPLHGSFKLFNFASDTVRKRLDRFILKHGLKRITPHGFRHTHAS- 316 Query: 8592 LMRQPERNIHLTKSLLNHSNIATTM 8666 L+ + + + L H+ IA TM Sbjct: 317 LLFEAGIPAKIAQERLGHAKIAITM 341 >ref|NP_795541.1|putative integrase Length = 384 Score = 36.6 bits (83), Expect = 0.37 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 1/145 (0%) Frame = +3 Query: 8235 FEMFYYTGIRLNALLCLRVQDVDWDRQLILIRGDTEKTHREYQVPIVEGLAPHIRELLDE 8414 + + Y G R+ L+ L+ D D+ I I T + V + + R + + Sbjct: 218 YRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIAYTKEGWAVQSPKTKKSN-RTISMD 276 Query: 8415 AKRAGFVPTDQLFNVNRFSRHYRRSEMNTDQVEAMYRKLIEKIGV-RMTPHRFRHTLASD 8591 A+ ++ ++ +D V + I K G+ R+TPH FRHT AS Sbjct: 277 AETMSLAKLYIKQSIKPLHGSFKLFNFASDTVRKRLDRFILKHGLKRITPHGFRHTHAS- 335 Query: 8592 LMRQPERNIHLTKSLLNHSNIATTM 8666 L+ + + + L H+ IA TM Sbjct: 336 LLFEAGIPAKIAQERLGHAKIAITM 360 >ref|NP_542287.1|unknown Length = 224 Score = 36.6 bits (83), Expect = 0.37 Identities = 25/91 (27%), Positives = 43/91 (47%) Frame = +2 Query: 37793 TAPVREWESPARASARPIRQATQPSTTPSSRAQSSRDRRVQSKAAPLKSPSSGSAAHSRA 37972 T P R SP R++A P + S P+SR+ RR++SK + + P+ S+ Sbjct: 37 TRPERRCASPTRSAASPTFRRWTRSAWPTSRS-----RRLRSKISSARGPAQRSSKRRLP 91 Query: 37973 TAQSCSRQAANCGRSQACTKVSSQMAKNRRI 38065 + + S+ +A R+++ S A RI Sbjct: 92 SIAAWSKHSARSQRARSLPSKSLATAPQHRI 122 >ref|NP_958565.1|putative protein Length = 92 Score = 36.6 bits (83), Expect = 0.37 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = +2 Query: 67700 KRLRAVLDLRGLSIKDAAELCEIPYRTLQNYLLDERDPNAKSLVAIGTKLGISIDWL 67870 +R+ VL ++ +S+K + + Y L+NY +P K++ I LG+S+D L Sbjct: 25 QRVEEVLQIKNISLKSLSIKSGLNYENLRNYRYKHYEPTFKTMCKIADALGVSLDEL 81 >ref|NP_918983.1|putative tail fiber protein Length = 830 Score = 36.6 bits (83), Expect = 0.37 Identities = 54/242 (22%), Positives = 96/242 (39%), Gaps = 13/242 (5%) Frame = -2 Query: 77458 ARDLSLQVRLSA---IDRITAPLRRIVQGSGALAQAMKASQDQLKALNQQQRDLSGYRQT 77288 A+D+S Q A ID +T+ L V+ + A + +L+ QQ++LS Sbjct: 15 AKDMSAQAMKDAKKAIDEVTSSLADQVKQAKAATAGTDSLGKAAASLSDQQKNLSKAADA 74 Query: 77287 NVEIARQTKAIQALQARTREHTQLLEKQRAVHVNL---KGNLKAAQTQYNKLAKALIEGK 77117 V+ A A QA+TR + + NL K +++ A Y A+ + Sbjct: 75 -VQKAMSGAADALDQAKTRAGA-ASQAFNTANENLDRHKRSVEGAAIAYQMFARDALNAG 132 Query: 77116 GETASFHFELEKAQIKLQSAQQAFNRSSSTIKTYKDRIRQADSQ-------LAQLGSQQQ 76958 T S EL+K + F R + + ++ A+++ +A+L + Sbjct: 133 PPTRSTARELDKLAAAAAGGGRDFERLTQRVAKAGQDVQAANARTASLTKSMAELSGLEA 192 Query: 76957 NSQERLAGYKRRLDEAGIGTERLGSRARQLRGEQERLNAVLEAQKARLAAVTAQQERLTK 76778 E+ + +++ T+ + A +L Q+R A A A +AA Q R Sbjct: 193 QVAEQAEQVAKAMNQQAQATQAAAAAADRLNARQDRARA---AGAAIVAAGREQAAREAA 249 Query: 76777 AQ 76772 AQ Sbjct: 250 AQ 251 >ref|NP_818160.1|gp87 Length = 1237 Score = 36.2 bits (82), Expect = 0.48 Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Frame = +1 Query: 7060 DEGAAAPAAETVCPVPDEPIAAGAQQPCPPE---SLAPPPRKA-VQPAPAEASRIGTA-- 7221 D+G AA AA P AAG+ PP S+APPP A ++ PAE + + TA Sbjct: 534 DQGDAAAAA-----APAAAGAAGSAGAIPPPGSASVAPPPAPAPLENQPAEDALLDTAVQ 588 Query: 7222 ----EVDELLSLYSNITMPLEELNTRPGPTAAPPAITLEQAQDPSETPVGSPAPEYTTTM 7389 +D Y I PL T A AI Q + +E P+ PE T Sbjct: 589 SVTQMIDRETQEYQQIIDPL---------TQALQAIEFAQQVEQAENPLDVTPPEGTVDA 639 Query: 7390 STSS 7401 S ++ Sbjct: 640 SPAA 643 >ref|NP_943898.1|gp44 clamp loader subunit Length = 321 Score = 36.2 bits (82), Expect = 0.48 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%) Frame = -1 Query: 17792 REEQQDRAIRPLRLAEYIGQPVVREQMELFIQAARGRREALDHTLIFGP-PGLGKTTLAN 17616 +E ++ RP ++E I E+ + + R + H L+F PG GKTT+A Sbjct: 9 KEFMWEQKYRPALISECILPSADIERFKGIVTTGR-----IPHILLFSKSPGTGKTTMAR 63 Query: 17615 IIAQEMGVSLKSTSGPVLERPGDL-------AALLTNLESGDVLFVDE-IHRLSPVVEEV 17460 ++ E+ + SG L R DL A+ +T G V+ +DE ++ V E Sbjct: 64 VLCNEIDAEVMFISGGKL-RIDDLRNDLTAFASTMTRKPGGKVIIIDEGDNKGMKAVHEE 122 Query: 17459 LYPAMEDF 17436 L ME F Sbjct: 123 LRSWMEAF 130 >ref|NP_943879.1|membrane integrity protector Length = 732 Score = 36.2 bits (82), Expect = 0.48 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%) Frame = +2 Query: 55799 RQVLTNLISNAIKFTNEGTIAVRAMVEDIGEEF-------AQLRISVHDTGIGLSQEDLN 55957 R ++ L NA+ +G IA++ ++ + F + SV D GIGLS+ED+ Sbjct: 43 RAIIRELCCNAV----DGHIALKRTGVEVSKTFDVTLPSMLNQQFSVRDYGIGLSEEDVT 98 Query: 55958 ALF-QAFSQADNSLTRQAGGTGLG 56026 L+ F+ ++ + GG GLG Sbjct: 99 GLYCTYFASTKSNSNDEIGGFGLG 122 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 357,364,503 Number of Sequences: 14420 Number of extensions: 7441943 Number of successful extensions: 28991 Number of sequences better than 0.5: 116 Number of HSP's better than 0.5 without gapping: 8804 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 28830 length of database: 3,019,461 effective HSP length: 119 effective length of database: 1,303,481 effective search space used: 33906147772 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig44 (95,071 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 147 2e-34 ref|NP_899581.1|gp5 55 2e-06 ref|NP_040730.1|pre-neck appendage protein 53 4e-06 ref|NP_690646.1|pre-neck appendage protein 51 2e-05 ref|NP_049757.1|gp5 baseplate hub subunit and tail lysozyme 49 6e-05 ref|NP_996646.1|hypothetical protein predicted by GeneMark 46 5e-04 ref|NP_861854.1|gp5 baseplate hub subunit and tail lysozyme 44 0.002 ref|NP_891705.1|baseplate hub subunit and tail lysozyme 44 0.004 ref|NP_046572.1|ABC transporter 42 0.010 ref|NP_075290.1|gp23 40 0.030 ref|NP_932493.1|baseplate hub subunit and tail lysozyme 40 0.030 ref|NP_945089.1|gp58 39 0.088 ref|NP_944921.1|putative tail fiber protein GP37 39 0.088 ref|NP_046674.1|similar to Bacillus subtilis YclG 37 0.26 ref|YP_006601.1|Gp21 37 0.26 ref|NP_943809.1|gp31 37 0.33 ref|NP_620626.1|putative transposase 37 0.44 ref|NP_958267.1|hypothetical protein 37 0.44 >ref|NP_945090.1|gp59 Length = 429 Score = 147 bits (370), Expect = 2e-34 Identities = 117/431 (27%), Positives = 191/431 (44%), Gaps = 10/431 (2%) Frame = -2 Query: 94284 SSSAPVARPLTRSDLKTLSLSAL--GGALEFYDFIIFVFFATVVGKLFFPAEMPDWLRQL 94111 S+ A A P SD ++ A+ G E++DFI + FF+ ++ KLFFP+ D L L Sbjct: 4 STYAREAAPSASSDTHRRAVIAVIVGNGFEWFDFISYSFFSVIIAKLFFPST-DDNLSLL 62 Query: 94110 QTFGIFAAGYLARPLGGIVMAHFGDLLGRKRMFTLSIFMMAVPTLCMGLLPTYAQIGVWA 93931 + G+ RP+GGIV+ D +GR+ T++I +M T +G PTY G+ A Sbjct: 63 LSVSTIGVGFFMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGA 122 Query: 93930 PLALLTLRVVQGAAIGGEVPGAWVFVAEHAPQRHVGFACXXXXXXXXXXXXXXXXXANAI 93751 PL ++ R++QG + GGE+ GA ++ E P G+ A I Sbjct: 123 PLMIVVARLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFI 182 Query: 93750 NRAFSAEELADWAWRLPFLLGGAFGLVSVYLRRWLHETPVFAELQLRQSLAAELPLKAVV 93571 + +++ W WR+PFLLG G V +Y+R L++ A+ +L + P+ VV Sbjct: 183 VKCLDEQQIESWGWRIPFLLGLGLGPVGIYIRSRLNDPGFPADERLGEC----APVVEVV 238 Query: 93570 REHRPAVLLSMLLTWVLSAGIVVIILMTPTLLQTLHGFAAEEALRANGLAILGLTLGCVL 93391 R L+ L + V++ PT + + A + + L Sbjct: 239 RSFSREALVGFGLVVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPL 298 Query: 93390 AGLAADRFG-----AGPTFVCGGXXXXXXXXXXXXXXAGHRDLMLPLYALAGLCVGSI-G 93229 G +D FG AG V G + L++ + GL + S G Sbjct: 299 IGHLSDLFGRRWFLAGALLV--AIVAAYPLFAMLNAAPGLKTLLV-FQVVFGLVIASYEG 355 Query: 93228 AIPMVMVKAFPAAVRFSGLSFSYNLAYAICGGLTPILV--SLLLKWSPLGPAYYVGALCL 93055 I + FP V +G+S SYNLA GG + ++ ++ + L PA+YV A + Sbjct: 356 PILAALSDMFPDGVLSTGISISYNLAVITFGGFSAAIITWAIATTHNNLAPAFYVIAAAI 415 Query: 93054 LFILTGAGLWR 93022 + +++ LW+ Sbjct: 416 VSLIS-VSLWQ 425 >ref|NP_899581.1|gp5 Length = 421 Score = 54.7 bits (130), Expect = 2e-06 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 13/170 (7%) Frame = -3 Query: 62264 FEDKKDAEEVFLQAQKDLKINVLNDSTASVGHDETLTVQNARTRTVKDGDE-------TV 62106 FE + V+++ +L I V+ D+T + T + + VK + T Sbjct: 254 FEIVHKNQNVYIKG--NLNITVVGDATFYCQQNVTQQIDGDLKQHVKGNVDQHVEMNVTQ 311 Query: 62105 TLEKGNRSVTLQTGSDTLDVRDSRTVK------VGSDQTHSTGGDYSHTVTGDYSLTVNG 61944 T++K V Q + T+D+ ++TV V D + GG+ VTGDY+ ++G Sbjct: 312 TVDKDVTQVVHQNVTQTVDMNVTQTVHQNVTQTVDGDVNQTVGGNVQSNVTGDYTQNISG 371 Query: 61943 NLTIKVSGTLTLQSSGDFTARSDLSLTQQAGTSISQKAGTSFANQAGTSL 61794 N TI V G+++ S +T RS S++ G + AG++ + SL Sbjct: 372 NYTITVGGSMSESVSSSYT-RSAASISDDGGGATLNLAGSAALDGTTVSL 420 >ref|NP_040730.1|pre-neck appendage protein Length = 854 Score = 53.1 bits (126), Expect = 4e-06 Identities = 64/261 (24%), Positives = 98/261 (37%), Gaps = 23/261 (8%) Frame = +2 Query: 23558 NVKDFGALGDGVSXXXXXXXXXXXXXXXXXXXXVYLPAGEYRVSGGEEPSDGCLTIKSNV 23737 +VK +GA GDGV+ VY+P G + VS G + + SN Sbjct: 106 SVKTYGAKGDGVTDDIKAFEKAIESGFP-----VYVPYGTFMVSRG-------IKLPSNT 153 Query: 23738 HIVGAGMGETVIKLVDGWEQDVTGMVRSAYGEETSNFGMSDLTLDGNRDNVSAKVDG--- 23908 + GAG VIK +D + + M N +S TLDGN + + G Sbjct: 154 VLTGAGKRNAVIKFMDSVGRGESLMYNENVTTGNENIFLSSFTLDGNNKRLGQGISGIGG 213 Query: 23909 ----------WFNGYIPGQDGADRDVTLERVEIR------EMSGYGFDPHEQTINLTIRD 24040 N YI +D D TL ++I G G + N+ I + Sbjct: 214 SRESNLSIRACHNVYI--RDIEAVDCTLHGIDITCGGLDYPYLGDGTTAPNPSENIWIEN 271 Query: 24041 SVAHDNGLDGFVADY----QVGGVFENNVSYNNDRHGFNIVTSTNDFVLSNNVAYGNGGA 24208 A G DG + + + ++ + +GF I + VLSNN + G G Sbjct: 272 CEATGFGDDGITTHHSQYINILNCYSHDPRLTANCNGFEIDDGSRHVVLSNNRSKGCYGG 331 Query: 24209 GLVVQRGSSDLPHPYDILIDG 24271 + + D P Y+I ++G Sbjct: 332 --IEIKAHGDAPAAYNISVNG 350 Score = 51.2 bits (121), Expect = 2e-05 Identities = 59/228 (25%), Positives = 87/228 (38%), Gaps = 23/228 (10%) Frame = +3 Query: 31407 VYLPAGEYRVSGGEEPSDGALTIKSNVYIVGAGMGETVIKMVDGWTQNVTGMVRSAYGEE 31586 VY+P G + VS G + + SN + GAG VIK +D + + M Sbjct: 134 VYVPYGTFMVSRG-------IKLPSNTVLTGAGKRNAVIKFMDSVGRGESLMYNENVTTG 186 Query: 31587 TSNFGMSDLTLDGNRDNLSAKVDG-------------WFNGYIPGQDGADRDVTLERVEI 31727 N +S TLDGN L + G N YI +D D TL ++I Sbjct: 187 NENIFLSSFTLDGNNKRLGQGISGIGGSRESNLSIRACHNVYI--RDIEAVDCTLHGIDI 244 Query: 31728 R------EMSGYGFDPHEQTINLTIRDSVAHDNGLDGFVADY----QIGGVFENNVSYNN 31877 G G + N+ I + A G DG + I + ++ Sbjct: 245 TCGGLDYPYLGDGTTAPNPSENIWIENCEATGFGDDGITTHHSQYINILNCYSHDPRLTA 304 Query: 31878 DRHGFNIVTSTNDFVLSNNVAYGNGGAGLVVQRGSYDLPHPYDILIDG 32021 + +GF I + VLSNN + G G + G D P Y+I ++G Sbjct: 305 NCNGFEIDDGSRHVVLSNNRSKGCYGGIEIKAHG--DAPAAYNISVNG 350 Score = 48.1 bits (113), Expect = 1e-04 Identities = 63/261 (24%), Positives = 95/261 (36%), Gaps = 23/261 (8%) Frame = +1 Query: 28033 NVKDFGALGDGVSXXXXXXXXXXXXXXXXXXXXVYLPAGEYRVSGGEEPSDGCLTIKSNV 28212 +VK +GA GDGV+ VY+P G + VS G + + SN Sbjct: 106 SVKTYGAKGDGVTDDIKAFEKAIESGFP-----VYVPYGTFMVSRG-------IKLPSNT 153 Query: 28213 HIVGAGMGETVIKLVDGWDQDVTGIVRSAYGEETSNFGMSDLTLDGNRDNTSGKVDG--- 28383 + GAG VIK +D + + + N +S TLDGN + G Sbjct: 154 VLTGAGKRNAVIKFMDSVGRGESLMYNENVTTGNENIFLSSFTLDGNNKRLGQGISGIGG 213 Query: 28384 ----------WFNGYIPGEDGADRDVTLERVEIR------EMSGYGFDPHEQTVNLTIRD 28515 N YI D D TL ++I G G + N+ I + Sbjct: 214 SRESNLSIRACHNVYI--RDIEAVDCTLHGIDITCGGLDYPYLGDGTTAPNPSENIWIEN 271 Query: 28516 SVAHDNGLDGFVAD----FQIGGVFENNVSYNNDRHGFNVVTSTNDFVLSNNVAYGNGGA 28683 A G DG I + ++ + +GF + + VLSNN + G G Sbjct: 272 CEATGFGDDGITTHHSQYINILNCYSHDPRLTANCNGFEIDDGSRHVVLSNNRSKGCYGG 331 Query: 28684 GLVVQRGSSDVAHPYDILIDG 28746 + G + A Y+I ++G Sbjct: 332 IEIKAHGDAPAA--YNISVNG 350 Score = 44.7 bits (104), Expect = 0.002 Identities = 61/260 (23%), Positives = 95/260 (36%), Gaps = 22/260 (8%) Frame = +2 Query: 18722 NVKDFGALGDGVSDDRVXXXXXXXXXXXXXXXTVYLPPGEYRVSAAGEPSDGCLTLRDNV 18901 +VK +GA GDGV+DD VY+P G + VS + L N Sbjct: 106 SVKTYGAKGDGVTDD-----IKAFEKAIESGFPVYVPYGTFMVSRG-------IKLPSNT 153 Query: 18902 YLAGAGMGQTVIKLVDGSAQKITGIVRSPFGEETSNFGMRDLTLDGNRANTVDKVDGWFN 19081 L GAG VIK +D + + + N + TLDGN + G Sbjct: 154 VLTGAGKRNAVIKFMDSVGRGESLMYNENVTTGNENIFLSSFTLDGNNKRLGQGISG-IG 212 Query: 19082 GYAPGQPG--ADRNVTIERVEVREMSGYGFD--------PH--------EQTINLVLRDS 19207 G A NV I +E + + +G D P+ + N+ + + Sbjct: 213 GSRESNLSIRACHNVYIRDIEAVDCTLHGIDITCGGLDYPYLGDGTTAPNPSENIWIENC 272 Query: 19208 VAHHNGLDGFVADY----QIGGTFENNVAYANDRHGFNIVTSTNDFVMRNNVAYGNGGNG 19375 A G DG + I + ++ + +GF I + V+ NN + G G Sbjct: 273 EATGFGDDGITTHHSQYINILNCYSHDPRLTANCNGFEIDDGSRHVVLSNNRSKGCYGGI 332 Query: 19376 LVVQRGSENLAHPENILIDG 19435 + G A+ NI ++G Sbjct: 333 EIKAHGDAPAAY--NISVNG 350 Score = 40.4 bits (93), Expect = 0.030 Identities = 32/117 (27%), Positives = 43/117 (36%) Frame = +3 Query: 33834 NAKDFGALGDGASDDRPXXXXXXXXXXXXXXXTVYLPAGEYRVSPTGDPGDGCLMLKDGV 34013 + K +GA GDG +DD VY+P G + VS + L Sbjct: 106 SVKTYGAKGDGVTDD-----IKAFEKAIESGFPVYVPYGTFMVSRG-------IKLPSNT 153 Query: 34014 YLVGAGMGETVIKLIDGSDQKITGMVRSAYGEETSNFGMSDLTLDGNRDNTSGKVDG 34184 L GAG VIK +D + + M N +S TLDGN + G Sbjct: 154 VLTGAGKRNAVIKFMDSVGRGESLMYNENVTTGNENIFLSSFTLDGNNKRLGQGISG 210 Score = 39.3 bits (90), Expect = 0.067 Identities = 55/233 (23%), Positives = 86/233 (36%), Gaps = 25/233 (10%) Frame = +1 Query: 11476 GGTVYLPSGEYRVSGGDEASDGALIIKSNVYIVGAGMGETVIKLVD--GWDEKLTGIIRS 11649 G VY+P G + VS G + + SN + GAG VIK +D G E L Sbjct: 131 GFPVYVPYGTFMVSRG-------IKLPSNTVLTGAGKRNAVIKFMDSVGRGESLMYNENV 183 Query: 11650 ANGEKTHDYGISDLTIDGNQDNTEGEVDGFYTGYIPGKN---GADYNVTVERVEIREVSR 11820 G + + +S T+DGN + G G N A +NV + +E + + Sbjct: 184 TTGNE--NIFLSSFTLDGNNKRLGQGISGI--GGSRESNLSIRACHNVYIRDIEAVDCTL 239 Query: 11821 YAFD--------PH--------EQTINLTIRDSVAHDNGKDGFVAD----FQIGAVFENN 11940 + D P+ + N+ I + A G DG I + ++ Sbjct: 240 HGIDITCGGLDYPYLGDGTTAPNPSENIWIENCEATGFGDDGITTHHSQYINILNCYSHD 299 Query: 11941 VSYNNGRHGFNIVTSSHDIVFTNNVAYGNGANGLVVQRGSEDRDFVYNVEIEG 12099 +GF I S +V +NN G G + + D YN+ + G Sbjct: 300 PRLTANCNGFEIDDGSRHVVLSNN--RSKGCYGGIEIKAHGDAPAAYNISVNG 350 Score = 37.7 bits (86), Expect = 0.20 Identities = 57/268 (21%), Positives = 94/268 (35%), Gaps = 22/268 (8%) Frame = +3 Query: 21621 NVKDFGALGDGVSXXXXXXXXXXXXXXXXXXXTVYLPAGEYRVSAAGEPGDGCLMLKDGV 21800 +VK +GA GDGV+ VY+P G + VS + L Sbjct: 106 SVKTYGAKGDGVTDDIKAFEKAIESGFP-----VYVPYGTFMVSRG-------IKLPSNT 153 Query: 21801 YLAGAGMGETVIKLIDGSDQKITGMVRSAYGEETSNFGMRDLTLDGNRDNTSGKVDG--- 21971 L GAG VIK +D + + M N + TLDGN + G Sbjct: 154 VLTGAGKRNAVIKFMDSVGRGESLMYNENVTTGNENIFLSSFTLDGNNKRLGQGISGIGG 213 Query: 21972 ----------WFNGYIPGGDGAD-----RDVTIERVEVREMSGYGFDPHEQTINLTIRDS 22106 N YI + D D+T ++ + G G + N+ I + Sbjct: 214 SRESNLSIRACHNVYIRDIEAVDCTLHGIDITCGGLDYPYL-GDGTTAPNPSENIWIENC 272 Query: 22107 VAHDNGLDGFVADYL----VDSVFENNVAYANDRHGFNVVTSTHDFVMTNNVAYGNGSSG 22274 A G DG + + + + ++ + +GF + + V++NN G G Sbjct: 273 EATGFGDDGITTHHSQYINILNCYSHDPRLTANCNGFEIDDGSRHVVLSNN--RSKGCYG 330 Query: 22275 LVVQRGLEDLALPSNILIDGGAYYDNAR 22358 + + D NI ++G ++ R Sbjct: 331 GIEIKAHGDAPAAYNISVNGHMSVEDVR 358 >ref|NP_690646.1|pre-neck appendage protein Length = 860 Score = 50.8 bits (120), Expect = 2e-05 Identities = 64/280 (22%), Positives = 114/280 (40%), Gaps = 5/280 (1%) Frame = +2 Query: 18722 NVKDFGALGDGVSDDRVXXXXXXXXXXXXXXXTVYLPPGEYRVSAAGEPSDGCLTLRDNV 18901 +VK +GA+GDG +DD VY+P G++ VS + + + N Sbjct: 105 SVKTYGAVGDGKTDD-----IEAFEKAIASGYPVYIPNGKFAVSRS-------IKIPSNT 152 Query: 18902 YLAGAGMGQTVIKLVDGSAQKITGIVRSPFGEETSNFGMRDLTLDGN-RANTVDKVDGWF 19078 + GAG+ V+ +D + ++ + N + D TLDGN + V+ + Sbjct: 153 VITGAGIDNAVVTFLDSVPLGDSLMINDNYATGNENIYLSDFTLDGNCQRFGVNAIGSGG 212 Query: 19079 NGYAPGQPGADRNVTIERVEVREMSGYGFDPHEQTINLVLR--DSVAHHNGLDGFVADYQ 19252 + + A +NV I R++ + +G D ++ + A + D +++D + Sbjct: 213 SRDSNLSIHASKNVHINRIKSINATLHGIDITCGGLDYPYMGDGTTAPYPSRDIYISDCE 272 Query: 19253 IGGTFENNVAYANDRHGFNIVTSTNDFVMRNNVAYGNGGNGLVVQRGSENLAHPENILID 19432 ++ + N + + +D + NN NG+ + GS ++ NI Sbjct: 273 APSLGDDGITTNNSEYITISNCNCHDPRLLNNC------NGIEIDDGSRHVQLSNNI--- 323 Query: 19433 GGSYYDNGLEGVLVKMSNNV-TVQNADIHGNGSSG-VRVY 19546 N GV VK NV N I+G+ S G VR Y Sbjct: 324 ----SKNCFGGVEVKAHGNVPAAYNVSINGHMSIGDVRSY 359 Score = 48.5 bits (114), Expect = 1e-04 Identities = 59/268 (22%), Positives = 95/268 (35%), Gaps = 30/268 (11%) Frame = +2 Query: 23558 NVKDFGALGDGVSXXXXXXXXXXXXXXXXXXXXVYLPAGEYRVSGGEEPSDGCLTIKSNV 23737 +VK +GA+GDG + VY+P G++ VS + I SN Sbjct: 105 SVKTYGAVGDGKTDDIEAFEKAIASGYP-----VYIPNGKFAVSRS-------IKIPSNT 152 Query: 23738 HIVGAGMGETVIKLVDGWEQDVTGMVRSAYGEETSNFGMSDLTLDGNRDNVSAKVDGWFN 23917 I GAG+ V+ +D + M+ Y N +SD TLDGN G Sbjct: 153 VITGAGIDNAVVTFLDSVPLGDSLMINDNYATGNENIYLSDFTLDGNCQRFGVNAIG--- 209 Query: 23918 GYIPGQDGADRDVTL-----ERVEIREMSGYGFDPHEQTINLTIRDSVAHDNGL------ 24064 G RD L + V I + H I D +G Sbjct: 210 ------SGGSRDSNLSIHASKNVHINRIKSINATLHGIDITCGGLDYPYMGDGTTAPYPS 263 Query: 24065 -DGFVADYQVGGVFENNVSYNNDRH------------------GFNIVTSTNDFVLSNNV 24187 D +++D + + ++ ++ NN + G I + LSNN+ Sbjct: 264 RDIYISDCEAPSLGDDGITTNNSEYITISNCNCHDPRLLNNCNGIEIDDGSRHVQLSNNI 323 Query: 24188 AYGNGGAGLVVQRGSSDLPHPYDILIDG 24271 + G V + ++P Y++ I+G Sbjct: 324 SKNCFGG--VEVKAHGNVPAAYNVSING 349 Score = 47.0 bits (110), Expect = 3e-04 Identities = 59/268 (22%), Positives = 94/268 (35%), Gaps = 30/268 (11%) Frame = +3 Query: 31308 NVKDFGALGDXXXXXXXXXXXXXXXXXXXXXXTVYLPAGEYRVSGGEEPSDGALTIKSNV 31487 +VK +GA+GD VY+P G++ VS ++ I SN Sbjct: 105 SVKTYGAVGDGKTDDIEAFEKAIASGYP-----VYIPNGKFAVSR-------SIKIPSNT 152 Query: 31488 YIVGAGMGETVIKMVDGWTQNVTGMVRSAYGEETSNFGMSDLTLDGNRDNLSAKVDGWFN 31667 I GAG+ V+ +D + M+ Y N +SD TLDGN G Sbjct: 153 VITGAGIDNAVVTFLDSVPLGDSLMINDNYATGNENIYLSDFTLDGNCQRFGVNAIG--- 209 Query: 31668 GYIPGQDGADRDVTL-----ERVEIREMSGYGFDPHEQTINLTIRDSVAHDNGL------ 31814 G RD L + V I + H I D +G Sbjct: 210 ------SGGSRDSNLSIHASKNVHINRIKSINATLHGIDITCGGLDYPYMGDGTTAPYPS 263 Query: 31815 -DGFVADYQIGGVFENNVSYNNDRH------------------GFNIVTSTNDFVLSNNV 31937 D +++D + + ++ ++ NN + G I + LSNN+ Sbjct: 264 RDIYISDCEAPSLGDDGITTNNSEYITISNCNCHDPRLLNNCNGIEIDDGSRHVQLSNNI 323 Query: 31938 AYGNGGAGLVVQRGSYDLPHPYDILIDG 32021 + G V G ++P Y++ I+G Sbjct: 324 SKNCFGGVEVKAHG--NVPAAYNVSING 349 Score = 46.2 bits (108), Expect = 5e-04 Identities = 29/107 (27%), Positives = 46/107 (42%) Frame = +3 Query: 33834 NAKDFGALGDGASDDRPXXXXXXXXXXXXXXXTVYLPAGEYRVSPTGDPGDGCLMLKDGV 34013 + K +GA+GDG +DD VY+P G++ VS + + + Sbjct: 105 SVKTYGAVGDGKTDD-----IEAFEKAIASGYPVYIPNGKFAVSRS-------IKIPSNT 152 Query: 34014 YLVGAGMGETVIKLIDGSDQKITGMVRSAYGEETSNFGMSDLTLDGN 34154 + GAG+ V+ +D + M+ Y N +SD TLDGN Sbjct: 153 VITGAGIDNAVVTFLDSVPLGDSLMINDNYATGNENIYLSDFTLDGN 199 Score = 44.7 bits (104), Expect = 0.002 Identities = 64/280 (22%), Positives = 103/280 (36%), Gaps = 5/280 (1%) Frame = +2 Query: 26090 NAKDFGALGDGASDDRPXXXXXXXXXXXXXXXTVYLPAGEYRVSPTGEPGDGCLMLKDGV 26269 + K +GA+GDG +DD VY+P G++ VS + + + Sbjct: 105 SVKTYGAVGDGKTDD-----IEAFEKAIASGYPVYIPNGKFAVSRS-------IKIPSNT 152 Query: 26270 YLAGDGIGETVIKLIDGSDQKITGMVRSAYGEETSNFGMRDLTLDGNRDNTSGKVDGWFN 26449 + G GI V+ +D + M+ Y N + D TLDGN G Sbjct: 153 VITGAGIDNAVVTFLDSVPLGDSLMINDNYATGNENIYLSDFTLDGNCQRFGVNAIGSGG 212 Query: 26450 GYIPGQD-GADRNVTIERVEIREMSGYGFDPHEQTINLTIR--DSVAHDNGLDGFVADYL 26620 A +NV I R++ + +G D ++ + A D +++D Sbjct: 213 SRDSNLSIHASKNVHINRIKSINATLHGIDITCGGLDYPYMGDGTTAPYPSRDIYISDCE 272 Query: 26621 VDSVFENNVAYNNDRHGFNVVTSTYDFVMTNNVAYGNGGAGLTIQRGSEDLAQPTDILID 26800 S+ ++ + NN + + +D + NN G+ I GS + +I Sbjct: 273 APSLGDDGITTNNSEYITISNCNCHDPRLLNNC------NGIEIDDGSRHVQLSNNI--- 323 Query: 26801 GGAYYDNALEGVLFKMTNNV-TLQNAEIYGNGSSG-VRLY 26914 N GV K NV N I G+ S G VR Y Sbjct: 324 ----SKNCFGGVEVKAHGNVPAAYNVSINGHMSIGDVRSY 359 Score = 44.3 bits (103), Expect = 0.002 Identities = 31/107 (28%), Positives = 46/107 (42%) Frame = +1 Query: 28033 NVKDFGALGDGVSXXXXXXXXXXXXXXXXXXXXVYLPAGEYRVSGGEEPSDGCLTIKSNV 28212 +VK +GA+GDG + VY+P G++ VS + I SN Sbjct: 105 SVKTYGAVGDGKTDDIEAFEKAIASGYP-----VYIPNGKFAVSRS-------IKIPSNT 152 Query: 28213 HIVGAGMGETVIKLVDGWDQDVTGIVRSAYGEETSNFGMSDLTLDGN 28353 I GAG+ V+ +D + ++ Y N +SD TLDGN Sbjct: 153 VITGAGIDNAVVTFLDSVPLGDSLMINDNYATGNENIYLSDFTLDGN 199 Score = 41.2 bits (95), Expect = 0.018 Identities = 62/286 (21%), Positives = 108/286 (37%), Gaps = 11/286 (3%) Frame = +3 Query: 21621 NVKDFGALGDGVSXXXXXXXXXXXXXXXXXXXTVYLPAGEYRVSAAGEPGDGCLMLKDGV 21800 +VK +GA+GDG + VY+P G++ VS + + + Sbjct: 105 SVKTYGAVGDGKTDDIEAFEKAIASGYP-----VYIPNGKFAVSRS-------IKIPSNT 152 Query: 21801 