Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig4

Genome size:  2019
Host's GC content:  63.69
Predicted Codon Position GC:  	1st:  66.07	 2nd:  43.90	 3rd:  75.47

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig5

Genome size:  2227
Host's GC content:  57.70
Predicted Codon Position GC:  	1st:  62.39	 2nd:  42.28	 3rd:  65.33

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig6

Genome size:  2288
Host's GC content:  63.37
Predicted Codon Position GC:  	1st:  65.88	 2nd:  43.81	 3rd:  74.93

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig7

Genome size:  3760
Host's GC content:  63.91
Predicted Codon Position GC:  	1st:  66.20	 2nd:  43.96	 3rd:  75.83

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig8

Genome size:  8720
Host's GC content:  62.39
Predicted Codon Position GC:  	1st:  65.27	 2nd:  43.54	 3rd:  73.26

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig9

Genome size:  7722
Host's GC content:  66.23
Predicted Codon Position GC:  	1st:  67.63	 2nd:  44.58	 3rd:  79.76

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig10

Genome size:  16433
Host's GC content:  64.22
Predicted Codon Position GC:  	1st:  66.39	 2nd:  44.04	 3rd:  76.36

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig11

Genome size:  29084
Host's GC content:  66.08
Predicted Codon Position GC:  	1st:  67.54	 2nd:  44.54	 3rd:  79.51

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig12

Genome size:  26663
Host's GC content:  65.43
Predicted Codon Position GC:  	1st:  67.14	 2nd:  44.37	 3rd:  78.41

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig13

Genome size:  34257
Host's GC content:  64.73
Predicted Codon Position GC:  	1st:  66.71	 2nd:  44.18	 3rd:  77.23

 >PredictedProphage1 
 Length:   15411 
 Number of hits =   5 
 GC	Coding	First	Second	Third
 64.81 	 63.63 	 67.41 	 53.17 	 70.32 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 9926	10165	-1	ref|NP_817716.1|gp38 	35.4bits(80)	0.37
 14129	14704	1	ref|NP_445672.1|putative helicase	80.1bits(196)	1e-14
 15904	16440	1	ref|NP_958267.1|hypothetical protein	35.4bits(80)	0.37
 19060	19773	1	ref|NP_720276.1|GtrB 	47.0bits(110)	1e-04
 25130	25336	1	ref|NP_958267.1|hypothetical protein	36.6bits(83)	0.17
 


Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig14

Genome size:  29086
Host's GC content:  65.49
Predicted Codon Position GC:  	1st:  67.18	 2nd:  44.38	 3rd:  78.51

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig15

Genome size:  29273
Host's GC content:  64.24
Predicted Codon Position GC:  	1st:  66.41	 2nd:  44.05	 3rd:  76.40

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig16

Genome size:  36019
Host's GC content:  65.27
Predicted Codon Position GC:  	1st:  67.04	 2nd:  44.32	 3rd:  78.14

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig17

Genome size:  33765
Host's GC content:  66.27
Predicted Codon Position GC:  	1st:  67.66	 2nd:  44.59	 3rd:  79.83

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig18

Genome size:  39654
Host's GC content:  66.69
Predicted Codon Position GC:  	1st:  67.91	 2nd:  44.71	 3rd:  80.53

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig19

Genome size:  48931
Host's GC content:  65.23
Predicted Codon Position GC:  	1st:  67.02	 2nd:  44.31	 3rd:  78.07

 >PredictedProphage1 
 Length:   9824 
 Number of hits =   5 
 GC	Coding	First	Second	Third
 64.13 	 61.58 	 57.44 	 36.80 	 90.52 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 2589	2993	-1	ref|NP_945089.1|gp58 	37.0bits(84)	0.18
 8431	8622	1	ref|NP_817487.1|gp37 	53.1bits(126)	2e-06
 8794	9186	1	ref|NP_046712.1|similar to Bacillus subtilis NrdI (YmaA)	67.4bits(163)	1e-10
 9291	11360	1	ref|YP_024510.1|putative ribonucleotide reductase large subunit	465bits(1197)	1e-130
 11519	12412	1	ref|NP_046714.1|unknown 	261bits(668)	3e-69
 


Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig20

Genome size:  48640
Host's GC content:  65.81
Predicted Codon Position GC:  	1st:  67.38	 2nd:  44.47	 3rd:  79.06

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig21

Genome size:  39290
Host's GC content:  66.27
Predicted Codon Position GC:  	1st:  67.65	 2nd:  44.59	 3rd:  79.82

