BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig4 (2019 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_918967.1|hypothetical novel protein 37 0.010 ref|NP_839887.1|gpA 34 0.067 ref|NP_859247.1|hypothetical protein 32 0.26 ref|NP_612881.1|hypothetical protein 32 0.26 ref|NP_859080.1|hypothetical protein 32 0.26 ref|NP_958711.1|Bbp42 32 0.26 ref|NP_996604.1|DNA polymerase 32 0.26 ref|NP_996652.1|DNA polymerase 32 0.26 ref|NP_050550.1|hypothetical protein 32 0.26 ref|NP_049512.1|putative portal protein 32 0.26 ref|NP_878237.1|gpA 32 0.33 >ref|NP_918967.1|hypothetical novel protein Length = 244 Score = 36.6 bits (83), Expect = 0.010 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Frame = -2 Query: 2012 PGLKLRPTACPCRGV*GSARIRAQWT--RRWPPEGQRCPWLPP 1890 P + P PC G R +W+ RRWPP G C W PP Sbjct: 133 PNRAVFPAVRPCEG-----RPAGEWSTARRWPPTGWPCEWFPP 170 >ref|NP_839887.1|gpA Length = 761 Score = 33.9 bits (76), Expect = 0.067 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Frame = +2 Query: 1127 TPEPERLLQPVPEGQRITVMLAAFEGWNDAGEAASDALRYLNKLWGGKKVASIDAD-EYY 1303 TP + V +G+ TV L GWND DA RYL ++W + A D D + Y Sbjct: 328 TPSKYHPTRQVGKGESKTVQLN--HGWNDEAFNPKDAQRYLCRIWSLMRTAFKDNDLQVY 385 Query: 1304 DFQFTRP 1324 + P Sbjct: 386 GLRVVEP 392 >ref|NP_859247.1|hypothetical protein Length = 714 Score = 32.0 bits (71), Expect = 0.26 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 7/148 (4%) Frame = +2 Query: 1511 ILVGALLADVPHSRPIPVSTSTDDSALRERMNLEASQYEGPV--GIVGVLSEVALLAGLP 1684 +L+ LL D+ R V + DD R+ + L A G + I + + +AL Sbjct: 489 LLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAPVQQ 548 Query: 1685 TVSLWAAVPHY---VAQAPSPKAQLALLHKIEELLQVPLDTH--ELAEEADAWERGVDEL 1849 T + A + V Q P+ Q +L LL VP E A + DE+ Sbjct: 549 TPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDVPQKQEFVERIRAALGTPKSPDEM 608 Query: 1850 ATEDPEIAAYVRQLEEAKDTADLPEASG 1933 E+ E+AA + L++ + + E +G Sbjct: 609 TPEEQEVAAQQQALQQQQAELQMREMAG 636 >ref|NP_612881.1|hypothetical protein Length = 714 Score = 32.0 bits (71), Expect = 0.26 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 7/148 (4%) Frame = +2 Query: 1511 ILVGALLADVPHSRPIPVSTSTDDSALRERMNLEASQYEGPV--GIVGVLSEVALLAGLP 1684 +L+ LL D+ R V + DD R+ + L A G + I + + +AL Sbjct: 489 LLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAPVQQ 548 Query: 1685 TVSLWAAVPHY---VAQAPSPKAQLALLHKIEELLQVPLDTH--ELAEEADAWERGVDEL 1849 T + A + V Q P+ Q +L LL VP E A + DE+ Sbjct: 549 TPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDVPQKQEFVERIRAALGTPKSPDEM 608 Query: 1850 ATEDPEIAAYVRQLEEAKDTADLPEASG 1933 E+ E+AA + L++ + + E +G Sbjct: 609 TPEEQEVAAQQQALQQQQAELQMREMAG 636 >ref|NP_859080.1|hypothetical protein Length = 714 Score = 32.0 bits (71), Expect = 0.26 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 7/148 (4%) Frame = +2 Query: 1511 ILVGALLADVPHSRPIPVSTSTDDSALRERMNLEASQYEGPV--GIVGVLSEVALLAGLP 1684 +L+ LL D+ R V + DD R+ + L A G + I + + +AL Sbjct: 489 LLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAPVQQ 548 Query: 1685 TVSLWAAVPHY---VAQAPSPKAQLALLHKIEELLQVPLDTH--ELAEEADAWERGVDEL 1849 T + A + V Q P+ Q +L LL VP E A + DE+ Sbjct: 549 TPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDVPQKQEFVERIRAALGTPKSPDEM 608 Query: 1850 ATEDPEIAAYVRQLEEAKDTADLPEASG 1933 E+ E+AA + L++ + + E +G Sbjct: 609 TPEEQEVAAQQQALQQQQAELQMREMAG 636 >ref|NP_958711.1|Bbp42 Length = 688 Score = 32.0 bits (71), Expect = 0.26 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = -2 Query: 317 DDPARATWHSLEGRTVADLQQLVARRSEFAVGDIGLEDAAF 195 D A A W S+ +A+ +Q +A R+E +GD GL+ F Sbjct: 471 DAMADAAWPSIPADIIAEAEQFLAWRTEQRLGDFGLKPKTF 511 >ref|NP_996604.1|DNA polymerase Length = 688 Score = 32.0 bits (71), Expect = 0.26 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = -2 Query: 317 DDPARATWHSLEGRTVADLQQLVARRSEFAVGDIGLEDAAF 195 D A A W S+ +A+ +Q +A R+E +GD GL+ F Sbjct: 471 DAMADAAWPSIPADIIAEAEQFLAWRTEQRLGDFGLKPKTF 511 >ref|NP_996652.1|DNA polymerase Length = 688 Score = 32.0 bits (71), Expect = 0.26 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = -2 Query: 317 DDPARATWHSLEGRTVADLQQLVARRSEFAVGDIGLEDAAF 195 D A A W S+ +A+ +Q +A R+E +GD GL+ F Sbjct: 471 DAMADAAWPSIPADIIAEAEQFLAWRTEQRLGDFGLKPKTF 511 >ref|NP_050550.1|hypothetical protein Length = 714 Score = 32.0 bits (71), Expect = 0.26 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 7/148 (4%) Frame = +2 Query: 1511 ILVGALLADVPHSRPIPVSTSTDDSALRERMNLEASQYEGPV--GIVGVLSEVALLAGLP 1684 +L+ LL D+ R V + DD R+ + L A G + I + + +AL Sbjct: 489 LLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAPVQQ 548 Query: 1685 TVSLWAAVPHY---VAQAPSPKAQLALLHKIEELLQVPLDTH--ELAEEADAWERGVDEL 1849 T + A + V Q P+ Q +L LL VP E A + DE+ Sbjct: 549 TPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDVPQKQEFVERIRAALGTPKSPDEM 608 Query: 1850 ATEDPEIAAYVRQLEEAKDTADLPEASG 1933 E+ E+AA + L++ + + E +G Sbjct: 609 TPEEQEVAAQQQALQQQQAELQMREMAG 636 >ref|NP_049512.1|putative portal protein Length = 714 Score = 32.0 bits (71), Expect = 0.26 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 7/148 (4%) Frame = +2 Query: 1511 ILVGALLADVPHSRPIPVSTSTDDSALRERMNLEASQYEGPV--GIVGVLSEVALLAGLP 1684 +L+ LL D+ R V + DD R+ + L A G + I + + +AL Sbjct: 489 LLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAPVQQ 548 Query: 1685 TVSLWAAVPHY---VAQAPSPKAQLALLHKIEELLQVPLDTH--ELAEEADAWERGVDEL 1849 T + A + V Q P+ Q +L LL VP E A + DE+ Sbjct: 549 TPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDVPQKQEFVERIRAALGTPKSPDEM 608 Query: 1850 ATEDPEIAAYVRQLEEAKDTADLPEASG 1933 E+ E+AA + L++ + + E +G Sbjct: 609 TPEEQEVAAQQQALQQQQAELQMREMAG 636 >ref|NP_878237.1|gpA Length = 761 Score = 31.6 bits (70), Expect = 0.33 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = +2 Query: 1157 VPEGQRITVMLAAFEGWNDAGEAASDALRYLNKLWGGKKVASIDAD-EYYDFQFTRP 1324 V +G+ TV L GWND DA RYL ++W + A D D + Y + P Sbjct: 338 VRKGESKTVQLN--HGWNDEAFNPKDAQRYLCRIWSLMRTAFKDNDLQAYGLRVVEP 392 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,840,018 Number of Sequences: 14420 Number of extensions: 238611 Number of successful extensions: 907 Number of sequences better than 0.5: 11 Number of HSP's better than 0.5 without gapping: 790 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 907 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 961781018 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig5 (2227 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,817,085 Number of Sequences: 14420 Number of extensions: 283967 Number of successful extensions: 834 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 765 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 834 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1065616406 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig6 (2288 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542296.1|unknown 33 0.10 >ref|NP_542296.1|unknown Length = 111 Score = 33.5 bits (75), Expect = 0.10 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Frame = +1 Query: 1966 PMTPGTSRAAKPTFP---TLPGLPTWAPTGWSGPPSCP--RLRSVNCGT*PGPGPSSLRN 2130 P++P S A+ PT P T LP + P G P C R ++ C T P PG R Sbjct: 18 PLSPACSLASVPTRPGALTTTTLPAFRPIG---PRRCRARRASAITCSTIPSPGRPGPRR 74 Query: 2131 GPGKSSA 2151 P S++ Sbjct: 75 RPRHSAS 81 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,062,364 Number of Sequences: 14420 Number of extensions: 269920 Number of successful extensions: 925 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 601 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 924 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1100257187 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig7 (3760 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958295.1|hypothetical protein 34 0.13 >ref|NP_958295.1|hypothetical protein Length = 215 Score = 33.9 bits (76), Expect = 0.13 Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 5/78 (6%) Frame = -2 Query: 783 RPSAKPWCSTRKGWRRGSPAWSTKYSPVRPAWTAIPSSRS---WPRALTPGSPPTRCSPP 613 RPS +CS WR A P P +A P+S S PR+ P SPP R S P Sbjct: 2 RPSPTTFCSG--SWRSPGSA------PTAPHCSASPASCSDGPAPRSTRPPSPPCRPSRP 53 Query: 612 WRTLSIPRALS--PSAPL 565 T P A S P+ P+ Sbjct: 54 PCTAGTPTACSAGPAVPM 71 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,871,674 Number of Sequences: 14420 Number of extensions: 307172 Number of successful extensions: 1063 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 940 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1060 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1835438793 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig8 (8720 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,708,069 Number of Sequences: 14420 Number of extensions: 943444 Number of successful extensions: 3088 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 2298 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3084 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 4258426362 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig9 (7722 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_076698.1|repressor 43 4e-04 ref|NP_116527.1|cI repressor 42 0.001 ref|NP_108682.1|cI2009 42 0.001 ref|NP_695031.1|Repressor 41 0.002 ref|NP_996677.1|phage repressor 41 0.002 ref|NP_943752.1|putative protein 6 40 0.005 ref|NP_958267.1|hypothetical protein 39 0.011 ref|NP_599066.1|repressor 38 0.014 ref|NP_835522.1|similar to repressor 38 0.018 ref|NP_803311.1|cI-like repressor 38 0.018 ref|NP_510900.1|similar to phage phi PVL repressor 37 0.024 ref|NP_112053.1|repressor protein cI 37 0.031 ref|YP_164276.1|LexA-like protein 36 0.069 ref|NP_599074.1|unknown 35 0.12 ref|NP_543069.1|hypothetical protein 33 0.34 >ref|NP_076698.1|repressor Length = 278 Score = 43.1 bits (100), Expect = 4e-04 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 6/126 (4%) Frame = -2 Query: 527 DTAMVPLVGRIAAGGPILADQVVEDVMPLPRQLVGHG-ELFMLKVTGDSMIDAAICDGDW 351 D VP++GRIAAG P+ A + + P+P + + + L V G SM + I G + Sbjct: 150 DMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSM-EPKIPFGSY 208 Query: 350 VVVRRQSDAVNGDIVAALLDD--EATVKTFRQRDGHTWLLPQNTQYEPILGDHAN---IM 186 V++ D +G I A L D +AT+K L+ N +++ N ++ Sbjct: 209 VLIEAVPDVTDGTIGAVLFQDDCQATLKKVYHEIDCLRLVSINKEFKDQFATQDNPAAVI 268 Query: 185 GKVVSV 168 G+ V V Sbjct: 269 GQAVKV 274 >ref|NP_116527.1|cI repressor Length = 297 Score = 42.0 bits (97), Expect = 0.001 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 6/126 (4%) Frame = -2 Query: 527 DTAMVPLVGRIAAGGPILADQVVEDVMPLPRQLVGHG-ELFMLKVTGDSMIDAAICDGDW 351 D VP++GRIAAG P+ A + + P+P + + + L V G SM + I G + Sbjct: 169 DMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSM-EPKIPYGAY 227 Query: 350 VVVRRQSDAVNGDIVAALLDD--EATVKTFRQRDGHTWLLPQNTQYEPILGDHAN---IM 186 V++ D +G I A L D +AT+K L+ N +++ N ++ Sbjct: 228 VLIEAVPDVTDGTIGAVLFHDDCQATLKKVYHEIDCLRLVSINKEFKDQFATQDNPAAVI 287 Query: 185 GKVVSV 168 G+ V V Sbjct: 288 GQAVKV 293 >ref|NP_108682.1|cI2009 Length = 286 Score = 41.6 bits (96), Expect = 0.001 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 6/126 (4%) Frame = -2 Query: 527 DTAMVPLVGRIAAGGPILADQVVEDVMPLPRQLVGHG-ELFMLKVTGDSMIDAAICDGDW 351 D VP++GRIAAG P+ A + + P+P + + + L V G SM + I G + Sbjct: 158 DMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSM-EPKIPYGAY 216 Query: 350 VVVRRQSDAVNGDIVAALLDD--EATVKTFRQRDGHTWLLPQNTQYEPILGDHAN---IM 186 V++ D +G I A L D +AT+K L+ N +++ N ++ Sbjct: 217 VLIEAVPDVSDGTIGAVLFQDDCQATLKKVYHEIDCLRLVSINKEFKDQFATQDNPAAVI 276 Query: 185 GKVVSV 168 G+ V V Sbjct: 277 GQAVKV 282 >ref|NP_695031.1|Repressor Length = 278 Score = 41.2 bits (95), Expect = 0.002 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 6/126 (4%) Frame = -2 Query: 527 DTAMVPLVGRIAAGGPILADQVVEDVMPLPRQLVGHG-ELFMLKVTGDSMIDAAICDGDW 351 D VP++GRIAAG P+ A + + P+P + + + L V G SM + I G + Sbjct: 150 DMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSM-EPKIPYGAY 208 Query: 350 VVVRRQSDAVNGDIVAALLDD--EATVKTFRQRDGHTWLLPQNTQYEPILGDHAN---IM 186 V++ D +G I A L D +AT+K L+ N +++ N ++ Sbjct: 209 VLIEAVPDVSDGTIGAVLFHDDCQATLKKVYHEIDCLRLVSINKEFKDQFATQDNPAAVI 268 Query: 185 GKVVSV 168 G+ V V Sbjct: 269 GQAVKV 274 >ref|NP_996677.1|phage repressor Length = 286 Score = 41.2 bits (95), Expect = 0.002 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 6/126 (4%) Frame = -2 Query: 527 DTAMVPLVGRIAAGGPILADQVVEDVMPLPRQLVGHG-ELFMLKVTGDSMIDAAICDGDW 351 D VP++GRIAAG P+ A + + P+P + + + L V G SM + I G + Sbjct: 158 DMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSM-EPKIPYGAY 216 Query: 350 VVVRRQSDAVNGDIVAALLDD--EATVKTFRQRDGHTWLLPQNTQYEPILGDHAN---IM 186 V++ D +G I A L D +AT+K L+ N +++ N ++ Sbjct: 217 VLIEAVPDVSDGTIGAVLFHDDCQATLKKVYHEIDCLRLVSINKEFKDQFATQDNPAAVI 276 Query: 185 GKVVSV 168 G+ V V Sbjct: 277 GQAVKV 282 >ref|NP_943752.1|putative protein 6 Length = 66 Score = 39.7 bits (91), Expect = 0.005 Identities = 23/66 (34%), Positives = 38/66 (57%) Frame = -2 Query: 833 LTVRQKKILETIQRSVNDNGYPPSMREIGDTVGLASLSSVTHQLSQLEKLGYLRRDPKRP 654 LT R++ LE I + + G+ PS+R++ + S + L QLE G +RR +RP Sbjct: 2 LTPREQDTLECISGYMEEFGFAPSVRDMASRM-YVSHKTAHRYLMQLESKGRIRRVHQRP 60 Query: 653 RAMEVL 636 RA+++L Sbjct: 61 RAIQLL 66 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 38.5 bits (88), Expect = 0.011 Identities = 53/183 (28%), Positives = 63/183 (34%), Gaps = 13/183 (7%) Frame = +1 Query: 1849 HPHLNC*SD*PARAPEPTSP-PDQPAWPHPVWCAAAGRSHPAQCQRKHPWRSGRC---PR 2016 HPHL PAR P P PD P P AA R HP + + R+ C P Sbjct: 38 HPHLG-----PARDRSPDHPEPDHPCRRAPSRPAAGPRRHPPVARTRPRTRAPECAPDPG 92 