YLAGAGMGETVIKLIDGSDQKITGMVRSAYGEETSNFGMRDLTLDGNRDNTSGKVDGWFN 21980 + GAG+ V+ +D + M+ Y N + D TLDGN N Sbjct: 153 VITGAGIDNAVVTFLDSVPLGDSLMINDNYATGNENIYLSDFTLDGNCQRFG------VN 206 Query: 21981 GYIPGGD-------GADRDVTIERVEVREMSGYGFDPHEQTINLTIR--DSVAHDNGLDG 22133 GG A ++V I R++ + +G D ++ + A D Sbjct: 207 AIGSGGSRDSNLSIHASKNVHINRIKSINATLHGIDITCGGLDYPYMGDGTTAPYPSRDI 266 Query: 22134 FVADYLVDSVFENNVAYANDRHGFNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLEDLALP 22313 +++D S+ ++ + N + + HD + NN +G+ + G + L Sbjct: 267 YISDCEAPSLGDDGITTNNSEYITISNCNCHDPRLLNN------CNGIEIDDGSRHVQLS 320 Query: 22314 SNILIDGGAYYDNAREGVLLKMTSDI-TLQNADIHGNGSSG-VRVY 22445 +NI N GV +K ++ N I+G+ S G VR Y Sbjct: 321 NNI-------SKNCFGGVEVKAHGNVPAAYNVSINGHMSIGDVRSY 359 Score = 40.8 bits (94), Expect = 0.023 Identities = 81/408 (19%), Positives = 159/408 (38%), Gaps = 20/408 (4%) Frame = +1 Query: 11470 AGGGTVYLPSGEYRVSGGDEASDGALIIKSNVYIVGAGMGETVIKLVDGWDEKLTGIIRS 11649 A G VY+P+G++ VS ++ I SN I GAG+ V+ +D + +I Sbjct: 128 ASGYPVYIPNGKFAVS-------RSIKIPSNTVITGAGIDNAVVTFLDSVPLGDSLMIND 180 Query: 11650 ANGEKTHDYGISDLTIDGNQDNTEGEVDGFYTGYIPGKNGADYNVTVERVEIREVSRYAF 11829 + +SD T+DGN F I D N+++ + ++R Sbjct: 181 NYATGNENIYLSDFTLDGN-------CQRFGVNAIGSGGSRDSNLSIHASKNVHINRI-- 231 Query: 11830 DPHEQTINLTIR----------------DSVAHDNGKDGFVADFQIGAVFENNVSYNNGR 11961 ++IN T+ + A +D +++D + ++ ++ ++ NN Sbjct: 232 ----KSINATLHGIDITCGGLDYPYMGDGTTAPYPSRDIYISDCEAPSLGDDGITTNNSE 287 Query: 11962 HGFNIVTSSHDIVFTNNVAYGNGANGLVVQRGSEDRDFVYNVEIEGGSFHDNGQEGVLIK 12141 + + HD NN NG+ + GS N+ N GV +K Sbjct: 288 YITISNCNCHDPRLLNN------CNGIEIDDGSRHVQLSNNIS-------KNCFGGVEVK 334 Query: 12142 MSTDVTLQGAEIYGNGYAGVRVQGVEDVRILDNYIHDNAQSKANAEVIVESYDDRDGPSD 12321 +V + NG+ + + R + ++ + +S + +I + + P++ Sbjct: 335 AHGNVP-AAYNVSINGHMSIGDVRSYNFRHIGHHSATDPESMSAKNIICNNLMSVN-PNN 392 Query: 12322 DYYETQNVTVKGNTIVGSANSTYGIQER---ADGTDYTSIGNNSVSGTQRG-IVQLSGTN 12489 N + V + ++ YG+ A T+ ++ ++S R V LSG Sbjct: 393 KRGFQNNAAPR----VLAVSAYYGVVVNGLSAYTTEPANLTETAISVQFRARNVSLSGIV 448 Query: 12490 STFSGRSGDAYQFIDGSTGNDLLTGTPIADLIVGGSGNDTLSGDAGND 12633 T + +A I GS G D + I+++ + SG + ++ +G D Sbjct: 449 MTGFSMAENAIYVIGGSRGGDSVN---ISNVTLNNSGRNGVAIGSGID 493 >ref|NP_049757.1|gp5 baseplate hub subunit and tail lysozyme Length = 575 Score = 49.3 bits (116), Expect = 6e-05 Identities = 35/125 (28%), Positives = 64/125 (51%) Frame = -3 Query: 62255 KKDAEEVFLQAQKDLKINVLNDSTASVGHDETLTVQNARTRTVKDGDETVTLEKGNRSVT 62076 +K + ++ D V D +VG E + R + DG T+ + +G+ + T Sbjct: 432 RKTVDNLYDITNADGNFLVAGDKKTNVGGSEIYYNMDNRLHQI-DGSNTIFV-RGDETKT 489 Query: 62075 LQTGSDTLDVRDSRTVKVGSDQTHSTGGDYSHTVTGDYSLTVNGNLTIKVSGTLTLQSSG 61896 ++ G+ T+ V+ + T+ V + + GD + V G+ + TVNGNL+ KV+GT+ G Sbjct: 490 VE-GNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGG 548 Query: 61895 DFTAR 61881 D+T + Sbjct: 549 DWTEK 553 Score = 43.1 bits (100), Expect = 0.005 Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 6/123 (4%) Frame = -3 Query: 62174 GHDETLTVQNARTRTVKDGDETVTLEKGNRSV-----TLQTGSDTLDVRDSRTVKVGSDQ 62010 G E ++ RTR D +T GN V T GS+ D+R ++ Sbjct: 419 GTYEEVSPSGRRTRKTVDNLYDITNADGNFLVAGDKKTNVGGSEIYYNMDNRLHQIDGSN 478 Query: 62009 THSTGGDYSHTVTGDYSLTVNGNLTIKVSGTLTLQSSGDFTARSDLSLTQQAGTSISQK- 61833 T GD + TV G+ ++ V GN+TI V G + GD T + + T ++S K Sbjct: 479 TIFVRGDETKTVEGNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKV 538 Query: 61832 AGT 61824 AGT Sbjct: 539 AGT 541 Score = 36.6 bits (83), Expect = 0.44 Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 4/141 (2%) Frame = -3 Query: 62156 TVQNARTRTVKDGDETVTLEK----GNRSVTLQTGSDTLDVRDSRTVKVGSDQTHSTGGD 61989 TV N T DG+ V +K G + + + S T+ V D+T + G+ Sbjct: 434 TVDNLYDITNADGNFLVAGDKKTNVGGSEIYYNMDNRLHQIDGSNTIFVRGDETKTVEGN 493 Query: 61988 YSHTVTGDYSLTVNGNLTIKVSGTLTLQSSGDFTARSDLSLTQQAGTSISQKAGTSFANQ 61809 + V G+ ++ V GN I V G T G+ T + +L+ + ++ G + + Sbjct: 494 GTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEK 553 Query: 61808 AGTSLDNKAGTTLVNDAGISL 61746 + +G ++ + I + Sbjct: 554 MASMSSISSGQYTIDGSRIDI 574 >ref|NP_996646.1|hypothetical protein predicted by GeneMark Length = 357 Score = 46.2 bits (108), Expect = 5e-04 Identities = 43/156 (27%), Positives = 61/156 (39%), Gaps = 4/156 (2%) Frame = -3 Query: 62186 TASVGHDETLTVQNARTRTVKDGDETVTLEKGNRSVTLQTGSDTLDVRDSRTVKVGSDQT 62007 TA+ G T T N T T E+ T G R S T +S T G T Sbjct: 161 TATAGESGTATAGNYGTATA---GESGTATAGYRGTATAGESGTATAGESGTATAGESGT 217 Query: 62006 HSTGGDYSHTVTGDYSLTV---NGNLTIKVSGTLTLQSSGDFTARSDLSLTQ-QAGTSIS 61839 +T G+Y G+ G T SGT T + G TA + + T GT+ + Sbjct: 218 -ATAGNYGTATAGESGTATAGYRGTATAGESGTATAGNYGTATAGNYGTATAGNYGTATA 276 Query: 61838 QKAGTSFANQAGTSLDNKAGTTLVNDAGISLTNKAG 61731 ++GT+ A GT+ GT + G + + G Sbjct: 277 GESGTATAGYRGTATAGNYGTATAGNYGTATAGEKG 312 Score = 41.6 bits (96), Expect = 0.014 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 1/124 (0%) Frame = -3 Query: 62099 EKGNRSVTLQTGSDTLDVRDSRTVKVGSDQTHSTGGDYSHTVTGDYSLTVNGNLTIKVSG 61920 E G+ V T +S T G T +T G+Y G+ +G T G Sbjct: 139 EVGDGGVAEVGALGTATAGESGTATAGESGT-ATAGNYGTATAGE-----SGTATAGYRG 192 Query: 61919 TLTLQSSGDFTA-RSDLSLTQQAGTSISQKAGTSFANQAGTSLDNKAGTTLVNDAGISLT 61743 T T SG TA S + ++GT+ + GT+ A ++GT+ GT ++G + Sbjct: 193 TATAGESGTATAGESGTATAGESGTATAGNYGTATAGESGTATAGYRGTATAGESGTATA 252 Query: 61742 NKAG 61731 G Sbjct: 253 GNYG 256 Score = 36.6 bits (83), Expect = 0.44 Identities = 41/168 (24%), Positives = 63/168 (37%), Gaps = 13/168 (7%) Frame = -3 Query: 62195 NDSTASVGHDETLTVQNARTRTVKDGDETVTLEKGNRSVTLQTGSDTLDVRDSRTVKVGS 62016 +D+ A + E + A V++ + E G S T +S T G+ Sbjct: 115 SDAAAYILAHEPKALNVAVIGLVREVGDGGVAEVGALGTATAGESGTATAGESGTATAGN 174 Query: 62015 DQTHSTGGDYSHTVTGDYSLTV----NGNLTIKVSGTLTLQSSGDFTA---------RSD 61875 T + G S T T Y T +G T SGT T SG TA S Sbjct: 175 YGTATAGE--SGTATAGYRGTATAGESGTATAGESGTATAGESGTATAGNYGTATAGESG 232 Query: 61874 LSLTQQAGTSISQKAGTSFANQAGTSLDNKAGTTLVNDAGISLTNKAG 61731 + GT+ + ++GT+ A GT+ GT + G + ++G Sbjct: 233 TATAGYRGTATAGESGTATAGNYGTATAGNYGTATAGNYGTATAGESG 280 >ref|NP_861854.1|gp5 baseplate hub subunit and tail lysozyme Length = 577 Score = 44.3 bits (103), Expect = 0.002 Identities = 33/123 (26%), Positives = 60/123 (48%) Frame = -3 Query: 62255 KKDAEEVFLQAQKDLKINVLNDSTASVGHDETLTVQNARTRTVKDGDETVTLEKGNRSVT 62076 +K E++F D V D +VG +E R + DG +T+ + +GN+ T Sbjct: 434 RKTVEDLFDITNGDGNFLVSGDKLVNVGANEIYYNMADRLHQI-DGSDTIFI-RGNQVKT 491 Query: 62075 LQTGSDTLDVRDSRTVKVGSDQTHSTGGDYSHTVTGDYSLTVNGNLTIKVSGTLTLQSSG 61896 ++ G TL V+ + + V + GD V G++ TVNGN+ V+G + + +G Sbjct: 492 VE-GDGTLYVKGNIKIVVDGNADILVKGDAKSQVEGNHDYTVNGNVKWTVNGNVDMTVAG 550 Query: 61895 DFT 61887 +++ Sbjct: 551 NWS 553 >ref|NP_891705.1|baseplate hub subunit and tail lysozyme Length = 600 Score = 43.5 bits (101), Expect = 0.004 Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 10/187 (5%) Frame = -3 Query: 62372 VYNGDNALPYALPANQTQSGIKTNSSKGGGGFNELRFED---KKDAEEVFLQAQKDLKIN 62202 VY ++ + + + T S + + G F E R + +K + +L ++ K+N Sbjct: 408 VYESESG--HIIEIDDTPSHERYHRKHPSGTFEETRPDGTRVEKIEGDDYLIVKQGRKVN 465 Query: 62201 VLNDSTASVGHDETLTVQNARTRTVKDGDETVTLEKGNRSVTLQ-------TGSDTLDVR 62043 V + V D + +TV DG+ T + +GN + T++ G T + Sbjct: 466 VKGNLQVVVEGDAQVYYMGNVMQTV-DGNVTEFI-RGNVNQTVEGTANMHVVGDVTAQLD 523 Query: 62042 DSRTVKVGSDQTHSTGGDYSHTVTGDYSLTVNGNLTIKVSGTLTLQSSGDFTARSDLSLT 61863 + T V + G+ + T+ G+Y LTV GN + V+GT + Q +GD++ S+ Sbjct: 524 ANLTANVKGNAELMIEGNTTETIKGNYDLTVEGNFNMTVNGTKSDQVNGDWSRNCGASVK 583 Query: 61862 QQAGTSI 61842 A ++ Sbjct: 584 DIASGTV 590 >ref|NP_046572.1|ABC transporter Length = 705 Score = 42.0 bits (97), Expect = 0.010 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 6/182 (3%) Frame = +1 Query: 87601 DVDLTLPGHGVTALFGHSGSGKTTLLRCVAGXXXXXXXXXXINGELWQDSAAGVFLPTHR 87780 D++L L + G SG+GK+T + ++ +NG D L + Sbjct: 501 DINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNG---LDINRYDHLSIRK 557 Query: 87781 RALGYVFQEASLFPHLSVRRNLEYG----MKRVDAASRQVSWERVLELLG--IGHLLERL 87942 R + Y+ + LF +++ NL G ++ A + L + L Sbjct: 558 RIV-YIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSEN 615 Query: 87943 PGRLSGGERQRVGIARALLTSPRLLLMDEPLAALDLKRKNEILPYLERLHDELDIPMLFV 88122 LS G++QR+ +ARA+L P++L++DE L+ +D N L Y E LH +D ++ + Sbjct: 616 GSNLSTGQKQRLALARAILHQPQVLILDESLSNID--PDNTKLIY-ETLH-RMDCLIILI 671 Query: 88123 SH 88128 +H Sbjct: 672 TH 673 >ref|NP_075290.1|gp23 Length = 685 Score = 40.4 bits (93), Expect = 0.030 Identities = 67/290 (23%), Positives = 113/290 (38%), Gaps = 31/290 (10%) Frame = +1 Query: 17557 LYGYAGNDLLD--GGAGRD----KLSGGEGADTFRFSLREDSHHSAAGTFSDQILDFDPN 17718 L G + ND+ GGA + +L GG TF SL G+ + + F+ + Sbjct: 313 LEGISANDVEVSLGGATNEVQTVRLKGGALGGTFTLSL---------GSETTVGIPFNAS 363 Query: 17719 QDKIDVSALGFTGLGNGYAGTLAVTTSVDGLRTYLKSYEADAEGRSFELALDGNHAATLS 17898 + + +G +G+ A +T ++ ++ + SF L LDG A ++ Sbjct: 364 DADLQGALVGLDSIGS--ADVRVKSTKINEVQVV--ELVGEPTSGSFTLTLDGQTTAPIA 419 Query: 17899 --ASNIVFGAAVPVDPNVEGTPVVGSDLDDELHG----TLGSEQ--------------IL 18018 A+ A + PN++G V L++ H T G Q + Sbjct: 420 YNATPATVAARIADLPNIDGNYVKVEGLNEWFHSPYRITFGEAQSQGVITDIISGIIDFI 479 Query: 18019 GG--GGADQLYGYAGNDLLDGGAGRDKLSGGEGADTFRFSLREDSHRSPTGTFSDQILDF 18192 GG GG G G D+ + LSGG G D + + +D R ++ F Sbjct: 480 GGLFGGNASGKGVGGIDIDEMTGDVGTLSGGAGLDV-QVTTEQDGDRL-------YVVSF 531 Query: 18193 DPNQDKIDVSALGFTGLGNGYAG---TLAVSTNVEGARTYLKSYDADAQG 18333 +++ L G +G G ++ +TNV+G R Y+ + D QG Sbjct: 532 QRAAGGLNLPQL--VGNASGLEGDDLSIETATNVDGGRPYVVRFTDDLQG 579 >ref|NP_932493.1|baseplate hub subunit and tail lysozyme Length = 600 Score = 40.4 bits (93), Expect = 0.030 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 7/173 (4%) Frame = -3 Query: 62243 EEVFLQAQKDLKINVLNDSTASVGHDETLTVQNARTRTVKDGDETVTLEKGNRSVTLQTG 62064 EE+ K KI + D V +++ + V + + DG+ V ++ G+ T+ Sbjct: 431 EEIHPDGTKVQKI--IGDDFYIVKNNQNVHV-GGNLKFIVDGNAVVFVQ-GDAETTISGN 486 Query: 62063 SDTLDVRDSRTVKVGSDQTHSTG-------GDYSHTVTGDYSLTVNGNLTIKVSGTLTLQ 61905 ++ DS G+ H TG G+ + G+ + TVN N IKV G Sbjct: 487 ANQFIRGDSIERVEGNVNQHVTGSVNQYVKGNVDSQIDGNMAATVNQNANIKVVGDCFNT 546 Query: 61904 SSGDFTARSDLSLTQQAGTSISQKAGTSFANQAGTSLDNKAGTTLVNDAGISL 61746 G++ + + + + G + + + G ++ A T D GT +N + I+L Sbjct: 547 IDGNYVLKVGGNFSTEVGGTRNDQVGGNWDRSASTVNDIAQGTFSINGSRINL 599 >ref|NP_945089.1|gp58 Length = 297 Score = 38.9 bits (89), Expect = 0.088 Identities = 24/58 (41%), Positives = 34/58 (58%) Frame = +2 Query: 37172 RGGSLAAAAERLHVTQTAVSARLHSLESQLGCRLLVRNRAGTRLTADGERFVGYANRL 37345 R G+ AAE L+V Q AVS ++ LE+ LG L VR+ LT G++ YA+R+ Sbjct: 20 RHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQ---YADRV 74 >ref|NP_944921.1|putative tail fiber protein GP37 Length = 388 Score = 38.9 bits (89), Expect = 0.088 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 3/133 (2%) Frame = -3 Query: 62195 NDSTASVGHD-ETLTVQNARTRTVKDGDETVTLEKGNRSVTL--QTGSDTLDVRDSRTVK 62025 N ST S + +T A T +V T GN + T+ + G D++ + V Sbjct: 245 NKSTNSFDYGTKTTNSTGAHTHSVSGSTNTT----GNHTHTVGGRYGGDSIGGKHRVQVS 300 Query: 62024 VGSDQTHSTGGDYSHTVTGDYSLTVNGNLTIKVSGTLTLQSSGDFTARSDLSLTQQAGTS 61845 G++Q S GD+SHT++G + T N T+ + + G T + ++L Q + + Sbjct: 301 -GTEQVSSVAGDHSHTISGSTNTTGNHQHTVAIGAHTHTVAIGAHTHKGTVTL-QSSEHT 358 Query: 61844 ISQKAGTSFANQA 61806 S GT+ + QA Sbjct: 359 HSGTTGTTGSGQA 371 >ref|NP_046674.1|similar to Bacillus subtilis YclG Length = 586 Score = 37.4 bits (85), Expect = 0.26 Identities = 65/292 (22%), Positives = 114/292 (39%), Gaps = 12/292 (4%) Frame = +1 Query: 11671 DYGISDLTIDGNQDN-----TEGEVDGFYTGYIPGKNGADYNVTVERVEIREVSRYAFDP 11835 +YGI + + + T+ + GF G + G V+++ ++ S A Sbjct: 306 EYGIDSVGVSSTETGNRIQITDNNIQGFKIGMMIRGKG----VSIDNNTVKNASNCAIAT 361 Query: 11836 HEQTINLTIRDSVAHDNGKDGFVADFQIGAVFENNVSYNNGRHGFNI----VTSSHDIVF 12003 H + S++++ +D Q+ + VS N G+ + V S+D+ F Sbjct: 362 H-----MAEDVSISNNRIQDSDCIQIQVRNSSDIKVSNNKGKGTTSAYAIKVMDSNDVKF 416 Query: 12004 TNNVAYGNGANGLVVQRGSEDRDFVYNVEIEGGSFHDNGQEGVLIKMSTDVTLQGAEIYG 12183 NN + N GL +R R + + + G + G+ ++V L EI+ Sbjct: 417 LNNT-FSNLYGGLYCERSQAVRIKLNDFLLSGKGY------GIYWDKDSEVFLTRNEIFE 469 Query: 12184 NGYAGVRVQGVED---VRILDNYIHDNAQSKANAEVIVESYDDRDGPSDDYYETQNVTVK 12354 V + G D +RI DN I+ N + I+ + G S+ V+ Sbjct: 470 P--RNVAIMGAADMYNIRISDNQIY-------NCKAIIAIH--LIGGSEHM-------VR 511 Query: 12355 GNTIVGSANSTYGIQERADGTDYTSIGNNSVSGTQRGIVQLSGTNSTFSGRS 12510 GN I+ + +S G +GT + N V G G LS +TF+ S Sbjct: 512 GNEIMFNRDSDQGYGIYLNGTKKVRLIRNDVQGI--GARVLSHPFATFNASS 561 >ref|YP_006601.1|Gp21 Length = 3433 Score = 37.4 bits (85), Expect = 0.26 Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 2/148 (1%) Frame = -3 Query: 62192 DSTASVGHDETLTVQNARTRTVKDGDETVTLEKGNRSVTLQTGSDTLDVRDSRTVKVGSD 62013 D+TA T TV + G+ T TLE G + T +D D+ TV+ + Sbjct: 2492 DATAKAVDSLTTTVNQQGSTLTSIGNRTTTLENGLST----TNADVNKKADASTVQTLQN 2547 Query: 62012 QTHSTGGDYSHTVTGDYSLTVNGNLTIKVSGTLTLQSSGDFTARSDL--SLTQQAGTSIS 61839 G D + T + LT + + T ++ D TA L ++TQQ GT + Sbjct: 2548 TVTQQGKDLTATNSAITKLTSDLSTT-----NASVNKKADATALQSLQNTVTQQGGTLST 2602 Query: 61838 QKAGTSFANQAGTSLDNKAGTTLVNDAG 61755 Q + + +LD GT + D+G Sbjct: 2603 QGNAITSLENSLNALD-VGGTNQIPDSG 2629 >ref|NP_943809.1|gp31 Length = 751 Score = 37.0 bits (84), Expect = 0.33 Identities = 66/305 (21%), Positives = 119/305 (39%), Gaps = 19/305 (6%) Frame = +1 Query: 15019 NPVVSEGPSIETTAVAGTEGNDLLYGTEVGEELVGGAGDDRLYGFGGNDVLDGGAGRDRL 15198 N +++ S+ TA+AG + + + ++ GAGD GFG D++ G R Sbjct: 423 NALMNIPASVVNTAIAGASNIENALQQAI-DSVIAGAGDLIGSGFGFADMIAQLTGLRRA 481 Query: 15199 TGGLDADIFRFSLREDSYRSAAGTFSDQILDFDPNQDKIDVSALGFTGLGNGYAGTLAVT 15378 T G A + + + AA + +++DF + ++ FT + + +G++ +T Sbjct: 482 TAGTAAAVVNLQSQVANLDPAA---NSEVVDFGEFANSASPPSM-FTKVSDTGSGSIILT 537 Query: 15379 TSADGSHTYLKSYEVDAQGRSFEISLQGNHAAALSAANIVFGAAVPVDPNVEGTPVVGSD 15558 L DA GR F + G L IV P+V + G D Sbjct: 538 NGV------LAWNSADAAGREFYLYNGGPLQTDLFEVQIVL-------PSVPSHGIFGLD 584 Query: 15559 LDDELH-----GTLGSEQILGGGGAD--RLYGYAGNDLLDGG---AGRDKLTGGEGADTF 15708 + ++ G+ ++ G D R+Y + G + D LT G +F Sbjct: 585 STNYVYLIGRSDATGNNMVVARLGWDEVRVYSRNSGTMTQIGPTISADDILTSGSSV-SF 643 Query: 15709 RFSLREDSHRSAAGTFSDQILDFDPNQDKIDVSALG----FTGL----GNGYA-GTLAVT 15861 + D + D++ ++ D+ ++ +G F GL GN YA G ++ Sbjct: 644 KGGTIADPRYFSLSINGDKVYEY---SDEAPITVIGASNRFCGLGLEKGNNYATGRISTW 700 Query: 15862 TSADG 15876 DG Sbjct: 701 AMLDG 705 >ref|NP_620626.1|putative transposase Length = 362 Score = 36.6 bits (83), Expect = 0.44 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = -1 Query: 95008 RHPQTNGKDERFHRSLKAEVLNGRSFHTLHQAQEAFDNWRVVYNHQRPHEALRMVTP 94838 R PQ+NGK ERFH++ + Q +++ YN +R H++L TP Sbjct: 295 RSPQSNGKIERFHQNYTKLFVFEEKILNAVSLQNKLNDYYYFYNFERVHKSLNFQTP 351 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 36.6 bits (83), Expect = 0.44 Identities = 28/71 (39%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +3 Query: 38220 RVCRSRGVRTRTSPLRAIPRPRPHPTALRRVRRADAPLIAPS--------DPQH------ 38357 R+ R+R TRT PR R HP A RRVR P + P+ +P H Sbjct: 7 RLRRARPPHTRTPA----PRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRAP 62 Query: 38358 SRPAAGGPRTP 38390 SRPAAG R P Sbjct: 63 SRPAAGPRRHP 73 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 366,072,911 Number of Sequences: 14420 Number of extensions: 7263975 Number of successful extensions: 30827 Number of sequences better than 0.5: 18 Number of HSP's better than 0.5 without gapping: 8433 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 30573 length of database: 3,019,461 effective HSP length: 121 effective length of database: 1,274,641 effective search space used: 40237867088 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig45 (86,808 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_006499.1|Cin 93 4e-18 ref|NP_050655.1|Gin 80 3e-14 ref|NP_944186.1|hypothetical protein 76 6e-13 ref|NP_817947.1|gp96 69 1e-10 ref|NP_112664.1|INT 61 2e-08 ref|NP_463492.1|putative integrase 60 4e-08 ref|NP_690785.1|site-specific recombinase for integration and ex... 55 1e-06 ref|NP_958267.1|hypothetical protein 46 5e-04 ref|NP_852555.1|Site-specific recombinase 44 0.002 ref|NP_891600.1|Gp44 44 0.003 ref|NP_047971.2|gp26 43 0.006 ref|NP_803852.1|ORF286 41 0.021 ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase access... 40 0.028 ref|NP_612879.1|Gp50 protein 40 0.036 ref|YP_164321.1|hypothetical protein 39 0.11 ref|NP_818040.1|gp67 39 0.11 ref|NP_817402.1|gp64 39 0.11 ref|NP_049665.1|gp44 clamp loader subunit, DNA polymerase access... 39 0.11 ref|NP_690824.1|NTPase P4 39 0.11 ref|NP_813759.1|unknown 38 0.14 ref|NP_852586.1|endonuclease 38 0.14 ref|NP_932394.1|DNA polymerase accessory protein 38 0.14 ref|NP_511037.1|Gp54 protein 37 0.24 ref|YP_164705.1|orf70 37 0.31 >ref|YP_006499.1|Cin Length = 186 Score = 93.2 bits (230), Expect = 4e-18 Identities = 53/139 (38%), Positives = 81/139 (58%) Frame = +2 Query: 67454 LAYARVSTDGQTINAQRHAIEQRHSIADGHWFFDEATSGATKALQRPGFAKLFSFARSGD 67633 + Y RVST+ Q QR+A+E A F++ SG K +RPG K+ GD Sbjct: 3 IGYVRVSTNEQNTALQRNALES----AGCELIFEDKASG--KKAERPGLKKVLRMLSRGD 56 Query: 67634 TLIVAAIDRLGRNTIDVLETVEALQAKGVAIISLREGFDLASPIGKAMLTMLAAVAELER 67813 TL+V +DRLGR+ ++ VE L+ +G+ SL + D ++P+G+ ++ A+AE+ER Sbjct: 57 TLVVWKLDRLGRSMRHLVVLVEELRDRGINFRSLTDSIDTSTPMGRFFFHVMGALAEMER 116 Query: 67814 SNIKARQRAGIDRAKAEGK 67870 I R RAG+D A+AEG+ Sbjct: 117 ELIVERTRAGLDAARAEGR 135 >ref|NP_050655.1|Gin Length = 193 Score = 80.1 bits (196), Expect = 3e-14 Identities = 48/147 (32%), Positives = 79/147 (53%) Frame = +2 Query: 67454 LAYARVSTDGQTINAQRHAIEQRHSIADGHWFFDEATSGATKALQRPGFAKLFSFARSGD 67633 + Y RVST+ Q + QR+A+ A F++ SG RPG + + GD Sbjct: 3 IGYVRVSTNDQNTDLQRNALV----CAGCEQIFEDKLSGTRT--DRPGLKRALKRLQKGD 56 Query: 67634 TLIVAAIDRLGRNTIDVLETVEALQAKGVAIISLREGFDLASPIGKAMLTMLAAVAELER 67813 TL+V +DRLGR+ ++ V L+ +G+ SL + D +SP+G+ ++ A+AE+ER Sbjct: 57 TLVVWKLDRLGRSMKHLISLVGELRERGINFRSLTDSIDTSSPMGRFFFHVMGALAEMER 116 Query: 67814 SNIKARQRAGIDRAKAEGKKLGAPKQI 67894 I R AG+ A+ +G+ G P ++ Sbjct: 117 ELIIERTMAGLAAARNKGRIGGRPPKL 143 >ref|NP_944186.1|hypothetical protein Length = 347 Score = 75.9 bits (185), Expect = 6e-13 Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 6/168 (3%) Frame = +3 Query: 12192 YVVGGCVRDLLLDIEPKDFD-VATSATPEQVRAEFRNARVIGRRFKLAHVHFGREIIEVA 12368 Y+VGG VRD++++ EPKD D V +T +++ A + + +G F + H G+E Sbjct: 4 YLVGGAVRDMVMNREPKDRDYVVVGSTHDEMIA--KGYKQVGADFPVYLDHLGQEYALAR 61 Query: 12369 TFRAHHPXXXXXXXXNHLAMRHESGRILRD-----NVYGTLEEDAQRRDFTINALYFDIA 12533 T R+ +G+ D N TLE+D +RRDFT+NA+ + Sbjct: 62 TERS-------------------TGKGYNDFVTDFNPNVTLEQDLKRRDFTMNAMALGM- 101 Query: 12534 HDRILDYAHGVHDIRNHLVRLIGDPEQRYLEDPVRMLRAVRFAAKLDF 12677 + ++D +G DI+ +V ++ Q + EDPVR+LRA RFAA+ DF Sbjct: 102 NGVVIDPYNGQQDIKERVVNVVNP--QAFHEDPVRVLRACRFAARYDF 147 >ref|NP_817947.1|gp96 Length = 566 Score = 68.6 bits (166), Expect = 1e-10 Identities = 64/275 (23%), Positives = 110/275 (40%), Gaps = 40/275 (14%) Frame = -1 Query: 36768 LSEDQVKTTFA---------DVAGCDEAKEEVSE----LVEFLRDPGKFQRLGG------ 36646 LS +V+TTFA DV+ K+ + + + + PG F +GG Sbjct: 233 LSSQEVQTTFARSLIENGSIDVSAIAAEKKRLIDQEPAMEYYPPRPGGFDNVGGLDVFKE 292 Query: 36645 ------------------RIPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 36520 ++P+G +++G G GKTL +A+ E P + + Sbjct: 293 WAIRQKIAYSPEARAYNLKLPKGAMLIGVSGCGKTLSCQALGAEWNWPVVRLDINALKGK 352 Query: 36519 FVGVGASRVRDMFDQAKKHAPCIIFIDEIDAVXXXXXXXXXXXHDEREQTLNQLLVEMDG 36340 +VG SR+R +F + I++IDE++ + L +L M Sbjct: 353 YVGESESRLRGIFSKIDALGQVIVYIDEVEKALEGAVSGSADGGVSAD-ALGAILTWMQ- 410 Query: 36339 FEMNDGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDIRGREQILKVHMR---KVPVS 36169 + V+ N P L P LR GRFD + LP R + +R + + Sbjct: 411 -DRAGQAFVMMTANDPSKLPPEFLRKGRFDEVWWIDLPTRAERMSVAAATLRSNGRDAET 469 Query: 36168 EDVNPAVIARGTPGFSGADLANLVNEASLFAARAN 36064 ++ +A T GF+GA++A + ++F A A+ Sbjct: 470 LGIDLGAVADATNGFTGAEIAACIEHDAMFNAFAD 504 >ref|NP_112664.1|INT Length = 485 Score = 61.2 bits (147), Expect = 2e-08 Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 