 >PredictedProphage1 
 Length:   10196 
 Number of hits =   6 
 GC	Coding	First	Second	Third
 67.64 	 68.32 	 66.87 	 70.03 	 68.07 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 5539	5781	1	ref|NP_944342.1|gp33 	36.2bits(82)	0.25
 8391	8552	1	ref|NP_958267.1|hypothetical protein	37.7bits(86)	0.086
 9710	10078	-1	ref|NP_542342.1|unknown 	36.2bits(82)	0.25
 10963	11268	-1	ref|NP_612899.1|hypothetical protein	37.0bits(84)	0.15
 14145	14510	-1	ref|NP_542342.1|unknown 	38.1bits(87)	0.066
 15189	15734	-1	ref|NP_818239.1|gp188 	47.4bits(111)	1e-04
 


Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig22

Genome size:  29457
Host's GC content:  65.14
Predicted Codon Position GC:  	1st:  66.96	 2nd:  44.29	 3rd:  77.91

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig23

Genome size:  36076
Host's GC content:  66.73
Predicted Codon Position GC:  	1st:  67.94	 2nd:  44.72	 3rd:  80.61

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig24

Genome size:  55311
Host's GC content:  62.89
Predicted Codon Position GC:  	1st:  65.58	 2nd:  43.68	 3rd:  74.11

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig25

Genome size:  59682
Host's GC content:  62.43
Predicted Codon Position GC:  	1st:  65.29	 2nd:  43.55	 3rd:  73.32

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig26

Genome size:  35864
Host's GC content:  63.47
Predicted Codon Position GC:  	1st:  65.94	 2nd:  43.84	 3rd:  75.10

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig27

Genome size:  40571
Host's GC content:  66.73
Predicted Codon Position GC:  	1st:  67.94	 2nd:  44.72	 3rd:  80.61

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig28

Genome size:  50675
Host's GC content:  60.63
Predicted Codon Position GC:  	1st:  64.19	 2nd:  43.07	 3rd:  70.29

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig29

Genome size:  65227
Host's GC content:  64.92
Predicted Codon Position GC:  	1st:  66.83	 2nd:  44.23	 3rd:  77.55

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig30

Genome size:  97877
Host's GC content:  65.68
Predicted Codon Position GC:  	1st:  67.29	 2nd:  44.43	 3rd:  78.83

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig31

Genome size:  85713
Host's GC content:  62.91
Predicted Codon Position GC:  	1st:  65.59	 2nd:  43.69	 3rd:  74.15

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig32

Genome size:  97857
Host's GC content:  65.10
Predicted Codon Position GC:  	1st:  66.94	 2nd:  44.28	 3rd:  77.86

 >PredictedProphage1 
 Length:   17285 
 Number of hits =   5 
 GC	Coding	First	Second	Third
 64.63 	 63.90 	 66.50 	 48.27 	 76.93 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 29418	29627	1	ref|YP_164052.1|hypothetical protein	37.4bits(85)	0.26
 33059	33241	-1	ref|NP_542287.1|unknown 	37.7bits(86)	0.20
 33565	34302	-1	ref|NP_958267.1|hypothetical protein	38.1bits(87)	0.15
 38713	38922	1	ref|NP_039696.1|predicted 21.3kd protein	37.4bits(85)	0.26
 43961	46702	-1	ref|NP_818250.1|gp199 	352bits(902)	5e-96
 


Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig33

Genome size:  54114
Host's GC content:  62.12
Predicted Codon Position GC:  	1st:  65.10	 2nd:  43.47	 3rd:  72.80

 >PredictedProphage1 
 Length:   22353 
 Number of hits =   8 
 GC	Coding	First	Second	Third
 60.44 	 63.17 	 64.39 	 45.80 	 79.33 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 30325	30813	-1	ref|NP_817941.1|gp90 	72.8bits(177)	3e-12
 31183	31632	-1	ref|NP_817941.1|gp90 	110bits(274)	2e-23
 34131	34466	-1	ref|NP_569809.1|hypothetical protein	42.4bits(98)	0.005
 38727	39419	-1	ref|NP_046670.1|similar to Escherichia coli YedG	178bits(451)	5e-44
 39990	41225	1	ref|YP_164394.1|DEAD box family helicase	52.0bits(123)	6e-06
 41961	42167	1	ref|NP_542568.1|putative methyltransferase-endonuclease	45.1bits(105)	7e-04
 46541	47065	-1	ref|NP_050655.1|Gin 	99.8bits(247)	2e-20
 52435	52677	-1	ref|NP_944342.1|gp33 	36.2bits(82)	0.34
 


Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig34

Genome size:  104653
Host's GC content:  64.30
Predicted Codon Position GC:  	1st:  66.44	 2nd:  44.06	 3rd:  76.49

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig35

Genome size:  130711
Host's GC content:  66.00
Predicted Codon Position GC:  	1st:  67.49	 2nd:  44.52	 3rd:  79.37