Query: 2017 GHFRGRDRGCCGAEPLSGP*VHRTPGATGRVPWPRPGCGEHLG----RQRIQRSAAADSA 2184 GC A P + P R P G HL R R + A Sbjct: 93 PAVHPAAPGCAPAAPAAP---EYAPALRPRAPECDRGA-HHLRTRAPRTRTRAVPLGPGA 148 Query: 2185 GIR-----RSGTYRTWFPAHVLHVSPPGERDRHRIHRRPACGRLWPQCRIRCAAGPGTAA 2349 +R R T R P V P R +HRR R+ + R+R GPG A Sbjct: 149 RVRTPVEDRRRTRRRRRPDPRRRVQP---RLGVGVHRRRGARRVGRRVRVRARPGPGAAR 205 Query: 2350 EHR 2358 R Sbjct: 206 RPR 208 >ref|NP_599066.1|repressor Length = 224 Score = 38.1 bits (87), Expect = 0.014 Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 11/132 (8%) Frame = -2 Query: 536 TATDTAMVPLVGRIAAG-----GPILADQVVEDVMPLPRQLVGHGEL-FMLKVTGDSMID 375 T +VP++ + AG G D + P P V GE+ ++L+V GDSMID Sbjct: 85 TNKQITLVPVISWVQAGAWKEVGYSEVDLSTAETYPCP---VPCGEMTYILRVIGDSMID 141 Query: 374 AAICDGDWVVVRRQSDAVNGDIVAALLDD--EATVKTFRQRDGHTWLLPQNTQY-EPILG 204 GD + V + A +GD V AL+ D E T K + +L N + EP + Sbjct: 142 -EYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQRYLKALNPNWPEPYIK 200 Query: 203 DHAN--IMGKVV 174 + N I+G V+ Sbjct: 201 INGNCSIIGTVI 212 >ref|NP_835522.1|similar to repressor Length = 237 Score = 37.7 bits (86), Expect = 0.018 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Frame = -2 Query: 404 LKVTGDSMIDAAICDGDWVVVRRQSDAVNGDIVAALLDDEATVKTFRQRDGHTWLLPQNT 225 LKV GDSM + DG+ + V + + NG I ++++EA VK D L+ N Sbjct: 158 LKVNGDSM-EPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNK 216 Query: 224 QYEPI---LGDHANIMGKVV 174 Y+ + + ++GKV+ Sbjct: 217 DYDDLHFYRNESVRLIGKVI 236 >ref|NP_803311.1|cI-like repressor Length = 237 Score = 37.7 bits (86), Expect = 0.018 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Frame = -2 Query: 404 LKVTGDSMIDAAICDGDWVVVRRQSDAVNGDIVAALLDDEATVKTFRQRDGHTWLLPQNT 225 LKV GDSM + DG+ + V + + NG I ++++EA VK D L+ N Sbjct: 158 LKVNGDSM-EPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNK 216 Query: 224 QYEPI---LGDHANIMGKVV 174 Y+ + + ++GKV+ Sbjct: 217 DYDDLHFYRNESVRLIGKVI 236 >ref|NP_510900.1|similar to phage phi PVL repressor Length = 238 Score = 37.4 bits (85), Expect = 0.024 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Frame = -2 Query: 404 LKVTGDSMIDAAICDGDWVVVRRQSDAVNGDIVAALLDDEATVKTFRQRDGHTWLLPQNT 225 LKV GDSM + DG+ + V + + NG I ++++EA VK D L+ N Sbjct: 159 LKVNGDSM-EPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNK 217 Query: 224 QYEPI---LGDHANIMGKVV 174 +Y + + ++GKV+ Sbjct: 218 KYRDLHFYRNESVRLVGKVI 237 >ref|NP_112053.1|repressor protein cI Length = 238 Score = 37.0 bits (84), Expect = 0.031 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 7/80 (8%) Frame = -2 Query: 419 GELFMLKVTGDSM---IDAAICDGDWVVVRRQSDAVNGDIVAALLDD--EATVKTFRQRD 255 G F LKV GDSM + +I +G +V+ +A+NG +V A L D EAT K Sbjct: 144 GNAFWLKVEGDSMTAPVGLSIPEGTFVLFDTGREAINGSLVIAKLSDSNEATFKKLIIDG 203 Query: 254 GHTWLLPQNTQYE--PILGD 201 G+ +L N + PI G+ Sbjct: 204 GNKYLKGLNPAWPLVPINGN 223 >ref|YP_164276.1|LexA-like protein Length = 69 Score = 35.8 bits (81), Expect = 0.069 Identities = 19/62 (30%), Positives = 34/62 (54%) Frame = -2 Query: 821 QKKILETIQRSVNDNGYPPSMREIGDTVGLASLSSVTHQLSQLEKLGYLRRDPKRPRAME 642 Q + L I+ + GY P++ E+ G+ + + +L+ LE GY++RDPK R++ Sbjct: 9 QNETLGHIRAFWAEKGYAPTVAELAAKAGVRQFA-IQQRLTALENKGYIQRDPKVARSIR 67 Query: 641 VL 636 L Sbjct: 68 PL 69 >ref|NP_599074.1|unknown Length = 108 Score = 35.0 bits (79), Expect = 0.12 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 7/95 (7%) Frame = -2 Query: 833 LTVRQKKILETIQRSVNDNGYPPSMREIGDTVGLASLSSVTHQLSQLEKLGYLRRDPKRP 654 LT Q+++L+ + + G+PP+ +E+ +G S+++ L LEK G + KR Sbjct: 4 LTQCQQQVLDMLISYQKERGFPPTNQEVATMLGYRSVNAAVEHLRALEKKGII--TIKRG 61 Query: 653 RAMEVLMPLTLDEGTAKISGV-------EKPARLR 570 A + + + + ++ G+ E+ ARLR Sbjct: 62 VARGITLHTAVKDDDSEAVGIIRSLLAGEENARLR 96 >ref|NP_543069.1|hypothetical protein Length = 308 Score = 33.5 bits (75), Expect = 0.34 Identities = 20/47 (42%), Positives = 27/47 (57%) Frame = +3 Query: 3810 GNVRSAVRALERAGAEVILSARPEDVLNADGLLVPGVGAFETVMREL 3950 GNV A A GA++++ AR D N DG+ PGV ET+ R+L Sbjct: 7 GNVWDACAAYGVKGAKLMIMARLADYSNDDGVCYPGV---ETICRQL 50 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,077,767 Number of Sequences: 14420 Number of extensions: 756858 Number of successful extensions: 2810 Number of sequences better than 0.5: 15 Number of HSP's better than 0.5 without gapping: 2066 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2805 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 3752339289 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig10 (16,433 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818160.1|gp87 46 1e-04 ref|NP_612899.1|hypothetical protein 39 0.017 ref|NP_047971.2|gp26 37 0.064 ref|NP_818608.1|gp70 35 0.32 >ref|NP_818160.1|gp87 Length = 1237 Score = 46.2 bits (108), Expect = 1e-04 Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 3/191 (1%) Frame = -2 Query: 14038 SQDDARQTTEQEGCQEADAPEHGRFEGDGTPPHGADPVEEL--HAGRYGDQHRHEGEERQ 13865 S D+ ++ + + D PE + DG P A+ E+ G D + +GE+ Sbjct: 356 SDSDSDSDSDSDDDVDEDGPEGPDTDSDGPPAGAAEKGGEISDEGGSEDDSNPFDGEDEA 415 Query: 13864 EDRAGDVHVVSPHGHGQSSDGDGCVHEALVAEDRLAAEDREDLGDDAEERQRDDVHLGVA 13685 + G+ P+G + D A+D A + + A E +D++ Sbjct: 416 PEEDGEDFPADPNGLEDAGPQDA------PADDGSAGGQEFTVPEQAPELPQDEMSQLQD 469 Query: 13684 KEPEQVLPEDCTAVLGIEDVCSEAAVRAE-GEQGCSERREGHEDQDGRNQRVPGKDRHAP 13508 P+ V PE +LG+ E + E G+ G +G Q R +R +D P Sbjct: 470 SGPQSVPPEVIDDILGLPPGTLEQLIAEELGQAGGGTPPQGSPPQLARRRRQAAED---P 526 Query: 13507 HGHARSAHADD 13475 G A SA D Sbjct: 527 TGAAESADQGD 537 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 38.9 bits (89), Expect = 0.017 Identities = 37/92 (40%), Positives = 43/92 (46%), Gaps = 5/92 (5%) Frame = +1 Query: 3370 PAGRPQGPGAQLRSRHP-GQLAVR*GRRGLPAEERAQPGPAAPRTDRILRGHPEADGHRG 3546 PAG PQGP + P G + R G RG R +PGPA PR +R G G RG Sbjct: 339 PAG-PQGPKGERGEAGPQGPMGAR-GERG-DTGPRGEPGPAGPRGERGETGPQGPMGARG 395 Query: 3547 RRGQRRPALADLPGRIPALQQGGR----PVGP 3630 RG+ P PG PA +G R P GP Sbjct: 396 ERGETGP--RGEPG--PAGPRGERGETGPQGP 423 >ref|NP_047971.2|gp26 Length = 174 Score = 37.0 bits (84), Expect = 0.064 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +2 Query: 15737 PGSSLPSERDLAERFGLARMTVRQAIDALVGEEVIE 15844 PG LPSER + E G+ R +RQ + LV E ++E Sbjct: 41 PGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGILE 76 >ref|NP_818608.1|gp70 Length = 177 Score = 34.7 bits (78), Expect = 0.32 Identities = 19/38 (50%), Positives = 24/38 (63%) Frame = -1 Query: 9557 RKAQEAARKRPLVPEDRKASKAAERAAVQEQRIKMRQA 9444 RKA++AA+ + L E K KAAERA Q QR+ R A Sbjct: 93 RKAEQAAKYKGLTDEQVKKVKAAERAQEQAQRMAARAA 130 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,160,981 Number of Sequences: 14420 Number of extensions: 1798984 Number of successful extensions: 6816 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 4022 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6762 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 7771151608 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig11 (29,084 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 41 0.006 ref|YP_195155.1|hypothetical protein 39 0.038 ref|NP_818455.1|gp155 35 0.32 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 41.2 bits (95), Expect = 0.006 Identities = 71/239 (29%), Positives = 86/239 (35%), Gaps = 12/239 (5%) Frame = +3 Query: 19008 RAHP-ARKRPRTREDHXXXXXXXXXXXXVPADSVHAGPAPQRHRGHA--DLRCRQGHVRH 19178 RAHP A +R RTR H GPA R H D CR+ R Sbjct: 24 RAHPRAHRRVRTRPHP------------------HLGPARDRSPDHPEPDHPCRRAPSRP 65 Query: 19179 PAWPGPRQHRPPGRDQPLQCENAERHARGDAGAADIHRGSGAPAALPVPCPGDAEPHRAG 19358 A GPR+H P R +P + AP P PG A A Sbjct: 66 AA--GPRRHPPVARTRP---------------------RTRAPEC--APDPGPAVHPAAP 100 Query: 19359 GHLPAARGPDGPLYAQR-RPGLPHAGRRGRDHPQDRFRRLHR*TAPSGGCVPGRGLGSAG 19535 G PAA P P YA RP P RG H + R R P G PG + + Sbjct: 101 GCAPAA--PAAPEYAPALRPRAPECD-RGAHHLRTRAPRTRTRAVPLG---PGARVRTPV 154 Query: 19536 AGQTRLHRSRNSALHRGA----GVCHPERRPVHRLPPGGFYRIRSQP----ARQYRLQP 19688 + R R R R GV RR R+ G R+R++P AR+ R +P Sbjct: 155 EDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRV--GRRVRVRARPGPGAARRPRRRP 211 Score = 41.2 bits (95), Expect = 0.006 Identities = 79/277 (28%), Positives = 90/277 (32%), Gaps = 6/277 (2%) Frame = +1 Query: 16933 RPPDHRLRCCVSGGGPEPAGTPDCRTDDTRPEAGVRRCGYCSGRRLGAPRDRGGLCRLRL 17112 R PDH PEP CR +RP AG RR + R PR R C Sbjct: 47 RSPDH----------PEP--DHPCRRAPSRPAAGPRRHPPVARTR---PRTRAPECAPDP 91 Query: 17113 FQQGRDAEPXXXXXXXXXXXXXXXXPHGCRGAGQHLARHRVLHAGVPRGPG-RRSQGHLR 17289 A P GC A A A PR P R HLR Sbjct: 92 GPAVHPAAP------------------GCAPAAP--AAPEYAPALRPRAPECDRGAHHLR 131 Query: 17290 GSPDGRRFRLAAPGVHHPAAHQVQHRHQFDARHAPDPGRVHPDLGDDGRRTVQCQHHFAG 17469 R R G V+ R + R PDP RR VQ Sbjct: 132 TRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDP-----------RRRVQ------- 173 Query: 17470 PRLPGGLQVRRHWLRHGDRLGAHC-PGPGV--RDWLRAAAEGGQTMRTTGRPPLAVASRR 17640 PRL G+ RR R G R+ PGPG R R E + +R P RR Sbjct: 174 PRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVR-----PRRRTGRR 228 Query: 17641 ATRRGVASPGFRRART--PADAALLLIGACFVLPLLW 17745 RR P RR R+ P + L L G +LW Sbjct: 229 HRRRASLRPRHRRHRSTPPMNTPLTLAGLALTAVILW 265 >ref|YP_195155.1|hypothetical protein Length = 372 Score = 38.5 bits (88), Expect = 0.038 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 16/174 (9%) Frame = +1 Query: 19015 ILLESVPGLAKTTAAQTVAEAVSAEFRRIQCTPDLLPSDIVGTQIYDAAKGTFVTQLGPV 19194 + + + G KT + + + E R+ T + D++G + G V GPV Sbjct: 118 VFITGLSGNGKTFSVEQACAVLKRELIRVNITIETDEDDLIGG--FRLLNGETVWHNGPV 175 Query: 19195 -----HANIVLLDEINRSSAKTQSAMLEAMQERQTSIGGVVHRLPSP---FLVLATQNPI 19350 I+LLDE++ +S K L+++ E + R P F ++AT N Sbjct: 176 VEALERGAILLLDEVDLASNKI--LCLQSILEGKGIFLKKTGRYVEPAAGFNIIATANTK 233 Query: 19351 EQE-------GTYLLPEAQMDRFMLKDVLDYPTPAEEAEIIRRIDSGV-FTDEQ 19488 + GT +L EA ++RF L +YP+ E I+++ + + TD++ Sbjct: 234 GKGSDDGRFIGTNVLNEAFLERFALTFEQEYPSTKVETTILKKAAADIQVTDDE 287 >ref|NP_818455.1|gp155 Length = 436 Score = 35.4 bits (80), Expect = 0.32 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 6/52 (11%) Frame = +1 Query: 13567 MSSLPDSSAGLILLNPPFHLG--ASVHAGAGI----KMFRAAGRVLEPGGEL 13704 ++S PD+S IL +PP+ LG G+GI +M+ RVL+PGG L Sbjct: 15 LASFPDASVDAILTDPPYELGFMGKKWDGSGIAFDVEMWEQCLRVLKPGGHL 66 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 139,397,295 Number of Sequences: 14420 Number of extensions: 3026724 Number of successful extensions: 11745 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 5390 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11708 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 13317599581 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig12 (26,663 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_665964.1|putative plasmid partitioning protein Soj 109 2e-23 ref|NP_892074.1|partitioning protein SpyA 79 2e-14 ref|YP_006605.1|Gp25 76 2e-13 ref|NP_046923.1|gp28 76 2e-13 ref|YP_006528.1|ParA 72 4e-12 ref|NP_817502.1|gp53 66 2e-10 ref|NP_758949.1|ORF58 54 8e-07 ref|NP_795396.1|site-specific recombinase 53 2e-06 ref|YP_164721.1|orf86 52 4e-06 ref|NP_958623.1|77ORF007 50 1e-05 ref|NP_061531.1|integrase 49 2e-05 ref|NP_818386.1|gp85 49 2e-05 ref|NP_536628.1|Int 49 3e-05 ref|NP_945240.1|integrase 49 3e-05 ref|NP_878228.1|Int 49 3e-05 ref|NP_839878.1|Int 49 3e-05 ref|NP_046786.1|Int 48 4e-05 ref|NP_665963.1|putative site specific recombinase Int2 46 2e-04 ref|NP_803307.1|integrase 46 2e-04 ref|NP_076752.1|integrase 46 2e-04 ref|NP_075464.1|integrase 45 3e-04 ref|NP_058467.1|integrase 45 3e-04 ref|NP_891650.1|distal long tail fiber assembly catalyst 45 3e-04 ref|NP_958084.1|gp27 45 3e-04 ref|YP_115515.1|integrase 45 4e-04 ref|NP_542581.1|hypothetical protein 44 6e-04 ref|NP_795489.1|putative integrase 44 8e-04 ref|NP_862840.1|gp1 44 8e-04 ref|YP_006360.1|Int 44 8e-04 ref|NP_818345.1|gp44 44 0.001 ref|NP_059584.1|Int 44 0.001 ref|NP_108680.1|integrase 44 0.001 ref|NP_813709.1|gp50 44 0.001 ref|NP_777346.1|hypothetical protein 44 0.001 ref|NP_076573.1|integrase 44 0.001 ref|NP_795429.1|putative integrase 43 0.001 ref|NP_720278.1|Int 43 0.001 ref|NP_116524.1|integrase 43 0.001 ref|NP_695147.1|integrase 42 0.002 ref|YP_025047.1|putative integrase 42 0.002 ref|NP_052278.1|Int 42 0.003 ref|NP_695029.1|Integrase 42 0.003 ref|NP_996675.1|integrase 42 0.003 ref|NP_624303.1|integrase fragment 42 0.003 ref|NP_599058.1|integrase 42 0.004 ref|NP_817384.1|gp46 42 0.004 ref|NP_536807.1|integrase 42 0.004 ref|NP_043466.1|integrase 42 0.004 ref|NP_076696.1|integrase 42 0.004 ref|NP_150133.1|integrase 41 0.005 ref|NP_511007.1|integrase 41 0.005 ref|NP_899408.1|NMN adenylyl tranferase 41 0.005 ref|NP_438114.1|integrase-like protein 41 0.007 ref|NP_795541.1|putative integrase 41 0.007 ref|NP_510895.1|similar to phage phi 11 integrase 41 0.007 ref|NP_795660.1|putative integrase 40 0.009 ref|NP_663635.1|putative integrase 40 0.009 ref|NP_958506.1|putative integrase 40 0.009 ref|NP_852580.1|DNA integration 40 0.009 ref|NP_076801.1|integrase 40 0.009 ref|NP_076635.1|integrase 40 0.009 ref|NP_061591.2|integrase 40 0.016 ref|NP_050999.1|P38 40 0.016 ref|NP_803254.1|integrase 39 0.021 ref|NP_852561.1|DNA integration 39 0.021 ref|YP_195258.1|hypothetical protein 39 0.027 ref|YP_024421.1|Hypothetical protein 39 0.035 ref|YP_164382.1|integrase 39 0.035 ref|NP_835517.1|integrase 38 0.046 ref|NP_803356.1|integrase 38 0.046 ref|NP_958556.1|putative integrase 38 0.060 ref|NP_852723.1|putative integrase 38 0.060 ref|NP_817472.1|gp22 37 0.078 ref|NP_075300.1|gp33 37 0.13 ref|NP_944303.1|conserved phage mega