15/160 (9%) Frame = +2 Query: 67442 MTATLA-YARVST-----DGQTINAQ-----RHAIEQRHSIADGHWFFDEATSGATKALQ 67588 MT +A Y RVST +G +I+ Q ++A ++D + D SGA L+ Sbjct: 1 MTKKVAIYTRVSTTNQAEEGFSIDEQIDRLTKYAEAMGWQVSDT--YTDAGFSGAK--LE 56 Query: 67589 RPGFAKLFSFA--RSGDTLIVAAIDRLGRNTIDVLETVEALQAKG-VAIISLREGFDLAS 67759 RP +L + ++ DT++V +DRL R+ D L V+ + K + ISL E D +S Sbjct: 57 RPAMQRLINDIENKAFDTVLVYKLDRLSRSVRDTLYLVKDVFTKNKIDFISLNESIDTSS 116 Query: 67760 PIGKAMLTMLAAVAELERSNIKARQRAG-IDRAKAEGKKL 67876 +G LT+L+A+ E ER NIK R G + RAK+ GK + Sbjct: 117 AMGSLFLTILSAINEFERENIKERMTMGKLGRAKS-GKSM 155 >ref|NP_463492.1|putative integrase Length = 452 Score = 59.7 bits (143), Expect = 4e-08 Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 16/156 (10%) Frame = +2 Query: 67460 YARVSTDGQTINAQRHAIEQRHSIA--DGHW-----FFDEATSGATKALQRPGFAKLFSF 67618 Y RVST Q N A ++ + W F D SG+ + RP ++ S Sbjct: 6 YIRVSTQEQVENYSIQAQTEKLTALCRSKDWDVYDIFIDGGYSGSN--MNRPALNEMLSK 63 Query: 67619 ARSGDTLIVAAIDRLGRNTIDVLETVEALQAKG-VAIISLREGFDLASPIGKAMLTMLAA 67795 D ++V +DRL R+ D + +E K V +SL E D +SP G+AM+ +L+ Sbjct: 64 LHEIDAVVVYRLDRLSRSQRDTITLIEEYFLKNNVEFVSLSETLDTSSPFGRAMIGILSV 123 Query: 67796 VAELERSNIKARQ--------RAGIDRAKAEGKKLG 67879 A+LER I+ R AG+ A+G+ G Sbjct: 124 FAQLERETIRDRMVMGKIKRIEAGLPLTTAKGRTFG 159 >ref|NP_690785.1|site-specific recombinase for integration and excision Length = 474 Score = 54.7 bits (130), Expect = 1e-06 Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 12/145 (8%) Frame = +2 Query: 67460 YARVSTD-----GQTINAQRHAIEQRHSIADG----HWFFDEATSGATKALQRPGFAKLF 67612 Y RVST+ G +I+AQ+ ++ + I+ G ++ DE S K + RP + Sbjct: 15 YVRVSTEEQAKEGYSISAQKEKLKA-YCISQGWDSYKFYIDEGKSA--KDIHRPSLELML 71 Query: 67613 SFARSG--DTLIVAAIDRLGRNTIDVLETVEALQAKGVAIISLREGFDLASPIGKAMLTM 67786 G DT++V +DRL R+ D+ ++ S E +D S G+ +T+ Sbjct: 72 RHIEQGIIDTVLVYRLDRLTRSVRDLYSLLDYFDKYQAVFRSATEVYDTGSATGRLFITL 131 Query: 67787 LAAVAELERSNIKARQRAG-IDRAK 67858 +AA+A+ ER N+ R + G +++A+ Sbjct: 132 VAAMAQWERENLGERVKMGQVEKAR 156 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 46.2 bits (108), Expect = 5e-04 Identities = 52/166 (31%), Positives = 63/166 (37%), Gaps = 11/166 (6%) Frame = +2 Query: 20516 PPIQTPAGQPRTGRRTGRSPFPGAPRPFSAERRPDPFPGPAAERAGRSPL*RPPARSTQS 20695 P +TPA + R R R RP P GPA +R+ P P R S Sbjct: 14 PHTRTPAPRTRAHPRAHRR----------VRTRPHPHLGPARDRSPDHPEPDHPCRRAPS 63 Query: 20696 RHLA--ERH---RRTDPAGQRAECRPDRLERSVQPGADALQRQAGHRPARPGHLVALRAE 20860 R A RH RT P + EC PD +V P A A PA P + ALR Sbjct: 64 RPAAGPRRHPPVARTRPRTRAPECAPDP-GPAVHPAAPGCAPAA---PAAPEYAPALRPR 119 Query: 20861 FRAPGAGERHAQ---PEQR---LPVGSGGRFSPAVAERRPQARTVR 20980 G H + P R +P+G G R V +RR R R Sbjct: 120 APECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRR 165 Score = 39.7 bits (91), Expect = 0.047 Identities = 79/269 (29%), Positives = 87/269 (32%), Gaps = 35/269 (13%) Frame = +2 Query: 20084 ARLRESASS*HTPDQAWSEKKRYSHAQRTETRPRY---PGRSPRPLWPVRLPRSPWRRPA 20254 AR A HT A + +R TRP P R P P P P RR A Sbjct: 5 ARRLRRARPPHTRTPAPRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPE--PDHPCRR-A 61 Query: 20255 GDQSATPPLRHPAGQPGAPGVQSLHLGTDPAPTA-PR*SG*RATGLRAPVRQVAMG*PVE 20431 + A P RHP P ++ DP P P G AP P Sbjct: 62 PSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYA-----PAL 116 Query: 20432 RPSA-------------SGRTATGAPPCGSVARQAGRTESGPPIQTPAGQPRTGRRTGRS 20572 RP A + RT T A P G AR ++TP R RR R Sbjct: 117 RPRAPECDRGAHHLRTRAPRTRTRAVPLGPGAR----------VRTPVEDRRRTRRR-RR 165 Query: 20573 PFP----------GAPRPFSAER-------RPDPFPGPAAERAGRSPL*RPPARSTQSRH 20701 P P G R A R R P PG AA R R P P R Sbjct: 166 PDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPG-AARRPRRRPHPEHPRAVRPRRR 224 Query: 20702 LAERHRRTDPAGQRAECRP-DRLERSVQP 20785 RHRR RA RP R RS P Sbjct: 225 TGRRHRR------RASLRPRHRRHRSTPP 247 Score = 38.5 bits (88), Expect = 0.11 Identities = 28/73 (38%), Positives = 30/73 (41%) Frame = +2 Query: 59840 PQGHFPGGRRGAQNRHHGDHRGRHLPHRAPGRGRQPADPAPGEAPLRRGDPVRPCPGRQP 60019 P P R A R H R R PH P R R P P P + P RR P RP G Sbjct: 14 PHTRTPAPRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEP-DHPCRRA-PSRPAAGP-- 69 Query: 60020 ALRLHPGLRRAGP 60058 R HP + R P Sbjct: 70 --RRHPPVARTRP 80 >ref|NP_852555.1|Site-specific recombinase Length = 490 Score = 44.3 bits (103), Expect = 0.002 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 11/108 (10%) Frame = +2 Query: 67460 YARVSTDGQT--------INAQRHAIEQRHSIADGHWFF-DEATSGATKALQRPGFAKLF 67612 Y RVSTD I+ R+ IE+ D + + DEA SG T L+R + Sbjct: 9 YVRVSTDRDEQVSSIENQIDICRYWIEKNGYEWDENSIYKDEAVSG-TAWLERHAMQLIL 67 Query: 67613 SFARSG--DTLIVAAIDRLGRNTIDVLETVEALQAKGVAIISLREGFD 67750 R DT++ +I RLGR+ D LE E L GV ++++ EG+D Sbjct: 68 EKVRRKELDTVVFKSIHRLGRDLRDALEIKEILLGHGVRLVTIEEGYD 115 >ref|NP_891600.1|Gp44 Length = 324 Score = 43.5 bits (101), Expect = 0.003 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = -1 Query: 36648 GRIPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRD--MFDQ 36475 GRIP +L PGTGKT +AKA+ + V + ++G+D F+ +R D+ Sbjct: 40 GRIPSMILHSPSPGTGKTTVAKALCEDVGVDYLFVNGADCKIDFIRDEITRFAQSVSLDE 99 Query: 36474 AKKHAPCIIFIDEID 36430 K+ ++ IDE D Sbjct: 100 EKREKGKVVIIDEYD 114 >ref|NP_047971.2|gp26 Length = 174 Score = 42.7 bits (99), Expect = 0.006 Identities = 19/50 (38%), Positives = 29/50 (58%) Frame = -2 Query: 53534 LEAMILEGSLKAGERLPAERALAEQFGVSRPSLREAIQKLAARGLLVSRQ 53385 + I G G++LP+ERA+ E G+ R +LR+ + KL A G+L Q Sbjct: 30 ISGWIATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGILEVHQ 79 >ref|NP_803852.1|ORF286 Length = 508 Score = 40.8 bits (94), Expect = 0.021 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Frame = -1 Query: 36372 TLNQLLVEMDGFEMNDGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDIRGRE--QIL 36199 TL+ LL +DG D + I TN P+ +D ALLR GR D +V +P +R +E + + Sbjct: 407 TLSALLNGLDGIVPLDETMTILTTNHPENIDKALLRKGRVD--YMVEIPYLRDQEVREYI 464 Query: 36198 KVHMRKVPVSEDV 36160 K+ + ED+ Sbjct: 465 KLMFPDFDIPEDI 477 >ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase accessory protein Length = 320 Score = 40.4 bits (93), Expect = 0.028 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 1/125 (0%) Frame = -1 Query: 36648 GRIPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV-GVGASRVRDMFDQA 36472 G++P +L PGTGKT +AKA+ + ++GSD FV G + R + + Sbjct: 40 GKLPHIILHSPSPGTGKTTVAKALCNDINAEMMFVNGSDCKIDFVRGPLTAFARSVSMEG 99 Query: 36471 KKHAPCIIFIDEIDAVXXXXXXXXXXXHDEREQTLNQLLVEMDGFEMNDGIIVIAATNRP 36292 K P +I IDE D ++ L M+ F N II I A N Sbjct: 100 K---PKVIVIDEFD-------------RSGLAESQRHLRTFMEEFSSNCSII-ITANNID 142 Query: 36291 DVLDP 36277 +++P Sbjct: 143 GIIEP 147 >ref|NP_612879.1|Gp50 protein Length = 142 Score = 40.0 bits (92), Expect = 0.036 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 2/103 (1%) Frame = -2 Query: 67223 KSQQMSYAAERKGMAN--LHADKKWAVFRARIIELDSGACLECGRTEADGVVLQVHHKHY 67050 K + Y RK + K+W + R +I D+G C C + V VHH Sbjct: 31 KERHKCYKVRRKDKEEQAFYNSKEWRIVRGFVINRDNGLCKLCLSKKKIRVADVVHHVIE 90 Query: 67049 IRGRKPWEYDPSDCETLCKGCHAREHGEIRPSTGLEYIGEDDL 66921 ++ R+ + + +LC CH H + + +D+L Sbjct: 91 LKERRELGLETGNLLSLCNSCHQEIHSKYNKGMVTKKNTQDEL 133 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 38.5 bits (88), Expect = 0.11 Identities = 89/364 (24%), Positives = 113/364 (31%), Gaps = 23/364 (6%) Frame = -2 Query: 47708 EPVERLAHGPLGGLLNQVSENEHGK-------------NHRYRSGHHQLLRVRAGKR-CG 47571 EP R A GP +++ EHG + R + + R G R G Sbjct: 290 EPALRRAAGPGPRAVDREHAPEHGAAPVRGRPLPRGKPDQRVQRADQPVQRAERGLRDAG 349 Query: 47570 QGHRERGGRTHHAVHHRLYQRRRNPGRPVGQAPGGDQPA-EHPVCGQTPDRSPLRRRCGA 47394 G + G + L RR PG G DQPA V GQ R+ RR G Sbjct: 350 AGLPHQAG-CGYLQADCLQDRRGGPG-----GAGADQPAARRGVQGQAGRRTVERR--GL 401 Query: 47393 EGHQAGSXXXXXXXXXXXXXXXXXXXXGSAADQRRSAEEDEKDRRGLSRRAGH-RSGDHR 47217 +G AG R ++ E RR RRAG R+ R Sbjct: 402 QGADAGGI-------------------------RARRDDQEPVRRLPRRRAGVCRADRRR 436 Query: 47216 AGLLQRQPAPSHQGCRSHRRPGRQADHQRADRGCAGLXXXXXXXXXXXXXXXXXXXXXXX 47037 G ++R P R GR RA CAG Sbjct: 437 EGQVRRLRGP---------RQGRVGQGGRAR--CAG-------------PRLRFDHSGVG 472 Query: 47036 XXXXXXXXXXXXXXRGAGHQRRYLPGWRGLR--HPSDRLSRRRVQEGKRHQPQGRPAGHA 46863 G HQ + G RG HP+ + R VQ H P Sbjct: 473 EQGRCQGQGRADQDGGGAHQGVEVLGGRGRLQGHPAGQPERGAVQ----HVGVPGPGRSL 528 Query: 46862 APEGSRREGQDRAVLQPADRRQPAVHHRRPDRSEAPEREDLPRQAGVV-----GGGPGRA 46698 A G R+ G+ R + QP H R + + RED R+ G GPG Sbjct: 529 ARSGQRQRGRRRNAISLCRHEQPDQHRLRRNADQRVHREDAERRTAGADRSGGGEGPGAV 588 Query: 46697 HHRA 46686 H A Sbjct: 589 HRSA 592 Score = 36.6 bits (83), Expect = 0.40 Identities = 38/118 (32%), Positives = 47/118 (39%), Gaps = 8/118 (6%) Frame = -1 Query: 31149 KGDPGQCHRRS--RQQCRGAAGEG------GYHPSRDLPGRCAGTGSAEGDSPGEPRSAV 30994 +G GQ RR+ R+ +GA G P R LP R AG A+ G+ R Sbjct: 385 RGVQGQAGRRTVERRGLQGADAGGIRARRDDQEPVRRLPRRRAGVCRADRRREGQVRRLR 444 Query: 30993 DPVAYRTGHAHRVVPHRGAGNRRRVDRGEGCFP*SGVARQDRRAFQGQTYRSAGSLHR 30820 P R G R R AG R R D SGV Q R QG+ + G H+ Sbjct: 445 GPRQGRVGQGGRA---RCAGPRLRFDH-------SGVGEQGRCQGQGRADQDGGGAHQ 492 >ref|NP_818040.1|gp67 Length = 117 Score = 38.5 bits (88), Expect = 0.11 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%) Frame = +2 Query: 68588 RAKRKTPNEIVE-ILAMKEAGWTEPAIAQKLDISISTIRRITKKHGIKTGAAQAAL---- 68752 R K P +VE I+A+ GWT IA+++ S T+ R+ +HGI G A + Sbjct: 2 RRGAKLPEWVVERIVALSWNGWTTGDIAKEVGCSDRTVSRVRVRHGISRGEAHDPIPEHV 61 Query: 68753 VQQAREQLLDNAFLLDRAQEIAAA 68824 + QA L D A D A + + Sbjct: 62 LAQAARLLDDGASYTDAAATVGCS 85 >ref|NP_817402.1|gp64 Length = 117 Score = 38.5 bits (88), Expect = 0.11 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%) Frame = +2 Query: 68588 RAKRKTPNEIVE-ILAMKEAGWTEPAIAQKLDISISTIRRITKKHGIKTGAAQAAL---- 68752 R K P +VE I+A+ GWT IA+++ S T+ R+ +HGI G A + Sbjct: 2 RRGAKLPEWVVERIVALSWNGWTTGDIAKEVGCSDRTVSRVRVRHGISRGEAHNPIPEHV 61 Query: 68753 VQQAREQLLDNAFLLDRAQEIAAA 68824 + QA L D A D A + + Sbjct: 62 LAQAARLLDDGASYTDAAATVGCS 85 >ref|NP_049665.1|gp44 clamp loader subunit, DNA polymerase accessory protein Length = 319 Score = 38.5 bits (88), Expect = 0.11 Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 2/159 (1%) Frame = -1 Query: 36648 GRIPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRD--MFDQ 36475 G+IP +L PGTGKT +AKA+ + ++GSD FV + FD Sbjct: 40 GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDG 99 Query: 36474 AKKHAPCIIFIDEIDAVXXXXXXXXXXXHDEREQTLNQLLVEMDGFEMNDGIIVIAATNR 36295 +K +I IDE D ++ L M+ + N II I A N Sbjct: 100 RQK----VIVIDEFD-------------RSGLAESQRHLRSFMEAYSSNCSII-ITANNI 141 Query: 36294 PDVLDPALLRPGRFDRQVVVGLPDIRGREQILKVHMRKV 36178 ++ P R R + G P + +++K +R++ Sbjct: 142 DGIIKPLQSR----CRVITFGQPTDEDKIEMMKQMIRRL 176 >ref|NP_690824.1|NTPase P4 Length = 331 Score = 38.5 bits (88), Expect = 0.11 Identities = 32/106 (30%), Positives = 50/106 (47%) Frame = +1 Query: 48598 AGMTVITGETGAGKSIMLDALGLALGDRTDSGAVRPGADRADILASFDLTEIPEARAWLA 48777 +GM ++TG+ +GK+ ++ ALG ALG + VR G + F++ ARA L Sbjct: 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ 182 Query: 48778 ERDLEREGPCILRRVITAEGRSRAYINGSPCPQGDLRALGELLIDV 48915 R + + L+ VI A G G+ G R +LL D+ Sbjct: 183 HRVIVIDS---LKNVIGAAG-------GNTTSGGISRGAFDLLSDI 218 >ref|NP_813759.1|unknown Length = 184 Score = 38.1 bits (87), Expect = 0.14 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +3 Query: 12162 ERLQNAGYQAYVVGGCVRDLLLDIEPKDFD-VATSATPEQV 12281 E L G A + GGC RDL +EPKD D + + PE V Sbjct: 14 EHLIGLGIGAIIAGGCARDLFFGVEPKDIDIICAGSDPETV 54 >ref|NP_852586.1|endonuclease Length = 130 Score = 38.1 bits (87), Expect = 0.14 Identities = 20/67 (29%), Positives = 31/67 (46%) Frame = -2 Query: 67157 WAVFRARIIELDSGACLECGRTEADGVVLQVHHKHYIRGRKPWEYDPSDCETLCKGCHAR 66978 W R+++ E ++G C CGR G VHH I+ + + ++ LC CH Sbjct: 50 WKFVRSKVYERENGCCQRCGRF-VFGRRAHVHHVIPIKEDPILKLEENNLRLLCPVCHTI 108 Query: 66977 EHGEIRP 66957 E E +P Sbjct: 109 EENEDKP 115 >ref|NP_932394.1|DNA polymerase accessory protein Length = 319 Score = 38.1 bits (87), Expect = 0.14 Identities = 17/39 (43%), Positives = 24/39 (61%) Frame = -1 Query: 36648 GRIPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 36532 GRIP +L PGTGKT +A+A+ E F ++G+D Sbjct: 40 GRIPNIILHSPSPGTGKTTVARALVAEIDAEFLFVNGAD 78 >ref|NP_511037.1|Gp54 protein Length = 103 Score = 37.4 bits (85), Expect = 0.24 Identities = 18/64 (28%), Positives = 27/64 (42%) Frame = -2 Query: 67163 KKWAVFRARIIELDSGACLECGRTEADGVVLQVHHKHYIRGRKPWEYDPSDCETLCKGCH 66984 K+W R ++ D+ C C + VHH Y++ + S+ E LC CH Sbjct: 23 KEWLSLRQEALKRDNYECQRCKKKGKQRQADCVHHIKYVKEFPAFALTLSNLECLCNQCH 82 Query: 66983 AREH 66972 EH Sbjct: 83 NEEH 86 >ref|YP_164705.1|orf70 Length = 638 Score = 37.0 bits (84), Expect = 0.31 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Frame = +1 Query: 48547 LSIHNYAIVEHLDLELDA-GMTVITGETGAGKSIMLDALGLALGDRTDSG 48693 + I N+ + LD ++D+ G+T+I+G+ G GKS + A+ AL ++T G Sbjct: 6 IKIRNFRSIRSLDFKIDSRGLTLISGKNGQGKSSIYAAILYALFNKTQKG 55 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 396,497,505 Number of Sequences: 14420 Number of extensions: 8257256 Number of successful extensions: 31933 Number of sequences better than 0.5: 24 Number of HSP's better than 0.5 without gapping: 9054 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 31794 length of database: 3,019,461 effective HSP length: 120 effective length of database: 1,289,061 effective search space used: 37144292715 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig46 (94,534 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 119 7e-26 ref|YP_024677.1|gp04 74 3e-12 ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family 70 3e-11 ref|NP_817650.1|gp61 52 1e-05 ref|NP_958675.1|reverse transcriptase 51 2e-05 ref|NP_996568.1|reverse transcriptase 51 2e-05 ref|NP_996616.1|hypothetical protein predicted by GeneMark 51 2e-05 ref|NP_046877.1|putative non-heme haloperoxidase 47 3e-04 ref|NP_758929.1|ORF37 45 0.001 ref|YP_024499.1|putative helicase 43 0.005 ref|NP_958267.1|hypothetical protein 43 0.005 ref|NP_445687.1|putative helicase 40 0.040 ref|NP_818058.1|gp85 38 0.20 ref|NP_795616.1|putative helicase 37 0.44 ref|NP_795446.1|putative DEAD box family helicase 37 0.44 >ref|NP_046572.1|ABC transporter Length = 705 Score = 119 bits (297), Expect = 7e-26 Identities = 126/542 (23%), Positives = 235/542 (43%), Gaps = 14/542 (2%) Frame = -1 Query: 7300 LVFVAKLCNLLV-------PVVLKRIVDGLNVEPSLPMLPVGLLLAYGTSRIGVSLFTEL 7142 +VFV L +L V +K +VD L + SL + + L + + + +F + Sbjct: 167 IVFVILLTSLFVVGLAVAGSFYIKFLVD-LIIPRSLRESLITITLIFISMVLIRCIFDFV 225 Query: 7141 RQVVFARVMARTSRQVTLKVFRHLHGLSLKFHLGRRTGGVARDVERGGSAISDLLDWTLY 6962 R + ++ + ++++ F + L + F R G V + R I + D+ Sbjct: 226 RSYLIIKLSYKVDKEMSNVYFNKVTKLPINFFENREDGEV---ISRFNDGIY-IKDFFSA 281 Query: 6961 SIIPIFLEVILVTTVLVWAYDWR---FAAVTLATLLAYGGWTFAITEWRTRYYRASVEAD 6791 + + +++IL+ + V Y F + L LL + + + +E Sbjct: 282 NFVTAIIDIILILGLGVILYRTNNILFLTIILPILLL-SCLAILFFDHLKKKNQKLMEDK 340 Query: 6790 TRANERAVDSLLNYETVKYFNNEEHEASRYDESLHRLENARVKSTTSLAVLNLGQVVLVS 6611 ++ ++ L N TV N + S + E H + ++ ST S+A + +L Sbjct: 341 AKSTSLLINFLKNMTTVYSLN----KTSFFLEKFHLTYDKQLNSTFSVAKAVISNEILKG 396 Query: 6610 IGVTA----MMWLAAAGVVGGSMTVGDLVLVNAYLLQLSAPLFLLGMMYREVKQALTNME 6443 + + ++W+ V+ SM++G L+ +N L + L + M +++QA Sbjct: 397 LIQNSFTIIILWVGTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHVASI 456 Query: 6442 RLFGLLDERQDVQDSPDAGPLVATRPSVRFEAVRFGYDPRRQILHDVDFEIPAGGTVAVV 6263 R F +++ QDS + + +++ + G DP R I+ D++ + V ++ Sbjct: 457 RFFDVVNYPVQ-QDSNENLTELDFIQNIKTVNLNIGADPMRYIVEDINLILDRKDKVLII 515 Query: 6262 GHSGSGKSTLARLLYRFYDVDGGAILIDGRDIRRLTQASLRGTIAIVPQDTVLFNDSIFY 6083 G SG+GKST A+ L + Y V +I ++G DI R S+R I + ++ LF +I Sbjct: 516 GESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKE 575 Query: 6082 NIRYGXXXXXXXXXXXXXXXXXXXXXXXSLPDGYDTQVGERGLKLSGGEKQRVAIARAIL 5903 N+ G +L Y ++ E G LS G+KQR+A+ARAIL Sbjct: 576 NLCMG-EIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAIL 634 Query: 5902 KNPGILIFDEATSALDSQSERAIQAELEHIQRGRTTLVIAHRLSTVMNADQILVMDGGRI 5723 P +LI DE+ S +D + + I L + ++I H + ++ LV RI Sbjct: 635 HQPQVLILDESLSNIDPDNTKLIYETLHRMD--CLIILITHNDPSNFKYNKKLVFRNNRI 692 Query: 5722 VE 5717 +E Sbjct: 693 IE 694 Score = 46.6 bits (109), Expect = 4e-04 Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 6/218 (2%) Frame = -1 Query: 57559 VRDVSLSVGAGEILAIVGESGSGKTTLANAILGLLPDNARVVSGRLLVAGQDIGRAPERL 57380 V D++L + + + I+GESG+GK+T A ++ L +V + + G DI R Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLY----KVPDKSIYLNGLDINRYDH-- 552 Query: 57379 GRQLRGSVVGLVPQDPMVSLNPTLRIGRQIAEALIRARGSRYPGLDAEVVALLEQ----- 57215 +R +V + NP L G I E L G + + E ++ Q Sbjct: 553 -LSIRKRIV-------YIDENPFLFKG-TIKENL--CMGEIFDQNEIENACIMSQCHEFI 601 Query: 57214 VGLDKPL-LRARQYPHELSGGMRQRVLIAIALAGDPRLIVADEPTSALDVTVQRRILDHL 57038 LDK + + LS G +QR+ +A A+ P++++ DE S +D + I + L Sbjct: 602 CNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETL 661 Query: 57037 ERLVKERGISLLIITHDLGVAADRADRVLVMKDGELVE 56924 R+ +++ITH+ + + ++ LV ++ ++E Sbjct: 662 HRM----DCLIILITHN-DPSNFKYNKKLVFRNNRIIE 694 Score = 45.4 bits (106), Expect = 0.001 Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 7/191 (3%) Frame = -1 Query: 56722 LDGVGLEVHRGQTLAIVGESGSGKSTILRIALGLEKPDRGRVLFDGEDVTGFGWRQFRPL 56543 ++ + L + R + I+GESG+GKST + L K + +G D+ + + Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRY---DHLSI 555 Query: 56542 RRRMQLVQQNPFAALDPRFSIFDSIVEPLVSFG-LAKGRELEVA-----ARRLIDRVRLP 56381 R+R+ + +NPF +F ++ + G + E+E A I + Sbjct: 556 RKRIVYIDENPF--------LFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQ 607 Query: 56380 TAY-LDRLPRELSGGQRQRVAIARXXXXXXXXXXXDEPVSALDVSVQAQILDLLDELQHE 56204 +Y L LS GQ+QR+A+AR DE +S +D L+ E H Sbjct: 608 YSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNID----PDNTKLIYETLHR 663 Query: 56203 LGVAYVLVSHD 56171 + +L++H+ Sbjct: 664 MDCLIILITHN 674 >ref|YP_024677.1|gp04 Length = 90 Score = 73.6 bits (179), Expect = 3e-12 Identities = 34/56 (60%), Positives = 45/56 (80%) Frame = -1 Query: 80602 RELKAGREVSLVGFGAFTVKERAARTGRNPSTGQELEIRAARVPGFKAGKGLKEAV 80435 + L+ G V+L GFG F+V RAARTGRNP+TG+E++I A++ P FKAGKGLK+AV Sbjct: 34 KSLRKGDTVTLTGFGVFSVGARAARTGRNPATGEEIKIPASKAPKFKAGKGLKDAV 89 >ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family Length = 92 Score = 70.5 bits (171), Expect = 3e-11 Identities = 32/54 (59%), Positives = 41/54 (75%) Frame = -1 Query: 80596 LKAGREVSLVGFGAFTVKERAARTGRNPSTGQELEIRAARVPGFKAGKGLKEAV 80435 LK+G +VS+ GFG F V+ERAAR GRNP TG+E++I A + P FK K LK+AV Sbjct: 36 LKSGEKVSIPGFGTFEVRERAARKGRNPQTGEEIDIPATKAPAFKPAKALKDAV 89 >ref|NP_817650.1|gp61 Length = 274 Score = 52.0 bits (123), Expect = 1e-05 Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 17/232 (7%) Frame = +2 Query: 30383 GHTLVLLHGKNFCAATWEGSIAALTKAGYRVVAPDQIGFCKSSKPQHYQYSFQQLAANTR 30562 G LV LHG A +E + L + G+ V A D + ++ + ++ +++ T Sbjct: 24 GVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLP-FGHTVEEMTRVTL 82 Query: 30563 ELLESIGLERYSLMGHSMGGMLATRFALLYPGQLERLILVN-PIGLEDWKALGVPYRTV- 30736 L+++G+++ +GHSMGG + A YP ++ IL++ G E L P R Sbjct: 83 RALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILLDAAAGKEHHANLKDPLRATQ 142 Query: 30737 -----------DQWYARELRTSAEGIRNYQ-LGTYYAGQWRPEFDRWVEMQAGLFQGRGK 30880 D + A +LR++ EG+ Q L + +AG R+V L + Sbjct: 143 RLSGAVVDVLGDTYQAIKLRSATEGLGLAQTLRSSFAG------FRFVRAAYALLKAD-- 194 Query: 30881 ERVAWNSALTYDMIYTQPVYYEFEQLKVPTLLLIGEKDNT---AIGKDAAPA 31027 T+P+ + L V T ++ G D A GK AA A Sbjct: 195 ---------------TEPLLKAMKALDVQTAVIHGLSDQIVPFAAGKSAAEA 231 >ref|NP_958675.1|reverse transcriptase Length = 328 Score = 51.2 bits (121), Expect = 2e-05 Identities = 73/295 (24%), Positives = 103/295 (34%), Gaps = 11/295 (3%) Frame = -2 Query: 49698 LLEAALTRENLRQAFKRV-RANRGSAGVDGLDIDQTARKLVTEWPAIREQLLRGTYRPSP 49522 L++ T ENL A+++ R + G A L A++ +L G Y P Sbjct: 8 LIDQITTWENLLDAYRKTSHGKRRTWGYLEFKEYDLANLL-----ALQAELKAGNYERGP 62 Query: 49521 VRRVMIPKPDGSQRELGIPTVTDRXXXXXXXXXXXXXLDPSFSEHSYGFRPGRRAHDAVL 