 >PredictedProphage1 
 Length:   13072 
 Number of hits =   7 
 GC	Coding	First	Second	Third
 66.07 	 66.15 	 75.17 	 53.55 	 69.73 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 98447	99079	-1	ref|NP_046569.1|IMPB 	61.2bits(147)	2e-08
 102358	102732	1	ref|NP_945089.1|gp58 	39.7bits(91)	0.069
 103259	103546	1	ref|YP_164732.1|orf97 	37.0bits(84)	0.45
 105310	105684	-1	ref|NP_047971.2|gp26 	43.9bits(102)	0.004
 107767	108486	1	ref|NP_958267.1|hypothetical protein	43.1bits(100)	0.006
 108550	108729	-1	ref|NP_817692.1|gp15 	38.5bits(88)	0.15
 111384	111518	1	ref|NP_945089.1|gp58 	37.0bits(84)	0.45
 


Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig36

Genome size:  86459
Host's GC content:  66.53
Predicted Codon Position GC:  	1st:  67.81	 2nd:  44.66	 3rd:  80.26

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig37

Genome size:  79943
Host's GC content:  66.23
Predicted Codon Position GC:  	1st:  67.63	 2nd:  44.58	 3rd:  79.76

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig38

Genome size:  108901
Host's GC content:  66.86
Predicted Codon Position GC:  	1st:  68.02	 2nd:  44.75	 3rd:  80.82

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig39

Genome size:  115917
Host's GC content:  66.07
Predicted Codon Position GC:  	1st:  67.53	 2nd:  44.54	 3rd:  79.49

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig40

Genome size:  159318
Host's GC content:  66.05
Predicted Codon Position GC:  	1st:  67.52	 2nd:  44.53	 3rd:  79.46

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig41

Genome size:  299250
Host's GC content:  65.05
Predicted Codon Position GC:  	1st:  66.91	 2nd:  44.26	 3rd:  77.77

 >PredictedProphage1 
 Length:   23368 
 Number of hits =   7 
 GC	Coding	First	Second	Third
 66.54 	 65.60 	 67.40 	 49.50 	 79.91 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 150960	152093	-1	ref|NP_945090.1|gp59 	195bits(496)	2e-48
 156925	157212	-1	ref|YP_164705.1|orf70 	52.0bits(123)	3e-05
 159328	159876	-1	ref|YP_195153.1|recombination protein gp46	52.0bits(123)	3e-05
 160365	160685	-1	ref|YP_164710.1|orf75 	47.8bits(112)	5e-04
 164648	165166	-1	ref|NP_835521.1|probable ATP-dependent helicase	78.2bits(191)	4e-13
 170653	171261	1	ref|NP_958267.1|hypothetical protein	40.8bits(94)	0.067
 173239	174327	-1	ref|NP_817811.1|gp50 	48.1bits(113)	4e-04
 
 >PredictedProphage2 
 Length:   18008 
 Number of hits =   5 
 GC	Coding	First	Second	Third
 64.75 	 63.44 	 65.62 	 48.63 	 76.08 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 241365	242363	1	ref|NP_818228.1|gp169 	142bits(357)	2e-32
 244625	245131	-1	ref|NP_835731.1|similar to RNA polymerase ECF-type sigma factor	49.3bits(116)	2e-04
 250177	250434	1	ref|NP_958267.1|hypothetical protein	38.1bits(87)	0.43
 255643	256044	-1	ref|NP_943827.1|gp49 	67.8bits(164)	5e-10
 259244	259372	-1	ref|NP_818251.1|gp200 	48.1bits(113)	4e-04
 
 >PredictedProphage3 
 Length:   16637 
 Number of hits =   5 
 GC	Coding	First	Second	Third
 62.17 	 60.37 	 60.29 	 47.10 	 73.71 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 279102	279419	-1	ref|NP_958295.1|hypothetical protein	39.3bits(90)	0.20
 282214	283074	-1	ref|NP_061524.1|Orf28 	97.1bits(240)	8e-19
 287357	288307	-1	ref|NP_061524.1|Orf28 	59.3bits(142)	2e-07
 292175	293212	-1	ref|NP_835711.1|similar to UDP-galactopyranose mutase	88.2bits(217)	4e-16
 295130	295738	1	ref|NP_818503.1|gp203 	65.1bits(157)	3e-09
 


Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig42

Genome size:  231185
Host's GC content:  64.81
Predicted Codon Position GC:  	1st:  66.76	 2nd:  44.20	 3rd:  77.35

 >PredictedProphage1 
 Length:   14436 
 Number of hits =   6 
 GC	Coding	First	Second	Third
 63.20 	 64.51 	 72.92 	 57.11 	 63.48 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 84690	85463	-1	ref|YP_164321.1|hypothetical protein	38.5bits(88)	0.26
 86807	87088	1	ref|YP_164323.1|hypothetical protein	41.6bits(96)	0.031
 90319	90681	1	ref|NP_852574.1|Collagen triple helix repeat protein	42.7bits(99)	0.014
 95808	96263	-1	ref|NP_817502.1|gp53 	58.9bits(141)	2e-07
 97885	98307	1	ref|NP_665964.1|putative plasmid partitioning protein Soj	47.8bits(112)	4e-04
 98787	99125	1	ref|NP_818167.1|gp94 	38.5bits(88)	0.26
 