protein 36 0.17 ref|NP_938251.1|putative tail component protein 36 0.17 ref|NP_680502.1|integrase 36 0.23 ref|NP_817998.1|gp25 35 0.39 ref|NP_861819.1|NudE nudix hydrolase 35 0.39 ref|NP_076780.1|integrase 35 0.39 >ref|NP_665964.1|putative plasmid partitioning protein Soj Length = 256 Score = 109 bits (272), Expect = 2e-23 Identities = 65/177 (36%), Positives = 106/177 (59%), Gaps = 6/177 (3%) Frame = +1 Query: 23314 IAMVNQKGGVGKTTSTINLAAALAEYGRRVLLVDFDPQGALSAGLGT----NPHELDLTV 23481 I + NQKGG GKTT+T+N+A AL + G VL++D DPQG + GLG + E D ++ Sbjct: 3 IGVTNQKGGAGKTTTTLNVAGALNQLGNDVLVIDLDPQGHATEGLGFEDLYDDPERD-SL 61 Query: 23482 YNVLMDRKVDIRDAIQHTGVEN--VDLLPANIDLSAAEVQLVNEVAREQVLDRALKKVED 23655 ++VL + ++ D ++ VE+ VD +P++ + AE L N + RE+ L+ L + Sbjct: 62 FDVLPE--LERMDELEQLVVEHQEVDCVPSHETMINAEDALANVMKREERLEMLLDDADG 119 Query: 23656 DYDVVLIDCQPSLGLLTVNALTAAHGVIIPLICEFFALRAVALLVETIDKVQDRLNP 23826 +D VL+DC P+LG+LT NA+ A V+IP + ++RA+ LL + + ++ P Sbjct: 120 RWDYVLVDCPPNLGVLTDNAIVATGNVLIPAQAKSTSIRAIELLFKQLRSIESAFGP 176 >ref|NP_892074.1|partitioning protein SpyA Length = 389 Score = 79.3 bits (194), Expect = 2e-14 Identities = 70/250 (28%), Positives = 122/250 (48%), Gaps = 17/250 (6%) Frame = +1 Query: 23311 VIAMVNQKGGVGKTTSTINLAAALAEYGRRVLLVDF-DPQGALSAGLGTNP----HELDL 23475 V+A+ KGG KT+++++ A LA G RVLL+D DPQ S G P HE D Sbjct: 108 VLAIAAHKGGAYKTSTSVHTAQWLALQGLRVLLIDATDPQATASLYHGYVPDLHIHE-DE 166 Query: 23476 TVYNVLMDRKVDIRDAIQHTGVENVDLLPANIDLSAAEVQLVN-------EVAREQVLDR 23634 T+ + + D AI+ T N+D++P+ + + E +L VA +L Sbjct: 167 TLLPYYLGERDDAMYAIKPTCWPNLDIIPSCLAIHRIESELYPLHDAEKLPVAPHMMLRA 226 Query: 23635 ALKKVEDDYDVVLIDCQPSLGLLTVNALTAAHGVIIPLICEFF----ALRAVALLVETID 23802 A++ V D YDVV++D P+LG+ T+N + AA +++P E + L+ +L + + Sbjct: 227 AIESVWDSYDVVVLDSAPNLGIGTINVVCAADVIVVPTPAELYDYVSTLQFFTMLRDLMA 286 Query: 23803 KVQ-DRLNPRLQVDGVLATMYDARTLHSREVISRLVEAFGDKVFETVIKRSIKFADATVA 23979 V P ++V ++ +A S+ + + +A+G V + V++ + + V Sbjct: 287 GVDLGGFEPDVRV--LITKFSNAVGSQSQWMDDHIRDAWGSMVLKEVVRVTDEVGKGQVR 344 Query: 23980 AEPITSYAAN 24009 + AAN Sbjct: 345 MRTVFEQAAN 354 >ref|YP_006605.1|Gp25 Length = 387 Score = 75.9 bits (185), Expect = 2e-13 Identities = 68/248 (27%), Positives = 119/248 (47%), Gaps = 16/248 (6%) Frame = +1 Query: 23311 VIAMVNQKGGVGKTTSTINLAAALAEYGRRVLLVDF-DPQGALSAGLGTNPH---ELDLT 23478 V+A+++ KGGV KT+S ++ A LA G RVLL++ DPQG S G P D T Sbjct: 108 VLAVMSHKGGVYKTSSAVHEAQWLALQGHRVLLIEGNDPQGTASMYHGYVPDLHIHADDT 167 Query: 23479 VYNVLMDRKVDIRDAIQHTGVENVDLLPANIDLSAAEVQLVNEVAREQV-------LDRA 23637 + + + + AI+ T +D++P+ + L E L+ A+ ++ L A Sbjct: 168 LLPFYLGERDNAEYAIKPTCWPGLDIIPSCLALHRIETDLMQYHAQGKLPHPPHLMLRAA 227 Query: 23638 LKKVEDDYDVVLIDCQPSLGLLTVNALTAAHGVIIPLICEFF----ALRAVALLVETIDK 23805 ++ V D+YD+++ID P+LG T+N + AA +++ E F L+ +L++ + Sbjct: 228 IESVWDNYDIIVIDSAPNLGTGTINVVCAADIIVVATPAELFDYSSVLQFFTMLLDLLKT 287 Query: 23806 VQDRLNPRLQVDGVLATMYDART-LHSREVISRLVEAFGDKVFETVIKRSIKFADATVAA 23982 V L V +L T Y T SR + ++ +G V V++ + + + Sbjct: 288 VD--LGGFEPVVRLLLTKYSLTTGNQSRWMEEQIRNTWGSMVLRQVVRVTDEVGKGQIKM 345 Query: 23983 EPITSYAA 24006 + AA Sbjct: 346 RTVFEQAA 353 >ref|NP_046923.1|gp28 Length = 387 Score = 75.9 bits (185), Expect = 2e-13 Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 16/249 (6%) Frame = +1 Query: 23311 VIAMVNQKGGVGKTTSTINLAAALAEYGRRVLLVDF-DPQGALSAGLGTNPH---ELDLT 23478 V+++++ KGGV KT+S ++ A LA G RVLLV+ DPQG S G P D T Sbjct: 108 VLSVMSHKGGVYKTSSAVHQAQWLALQGHRVLLVEGNDPQGTASMYHGYVPDLHIHADDT 167 Query: 23479 VYNVLMDRKVDIRDAIQHTGVENVDLLPANIDLSAAEVQLVNEVAREQV-------LDRA 23637 + + ++ + AI+ T +D++P+ + L E L+ + ++ L A Sbjct: 168 LLPFYLGKRDNAEYAIKPTCWPGLDIIPSCLALHRIETDLMQYHSEGKLPHPPHLMLRAA 227 Query: 23638 LKKVEDDYDVVLIDCQPSLGLLTVNALTAAHGVIIPLICEFF----ALRAVALLVETIDK 23805 ++ V D+YD+++ID P+LG T+N + AA +++ E F L+ +L++ ++ Sbjct: 228 IESVWDNYDIIVIDSAPNLGTGTINVVCAADVIVVATPAELFDYASVLQFFTMLLDLLET 287 Query: 23806 VQDRLNPRLQVDGVLATMYD-ARTLHSREVISRLVEAFGDKVFETVIKRSIKFADATVAA 23982 V L V +L T Y SR + ++ +G V V++ + + + Sbjct: 288 VD--LGGFEPVVRLLLTKYSLTNGNQSRWMEEQIRNTWGAMVLRQVVRVTDEVGKGQIKM 345 Query: 23983 EPITSYAAN 24009 + AAN Sbjct: 346 RTVFEQAAN 354 >ref|YP_006528.1|ParA Length = 398 Score = 71.6 bits (174), Expect = 4e-12 Identities = 73/270 (27%), Positives = 121/270 (44%), Gaps = 37/270 (13%) Frame = +1 Query: 23296 HGPARVIAMVNQKGGVGKTTSTINLAAALAEYGR------RVLLVDFDPQGALSAGLGTN 23457 + A VI + N KGGV KT ST++LA A+ + R+L++D DPQ + + L Sbjct: 105 YSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLS-- 162 Query: 23458 PHELDLTVYNVL--------MDRKVDIRDAIQHTGVENVDLLPANID---LSAAEVQLVN 23604 H+ + + N + R+ + + I + V VD++PA+ID +++ +L N Sbjct: 163 -HKHSIGIVNATSAQAMLQNVSREELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCN 221 Query: 23605 EVAREQVLDRALK-----KVEDDYDVVLIDCQPSLGLLTVNALTAAHGVIIPL----ICE 23757 E Q + LK K++ DYD +L+D P L NAL +A+ + PL + Sbjct: 222 EHLPGQNIHAVLKENVIDKLKSDYDFILVDSGPHLDAFLKNALASANILFTPLPPATVDF 281 Query: 23758 FFALRAVALLVETIDKVQD-----RLNPRLQVDGVLATMYDARTLHSREVISRLVEAFGD 23922 +L+ VA L E + + D +L + L+ D + H S E FG Sbjct: 282 HSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKADHKYCH-----SLAKEVFGG 336 Query: 23923 KVFETVIKRSIKFA------DATVAAEPIT 23994 + + + R F D ++A P T Sbjct: 337 DMLDVFLPRLDGFERCGESFDTVISANPAT 366 >ref|NP_817502.1|gp53 Length = 293 Score = 65.9 bits (159), Expect = 2e-10 Identities = 52/164 (31%), Positives = 74/164 (45%) Frame = +3 Query: 11475 VHPPMPGKRLPKAISVDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDD 11654 V PP +++ K +S V ++ +T RD+AL+ TG R +E + LDV+D Sbjct: 97 VRPPKLDQKVVKHLSDRAVQALVATCAGNTFRDRRDKALIVLFTETGIRAAEMLALDVED 156 Query: 11655 ISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALDAYLVRGRPLLAAKGKGTPALFLNA 11834 +SL Q + GKG+K R V A +D YL R G G+ Sbjct: 157 VSLVDCQ----LTVRRGKGAKGRRVKYSPMCAATIDKYLRARR----RAGHGSEGPLWIG 208 Query: 11835 RGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGG 11966 GGR+S + LK AD A + PH LRH+ A L+ G Sbjct: 209 LGGRLSYTGMKSSLKRRADDAGV-PGFHPHRLRHTSAVRWLKAG 251 >ref|NP_758949.1|ORF58 Length = 210 Score = 53.9 bits (128), Expect = 8e-07 Identities = 25/43 (58%), Positives = 34/43 (79%) Frame = +1 Query: 23305 ARVIAMVNQKGGVGKTTSTINLAAALAEYGRRVLLVDFDPQGA 23433 A++IA++NQKGG GKTT + N+A+ L G +VLLVD DPQG+ Sbjct: 20 AKLIAILNQKGGAGKTTISTNVASQLHADGHKVLLVDLDPQGS 62 >ref|NP_795396.1|site-specific recombinase Length = 191 Score = 52.8 bits (125), Expect = 2e-06 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 4/168 (2%) Frame = +3 Query: 11577 RDRALLEFLYSTGARISEAVGLDVDDISLQADQAGPAIVRLFGKGSKERLVPLGSYGARA 11756 R+ LL F +TG RI + + L V D++ AG I + K K++ P+ R Sbjct: 26 RNFLLLLFGLNTGLRIGDILPLKVKDVT-----AGNYIDIIEQKTGKQKRFPINKTLRRE 80 Query: 11757 LDAYL----VRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAADKANITKDVSPH 11924 +D Y+ ++ L K + ISR+ AW IL AA + I + H Sbjct: 81 IDKYIKDKQLKPWDYLFESQKKCTEPGKEGQKKPISREQAWKILNKAAKQFGI-HHIGTH 139 Query: 11925 TLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREIYA 12068 ++R SF H+ + D+ ++ E+ H+S T Y + + + + A Sbjct: 140 SMRKSFGYHMYQKTQDIAMLMEMFNHSSPDITLRYIGINQERIDDAVA 187 >ref|YP_164721.1|orf86 Length = 177 Score = 51.6 bits (122), Expect = 4e-06 Identities = 46/174 (26%), Positives = 90/174 (51%), Gaps = 3/174 (1%) Frame = +1 Query: 10456 RLLSSRKVYEGRIWDVVSDSFQLSEHGDELVRDYIDHPGAVAVLPMNDAGEVLLMKQYRH 10635 +++SS K+++G I+D+ S +L+ +G R+ I ++ +L +N+ +VL+ +YR Sbjct: 4 KVISSEKLFKGAIFDLYRLSIKLA-NGVVANREIIKKSDSITMLVVNEDNKVLIEYEYRS 62 Query: 10636 PVGMDLWEIPAGLLDIEGEDFVVGAARELAEEADLVAG--TWNVLADFFNSPGSSSEAIR 10809 P+ + PAGL+ + ED V A REL EE L+ + + + S G + E Sbjct: 63 PLYKTVAGFPAGLI-TKDEDPYVTARRELQEETGLLVDPKAFKRVGIYTLSEGFTDERSH 121 Query: 10810 IYLARDLSDVPDHELHVRTDEEAEIE-LHWTPLDEAVAAVLEGRLHNPSAVVGI 10968 +++ + L+ ++ D++ IE W L+ A E ++H+ +A + I Sbjct: 122 VFIVK-LTKNNYKSVNKDFDDDEYIEGWKWVSLNSA-----ENQVHSAAANLAI 169 >ref|NP_958623.1|77ORF007 Length = 401 Score = 50.1 bits (118), Expect = 1e-05 Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 20/203 (9%) Frame = +3 Query: 11514 ISVDEVTRILEAAGTDTATGLRDRALL----EFLYSTGARISEAVGLDVDDISLQADQAG 11681 + +++V +I + D R R L+ E TG RI E + L V D+ L+ Sbjct: 190 LEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKDVDLKNKTIA 249 Query: 11682 --PAIVRL---FGKGSKERLVPLGSYGARALDAYLVRGRPLLAAKGKGTPA--------- 11819 I R+ G G K+ GS A+++ + + + K Sbjct: 250 INGTIHRIKCNAGFGHKDTTKTAGSRRKIAINSRIANVLKKIMLENKKMQQWEPSYVDRG 309 Query: 11820 -LFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELL 11996 +F +G + L +AA+ NI K V+ HTLRH+ + L E ++ + + + Sbjct: 310 FIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNISLKAIMKRV 369 Query: 11997 GHA-SVTTTQVYTLVTADTLREI 12062 GH TT +VYT VT RE+ Sbjct: 370 GHTDEKTTIKVYTHVTEKMDREL 392 >ref|NP_061531.1|integrase Length = 369 Score = 49.3 bits (116), Expect = 2e-05 Identities = 59/204 (28%), Positives = 88/204 (43%), Gaps = 12/204 (5%) Frame = +3 Query: 11484 PMPGKRLPKAISVDE-VTRILEAAGTDTATGLRDRALLE----FLYSTGARISEAVGLD- 11645 P+ G+++ +A D +TR A A G + +LE +TG R E +GL+ Sbjct: 147 PVKGRKMREAEGRDRWLTRAEVEALCRAARGQKFGPMLEDFIRLAVNTGCRREEMLGLEW 206 Query: 11646 --VDD----ISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALDAYLVRGRPLLAAKGK 11807 VD I L+A K K R +P+ GA A L R + Sbjct: 207 RRVDFANRLIYLEASHT---------KAGKRRSIPINE-GAMAA---LKRRMAFRSETSP 253 Query: 11808 GTPALFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQ 11987 P +F A G R+ SA K A A I D + H LRH+ A L+ G + V+ Sbjct: 254 ECPWVFARANGDRVISLSAG--FKQACQAAKIA-DFTIHDLRHTCAAWLVSAGVPLADVR 310 Query: 11988 ELLGHASVTTTQVYTLVTADTLRE 12059 +LLGH++V T+ Y + +R+ Sbjct: 311 DLLGHSTVAMTERYAHLAPARVRD 334 >ref|NP_818386.1|gp85 Length = 424 Score = 49.3 bits (116), Expect = 2e-05 Identities = 54/178 (30%), Positives = 76/178 (42%), Gaps = 19/178 (10%) Frame = +3 Query: 11613 GARISEAVGLDVDDISLQADQAGPAIVRLFGKGSKE---RLVPLGSYGARAL------DA 11765 GAR SEA G D + + AIVR K +K R +P+ + DA Sbjct: 247 GARTSEAFGARGRDFRGRIWELYGAIVRNVEKDTKTHRARFIPIPDVVWNKIQMPANPDA 306 Query: 11766 YLVRGRPLLAAKGKGTPAL--FLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHS 11939 + GR G+ A L R + A I + ++PH LRH+ Sbjct: 307 LVFPGRRGHITNGEYRWAFDGALRTMQERTEKLRAEEIAETGRATTPAFPRITPHDLRHT 366 Query: 11940 FATHLLEGGADVRVVQELLGHA-SVTTTQVYTLVTAD-------TLREIYAAAHPRAL 12089 A+ + GA+V+ VQ LLGHA +V T +Y + +D L E AAA PR+L Sbjct: 367 CASLAISSGANVKAVQNLLGHATAVMTLDLYGHLLSDDLDRVMTALNEAAAAASPRSL 424 >ref|NP_536628.1|Int Length = 345 Score = 48.9 bits (115), Expect = 3e-05 Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 6/204 (2%) Frame = +3 Query: 11460 DPASDVHPPMPGKRLPKAISVDEVTRILEAAGTDTATGLRDRALLEFLY------STGAR 11621 +P D+ P +R + ++ L+ G + G R ++ E + +TGAR Sbjct: 156 NPLDDIEPIKVNQRALAYLDKADIQPFLQRLGGFESDG-RSVSIPEIVLIAKICLATGAR 214 Query: 11622 ISEAVGLDVDDISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALDAYLVRGRPLLAAK 11801 ISEA+ L+ IS + + KG + R VP+ + Y + ++ A Sbjct: 215 ISEALSLERSQISEFK------LTFVETKGKRIRSVPISE------NLY----KEIMLAS 258 Query: 11802 GKGTPALFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRV 11981 T +F G SA +K A + + + H LRH+FATH + D+ + Sbjct: 259 SSSTK-IFSTTYG------SAHRYIKKALPDY-VPEGQATHVLRHTFATHFMMNRGDILI 310 Query: 11982 VQELLGHASVTTTQVYTLVTADTL 12053 +Q +LGH + T Y + D L Sbjct: 311 LQRILGHQKIEQTMAYAHFSPDHL 334 >ref|NP_945240.1|integrase Length = 380 Score = 48.9 bits (115), Expect = 3e-05 Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 29/228 (12%) Frame = +3 Query: 11445 GITTADPASDVHPPMPGKRLP-------KAISVDEVTRILEAAGTDTATGLRDRALLEFL 11603 GI +PA P K L K + DE+ +L+ +T R L EF+ Sbjct: 145 GIIKDNPARRAKLPRVQKTLEDWKKVGQKYLEEDEIKLLLKELYRRPST-YRIGLLSEFM 203 Query: 11604 YSTGARISEAVGLDVDDISLQADQAGPAIVRLFG---------KGSKERLVPLGSYGARA 11756 G RI EAVG++ ++ +++ ++L G KG K L SY Sbjct: 204 SLNGCRIGEAVGIEPHNVDYESNT-----LQLHGTYDHTNGYQKGEKTSPKTLASYRETV 258 Query: 11757 L---DAYLVRGRPLLAAKGKGTPA-------LFLNARGGRISRQSAWTILKAAADKAN-- 11900 + + ++ + K T +F G + S LK A ++ Sbjct: 259 MTTREKEILEEMEFMNELEKNTNPRYKDMGFIFTTKNGVPLQTNSFNLALKKANERLETP 318 Query: 11901 ITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASV-TTTQVYTLVT 12041 I K+++ H RH+ + L E ++ + + +GH+ TTTQ+YT +T Sbjct: 319 IQKNLTSHIFRHTLVSRLAENNVPLKAIMDRVGHSDAKTTTQIYTHIT 366 >ref|NP_878228.1|Int Length = 326 Score = 48.5 bits (114), Expect = 3e-05 Identities = 21/59 (35%), Positives = 35/59 (59%) Frame = +3 Query: 11892 KANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREIYA 12068 K +I + + H LRH+FA+H + G ++ +Q++LGHAS+ T Y + D L+ A Sbjct: 258 KPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAVA 316 >ref|NP_839878.1|Int Length = 326 Score = 48.5 bits (114), Expect = 3e-05 Identities = 21/59 (35%), Positives = 35/59 (59%) Frame = +3 Query: 11892 KANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREIYA 12068 K +I + + H LRH+FA+H + G ++ +Q++LGHAS+ T Y + D L+ A Sbjct: 258 KPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAVA 316 >ref|NP_046786.1|Int Length = 337 Score = 48.1 bits (113), Expect = 4e-05 Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 6/200 (3%) Frame = +3 Query: 11478 HPPMPGKRLPKA------ISVDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVG 11639 HP KRL + ++ +E+ +L A D ++ + STGAR EA Sbjct: 147 HPIRGTKRLKEEKPETGYLTQEEIALLLAALDGD------NKKIAILCLSTGARWGEAAR 200 Query: 11640 LDVDDISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALDAYLVRGRPLLAAKGKGTPA 11819 L ++I + + K +K R VP+ A+ ++A +G Sbjct: 201 LKAENIIHNR------VTFVKTKTNKPRTVPISEAVAK-----------MIADNKRGF-- 241 Query: 11820 LFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLG 11999 LF +A R R