49342 R ++ +P R + DR + ++Y RP + H V Sbjct: 63 YREFLVYEP--KPRLISALEFKDRLVQHALCNIVAPIFEAGLLPYTYACRPDKGTHAGVC 120 Query: 49341 AAQSFVQSGRRI-VVDVDLEKFFDRVNHDILIDRLRKRIDDAGVIRLIRAYLNAGIMDGG 49165 Q+ ++ R + D KFF ++ L + K+I A RL+R L D G Sbjct: 121 HVQAELRRTRATHFLKSDFSKFFPSIDRAALYAMIDKKIHCAATRRLLRVVLP----DEG 176 Query: 49164 VVIERDQGTPQGGPLSPLLANVLLDEVDRAL--ERRGHCFVRYADDCNVYVRSRRAGERV 48991 V G P G S L ANV VDR L E + + RY DD V V Sbjct: 177 V------GIPIGSLTSQLFANVYGGAVDRLLHDELKQRHWARYMDDIVVLGDDPEELRAV 230 Query: 48990 MNXXXXXXXXXXXRVNEAKSAVASAFGRKFLGYAFWAAPK-------GQVKRKVA 48847 + G FLGY W K + KRKVA Sbjct: 231 FYRLRDFASERLGLKISHWQVAPVSRGINFLGYRIWPTHKLLRKSSVKRAKRKVA 285 >ref|NP_996568.1|reverse transcriptase Length = 328 Score = 51.2 bits (121), Expect = 2e-05 Identities = 73/295 (24%), Positives = 103/295 (34%), Gaps = 11/295 (3%) Frame = -2 Query: 49698 LLEAALTRENLRQAFKRV-RANRGSAGVDGLDIDQTARKLVTEWPAIREQLLRGTYRPSP 49522 L++ T ENL A+++ R + G A L A++ +L G Y P Sbjct: 8 LIDQITTWENLLDAYRKTSHGKRRTWGYLEFKEYDLANLL-----ALQAELKAGNYERGP 62 Query: 49521 VRRVMIPKPDGSQRELGIPTVTDRXXXXXXXXXXXXXLDPSFSEHSYGFRPGRRAHDAVL 49342 R ++ +P R + DR + ++Y RP + H V Sbjct: 63 YREFLVYEP--KPRLISALEFKDRLVQHALCNIVAPIFEAGLLPYTYACRPDKGTHAGVC 120 Query: 49341 AAQSFVQSGRRI-VVDVDLEKFFDRVNHDILIDRLRKRIDDAGVIRLIRAYLNAGIMDGG 49165 Q+ ++ R + D KFF ++ L + K+I A RL+R L D G Sbjct: 121 HVQAELRRTRATHFLKSDFSKFFPSIDRAALYAMIDKKIHCAATRRLLRVVLP----DEG 176 Query: 49164 VVIERDQGTPQGGPLSPLLANVLLDEVDRAL--ERRGHCFVRYADDCNVYVRSRRAGERV 48991 V G P G S L ANV VDR L E + + RY DD V V Sbjct: 177 V------GIPIGSLTSQLFANVYGGAVDRLLHDELKQRHWARYMDDIVVLGDDPEELRAV 230 Query: 48990 MNXXXXXXXXXXXRVNEAKSAVASAFGRKFLGYAFWAAPK-------GQVKRKVA 48847 + G FLGY W K + KRKVA Sbjct: 231 FYRLRDFASERLGLKISHWQVAPVSRGINFLGYRIWPTHKLLRKSSVKRAKRKVA 285 >ref|NP_996616.1|hypothetical protein predicted by GeneMark Length = 328 Score = 51.2 bits (121), Expect = 2e-05 Identities = 73/295 (24%), Positives = 103/295 (34%), Gaps = 11/295 (3%) Frame = -2 Query: 49698 LLEAALTRENLRQAFKRV-RANRGSAGVDGLDIDQTARKLVTEWPAIREQLLRGTYRPSP 49522 L++ T ENL A+++ R + G A L A++ +L G Y P Sbjct: 8 LIDQITTWENLLDAYRKTSHGKRRTWGYLEFKEYDLANLL-----ALQAELKAGNYERGP 62 Query: 49521 VRRVMIPKPDGSQRELGIPTVTDRXXXXXXXXXXXXXLDPSFSEHSYGFRPGRRAHDAVL 49342 R ++ +P R + DR + ++Y RP + H V Sbjct: 63 YREFLVYEP--KPRLISALEFKDRLVQHALCNIVAPIFEAGLLPYTYACRPDKGTHAGVC 120 Query: 49341 AAQSFVQSGRRI-VVDVDLEKFFDRVNHDILIDRLRKRIDDAGVIRLIRAYLNAGIMDGG 49165 Q+ ++ R + D KFF ++ L + K+I A RL+R L D G Sbjct: 121 HVQAELRRTRATHFLKSDFSKFFPSIDRAALYAMIDKKIHCAATRRLLRVVLP----DEG 176 Query: 49164 VVIERDQGTPQGGPLSPLLANVLLDEVDRAL--ERRGHCFVRYADDCNVYVRSRRAGERV 48991 V G P G S L ANV VDR L E + + RY DD V V Sbjct: 177 V------GIPIGSLTSQLFANVYGGAVDRLLHDELKQRHWARYMDDIVVLGDDPEELRAV 230 Query: 48990 MNXXXXXXXXXXXRVNEAKSAVASAFGRKFLGYAFWAAPK-------GQVKRKVA 48847 + G FLGY W K + KRKVA Sbjct: 231 FYRLRDFASERLGLKISHWQVAPVSRGINFLGYRIWPTHKLLRKSSVKRAKRKVA 285 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 47.0 bits (110), Expect = 3e-04 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 1/102 (0%) Frame = +2 Query: 30383 GHTLVLLHGKNFCAATWEGSIAALTKAGYRVVAPDQIGFCKS-SKPQHYQYSFQQLAANT 30559 G LV LHG + A +E + L + G+RV+A D +S S P ++ + + T Sbjct: 22 GAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPT--GHTVEDMTRVT 79 Query: 30560 RELLESIGLERYSLMGHSMGGMLATRFALLYPGQLERLILVN 30685 + L+ + + R GHSMGG + A +P ++ +L++ Sbjct: 80 LKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLD 121 >ref|NP_758929.1|ORF37 Length = 303 Score = 45.1 bits (105), Expect = 0.001 Identities = 39/159 (24%), Positives = 62/159 (38%), Gaps = 8/159 (5%) Frame = -2 Query: 49485 QRELGIPTVTDRXXXXXXXXXXXXXLDPSFSEHSYGFRPGRRAHDAVLAA-QSFVQS--- 49318 +R + P DR D ++ SY R G RA L Q F++ Sbjct: 71 RRLISAPHFKDRVVHRAIYNVIEPLFDKTYIYDSYACRRGERAPTKALTGLQYFIKKVES 130 Query: 49317 --GRRIVVDVDLEKFFDRVNHDILIDRLRKRIDDAGVIRLIRAYLNAGIMDGGVVIERDQ 49144 G+ + D+ ++F ++H +L L +I + L+ I+D Sbjct: 131 KHGKAYALKADISRYFSSIDHQVLKSILEAKIQCQRTLDLLFY-----IIDNSPCESMGV 185 Query: 49143 GTPQGGPLSPLLANVLLDEVDRALERR--GHCFVRYADD 49033 G P G S + ANV L E+DR + ++RY DD Sbjct: 186 GIPLGNLTSQIFANVYLHELDRYAKHALGAKHYIRYMDD 224 >ref|YP_024499.1|putative helicase Length = 582 Score = 43.1 bits (100), Expect = 0.005 Identities = 22/81 (27%), Positives = 42/81 (51%) Frame = -2 Query: 10455 FVLHGEKDQKDRKLAIERLRQGGARVLVATDVAARGLDVDGLDLVINFDMPRSGDEYVHR 10276 + LHGE D + R+ + +R G +V++AT + G+D+ G++ +I +S + + R Sbjct: 473 YFLHGEIDSETRREKLNDMRSGKLKVMIATSLIDEGVDISGINALILGAGGKSLRQTLQR 532 Query: 10275 VGRTGRAGAEGLAVSLICHND 10213 +GR R + + ND Sbjct: 533 IGRALRKKKDDNTTQIFDFND 553 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 43.1 bits (100), Expect = 0.005 Identities = 57/207 (27%), Positives = 66/207 (31%), Gaps = 12/207 (5%) Frame = +1 Query: 69115 PQHHPGVGRARQRPRAVADHPGAARGPRVHPRHPGHARRIANPDAVHPSPHTAGLPADQS 69294 P+ HP V R R R RA P GP VHP PG A A P A +P Sbjct: 69 PRRHPPVARTRPRTRAPECAPDP--GPAVHPAAPGCAP--AAPAAPEYAP---------- 114 Query: 69295 SXXXXXXXXXXXHAAQDVPGNGRHPRWRDERPPAAPDGISPSRRARPTHPPIRTRQTGRT 69474 A + H R R R RA P P R R Sbjct: 115 ---------ALRPRAPECDRGAHHLRTRAPR---------TRTRAVPLGPGARVRTPVED 156 Query: 69475 KESRRRRPMPLPTRSCPTRCRTHVPRNHPSERAPAAFSHQALAVPAAEQ-------PEH- 69630 + RRR P P R R V R + R +A P A + PEH Sbjct: 157 RRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHP 216 Query: 69631 ----RRRQVGIQQGRADKTGEDHHRHR 69699 RR+ G + R H RHR Sbjct: 217 RAVRPRRRTGRRHRRRASLRPRHRRHR 243 >ref|NP_445687.1|putative helicase Length = 559 Score = 40.0 bits (92), Expect = 0.040 Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 3/84 (3%) Frame = -2 Query: 10428 KDRKLAIERLRQGGARVLVATDVAARGLDVDGLDLVINFDMPRSGDEYVHRVGRTGRAG- 10252 ++R IE L+ +VL++T +A GLD+ L LV+ +S + + R+GR R Sbjct: 460 EERMEKIEALKNEKLQVLISTSLADEGLDIPNLRLVVLLTQGKSRIKLIQRIGRVMRVSQ 519 Query: 10251 --AEGLAVSLICHNDWNLMSSVER 10186 +G + +I ++D + SV++ Sbjct: 520 NKRKGYILDVIYNHDLFIKQSVKK 543 >ref|NP_818058.1|gp85 Length = 301 Score = 37.7 bits (86), Expect = 0.20 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Frame = +1 Query: 47713 PPTSQVRWTAGRMCAGG-MHGSLPTSQGAEGAWESIRLPRGSGSIRDRSRPGLPAGPTHS 47889 PP V A + + G H SLP QG G E + RG+G P P GP S Sbjct: 118 PPADMVNTAASLLSSSGDPHESLPHEQGNRGTGEGEQRSRGAGDEEVPLPPEPPPGPYDS 177 Query: 47890 APNMPSTSP 47916 P + T P Sbjct: 178 PPIVVDTEP 186 >ref|NP_795616.1|putative helicase Length = 409 Score = 36.6 bits (83), Expect = 0.44 Identities = 18/73 (24%), Positives = 42/73 (57%) Frame = -2 Query: 10536 RKAIVFTNTRAQADRLYGHLVAAGHKAFVLHGEKDQKDRKLAIERLRQGGARVLVATDVA 10357 ++AIV+T++ + + AG+++ + G+ + +R+ A++ R G R+LV ++ Sbjct: 176 KQAIVYTHSVEASHLVSDMFNQAGYQSQSVSGKTPKSEREEAMQAFRDGKLRILVNCELF 235 Query: 10356 ARGLDVDGLDLVI 10318 G+D+ +D+ I Sbjct: 236 TEGIDLPNVDVCI 248 >ref|NP_795446.1|putative DEAD box family helicase Length = 409 Score = 36.6 bits (83), Expect = 0.44 Identities = 18/73 (24%), Positives = 42/73 (57%) Frame = -2 Query: 10536 RKAIVFTNTRAQADRLYGHLVAAGHKAFVLHGEKDQKDRKLAIERLRQGGARVLVATDVA 10357 ++AIV+T++ + + AG+++ + G+ + +R+ A++ R G R+LV ++ Sbjct: 176 KQAIVYTHSVEASHLVSDMFNQAGYQSQSVSGKTPKSEREEAMQAFRDGKLRILVNCELF 235 Query: 10356 ARGLDVDGLDLVI 10318 G+D+ +D+ I Sbjct: 236 TEGIDLPNVDVCI 248 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 411,855,362 Number of Sequences: 14420 Number of extensions: 8500223 Number of successful extensions: 32578 Number of sequences better than 0.5: 15 Number of HSP's better than 0.5 without gapping: 9072 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 32483 length of database: 3,019,461 effective HSP length: 120 effective length of database: 1,289,061 effective search space used: 40463624790 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig47 (89,439 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 162 5e-39 ref|NP_835691.1|similar to DNA helicase 122 4e-27 ref|NP_818603.1|gp65 104 2e-21 ref|NP_076827.1|Csp 85 1e-15 ref|YP_024988.1|superfamily II DNA 84 3e-15 ref|YP_024431.1|superfamily II DNA 84 3e-15 ref|NP_795678.1|putative helicase 76 6e-13 ref|NP_958716.1|Bbp47 60 3e-08 ref|NP_996608.1|DEAD box helicase 60 3e-08 ref|NP_996656.1|DEAD box helicase 60 3e-08 ref|NP_945089.1|gp58 60 5e-08 ref|NP_803332.1|helicase 55 9e-07 ref|YP_024948.1|gp28 47 3e-04 ref|NP_835600.1|putative glycosyltransferases 45 0.001 ref|NP_818230.1|gp179 44 0.002 ref|NP_817395.1|gp57 42 0.010 ref|NP_051002.1|hypothetical protein 42 0.010 ref|NP_075497.1|hypothetical protein 41 0.017 ref|NP_620626.1|putative transposase 37 0.41 >ref|NP_945090.1|gp59 Length = 429 Score = 162 bits (410), Expect = 5e-39 Identities = 103/428 (24%), Positives = 175/428 (40%), Gaps = 2/428 (0%) Frame = +2 Query: 54890 TPSGAAEKTEYTAAERRQRIFAIVGASSGNLVEWFDFYVYAFCAIYFAPAFFPTADPTVQ 55069 T + A E +++ +R A++ GN EWFDF Y+F ++ A FFP+ D + Sbjct: 3 TSTYAREAAPSASSDTHRR--AVIAVIVGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLS 60 Query: 55070 LLNTAGVFAAGFLMRPIGGWLFGRIADKHGRKTSMLISVLMMCAGSLVIAFLPTYESIGV 55249 LL + GF MRPIGG + G IADK GR+ ++ +++ +M AG+ +I F PTY+ G+ Sbjct: 61 LLLSVSTIGVGFFMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGL 120 Query: 55250 AAPALLLFCRLFQGLSVGGEYGTTATYMSEVALKGKRGFYSSFQYVTXXXXXXXXXXXXX 55429 AP +++ RL QG S GGE G Y+ E + G+Y+S+ + Sbjct: 121 GAPLMIVVARLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAV 180 Query: 55430 XXXXXXSTDELKAWGWRIPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGSMAGLFKH 55609 ++++WGWRIPF E + + + Sbjct: 181 FIVKCLDEQQIESWGWRIPFLLGLGLGPVGIYIRSRLNDPGFPADERLGECAPVVEVVRS 240 Query: 55610 HKAAFITVLGYTAGGSLMFYTFTTYMQKYLVNTAGMDAKTASGIMTFALFCYMLMQPLFG 55789 + G ++ Y Y+ Y + + T + + + PL G Sbjct: 241 FSREALVGFGLVVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIG 300 Query: 55790 ALSDRIGRRTSMLCFAALGALCTLPILATLKXXXXXXXXXXXXXXXXXXVSFYTSIGGIV 55969 LSD GRR + + + P+ A L ++ Y Sbjct: 301 HLSDLFGRRWFLAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAA 360 Query: 55970 KAEMFPPEVRALGVGLSYAIANALFGGTAEYVALGLKSIGHEEV--FYWYVTGMLVIAFL 56143 ++MFP V + G+ +SY +A FGG + + + H + ++ + +V Sbjct: 361 LSDMFPDGVLSTGISISYNLAVITFGGFSAAIITWAIATTHNNLAPAFYVIAAAIVSLIS 420 Query: 56144 FSLRLPKQ 56167 SL P++ Sbjct: 421 VSLWQPRR 428 >ref|NP_835691.1|similar to DNA helicase Length = 670 Score = 122 bits (307), Expect = 4e-27 Identities = 125/501 (24%), Positives = 205/501 (40%), Gaps = 37/501 (7%) Frame = +2 Query: 49967 KEHLSRLESLRDYRPRVPNTLQAELRDYQLEGFDWMARLAKWGVGACLADDMGLGKXXXX 50146 K H L S+ VP + +Q G ++ + K GA +AD+MG GK Sbjct: 81 KNHKLELSSVTSSDFAVPAPTGYDYFPFQKAGVHFVTEVFKEYPGALIADEMGTGKTIQS 140 Query: 50147 XXXXXHRSAEGPQLVVAPTSVTPNWLAETTRFAPTLRLHAYRESRSLDGLGPRDLVVTSY 50326 + + LVV P S+ NW E R+ + +D + + +Y Sbjct: 141 AGVINVMNPDRV-LVVCPASLKYNWERELKRWVVHEKEIIVVNGNEVDFSLKNTIYIINY 199 Query: 50327 GLLQQDAESFAAQRWTTVVLDEAQAIKNAASKRSQAAMAL------QADFRLVATGTPLE 50488 +L + +E A + V++DE IKN +KRS ++ Q L TGTP+ Sbjct: 200 DILHRISEEDYA--YDLVIVDECHYIKNPKTKRSGFVKSIVKSSIEQGGKVLFLTGTPIV 257 Query: 50489 NHLGELWNLFRFINPGLLGSREHFTQRFAGPIE-------RGDQGARKALKALIQPFILR 50647 N EL+ + P + G+ + +R+ RG + L ++R Sbjct: 258 NRPIELYPILEMAAPKVFGNFWGYAKRYCNAYYNGYGWDFRGASNLEELQGKLRSTIMIR 317 Query: 50648 RLKSQVLDELPARTEVVYRVPLSD--AEQHLYEAMRQQALXXXXXXXXXXXXXLRVLTEI 50821 RLK VL ELP ++ + V L+ AE+ +++ + VL E Sbjct: 318 RLKKDVLKELPPKSRKIVPVKLNKMFAEEEIFKLAED---------LQNLKNYISVLREF 368 Query: 50822 TRLRRFCCHPSLVLPDSDLPGSKLAAFAEIVEEL--LDSRHKA----------------- 50944 R+ + + + D K+ E V E+ + HKA Sbjct: 369 ERVGVESADLAEAMAEFD---EKMKVMFERVAEMRRFYAIHKAPFAADYIVSLVKEEEVD 425 Query: 50945 --LVFSQFVDHLSIVRKWLEERGIRYQYLDGATPAKERMARVEAFQGGDGDIFLISLKAG 51118 +VF+ D I++K LE +GI Y + G +R VE FQ G D+ L S+ A Sbjct: 426 GLVVFAHHHDVFEIIQKVLEAKGITYARITGEENVVQRQKAVEDFQSGKVDVVLCSILAA 485 Query: 51119 GTGLNLTAADYVIHLDPWWNPAVEDQASDRAHRMGQQRP-VTIYRLVAENTIEERILALH 51295 G G+ LT A + ++ W P QA DR HR+GQ+ V I+ +VA +T++E Sbjct: 486 GVGITLTRAKTAVFVELDWVPGNILQAEDRLHRIGQEAECVDIHYIVARHTLDENFADYL 545 Query: 51296 GQKRDLADSLLEGGEVSAKLD 51358 +K ++ + L + +L+ Sbjct: 546 TRKIEIIEKALNHERMKTQLE 566 >ref|NP_818603.1|gp65 Length = 653 Score = 104 bits (259), Expect = 2e-21 Identities = 118/544 (21%), Positives = 211/544 (38%), Gaps = 80/544 (14%) Frame = +2 Query: 49970 EHLSRLESLRDYRPRVPNTLQAELRDYQLEGFDWMARLAKWGVGACLADDMGLGKXXXXX 50149 +H L LR +RP + + A+ + +Q+ G ++ + +AD GLGK Sbjct: 105 DHDKLLPYLRQHRPEIVKAM-ADRKPWQIPGAAFVVSQKE----VVIADQPGLGKTLQVI 159 Query: 50150 XXXXHRSAEGPQLVVAP-TSVTPNWLAETTRFA--------------PTLRLHAYRESRS 50284 G LVVAP T+V W E R+ P R +++ Sbjct: 160 AALLEMQTRGAILVVAPKTAVEVTWPDEIARWIGPNENVFVINSEAKPDERKARVLRAKA 219 Query: 50285 LDGLGPRDLVVTSYGLLQQDAE-------------------------SFAAQRWTTVVLD 50389 L G R V+T ++ AE ++ V++D Sbjct: 220 LAEQGERVWVLTGSSYIRIKAEFDDYGNYLRDEKKQKIVRAVGHTVADLFRMSFSAVIVD 279 Query: 50390 EAQAI---------KNAASKRSQAAMALQADF-RLVATGTPLENHLGELWNLFRFINPGL 50539 E+Q + K +A + A+ + R+ +GTP +W ++ P Sbjct: 280 ESQEVLACSTGNKKKWSAQRTGMGALDIVPGAPRIAISGTPFRGKTENIWGTLNWLAPKK 339 Query: 50540 LGSREHFTQRFAGPIERGDQGA-----------RKALKALIQPFILRRLKSQV------- 50665 S + +R G ++ D G K + ++P ++RR +++ Sbjct: 340 YTSYWKWVRRHYGVVDNWDSGEAHMEKGDTIRDEKRFFSELRPILIRRTHAELRRQGFIT 399 Query: 50666 ---------LDELPARTEVVYRVPLSDAEQHLYEAMRQQALXXXXXXXXXXXXXL--RVL 50812 LD ++ V +PL+ +Q Y+ + + A+ + L Sbjct: 400 GEKLYGGTPLDPNDPKSPVAVWLPLTPKQQKQYDQILKDAVITLESLAGEKDEVVVNGSL 459 Query: 50813 TEITRLRRFCCHPSLVLPDSDLPGSKLAAFAEIVEELLDSRHKALVFSQFVDHLSIVRKW 50992 E+ RL++ + +LP +K+ + E + + K +V SQF L ++ + Sbjct: 460 AEMVRLKQVAGSALGLDVKPELPSNKIEWIKNFLSERISAGTKTVVASQFTQFLELLSRE 519 Query: 50993 LEERGIRYQYLDGATPAKERMARVEAFQGGDGD-IFLISLKAGGTGLNLTAADYVIHLDP 51169 ++ GIR+ G T ER FQ G+ + L++ K+GG L L AAD V+ D Sbjct: 520 CDKAGIRHYLYTGKTVGSERARIKHEFQSESGEMVVLLNTKSGGLSLTLDAADDVVVCDQ 579 Query: 51170 WWNPAVEDQASDRAHRMGQQRPVTIYRLVAENTIEERILALHGQKRDLADSLLEGGEVSA 51349 W P ++Q +RA+ + V I+ L + TI+E I L+ Q+ G++ A Sbjct: 580 TWIPDDQEQVENRAYGRERDHNVNIWNLCSLGTIDEDIAVLNLQRE---------GDIFA 630 Query: 51350 KLDA 51361 LD+ Sbjct: 631 VLDS 634 >ref|NP_076827.1|Csp Length = 66 Score = 85.1 bits (209), Expect = 1e-15 Identities = 38/57 (66%), Positives = 45/57 (78%) Frame = -2 Query: 44882 GTVKWFNDEKGFGFITPESGPDLFVHYRSIQSSGFKSLQEGQRVSFVAVKGQKGMQA 44712 GTVKWFN +KGFGFIT E G DLF H+ +IQS GFKSL EGQ+V F +GQ+G+QA Sbjct: 4 GTVKWFNADKGFGFITSEEGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQA 60 >ref|YP_024988.1|superfamily II DNA Length = 489 Score = 83.6 bits (205), Expect = 3e-15 Identities = 113/445 (25%), Positives = 185/445 (41%), Gaps = 45/445 (10%) Frame = +2 Query: 50117 DMGLGKXXXXXXXXXHRSAEGP---QLVVAPTSVTPNWLAETTRFAPT---LRLH----- 50263 +MG GK HR + LV+ PT + P W E +P +H Sbjct: 39 EMGTGKTFTTIALAGHRFNQRQIDGVLVIVPTPIKPVWEWEVRDMSPVPSIAHVHDSGGD 98 Query: 50264 ----AYRESRSLDGLGPRDLVV----TSYGLLQQDAESFAAQRWTTVVLDEAQAIKNAAS 50419 + ES D L + LV+ S G + A +F + VV+DE+ IKNA + Sbjct: 99 KETMRFIESEHEDKL--KYLVIGVEALSQGKAHELALAFVRKHNALVVVDESSRIKNADA 156 Query: 50420 KRSQAAMAL--QADFRLVATGTPLENHLGELWNLFRFINPGLLGSREHFTQRFAGPIERG 50593 R++ A+ A +R++ TGTP+ + +L+ FRF+ ++G + F R I G Sbjct: 157 ARTKKAIRCGDSAAYRMILTGTPITQGIIDLFGQFRFLGEHIIGLKSFFVFRNMYCIMGG 216 Query: 50594 DQGAR-------KALKALIQPFILRRLKSQVLDELPARTEVVYR-VPLSDAEQHLYEAMR 50749 QG + + L I P++ + K++ LD LP E VYR + +S ++ L AM+ Sbjct: 217 FQGKKVLGYQREEELMDKIAPYVYQVKKTECLD-LP---EKVYRSITVSPTKEQL-SAMK 271 Query: 50750 QQALXXXXXXXXXXXXXLRVLTEITRLRRFC--CHPSL-------VLPDSDLPGSKLAAF 50902 + VL +TR ++ P L V P S P K+ A Sbjct: 272 ELKDFFETEQDGDVLTVSTVLDRMTRFQQILGGNFPFLDKDGAYDVKPISG-PNPKMDAM 330 Query: 50903 AEIVEELLDSRHKALVFSQFVDHLSIVRKWLEE-----RGIRYQYLDGATPAKERMARVE 51067 E + + LD K +++++F + + K L E I Y G +R A + Sbjct: 331 LEDIAD-LDRNAKVIIWARFRAEIEQISKRLREVYGDDSVIEYH---GGISESDRKASIP 386 Query: 51068 AFQGGD--GDIFLISLKAGGTGLNLTAADYVIHLDPWWNPAVEDQASDRAHRMGQQRPVT 51241 FQ F+ + + G G+ LT A + + ++ Q+ DR HR GQ+ T Sbjct: 387 RFQDSSDPSRFFVANQQTAGMGITLTIATFAYYYSNSFSLEQRLQSEDRNHRKGQRNVCT 446 Query: 51242 IYRLVAENTIEERILALHGQKRDLA 51316 + + + + K+DLA Sbjct: 447 YIDIWCKADADLMVGRALKSKKDLA 471 >ref|YP_024431.1|superfamily II DNA Length = 472 Score = 83.6 bits (205), Expect = 3e-15 Identities = 113/445 (25%), Positives = 185/445 (41%), Gaps = 45/445 (10%) Frame = +2 Query: 50117 DMGLGKXXXXXXXXXHRSAEGP---QLVVAPTSVTPNWLAETTRFAPT---LRLH----- 50263 +MG GK HR + LV+ PT + P W E +P +H Sbjct: 22 EMGTGKTFTTIALAGHRFNQRQIDGVLVIVPTPIKPVWEWEVRDMSPVPSIAHVHDSGGD 81 Query: 50264 ----AYRESRSLDGLGPRDLVV----TSYGLLQQDAESFAAQRWTTVVLDEAQAIKNAAS 50419 + ES D L + LV+ S G + A +F + VV+DE+ IKNA + Sbjct: 82 KETMRFIESEHEDKL--KYLVIGVEALSQGKAHELALAFVRKHNALVVVDESSRIKNADA 139 Query: 50420 KRSQAAMAL--QADFRLVATGTPLENHLGELWNLFRFINPGLLGSREHFTQRFAGPIERG 50593 R++ A+ A +R++ TGTP+ + +L+ FRF+ ++G + F R I G Sbjct: 140 ARTKKAIRCGDSAAYRMILTGTPITQGIIDLFGQFRFLGEHIIGLKSFFVFRNMYCIMGG 199 Query: 50594 DQGAR-------KALKALIQPFILRRLKSQVLDELPARTEVVYR-VPLSDAEQHLYEAMR 50749 QG + + L I P++ + K++ LD LP E VYR + +S ++ L AM+ Sbjct: 200 FQGKKVLGYQREEELMDKIAPYVYQVKKTECLD-LP---EKVYRSITVSPTKEQL-SAMK 254 Query: 50750 QQALXXXXXXXXXXXXXLRVLTEITRLRRFC--CHPSL-------VLPDSDLPGSKLAAF 50902 + VL +TR ++ P L V P S P K+ A Sbjct: 255 ELKDFFETEQDGDVLTVSTVLDRMTRFQQILGGNFPFLDKDGAYDVKPISG-PNPKMDAM 313 Query: 50903 AEIVEELLDSRHKALVFSQFVDHLSIVRKWLEE-----RGIRYQYLDGATPAKERMARVE 51067 E + + LD K +++++F + + K L E I Y G +R A + Sbjct: 314 LEDIAD-LDRNAKVIIWARFRAEIEQISKRLREVYGDDSVIEYH---GGISESDRKASIP 369 Query: 51068 AFQGGD--GDIFLISLKAGGTGLNLTAADYVIHLDPWWNPAVEDQASDRAHRMGQQRPVT 51241 FQ F+ + + G G+ LT A + + ++ Q+ DR HR GQ+ T Sbjct: 370 RFQDSSDPSRFFVANQQTAGMGITLTIATFAYYYSNSFSLEQRLQSEDRNHRKGQRNVCT 429 Query: 51242 IYRLVAENTIEERILALHGQKRDLA 51316 + + + + K+DLA Sbjct: 430 YIDIWCKADADLMVGRALKSKKDLA 454 >ref|NP_795678.1|putative helicase Length = 440 Score = 75.9 bits (185), Expect = 6e-13 Identities = 87/343 (25%), Positives = 144/343 (41%), Gaps = 22/343 (6%) Frame = +2 Query: 50369 WTTVVLDEAQAIKNAASKRSQAAMALQADF-RLVA-TGTPLENHLGELWNLFRFINPG-- 50536 +T VV+DE + K++ SKR +A ++ RLV TGTP N L +LW ++ G Sbjct: 118 FTFVVIDELSSFKSSKSKRFRALRKVRPKVQRLVGLTGTPAPNSLIDLWPQIYLMDRGAR 177 Query: 50537 LLGSREHFTQRFAGPIERGD---------QGARKALKALIQPFILRRLKSQVLDELPART 50689 L S+ F ++ P +R GA + I+ + +K++ +LP RT Sbjct: 178 LETSQTRFKDKYFVPDKRNGLIIYSWALRDGAEAEIYNKIEDICVS-MKAKDYLKLPPRT 236 Query: 50690 EVVYRVPLSDAEQHLYEAMRQQALXXXXXXXXXXXXXLRVLTEITRLRRFCCHPSLVLPD 50869 V V LS+ + Y+ + + + ++ ++ + D Sbjct: 237 NNVVSVKLSNMKA--YKQLEADLVLEFKNKEISAANSAVLANKLLQMANGAIY------D 288 Query: 50870 SD-----LPGSKLAAFAEIVEELLDSRHKALVFSQFVDHLSIVRKWLEERGIRYQYLDGA 51034 D + KL A +VEE LVF Q+ L ++K Sbjct: 289 DDKATVAIHDDKLDALENVVEE--SQGQPILVFYQYQHDLERLKKRF------------- 333 Query: 51035 TPAKERMARVEAFQGGDGDIFLISLKAGGTGLNLTAADYVIHLDPW----WNPAVEDQAS 51202 P E + V+ + G I L ++ G GLNL ++I W W+ QA+ Sbjct: 334 -PQAEELTSVDKWNSGKIPILLCHPQSAGHGLNLQKGGHII---VWFGLTWSLEYYQQAN 389 Query: 51203 DRAHRMGQQRPVTIYRLVAENTIEERILALHGQKRDLADSLLE 51331 R R GQ PV ++ +VAENT++E++L + K ++LLE Sbjct: 390 ARLDRQGQTEPVIVHHIVAENTVDEKVLRILQGKEKNQNALLE 432 >ref|NP_958716.1|Bbp47 Length = 464 Score = 60.1 bits (144), Expect = 3e-08 Identities = 102/421 (24%), Positives = 163/421 (38%), Gaps = 36/421 (8%) Frame = +2 Query: 50177 GPQLVVAPTSVTPN-WLAETTRFAPTLRLHAYR-----ESRSLDGLGPRDLVVTSYGLLQ 50338 GP LV+AP V + W E+T++A + E R P ++ T+Y L Sbjct: 52 GPSLVLAPLRVAASTWPDESTKWAHLRNVEVSAVVGTPEQRRAALKRPANVFTTNYDNLP 111 Query: 50339 QDAESFAAQRWT--TVVLDEAQAIKN----AASKRSQAAMAL---QADFRLVATGTPLEN 50491 E RW VV DE+ +K+ KR+ A + + D + TGTP N Sbjct: 112 WLIEHLG-DRWPFRKVVADESTKLKSFRLQQGGKRAHALGRVAHAKVDRFIELTGTPSPN 170 Query: 50492 HLGELWNLFRFINPGLLGSREH--FTQRFAGPIERGDQGARKALKALIQPFILRRLKSQV 50665 L +LW F++ G R F R+ I+ G R A++ PF ++++ ++ Sbjct: 171 GLQDLWGQAWFLDKGERLGRSFGAFKSRWFQSIQVGSD--RHAVRLEPLPFAQQQIEDRL 228 