 >PredictedProphage2 
 Length:   15032 
 Number of hits =   6 
 GC	Coding	First	Second	Third
 61.16 	 64.29 	 67.96 	 46.92 	 78.01 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 164972	165484	-1	ref|NP_818206.1|gp133 	57.8bits(138)	4e-07
 169696	170082	1	ref|YP_024966.1|putative primase	38.5bits(88)	0.26
 171973	172461	1	ref|NP_665964.1|putative plasmid partitioning protein Soj	70.5bits(171)	6e-11
 173456	178450	1	ref|NP_944303.1|conserved phage mega protein	760bits(1962)	0.0
 179438	179758	-1	ref|NP_050655.1|Gin 	50.8bits(120)	5e-05
 179752	180003	-1	ref|NP_050655.1|Gin 	69.7bits(169)	1e-10
 


Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig43

Genome size:  429973
Host's GC content:  65.17
Predicted Codon Position GC:  	1st:  66.98	 2nd:  44.30	 3rd:  77.96

 >PredictedProphage1 
 Length:   15104 
 Number of hits =   5 
 GC	Coding	First	Second	Third
 66.09 	 66.54 	 75.03 	 58.87 	 65.70 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 70998	71600	-1	ref|NP_958267.1|hypothetical protein	38.5bits(88)	0.47
 74172	74438	-1	ref|NP_817661.1|gp72 	44.3bits(103)	0.009
 77943	78374	-1	ref|NP_612899.1|hypothetical protein	42.0bits(97)	0.042
 81626	82303	1	ref|NP_958252.1|hypothetical protein	142bits(358)	2e-32
 85799	86101	-1	ref|NP_818239.1|gp188 	46.2bits(108)	0.002
 


Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig44

Genome size:  349314
Host's GC content:  65.07
Predicted Codon Position GC:  	1st:  66.92	 2nd:  44.27	 3rd:  77.80

 >PredictedProphage1 
 Length:   18578 
 Number of hits =   7 
 GC	Coding	First	Second	Third
 62.66 	 60.82 	 61.87 	 48.39 	 72.21 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 46493	47767	1	ref|NP_817947.1|gp96 	209bits(533)	1e-52
 49329	49718	1	ref|NP_049688.1|NrdG anaerobic NTP reductase, small subunit	60.8bits(146)	7e-08
 50004	50309	1	ref|NP_663636.1|unknown 	92.0bits(227)	3e-17
 52855	52971	1	ref|NP_047953.1|gp7 	45.1bits(105)	0.004
 57117	57290	-1	ref|NP_945090.1|gp59 	39.3bits(90)	0.23
 59792	60886	-1	ref|NP_818312.1|gp11 	208bits(529)	3e-52
 64510	65070	-1	ref|NP_612994.1|hypothetical protein	39.3bits(90)	0.23
 
 >PredictedProphage2 
 Length:   24179 
 Number of hits =   9 
 GC	Coding	First	Second	Third
 64.63 	 65.32 	 66.04 	 47.47 	 82.46 
 Left	Right	Strand	Best Blast Hit	Score	Evalue
 282507	282713	-1	ref|NP_047953.1|gp7 	72.4bits(176)	2e-11
 284087	284341	-1	ref|NP_818206.1|gp133 	52.8bits(125)	2e-05
 285139	285498	-1	ref|NP_108727.1|minor structural protein 3	80.9bits(198)	7e-14
 287799	288251	1	ref|NP_817918.1|gp67 	39.3bits(90)	0.23
 290646	290822	-1	ref|NP_076827.1|Csp 	56.6bits(135)	1e-06
 294393	295400	1	ref|NP_445687.1|putative helicase	77.4bits(189)	7e-13
 300113	300475	-1	ref|YP_006919.1|putative RNaseH ribonuclease	79.7bits(195)	2e-13
 305370	305570	-1	ref|NP_076827.1|Csp 	86.3bits(212)	2e-15
 306512	306685	-1	ref|NP_817719.1|gp42 	52.8bits(125)	2e-05
 


Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig45

Genome size:  445935
Host's GC content:  65.89
Predicted Codon Position GC:  	1st:  67.42	 2nd:  44.49	 3rd:  79.19

 

Prophage Finder Output

Genome file:  temp/arthrobacterlc.txt
Sequence Header:  >Contig46

Genome size:  327131
Host's GC content:  65.80
Predicted Codon Position GC:  	1st:  67.37	 2nd:  44.47	 3rd:  79.03