A K ++ + H LRHSFATH + G + +Q +LG Sbjct: 242 LFPDADYPRFRRTMK-------AIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILG 294 Query: 12000 HASVTTTQVYTLVTADTLRE 12059 H + T VY + L++ Sbjct: 295 HTRIEQTMVYAHFAPEYLQD 314 >ref|NP_665963.1|putative site specific recombinase Int2 Length = 199 Score = 46.2 bits (108), Expect = 2e-04 Identities = 59/178 (33%), Positives = 77/178 (43%), Gaps = 29/178 (16%) Frame = +3 Query: 11577 RDRALLEFLYSTGARISEAVG-----LDVDDISLQAD---QAG--------PAIVRLFGK 11708 RD A+L LY TG R +E G LDVDD L+ Q G PA L + Sbjct: 30 RDNAILTLLYDTGLRRAELSGVDRAMLDVDDELLRIPSRIQKGYPNDRDPRPATFEL-DR 88 Query: 11709 GSKERLVPLGSYGARALDAYL-VRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAA 11885 G R + L+AYL VR ALF + R+S + ++K A Sbjct: 89 GENLRTI-------ATLNAYLEVR---------DDVDALFPSQMSTRMSPKGVNDVVKRA 132 Query: 11886 ADKANI----------TKDVSPHTLRHSFATHLL--EGGADVRVVQELLGHASVTTTQ 12023 A +A+I DVS HTLRHS A +L E G + V+ L H S+ TT+ Sbjct: 133 ARRADIRPFTFEGRGGPDDVSAHTLRHSLAWRMLRVETGNILYDVRNRLRHRSLQTTE 190 >ref|NP_803307.1|integrase Length = 401 Score = 46.2 bits (108), Expect = 2e-04 Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 20/203 (9%) Frame = +3 Query: 11514 ISVDEVTRILEAAGTDTATGLRDRAL----LEFLYSTGARISEAVGLDVDDISL--QADQ 11675 + +++V +I + D R+R L LE TG RI E L DI L + Sbjct: 190 LEMNQVLQIRDHILNDNKLQKRNRILIASILEVQALTGMRIGELQALQEKDIDLLNKTIN 249 Query: 11676 AGPAIVRL-FGKG----------SKERLVPLGSYGARALDAYLVRGRPLLAAKGKGTPA- 11819 I R+ + KG S +R + + S ++ + L Sbjct: 250 ITGTIHRIKYEKGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKRWNSSYVDRG 309 Query: 11820 -LFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELL 11996 +F +G + +LK N+ K V+ HT RH+ T L+E ++ + + + Sbjct: 310 FIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRV 369 Query: 11997 GHA-SVTTTQVYTLVTADTLREI 12062 GH TT ++YT VT RE+ Sbjct: 370 GHVDEKTTIRIYTHVTEKMDREL 392 >ref|NP_076752.1|integrase Length = 394 Score = 45.8 bits (107), Expect = 2e-04 Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 8/152 (5%) Frame = +3 Query: 11589 LLEFLYSTGARISEAVGLDVDDISLQADQAGP------AIVRLFGKGSKE-RLVPLGSYG 11747 L L ++G RI EAV L DI + A+++ K K R+V + S Sbjct: 219 LCRLLVASGLRIGEAVALSWSDIDFKTGSVSVSKTTLRAVIQSTPKTDKSNRIVLIDSKA 278 Query: 11748 ARALDAYLVRGRPLLAAKGKGTPAL-FLNARGGRISRQSAWTILKAAADKANITKDVSPH 11924 L + + + GKG L F N GG + Q+ L + + V H Sbjct: 279 VEVLKHWELFQAKYFMSIGKGKQELVFPNRTGGVLDYQTMRPFLIKWLRACQLPQ-VGFH 337 Query: 11925 TLRHSFATHLLEGGADVRVVQELLGHASVTTT 12020 RHS A+ LL + +QE LGHAS+ T Sbjct: 338 GFRHSHASLLLNADVPYKEIQERLGHASIKMT 369 >ref|NP_075464.1|integrase Length = 401 Score = 45.4 bits (106), Expect = 3e-04 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = +3 Query: 11820 LFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLG 11999 +F +G + +LK N+ K V+ HT RH+ T L+E ++ + + +G Sbjct: 311 IFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVG 370 Query: 12000 HA-SVTTTQVYTLVTADTLREI 12062 H TT ++YT VT RE+ Sbjct: 371 HVDEKTTIRIYTHVTEKMDREL 392 >ref|NP_058467.1|integrase Length = 401 Score = 45.4 bits (106), Expect = 3e-04 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = +3 Query: 11820 LFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLG 11999 +F +G + +LK N+ K V+ HT RH+ T L+E ++ + + +G Sbjct: 311 IFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVG 370 Query: 12000 HA-SVTTTQVYTLVTADTLREI 12062 H TT ++YT VT RE+ Sbjct: 371 HVDEKTTIRIYTHVTEKMDREL 392 >ref|NP_891650.1|distal long tail fiber assembly catalyst Length = 258 Score = 45.4 bits (106), Expect = 3e-04 Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Frame = +1 Query: 1792 GAGGGDRDRKPFGDRP--SREGGERRSFGAGGAGDRDRKPFGAGGGDRDRKPFGDRPSRE 1965 GA GG+ G R + G G GG G+R R FG GGG +PFG Sbjct: 125 GAAGGNAINNAIGTRLRITNNGAIAGGGGGGGGGNRGRLVFGGGGG----RPFG-----A 175 Query: 1966 GGERRSFGAGGAGDRDRKPFGAGGAGDRDRKPFGAGSGDRDRKSFGDRPSREGGERRSFG 2145 GG + G+G P G G G+ + G+G + G ++ G + G Sbjct: 176 GGSSSNMGSGATAGSISAP-GKGSVGEGSLSAYTGGAGGNVGAAGGRCNTQGNGTEYNGG 234 Query: 2146 AGG 2154 A G Sbjct: 235 AAG 237 Score = 37.0 bits (84), Expect = 0.10 Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Frame = +1 Query: 2023 FGAGGAGDRDRKPFGAGSGDRDRKSFGDRP--SREGGERRSFGAGGAGDRDRKPFGAGSG 2196 +G GG G + GA G+ + G R + G G GG G+R R FG G G Sbjct: 113 YGRGGNGGSNAA--GAAGGNAINNAIGTRLRITNNGAIAGGGGGGGGGNRGRLVFGGGGG 170 Query: 2197 DRDRKPFGDRPSREGGERRSFGAGGAGDRDRKPFGAGS 2310 +PFG GG + G+G P G GS Sbjct: 171 ----RPFG-----AGGSSSNMGSGATAGSISAP-GKGS 198 >ref|NP_958084.1|gp27 Length = 349 Score = 45.4 bits (106), Expect = 3e-04 Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 1/158 (0%) Frame = +3 Query: 11589 LLEFLYSTGARISEAVGLDVDDISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALDAY 11768 ++E +TGAR SEA L +S + KG K R VP+ + Sbjct: 201 IVEICLATGARWSEAERLTRPQLSPYK------LTFTKTKGKKNRTVPITKW-------- 246 Query: 11769 LVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAA-DKANITKDVSPHTLRHSFA 11945 L K L+ R GR+ + K +T+ H LRH+F Sbjct: 247 -------LYEK--------LSTRQGRMFKPCYQEFKKMLLLTDIELTEGQKTHVLRHTFG 291 Query: 11946 THLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLRE 12059 H + G ++ V+Q++LGHA++ T Y+ D L + Sbjct: 292 AHFMMNGGNILVLQKILGHANIRETMKYSHFAPDHLEQ 329 >ref|YP_115515.1|integrase Length = 427 Score = 45.1 bits (105), Expect = 4e-04 Identities = 53/202 (26%), Positives = 77/202 (38%), Gaps = 32/202 (15%) Frame = +3 Query: 11583 RALLEFLYSTGARISEAVGLDVDDISLQADQAGPAIV------RLFGKGSKE-----RLV 11729 R L+ FL TG R EA L +++ L A V +LF K + + R V Sbjct: 219 RPLVVFLEHTGLRWGEATALRWENVDLDAHHLKVKEVLSDDEGKLFRKPAPKSNAGFRTV 278 Query: 11730 PLGSYGARALDAYLVRGRPLLAAKGKGTPA--------LFLNARGGRISRQSAWTILKAA 11885 PL A+ + R RP G +F +GG ++R + A Sbjct: 279 PLTPQAEDAIRTMVTRWRPTPTITPIGEDPYDLAPDELVFRGPQGGVLTRHNFRRTWIPA 338 Query: 11886 ADKANITKDVSP------------HTLRHSFATHLLEGGADVRVVQELLGH-ASVTTTQV 12026 A + ++V H LRH FAT L + G D + Q ++GH T + Sbjct: 339 IKAAGLAREVKNRDTGRMEWWPRVHDLRHVFATWLKDVGIDEKDTQTVMGHERGSKVTWL 398 Query: 12027 YTLVTADTLREIYAAAHPRALG 12092 Y AD ++ AA P G Sbjct: 399 YQHSPADVAAKVRAAMAPETEG 420 >ref|NP_542581.1|hypothetical protein Length = 311 Score = 44.3 bits (103), Expect = 6e-04 Identities = 60/213 (28%), Positives = 75/213 (35%), Gaps = 15/213 (7%) Frame = +1 Query: 1732 PREGGERRSFGAGDRDRKPFGAGG----GDRDRKPFGDRPSREGGERRSFGAGGAG---- 1887 P G + GAG GAGG GD D + G+ + G GG G Sbjct: 88 PVSGDVTLTVGAG-------GAGGEGDNGDWDTSHGHNGEDSTFGDLTAIGGGGGGAYTS 140 Query: 1888 ----DRDRKPFGAGGGDRDRKPFGD--RPSREGGERRSFGAGGAGDRDRKPFGAGGAGDR 2049 D + G+GGG D G +P+ +GG G + GAG GD Sbjct: 141 RISSDYGGRDGGSGGGATDESQPGSALQPATDGGYGHGSIHGRINEYSSGGGGAGEPGDA 200 Query: 2050 DRKPFGAGSGDRDRKSFGDRPSREGGERRSFGAGGAGDRDRKPFGAGSGDRDRKPFGDRP 2229 D G G G +FG + GE F GG G SG R G+ Sbjct: 201 DGDSQG-GDGMDFSSTFG----TQYGENGWFAGGGGGSVYST---TASGPNGRSLGGNGG 252 Query: 2230 SREGGERRSFGAGGAGDRDRKP-FGAGSGDRDR 2325 GG S G+G D P G G G +R Sbjct: 253 GGNGGVEVSDGSGLNVGEDAMPNTGGGGGGSER 285 Score = 40.8 bits (94), Expect = 0.007 Identities = 43/147 (29%), Positives = 57/147 (38%), Gaps = 12/147 (8%) Frame = +1 Query: 1876 GGAGDRDRKPFGAGGGDRDRKPFGDRPSREGGERRSFGAGGAGDRDRKPFGAGGAGDRDR 2055 GG G P GAGGG P G + GAGGAG G G GD D Sbjct: 62 GGGGGGGGSPHGAGGGAGGLIHKTSYPV-SGDVTLTVGAGGAG-------GEGDNGDWDT 113 Query: 2056 KPFGAGSGDRDRKSFGDRPSREGGERRSFGAGGAGDRDRKPFGAGSGDRDRKPFGD--RP 2229 G + +FGD + GG ++ + + D + G+G G D G +P Sbjct: 114 SHGHNG----EDSTFGDLTAIGGGGGGAYTSRISSDYGGRDGGSGGGATDESQPGSALQP 169 Query: 2230 SREGG----------ERRSFGAGGAGD 2280 + +GG S G GGAG+ Sbjct: 170 ATDGGYGHGSIHGRINEYSSGGGGAGE 196 >ref|NP_795489.1|putative integrase Length = 380 Score = 43.9 bits (102), Expect = 8e-04 Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 22/200 (11%) Frame = +3 Query: 11508 KAISVDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLQADQAGPA 11687 K + DE+ +L+ +T R L EF+ G RI EAV ++ + ++ Sbjct: 173 KYLEEDEIKPLLKELYRRPST-YRLGLLAEFISLNGCRIGEAVSIEPCNYESKS-----R 226 Query: 11688 IVRLFG---------KGSKERLVPLGSYGARAL---DAYLVRGRPLLAAKGKGTPA---- 11819 I++L G G K L SY + + +++ + K T Sbjct: 227 ILQLHGTFDHTEGYRNGEKTAPKTLASYRETIMTSRELEILQELEFMNELEKNTNHRYRD 286 Query: 11820 ---LFLNARGGRISRQSAWTILKAAADKAN--ITKDVSPHTLRHSFATHLLEGGADVRVV 11984 LF G I S LK A ++ ITK ++ H RH+ + L E ++ + Sbjct: 287 MGYLFTTKNGVPIQTNSFNLALKKANERLEDPITKKLTSHIFRHTLISRLAENNVPLKSI 346 Query: 11985 QELLGHASV-TTTQVYTLVT 12041 E +GHA TT Q+YT VT Sbjct: 347 MERVGHADAKTTAQIYTHVT 366 >ref|NP_862840.1|gp1 Length = 375 Score = 43.9 bits (102), Expect = 8e-04 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Frame = +3 Query: 11871 ILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASV-TTTQVYTLVTAD 12047 I+K KA I K++S H RHS ++L E G ++ + + +GHA+ T ++Y+ T D Sbjct: 303 IIKKYGAKAGIEKNLSSHIFRHSHISYLAEAGLPIKSIMDRVGHANAKMTLEIYSHTTQD 362 >ref|YP_006360.1|Int Length = 387 Score = 43.9 bits (102), Expect = 8e-04 Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 6/206 (2%) Frame = +3 Query: 11460 DPASDVHPPMPGKRLPKAISVDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVG 11639 D A + P P + + + E R+++ ++++EF STG R S + Sbjct: 168 DKAPIIKVPQPKNKRIRWLEPHEAKRLIDECPEPL------KSVVEFALSTGLRRSNIIN 221 Query: 11640 LDVDDISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALDAYLVRGRPLL------AAK 11801 +D I +Q A I K ++ V L R L + + + K Sbjct: 222 MDWQQIDMQRKVAW--IHPEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTK 279 Query: 11802 GKGTPALFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRV 11981 GT + + R R +AW ++A +A I +D H LRH++A+ L++ G + V Sbjct: 280 PDGTKSPVV--RKMRYDANTAW---RSALKRAGI-EDFRFHDLRHTWASWLVQAGVPISV 333 Query: 11982 VQELLGHASVTTTQVYTLVTADTLRE 12059 +QE+ G S+ + Y + + L E Sbjct: 334 LQEMGGWESIEMVRRYAHLAPNHLTE 359 >ref|NP_818345.1|gp44 Length = 326 Score = 43.5 bits (101), Expect = 0.001 Identities = 38/127 (29%), Positives = 50/127 (39%), Gaps = 6/127 (4%) Frame = +1 Query: 1837 PSREGGERRSFGAGGAGDRDRKPFGAGGGDRDRKPFGDRPSREGGERRSFGAGGAGDRDR 2016 P GG+ + +G A D P GAG G D S+ G R A G G +R Sbjct: 194 PGAPGGKGAA-SSGSAEDGGDNPSGAGAGGGGGGRVSDSNSQTPGGRGGNSAVGTGG-ER 251 Query: 2017 KPFGAGG--AGDRDRKPFGAGSGDRDRKSFGDRPSREGGERRSFGAGGAGD----RDRKP 2178 GA G A D+ GAG G + G + GG +G GG G + + Sbjct: 252 GGAGANGSSAADQTGGNPGAGGGGGGGNNSGSTTTGHGGNGGKYGGGGGGSGGHRTNARR 311 Query: 2179 FGAGSGD 2199 +G GD Sbjct: 312 YGGAGGD 318 Score = 41.6 bits (96), Expect = 0.004 Identities = 40/123 (32%), Positives = 46/123 (37%), Gaps = 19/123 (15%) Frame = +1 Query: 1732 PREGGERRSFGAGDRDRKPFGAGGG--------DRDRKPFGDRPSRE----GGERRSFGA 1875 P G S A D P GAG G D + + G R GGER GA Sbjct: 197 PGGKGAASSGSAEDGGDNPSGAGAGGGGGGRVSDSNSQTPGGRGGNSAVGTGGERGGAGA 256 Query: 1876 GG--AGDRDRKPFGAGGGDRDRKPFGDRPSREGGERRSFGAGGAGD-----RDRKPFGAG 2034 G A D+ GAGGG G + GG +G GG G R+ GAG Sbjct: 257 NGSSAADQTGGNPGAGGGGGGGNNSGSTTTGHGGNGGKYGGGGGGSGGHRTNARRYGGAG 316 Query: 2035 GAG 2043 G G Sbjct: 317 GDG 319 Score = 40.4 bits (93), Expect = 0.009 Identities = 46/163 (28%), Positives = 58/163 (35%), Gaps = 28/163 (17%) Frame = +1 Query: 1912 AGGGDRDRKPFGDRPSREGGERRSF-----GAGGAGDRDRKPFGAGGAG-----DRDRKP 2061 AGGG R ++ G S G GA P G G A D P Sbjct: 156 AGGGARGAIALSGSSTQVSGGAGSLTSVTSGVAGAVVIPGAPGGKGAASSGSAEDGGDNP 215 Query: 2062 FGAGSG--------DRDRKSFGDRPSRE----GGERRSFGAGG--AGDRDRKPFGAGSGD 2199 GAG+G D + ++ G R GGER GA G A D+ GAG G Sbjct: 216 SGAGAGGGGGGRVSDSNSQTPGGRGGNSAVGTGGERGGAGANGSSAADQTGGNPGAGGGG 275 Query: 2200 RDRKPFGDRPSREGGERRSFGAGGAGD----RDRKPFGAGSGD 2316 G + GG +G GG G + + +G GD Sbjct: 276 GGGNNSGSTTTGHGGNGGKYGGGGGGSGGHRTNARRYGGAGGD 318 Score = 35.0 bits (79), Expect = 0.39 Identities = 30/103 (29%), Positives = 36/103 (34%), Gaps = 17/103 (16%) Frame = +1 Query: 1669 SNNSGGDPRGFRAKDDRSDRPPREGG--------ERRSFGAG-----DRDRKPFGAGGGD 1809 S G G R D S P GG ER GA D+ GAGGG Sbjct: 216 SGAGAGGGGGGRVSDSNSQTPGGRGGNSAVGTGGERGGAGANGSSAADQTGGNPGAGGGG 275 Query: 1810 RDRKPFGDRPSREGGERRSFGAGGAGD----RDRKPFGAGGGD 1926 G + GG +G GG G + + +G GGD Sbjct: 276 GGGNNSGSTTTGHGGNGGKYGGGGGGSGGHRTNARRYGGAGGD 318 >ref|NP_059584.1|Int Length = 387 Score = 43.5 bits (101), Expect = 0.001 Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 1/201 (0%) Frame = +3 Query: 11460 DPASDVHPPMPGKRLPKAISVDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVG 11639 D A + P P + + + E R+++ ++++EF STG R S + Sbjct: 168 DKAPIIKVPQPKNKRIRWLEPHEAKRLIDECQEPL------KSVVEFALSTGLRRSNIIN 221 Query: 11640 LDVDDISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALDAYLVRGRP-LLAAKGKGTP 11816 L+ I +Q A I K + V L R L + + K T Sbjct: 222 LEWQQIDMQRKVAW--IHPEQSKSNHAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTK 279 Query: 11817 ALFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELL 11996 + R R A T +AA +A I +D H LRH++A+ L++ G + V+QE+ Sbjct: 280 PDGTKSPVVRKMRYDANTAWRAALKRAGI-EDFRFHDLRHTWASWLVQAGVPISVLQEMG 338 Query: 11997 GHASVTTTQVYTLVTADTLRE 12059 G S+ + Y + + L E Sbjct: 339 GWESIEMVRRYAHLAPNHLTE 359 >ref|NP_108680.1|integrase Length = 374 Score = 43.5 bits (101), Expect = 0.001 Identities = 23/50 (46%), Positives = 30/50 (60%) Frame = +3 Query: 11874 LKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQ 12023 L A K NI+ ++ H LRH+ A+ LL G D+ V + LGHASV TQ Sbjct: 300 LDHALKKLNISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQ 349 >ref|NP_813709.1|gp50 Length = 278 Score = 43.5 bits (101), Expect = 0.001 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 7/94 (7%) Frame = +1 Query: 11263 GMQTTSPRAVPPALAMSPGGTSPDSYRHCPTVPTAGQHSVSDPL------PGPSWRSAAS 11424 G TT P+ P A PG H P V G+ V++ PGP W +A Sbjct: 180 