Query: 50666 LD---ELPARTEV--------VYRVPLSDAEQHLYEAMRQQALXXXXXXXXXXXXXLRVL 50812 D L AR V RV L + LY M ++A Sbjct: 229 RDLCLSLDARDYFDISEPIVNVVRVELPAKARRLYRDMEREAFLALECGIEIEAFNAASK 288 Query: 50813 T-EITRLRRFCCHPSLVLPD-SDLPGSKLAAFAEIVEELLDSRHKALVFSQFVDHLSIVR 50986 T + +L + +D+ KL A IV E LV F L+ ++ Sbjct: 289 TIKCLQLANGAIYTDDTATTWADVHDVKLQALESIVAEAAGM--PVLVAYHFKSDLARLQ 346 Query: 50987 KWLEERGIRYQYLDGATPAKERMARVEAFQGGDGDIFLISLKAGGTGLNLTAADYVI-HL 51163 + + + LD + + + G + + G GLNL ++ Sbjct: 347 RAFPQG----RALD------QNPQTIRDWNAGKIPLLFAHPASAGHGLNLQDGGNILAFF 396 Query: 51164 DPWWN-----PAVEDQASDRAHRMGQQRPVTIYRLVAENTIEERILALHGQKRDLADSLL 51328 WW+ +E R + G RPV IY +VA +T++E ++A KR++ D LL Sbjct: 397 GHWWDLEQYQQIIERIGPTRQAQAGHDRPVFIYHIVATDTMDELVMARRESKREVQDLLL 456 Query: 51329 E 51331 E Sbjct: 457 E 457 >ref|NP_996608.1|DEAD box helicase Length = 464 Score = 60.1 bits (144), Expect = 3e-08 Identities = 102/421 (24%), Positives = 163/421 (38%), Gaps = 36/421 (8%) Frame = +2 Query: 50177 GPQLVVAPTSVTPN-WLAETTRFAPTLRLHAYR-----ESRSLDGLGPRDLVVTSYGLLQ 50338 GP LV+AP V + W E+T++A + E R P ++ T+Y L Sbjct: 52 GPSLVLAPLRVAASTWPDESTKWAHLRNVEVSAVVGTPEQRRAALKRPANVFTTNYDNLP 111 Query: 50339 QDAESFAAQRWT--TVVLDEAQAIKN----AASKRSQAAMAL---QADFRLVATGTPLEN 50491 E RW VV DE+ +K+ KR+ A + + D + TGTP N Sbjct: 112 WLIEHLG-DRWPFRKVVADESTKLKSFRLQQGGKRAHALGRVAHAKVDRFIELTGTPSPN 170 Query: 50492 HLGELWNLFRFINPGLLGSREH--FTQRFAGPIERGDQGARKALKALIQPFILRRLKSQV 50665 L +LW F++ G R F R+ I+ G R A++ PF ++++ ++ Sbjct: 171 GLQDLWGQAWFLDKGERLGRSFGAFKSRWFQSIQVGSD--RHAVRLEPLPFAQQQIEDRL 228 Query: 50666 LD---ELPARTEV--------VYRVPLSDAEQHLYEAMRQQALXXXXXXXXXXXXXLRVL 50812 D L AR V RV L + LY M ++A Sbjct: 229 RDLCLSLDARDYFDISEPIVNVVRVELPAKARRLYRDMEREAFLALECGIEIEAFNAASK 288 Query: 50813 T-EITRLRRFCCHPSLVLPD-SDLPGSKLAAFAEIVEELLDSRHKALVFSQFVDHLSIVR 50986 T + +L + +D+ KL A IV E LV F L+ ++ Sbjct: 289 TIKCLQLANGAIYTDDTATTWADVHDVKLQALESIVAEAAGM--PVLVAYHFKSDLARLQ 346 Query: 50987 KWLEERGIRYQYLDGATPAKERMARVEAFQGGDGDIFLISLKAGGTGLNLTAADYVI-HL 51163 + + + LD + + + G + + G GLNL ++ Sbjct: 347 RAFPQG----RALD------QNPQTIRDWNAGKIPLLFAHPASAGHGLNLQDGGNILAFF 396 Query: 51164 DPWWN-----PAVEDQASDRAHRMGQQRPVTIYRLVAENTIEERILALHGQKRDLADSLL 51328 WW+ +E R + G RPV IY +VA +T++E ++A KR++ D LL Sbjct: 397 GHWWDLEQYQQIIERIGPTRQAQAGHDRPVFIYHIVATDTMDELVMARRESKREVQDLLL 456 Query: 51329 E 51331 E Sbjct: 457 E 457 >ref|NP_996656.1|DEAD box helicase Length = 464 Score = 60.1 bits (144), Expect = 3e-08 Identities = 102/421 (24%), Positives = 163/421 (38%), Gaps = 36/421 (8%) Frame = +2 Query: 50177 GPQLVVAPTSVTPN-WLAETTRFAPTLRLHAYR-----ESRSLDGLGPRDLVVTSYGLLQ 50338 GP LV+AP V + W E+T++A + E R P ++ T+Y L Sbjct: 52 GPSLVLAPLRVAASTWPDESTKWAHLRNVEVSAVVGTPEQRRAALKRPANVFTTNYDNLP 111 Query: 50339 QDAESFAAQRWT--TVVLDEAQAIKN----AASKRSQAAMAL---QADFRLVATGTPLEN 50491 E RW VV DE+ +K+ KR+ A + + D + TGTP N Sbjct: 112 WLIEHLG-DRWPFRKVVADESTKLKSFRLQQGGKRAHALGRVAHAKVDRFIELTGTPSPN 170 Query: 50492 HLGELWNLFRFINPGLLGSREH--FTQRFAGPIERGDQGARKALKALIQPFILRRLKSQV 50665 L +LW F++ G R F R+ I+ G R A++ PF ++++ ++ Sbjct: 171 GLQDLWGQAWFLDKGERLGRSFGAFKSRWFQSIQVGSD--RHAVRLEPLPFAQQQIEDRL 228 Query: 50666 LD---ELPARTEV--------VYRVPLSDAEQHLYEAMRQQALXXXXXXXXXXXXXLRVL 50812 D L AR V RV L + LY M ++A Sbjct: 229 RDLCLSLDARDYFDISEPIVNVVRVELPAKARRLYRDMEREAFLALECGIEIEAFNAASK 288 Query: 50813 T-EITRLRRFCCHPSLVLPD-SDLPGSKLAAFAEIVEELLDSRHKALVFSQFVDHLSIVR 50986 T + +L + +D+ KL A IV E LV F L+ ++ Sbjct: 289 TIKCLQLANGAIYTDDTATTWADVHDVKLQALESIVAEAAGM--PVLVAYHFKSDLARLQ 346 Query: 50987 KWLEERGIRYQYLDGATPAKERMARVEAFQGGDGDIFLISLKAGGTGLNLTAADYVI-HL 51163 + + + LD + + + G + + G GLNL ++ Sbjct: 347 RAFPQG----RALD------QNPQTIRDWNAGKIPLLFAHPASAGHGLNLQDGGNILAFF 396 Query: 51164 DPWWN-----PAVEDQASDRAHRMGQQRPVTIYRLVAENTIEERILALHGQKRDLADSLL 51328 WW+ +E R + G RPV IY +VA +T++E ++A KR++ D LL Sbjct: 397 GHWWDLEQYQQIIERIGPTRQAQAGHDRPVFIYHIVATDTMDELVMARRESKREVQDLLL 456 Query: 51329 E 51331 E Sbjct: 457 E 457 >ref|NP_945089.1|gp58 Length = 297 Score = 59.7 bits (143), Expect = 5e-08 Identities = 68/293 (23%), Positives = 117/293 (39%), Gaps = 4/293 (1%) Frame = +3 Query: 22893 PLDSLSGFIVFVQVAETRSFVAAGRVLGISASAVGKRVARLEEKLGVRLFHRSTRSIALT 23072 PL L + F A +F A L ++ AV K+V +LE LG LF R +++ LT Sbjct: 5 PLPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLT 64 Query: 23073 AEGALFLERSRRILAE-IEATELALSRTAGAXXXXXXXXXXXXXXXXXXXXADFMAEYPE 23249 G + +R ILA+ +EAT L + A+F AE+PE Sbjct: 65 RAGQQYADRVHAILADCVEATALVMKEQT-PHSLTIACASGTATLFLADRIAEFSAEHPE 123 Query: 23250 IELDLDFTDRLVDVIDEGFDV-VVRTGQLSDSRLSARRLGAFRLLVVGSPDYLERRGVPR 23426 + + + + + ++ FD+ V + ++ + A + +P +L R VP Sbjct: 124 VSVRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVP- 182 Query: 23427 RPADLAGHACLHYRFSNTGKLEPWP--LRRLPDEPEPQLPVSMVCNNIETRVCFAQRGRG 23600 P DL A L + W R E + ++ N+ + A G G Sbjct: 183 -PQDLM-EATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHG 240 Query: 23601 LACLPDFAIRGALAEGRLRSVLDDYMEGTGYFYLLWPSGRQVSPRLRAFIDFL 23759 I + G+L D + G + ++WP+ R+ +P + F ++L Sbjct: 241 AILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWL 293 >ref|NP_803332.1|helicase Length = 423 Score = 55.5 bits (132), Expect = 9e-07 Identities = 75/321 (23%), Positives = 132/321 (41%), Gaps = 19/321 (5%) Frame = +2 Query: 50378 VVLDEAQAIKNAASKRSQAAMA-LQADFRLVA-TGTPLENHLGELWNLFRFINPG--LLG 50545 VV+DE K+ S+R ++ L R + TGTP N L +LW I+ G L Sbjct: 96 VVIDELSTFKSPKSQRFKSIKKKLPLINRFIGLTGTPSPNSLQDLWAQVYLIDRGERLES 155 Query: 50546 SREHFTQRFAGPIERGDQ---------GARKALKALIQPFILRRLKSQVLDELPARTEVV 50698 S + +R+ P + + G+ + + I+ L LD +P R + Sbjct: 156 SFSRYRERYFKPTHQVSEHVFNWELRDGSEEKIYERIEDICLSMKAKDYLD-MPDRVDTK 214 Query: 50699 YRVPLSDAEQHLY-EAMRQQALXXXXXXXXXXXXXLRVLTEITRLRRFCCHPSLVLPDSD 50875 V LS+ E+ +Y E + L + ++ +L + ++ D D Sbjct: 215 QTVVLSEKERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLS----NGAVYTDDED 270 Query: 50876 ---LPGSKLAAFAEIVEELLDSRHKALVFSQFV-DHLSIVRKWLEERGIRYQYLDGATPA 51043 + KL EI+EE L+F F D I++++ E AT Sbjct: 271 VRLIHDKKLDKLEEIIEE--SQGQPILLFYNFKHDKERILQRFKE-----------ATTL 317 Query: 51044 KERMARVEAFQGGDGDIFLISLKAGGTGLNLTAADYVI-HLDPWWNPAVEDQASDRAHRM 51220 ++ + E + GD + + + G GLNL ++I W+ + QA+ R +R Sbjct: 318 EDSNYK-ERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARLYRQ 376 Query: 51221 GQQRPVTIYRLVAENTIEERI 51283 GQ I+ ++ +NTI++R+ Sbjct: 377 GQNHTTIIHHIMTDNTIDQRV 397 >ref|YP_024948.1|gp28 Length = 459 Score = 47.0 bits (110), Expect = 3e-04 Identities = 75/307 (24%), Positives = 117/307 (38%), Gaps = 20/307 (6%) Frame = +2 Query: 50471 TGTPLENHLGELWNLFRFINPG--LLGSREHFTQRFAGPIERGDQGARKALKALIQPFIL 50644 TGTP N L +LW F++ G L S F +R+ + G+ + A Q I Sbjct: 157 TGTPSPNGLQDLWGQQWFVDGGQRLGRSFSAFEERWFQSVPGGNGYRQTRPLAHAQDEIQ 216 Query: 50645 RRLKSQVLDELPA----RTEVVYR---VPLSDAEQHLYEAMRQQALXXXXXXXXXXXXXL 50803 + L + PA E + R V L A + LY M +Q Sbjct: 217 KALADCTISLDPADWFDLDEPIVRPVYVELPAAARRLYRDMERQMFMEIDDSPIEAMNAA 276 Query: 50804 RVLTEITRLRRFCCHP-----SLVLPDSDLPGSKLAAFAEIVEELLDSRHKALVFSQFVD 50968 + +L + S P ++ KL A EIVEE + LV F Sbjct: 277 SKTMKCLQLANGAVYKQEDDGSDTAPWHEVHDLKLQALEEIVEEA--AGMPVLVAYHFKS 334 Query: 50969 HLSIVRKWLEERGIRYQYLDGATPAKERMARVEAFQGGDGDIFLISLKAGGTGLNLTAAD 51148 L+ +++ R + LD + + + G + + G GLNL Sbjct: 335 DLARLQRAFP----RGRQLD------QNPQTIRDWNAGKIPVMFAHPASAGHGLNLQDGG 384 Query: 51149 YVIHL-DPWWN-----PAVEDQASDRAHRMGQQRPVTIYRLVAENTIEERILALHGQKRD 51310 ++ + WWN VE R + G +RPV IY ++A +TI+E ++ KR Sbjct: 385 NILAVFGHWWNLEEYLQIVERIGPVRQLQAGHRRPVFIYPIIARDTIDEDVVERRETKRA 444 Query: 51311 LADSLLE 51331 + D LL+ Sbjct: 445 VQDILLD 451 >ref|NP_835600.1|putative glycosyltransferases Length = 484 Score = 45.1 bits (105), Expect = 0.001 Identities = 73/312 (23%), Positives = 119/312 (38%), Gaps = 47/312 (15%) Frame = +1 Query: 41635 VRHSVLVPGAGYREQAGIYEVPAPLLPFAKGYRFPLRRAPWRQQLQHLQPDLIEVGDPYV 41814 V H P AG + I P L+ +GY A + ++ +PD++ + + Sbjct: 36 VVHPPRSPRAGETKNVVIGNTPVKLINSPRGYADD--PAFVMKVVEDEKPDVLVI---FT 90 Query: 41815 TAWAALDAGRRL-------NIPVVGFYHSDLPRLAAKRVGAW--CGERVNDYVAYLYGQF 41967 WA ++L N+P+V ++ D + W C E + + Sbjct: 91 DPWAYHPFMQQLSYWIIERNLPLVYYHVWDNFPAPLYNIPFWHTCNEVIG---ISMKSTI 147 Query: 41968 DRVLAPSRIMAEKLLRLGVREVFVQPLGVDLEVFQPMRRDPGLKRELGLS-----EETRL 42132 + LA + A ++ EVF P V+ VF+ M R + GL +++ + Sbjct: 148 NVQLAKEYVEAYEITMYRDPEVFYLPHAVEPNVFKRMDRKKAREFVRGLVGDRMFDDSVI 207 Query: 42133 MIFAGRGAREKNL----HILLEVARRLGAPYHLLL--------VGADMPRRVPDN----- 42261 ++ R KNL + L + +HLL+ VG D+P + D Sbjct: 208 WLYNNRNISRKNLMDTIYAFLVYMLKNYRKHHLLIIKSDPVVPVGTDIPAFLADINSFFH 267 Query: 42262 ----------VTVIND--FQPAA----AVARLMASSDVLLHAGDQETFGLVVLEAMACGI 42393 V + ND F +A L +DV+L E FG+ LEA CG Sbjct: 268 YRDIDLREHIVFISNDEVFHNGGFSREEIALLYNGADVVLQLSSNEGFGIASLEASLCGA 327 Query: 42394 PVVAARAGALAE 42429 PVVA G +A+ Sbjct: 328 PVVATMTGGIAD 339 >ref|NP_818230.1|gp179 Length = 620 Score = 44.3 bits (103), Expect = 0.002 Identities = 92/412 (22%), Positives = 152/412 (36%), Gaps = 51/412 (12%) Frame = +2 Query: 50243 APTLRLHAYRESRSLDGLGPRDLVVTSYGLLQQD---AESFAAQRWTTVVLDEAQAIKNA 50413 A RL Y+E PR +V +Y L+ D E + VLDE + A Sbjct: 200 AKATRLRRYQE--------PRQGLVLNYEKLRVDFDALEEMVRGKRVLFVLDECHKVI-A 250 Query: 50414 ASKRSQAAMALQADFRL-----------VATGTPLENHLGELWNLFRFINPGLLGSREHF 50560 S +QA AL R+ V G+PL ++++L LG++E F Sbjct: 251 ESGANQARKALDKLVRICTATIWPMSATVVGGSPLR--FRDVFSLDGHPKSNPLGTKEDF 308 Query: 50561 TQRFAGPIE---------------------------RGDQGARKALKALIQPFILRRLKS 50659 R+A + R G R P I + K Sbjct: 309 VSRYAEKVTNIPIVTKSGGRFSITRYDWDLDALHEVRHRVGDRTMAVRKTDPGIREQFKG 368 Query: 50660 --------QVLDELPARTEVVYRVPLSDAEQHLYEAMRQQALXXXXXXXXXXXXXLRVLT 50815 + DEL A +Y + L+DA+ E + + L+ T Sbjct: 369 IECIPEWVPMTDELAA----IYDLILADAKVARDEGLSRAPHYLAMRVASINPAALQFST 424 Query: 50816 EITRLRRFCCHPSLVLPDSDLPGSKLAAFAEIVEELLDSRHKALVFSQFVDHLSIVRKWL 50995 + + HP L +K+ + +E + +S+ KA+VF + + + Sbjct: 425 NDIAAQIWAEHPELCQAKFS---AKIEMLNDRLESIRESQDKAIVFCHWTSMGILPLQHH 481 Query: 50996 EERGIRYQYLDGATPAKERMARVEAFQGGDGDIFLISLKAGGTGLNLTAADYVIHLDPWW 51175 + Y G T A+E A + F+ ++ AG GLN+ A YVI+ DP + Sbjct: 482 LKVPYVLHYGTGQT-ARESQAAQDRFKADPDLTCFLTSDAGSHGLNMQEARYVINTDPLY 540 Query: 51176 NPAVEDQASDRAHRMGQQRP-VTIYRLVAENT-IEERILALHGQKRDLADSL 51325 + Q + R R +T Y ++ E + +E RI + Q+R LA+++ Sbjct: 541 SYDDLTQRNARIDRADSHLDGLTAYVMITEESKVENRIWQVCEQRRQLAEAV 592 >ref|NP_817395.1|gp57 Length = 287 Score = 42.0 bits (97), Expect = 0.010 Identities = 24/105 (22%), Positives = 44/105 (41%) Frame = -2 Query: 19649 PWPNACCATSGGGGNWSAAISTPSPNCRNASHLPRKISRWSARPSKPSTGYWTACPCAPA 19470 P+ + ++ G WSAA S R+A+ + WSA S + W+A A Sbjct: 139 PFAWSAAWSAAGSAAWSAAWSAAGSAARSAAGSAAGSAAWSAAGSAAWSAAWSAAESAAG 198 Query: 19469 EPSCSTGWTASANRPSPSGWASPWQRSNATCDAPTSTA*RGTPNS 19335 + S W+A+ + + W++ W + + + +A R S Sbjct: 199 SAAWSAAWSAAGS----AAWSAAWSAAGSAAGSAAESAARSAAGS 239 >ref|NP_051002.1|hypothetical protein Length = 460 Score = 42.0 bits (97), Expect = 0.010 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%) Frame = +2 Query: 51119 GTGLNLT-AADYVIHLDPWWN-----PAVEDQASDRAHRMGQQRPVTIYRLVAENTIEER 51280 G GLNL + ++ WW+ +E R + G RPV I+ +VA++T++E Sbjct: 379 GHGLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEV 438 Query: 51281 ILALHGQKRDLADSLLE 51331 ++ KR + D LLE Sbjct: 439 VMERRNSKRAIQDLLLE 455 >ref|NP_075497.1|hypothetical protein Length = 116 Score = 41.2 bits (95), Expect = 0.017 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Frame = +2 Query: 51044 KERMARVEAFQGGDGDIFLISLKAGGTGLNLTAADYVI-HLDPWWNPAVEDQASDRAHRM 51220 K+ A+ + GD + + + G GLNL ++I W+ + QA+ R +R Sbjct: 10 KDSKAKERRWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARLYRQ 69 Query: 51221 GQQRPVTIYRLVAENTIEERI 51283 GQ I+ ++ +NTI++++ Sbjct: 70 GQNHTTIIHHIMTDNTIDQKV 90 >ref|NP_620626.1|putative transposase Length = 362 Score = 36.6 bits (83), Expect = 0.41 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = -2 Query: 89309 RHPQTNGKDERFHRSLKAEVLNGRSFHTLHQAQEAFDNWRVVYNHQRPHEALRMVTP 89139 R PQ+NGK ERFH++ + Q +++ YN +R H++L TP Sbjct: 295 RSPQSNGKIERFHQNYTKLFVFEEKILNAVSLQNKLNDYYYFYNFERVHKSLNFQTP 351 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 405,760,134 Number of Sequences: 14420 Number of extensions: 8465525 Number of successful extensions: 31848 Number of sequences better than 0.5: 19 Number of HSP's better than 0.5 without gapping: 9031 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 31755 length of database: 3,019,461 effective HSP length: 120 effective length of database: 1,289,061 effective search space used: 38274799212 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig48 (113,804 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_861955.1|gp52 topoisomerase II, medium subunit 124 2e-27 ref|NP_047372.1|putative maturation protein 113 4e-24 ref|NP_049875.1|gp52 topoisomerase II, medium subunit 112 7e-24 ref|NP_046572.1|ABC transporter 110 3e-23 ref|NP_039614.1|gene IV product 109 5e-23 ref|NP_510894.1|phage assembly protein 105 7e-22 ref|NP_040579.1|G IV protein 105 9e-22 ref|NP_891840.1|topoisomerase medium subunit 101 1e-20 ref|NP_944225.1|gp52 topoisomerase II medium subunit 94 3e-18 ref|NP_047359.1|maturation protein 92 8e-18 ref|NP_932596.1|topoisomerase II medium subunit 92 8e-18 ref|NP_899529.1|topoisomerase II small subunit 89 1e-16 ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family 74 4e-12 ref|YP_024677.1|gp04 72 1e-11 ref|YP_025041.1|putative transposase B 62 1e-08 ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase 56 6e-07 ref|NP_945089.1|gp58 56 8e-07 ref|NP_795486.1|hypothetical protein 53 7e-06 ref|NP_958229.1|gene 55 protein 51 2e-05 ref|NP_112719.1|ORF56 49 1e-04 ref|NP_818317.1|gp16 47 5e-04 ref|NP_817446.1|gp108 45 0.002 ref|NP_859396.1|hypothetical protein 44 0.002 ref|NP_958259.1|hypothetical protein 43 0.006 ref|NP_958267.1|hypothetical protein 42 0.009 ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase 41 0.027 ref|NP_818074.1|gp109 41 0.027 ref|YP_195136.1|contractile sheath protein gp18 37 0.30 ref|YP_006601.1|Gp21 37 0.30 ref|YP_024843.1|Pas57 37 0.30 ref|NP_542287.1|unknown 37 0.39 ref|NP_599072.1|unknown 37 0.39 ref|NP_695166.1|minor capsid protein 37 0.39 ref|YP_025027.1|putative terminase large subunit 37 0.39 ref|NP_076659.1|Orf5 37 0.39 >ref|NP_861955.1|gp52 topoisomerase II, medium subunit Length = 441 Score = 124 bits (311), Expect = 2e-27 Identities = 88/302 (29%), Positives = 142/302 (47%), Gaps = 3/302 (0%) Frame = -2 Query: 111307 NIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVVG 111128 N++ + L YAM + RA+P+ DG KPV R V+ +L + + K A + G Sbjct: 7 NLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVHRALDLARGNKEKFHKLASIAG 66 Query: 111127 DVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLA 110948 V + HG+++ D MA ++ Y L+DGQGNFGS AAA RY R++K Sbjct: 67 GVADLGYHHGESSAQDAGALMANTWNNNYPLLDGQGNFGSRTVQKAAASRYIFARVSKNF 126 Query: 110947 HELLADLDKETVDWVPNYDGTEQIPA--VMPTRIPNLLVNGSSGIAVGMATNIPPHNLTE 110774 + + D ++ P ++ E IP +P IP +L+NG SGIA G ATNI PH+ Sbjct: 127 YNVYKD-----TEYAPAHEDKEHIPPKFYLPI-IPTVLLNGVSGIATGYATNILPHSFKS 180 Query: 110773 VIDGCLALIDDPELTIDQLMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIY-IRARAEI 110597 V L + +T P +FP RG ++ + R EI Sbjct: 181 VKKAVLQALQGKNVT-------KPKVEFPEF----------------RGEVHEVDGRYEI 217 Query: 110596 EDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVVIEL 110417 K R Q+ +TE+PY+ ++ + K+ + +++K G+ D+ + G ++ Sbjct: 218 HGTYKFTSRTQMQITEIPYKFDRETYVSKVLDPLEDK---GLISWEDDCGEHGFGFKVKF 274 Query: 110416 RR 110411 R+ Sbjct: 275 RK 276 >ref|NP_047372.1|putative maturation protein Length = 500 Score = 113 bits (282), Expect = 4e-24 Identities = 79/261 (30%), Positives = 126/261 (48%), Gaps = 1/261 (0%) Frame = +2 Query: 76916 SVVVDANRNAIIYKGSGQEWLKLRPLLEELDRPVPSVIIDVLLAEVNLNDREGLGVDWQN 77095 SV + N NA+I G+ Q+ KL LL +D P + I+ ++ E L D LGV+ Q Sbjct: 189 SVEILPNTNALIVSGTAQQLEKLDVLLSAIDVPQRQIFIEAVITETELGDNSELGVNLQA 248 Query: 77096 ITGSLGSKQLIFGTANGIGSSGLNISA-LNSAGQTKATLNAFYDNNQAVIRSSPKLMVRS 77272 G N + +S L + + +G A + A ++ + S P +++ Sbjct: 249 AFDKAGF------VTNLVNASKLKDNLFIFESGDFNALVKAISGSSDTRLLSRPNILIMD 302 Query: 77273 GEEATIEVGNEIPVVTGTTQSTDTDNAPITQTVQYRKTGVLLNIKPTVQASGVVDLKISQ 77452 E I VG +P + ++ TD Q ++ + GV L + P V V+ L I+Q Sbjct: 303 RERGYITVGQNVPFLVS---NSTTDGGTSVQRIERKDVGVSLEVTPHVMGDDVI-LVINQ 358 Query: 77453 ELSESTDTGTGDTLTPIINNRRVETALTLRDGGSVMLAGLISSSKGKGDNGVPLLGDLPW 77632 E S TD+ + I N R + T + ++ G +++L GLIS K ++GVP+L D P Sbjct: 359 ESSSVTDSTIAADI--ITNKRTLMTTVAVKSGQTIVLGGLISDEKRNVESGVPVLKDTPL 416 Query: 77633 IGNLFKSQSNSETRTELIVMI 77695 IG LF+S S + EL V+I Sbjct: 417 IGGLFRSTSTKNVQKELRVVI 437 >ref|NP_049875.1|gp52 topoisomerase II, medium subunit Length = 442 Score = 112 bits (280), Expect = 7e-24 Identities = 86/290 (29%), Positives = 133/290 (45%), Gaps = 1/290 (0%) Frame = -2 Query: 111277 LDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHG 111098 L YAM + RA+P+ DG KPV R V+ +L + K A + G V + HG Sbjct: 17 LAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGGVADLGYHHG 76 Query: 111097 DTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLDKE 110918 + + D MA ++ + L+DGQGNFGS AAA RY R++K + + D Sbjct: 77 ENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFYNVYKD---- 132 Query: 110917 TVDWVPNYDGTEQI-PAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLTEVIDGCLALIDD 110741 ++ P + E I PA IP +L+NG SGIA G AT I PH+++ V L + Sbjct: 133 -TEYAPVHQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSVKKAVLQALQG 191 Query: 110740 PELTIDQLMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRARAEIEDIDKVGGRQQI 110561 ++T P +FP R ++E I + EI K R Q+ Sbjct: 192 KKVT-------KPKVEFP-----EFRGEVVE----------IDGQYEIRGTYKFTSRTQM 229 Query: 110560 VVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVVIELRR 110411 +TE+PY+ ++ + KI + ++ K G D + G ++ R+ Sbjct: 230 HITEIPYKYDRETYVSKILDPLENK---GFITWDDACGEHGFGFKVKFRK 276 >ref|NP_046572.1|ABC transporter Length = 705 Score = 110 bits (275), Expect = 3e-23 Identities = 108/479 (22%), Positives = 216/479 (45%), Gaps = 10/479 (2%) Frame = -3 Query: 60258 EWTRSRIMVRISSRLDALLGRDVYRASFKRALDSGGMDASAQPL---NDLTGLRQFLTGA 60088 ++ RS +++++S ++D + + K ++ + + ND ++ F + Sbjct: 223 DFVRSYLIIKLSYKVDKEMSNVYFNKVTKLPINFFENREDGEVISRFNDGIYIKDFFSAN 282 Query: 60087 GLFAFFDAPWLPVYIGVMFFFHPWYGWIAIASAIVLL-CLAALNEKLTGKALAEANKQNI 59911 + A D L + +GV+ + ++ I I+LL CLA L K + + Sbjct: 283 FVTAIIDII-LILGLGVILYRTNNILFLTIILPILLLSCLAILFFDHLKKKNQKLMEDKA 341 Query: 59910 AANLYTTKNLRNAEVIQSMGMLHSLIARWSVRQNKVLHLQSVASDKSGFITSLSKTFRML 59731 + L+N + S+ + ++ + +K L S S I++ + + L Sbjct: 342 KSTSLLINFLKNMTTVYSLNKTSFFLEKFHLTYDK--QLNSTFSVAKAVISN--EILKGL 397 Query: 59730 VQS----LILGVGAYLAVKQEINPGLMIAGSLLLGRALAPIDMMIGGWKGFITARSQYAR 59563 +Q+ +IL VG + ++ G ++ + L L+ +D ++ A R Sbjct: 398 IQNSFTIIILWVGTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHVASIR 457 Query: 59562 LNEILDRQKSEQERMSLPAPE--GRVQVENLVVGAPGSKTPILKNISFTVPAGSVVGIIG 59389 ++++ + +L + ++ NL +GA + I+++I+ + V IIG Sbjct: 458 FFDVVNYPVQQDSNENLTELDFIQNIKTVNLNIGADPMRY-IVEDINLILDRKDKVLIIG 516 Query: 59388 PSASGKSTLARALLGVWAPQHGVVRLDGADINNWDKRELGPHIGYLPQDIELFEGSISEN 59209 S +GKST A++L ++ + L+G DIN +D + I Y+ ++ LF+G+I EN Sbjct: 517 ESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKEN 576 Query: 59208 IARFGEIEPDKVIQAARMAGVHEMILQLPDGYDTVIGSEGISLSGGQRQRVGLARALYGN 59029 + + +++ A M+ HE I L Y + G +LS GQ+QR+ LARA+ Sbjct: 577 LCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQ 636 Query: 59028 PRLLVLDEPNSNLDDVGERALASAIRQIKATDATIFIITHRTNILAQLDSLLVMHNGTL 58852 P++L+LDE SN+D + + + ++ D I +ITH + + LV N + Sbjct: 637 PQVLILDESLSNIDPDNTKLIYETLHRM---DCLIILITHNDPSNFKYNKKLVFRNNRI 692 >ref|NP_039614.1|gene IV product Length = 428 Score = 109 bits (273), Expect = 5e-23 Identities = 77/277 (27%), Positives = 140/277 (50%), Gaps = 10/277 (3%) Frame = +2 Query: 