GGSTTKPKPKPKAYEPFPGVAWFKKNPHSPIVTAMGKRLVAEGCSAYKSGPGPQWTNADK 239 Query: 11425 ISSGRWKELRRRIPPAMSTRP-CPASGCPRPSAW 11523 S +W +R++ P ST P A G P S+W Sbjct: 240 ASYSKW---QRKLYPGASTAPGGDADGWPGKSSW 270 >ref|NP_777346.1|hypothetical protein Length = 395 Score = 43.5 bits (101), Expect = 0.001 Identities = 56/202 (27%), Positives = 83/202 (41%), Gaps = 12/202 (5%) Frame = +3 Query: 11460 DPASDVHPPMPGKRLP-KAISVDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAV 11636 +P V PP G P KA +EV R LEA+ G R L + +T R EA+ Sbjct: 157 NPMDAVDPPRGGAVRPAKAWKPEEVARFLEAS-----KGHRLYPLFALMLATRLRPGEAL 211 Query: 11637 GLDVDDISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALD----AYLVRGRPLLAAKG 11804 L +D + R G+ GS LD A L R L + Sbjct: 212 ALRWEDWEGDVLHVRHTLRR---DGTLGPAKTPGSVAPIYLDPDTQALLAWWRERLEEEK 268 Query: 11805 KGTP------ALFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGG 11966 TP +F +++G + + A +KA +++ ++PH LRH++ + L G Sbjct: 269 ASTPDWQDHGLMFPSSKGTPLEYNNFKRAFYALQEKAGVSR-ITPHGLRHTYTSLALRAG 327 Query: 11967 ADVRVVQELLGHASVT-TTQVY 12029 +VV L HA T T +VY Sbjct: 328 LPPKVVAARLRHADPTFTVKVY 349 >ref|NP_076573.1|integrase Length = 374 Score = 43.5 bits (101), Expect = 0.001 Identities = 23/50 (46%), Positives = 30/50 (60%) Frame = +3 Query: 11874 LKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQ 12023 L A K NI+ ++ H LRH+ A+ LL G D+ V + LGHASV TQ Sbjct: 300 LDHALKKLNISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQ 349 >ref|NP_795429.1|putative integrase Length = 362 Score = 43.1 bits (100), Expect = 0.001 Identities = 51/218 (23%), Positives = 81/218 (37%), Gaps = 12/218 (5%) Frame = +3 Query: 11445 GITTADPASDVHPPMPGKRLP---KAISVDEVTRILEAAGTDTATGLRDRALLEFLYSTG 11615 G +PA + PP ++ ++D++ + LE + + AL L TG Sbjct: 142 GYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFLELV--EKTDNIEKIALFRLLAFTG 199 Query: 11616 ARISEAVGLDVDDISLQADQAGPAIVR--------LFGKGSKERLVPLGSYGARALDAYL 11771 R E + L DD++ A+ R + S +RL+ L L Sbjct: 200 IRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEIL---- 255 Query: 11772 VRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATH 11951 L + T L + G I S K ++ H RH+ A+ Sbjct: 256 -----LELHETFPTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLPQITIHGFRHTHASL 310 Query: 11952 LLEGGADVRVVQELLGHASV-TTTQVYTLVTADTLREI 12062 L E G ++ VQ LGH + TT VYT +T + +I Sbjct: 311 LFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAIDDI 348 >ref|NP_720278.1|Int Length = 387 Score = 43.1 bits (100), Expect = 0.001 Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 6/206 (2%) Frame = +3 Query: 11460 DPASDVHPPMPGKRLPKAISVDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVG 11639 D A + P P + + + E R+++ ++++EF STG R S + Sbjct: 168 DKAPIIKVPQPKNKRIRWLEPHEAKRLIDECPEPL------KSVVEFALSTGLRRSNIIN 221 Query: 11640 LDVDDISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALDAYLVRGRPLL------AAK 11801 L+ I +Q A I K ++ V L R L + + + K Sbjct: 222 LEWQQIDMQRKVAW--IHPEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTK 279 Query: 11802 GKGTPALFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRV 11981 GT + + R R +AW ++A +A I +D H LRH++A+ L++ G + V Sbjct: 280 PDGTKSPVV--RKMRYDANTAW---RSALKRAGI-EDFRFHDLRHTWASWLVQAGVPISV 333 Query: 11982 VQELLGHASVTTTQVYTLVTADTLRE 12059 +QE+ G S+ + Y + + L E Sbjct: 334 LQEMGGWESIEMVRRYAHLAPNHLTE 359 >ref|NP_116524.1|integrase Length = 374 Score = 43.1 bits (100), Expect = 0.001 Identities = 23/50 (46%), Positives = 30/50 (60%) Frame = +3 Query: 11874 LKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQ 12023 L A K NI+ ++ H LRH+ A+ LL G D+ V + LGHASV TQ Sbjct: 300 LDHALKKLNISTPLTIHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQ 349 >ref|NP_695147.1|integrase Length = 391 Score = 42.4 bits (98), Expect = 0.002 Identities = 59/227 (25%), Positives = 90/227 (39%), Gaps = 28/227 (12%) Frame = +3 Query: 11442 EGITTADPASDVH----PPMPGKRLPKAISVDEVTRILEAAGTDTATGLRDRALLEFLYS 11609 EGI +PA+ ++ K K +S+D+ +I+ AA +++ + + Sbjct: 144 EGIIKRNPAARINLTGNKNREKKEEVKFMSLDDFKKIMNAAYRKFDPNSPSTSMIILMGA 203 Query: 11610 TGARISEAVGLDVDDISLQADQAGPAIVRLFGKGSKE-----------RLVPLGSYGARA 11756 TG R EA GL D + + + I + + K R + + S R Sbjct: 204 TGLRFEEADGLTWDCVDFK--NSSITINKTWDYRHKHDFGPTKNPQSMRTIKVDSTTMRV 261 Query: 11757 LDAY--------LVRG----RPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAADKAN 11900 L A LVR R L+ +K G P L NA + + A Sbjct: 262 LKALHAHYAQIKLVRHDWNKRKLVFSKSDGIP-LSNNAINKMLRSLCVQNAVVARNSSGV 320 Query: 11901 ITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTT-QVYTLV 12038 I K + H LRH+ A+ LL G D+ V + LGH + TT YT V Sbjct: 321 IQKWYTCHALRHTHASLLLYEGRDISYVSKRLGHKDIMTTYNTYTHV 367 >ref|YP_025047.1|putative integrase Length = 389 Score = 42.4 bits (98), Expect = 0.002 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 2/144 (1%) Frame = +3 Query: 11595 EFLYSTGARISEAVGLDVDDISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALDAYLV 11774 + LY TG + ++ D S++ + P+++ L K +E+ G R D ++ Sbjct: 243 DHLYGTGFKPTKT------DSSVRDIEISPSVIELLNKIHQEQAASYLRTGYRDEDQMIM 296 Query: 11775 RGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAADKANI--TKDVSPHTLRHSFAT 11948 R + R I+ + L +KA I K ++ H LRHS + Sbjct: 297 R-----------------DPRHNVITDSACNKALHVIQNKAEIPENKQITFHGLRHSHVS 339 Query: 11949 HLLEGGADVRVVQELLGHASVTTT 12020 +L+ G D+ + + LGH+ VT T Sbjct: 340 YLISKGVDIYYISKRLGHSDVTIT 363 >ref|NP_052278.1|Int Length = 336 Score = 42.0 bits (97), Expect = 0.003 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = +3 Query: 11922 HTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLRE 12059 H LRH+FA+H + G ++ V+Q +LGH + T Y D L + Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLED 322 >ref|NP_695029.1|Integrase Length = 374 Score = 42.0 bits (97), Expect = 0.003 Identities = 22/50 (44%), Positives = 30/50 (60%) Frame = +3 Query: 11874 LKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQ 12023 L+ A K I+ ++ H LRH+ A+ LL G D+ V + LGHASV TQ Sbjct: 300 LEHALKKLKISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQ 349 >ref|NP_996675.1|integrase Length = 374 Score = 42.0 bits (97), Expect = 0.003 Identities = 22/50 (44%), Positives = 30/50 (60%) Frame = +3 Query: 11874 LKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQ 12023 L+ A K I+ ++ H LRH+ A+ LL G D+ V + LGHASV TQ Sbjct: 300 LEHALKKLKISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQ 349 >ref|NP_624303.1|integrase fragment Length = 112 Score = 42.0 bits (97), Expect = 0.003 Identities = 22/51 (43%), Positives = 31/51 (60%) Frame = +3 Query: 11907 KDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLRE 12059 K+V+ H LRHS A++LL G ++ V E LGH++V T+ TLRE Sbjct: 49 KNVTFHALRHSHASYLLSKGVSIQYVSERLGHSNVGITENVYSHLLKTLRE 99 >ref|NP_599058.1|integrase Length = 387 Score = 41.6 bits (96), Expect = 0.004 Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 1/201 (0%) Frame = +3 Query: 11460 DPASDVHPPMPGKRLPKAISVDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVG 11639 D A + P P + + + E R+++ ++++EF +TG R S + Sbjct: 168 DKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPL------KSVVEFALATGLRRSNIIN 221 Query: 11640 LDVDDISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALDAYLVRG-RPLLAAKGKGTP 11816 L+ I +Q A I K ++ V L R L + R + K T Sbjct: 222 LEWQQIDMQRRVAW--INPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTK 279 Query: 11817 ALFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELL 11996 A R R A T KAA +A I D H LRH++A+ L + G + V+QE+ Sbjct: 280 PDGTKAPTVREMRYDANTAWKAALRRAGID-DFRFHDLRHTWASWLGQAGVPLSVLQEMG 338 Query: 11997 GHASVTTTQVYTLVTADTLRE 12059 G S+ + Y + + L E Sbjct: 339 GWESIEMVRRYAHLAPNHLTE 359 >ref|NP_817384.1|gp46 Length = 436 Score = 41.6 bits (96), Expect = 0.004 Identities = 25/73 (34%), Positives = 35/73 (47%) Frame = +3 Query: 11850 SRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVY 12029 S W + AA T+ + PH RH+ +T L G D + E+LGHASV ++Y Sbjct: 346 SDYDVWRGVFRAAGVIGPTESLPPHNSRHTTSTLLRAAGVDEQTRMEILGHASVDAQRIY 405 Query: 12030 TLVTADTLREIYA 12068 AD R + A Sbjct: 406 --AHADRARHLEA 416 >ref|NP_536807.1|integrase Length = 337 Score = 41.6 bits (96), Expect = 0.004 Identities = 15/36 (41%), Positives = 26/36 (72%) Frame = +3 Query: 11922 HTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVY 12029 H LRH+FA+H + G ++ V++E+LGH+++ T Y Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRY 315 >ref|NP_043466.1|integrase Length = 337 Score = 41.6 bits (96), Expect = 0.004 Identities = 15/36 (41%), Positives = 26/36 (72%) Frame = +3 Query: 11922 HTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVY 12029 H LRH+FA+H + G ++ V++E+LGH+++ T Y Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRY 315 >ref|NP_076696.1|integrase Length = 377 Score = 41.6 bits (96), Expect = 0.004 Identities = 22/69 (31%), Positives = 36/69 (52%) Frame = +3 Query: 11814 PALFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQEL 11993 P +F N + G I+ S L+ K K ++ H LRH+ A+ +L G ++ V + Sbjct: 280 PFVFYNIKNGLITNNSLNKQLRNMCKKLGFKKIITCHGLRHTHASTMLYKGINILYVSKR 339 Query: 11994 LGHASVTTT 12020 LGH+S+ T Sbjct: 340 LGHSSLNVT 348 >ref|NP_150133.1|integrase Length = 375 Score = 41.2 bits (95), Expect = 0.005 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Frame = +3 Query: 11871 ILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASV-TTTQVYTLVTAD 12047 ILK +A I K++S H RHS + L E G ++ + + +GH++ T ++Y+ T D Sbjct: 303 ILKKYGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTTED 362 >ref|NP_511007.1|integrase Length = 384 Score = 41.2 bits (95), Expect = 0.005 Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 10/169 (5%) Frame = +3 Query: 11583 RALLEFLYSTGARISEAVGLDVDDI-----SLQADQAGP---AIVRLFGKGSKERLVPLG 11738 RA++ TG R E + L DI S+ ++A + K K R++ + Sbjct: 187 RAVIFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTFIDTKTKKSRVIYID 246 Query: 11739 SYGARALDAYLVRGRPLLAAKGKGTPA--LFLNARGGRISRQSAWTILKAAADKANITKD 11912 + A+ L +YL + P LF+ + S LK N ++ Sbjct: 247 NSTAQYLHSYLNWHTDYMKEHAIKNPLMLLFITYHNKPVDNASCNKALKKICSTIN-SEP 305 Query: 11913 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLRE 12059 V+ H LRH+ +E G D+ V + LGH + TT Y + LR+ Sbjct: 306 VTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLSSNLRQ 354 >ref|NP_899408.1|NMN adenylyl tranferase Length = 341 Score = 41.2 bits (95), Expect = 0.005 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Frame = +1 Query: 12184 VLLGLKKTGFGRGKIVGLGGHVEPGESHAEAACREVQEESGVTVLERDLRPAGVVEFVF- 12360 VLL +K G+G + GGH E+ +AA RE+QEE+ + V E+ LR + V E +F Sbjct: 214 VLLVERKFNPGKGCLALPGGHKHEKETFLDAAIRELQEETNIKVPEKVLRGSLVGEKMFD 273 Query: 12361 -PHRPEWNMHTTLFTTREWHGEPAES-PEIDP 12450 P+R + T+ + H P + P++ P Sbjct: 274 NPNRSYPHTRITMAYHLKVHPNPDNTFPKVKP 305 >ref|NP_438114.1|integrase-like protein Length = 365 Score = 40.8 bits (94), Expect = 0.007 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 8/62 (12%) Frame = +3 Query: 11907 KDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVT-TTQVYTLVT-------ADTLREI 12062 K ++PH RH+ A+ L E G ++ QE LGHA + T +YT ++ AD L E+ Sbjct: 303 KRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLSKKSKDNVADKLAEL 362 Query: 12063 YA 12068 A Sbjct: 363 VA 364 >ref|NP_795541.1|putative integrase Length = 384 Score = 40.8 bits (94), Expect = 0.007 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 8/62 (12%) Frame = +3 Query: 11907 KDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVT-TTQVYTLVT-------ADTLREI 12062 K ++PH RH+ A+ L E G ++ QE LGHA + T +YT ++ AD L E+ Sbjct: 322 KRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLSKKSKDNVADKLAEL 381 Query: 12063 YA 12068 A Sbjct: 382 VA 383 >ref|NP_510895.1|similar to phage phi 11 integrase Length = 349 Score = 40.8 bits (94), Expect = 0.007 Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 10/197 (5%) Frame = +3 Query: 11460 DPASDVHPPMPGKRLPKAISVDEVT-RILEAAGTDTATGLRDRALLEFLYSTGARISEAV 11636 DP + P K PK + +E RI + D R L ++ TG RI EA+ Sbjct: 146 DPTISIKPIPRVKPKPKFMMREEFEKRIKDIEEQDY------RELFTLMFYTGLRIGEAM 199 Query: 11637 GLDVDD---------ISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALDAYLVRGRPL 11789 L D I+ D + I S E +VPL + L R + L Sbjct: 200 ALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDSSEDIVPLPKFINTMLTERHQREKEL 259 Query: 11790 LAAKGKGTPALFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGA 11969 + + +F GG + ++ ++ KA ++ H LRHS+A++L G Sbjct: 260 NKYFDERSYFIF----GGMAPKH--YSHVQKKFQKAFPHYNI--HALRHSYASYLANNGV 311 Query: 11970 DVRVVQELLGHASVTTT 12020 D+ V+Q L+ HA +T T Sbjct: 312 DIFVLQSLMRHAQITET 328 >ref|NP_795660.1|putative integrase Length = 362 Score = 40.4 bits (93), Expect = 0.009 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Frame = +3 Query: 11874 LKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVT-TTQVYT 12032 LK ++ ++ K ++PH RH+ A+ L E G ++ QE LGHA ++ T +YT Sbjct: 290 LKRTVERHHLKK-INPHGFRHTHASLLFEAGVPAKLAQERLGHAKISITMDLYT 342 >ref|NP_663635.1|putative integrase Length = 359 Score = 40.4 bits (93), Expect = 0.009 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 10/162 (6%) Frame = +3 Query: 11586 ALLEFLYSTGARISEAVGLDVDDISLQADQAGPAIVR-------LFGKGSKERLVPLGSY 11744 AL L TG R E + L+ D AI L K + RL+ L Sbjct: 192 ALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANSNRLLSLDEK 251 Query: 11745 GARALDAYLVRGRPLLAAKGKGTPALFLNARGGRIS--RQSAWTILKAAADKANITKDVS 11918 + LD L + +F + GG +S + W +L+ +K + + Sbjct: 252 TCKILDE--------LHQTYPESTRIFESENGGMLSPSKPRKW-LLEITKEKE--IEPIR 300 Query: 11919 PHTLRHSFATHLLEGGADVRVVQELLGHASV-TTTQVYTLVT 12041 H RH+ A+ L E G ++ VQ LGHA + TT +YT +T Sbjct: 301 IHAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHIT 342 >ref|NP_958506.1|putative integrase Length = 391 Score = 40.4 bits (93), Expect = 0.009 Identities = 54/200 (27%), Positives = 84/200 (42%), Gaps = 30/200 (15%) Frame = +3 Query: 11523 DEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLQADQA-------- 11678 DE+ + LE A GL + L +TG R SEA+ L DI+L A Sbjct: 183 DELNQFLEVAKD---YGLVPYTYFKLLSATGLRKSEALALTWSDINLTAGTLSVNKTLAY 239 Query: 11679 ---GPAIVRLFGKGSKERLVPLGSYGARALDAYLVRGRPLLAAKGKGTPALFLNARGG-- 11843 G I++ +R++P+ S G + + R + +++ + LF +G Sbjct: 240 GLNGKTIIQPPKSPKSKRILPI-SDGLKEVLIDYKRKQKIISKE------LFHTNKGTYL 292 Query: 11844 RISRQSAW---TILKAAADKANITK------------DVSPHTLRHSFATHLL-EGGADV 11975 RIS+ W K +KA K ++ H RH+FAT L+ E Sbjct: 293 RISKPDQWLKSIYAKDHEEKAEYAKKYNLKEPQPDLRHITVHGFRHTFATLLIAETNVKP 352 Query: 11976 RVVQELLGHASV-TTTQVYT 12032 + VQ LLGH ++ T +YT Sbjct: 353 KTVQMLLGHENIQMTLDIYT 372 >ref|NP_852580.1|DNA integration Length = 180 Score = 40.4 bits (93), Expect = 0.009 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 3/163 (1%) Frame = +3 Query: 11574 LRDRALLEFLYSTGARISEAVGLDVDDISLQADQAGPAIVRLFGKGSKERLVPLGSYGAR 11753 LR+ L +TG RIS+ + L V D+ G I K K++ + + + R Sbjct: 25 LRNYILFIMGINTGLRISDILKLKVGDVK------GSHISMREEKTGKQKRIQITAALKR 78 Query: 11754 ALDAYLVRGRPLLAAKGKGTPALFLNARGGR---ISRQSAWTILKAAADKANITKDVSPH 11924 L ++ + + L +R GR I R A+ IL AA + ++ H Sbjct: 79 ELKWFI---------EEREDNEYLLQSRQGRNRPIGRSMAYKILSGAAADFGLD-EIGTH 128 Query: 11925 TLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTL 12053 TLR ++ H+ ++ ++ E+ H+S T Y V D + Sbjct: 129 TLRKTYGYHMYMQTKNIALLMEIFNHSSEKVTLRYIGVNQDAM 171 >ref|NP_076801.1|integrase Length = 382 Score = 40.4 bits (93), Expect = 0.009 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%) Frame = +3 Query: 11820 LFLNARGGRISRQSAWTILKAAAD--KANITKDVSPHTLRHSFATHLLEGGADVRVVQEL 11993 +F++ RG + S +K A K+ I K++S H RH+ ++L E ++ + + Sbjct: 290 IFVSKRGIPLQTNSFNLAIKRANSRLKSPINKNLSSHIFRHTLISYLAENNVPLKAIVDR 349 Query: 11994 LGH--ASVTTTQVYTLVT 12041 +GH TTT +YT VT Sbjct: 350 VGHKDGGKTTTAIYTHVT 367 >ref|NP_076635.1|integrase Length = 359 Score = 40.4 bits (93), Expect = 0.009 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 10/162 (6%) Frame = +3 Query: 11586 ALLEFLYSTGARISEAVGLDVDDISLQADQAGPAIVR-------LFGKGSKERLVPLGSY 11744 AL L TG R E + L+ D AI L K + RL+ L Sbjct: 192 ALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANSNRLLSLDEK 251 Query: 11745 GARALDAYLVRGRPLLAAKGKGTPALFLNARGGRIS--RQSAWTILKAAADKANITKDVS 11918 + LD L + +F + GG +S + W +L+ +K + + Sbjct: 252 TCKILDE--------LHQTYPESTRIFESENGGMLSPSKPRKW-LLEITKEKE--IEPIR 300 Query: 11919 PHTLRHSFATHLLEGGADVRVVQELLGHASV-TTTQVYTLVT 12041 H RH+ A+ L E G ++ VQ LGHA + TT +YT +T Sbjct: 301 IHAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHIT 342 >ref|NP_061591.2|integrase Length = 348 Score = 39.7 bits (91), Expect = 0.016 Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Frame = +3 Query: 11898 NITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVT-TTQVYTLVTAD 12047 ++ ++ H LRHS+A++L+ G D+ ++ EL+ H+++T T Q Y+ + D Sbjct: 288 SVFSNLKIHHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTD 338 >ref|NP_050999.1|P38 Length = 390 Score = 39.7 bits (91), Expect = 0.016 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 6/165 (3%) Frame = +3 Query: 11583 RALLEFLYSTGARISEAVGLDVDDISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALD 11762 R+ +EF +TG R S + L I +Q A I K K V L L Sbjct: 203 RSTVEFALATGLRRSNIINLAWSQIDMQRKVAW--IEPENSKSGKAIGVALNDTACCILT 260 Query: 11763 AYL------VRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAADKANITKDVSPH 11924 L V + A + G+ + R R+ +AW +AA +A I ++ H Sbjct: 261 RQLGNHQKWVFVHTMSAKRSDGSQTNSI--RKMRVDSNTAW---RAALKRAGI-ENFRFH 314 Query: 11925 TLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLRE 12059 LRH++A+ L++ G + V+QE+ G SV + Y + ++ L E Sbjct: 315 DLRHTWASWLIQSGVPLSVLQEMGGWESVEMVRRYAHLASNHLTE 359 >ref|NP_803254.1|integrase Length = 348 Score = 39.3 bits (90), Expect = 0.021 Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%) Frame = +3 Query: 11922 HTLRHSFATHLLEGGADVRVVQELLGHASVT-TTQVYTLVTAD 12047 H LRHS+A++L+ G D+ ++ EL+ H+++T T Q Y+ + D Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTD 338 >ref|NP_852561.1|DNA integration Length = 369 Score = 39.3 bits (90), Expect = 0.021 Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 11/162 (6%) Frame = +3 Query: 11607 STGARISEAVGLDVDDISL--------QADQAGPAIVRLFGKGSKERLVPLGSYGARALD 11762 +TG R+ E +GL DI Q I + S +R +P+ + AL Sbjct: 197 TTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPNETIAALK 256 Query: 11763 AY--LVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRH 11936 + L+ L L GRI +++ + K++ H LRH Sbjct: 257 KHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHKVGIKEIKFHDLRH 316 Query: 11937 SFATHLLEGGADVRVVQELLGHASVT-TTQVYTLVTADTLRE 12059 + AT LL+ G + +++ E LGH ++ T VY+ V + E Sbjct: 317 THATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEE 358 >ref|YP_195258.1|hypothetical protein Length = 582 Score = 38.9 bits (89), Expect = 0.027 Identities = 46/158 (29%), Positives = 54/158 (34%), Gaps = 20/158 (12%) Frame = +1 Query: 1666 ASNNSGGDPRGFRAKDDRSDRPPREGGERRSFGAGDRDRKPFGAGGGDRDRKPFGDRPSR 1845 +SN S G GF + GG S GAG K G G D + Sbjct: 62 SSNRSWGSWVGFTGSNGPGGSSAVVGGPGGSNGAG----KNGDGGRGGNDGESGWSGCGA 117 Query: 1846 EGGERRSFG--------AGGAGDRDRKPFGAGGGDRDRKPFGDR----------PSR--E 1965 GG F AGG G F GG +R GD PS + Sbjct: 118 GGGAATVFSLAGSDVIVAGGGGGGGGGAFSCGGPERPGARGGDAGNWVNTTSISPSNGGQ 177 Query: 1966 GGERRSFGAGGAGDRDRKPFGAGGAGDRDRKPFGAGSG 2079 GG++ G GG G P G GG +D GAG G Sbjct: 178 GGDKSGDGPGGGGGGGGAPGGGGGGVGQDCSG-GAGGG 214 Score = 38.1 bits (87), Expect = 0.046 Identities = 49/173 (28%), Positives = 56/173 (32%), Gaps = 27/173 (15%) Frame = +1 Query: 1876 GGAGDRDRKPFGAGGGDRDRKPFGDRPSREG-------GERRSFGAGGAGDRDRKPFGAG 2034 GG G D G G GD F S G S G GG+ P G+ Sbjct: 34 GGTGGADSGGPGGGYGDGRYGLFSIPSSSSNRSWGSWVGFTGSNGPGGSSAVVGGPGGSN 93 Query: 2035 GAGDRDRKPFGAGSGDRDRKSFGDRPSREGGERRSFG--------AGGAGDRDRKPFGAG 2190 GAG K G G D +S GG F AGG G F G Sbjct: 94 GAG----KNGDGGRGGNDGESGWSGCGAGGGAATVFSLAGSDVIVAGGGGGGGGGAFSCG 149 Query: 2191 SGDRDRKPFGDR----------PSR--EGGERRSFGAGGAGDRDRKPFGAGSG 2313 +R GD PS +GG++ G GG G P G G G Sbjct: 150 GPERPGARGGDAGNWVNTTSISPSNGGQGGDKSGDGPGGGGGGGGAPGGGGGG 202 >ref|YP_024421.1|Hypothetical protein Length = 741 Score = 38.5 bits (88), Expect = 0.035 Identities = 47/203 (23%), Positives = 71/203 (34%), Gaps = 12/203 (5%) Frame = +1 Query: 1741 GGERRSFGAGDRDRKPFGAGGGDRDRKPFGDRPSREGGERRSF--GAGGAGDRDRKPFGA 1914 GG R+ G D G GGG + GG+ + G GG G +R Sbjct: 512 GGSGRTAGGNDS----IGGGGGGGAALVSVLSSNAIGGQTATIVVGGGGGGAANRAIAAG 567 Query: 1915 GGGDRDRKPFGD-----RPSREG--GERRSFGAGGAGDRDRKPFGAG---GAGDRDRKPF 2064 GG+ G R G G + + +GG G + GAG +G+ Sbjct: 568 NGGNSSVSGAGIVGLSWTGGRAGANGVQGYYASGGNGGNNSSNVGAGAGASSGNAASGVS 627 Query: 2065 GAGSGDRDRKSFGDRPSREGGERRSFGAGGAGDRDRKPFGAGSGDRDRKPFGDRPSREGG 2244 G G G + G R GG + G G + + + G G G + + + +GG Sbjct: 628 GGGGGGTGPGNGGWRSGNGGGS--NAGVGTSNGNNAQAAGGGGGGNSAVWWDNAAAGKGG 685 Query: 2245 ERRSFGAGGAGDRDRKPFGAGSG 2313 + + G+ G G G Sbjct: 686 DGTASSGASGGNATGNGNGGGGG 708 >ref|YP_164382.1|integrase Length = 369 Score = 38.5 bits (88), Expect = 0.035 Identities = 23/58 (39%), Positives = 33/58 (56%) Frame = +3 Query: 11847 ISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTT 12020 IS +A +LK+ + I + +S H LRH+ A+ LL G + V E LGHA + TT Sbjct: 285 ISNGNANKLLKSLLGELKI-EPISMHGLRHTHASVLLYKGVSIYYVSERLGHADIETT 341 >ref|NP_835517.1|integrase Length = 345 Score = 38.1 bits (87), Expect = 0.046 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Frame = +3 Query: 11838 GGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVT- 12014 G I+ Q+ LK+A NI ++ H LRH+ ++LL G + + + LGH ++ Sbjct: 260 GSIINLQAINNALKSACRVNNIPI-ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAI 318 Query: 12015 TTQVYTLVTADTLRE 12059 TT VY+ + + E Sbjct: 319 TTSVYSHLLEEKFNE 333 >ref|NP_803356.1|integrase Length = 345 Score = 38.1 bits (87), Expect = 0.046 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Frame = +3 Query: 11838 GGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVT- 12014 G I+ Q+ LK+A NI ++ H LRH+ ++LL G + + + LGH ++ Sbjct: 260 GSIINLQAINNALKSACRVNNIPI-ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAI 318 Query: 12015 TTQVYTLVTADTLRE 12059 TT VY+ + + E Sbjct: 319 TTSVYSHLLEEKFNE 333 >ref|NP_958556.1|putative integrase Length = 391 Score = 37.7 bits (86), Expect = 0.060 Identities = 52/202 (25%), Positives = 81/202 (40%), Gaps = 30/202 (14%) Frame = +3 Query: 11523 DEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLQADQAGPAIVRLF 11702 +E+ + LE A GL + L +TG R SEA+ L DI L+A + Sbjct: 183 EELNQFLEVA---KEYGLVQYTYFKLLSATGLRKSEALALTWQDIDLKAGTLSINKTLAY 239 Query: 11703 GKGSK-----------ERLVPLGSYGARALDAYLVRGRPLLAAKGKGTPALFLNARGG-- 11843 G +K +R++P+ L Y + + + + LF +G Sbjct: 240 GLDNKTIIQPPKSPKSKRILPISDSLKEVLIDYKQKQKII-------SNKLFHTIKGTYL 292 Query: 11844 RISRQSAWTILKAAAD--------KANITKDVSP-------HTLRHSFATHLL-EGGADV 11975 ++S+ W A D K + K+ P H RH+FAT L+ E Sbjct: 293 KMSKPDQWLKSIYAKDHEEKVKYAKTHNLKEPQPDLRHITVHGFRHTFATLLIAETNVKP 352 Query: 11976 RVVQELLGHASV-TTTQVYTLV 12038 + VQ LLGH ++ T +YT V Sbjct: 353 KTVQMLLGHENIQMTLDIYTHV 374 >ref|NP_852723.1|putative integrase Length = 348 Score = 37.7 bits (86), Expect = 0.060 Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 10/168 (5%) Frame = +3 Query: 11583 RALLEFLYSTGARISEAVGLDVDDISLQADQA---------GPAI-VRLFGKGSKERLVP 11732 + +++F TG R+S L I L QA G +I V L K + V Sbjct: 181 KPIVQFAILTGLRMSNITQLKWSQIDLSKRQAWINSEQSKTGNSIGVPLNDKAIE---VI 237 Query: 11733 LGSYGARALDAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAADKANITKD 11912 + +G + + +G+P+ A K +AA +A I KD Sbjct: 238 VSQFGKHKENVFTYKGKPVRIANTKA---------------------FRAALQRAGI-KD 275 Query: 11913 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLR 12056 H LRH++AT + G + V+QEL G + T + Y ++ + L+ Sbjct: 276 FRFHDLRHTWATRHIMSGTPLYVLQELGGWSKSDTVRKYAHLSVEHLQ 323 >ref|NP_817472.1|gp22 Length = 1576 Score = 37.4 bits (85), Expect = 0.078 Identities = 53/193 (27%), Positives = 68/193 (35%), Gaps = 30/193 (15%) Frame = +1 Query: 1666 ASNNSGGDPRGFRAKDDRSDRPPREGGERRSFGAGDRDRK--------PFGAGGGDRDRK 1821 A SGG P+ R + P G +G+G+ R+ P G G G Sbjct: 1291 AEGGSGGPPQPMRPLPLITHTPDATG----QYGSGNASRQRRGLPIVPPAGMGIGIPGIG 1346 Query: 1822 PFGDRPSREGGERRSFGA------GGAGDRDRKPFGAGGGDRDRKPFG---------DRP 1956 G P + G G GG G P G GG + P G RP Sbjct: 1347 APGQAPGQVGPFPTPNGINGPTLPGGPGAPPGAPPGVPGGQTPKPPPGASGAATPGAARP 1406 Query: 1957 -SREGGERRSFGAGGAGDRDRKPFG----AGGAGDRDRKPFGAGSGDRDRKSF--GDRPS 2115 S GG++ S +GG G P G AG A F GSG +K +R Sbjct: 1407 QSSTGGQQPSGSSGGGGGLGFTPGGAIDMAGQAAAAAANAFAPGSGIAVQKGMEVANRAM 1466 Query: 2116 REGGERRSFGAGG 2154 + GG+ GA G Sbjct: 1467 KFGGQLIGIGAEG 1479 >ref|NP_075300.1|gp33 Length = 267 Score = 36.6 bits (83), Expect = 0.13 Identities = 51/190 (26%), Positives = 63/190 (33%), Gaps = 10/190 (5%) Frame = +1 Query: 1741 GGERRSFGAGDRDRKPFGAGGGDRDRKPFGDRPSREGGERRSFGAGGAGDRDRKPFGAGG 1920 GG R +G R G GGG DR + R S G GGAG + G+ Sbjct: 74 GGSGRRANSGYRYGGGGGGGGGYIDRV-WIPRASLGSTFTLIRGLGGAGGA--RAAGSSN 130 Query: 1921 GDRDRKPFGDRPSREGGERRSFGAGGAGDR--DRKPFGAGGAGDR------DRKPFGAGS 2076 G+ P G G + G AG + G+GGAG + G Sbjct: 131 GNNGA-PGGSTVFSSGSVSLTASGGAAGVKGTSSSASGSGGAGGTTSISGVSATGYTGGK 189 Query: 2077 GDRDRKSFGDRPSREGGERRSFGAGGAGDRDRKPFGAGSGDRDRKPFGDRPSREGGERRS 2256 G S SR G G GG + F GS P G+ G + Sbjct: 190 GGNGGSSPSSGQSRTDGSGAGGGGGGGVRSNDNSFSGGSNGTSSGPAGNGGRGTDGSINT 249 Query: 2257 FG--AGGAGD 2280 G AG GD Sbjct: 250 GGSNAGSGGD 259 Score = 35.8 bits (81), Expect = 0.23 Identities = 42/158 (26%), Positives = 58/158 (36%), Gaps = 8/158 (5%) Frame = +1 Query: 1870 GAGGAGDRDRKPFGAGGGDRDRKPFGDR---PSREGGERRSF--GAGGAGDRDRKPFGAG 2034 G GG+G R + GGG + DR P G + G GGAG AG Sbjct: 72 GGGGSGRRANSGYRYGGGGGGGGGYIDRVWIPRASLGSTFTLIRGLGGAGGAR----AAG 127 Query: 2035 GAGDRDRKPFGA---GSGDRDRKSFGDRPSREGGERRSFGAGGAGDRDRKPFGAGSGDRD 2205 + + P G+ SG + G +G + G+GGAG + +G Sbjct: 128 SSNGNNGAPGGSTVFSSGSVSLTASGGAAGVKGTSSSASGSGGAGGTTSISGVSATGYTG 187 Query: 2206 RKPFGDRPSREGGERRSFGAGGAGDRDRKPFGAGSGDR 2319 K S G+ R+ G+G G G G G R Sbjct: 188 GKGGNGGSSPSSGQSRTDGSGAGG-------GGGGGVR 218 >ref|NP_944303.1|conserved phage mega protein Length = 4602 Score = 36.2 bits (82), Expect = 0.17 Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 6/89 (6%) Frame = +1 Query: 2035 GAGDRDRKPFGAG--SGDRDRKSFGDRPSREGGERRSFGAGGAGDRDRKPFGAGS----G 2196 GA D+ GAG S D + G P + G GGA R+R+ AG G Sbjct: 1470 GAADQSAPEQGAGRVSPDEGGRDAGRVPEQPSGRDAGGDRGGAAKRNRQSRDAGEPAVRG 1529 Query: 2197 DRDRKPFGDRPSREGGERRSFGAGGAGDR 2283 GD+ RE G GAG DR Sbjct: 1530 AAAEADAGDQHGREVGRGDRAGAGDGNDR 1558 >ref|NP_938251.1|putative tail component protein Length = 514 Score = 36.2 bits (82), Expect = 0.17 Identities = 21/57 (36%), Positives = 24/57 (42%) Frame = -3 Query: 20346 SWGGRTRPWILPPRTWSSASSSPTRWWAPWKSRC*VPCSWARRPRRTNAASNWACRR 20176 S G PW R W+S + +R WAPWK W R P S WA RR Sbjct: 452 SLGPPNWPWTPIARQWTSGRARSSRTWAPWKPLGRPLPGWPRAP--GTKCSAWAGRR 506 >ref|NP_680502.1|integrase Length = 385 Score = 35.8 bits (81), Expect = 0.23 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%) Frame = +3 Query: 11922 HTLRHSFATHLLEGGADVRVVQELLGHASV-TTTQVYT 12032 H LRH+ ++LL G D++ V LGH +V TT++YT Sbjct: 330 HGLRHTHGSYLLYKGLDIQYVSHRLGHENVGITTKIYT 367 >ref|NP_817998.1|gp25 Length = 941 Score = 35.0 bits (79), Expect = 0.39 Identities = 57/197 (28%), Positives = 68/197 (34%), Gaps = 15/197 (7%) Frame = +1 Query: 1735 REGGERRSFGAGDRDRKPFGAGGGDRDRKPFGDR--PSREGGERRSF--GAGGAGDR--- 1893 R GG G+G R + GGG + D P G S G GGAG Sbjct: 736 RLGGAGAGGGSGRRSNSGYRYGGGGGGGGAYIDVLIPVEAIGPTYSTTRGLGGAGGAKAY 795 Query: 1894 --DRKPFGAGGGDRDRKPFGDRPSREGGERRSFGAGGAGDRDRKPFGAGGAGDRDRKPFG 2067 D K GA GG G + GG+ G + R G D F Sbjct: 796 SGDGKD-GADGGASTFTSGGVSLTANGGQGGKKGTNSSSSGARGLGGTAVITGLDATGFS 854 Query: 2068 AGSGDRDRKSFGDRPSREGGERRSFGAGGAG-----DRDRKPFGAGSGDRDRKPFGDRPS 2232 G+G S + SR G GAGG G D G +G D P+ Sbjct: 855 GGNGGNGGSSPTNGQSRTNGA----GAGGKGGGGKLSNDNTISGGNNGT------SDGPA 904 Query: 2233 REGGERRSFG-AGGAGD 2280 GG FG AGG+GD Sbjct: 905 GNGG----FGSAGGSGD 917 >ref|NP_861819.1|NudE nudix hydrolase Length = 152 Score = 35.0 bits (79), Expect = 0.39 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Frame = +1 Query: 12241 GHVEPGESHAEAACREVQEESGVTVLERDLRPAGVVEFVFPHRPE-WNMHTTLFT 12402 G VEPGES EAA RE +EE+G T + PA + + H + N+H L+T Sbjct: 47 GRVEPGESPIEAAIRECEEETGFTQYD----PAFLKDLGEHHYSDNKNIHLFLYT 97 >ref|NP_076780.1|integrase Length = 399 Score = 35.0 bits (79), Expect = 0.39 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 9/155 (5%) Frame = +3 Query: 11583 RALLEFLYSTGARISEAVGLDVDDISLQAD--QAGPAIVRLFG------KGSKERLVPLG 11738 +ALL L ++G RI EA+ L DI+ Q VR F R++ + Sbjct: 221 KALLRLLVASGLRIGEAMALSWSDINFQNQTVSVSKTTVRRFQIQDTPKSNKSNRIISID 280 Query: 11739 SYGARALDA-YLVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAADKANITKDV 11915 L + Y + + + +F GG + + L A + + Sbjct: 281 DKAIYVLKSWYFFQKKHFMKLGNPQQNLVFPKIEGGVMDYHNLIYKLNNIIKNAELPL-L 339 Query: 11916 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTT 12020 S H R S A+ L +V+QE LGH+ + T Sbjct: 340 SFHGFRRSHASLCLNAEMSYKVIQERLGHSKLQLT 374 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 128,973,470 Number of Sequences: 14420 Number of extensions: 2828682 Number of successful extensions: 11267 Number of sequences better than 0.5: 80 Number of HSP's better than 0.5 without gapping: 5238 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11099 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 12323794275 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig13 (34,257 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_445672.1|putative helicase 80 1e-14 ref|NP_817947.1|gp96 56 3e-07 ref|NP_720276.1|GtrB 47 1e-04 ref|NP_599056.1|bactoprenol glucosyltransferase 46 3e-04 ref|YP_006358.1|GtrB 44 8e-04 ref|NP_803852.1|ORF286 44 0.001 ref|NP_059582.1|O-antigen conversion protein 44 0.001 ref|NP_944130.1|UvsW RNA-DNA and DNA-DNA helicase 43 0.002 ref|NP_852495.1|DNA 42 0.003 ref|YP_164321.1|hypothetical protein 38 0.058 ref|NP_817695.1|gp17 37 0.13 ref|NP_958267.1|hypothetical protein 37 0.17 ref|NP_958295.1|hypothetical protein 36 0.29 ref|NP_817716.1|gp38 35 0.37 ref|NP_542287.1|unknown 35 0.49 ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase access... 35 0.49 >ref|NP_445672.1|putative helicase Length = 601 Score = 80.1 bits (196), Expect = 1e-14 Identities = 53/213 (24%), Positives = 108/213 (50%), Gaps = 21/213 (9%) Frame = +2 Query: 14129 LDFELDDFQRQACLS-LQQGRGVLVAAPTGAGKTIVGEFAIYLALQRALKAFYTTPIKAL 14305 + +L++FQ++A S L + +L+ APTG GK+ + A+ +A++ + YT P++AL Sbjct: 4 MSIQLNEFQKKALQSFLMSDKNLLITAPTGTGKSFL---AMLMAMETKSRVVYTVPLRAL 60 Query: 14306 SNQKYSELADKYGPENVGLLTGDTSINGDAPVVVMTTEVLRN-----------MLYADSD 14452 + Q + +K P +NG A V +T+EV Y +D Sbjct: 61 ALQLNDDFHNKVAP----------LVNGYADSVALTSEVYEEDPENLEERVIFTTYEKAD 110 Query: 14453 TL--------DDLGFVVMDEVHYLADRFRGAVWEEVIIHLPSE-VQVASLSATVSNAEEF 14605 + D + +++DE+H + D+ RG E +I + +E +++ ++SAT+ + + Sbjct: 111 AIFRRHYPWTDRIETLIIDEIHNIGDKERGKAIENLIAYAMNEGIRIVAMSATIPDVNKI 170 Query: 14606 GAWLDTVRGHTDVIVSEHRPVPLWQHVMVGREI 14704 +D ++I ++ RP+PL++ V +G ++ Sbjct: 171 AEIIDA-----EIIKTDERPIPLYKAVKIGNKL 198 >ref|NP_817947.1|gp96 Length = 566 Score = 55.8 bits (133), Expect = 3e-07 Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 5/185 (2%) Frame = +1 Query: 2845 YEDIGGLGPQIEQIRDAVELPFLHPDLYREHGLKAPKGILLYGPPGCGKTLIAKAVANSL 3024 ++++GGL E A+ + R + LK PKG +L G GCGKTL +A L Sbjct: 281 FDNVGGLDVFKEW---AIRQKIAYSPEARAYNLKLPKGAMLIGVSGCGKTLSCQA----L 333 Query: 3025 AARAAERTGNVDLKSYFLNIKGPELLDKYVGETERHIRLIFSRAREKASDGSPVVVFFDE 3204 A +D+ + +KG KYVGE+E +R IFS K V+V+ DE Sbjct: 334 GAEWNWPVVRLDINA----LKG-----KYVGESESRLRGIFS----KIDALGQVIVYIDE 380 Query: 3205 MDSLFR-----TRGTGISSDVETTIVPQLLSEIDGVERLDNVIVIGASNREDMIDPAILR 3369 ++ + G+S+D I+ + +R V+ +N + P LR Sbjct: 381 VEKALEGAVSGSADGGVSADALGAILTWM------QDRAGQAFVMMTANDPSKLPPEFLR 434 Query: 3370 PGRLD 3384 GR D Sbjct: 435 KGRFD 439 >ref|NP_720276.1|GtrB Length = 325 Score = 47.0 bits (110), Expect = 1e-04 Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 8/246 (3%) Frame = +1 Query: 19060 HQGKGLAVRVLTIIPTYNELESLP---KTLARLRAAVPAS-DVLVVDDNSPDGTGQLADG 19227 H +G +++ ++P +NE +++P KT+ +++ ++D S D T + + Sbjct: 9 HCFQGYKMKISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINK 68 Query: 19228 IAAEDGQVHVLHREGKAGLGAAYIAGFKWGLEAGYDILVEMDADGSHQPEQLQQLLDAVE 19407 IAA D V L G A AG A D ++ +D D E + L++ + Sbjct: 69 IAASDPLVIPLSFTRNFGKEPALFAGLD---HATGDAVIPIDVDLQDPIEVIPHLIEKWQ 125 Query: 19408 EGADLAMGSRWVPGGSVVNWPLYRQAISRVGSTYARLMLGIKIKDVTGGYRAFRRTTLEK 19587 GAD+ + R + L R+ + ++ KI++ G +R R +E Sbjct: 126 AGADMVLAKR---SDRSTDGRLKRKTAEWFYKLHNKIS-NPKIEENVGDFRLMSRAVVE- 180 Query: 19588 LNLDQVDSVGYGFQVDLAWRVARMGLKIVERPITFVERELGASKMSG----NIVVEAMIN 19755 N+ Q+ + L+W +G K ER G SK +G N+ +E + + Sbjct: 181 -NIKQMPERNLFMKGVLSW----VGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITS 235 Query: 19756 VTKWGL 19773 + + L Sbjct: 236 FSTFPL 241 >ref|NP_599056.1|bactoprenol glucosyltransferase Length = 307 Score = 45.8 bits (107), Expect = 3e-04 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 4/176 (2%) Frame = +1 Query: 19081 VRVLTIIPTYNELESLP---KTLARLRAAVPAS-DVLVVDDNSPDGTGQLADGIAAEDGQ 19248 +++ ++P +NE E++P KT+ + P +++ ++D S D T + + +A D Sbjct: 1 MKISLVVPVFNEEEAIPVFYKTVREFQELKPYEVEIVFINDGSKDATESIINALAVSDPL 60 Query: 19249 VHVLHREGKAGLGAAYIAGFKWGLEAGYDILVEMDADGSHQPEQLQQLLDAVEEGADLAM 19428 V L G A AG A D ++ +D D E + L++ + GAD+ + Sbjct: 61 VVPLSFTRNFGKEPALFAGLD---HASGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVL 117 Query: 19429 GSRWVPGGSVVNWPLYRQAISRVGSTYARLMLGIKIKDVTGGYRAFRRTTLEKLNL 19596 R + L R+ + ++ KI++ G +R R +E + L Sbjct: 118 AKR---SDRSTDGRLKRKTAEWFYKLHNKISTP-KIEENVGDFRLMSREVVENIKL 169 >ref|YP_006358.1|GtrB Length = 310 Score = 44.3 bits (103), Expect = 8e-04 Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 8/239 (3%) Frame = +1 Query: 19081 VRVLTIIPTYNELESLP---KTLARLRAAVPAS-DVLVVDDNSPDGTGQLADGIAAEDGQ 19248 +++ ++P +NE +++P KT+ +++ ++D S D T + + IAA D Sbjct: 1 MKISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPL 60 Query: 19249 VHVLHREGKAGLGAAYIAGFKWGLEAGYDILVEMDADGSHQPEQLQQLLDAVEEGADLAM 19428 V L G A AG A D ++ +D D E + L++ + GAD+ + Sbjct: 61 VIPLSFTRNFGKEPALFAGLD---HATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVL 117 Query: 19429 GSRWVPGGSVVNWPLYRQAISRVGSTYARLMLGIKIKDVTGGYRAFRRTTLEKLNLDQVD 19608 R + L R+ + ++ KI++ G +R R +E N+ Q+ Sbjct: 118 AKR---SDRSTDGRLKRKTAEWFYKLHNKIS-NPKIEENVGDFRLMSRAVVE--NIKQMP 171 Query: 19609 SVGYGFQVDLAWRVARMGLKIVERPITFVERELGASKMSG----NIVVEAMINVTKWGL 19773 + L+W +G K ER G SK +G N+ +E + + + + L Sbjct: 172 ERNLFMKGVLSW----VGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITSFSTFPL 226 >ref|NP_803852.1|ORF286 Length = 508 Score = 43.5 bits (101), Expect = 0.001 Identities = 64/251 (25%), Positives = 92/251 (36%), Gaps = 77/251 (30%) Frame = +1 Query: 2878 EQIRDAVELPFLHPDLYREHGLKAPKGILLYGPPGCGKTLIAKAVAN---------SLAA 3030 E+ + +E + Y + GL +L GPPG GKT I+KA+A+ SLA+ Sbjct: 202 EEFLNKIEEFYSDRKWYDDRGLPYKFTCVLTGPPGTGKTSISKAIASHFNKNVSALSLAS 261 Query: 3031 ------RAAERT---GNVDLKSYFLN--------IKGPELLDKYVGETERHIRLIFSRAR 3159 R A T GN+ L F + + P LDK + E ER I + Sbjct: 262 MTNDSLRRAFTTLPKGNILLIEDFDDTPAVKDRVLNDPVKLDKEIKELERKYSFIDLIEK 321 Query: 3160 EKAS--------DGSPVVVF-------------------------------FDEMDSLFR 3222 ++ +G VV F DE D LF Sbjct: 322 YPSAWVDLKDDYEGYSVVGFNDTIYIFDENSDDQGFGISAYAMAELGVSKWADEKDPLFT 381 Query: 3223 T------------RGTGISSDVETTIVPQLLSEIDGVERLDNVIVIGASNREDMIDPAIL 3366 T G + LL+ +DG+ LD + I +N + ID A+L Sbjct: 382 TIRRWWKLKKCMKNGITYEQPASGLTLSALLNGLDGIVPLDETMTILTTNHPENIDKALL 441 Query: 3367 RPGRLDVKVKI 3399 R GR+D V+I Sbjct: 442 RKGRVDYMVEI 452 >ref|NP_059582.1|O-antigen conversion protein Length = 310 Score = 43.5 bits (101), Expect = 0.001 Identities = 52/239 (21%), Positives = 100/239 (41%), Gaps = 8/239 (3%) Frame = +1 Query: 19081 VRVLTIIPTYNELESLP---KTLARLRAAVPAS-DVLVVDDNSPDGTGQLADGIAAEDGQ 19248 +++ ++P +NE +++P KT+ +++ ++D S D T + + IAA D Sbjct: 1 MKISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPL 60 Query: 19249 VHVLHREGKAGLGAAYIAGFKWGLEAGYDILVEMDADGSHQPEQLQQLLDAVEEGADLAM 19428 V L G A AG A D ++ +D D E + L++ + GAD+ + Sbjct: 61 VIPLSFTRNFGKEPALFAGLD---HATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVL 117 Query: 19429 GSRWVPGGSVVNWPLYRQAISRVGSTYARLMLGIKIKDVTGGYRAFRRTTLEKLNLDQVD 19608 R + + R+ + ++ KI++ G +R R +E N+ Q+ Sbjct: 118 AKR---SDRSTDGRMKRKTAEWFYKLHNKIS-NPKIEENVGDFRLMSRAVVE--NIKQMP 171 Query: 19609 SVGYGFQVDLAWRVARMGLKIVERPITFVERELGASKMSG----NIVVEAMINVTKWGL 19773 + L+W +G K ER G SK +G N+ +E + + + + L Sbjct: 172 ERNLFMKGVLSW----VGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITSFSTFPL 226 >ref|NP_944130.1|UvsW RNA-DNA and DNA-DNA helicase Length = 503 Score = 43.1 bits (100), Expect = 0.002 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 4/100 (4%) Frame = +2 Query: 14207 PTGAGKTIVGEFAIYLALQR-ALKAFYTTPIKALSNQKYSELAD-KYGPEN--VGLLTGD 14374 PT AGK+++ Y LQR K P AL +Q + AD + P N +G++ G Sbjct: 136 PTSAGKSLIACLLTYWYLQRYEGKVLVLVPTTALVDQMIGDFADYRLIPRNACLGVMAG- 194 Query: 14375 TSINGDAPVVVMTTEVLRNMLYADSDTLDDLGFVVMDEVH 14494 T NG P+VV T + M +S+ G +++DE H Sbjct: 195 TRKNGSEPIVVSTWQSACKM---NSEWFKQFGMIIVDECH 231 >ref|NP_852495.1|DNA Length = 397 Score = 42.4 bits (98), Expect = 0.003 Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 1/122 (0%) Frame = +2 Query: 14135 FELDDFQRQACLSLQQGRGVLVAAPTGAGKTIVGEFAIYLALQRALKAFYTTPIKALSNQ 14314 F L + Q +L Q G+ VA P G+GKT++G IY ++ A + T K L Q Sbjct: 105 FVLKEDQIPMVQALMQENGIGVA-PAGSGKTVMGMRYIY---EKGKAALWLTHTKDLMYQ 160 Query: 14315 KYSELADKY-GPENVGLLTGDTSINGDAPVVVMTTEVLRNMLYADSDTLDDLGFVVMDEV 14491 D G +G GD ++V T + L+ D +G VV+DE Sbjct: 161 SAKRAKDTMPGIGRIGFFGDGVHDWGDGKLIVATVQTLQRNPQIIDALNDFIGTVVVDEA 220 Query: 14492 HY 14497 H+ Sbjct: 221 HH 222 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 38.1 bits (87), Expect = 0.058 Identities = 45/139 (32%), Positives = 55/139 (39%), Gaps = 18/139 (12%) Frame = +1 Query: 14071 GQCRTDRRS*NVPRRLRPDAGFRT-----RRFPAPSMPVPAAGTGSPGRGPHRGRQDHRG 14235 G CR DRR RRLR R R P + +G G GR +GR D G Sbjct: 428 GVCRADRRREGQVRRLRGPRQGRVGQGGRARCAGPRLRFDHSGVGEQGRCQGQGRADQDG 487 Query: 14236 GVRH-----------LSGTPAGAESLLHHPDQGTEQ-PEVFGTGR*V-RPGERGAPHRGH 14376 G H L G PAG P++G Q V G GR + R G+R RG Sbjct: 488 GGAHQGVEVLGGRGRLQGHPAG------QPERGAVQHVGVPGPGRSLARSGQR---QRGR 538 Query: 14377 QHQWRCPGCRHDNRSPAEH 14433 + CRH+ P +H Sbjct: 539 RRN-AISLCRHE--QPDQH 554 >ref|NP_817695.1|gp17 Length = 553 Score = 37.0 bits (84), Expect = 0.13 Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 7/95 (7%) Frame = +2 Query: 30785 APADGLYGRLRFGQELTGV-------RHHCRGVAADDQRDVQRVRAGLHADSGAARRRPA 30943 APA GL+ R Q T V RH + R V + R D+ A Sbjct: 397 APARGLHLTQRSDQRDTVVADRLHLHRHRLYWHPVEPARRVPQRRVFRVPDAAALPAPLR 456 Query: 30944 GGPDHRDHRGPGTDGGQPPLHRGHRYRRQRDAAYP 31048 GPD HRG G D G P RGH + + +P Sbjct: 457 HGPDAPQHRGHGADPGAPVQRRGHLHIPRHPVRHP 491 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 36.6 bits (83), Expect = 0.17 Identities = 23/72 (31%), Positives = 26/72 (36%), Gaps = 3/72 (4%) Frame = +2 Query: 25130 PRSSFSPGRTTSSPGPVPRTTGSSASRKSCAGG---PATCQRRPTASCPGRYPDPAKTPM 25300 P P R S P P A + AG P + RP P PDP Sbjct: 37 PHPHLGPARDRSPDHPEPDHPCRRAPSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVH 96 Query: 25301 PAGPGGCPDAPS 25336 PA PG P AP+ Sbjct: 97 PAAPGCAPAAPA 108 Score = 35.4 bits (80), Expect = 0.37 Identities = 51/184 (27%), Positives = 66/184 (35%), Gaps = 5/184 (2%) Frame = +1 Query: 15904 GARLRPQLP--RTAARGADVGQPAAKDRPPGP*R-AHHAGDPGPDTKVV*RKGAQVEEGP 16074 G + P P AA A PA + R P R AHH P T+ + + G Sbjct: 92 GPAVHPAAPGCAPAAPAAPEYAPALRPRAPECDRGAHHLRTRAPRTRT---RAVPLGPGA 148 Query: 16075 RIVGPQRDPGKPPACTRKRPQH*FRACCGPA*RGEADQRSAPGVAFPSLPRLQRTGGSRA 16254 R+ P D + TR+R + P R R GV +R G R Sbjct: 149 RVRTPVEDRRR----TRRRRR--------PDPRRRVQPRLGVGVH-------RRRGARR- 188 Query: 16255 VVGALVETPARNGWTGPGNPG--PHQHHRQDIRPGLRPSLQLRLPRNLRIRKSNHQCRRP 16428 VG V AR G P PH H + +RP R + R +LR R H+ P Sbjct: 189 -VGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRRHRRRASLRPRHRRHRSTPP 247 Query: 16429 KTAP 16440 P Sbjct: 248 MNTP 251 >ref|NP_958295.1|hypothetical protein Length = 215 Score = 35.8 bits (81), Expect = 0.29 Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Frame = +2 Query: 25166 SPGPVPRTTGSSASRKSCAGGPA-TCQRRPTASC-PGRYPDPAKTPMPAGPGGCPDAPSG 25339 SPG P SAS SC+ GPA R P+ C P R P A TP G + Sbjct: 15 SPGSAPTAPHCSASPASCSDGPAPRSTRPPSPPCRPSRPPCTAGTPTACSAGPAVPMRAA 74 Query: 25340 HRIRR 25354 R+ R Sbjct: 75 RRLAR 79 >ref|NP_817716.1|gp38 Length = 231 Score = 35.4 bits (80), Expect = 0.37 Identities = 22/80 (27%), Positives = 36/80 (45%) Frame = -3 Query: 10165 