76913 GSVVVDANRNAIIYKGSGQEWLKLRPLLEELDRPVPSVIIDVLLAEVNLNDREGLGVDWQ 77092 G+VV N+++ GS Q L + +D V+I L+ E ++++ G+ + + Sbjct: 162 GNVVDYPGNNSLVVSGSAQVMPALSDFITSIDVAREQVLIQSLMFETSVSN--GVDLSFA 219 Query: 77093 NITGSLGSKQLIFGTANGIGSSGLNISALNSAGQT---------KATLNAFYDNNQAVIR 77245 S G A G +S L +AL++AG + +L A ++ + + Sbjct: 220 LALASGGK------VAGGFNTSALG-TALSTAGGSFGIFNGNILALSLQAVQSDSNSKVI 272 Query: 77246 SSPKLMVRSGEEATIEVGNEIPVVTG-TTQSTDTDNAPITQTVQYRKTGVLLNIKPTVQA 77422 S+P+++ +SG+ I VG +P VTG T + N P QT++ R GV L + P V Sbjct: 273 STPRILTQSGQSGYISVGQNVPFVTGKVTGEAASVNNPF-QTIERRDVGVSLKVTPVVMG 331 Query: 77423 SGVVDLKISQELSESTDTGTGDTLTPIINNRRVETALTLRDGGSVMLAGLISSSKGKGDN 77602 +G + L I + ++ + I N R+++T + ++DG +++L GLISS++ D Sbjct: 332 NGQLVLTIDTKADSLSNQAIASDI--ITNQRQIQTTVQIKDGQTLLLGGLISSNQFDSDR 389 Query: 77603 GVPLLGDLPWIGNLFKSQSNSETRTELIVMIIPYVVR 77713 VP + +P IG LF+S S+S+ + V++ +V+R Sbjct: 390 SVPFMSKIPLIGWLFRSHSDSKDDRTMFVLLTAHVIR 426 >ref|NP_510894.1|phage assembly protein Length = 426 Score = 105 bits (263), Expect = 7e-22 Identities = 81/287 (28%), Positives = 142/287 (49%), Gaps = 13/287 (4%) Frame = +2 Query: 76892 IAGNPEQGSVVVDANRNAIIYKGSGQEWLKLRP-LLEELDRPVPSVIIDVLLAEVNLNDR 77068 + N + S V+ + + ++ + ++ L P L +D P ++I+ L+ EV + Sbjct: 153 VKSNTSKSSNVLSIDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEV----Q 208 Query: 77069 EGLGVDWQNITGSLGSKQLIFGTANGIGSSGLNISALNSAGQTKATLN---------AFY 77221 +G +D+ GS A G+ + L S L+SAG + N A Sbjct: 209 QGDALDFSFAAGSQRGT-----VAGGVNTDRLT-SVLSSAGGSFGIFNGDVLGLSVRALK 262 Query: 77222 DNNQAVIRSSPKLMVRSGEEATIEVGNEIPVVTG--TTQSTDTDNAPITQTVQYRKTGVL 77395 N+ + I S P+++ SG++ +I VG +P +TG T +S + +N QT++ + G+ Sbjct: 263 TNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNP--FQTIERQNVGIS 320 Query: 77396 LNIKPTVQASGVVDLKISQEL-SESTDTGTGDTLTPIINNRRVETALTLRDGGSVMLAGL 77572 +++ P A G + L I+ + S S+ T D +T N R + T + LRDG +++L GL Sbjct: 321 MSVFPVAMAGGNIVLDITSKADSLSSSTQASDVIT---NQRSIATTVNLRDGQTLLLGGL 377 Query: 77573 ISSSKGKGDNGVPLLGDLPWIGNLFKSQSNSETRTELIVMIIPYVVR 77713 D+GVP L +P IG LF S+S+S + L V++ +VR Sbjct: 378 TDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVR 424 >ref|NP_040579.1|G IV protein Length = 437 Score = 105 bits (262), Expect = 9e-22 Identities = 80/279 (28%), Positives = 135/279 (48%), Gaps = 12/279 (4%) Frame = +2 Query: 76913 GSVVVDANRNAIIYKGSGQEWLKLRPLLEELDRPVPSVIIDVLLAEVNLNDREGLGVDWQ 77092 G V+ N+++ GS L + +D V+I L+ E +L + GVD Sbjct: 171 GDVIDYPGNNSLLVSGSAAIMNALADFITSIDVARDQVLIQSLMFETSLVN----GVDLS 226 Query: 77093 NITGSLGSKQLIFGTANGIGSSGLNISALNSAGQTKATLNAFY----------DNNQAVI 77242 GS ++ A G +S L +AL++AG + N D+N VI Sbjct: 227 FAAGSASGDKV----AGGFNTSALG-TALSTAGGSFGIFNGNVLALSIQAVKNDSNSKVI 281 Query: 77243 RSSPKLMVRSGEEATIEVGNEIPVVTG--TTQSTDTDNAPITQTVQYRKTGVLLNIKPTV 77416 S+P+++ +SG+ I VG +P VTG T ++ + +N QT++ R GV L + P V Sbjct: 282 -STPRILTQSGQTGYISVGQNVPFVTGKVTGEAANVNNP--FQTIERRDVGVSLKVTPVV 338 Query: 77417 QASGVVDLKISQELSESTDTGTGDTLTPIINNRRVETALTLRDGGSVMLAGLISSSKGKG 77596 +G + L I + T T + I N R ++T + ++DG +++L GLI S+ G Sbjct: 339 MGNGQLVLTIDTKADSLTSQMTASDI--ITNQRHMQTTVQIKDGQTLLLGGLIDSNTTDG 396 Query: 77597 DNGVPLLGDLPWIGNLFKSQSNSETRTELIVMIIPYVVR 77713 + VP +P IG LF+S S+S + V++ +V++ Sbjct: 397 NRSVPWFESVPVIGWLFRSHSDSHNERTMFVLLTAHVIK 435 >ref|NP_891840.1|topoisomerase medium subunit Length = 454 Score = 101 bits (252), Expect = 1e-20 Identities = 86/304 (28%), Positives = 140/304 (46%), Gaps = 5/304 (1%) Frame = -2 Query: 111307 NIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVVG 111128 ++E + +YA+ R +P DGLKPV R V+ + K ++K A + Sbjct: 15 SLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKFRKMADIGS 74 Query: 111127 DVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLA 110948 V + HG+T + MA +S L+DGQGNFGS A A RY R+ Sbjct: 75 GVAELGYHHGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYIFARV---- 130 Query: 110947 HELLADLDKETVDWVPNYDGTEQI-PAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLTEV 110771 HE + K+ ++ P ++ E I PA +P +L NG SGIA G T+I PH+L Sbjct: 131 HENFFKIYKD-MNCAPKHEDLEHIPPAFYLPVVPMVLANGISGIATGYKTDILPHSLE-- 187 Query: 110770 IDGCLALIDDPELTIDQLMQYIPGPDFP--TAGII--NGRAGIIEAYRTGRGRIYIRARA 110603 +LI+ EL + + P FP T +I + R G+I Sbjct: 188 -----SLIECTELALAGKLDKEPSVQFPKFTGKVIPRDDRDGVI---------------- 226 Query: 110602 EIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVVI 110423 +E ++ G+ ++ ++E+PY+ ++ + + + ++EK + I D KDG R + Sbjct: 227 -LEGTYELNGKTKLTISEVPYKFDREEYV-AVLDALEEKDL--IVSYNDRCSKDGFRFEV 282 Query: 110422 ELRR 110411 L+R Sbjct: 283 TLKR 286 >ref|NP_944225.1|gp52 topoisomerase II medium subunit Length = 438 Score = 94.0 bits (232), Expect = 3e-18 Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 10/296 (3%) Frame = -2 Query: 111322 EILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKS 111143 +++ I + ++AM I RALP DGLKPV R +LF++ + + + +KK+ Sbjct: 2 QVIKRGISSLVNNEAKEFAMYTIEERALPSMVDGLKPVQRYILFSVLK---NAGREFKKN 58 Query: 111142 ARVVGDVIGKY-HPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 110966 A V G VI +Y + HG+ A D MA ++ + ++ G+GNFG AA RY Sbjct: 59 AAVAG-VISEYGYNHGEMAAMDAACLMASTWNNNFPVIQGRGNFGCRAVQEGAAARYIFC 117 Query: 110965 RMAKLAHELLAD---LDKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 110795 + + D L++ T D +P +P +L+NG SGIA G AT I Sbjct: 118 SKHERFESMFKDMELLEESTAD-------GSILPRYYLPILPTVLLNGVSGIATGFATKI 170 Query: 110794 PPHNLTEVIDGCLALI------DDPELTIDQLMQYIPGPDFPTAGIINGRAGIIEAYRTG 110633 PH++ V C+ + D+PE+ + G I G ++++ Sbjct: 171 MPHSVQSVAK-CVEQVLKSGKCDEPEIQFPKFF-----------GKILSIEGETQSWK-- 216 Query: 110632 RGRIYIRARAEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITE 110465 +E ++ G+ ++++ ELP + ++ + + + +LV+ KI G E Sbjct: 217 -----------VEGDYELSGKTKLIINELPPKYDRLKYVTHLNKLVETDKIVGYDE 261 >ref|NP_047359.1|maturation protein Length = 429 Score = 92.4 bits (228), Expect = 8e-18 Identities = 65/266 (24%), Positives = 124/266 (46%), Gaps = 11/266 (4%) Frame = +2 Query: 76946 IIYKGSGQEWLKLRPLLEELDRPVPSVIIDVLLAEVNLNDREGLGVDWQNITGSLGSKQL 77125 ++ S + +L +D P V+++ ++ E +D G D+ G + Sbjct: 174 LLVTASASQHKELAAFFPSVDVPRTQVLVESVIFETTASD----GFDFSFAAGDPSGSPV 229 Query: 77126 IFGTANGIGSSGLNISALNSAGQTKATLN---------AFYDNNQAVIRSSPKLMVRSGE 77278 A GI + L S L+S G + N A ++++ + S P+++ SG+ Sbjct: 230 ----AGGINTDRLT-SVLSSTGGSFGIFNGNILGLSLKALETSSKSTLLSMPRILTMSGQ 284 Query: 77279 EATIEVGNEIPVVTG--TTQSTDTDNAPITQTVQYRKTGVLLNIKPTVQASGVVDLKISQ 77452 T G +P VTG T ++ + +N QT++ G+ L + P V G++ + +S Sbjct: 285 PGTFTAGQNVPFVTGRVTGEAANVNNP--FQTIERHDVGISLKVVPVVTPGGLLIMDVST 342 Query: 77453 ELSESTDTGTGDTLTPIINNRRVETALTLRDGGSVMLAGLISSSKGKGDNGVPLLGDLPW 77632 +D+ T + I N R + T + L+ G +V+L G++ + + D+ VP + +P Sbjct: 343 NADSISDSQTASDI--ITNTRSISTTVQLKSGQTVLLGGMVDNRESDSDSSVPWVSKIPL 400 Query: 77633 IGNLFKSQSNSETRTELIVMIIPYVV 77710 IG LF S+S++ + L ++I VV Sbjct: 401 IGALFTSKSSNANKRTLYILIRARVV 426 >ref|NP_932596.1|topoisomerase II medium subunit Length = 555 Score = 92.4 bits (228), Expect = 8e-18 Identities = 85/329 (25%), Positives = 149/329 (45%), Gaps = 4/329 (1%) Frame = -2 Query: 111307 NIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVVG 111128 +++ + L++AM + RA+P DGLKPV R ++ E + K A + G Sbjct: 114 SLQSIINHEALEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQNRSKFNKVAALAG 173 Query: 111127 DVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLA 110948 V + HG+ + +A ++ +++G GNFGS AAA RY R+ Sbjct: 174 GVSEAGYHHGEGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAAPRYVFCRV---- 229 Query: 110947 HELLADLDKETVDWVPNYDGTEQIPA--VMPTRIPNLLVNGSSGIAVGMATNIPPHNLTE 110774 H+ D+ ++ ++ P + E +P +P IP +L NG GIA G ATNI PH+ Sbjct: 230 HQNFWDIYRD-IELAPVHPEPEHLPPRYYLPV-IPMVLANGVKGIATGYATNIFPHSYKS 287 Query: 110773 VIDGCLALIDDPELTIDQLMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRARAEIE 110594 +I A I+ + + P+F +G+I R E+E Sbjct: 288 LIKCTKAAIEGKPIP----RLEVQFPEF--SGVI---------------RRVSAKTIEVE 326 Query: 110593 DIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVVIELR 110414 + ++ G+ ++ +TELP + ++ + + +L + KI E K+G R + L+ Sbjct: 327 GLYELSGQTKLTITELPVKFDRLSYVILLDKLKDQGKIVSY----KEQHKNGFRFDVTLK 382 Query: 110413 R-GEVPEVVLNNLYA-QTQLQSVFGINVV 110333 R + E + NN A ++ +FG+ V Sbjct: 383 RQDKFGEQLQNNPEATHEKIIKMFGLRQV 411 >ref|NP_899529.1|topoisomerase II small subunit Length = 428 Score = 88.6 bits (218), Expect = 1e-16 Identities = 89/317 (28%), Positives = 144/317 (45%), Gaps = 3/317 (0%) Frame = -2 Query: 111277 LDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHG 111098 L+YAM I RAL + DGLKPV R VL+ + + D + + K A + V + HG Sbjct: 14 LEYAMYTIENRALANGIDGLKPVQRFVLYNVIK---DASTSFDKVAALGSSVSKIGYNHG 70 Query: 111097 DTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLDKE 110918 +T+ D + MA + +V G+GNFGS +A+ RY AKL DL + Sbjct: 71 ETSAQDALALMAAEWQNNVPIVQGRGNFGSRMVKESASARYV---YAKLHDNF--DLYFK 125 Query: 110917 TVDWVPNYDGTEQIPA--VMPTRIPNLLVNGSSGIAVGMATNIPPHNLTEVIDGCLALID 110744 + P + E +P +P +P +L+NG GIA G A NI PH Sbjct: 126 DIHLSPEHKDLEHVPPQFYVPV-LPMILMNGVQGIATGFACNILPH-------------- 170 Query: 110743 DPELTIDQLMQYIPGPDFPTAGI-INGRAGIIEAYRTGRGRIYIRARAEIEDIDKVGGRQ 110567 DPE +++Y+ G + + G IE ++ A+I ++ G Sbjct: 171 DPEWVKKAVLEYLAGKEISEPVVKFPEFYGKIE-------KLEHNKYAQIGTVEISG--L 221 Query: 110566 QIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVVIELRRGEVPEVVL 110387 VVTE+P + A+ I ++ +LV++ KI + E+ + + +RG ++ Sbjct: 222 TAVVTEIPTGFDHAKYIIELDKLVEKGKISSYVDETSET----FQFRVRFKRG--AKMTE 275 Query: 110386 NNLYAQTQLQSVFGINV 110336 ++ +LQS F N+ Sbjct: 276 ESVIKTLKLQSTFTQNI 292 >ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family Length = 92 Score = 73.6 bits (179), Expect = 4e-12 Identities = 35/90 (38%), Positives = 59/90 (65%) Frame = -3 Query: 100086 MTKSELIERIVTQQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 99907 M K+ELI ++ +QG +S K+ +++ + + +S+AL +G+++ I GFG+F + RA R Sbjct: 1 MNKTELIAKVAEKQG-VSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARK 59 Query: 99906 GRNPKTGQTVRLDGKFVPHFKPGKELRDRV 99817 GRNP+TG+ + + P FKP K L+D V Sbjct: 60 GRNPQTGEEIDIPATKAPAFKPAKALKDAV 89 >ref|YP_024677.1|gp04 Length = 90 Score = 71.6 bits (174), Expect = 1e-11 Identities = 35/90 (38%), Positives = 55/90 (61%) Frame = -3 Query: 100086 MTKSELIERIVTQQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 99907 M KS+LI + + G ++ D A++ +LE ++++L GD + + GFG FS+ RA R Sbjct: 1 MNKSDLINHVAAETG-MTKTDSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAART 59 Query: 99906 GRNPKTGQTVRLDGKFVPHFKPGKELRDRV 99817 GRNP TG+ +++ P FK GK L+D V Sbjct: 60 GRNPATGEEIKIPASKAPKFKAGKGLKDAV 89 >ref|YP_025041.1|putative transposase B Length = 280 Score = 61.6 bits (148), Expect = 1e-08 Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 4/85 (4%) Frame = -3 Query: 33276 QYCSAAYQKLIRAHQLRCSMSAKGNCYDNACAESFFHSLKVECIHG----ERFDTRARMR 33109 QY S Y + + +R S S KG YDNA ESF SLK EC++ E ++T A Sbjct: 185 QYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAA--- 241 Query: 33108 ATVFEYIEVDYNRQRRHSTQGYISP 33034 A +FEY+ YNR+R HS+ GY +P Sbjct: 242 AVLFEYVHAFYNRKRIHSSLGYQTP 266 >ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase Length = 320 Score = 56.2 bits (134), Expect = 6e-07 Identities = 70/255 (27%), Positives = 112/255 (43%), Gaps = 8/255 (3%) Frame = -2 Query: 96547 ILVTGSAGFIGANFVLDWLHQHDEAVVSLDKLTYAGNLANLKSLEGDDRHVFVKGDIGDS 96368 IL+TG GFIG+ + +D+ V +K ++ N+ ++ +VFV D+ D Sbjct: 2 ILITGCTGFIGSQLLKRL--NNDKVVCVANKDHFSNNI-----VDSAAEYVFV--DLTDR 52 Query: 96367 KLVAGLLAEYQPRAVVNFAAESHVDRSIHGPEDFIQTNIVGTFRLLEAVRVYHAQLHDGA 96188 + V LL + +P V+N A+++ V S ED T + A+ Y+ + Sbjct: 53 EKVRDLLRKVKPDLVINLASKTPVRLSY---ED--------TSFMNNAIIAYNIAM---- 97 Query: 96187 AAFRFLHVSTDEVYGSLEPTDPAFTERNRYE-PNSPYSASKAASDHLV--RAYHHTYKLP 96017 A +H ST EVY P + E Y P SPY+ SK AS+ L+ R P Sbjct: 98 AEAPLIHASTAEVY-PYTPYPHYYKEEEVYRTPTSPYAVSKIASEMLLAGRKEKTIILRP 156 Query: 96016 VLTTNCSNNYGPY----HFPEKLIPLIIHNALSGKPLPIYGDGQQVRDWLYVKDHCSA-V 95852 + T + P +F EK + ++ A K + G R W+Y +DH +A + Sbjct: 157 INTIGRPISRLPEEARGYFFEKTVLAMLSGA---KEIHYDGHPLSSRQWMYWEDHVNAYL 213 Query: 95851 RRVLEAGKLGETYNV 95807 + K+ YNV Sbjct: 214 HAIKNLDKMEGVYNV 228 >ref|NP_945089.1|gp58 Length = 297 Score = 55.8 bits (133), Expect = 8e-07 Identities = 64/306 (20%), Positives = 120/306 (39%), Gaps = 18/306 (5%) Frame = -2 Query: 8995 QAMQLFARIVELGSFSKAAEQQGMSRASATALIKQLESRLGVRLLQRTTRQVSVTLDGRS 8816 Q + F G+F++AAE+ +++ + + + +LE+ LG L R + + +T G+ Sbjct: 10 QCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQ 69 Query: 8815 YYQHCRSVLGE-IEEVESVLSQNARHPRGRLKVDLPASLGRLVVIPALPDFQARYPEIVL 8639 Y ++L + +E V+ + H L + + L + + +F A +PE+ + Sbjct: 70 YADRVHAILADCVEATALVMKEQTPH---SLTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 8638 EIGIGDRMIDLVREGVDCVVRI------GGLSDSTLIARSLPALPQVTCASAGYLARHGL 8477 I + + + +L D V G++ + ++A + A CA R Sbjct: 127 RILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAY----CAPTFLAGRRVP 182 Query: 8476 PTSLDEL----------QGHRCIDYLSATTGRLAPLEFAVDGRIETRSLPASLAVN-HGE 8330 P L E Q D+ T G + F I S P L + HG Sbjct: 183 PQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIG---FRPARTISANSYPVLLQLALHGH 239 Query: 8329 AYVAACEAGLGIVQVPRYHVERQLAAGSLVELLPQHPPPALPMTVLYPHHRHLTPRLRVF 8150 G + ++ + + +G LV H V++P R TP + +F Sbjct: 240 ----------GAILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMF 289 Query: 8149 IDWLVT 8132 +WL+T Sbjct: 290 REWLLT 295 >ref|NP_795486.1|hypothetical protein Length = 374 Score = 52.8 bits (125), Expect = 7e-06 Identities = 32/95 (33%), Positives = 45/95 (47%) Frame = -3 Query: 6888 DPLLRAGIAHFWFVTLHPFDDGNGRLTRAITDLALAQGERQAIRLHAMSASILDDRQGYY 6709 D LLR +AH F +HPF DGNGRL R + L Q + +S + +R YY Sbjct: 195 DILLRIAVAHAQFELIHPFLDGNGRLGRILIALMSVQEGLLKHPIFFVSEELEKERIRYY 254 Query: 6708 RILEANQKGGPEITPWLEWFLHTLLRSLQQALARI 6604 L A + P+ WL FL+ + + L +I Sbjct: 255 NALNATRGENPDWNLWLNLFLNASEQMAKNILKKI 289 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 51.2 bits (121), Expect = 2e-05 Identities = 29/86 (33%), Positives = 46/86 (53%) Frame = -3 Query: 33273 YCSAAYQKLIRAHQLRCSMSAKGNCYDNACAESFFHSLKVECIHGERFDTRARMRATVFE 33094 Y S +++L+ +Q+R SMS +GNC+DN+ E FF SLK E + + + + + + Sbjct: 209 YTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITD 268 Query: 33093 YIEVDYNRQRRHSTQGYISPEFFELR 33016 YI Y+ R H G + P E R Sbjct: 269 YIVGYYSALRPHEYNGGLPPNESENR 294 >ref|NP_112719.1|ORF56 Length = 418 Score = 48.5 bits (114), Expect = 1e-04 Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 2/139 (1%) Frame = -3 Query: 7023 EPMQVVSGRLDRLTVHFEAPPRDGLERQLAAFLDWFEASRRDGGLDPLLRAGIAHFWFVT 6844 EP+ +V+ + VH A +D ++ +L D + RD + +A I+HF+F Sbjct: 185 EPVFIVNQNSGK-KVHQGATGQDTIKNRLE---DLVKFMNRDD-IPTYEKAFISHFYFEN 239 Query: 6843 LHPFDDGNGRLTRAITDLALAQGERQAIRLHAMSASILDDRQGYYRILE--ANQKGGPEI 6670 HPF DGNGR R I LA+ + + +S +IL++R YY+ E ++ K EI Sbjct: 240 THPFYDGNGRTGRFILCSYLAR-KLDYLSAVGVSVAILENRSKYYKAFEEGSHPKNVGEI 298 Query: 6669 TPWLEWFLHTLLRSLQQAL 6613 T ++ +L++ Q+ L Sbjct: 299 TSFIFDMFGIVLKAQQKVL 317 >ref|NP_818317.1|gp16 Length = 461 Score = 46.6 bits (109), Expect = 5e-04 Identities = 73/324 (22%), Positives = 113/324 (34%), Gaps = 14/324 (4%) Frame = -3 Query: 88779 ALAEIDDPKIRVLHLESNKGI--SGATNVGLAAAQGEFIVFMDHDDELTVDCLYELALCI 88606 ALA D ++ ++ L NK + NV + AQG ++VF+D DD + D L L I Sbjct: 57 ALAPEDQARVEIILLTDNKQLMLGDKRNVMVDIAQGRYVVFIDDDDRIEPDYLSTLLNAI 116 Query: 88605 NRDQ-PDFIYSDEDKLTEEGEYTQPHFKPDWSPDTMMSTMF---TCHVSCVRRSLLSKVG 88438 + D + G + W D + H+ C+RR L V Sbjct: 117 DTSPGVDVVTFHASVSLNGGPPKICRYSTGWVEDHNTEDEYHRLPNHICCIRRDLARSVS 176 Query: 88437 ELRSEFDGCQDWDFILRVVEHTNRISHIPKVLYHWRIIPASVASDISAKPYVLEASRRVR 88258 + IL + T R + +VLYH+ D SA EA R Sbjct: 177 YPSVRHHEDSGYSKILAPLLKTERA--LNRVLYHY---------DYSAA--TTEAQTR-E 222 Query: 88257 LDALERRGLKGSIEPVAQVPGYFRVNYHLQGSPLISIIIPSRDNGSVLR----RCLDSIQ 88090 + RR L PL+ I+ S LR +D+ Sbjct: 223 ATVIRRREL----------------------PPLVDIVFLSNAKTDELREMTQHAVDTCL 260 Query: 88089 EKSSYRNFEIIILDNGSVEASTVAYLKELQEKGV----AQIIRHDAPFNFSELNNIGART 87922 ++ II+++ Q+ G+ AQ + PF ++ N+G T Sbjct: 261 AGANALPVNIIVVE---------------QQPGIGYDNAQTMYQTGPFRYNAFANLGVAT 305 Query: 87921 AGGELLLFLNDDTEVLCNDWLERM 87850 E + N+D V N WL + Sbjct: 306 GSAEWVAIANNDL-VFSNGWLHAL 328 >ref|NP_817446.1|gp108 Length = 391 Score = 44.7 bits (104), Expect = 0.002 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 3/174 (1%) Frame = -3 Query: 88776 LAEIDDP-KIRVLHLESNKGISGAT--NVGLAAAQGEFIVFMDHDDELTVDCLYELALCI 88606 +A++DDP ++ VL L + +S T N + A G + +F+D DDE+ + + L Sbjct: 36 IAKLDDPSRVEVLILTDTRSMSIGTKRNHLVRMASGRYTIFVDDDDEVADNYVSALLDAT 95 Query: 88605 NRDQPDFIYSDEDKLTEEGEYTQPHFKPDWSPDTMMSTMFTCHVSCVRRSLLSKVGELRS 88426 N + E +L +T ++ D H S VRR + + + S Sbjct: 96 NSGADVLTFPLEYRLNGVKRWTVKQ-SIHYTDDHRRKLNTPRHTSAVRRDIALALPFVES 154 Query: 88425 EFDGCQDWDFILRVVEHTNRISHIPKVLYHWRIIPASVASDISAKPYVLEASRR 88264 + DW LR V T+ + I LY + +PA+ + AK + A R+ Sbjct: 155 SYGEDADWAQRLRTVAKTDHV--INDTLYFYCDVPATSVARQYAKEHSPNAYRQ 206 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 44.3 bits (103), Expect = 0.002 Identities = 26/81 (32%), Positives = 39/81 (48%) Frame = -3 Query: 33276 QYCSAAYQKLIRAHQLRCSMSAKGNCYDNACAESFFHSLKVECIHGERFDTRARMRATVF 33097 QY S AY + ++ L S + G+ YDNA AES K E IH + + RA + Sbjct: 199 QYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATL 258 Query: 33096 EYIEVDYNRQRRHSTQGYISP 33034 +++ YN +R G+ P Sbjct: 259 TWVDW-YNNRRLLGRLGHTPP 278 >ref|NP_958259.1|hypothetical protein Length = 166 Score = 43.1 bits (100), Expect = 0.006 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Frame = +3 Query: 45225 RRPGRRDHPEHRRRPAPDRTHPAPPAQRRRQQLPGHQGRHAPR-----HGHPLPDPAFHA 45389 R+P RR HP RR DR H A+RRR+ P + H PR G PL A Sbjct: 17 RQPARRAHPAPRRHVDDDRRHDRRAARRRRRPRPPPEPSHPPRPRPTEEGTPLMSTIVRA 76 Query: 45390 DQPGRP 45407 +P P Sbjct: 77 TEPTAP 82 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 42.4 bits (98), Expect = 0.009 Identities = 69/246 (28%), Positives = 83/246 (33%), Gaps = 31/246 (12%) Frame = +1 Query: 69232 HLRSGRYRTKASRGAHDEIRLRRLRCPGRTADR------PAGGRRQARSLAPVAGQEHRP 69393 H R+ RT+A AH +R R G DR P R+A S P AG P Sbjct: 15 HTRTPAPRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRAPS-RPAAGPRRHP 73 Query: 69394 GRTRSIGRQAQARPFRPSPEPTAHH--PGIARTHPPXXXXXXXXXXXXXXGRCRPPREDR 69567 R+ R +A P P P H PG A P R R P DR Sbjct: 74 PVARTRPR-TRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPAL-------RPRAPECDR 125 Query: 69568 PCLH--RHRPRPATWRILLGGTGXXXXXXXXXXXXXGQGRRTHRR----PGRSPQARPG- 69726 H PR T + LG RRT RR P R Q R G Sbjct: 126 GAHHLRTRAPRTRTRAVPLGPGARVRTPVEDR-------RRTRRRRRPDPRRRVQPRLGV 178 Query: 69727 ----KNGIRRAHRQ------------RTAQRPDLPGHSGGFRSRRRAAHVHRGRPQVQRH 69858 + G RR R+ R +R P H R RRR HR R ++ Sbjct: 179 GVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRRHRRRASLRPR 238 Query: 69859 ARQERN 69876 R+ R+ Sbjct: 239 HRRHRS 244 Score = 39.7 bits (91), Expect = 0.061 Identities = 59/242 (24%), Positives = 68/242 (28%), Gaps = 11/242 (4%) Frame = +3 Query: 74301 RPRPASGNATTTSPAGCRSSCAIPVPTHATTSSAWMPPACSAACRCSPKRATTWSRSRPS 74480 RP P G A SP P P H CR +P R R P Sbjct: 36 RPHPHLGPARDRSPDH-------PEPDHP--------------CRRAPSRPAAGPRRHPP 74 Query: 74481 LCRTGPSANEGMVATGMGEKSRATGRQPAPAPRADGHPADRPALPESAARRQPSRIAC-- 74654 + RT P A G PA P A G PA PE A +P C Sbjct: 75 VARTRPRTRAPECAPDPG---------PAVHPAAPGCAPAAPAAPEYAPALRPRAPECDR 125 Query: 74655 ----RHRRSPRRTARCXXXXXXXXXXXXXXXXXXAARKPAQGPVXXXXXXXXXXXXHPGE 74822 R+PR R R+ P Sbjct: 126 GAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRG 185 Query: 74823 CQGPARTPAPGADPHRGLHRRQGRSRQPPDPPATAP----GRQRPGRTALQP-DRRHGGG 74987 + R A P G RR R P P A P GR+ R +L+P RRH Sbjct: 186 ARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRRHRRRASLRPRHRRHRST 245 Query: 74988 QP 74993 P Sbjct: 246 PP 247 Score = 38.1 bits (87), Expect = 0.18 Identities = 38/130 (29%), Positives = 47/130 (36%), Gaps = 8/130 (6%) Frame = +3 Query: 68352 PRARHECRKLPNRPPAPGDCSPARRPALLRSGS*GSGDHRETDRIRRSPCAPDRRACRHP 68531 P H CR+ P+RP A P R P + R+ R R CAPD HP Sbjct: 52 PEPDHPCRRAPSRPAA----GPRRHPPVART----------RPRTRAPECAPDPGPAVHP 97 Query: 68532 ERGPDSAP--------VPGHRRCSPADPRSANRSGPWPIRAPCRPLPTALHCCRATSPAV 68687 P AP P R +P R A+ R R +P R +P Sbjct: 98 -AAPGCAPAAPAAPEYAPALRPRAPECDRGAHHLRTRAPRTRTRAVPLG-PGARVRTPVE 155 Query: 68688 TEDRT*RRRQ 68717 RT RRR+ Sbjct: 156 DRRRTRRRRR 165 Score = 37.4 bits (85), Expect = 0.30 Identities = 38/92 (41%), Positives = 40/92 (43%), Gaps = 5/92 (5%) Frame = +3 Query: 45237 RRDHPEHRRRPAPDRTHPAPPAQRRRQQLP-GHQGRHAPRH-GHPLPD-PAFHADQPGRP 45407 RR P H R PAP RT P A RR + P H G R HP PD P A P RP Sbjct: 9 RRARPPHTRTPAP-RTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRA--PSRP 65 Query: 45408 AVGLFRAVRVHPGVQAV--DWRATQDLPGRGP 45497 A G R HP V RA + P GP Sbjct: 66 AAG----PRRHPPVARTRPRTRAPECAPDPGP 93 >ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase Length = 327 Score = 40.8 bits (94), Expect = 0.027 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 3/102 (2%) Frame = -3 Query: 88914 SIVVPAYNTSSELLDAVLSSVRAQWYPH--WELILVDDASPSEETRRALAEIDDPKIRVL 88741 S+++P +N + E L +SSV Q +ELI++DD S + + +R Sbjct: 5 SVIMPTFN-NGEKLHRTISSVLNQTMKSTDYELIIIDDHSNDNGETLNVIKKYKGLVRFK 63 Query: 88740 HLESNKG-ISGATNVGLAAAQGEFIVFMDHDDELTVDCLYEL 88618 L+ N G S N GL ++ E++ F+D DD L L +L Sbjct: 64 QLKKNSGNASVPRNTGLKMSKAEYVFFLDSDDLLHERALEDL 105 >ref|NP_818074.1|gp109 Length = 394 Score = 40.8 bits (94), Expect = 0.027 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 11/173 (6%) Frame = -3 Query: 88776 LAEIDDP-KIRVLHLESNKGISGAT--NVGLAAAQGEFIVFMDHDDELTVDCLYELALCI 88606 +A++DDP ++ VL L + +S T N + A G + VF+D DDE+ + + L Sbjct: 40 IAKLDDPTRVEVLVLTDTRSMSIGTKRNHLVRMASGRYTVFVDDDDEVADNYVSALLKAA 99 Query: 88605 NRDQPDFIYSDEDKLTEEGEYTQPHFKP-------DWSPDTMMSTMFTCHVSCVRRSLLS 88447 S D LT + EY K ++ D + H S VRR + Sbjct: 100 E--------SGADVLTFQLEYRLNGIKRWITRQSIRYTDDHVNKLNTPRHTSAVRRDIAL 151 Query: 88446 KVGELRSEFDGCQDWDFILRVVEHTNRISHIPKVLYHWRIIPA-SVASDISAK 88291 + + S + DW L V T R+ I + LY + +PA SVA +A+ Sbjct: 152 ALPFVESSYGEDADWAKRLLSVAKTERV--INEALYIYCDVPATSVARQYAAE 202 >ref|YP_195136.1|contractile sheath protein gp18 Length = 743 Score = 37.4 bits (85), Expect = 0.30 Identities = 65/259 (25%), Positives = 91/259 (35%), Gaps = 16/259 (6%) Frame = +2 Query: 76580 LIVFAADPAILATARQWVELLDRQSQEQVENGLFLYQVRNTQAAGIASMLGALGYSATIP 76759 ++ FAA P A Q LL S V + Y A AS Y P Sbjct: 142 IVTFAATPTDTAVGTQ---LLFSYSGTLVTGEILSYDSATNTATITASGTLTSQYLLDTP 198 Query: 76760 DTGLN---TSNTVTPTGASTGESLATSGPIRSVTGTGANARASAPTSIAGNPEQGSVVVD 76930 + GL T N+ T G + G T + + GTG A + + AG GSVVV Sbjct: 199 EQGLIGSFTDNSTTEVGRTPG----TYSNVPASGGTGTGATFNVVVADAGGGVGGSVVVT 254 Query: 76931 ANRNAIIYK------------GSGQEWLKLRPLLEELDRPVPSVIIDVLLAEVNLNDREG 77074 Y G G + L L + I L + LN G Sbjct: 255 LANPGTGYNQGETLTIASAATGDGTDILVTVATLSD------GTIAITELKDWYLNTEIG 308 Query: 77075 -LGVDWQNITGSLGSKQLIFGTANGIGSSGLNISALNSAGQTKATLNAFYDNNQAVIRSS 77251 G+ +I G+ Q F T NGI ++ + +++ G+ T N + + + S Sbjct: 309 STGIKLGDIGPRPGTSQ--FATDNGITDDQVHFAVIDTTGELTGTANTIVERLTYLSKLS 366 Query: 77252 PKLMVRSGEEATIEVGNEI 77308 RS E A I N I Sbjct: 367 D---ARSEENANIYYKNVI 382 >ref|YP_006601.1|Gp21 Length = 3433 Score = 37.4 bits (85), Expect = 0.30 Identities = 44/212 (20%), Positives = 96/212 (45%), Gaps = 6/212 (2%) Frame = -3 Query: 90171 ASPQVEELYDALLQMASDRIAPDIQEVEGLIAALSEELQRSYSLLHYTDLCEIR-IGEFT 89995 AS + E YD L D A QE + I +EL ++ + ++ I + Sbjct: 811 ASDDIGEYYDKLTDAIKDTEA--WQEAQRDIEETHKELIKTAEAIREEVAQQVTDINQSI 868 Query: 89994 SQVAIQERQIADGNAQVDTLNQTIAEREGQIHTLNQLVAERDGQIGGLNGIVAERDGQIH 89815 A + RQ DG Q++++N++I E I+++NQ +++ I +N + + I+ Sbjct: 869 DDSASEIRQQVDG--QIESVNKSITEN---INSVNQTLSDN---ITAVNKSITDAVSDIN 920 Query: 89814 TLNQVILEREGQIGDLNEVIAEGNGQIHALNQVIAEKEEQVGSLNGVLAERDGQIRILNQ 89635 T + QI D+N+ + EG+ + + Q + +Q + G + + Q Sbjct: 921 T------SVDQQIADVNKTLTEGDAALKSQLQAVENSLKQ-----SIAQANTGWDKAVKQ 969 Query: 89634 VIAEREEQID-----GLNRIVVERDDQIHALD 89554 A+R ++ ++++ E+++++ A++ Sbjct: 970 ETADRIADVNAKAAQAADQLLNEKNERVAAIE 1001 >ref|YP_024843.1|Pas57 Length = 305 Score = 37.4 bits (85), Expect = 0.30 Identities = 28/74 (37%), Positives = 40/74 (54%) Frame = -1 Query: 27353 EIASSSSTPPSMAVG*TWPKSRSTYSPASAWTGASTPSSGCARRSPHGSNAATSSMPRST 27174 E+ S + PPS + + S ST + ASA T AS +S A S S A++S+ P +T Sbjct: 182 EVYSLTCAPPSTST--SASASASTSASASASTSASASTSASASASTSAS-ASSSASPSTT 238 Query: 27173 GSSPPRMRGSSYAA 27132 GS+ P S+ AA Sbjct: 239 GSASPSTTTSTTAA 252 >ref|NP_542287.1|unknown Length = 224 Score = 37.0 bits (84), Expect = 0.39 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 5/98 (5%) Frame = +1 Query: 36358 PASPKRSTSCLPRWPRQPSANRV*RACSSMPGMKPSLWLPSAATPMSPVTTPLTRPFSSW 36537 P S RS++C+P P V C+S M+P+ W SP + + F W Sbjct: 2 PVSTYRSSTCIPASSISPCPAPVIITCTSR--MRPT-WTRPERRCASPTRSAASPTFRRW 58 Query: 36538 STSA--TAKPGNTCTPSASACSPSQRT---RLPRLTMW 36636 + SA T++ + +SA P+QR+ RLP + W Sbjct: 59 TRSAWPTSRSRRLRSKISSARGPAQRSSKRRLPSIAAW 96 >ref|NP_599072.1|unknown Length = 162 Score = 37.0 bits (84), Expect = 0.39 Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Frame = +3 Query: 90120 HWPSAAERRTTPPPAEKLLCPDTDRPLRNGYAGVLPPRILPC-TRQKPDCPRRTQDPVLA 90296 H+P ER P P RP+RN Y G PR++ C TRQ + R L Sbjct: 58 HFPRLTERAQEPEPQPVR----ETRPVRNFYVGTNDPRVILCLTRQAEELESRG----LY 109 Query: 90297 RSAATERQALP*EGHSRQ 90350 R AAT A E HS+Q Sbjct: 110 RRAATVWMAAFRESHSQQ 127 >ref|NP_695166.1|minor capsid protein Length = 204 Score = 37.0 bits (84), Expect = 0.39 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 6/125 (4%) Frame = -3 Query: 89955 NAQVDTLNQTIAEREGQIHTLNQLVAERDGQIGGLN---GIVAERDGQIHTLNQVILERE 89785 NA ++ + Q +A+ + ++ ++ Q VA+RDGQI L G + + QI L + I ++ Sbjct: 24 NAGIEPIKQQVADTKSELDSVKQQVADRDGQIKSLGEQAGNSEKLNKQIAELQETIKTKD 83 Query: 89784 GQIGDLNEVIAEGNGQIHALNQVIAEKEEQVG---SLNGVLAERDGQIRILNQVIAEREE 89614 + + N AL A + + ++ V DGQ+ + + I + +E Sbjct: 84 SEAAASLTKVKTDNAVQMALRDAKARDAKAIMPFIDMDTVKLGDDGQLMGIGEQIEKLQE 143 Query: 89613 QIDGL 89599 D L Sbjct: 144 SHDYL 148 >ref|YP_025027.1|putative terminase large subunit Length = 629 Score = 37.0 bits (84), Expect = 0.39 Identities = 36/142 (25%), Positives = 61/142 (42%) Frame = +1 Query: 72667 RLQGKLDSEATLATLLHIIATRPRVQNAYLLQAPASRADNDDPFSRGQDIPDIGALPHLK 72846 +++ K D + T A + H A R ++ A S + +P + + P++ L K Sbjct: 278 KVKFKNDEDVTRAAIEHD-AVRDADNVFQVIYAQDSEDEVFEPETWAKSNPNLLELQKSK 336 Query: 72847 VDGQVYQGLGSSRFVLQDEGSLLSLLDPDRERWSALFQQHGLSLQQAERFLDQLQDYTDR 73026 D + + L R + EG+L + ++ WS FQ LSL +R + D R Sbjct: 337 RDN-LQKALNQDRNDNEREGTLETFVNKSLNLWSRRFQNSYLSLDNIQRSIIDHFDVNGR 395 Query: 73027 DDLRRLNGAVSNDYASQGLPPP 73092 D +G+ +ND S G P Sbjct: 396 DVFIGFDGSQTNDNTSFGFIYP 417 >ref|NP_076659.1|Orf5 Length = 169 Score = 37.0 bits (84), Expect = 0.39 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 4/122 (3%) Frame = -3 Query: 89934 NQTIAEREGQIHTLNQLVAERDGQIGGLNGIVAERDGQIHTLNQVILEREGQIG----DL 89767 +Q + + I L Q + +R+ Q+ N + Q++ LN I + + QI +L Sbjct: 32 HQNMVAVQQNISILKQRLLDRNEQLKQANNSSQQYADQLNQLNNRINQLKDQINQDNSNL 91 Query: 89766 NEVIAEGNGQIHALNQVIAEKEEQVGSLNGVLAERDGQIRILNQVIAEREEQIDGLNRIV 89587 A Q++ LNQ E Q+ N A QI LN + +++ D L++ V Sbjct: 92 QNQAASYQNQLNVLNQQKEEVARQLNQANQDKANMAQQISDLNSKLTAAQQKTDELSQAV 151 Query: 89586 VE 89581 + Sbjct: 152 TD 153 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 529,404,531 Number of Sequences: 14420 Number of extensions: 11239851 Number of successful extensions: 42152 Number of sequences better than 0.5: 35 Number of HSP's better than 0.5 without gapping: 10163 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 42014 length of database: 3,019,461 effective HSP length: 122 effective length of database: 1,260,221 effective search space used: 47651476452 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig49 (125,581 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_040655.1|unknown protein 270 2e-71 ref|NP_046572.1|ABC transporter 105 1e-21 ref|NP_047372.1|putative maturation protein 97 3e-19 ref|NP_061524.1|Orf28 92 1e-17 ref|NP_039614.1|gene IV product 87 4e-16 ref|NP_047359.1|maturation protein 79 1e-13 ref|NP_040579.1|G IV protein 78 2e-13 ref|NP_510894.1|phage assembly protein 67 5e-10 ref|NP_758949.1|ORF58 50 5e-05 ref|NP_958267.1|hypothetical protein 47 4e-04 ref|NP_665964.1|putative plasmid partitioning protein Soj 45 0.001 ref|YP_077256.1|group I glycosyltransferase 38 0.20 >ref|NP_040655.1|unknown protein Length = 430 Score = 270 bits (691), Expect = 2e-71 Identities = 153/427 (35%), Positives = 239/427 (55%), Gaps = 3/427 (0%) Frame = +1 Query: 52024 FAYTGERLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQNVPWDQALDLVLR 52203 FA+ +RL++ +ID+R + L+ADF ++V ++QG ++L +VP QA DL+L Sbjct: 17 FAFASDRLTVKHHEIDIRVAIPLVADFCGRSVVLGPSIQGVVSLDFDDVPCSQAFDLLLE 76 Query: 52204 TKGLDKRKIGNVLLVAPADXXXXXXXXXXXXXXXXXXXX---PLRRELLQVNYAKATDIA 52374 + L +G+VL++ D + R ++ + +A A+++ Sbjct: 77 SNHLLSSMVGDVLVITAMDQVLNSERKADDLRTFRRDLFNANDIERRVINIVHASASEVV 136 Query: 52375 KLFQSVTSSDEVEEQRGSITVDERTNNIIAYQTQDRLDELRRIVAQLDVPVRQVMIEARI 52554 LF+ S ++ S+TVDERTN++ A L ++ +DVPVRQV IEA + Sbjct: 137 SLFKESFMS--LDAPGMSMTVDERTNSVFAALPSSFFPALESVIQAIDVPVRQVAIEANV 194 Query: 52555 VEANVDYDKSLGVRWGGSFVNDQWSLYGKDGAQSVDDGQVFLPGTGQVGNFTLEDGMAPV 52734 VEA+VD+ K LG+ WGG+ WS V Sbjct: 195 VEASVDWSKRLGLNWGGALSLGNWSA---------------------------------V 221 Query: 52735 PFVDMGVANSTSGLGIGFISDHLILDLQLSAMEKTGNGEVISQPKVLTSDKETAKILTGE 52914 D+ VA +S +G GF+S+ L LD +AME GNG V+S+P +LT D+++A +L G Sbjct: 222 TAGDLSVAAGSS-IGFGFLSNTLSLDGLFTAMENEGNGRVVSRPTLLTLDRQSASVLRGT 280 Query: 52915 EIPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDQADFAKALNGVPPIN 53094 E+PYQ+++ GATS +FK AALSLEV P I+PDN I++EV V++D +F+ A++GVPPI+ Sbjct: 281 ELPYQQSAGDGATSVAFKHAALSLEVKPVISPDNSIVIEVLVSRDSPNFSNAIDGVPPID 340 Query: 53095 KNEVNAKVLIGDGETIVIGGVFSNIQAKSVDKVPFLGDLPFIGRLFRRDVVADSKSELLV 53274 N + + + G+T+V+GGV+S I + +V + +P IGRLF++ + ELL+ Sbjct: 341 TNRLVTTIRVPHGQTVVLGGVYSTINQQGSSRVSGISRIPGIGRLFKKKEHVTEQYELLI 400 Query: 53275 FLTPRIL 53295 FLTPRIL Sbjct: 401 FLTPRIL 407 >ref|NP_046572.1|ABC transporter Length = 705 Score = 105 bits (261), Expect = 1e-21 Identities = 91/453 (20%), Positives = 191/453 (42%), Gaps = 4/453 (0%) Frame = +1 Query: 117547 LYQGIGSFLGNYYLAKVARGVVHDLRCALFDNLLTLPNRYFDTHNSGHLISRITYNVTMV 117726 L + I F+ +Y + K++ V ++ F+ + LP +F+ G +ISR + + Sbjct: 217 LIRCIFDFVRSYLIIKLSYKVDKEMSNVYFNKVTKLPINFFENREDGEVISRFNDGIYIK 276 Query: 117727 TGAATDAVKVVIREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVTAASRRFRKQSRK 117906 + + V +I + + +K+++K Sbjct: 277 DFFSANFVTAII-DIILILGLGVILYRTNNILFLTIILPILLLSCLAILFFDHLKKKNQK 335 Query: 117907 IQDAMGDVTHVASETIQGYRVVRSFGGETYEQERFHKASALNMNRSLSMTRTQAVYTPLL 118086 + + T + ++ V S ++ E+FH +N + S+ + + +L Sbjct: 336 LMEDKAKSTSLLINFLKNMTTVYSLNKTSFFLEKFHLTYDKQLNSTFSVAKA-VISNEIL 394 Query: 118087 QLVIYSGMAVLMYMV---LYLRGNASAGDLIAYITAAGMLPKPIRQLSEVSATIQKGLAA 118257 + +I + +++ V L + S G L+ T A L + ++ + + +Q+ A Sbjct: 395 KGLIQNSFTIIILWVGTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHVA 454 Query: 118258 ADSIFSQLDEEAEVDRGRIERER-VAGRLEVRDLSFAYPGSERPVLNGIDFSVEPGQMVA 118434 + F ++ + D E ++ +L+ R ++ I+ ++ V Sbjct: 455 SIRFFDVVNYPVQQDSNENLTELDFIQNIKTVNLNIG-ADPMRYIVEDINLILDRKDKVL 513 Query: 118435 LVGRSGSGKSTLANLIPRFYQHRQGQILLDGIAVEDYRLRNLRRHIALVTQQVTLFNDSV 118614 ++G SG+GKST A + + Y+ I L+G+ + Y ++R+ I + + LF ++ Sbjct: 514 IIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTI 573 Query: 118615 ANNIAYGDLXXXXXXXXXXXXXXXXXXXFVDKLPQGFDTEVGENGVTLSGGQRQRLAIAR 118794 N+ G++ F+ L + + ++ ENG LS GQ+QRLA+AR Sbjct: 574 KENLCMGEIFDQNEIENACIMSQCHE--FICNLDKQYSYKLSENGSNLSTGQKQRLALAR 631 Query: 118795 ALLKDAPLLILDEATSALDTESERHIQAALDRV 118893 A+L +LILDE+ S +D ++ + I L R+ Sbjct: 632 AILHQPQVLILDESLSNIDPDNTKLIYETLHRM 664 >ref|NP_047372.1|putative maturation protein Length = 500 Score = 97.4 bits (241), Expect = 3e-19 Identities = 102/408 (25%), Positives = 176/408 (43%), Gaps = 16/408 (3%) Frame = +1 Query: 52105 TDLNLVASDTVQGNITLRLQNV---PWDQALDLVLRTKGLDKRKIGN--VLLVAPADXXX 52269 T + +V V G+++ ++ + D VLR G K GN V+ +AP Sbjct: 86 TGIKVVLGQGVLGSVSFTAPDLVPAEYPAFFDSVLRAHGYYLVKDGNAYVIKIAPE---- 141 Query: 52270 XXXXXXXXXXXXXXXXXPLRRELLQVNYAKATDIAKLFQSV---TSSDEVEEQRG---SI 52431 P +L + NY + + ++ L QS TSS+ V++++ S+ Sbjct: 142 -----------AKEVITPAIVKLYRFNYIRNSKLSDLVQSTLKATSSEFVKDKQVDNYSV 190 Query: 52432 TVDERTNNIIAYQTQDRLDELRRIVAQLDVPVRQVMIEARIVEANVDYDKSLGVRWGGSF 52611 + TN +I T +L++L +++ +DVP RQ+ IEA I E + + LGV +F Sbjct: 191 EILPNTNALIVSGTAQQLEKLDVLLSAIDVPQRQIFIEAVITETELGDNSELGVNLQAAF 250 Query: 52612 VNDQWSLYGKDGAQSVDDGQVFLPGTGQVGNFTLEDGMAPVPFVDMGVANSTSGLGIGFI 52791 D A V T V L+D + FI Sbjct: 251 ----------DKAGFV---------TNLVNASKLKDNL--------------------FI 271 Query: 52792 SDHLILDLQLSAMEKTGNGEVISQPKVLTSDKETAKILTGEEIPYQEASSSGATSTSF-- 52965 + + + A+ + + ++S+P +L D+E I G+ +P+ ++S+ TS Sbjct: 272 FESGDFNALVKAISGSSDTRLLSRPNILIMDRERGYITVGQNVPFLVSNSTTDGGTSVQR 331 Query: 52966 ---KEAALSLEVTPQITPDNRIIMEVKVTKDQADFAKALNGVPPINKNEVNAKVLIGDGE 53136 K+ +SLEVTP + D+ I++ + + D A + + NK + V + G+ Sbjct: 332 IERKDVGVSLEVTPHVMGDDVILVINQESSSVTDSTIAADIIT--NKRTLMTTVAVKSGQ 389 Query: 53137 TIVIGGVFSNIQAKSVDKVPFLGDLPFIGRLFRRDVVADSKSELLVFL 53280 TIV+GG+ S+ + VP L D P IG LFR + + EL V + Sbjct: 390 TIVLGGLISDEKRNVESGVPVLKDTPLIGGLFRSTSTKNVQKELRVVI 437 >ref|NP_061524.1|Orf28 Length = 687 Score = 92.0 bits (227), Expect = 1e-17 Identities = 112/434 (25%), Positives = 166/434 (38%), Gaps = 43/434 (9%) Frame = +3 Query: 122997 MSLDILAPTAGAQAFRRDINGLRAWAVTAVVLYHXXXXXXXXXXXXXXXXXXXXXXLMTG 123176 M +++ + + ++ I+GLRA ++ AVVLYH L+ Sbjct: 1 MGMNVNSGIRISSGYKPFIDGLRALSILAVVLYHAGVPMVYGGFVGVDIFFVISGFLIVT 60 Query: 123177 IIGKGLQRGDFSLWNFYXXXXXXXXXXXXXXXXXXXXXGWFFL-MPREYEALGGDARRTL 123353 I +Q F F+ F L +PRE G + Sbjct: 61 HIVSSIQDDRFLFGEFWARRALRILPPYLLVLFVCSAIAPFILVLPREINEFGDQVIYSA 120 Query: 123354 LFASNLRYLRESGYFDEEAHEKWLLHSWSLSVEWQFYXXXXXXXXAVW----RLFPGRRA 123521 L N +L + GYFD + K LLH WSLSVE QFY ++ RL G+R Sbjct: 121 LMLVNHYFLGQQGYFDGLSETKPLLHLWSLSVEEQFYIVAPVVIFLLYVSTSRL--GQRK 178 Query: 123522 MXXXXXXXXXXSFGV----CVALTLSEPPK--AFYLLRSRAWEXXXXXXXXXXXENPRLS 123683 F V C+AL+ K +F+L+ RAWE P Sbjct: 179 ASVISVFSVLCVFAVSLYGCIALSGDGAGKNYSFFLMPLRAWEFIAGGAIAFAV--PFAQ 236 Query: 123684 ARTRLTLEWLGLLSIVC---AVVFLDSSSRWPGWLALVPCIGTLSVLLA-----RREASP 123839 RL LE + + +V A+ F + S +P ALVP IG ++L + S Sbjct: 237 RLGRLALEIIAIAGVVMLFYAIFFFNGKSPYPAGKALVPVIGAALIILCGVSNHKILVSR 296 Query: 123840 WTGNAVAQWLGTRSYSIYLWHWPLVA-GLAYCEKLDSPAWVLSALFATLLLGQLSYASIE 124016 V +G SY+ YLWHWPL+ G Y S A LS + +L ++Y ++ Sbjct: 297 ILSFRVFVMIGLVSYAWYLWHWPLLTFGRIYSFGHKSIALDLSMVAIAFVLACITYVYVD 356 Query: 124017 ---LPARRGL-HGQA------------PRWVAAALLEHFYLIPI-------HIRLPRSSA 124127 L R+ L HG + P V+ + + + + I P SSA Sbjct: 357 KKVLNWRKSLKHGASWKHSAYAVAFCIPALVSGVYISKYMSVSVGNGFTEAQIPRPPSSA 416 Query: 124128 CSPVQRTAQSPRQC 124169 + A+SP +C Sbjct: 417 GNCNLHLAESPSKC 430 >ref|NP_039614.1|gene IV product Length = 428 Score = 87.0 bits (214), Expect = 4e-16 Identities = 52/193 (26%), Positives = 98/193 (50%), Gaps = 8/193 (4%) Frame = +1 Query: 52747 MGVANSTSGLGIGFISDHLILDLQLSAMEKTGNGEVISQPKVLTSDKETAKILTGEEIPY 52926 +G A ST+G G + + IL L L A++ N +VIS P++LT ++ I G+ +P+ Sbjct: 237 LGTALSTAGGSFGIFNGN-ILALSLQAVQSDSNSKVISTPRILTQSGQSGYISVGQNVPF 295 Query: 52927 QEASSSGATST--------SFKEAALSLEVTPQITPDNRIIMEVKVTKDQADFAKALNGV 53082 +G ++ ++ +SL+VTP + + ++++ + D +A+ Sbjct: 296 VTGKVTGEAASVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLS-NQAIASD 354 Query: 53083 PPINKNEVNAKVLIGDGETIVIGGVFSNIQAKSVDKVPFLGDLPFIGRLFRRDVVADSKS 53262 N+ ++ V I DG+T+++GG+ S+ Q S VPF+ +P IG LFR + Sbjct: 355 IITNQRQIQTTVQIKDGQTLLLGGLISSNQFDSDRSVPFMSKIPLIGWLFRSHSDSKDDR 414 Query: 53263 ELLVFLTPRILNS 53301 + V LT ++ + Sbjct: 415 TMFVLLTAHVIRA 427 >ref|NP_047359.1|maturation protein Length = 429 Score = 78.6 bits (192), Expect = 1e-13 Identities = 45/187 (24%), Positives = 89/187 (47%), Gaps = 8/187 (4%) Frame = +1 Query: 52762 STSGLGIGFISDHLILDLQLSAMEKTGNGEVISQPKVLTSDKETAKILTGEEIPYQEASS 52941 S++G G + + IL L L A+E + ++S P++LT + G+ +P+ Sbjct: 243 SSTGGSFGIFNGN-ILGLSLKALETSSKSTLLSMPRILTMSGQPGTFTAGQNVPFVTGRV 301 Query: 52942 SGATST--------SFKEAALSLEVTPQITPDNRIIMEVKVTKDQADFAKALNGVPPINK 53097 +G + + +SL+V P +TP +IM+V D ++ + + N Sbjct: 302 TGEAANVNNPFQTIERHDVGISLKVVPVVTPGGLLIMDVSTNADSISDSQTASDIIT-NT 360 Query: 53098 NEVNAKVLIGDGETIVIGGVFSNIQAKSVDKVPFLGDLPFIGRLFRRDVVADSKSELLVF 53277 ++ V + G+T+++GG+ N ++ S VP++ +P IG LF +K L + Sbjct: 361 RSISTTVQLKSGQTVLLGGMVDNRESDSDSSVPWVSKIPLIGALFTSKSSNANKRTLYIL 420 Query: 53278 LTPRILN 53298 + R++N Sbjct: 421 IRARVVN 427 >ref|NP_040579.1|G IV protein Length = 437 Score = 77.8 bits (190), Expect = 2e-13 Identities = 46/193 (23%), Positives = 93/193 (48%), Gaps = 8/193 (4%) Frame = +1 Query: 52747 MGVANSTSGLGIGFISDHLILDLQLSAMEKTGNGEVISQPKVLTSDKETAKILTGEEIPY 52926 +G A ST+G G + + +L L + A++ N +VIS P++LT +T I G+ +P+ Sbjct: 246 LGTALSTAGGSFGIFNGN-VLALSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQNVPF 304 Query: 52927 QEASSSGATST--------SFKEAALSLEVTPQITPDNRIIMEVKVTKDQADFAKALNGV 53082 +G + ++ +SL+VTP + + ++++ + D + + Sbjct: 305 VTGKVTGEAANVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLTSQMTASDI 364 Query: 53083 PPINKNEVNAKVLIGDGETIVIGGVFSNIQAKSVDKVPFLGDLPFIGRLFRRDVVADSKS 53262 N+ + V I DG+T+++GG+ + VP+ +P IG LFR + ++ Sbjct: 365 IT-NQRHMQTTVQIKDGQTLLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNER 423 Query: 53263 ELLVFLTPRILNS 53301 + V LT ++ + Sbjct: 424 TMFVLLTAHVIKA 436 >ref|NP_510894.1|phage assembly protein Length = 426 Score = 66.6 bits (161), Expect = 5e-10 Identities = 63/331 (19%), Positives = 133/331 (40%), Gaps = 8/331 (2%) Frame = +1 Query: 52333 ELLQVNYAKATDIAKLFQSVTSSDEVEEQRGSITVDERTNNIIAYQTQDRLDELRRIVAQ 52512 + ++N +A D+ ++ + S+ + ++ + +N ++ +D LD L + ++ Sbjct: 133 QTFKINNVRAKDLIRVVELFVKSNT--SKSSNVLSIDGSNLLVVSAPKDILDNLPQFLST 190 Query: 52513 LDVPVRQVMIEARIVEANVDYDKSLGVRWGGSFVNDQWSLYGKDGAQSVDDGQVFLPGTG 52692 +D+P Q++IE I E D G+Q G Sbjct: 191 VDLPTDQILIEGLIFEVQQ---------------GDALDFSFAAGSQR-----------G 224 Query: 52693 QVGNFTLEDGMAPVPFVDMGVANSTSGLGIGFISDHLILDLQLSAMEKTGNGEVISQPKV 52872 V D + V S++G G + +L L + A++ + +++S P++ Sbjct: 225 TVAGGVNTDRLTSVL--------SSAGGSFGIFNGD-VLGLSVRALKTNSHSKILSVPRI 275 Query: 52873 LTSDKETAKILTGEEIPYQEASSSGATST--------SFKEAALSLEVTPQITPDNRIIM 53028 LT + I G+ +P+ +G ++ + +S+ V P I++ Sbjct: 276 LTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVL 335 Query: 53029 EVKVTKDQADFAKALNGVPPINKNEVNAKVLIGDGETIVIGGVFSNIQAKSVDKVPFLGD 53208 ++ D + + V N+ + V + DG+T+++GG+ VPFL Sbjct: 336 DITSKADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSK 394 Query: 53209 LPFIGRLFRRDVVADSKSELLVFLTPRILNS 53301 +P IG LF ++ +S L V + I+ + Sbjct: 395 IPLIGLLFSSRSDSNEESTLYVLVKATIVRA 425 >ref|NP_758949.1|ORF58 Length = 210 Score = 50.1 bits (118), Expect = 5e-05 Identities = 52/232 (22%), Positives = 97/232 (41%), Gaps = 5/232 (2%) Frame = +3 Query: 66381 MLAESSVDRAEGGDGMRRVVFNQKGGVGKSSIACNLAAVSAAEGYRTLLVDLDSQANSTH 66560 ++ + ++R E + NQKGG GK++I+ N+A+ A+G++ LLVDLD Q ++T Sbjct: 6 LILYAHINREENEMAKLIAILNQKGGAGKTTISTNVASQLHADGHKVLLVDLDPQGSAT- 64 Query: 66561 YLSGFCGEDIPLGIADFFKQVLTGGVGRRPKVKVIETPFANLDLVTASTELADLQPKLET 66740 D+ +Q G P +++ +T ++ V + E Sbjct: 65 ---------------DWSEQAEEGSEA-VPVIRMGKTCTCDIHKVASGYE---------- 98 Query: 66741 KHKITXXXXXXXXXXXXXXXIYLDTPPALNFYTVSALIAADRVLI-----PFDCDSFSRQ 66905 + +D P + +A+ AAD VLI P+DC S Sbjct: 99 ------------------YLVSVDGAPQVADLAATAVRAADMVLIPTQPSPYDCWS---- 136 Query: 66906 ALYALLAEIDELREDHNEHLQVEGIVVNQFLPQAVLPQRMLDELIAESLPVL 67061 A L EI + R++ + + ++++ + + L + + L LP+L Sbjct: 137 --AAELVEIVKARQEVTDGIPKAAFIISRAIKRTKLEAEIKEALDYYELPIL 186 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 47.0 bits (110), Expect = 4e-04 Identities = 52/174 (29%), Positives = 61/174 (35%), Gaps = 22/174 (12%) Frame = -2 Query: 124068 RRRPIGAPAR---ASHAVPEARSRHRKAGQAAGSRR----ARTGPRPGCPASRNRQGPR- 123913 R P PAR H P+ R + AAG RR ART PR P GP Sbjct: 36 RPHPHLGPARDRSPDHPEPDHPCRRAPSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAV 95 Query: 123912 --------PAANATD------RSSTSGCQATGPRHCRSRAKLRAVPAVPIGSRCRAPAPA 123775 PAA A R C G H R+RA AVP+G R P Sbjct: 96 HPAAPGCAPAAPAAPEYAPALRPRAPECDR-GAHHLRTRAPRTRTRAVPLGPGARVRTPV 154 Query: 123774 NPASGSTSPERPRHRRSRAGQATPELAWYGRKASGSQRTGRAGRQPETPMPATA 123613 + RP RR + P L + G++R GR R P P A Sbjct: 155 EDRRRTRRRRRPDPRR----RVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAA 204 >ref|NP_665964.1|putative plasmid partitioning protein Soj Length = 256 Score = 45.4 bits (106), Expect = 0.001 Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 1/170 (0%) Frame = +3 Query: 66426 MRRVVFNQKGGVGKSSIACNLAAVSAAEGYRTLLVDLDSQANSTHYLSGFCGEDIPLGIA 66605 MR V NQKGG GK++ N+A G L++DLD Q ++T L D P Sbjct: 1 MRIGVTNQKGGAGKTTTTLNVAGALNQLGNDVLVIDLDPQGHATEGLGFEDLYDDP--ER 58 Query: 66606 DFFKQVLTGGVGRRPKVKVIETPFANLDLVTASTELADLQPKL-ETKHKITXXXXXXXXX 66782 D VL + R +++ + +D V + + + + L + Sbjct: 59 DSLFDVLP-ELERMDELEQLVVEHQEVDCVPSHETMINAEDALANVMKREERLEMLLDDA 117 Query: 66783 XXXXXXIYLDTPPALNFYTVSALIAADRVLIPFDCDSFSRQALYALLAEI 66932 + +D PP L T +A++A VLIP S S +A+ L ++ Sbjct: 118 DGRWDYVLVDCPPNLGVLTDNAIVATGNVLIPAQAKSTSIRAIELLFKQL 167 >ref|YP_077256.1|group I glycosyltransferase Length = 329 Score = 38.1 bits (87), Expect = 0.20 Identities = 33/116 (28%), Positives = 50/116 (43%) Frame = +3 Query: 110313 RQALGLPEGAWIVGNVGRLHPDKDQATLLRGFAEALPRLPAGSLLAILGSGRLEAELKAL 110492 R+ G+P I+ NV HP KD L R +L L +G G + + Sbjct: 172 REMYGIPPNKKIILNVTNYHPRKDLPRLRR----IREKLGDDYYLITVGKGNIYGDKSI- 226 Query: 110493 AGTLGIDRQVRFLGQIPEARRYFRAFDVFALSSDHEPFGMVLLEAMAAGVPLIATD 110660 GT+ D ++ L + DV+ +S E F + L+EA A G+P + TD Sbjct: 227 -GTIS-DTELSLL---------YAGSDVYLSASQDEGFELPLVEAAAHGLPAVVTD 271 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 537,688,876 Number of Sequences: 14420 Number of extensions: 10909468 Number of successful extensions: 43441 Number of sequences better than 0.5: 12 Number of HSP's better than 0.5 without gapping: 9917 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 43259 length of database: 3,019,461 effective HSP length: 122 effective length of database: 1,260,221 effective search space used: 52597843877 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig50 (137,425 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945089.1|gp58 53 6e-06 ref|NP_046572.1|ABC transporter 50 5e-05 ref|NP_958267.1|hypothetical protein 42 0.015 ref|YP_006492.1|IddB 39 0.12 ref|NP_958295.1|hypothetical protein 38 0.21 ref|NP_203471.1|virion structural protein 38 0.21 ref|NP_570367.1|collagen alpha 1(I) chain precursor 37 0.36 ref|NP_892047.1|terminase large subunit 37 0.36 ref|NP_542289.1|unknown 37 0.47 ref|NP_047971.2|gp26 37 0.47 >ref|NP_945089.1|gp58 Length = 297 Score = 53.1 bits (126), Expect = 6e-06 Identities = 32/79 (40%), Positives = 40/79 (50%) Frame = -3 Query: 95669 LESLAALDAVVRHGGFGRAAQHLHKVQSAVSYQVRKLEEQLGLALLDREGYRVRLTPAGE 95490 L+ L DA RHG F RAA+ L+ Q AVS QV KLE LG L R+ + LT AG+ Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 95489 TLLAEGRRLLGNAARFEAL 95433 +L + AL Sbjct: 69 QYADRVHAILADCVEATAL 87 >ref|NP_046572.1|ABC transporter Length = 705 Score = 50.1 bits (118), Expect = 5e-05 Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 11/183 (6%) Frame = -1 Query: 17662 IRDFTLDIREGESIAILGSSGCGKSTLLRLLIGLDETFDGQILIDGQPVR---GIGSERG 17492 + D L + + + I+G SG GKST + L L + D I ++G + + + Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 17491 IVFQEHRLFPWL-NVAQNVDLGLVNENLPPEQR--RRRVEEFIRLVELDGFQRAYP---- 17333 IV+ + F + + +N+ +G + + E + EFI LD Q +Y Sbjct: 559 IVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFI--CNLDK-QYSYKLSEN 615 Query: 17332 -HQLSGGMAQRVAIARGLVASPRILLLDEPFAALDALTRQQMQEELQAIRARSGITSLLV 17156 LS G QR+A+AR ++ P++L+LDE + +D + + E L R +L+ Sbjct: 616 GSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLH----RMDCLIILI 671 Query: 17155 THD 17147 TH+ Sbjct: 672 THN 674 Score = 48.1 bits (113), Expect = 2e-04 Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 11/168 (6%) Frame = +2 Query: 113060 RRLLQQISLQLPQGQTVGLIGHNGSGKSTLVKLLARQLEPTGGRLRLDGRPLNEWPEREF 113239 R +++ I+L L + V +IG +G+GKST K L++ + + L+G +N + Sbjct: 496 RYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSI 555 Query: 113240 ARHVAYLPQRLPAVENLTVRELVGFGRYPWHGPLGRFGADDRLHVERALELTGAAGF--- 113410 + + Y+ + P + T++E + G D+ +E A ++ F Sbjct: 556 RKRIVYIDEN-PFLFKGTIKENLCMGE-----------IFDQNEIENACIMSQCHEFICN 603 Query: 113411 --------AERPAERLSDGERQRVWLAMLLAQNTRYLLLDEPSSAPDP 113530 LS G++QR+ LA + + L+LDE S DP Sbjct: 604 LDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDP 651 Score = 45.1 bits (105), Expect = 0.002 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 1/156 (0%) Frame = -1 Query: 110842 IAGLMGAGRTNVAETLFGVTPASQGEIRIDGEPVNMNDPCLAIRKGLALLTEDRKDTGIF 110663 I G G G++ A++L + I ++G +N D L+IRK + + E+ Sbjct: 514 IIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDH-LSIRKRIVYIDENP----FL 568 Query: 110662 ACLSVQENMEVTVLPNFASRGFVQRQRLRELCEEMRRKL-RVKTPSLEQCIANLSGGNQQ 110486 +++EN+ + + ++ + C E L + + L + +NLS G +Q Sbjct: 569 FKGTIKENL---CMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQ 625 Query: 110485 KALLARWLMTQPRVLILDEPTRGIDVGAKAEIYKLI 110378 + LAR ++ QP+VLILDE ID IY+ + Sbjct: 626 RLALARAILHQPQVLILDESLSNIDPDNTKLIYETL 661 Score = 38.9 bits (89), Expect = 0.12 Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 8/209 (3%) Frame = -1 Query: 111634 LSDVQLRVRPGTVLALMGENGAGKSTLMKIIAGIHQPDTGELRLRGQAVSFETPLAALQA 111455 + D+ L + + ++GE+G GKST K ++ +++ + L G ++ L +++ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHL-SIRK 557 Query: 111454 GIAMIHQELNLMPFM---SIAENIWLG-----REPLNAMRMVDHRRMHRQTRELFERLRI 111299 I I + PF+ +I EN+ +G E NA M + H L ++ Sbjct: 558 RIVYIDEN----PFLFKGTIKENLCMGEIFDQNEIENACIM---SQCHEFICNLDKQYSY 610 Query: 111298 DLDPEAPVGSLSIAGRQMVEIAKAVSYDSDVLIMDEPTSAITDKEVAHLFSIIADLKAAG 111119 L +LS +Q + +A+A+ + VLI+DE S I ++ + + Sbjct: 611 KLSENG--SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCL- 667 Query: 111118 KGIIYITHKMDEVFAIADEVAVFRDGAYI 111032 II ITH F ++ VFR+ I Sbjct: 668 --IILITHNDPSNFKY-NKKLVFRNNRII 693 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 42.0 bits (97), Expect = 0.015 Identities = 79/281 (28%), Positives = 95/281 (33%), Gaps = 17/281 (6%) Frame = +1 Query: 60058 RVQIHQEGRPRTRSAPSGHLHRLRARSDEGADEGRHHRPCQAAARRRPLSGPDRTGNHRR 60237 R + H R R+ P HL R RS D PC+ A R P +GP R R Sbjct: 22 RTRAHPRAHRRVRTRPHPHLGPARDRSP---DHPEPDHPCRRAPSR-PAAGPRRHPPVAR 77 Query: 60238 RDAQPHRQRTGDPAGHREAPGSLRAXXXXXXXXXXXXXXXXGIPLPARHPDAPGQPGAAV 60417 R RT P AP P PA HP APG AA Sbjct: 78 T-----RPRTRAPEC---APD----------------------PGPAVHPAAPGCAPAA- 106 Query: 60418 PGDPHRPP---------ERGA--LPGAVARLRRRHA----GRKGTAPLPNHHRGRRRXXX 60552 P P P +RGA L R R R G + P+ + R RRR Sbjct: 107 PAAPEYAPALRPRAPECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRR--- 163 Query: 60553 XXXXXXXXXQAVPPRAQRRLPFQLAAQDRG-RLPASVRPDPRQHGRPATEPRPASAPVGG 60729 + V PR + + A+ G R+ RP P RP P P P Sbjct: 164 ---RRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHP-EHPRAV 219 Query: 60730 RPAPRL-LRHRGRQREGQGYPPDRTARPLRDPRRTDGDAPT 60849 RP R RHR R + R+ P+ P G A T Sbjct: 220 RPRRRTGRRHRRRASLRPRHRRHRSTPPMNTPLTLAGLALT 260 Score = 39.3 bits (90), Expect = 0.095 Identities = 42/141 (29%), Positives = 55/141 (39%), Gaps = 6/141 (4%) Frame = +2 Query: 43892 RRPQLPPETG---QPRRPQWLVGDPAAQAERLSRRPGQHPCAAIRPRSGHRPGLYRRSGP 44062 R P+ P+ G P P PAA + RP C R H R P Sbjct: 83 RAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRPRAPEC----DRGAHH---LRTRAP 135 Query: 44063 GQQRQE--LAPG-RVFRLADHRAVRRPVRHRLPEGHPPGRRRPALAVHRRTAGLRLQRAV 44233 + + L PG RV + R RR R R P+ + R + VHRR R+ R V Sbjct: 136 RTRTRAVPLGPGARVRTPVEDR--RRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRV 193 Query: 44234 QADRRAGPRPDQGPRRYPQAD 44296 + R GP + PRR P + Sbjct: 194 RVRARPGPGAARRPRRRPHPE 214 Score = 38.1 bits (87), Expect = 0.21 Identities = 50/166 (30%), Positives = 54/166 (32%), Gaps = 8/166 (4%) Frame = -2 Query: 58407 APRRALHPGAHRSLRAYR*PGL-PAEEGNLRELVRKPDRPAGTLVSPGHRPTVQGKPSRP 58231 APR HP AHR +R P L PA + R PD P +P P Sbjct: 20 APRTRAHPRAHRRVRTRPHPHLGPARD-------RSPDHP---------------EPDHP 57 Query: 58230 GRIRRPGTEAGSARYHLSALPAGRRRRRHY------QPGAGVQRRQSGRHPAGAHRPA-T 58072 R R P A R H P R R R PG V G PA P Sbjct: 58 CR-RAPSRPAAGPRRH---PPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYA 113 Query: 58071 GARRPYRPVHGGQDAYGTLAGDRPLDRRAVAGDCKRAETPVRDRYR 57934 A RP P + R R G R TPV DR R Sbjct: 114 PALRPRAPECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRR 159 >ref|YP_006492.1|IddB Length = 132 Score = 38.9 bits (89), Expect = 0.12 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Frame = +2 Query: 77468 MPTRVASPAFLSSAASRTKVWPFSSSTLPSAKREMRILGPCRSARIATKRPCLAAISRTR 77647 MP+ + A L ++ + +W S + SA R +RI G SA I T+R L A+++ Sbjct: 1 MPSTIVVTACLCASPDKACIWTKSLAAALSAVRTLRISGSGSSATILTRRASLYALAKI- 59 Query: 77648 VARAWCSSALPWEKFRRTTSTPALTRP-SMASGVSVAGPRVATILVRRCRPILS 77806 A+C + R ++TRP + + V PR+ L+R R LS Sbjct: 60 ---AFCIRSTSC----RVGRPSSVTRPAACVAPTCVINPRINASLLRLSRSPLS 106 >ref|NP_958295.1|hypothetical protein Length = 215 Score = 38.1 bits (87), Expect = 0.21 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Frame = -3 Query: 134162 TSTCRTCWRSPGSTRTGCTAAVWPRTTCCPTAPSPRCPTTSPATCCRPA--PSSAAIGTR 133989 T+ C WRSPGS T + P + C P+PR T P+ CRP+ P +A T Sbjct: 6 TTFCSGSWRSPGSAPTAPHCSASPAS--CSDGPAPR-STRPPSPPCRPSRPPCTAGTPTA 62 Query: 133988 C 133986 C Sbjct: 63 C 63 >ref|NP_203471.1|virion structural protein Length = 583 Score = 38.1 bits (87), Expect = 0.21 Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 10/113 (8%) Frame = -2 Query: 5922 RAMGLNVAAVDVDDAKLELARRLGASLTVNARDQDPTAFLHKEIGGMHGVLVTAVSPKAF 5743 RA + A ++ + EL R + AR+Q P AF+ ++ G G+ V+P A Sbjct: 114 RAAKVEARASQLNPSSYELVRDAVRNEADEAREQQPGAFITGQVLG--GLATAPVTPGAG 171 Query: 5742 EQALGMARRGGTV--ALNG-------LPPGEFSLSIFDMVLNGTT-VRGSIVG 5614 +LG R G V A +G L GE+ +I D L G T G VG Sbjct: 172 AASLGQLVRTGAVMGAASGLGDSNADLSRGEYDRAILDTALGGATGAAGGAVG 224 >ref|NP_570367.1|collagen alpha 1(I) chain precursor Length = 302 Score = 37.4 bits (85), Expect = 0.36 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Frame = +2 Query: 79730 PPGSQVSHADPRGRRPHGPLPDRG-AGARGLRHPGDQGRPGTPDRDGPAGHQGPRYLP 79900 P G + D P GP D G AG +GL+ GD G G GP G QGP+ P Sbjct: 96 PQGPKGDKGDTGDAGPQGPKGDTGDAGPQGLK--GDPGNDGADGATGPEGPQGPQGNP 151 >ref|NP_892047.1|terminase large subunit Length = 577 Score = 37.4 bits (85), Expect = 0.36 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Frame = -2 Query: 134670 IRNLMDKTLQVHDHIVHFYHLHALD-WVNPVNALKADPKATSAL--QQAVSPAH-AKSSP 134503 ++ +DK L Y L ALD W +P N +KA+P ++ + V H AK+ P Sbjct: 254 VKQCLDKMLPNERLFGMIYELDALDNWQDPCNLIKANPNLGVSVFYEDLVEKLHLAKTVP 313 Query: 134502 GYFRDVQTRLKKFVESGQLGLFSNGYW 134422 D++T+ SG+ F+ +W Sbjct: 314 RMTNDIKTKHLNMWVSGKTAFFNMDHW 340 >ref|NP_542289.1|unknown Length = 134 Score = 37.0 bits (84), Expect = 0.47 Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 4/36 (11%) Frame = +2 Query: 69965 SGLRAMRAASRAQRCACPPRA----GHGRRSRSRPG 70060 S + +R ASR++ CA PPR G GRRSR RPG Sbjct: 90 SSMPKIRMASRSRYCAMPPRTRSMRGRGRRSRLRPG 125 >ref|NP_047971.2|gp26 Length = 174 Score = 37.0 bits (84), Expect = 0.47 Identities = 16/42 (38%), Positives = 28/42 (66%) Frame = -1 Query: 35500 IASGRLLAESRLPTEHQLAEQLNVSRSVIREAVSQLKADGIL 35375 IA+GR +LP+E + E L + R+ +R+ +++L A+GIL Sbjct: 34 IATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGIL 75 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 596,578,637 Number of Sequences: 14420 Number of extensions: 12362932 Number of successful extensions: 47740 Number of sequences better than 0.5: 10 Number of HSP's better than 0.5 without gapping: 10312 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 47481 length of database: 3,019,461 effective HSP length: 123 effective length of database: 1,245,801 effective search space used: 56913172884 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig51 (153,738 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_861694.1|gp60plus39 large subunit topoisomerase II 161 2e-38 ref|NP_943883.1|topoisomerase II large subunit 154 3e-36 ref|NP_932362.1|topoisomerase II large subunit 145 8e-34 ref|NP_049621.1|gp39 topoisomerase II, large subunit, N-terminal... 131 2e-29 ref|NP_891577.1|topoisomerase II large subunit 129 1e-28 ref|NP_899293.1|topoisomerase II large subunit 125 1e-27 ref|NP_861955.1|gp52 topoisomerase II, medium subunit 110 3e-23 ref|NP_049875.1|gp52 topoisomerase II, medium subunit 103 6e-21 ref|NP_944225.1|gp52 topoisomerase II medium subunit 101 2e-20 ref|YP_024677.1|gp04 94 3e-18 ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family 94 3e-18 ref|NP_932596.1|topoisomerase II medium subunit 84 3e-15 ref|NP_891840.1|topoisomerase medium subunit 83 8e-15 ref|NP_899529.1|topoisomerase II small subunit 82 2e-14 ref|NP_046572.1|ABC transporter 80 7e-14 ref|NP_945089.1|gp58 57 5e-07 ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase 54 4e-06 ref|NP_958267.1|hypothetical protein 49 1e-04 ref|NP_859265.1|hypothetical protein 45 0.002 ref|NP_859099.1|hypothetical protein 45 0.002 ref|NP_050557.1|hypothetical protein 45 0.002 ref|NP_049519.1|putative tail fiber protein 45 0.002 ref|NP_049618.1|gp60 topoisomerase II, large subunit, C-terminal... 44 0.006 ref|NP_612899.1|hypothetical protein 41 0.028 ref|NP_061524.1|Orf28 40 0.047 ref|YP_024827.1|Pas41 40 0.047 ref|NP_958295.1|hypothetical protein 40 0.062 ref|YP_164268.1|hypothetical protein 39 0.14 ref|NP_859271.1|hypothetical protein 39 0.18 ref|NP_612905.1|hypothetical protein 39 0.18 ref|NP_859105.1|hypothetical protein 39 0.18 ref|NP_046574.1|unknown 39 0.18 ref|NP_665998.1|putative C5-cytosine methyltransferase 38 0.23 ref|YP_024843.1|Pas57 38 0.23 ref|YP_164323.1|hypothetical protein 37 0.40 >ref|NP_861694.1|gp60plus39 large subunit topoisomerase II Length = 606 Score = 161 bits (407), Expect = 2e-38 Identities = 170/604 (28%), Positives = 265/604 (43%), Gaps = 19/604 (3%) Frame = +1 Query: 124327 LAQEVIDNSVDEALAGHAKSVQVI--LHEDNSLEVIDDGRGMPVDIHPE---EGVPGVEL 124491 L E+IDNSVDEA+ K I ++N + V D+GRG+P + + E +PG Sbjct: 52 LIDEIIDNSVDEAIRTSFKFANKIDVQIKNNQVSVEDNGRGIPQGLVTDQTGEQIPGPVA 111 Query: 124492 ILTKLHAGGKFSNKNYQFSGGLHGVGISVVNALSTRVEVRVRRDG-NEYRMAFADGFKAS 124668 T AGG F + + + +GG++GVG S+ N ST + + DG NE + ++G + Sbjct: 112 AWTIPKAGGNFGDDSERKTGGMNGVGSSLTNIFST-LFTGITSDGENEITVNCSNGMENK 170 Query: 124669 ELEIVGSVGKRNTGTSVHFWPDARYFDSPRFSVARLKHVL---KAKAVLCPGLSVGFEDK 124839 S GK GT V F PD F+ S L L + AV+ P + F Sbjct: 171 SWSSKKSKGK---GTKVIFTPDFTSFEEHNLSQIYLDITLDRLQTLAVVYPDIKFTF--- 224 Query: 124840 GSGEKVEWHYEDGLRSYLADAVGDFPRLPEEPFTGSFAASREAVEWALLWLPEGGEFRSE 125019 +G+KV+ G+F R ++ + + V A P+G FR Sbjct: 225 -NGKKVD---------------GNFKRFAKQFGEDNIIQENDKVSIAFTTSPDG--FRHL 266 Query: 125020 SYVNLIPTDQGGTHVNGLRQGLLDAMREFCEFRSLLP------RGVKLAPEDVWERIAFV 125181 +YVN I T GG HV + M + CE LLP +G+++ V E + + Sbjct: 267 TYVNNIHTKNGGHHVECV-------MDDICEH--LLPGIKKKYKGIEVTKARVKECLTML 317 Query: 125182 LSMK-LAEPQFSGQTKERLSSREAAA---FVSGVVKDAFSLWLNEHPELGLQLAELAISN 125349 + ++ ++ +F QTKERL+S K A +L NE L + + E A++ Sbjct: 318 MFIRDMSNMRFDSQTKERLTSTYGDIRNHIQLDAKKIAQALLKNE--ALIMPIVEAALAR 375 Query: 125350 AGRRLKAGRKVERKKITQGPALPGKLADCAGQDPLRAELFLVEGDSAGGSAKQARDKEFQ 125529 KA KK T+ A+ G+D LFL EGDSA G RD+E Sbjct: 376 KLAAEKAAETKAAKKATKAKVHKHIKANQCGKDA-DTTLFLTEGDSAIGYLIDVRDRELH 434 Query: 125530 AIMPLRGKILNTWEVDGGEVLASQEVHDIAVAIGIDPGSADLSQLRYGKICILADADSDG 125709 PLRGK++N+W + +++ ++E+ DI G+ G Y I I+ DAD DG Sbjct: 435 GGFPLRGKVMNSWGMSYADMMKNKELFDICAITGLILGE-KAENTNYRNIAIMTDADHDG 493 Query: 125710 LHIATLLCALFVRHFRPLVEAGHVHVAMPPLYRIDLGKEIHYALDEAERDGILERLTAEK 125889 L F ++ L E G + P+ +GK + AE + + L Sbjct: 494 LGSIYPALLAFFSNWPELFEQGRIRFVKTPVIIAQIGKTQKWFYTVAEYEEAKDTLP--- 550 Query: 125890 KRGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTLDDFDGTREVMDMLLAKKRAGDR 126069 K + KGLG + + R+ +P +V+L + +E+ +ML+ + R Sbjct: 551 ---KHSIRYIKGLGSLEKSEYRKMIQNP-VYDVVKLP----ENWKELFEMLMGDD-SELR 601 Query: 126070 KSWL 126081 K W+ Sbjct: 602 KEWM 605 >ref|NP_943883.1|topoisomerase II large subunit Length = 613 Score = 154 bits (388), Expect = 3e-36 Identities = 178/618 (28%), Positives = 270/618 (43%), Gaps = 33/618 (5%) Frame = +1 Query: 124327 LAQEVIDNSVDEALAG---HAKSVQVILHEDNSLEVIDDGRGMP--VDIHPEEGVPGVEL 124491 + EVIDNSVDEA+ HA ++V++ +DN + V D+GRG+P + + PE GVE+ Sbjct: 50 ITDEVIDNSVDEAIRTNFEHANQIEVVI-KDNQVSVKDNGRGLPQGMVVTPE----GVEV 104 Query: 124492 IL-----TKLHAGGKFSNKNYQFSGGLHGVGISVVNALSTRVEVRVRRDGNEYRMAFADG 124656 L T+ AG FS G +GVG ++ N S N + + Sbjct: 105 PLPLAAWTRARAGSNFSADRKTI--GKNGVGSALTNFFSDSFVGETGNGTNTVTVRCTNN 162 Query: 124657 FKASELEIVGSVGKRNTGTSVHFWPDARYFDSPRFSVARL----KHVLKAKAVLCPGLSV 124824 A E+ GK GT+V F PD RF V +L + V++++ + L+V Sbjct: 163 --ADEVSYTTKAGKFK-GTNVTFVPDFT-----RFGVFQLDEDFEQVIQSRLLT---LAV 211 Query: 124825 GFED---KGSGEKVEWHYEDGLRSYLADAVGDFPRLPEEPFTGSFAASREAVEWALLWLP 124995 F K +G+KVE G S A GD ++ + FA S E Sbjct: 212 NFPPITFKYNGKKVE-----GKFSKFAAQFGDVVSHNDDNVSLFFATSEE---------- 256 Query: 124996 EGGEFRSESYVNLIPTDQGGTHVNGLRQGLLDAMREFCEFRSLLPRGVKLAPEDVWERIA 125175 +R S+VN + T QGG HV G+ L D E ++ R K+ + Sbjct: 257 ----YRQLSFVNGVHTKQGGNHVYGVLDSLSD------ELIPMIKRQHKIEINKARIKEC 306 Query: 125176 FVLSM---KLAEPQFSGQTKERLSSREAA----------AFVSGVVKDAFSLWLNEHPEL 125316 ++ + L P++ GQTKERLSS A A ++K + P + Sbjct: 307 LLIGLFIRNLVAPKYDGQTKERLSSPWAQIRDHMNLDYKALARKILKTPEVI----DPII 362 Query: 125317 GLQLAELAISNAGRRLKAGRKVERKKITQGPALPGKLADCAGQDPLRAELFLVEGDSAGG 125496 LA+ ++ KA +K ++ + + A AG L+ LFL EGDSA G Sbjct: 363 ASALAKKEAADKAAATKAQKKAKKANVAKHVA-------AAGLGRLKTMLFLAEGDSAIG 415 Query: 125497 SAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVAIGIDPGSADLSQLRYGK 125676 + R++E Q PLRGK+LN W + EVL ++E+ D+ + ++ S + Y Sbjct: 416 PFTRFRNEETQGSYPLRGKMLNVWNLPDHEVLKNKEIADLLGILNVELRSKEAP--AYTD 473 Query: 125677 ICILADADSDGL-HIATLLCALFVRHFRPLVEAGHVHVAMPPLYRIDLGKEIHYALDEAE 125853 I I+ DAD DG IA L A F + + E G +H+ P Y GK+ ++ E Sbjct: 474 IAIMTDADQDGKGSIAMLAIAFFYKFWPHWFEQGRIHIVRTPEYISTNGKKTDWSYSRDE 533 Query: 125854 RDGILERLTAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLV--QLTLDDFDGTRE 126027 ++K GK KGLG + ++ + LV Q+ +D D T E Sbjct: 534 -------FRSKKFDGKWTHRHIKGLGSLT-VEGDDCEYKQCIENLVLEQVVID--DQTPE 583 Query: 126028 VMDMLLAKKRAGDRKSWL 126081 +++ML RK WL Sbjct: 584 LLEMLFGDDE-HKRKQWL 600 >ref|NP_932362.1|topoisomerase II large subunit Length = 607 Score = 145 bits (367), Expect = 8e-34 Identities = 171/656 (26%), Positives = 281/656 (42%), Gaps = 43/656 (6%) Frame = +1 Query: 124243 ADAIEVLSGLDPVRKRPGMYTDTT--RPNH------------------LAQEVIDNSVDE 124362 +D +VL+ + V RP MY + P+ + E+IDNSVDE Sbjct: 2 SDEFKVLTPREHVILRPNMYVGSVAYEPHERFLFGKFQSVSYVPGLVKIIDEIIDNSVDE 61 Query: 124363 ALAGHAKSVQVILHE----DNSLEVIDDGRGMPVDI--HPEEGVPGVELILTKLHAGGKF 124524 + K I + S+ V+D+GRG+P + P+ +P T+ AG F Sbjct: 62 GIRTDFKFANKIDIRFDLLEGSVTVVDNGRGIPQSMVETPDGEMPKPVAAWTQTMAGSNF 121 Query: 124525 SNKNYQFSGGLHGVGISVVNALSTRVEVRVRRDGNEYRMAFADGFKASELEIVGSVGKRN 124704 + N + S G++GVG S+ N S + N + ++G AS ++ GK Sbjct: 122 DDTN-RVSMGMNGVGSSLTNFFSKKFIGETCDGKNFLTVTCSEG--ASNIDWETKPGKIK 178 Query: 124705 TGTSVHFWPDARYFDSPRFS---VARLKHVLKAKAVLCPGLSVGFEDKGSGEKVEWHYED 124875 GTSV+F PD ++F+ + + + A +V+ P + +G+ + D Sbjct: 179 -GTSVYFIPDEKHFEGRTIDQQIIDIISDRITALSVV