PTPTRKSSGAPRPQEASNSSPVDQATPT*WVETVSPGLASAPSPSMRSVMTSSVGTSPSG 9986 PT ++ P P+ A+ PV +TPT V++ SP + + P+ S + SG Sbjct: 81 PTSPITATSPPPPRPAAAQPPVQHSTPTKTVQSASPAVVALPTRG-----GSVFVRTRSG 135 Query: 9985 KSISGFWRSKLRCPNDMFAP 9926 K++ +RC D P Sbjct: 136 KTVCQMSAGDVRCNVDFLRP 155 >ref|NP_542287.1|unknown Length = 224 Score = 35.0 bits (79), Expect = 0.49 Identities = 49/194 (25%), Positives = 69/194 (35%), Gaps = 10/194 (5%) Frame = +2 Query: 24755 TCCPSSTV---PWQSSRSSTAERLGSWEVPTADISRPGPSARTTVSRRPSWSADSWIRSV 24925 TC P+S++ P + T+ +W P + P SA + RR W+ +W S Sbjct: 10 TCIPASSISPCPAPVIITCTSRMRPTWTRPERRCASPTRSAASPTFRR--WTRSAWPTSR 67 Query: 24926 SSAPRIXXXXXXXXXXXXRRNRWPPKAPWPRSATSGRRRWSSTAKKTSAARWNRANDTSQ 25105 S R + R P A W + + +R S +K + A +R Sbjct: 68 SRRLRSKISSARGPAQRSSKRRLPSIAAWSKHSARSQRARSLPSKSLATAPQHRIPLART 127 Query: 25106 R*SSRAWTPRSSFSPGRTTSSPGPVPRTTGSSASRKS-----CAGGPA--TCQRRPTASC 25264 R R P + GR P T SA R+S AG PA TC R + Sbjct: 128 RDPIRL-LPALMGACGRRAR---PRSIATSRSAMRRSSAFSMTAGAPAMSTCLRSTMTAP 183 Query: 25265 PGRYPDPAKTPMPA 25306 PA PA Sbjct: 184 LSNTARPAIARAPA 197 >ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase accessory protein Length = 320 Score = 35.0 bits (79), Expect = 0.49 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 1/134 (0%) Frame = +1 Query: 2959 ILLYGP-PGCGKTLIAKAVANSLAARAAERTGNVDLKSYFLNIKGPELLDKYVGETERHI 3135 I+L+ P PG GKT +AKA+ N + A G+ D K F ++GP Sbjct: 45 IILHSPSPGTGKTTVAKALCNDINAEMMFVNGS-DCKIDF--VRGP-------------- 87 Query: 3136 RLIFSRAREKASDGSPVVVFFDEMDSLFRTRGTGISSDVETTIVPQLLSEIDGVERLDNV 3315 + + AR + +G P V+ DE D G S T + + S Sbjct: 88 --LTAFARSVSMEGKPKVIVIDEFD----RSGLAESQRHLRTFMEEFSSNCS-------- 133 Query: 3316 IVIGASNREDMIDP 3357 I+I A+N + +I+P Sbjct: 134 IIITANNIDGIIEP 147 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 174,219,498 Number of Sequences: 14420 Number of extensions: 3864907 Number of successful extensions: 14857 Number of sequences better than 0.5: 16 Number of HSP's better than 0.5 without gapping: 6140 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 14781 length of database: 3,019,461 effective HSP length: 114 effective length of database: 1,375,581 effective search space used: 15549567624 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig14 (29,086 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_852574.1|Collagen triple helix repeat protein 40 0.010 ref|NP_542287.1|unknown 39 0.038 ref|NP_665975.1|putative HNH endonuclease 36 0.25 ref|NP_817829.1|gp68 35 0.32 >ref|NP_852574.1|Collagen triple helix repeat protein Length = 536 Score = 40.4 bits (93), Expect = 0.010 Identities = 36/131 (27%), Positives = 44/131 (33%) Frame = +3 Query: 23019 GPTWSPGLRGRTPPPAPWWSTGISTSCLPSGISGQSIPSEPNSRTA*SGAAEPWT*RTWT 23198 GPT S GL G T P P TG + P+G +G + P+ PNS T +G P Sbjct: 57 GPTGSTGLTGLTGPTGPTGPTGPTGPTGPTGSTGLTGPTGPNSDTGPTGPTGP-----TG 111 Query: 23199 P*SSLSCXXXXXXXXXXXXXXXXRFSPTRRRAAPTEPGTQSKTGANSSTAPQRPFRKSAA 23378 P + PT + G TG T P Sbjct: 112 PSDGPTGPTGATGPTGPPDGPTGDTGPTGSTGPTGDTGPTGSTGPTGDTGP-------TG 164 Query: 23379 SPPPLADNGPT 23411 S P D GPT Sbjct: 165 STGPTGDTGPT 175 >ref|NP_542287.1|unknown Length = 224 Score = 38.5 bits (88), Expect = 0.038 Identities = 59/234 (25%), Positives = 90/234 (38%), Gaps = 20/234 (8%) Frame = -3 Query: 8957 AASVVACHFRPVLPCPNSKRSGTCLS--RSSGTTRSTAPRSPSIVRA*KWWTLAAAPTWR 8784 A+S+ C ++ C + R R + TRS A SP+ R WT +A PT R Sbjct: 14 ASSISPCPAPVIITCTSRMRPTWTRPERRCASPTRSAA--SPTFRR----WTRSAWPTSR 67 Query: 8783 --RIRSRAPT-------------PVPKAWPPSSSHSWSRTDCWTLTVPWLTTGLSSLPME 8649 R+RS+ + P AW S+ S + ++ T +P+ Sbjct: 68 SRRLRSKISSARGPAQRSSKRRLPSIAAWSKHSARSQRARSLPSKSLA--TAPQHRIPLA 125 Query: 8648 KRRSPCGRRCPTAQGCWGWKAAWRSVNSRRRPQRGSLQLRHRCGGPAPRS---DTTPSPS 8478 + R P R P G G +A RS+ + R R S G PA + T +P Sbjct: 126 RTRDPI-RLLPALMGACGRRARPRSIATSRSAMRRSSAFSMTAGAPAMSTCLRSTMTAPL 184 Query: 8477 ASSWRNSAAGSPAAPFRSCTXXXXXXXXXXXXSWGCRRTRSPATGTCCTPSIPA 8316 +++ R + A +PA C CRR R+P + T +I A Sbjct: 185 SNTARPAIARAPA-----CRTGF------------CRRWRTPTGSSYFTTTIRA 221 >ref|NP_665975.1|putative HNH endonuclease Length = 146 Score = 35.8 bits (81), Expect = 0.25 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Frame = -2 Query: 14523 EARRACIAHYGTSCAACGFS----FEIAYGDAGREFIDVHHTTPVSLLDSSYRLDPVTDL 14356 + R + YG C CG S E D ++ I +HH V+ DS RL+ +L Sbjct: 5 DLRALVLDKYGCECIVCGRSPEKWLESEDLDRSQDKISIHH---VNGDDSDDRLE---NL 58 Query: 14355 VPLCSNCHAMAH 14320 +P+C +CH H Sbjct: 59 IPVCQSCHTHIH 70 >ref|NP_817829.1|gp68 Length = 237 Score = 35.4 bits (80), Expect = 0.32 Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Frame = +3 Query: 17886 GELSCRAQRGEAGENVTRRVDVPGHICPAEAELPGRPKHAAQ-GPAGTE---LNHRGVVR 18053 G++SCR R EA E ++ PG + P P H A GPAG G R Sbjct: 160 GKVSCRTCRAEAVERYRSKLSSPG-----DDSSPATPGHGAPGGPAGVAAPVAAPHGTAR 214 Query: 18054 AGLRPIPGPQP 18086 GL P G P Sbjct: 215 GGLGPAAGTPP 225 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 148,755,003 Number of Sequences: 14420 Number of extensions: 3308904 Number of successful extensions: 12203 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 5563 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12149 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 13317599581 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig15 (29,273 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 229 9e-60 ref|NP_818239.1|gp188 64 1e-09 ref|NP_046572.1|ABC transporter 52 3e-06 ref|NP_817692.1|gp15 38 0.050 ref|NP_861884.1|Hoc head outer capsid protein 37 0.15 ref|NP_996646.1|hypothetical protein predicted by GeneMark 36 0.19 ref|NP_944302.1|conserved phage protein 35 0.32 >ref|NP_945090.1|gp59 Length = 429 Score = 229 bits (585), Expect = 9e-60 Identities = 136/421 (32%), Positives = 220/421 (52%), Gaps = 6/421 (1%) Frame = +2 Query: 6929 ETSPAGKKVLHR-AIAASAMGNATEWFDYGVYAVAATYITANFFPG-EGAMGTVWTLATF 7102 E +P+ HR A+ A +GN EWFD+ Y+ + I FFP + + + +++T Sbjct: 9 EAAPSASSDTHRRAVIAVIVGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLLSVSTI 68 Query: 7103 ALSFLVRPLGGLFWGPLGDRIGRKRVLALTIILMAGSTFAIGLLPTHSLAGWLAPALLVL 7282 + F +RP+GG+ G + D++GR+ L +TI LM T IG PT+ AG AP ++V+ Sbjct: 69 GVGFFMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVV 128 Query: 7283 LRMIQGFSTGGEYGGAATFMAEYAPDKKRGFYGSFLEFGTLGGFAXXXXXXXXXXXXXXE 7462 R++QGFS GGE GGA ++ E P ++ G+Y S+++ E Sbjct: 129 ARLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDE 188 Query: 7463 GSMTEWGWRLPFLIAGPMGIIGMYLRNRLEDTPVFRELEASGELEPATSTALRDLLRDYW 7642 + WGWR+PFL+ +G +G+Y+R+RL D P F E GE P +++R + Sbjct: 189 QQIESWGWRIPFLLGLGLGPVGIYIRSRLND-PGFPADERLGECAPVV-----EVVRSFS 242 Query: 7643 RPMLIMAGLVIPLNVVNYTLLSYMPTYLEGSVGMDANTVLTLMFVGQIAMMLMIPLAGAR 7822 R L+ GLV+ V +Y LL Y+PTY + + ++T + VG ++ + PL G Sbjct: 243 REALVGFGLVVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHL 302 Query: 7823 SDKIGRKPMWFF--SLIGLFVMAIPMYMIM--ANGFWFAMLGFAVLGLLYLPQLATISAT 7990 SD GR+ WF +L+ V A P++ ++ A G ++ V GL+ I A Sbjct: 303 SDLFGRR--WFLAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAA 360 Query: 7991 FPAMFPTQVRYAGFAITYNVSTAIFGGTAPMMNELLVNATGNVLMPAYYMMGACLIGLVA 8170 MFP V G +I+YN++ FGG + + + T N L PA+Y++ A ++ L++ Sbjct: 361 LSDMFPDGVLSTGISISYNLAVITFGGFSAAIITWAIATTHNNLAPAFYVIAAAIVSLIS 420 Query: 8171 V 8173 V Sbjct: 421 V 421 >ref|NP_818239.1|gp188 Length = 318 Score = 63.5 bits (153), Expect = 1e-09 Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 1/203 (0%) Frame = -1 Query: 15236 GYLPTPPAFLEGLRERADRHGIQLIFDEVQAGVGRMGKFWGHQYSTATPDILITAKGIAS 15057 G L P L+ + +RA + G ++ DE G GR+G+ WGHQ TPD +I Sbjct: 117 GRLVAPEVVLDEV-DRATKSGRTVVADESATGFGRLGRIWGHQAYGFTPDAIIFGGPAGG 175 Query: 15056 GFPISAIAASTETMSKGWPGSQGGTYXXXXXXXXXXXATLDVVRDEGLVENSRIRGEQLQ 14877 G + + E + + G G ATL + E L+E+ R G Sbjct: 176 GLTLGGVIGPAELLDDAFVGPMAGA----PLACATGAATLAAINPE-LLEHVREEGVTFG 230 Query: 14876 AGLNDIQARF-PVIGDVRGKGLMQGIEFTTEEGTPDSXXXXXXXXXXXAEGLLTLTCGPA 14700 L + RF + D G GL ++F + + GL LT P Sbjct: 231 ERLRALVDRFGDYLADTAGSGLYHTLDFRSPQ------LARKFEVSTRQHGL--LTAPPV 282 Query: 14699 GNVVRLIPALVVTAEEITTGLQL 14631 G+ V + P L+ + E+ G++L Sbjct: 283 GSTVVVTPTLIASERELARGVEL 305 >ref|NP_046572.1|ABC transporter Length = 705 Score = 52.4 bits (124), Expect = 3e-06 Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 3/215 (1%) Frame = +1 Query: 2995 HVLKSLNFDVAPGEKVSIIGPSGSGKTTILRILMTLETPSEGRVTVDGDTLWDVTRGQKV 3174 ++++ +N + +KV IIG SG+GK+T + L L + + ++G D+ R + Sbjct: 497 YIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNG---LDINRYDHL 553 Query: 3175 RETRQLRETRKKIGMVFQQFNLFPHMTALENIIEAPVHVLGM--GKXXXXXXXXXLLNLV 3348 RK+I + + LF T EN+ + + NL Sbjct: 554 -------SIRKRIVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLD 605 Query: 3349 GLGKH-MNHTPPQMSGGQQQRVAIARALAMRPKVLLFDEPTSALDPELIGEVLNVIRNLA 3525 + ++ +S GQ+QR+A+ARA+ +P+VL+ DE S +DP + +I Sbjct: 606 KQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDP----DNTKLIYETL 661 Query: 3526 HTTDMTMLMVTHEMRFAEEISDRVVMFDNGAAVES 3630 H D ++++TH + + ++V F N +ES Sbjct: 662 HRMDCLIILITHNDPSNFKYNKKLV-FRNNRIIES 695 >ref|NP_817692.1|gp15 Length = 1213 Score = 38.1 bits (87), Expect = 0.050 Identities = 32/113 (28%), Positives = 42/113 (37%), Gaps = 5/113 (4%) Frame = +2 Query: 2549 QRLHGGGLPQRHPGCSYRPMGSGDGAQPPRF---PDLGPHHPATGHPDRGPDARQLPHPD 2719 QR G P PG S + D Q R P+ GP P P+RGP +P+ Sbjct: 554 QRARAGLPPLPTPGLSPDQLAGIDAGQRARAGLPPEAGPPPPPAAPPERGPG---MPYDQ 610 Query: 2720 VQGLGSPVRHHGG*THGNSPGHRKL-KLPLPGT-PHPRSAAVPGSQLPGLPAG 2872 Q + P + +P+PG P P A PG +PG G Sbjct: 611 AQQQVADAGRADSAKPSFDPSQYSVDAIPVPGAIPTPAGAGAPGVPMPGAGGG 663 >ref|NP_861884.1|Hoc head outer capsid protein Length = 471 Score = 36.6 bits (83), Expect = 0.15 Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 4/144 (2%) Frame = -2 Query: 28027 TVEVSAGSLAISSASESATLDVV--QPGAGAFLPLGGTTVTDNRAGTAGWSATVVLTDFT 27854 TVE SA SL ++ + S+TL + P +P+ T+T N +G + T Sbjct: 176 TVESSAVSLTVNKKANSSTLKITPESPTTVFGVPI---TLTANVSGAPSGATTSFQWSMD 232 Query: 27853 GARTRATLSATVATYMPAAAISTGVVTVRAFTTTDPT--IPKVIQTATSVIGNNTATWQA 27680 + L AT ATY G T++ + T + K I +V+ NN A Sbjct: 233 DSNI---LDATSATYK-FTPTEVGSKTLKCTVSVSATNYVTKEISAEATVVTNNATFNSA 288 Query: 27679 GLRVQVPAAAVADVYTATLTYSVS 27608 + + P+ TATLT SV+ Sbjct: 289 TISLSPPSVNTTVGGTATLTASVT 312 >ref|NP_996646.1|hypothetical protein predicted by GeneMark Length = 357 Score = 36.2 bits (82), Expect = 0.19 Identities = 32/90 (35%), Positives = 40/90 (44%), Gaps = 7/90 (7%) Frame = +3 Query: 28893 ALGTVTVSDLRAGVQGWDAQVNMSDFVGTNTATVIAAASATYT-PGTAAESGTSTVTPSA 29069 ALGT T + G ++ GT TA A+A Y TA ESGT+T S Sbjct: 150 ALGTATAGESGTATAGESGTATAGNY-GTATAGESGTATAGYRGTATAGESGTATAGESG 208 Query: 29070 -----QTGLATAKTVQAAT-GVSGNNTAAW 29141 ++G ATA AT G SG TA + Sbjct: 209 TATAGESGTATAGNYGTATAGESGTATAGY 238 >ref|NP_944302.1|conserved phage protein Length = 532 Score = 35.4 bits (80), Expect = 0.32 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Frame = -2 Query: 1663 QQMRLPGTARRLVQSPAGW-----SAAPATAGVHIRLSRPRGTPLPFPADQPSVLHSSSA 1499 +Q RL G + Q PA +AAPAT + +S P TPLP A QPS +++ Sbjct: 56 EQARLVGLGPQGPQGPAAPPAPDPNAAPATTQP-VDMSTPTATPLP--AQQPSAAPAAAP 112 Query: 1498 VAPSTT---VGSKPHLVRIAPNS 1439 P+TT S P +I P++ Sbjct: 113 ATPTTTTTPAPSSPQTPQIPPDA 135 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 145,794,171 Number of Sequences: 14420 Number of extensions: 3209337 Number of successful extensions: 12278 Number of sequences better than 0.5: 7 Number of HSP's better than 0.5 without gapping: 5652 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12226 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 13405169644 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig16 (36,019 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 58 6e-08 ref|NP_817395.1|gp57 39 0.027 ref|NP_052273.1|G protein 39 0.027 ref|YP_164321.1|hypothetical protein 37 0.14 ref|YP_024716.1|gp43 35 0.39 >ref|NP_046572.1|ABC transporter Length = 705 Score = 58.2 bits (139), Expect = 6e-08 Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 19/204 (9%) Frame = +2 Query: 6716 IFTDVDLAIDRGSKVVILGLNGAGKTTLLRMLAGVDK-PDTGEVIAGHGL---------K 6865 I D++L +DR KV+I+G +G GK+T + L+ + K PD + G + K Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 6866 VGYYAQEHETLDVDRTVLQNM-RSSAPDMNDSEVRGILGS---FLFSGDD-----VDKPA 7018 Y E+ L T+ +N+ D N+ E I+ F+ + D + + Sbjct: 558 RIVYIDENPFL-FKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG 616 Query: 7019 GVLSGGEKTRLALATIVASSANVLLLDEPTNNLDPASRTEILGALRNYTGAVVLVSHDEG 7198 LS G+K RLALA + VL+LDE +N+DP + I L ++L++H++ Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCLIILITHNDP 676 Query: 7199 AVEALNPERVVLLPDGVEDHWNED 7270 + N + V +E ++E+ Sbjct: 677 SNFKYNKKLVFRNNRIIESSYSEN 700 Score = 40.0 bits (92), Expect = 0.016 Identities = 42/214 (19%), Positives = 93/214 (43%), Gaps = 3/214 (1%) Frame = +2 Query: 5708 VQDLELRAGA---RLLMDQVSFRIDKGDKIGLVGRNGAGKTTLTRVLAGEGLPAAGKVTR 5878 ++ + L GA R +++ ++ +D+ DK+ ++G +G GK+T + L+ Sbjct: 483 IKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLS------------ 530 Query: 5879 SGEIGYLPQDPRTPDMEQLARDRILSVRGLDIAVGKLRLAHEEMASEDAAVQRKAMNRYD 6058 ++ +P + + R LS+R + + + + E+ + +D Sbjct: 531 --KLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEI----FD 584 Query: 6059 RLESEFLXXXXXXXXXXXXXICSNLALPDRLLNQPLKTLSGGQRRRVELARILYSDAETM 6238 + E E IC+ L++ LS GQ++R+ LAR + + + Sbjct: 585 QNEIE----NACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVL 640 Query: 6239 LLDEPTNHLDADSIAWLRDFLKNHQGGLIVISHD 6340 +LDE +++D D+ + + L +I+I+H+ Sbjct: 641 ILDESLSNIDPDNTKLIYETLHRMDCLIILITHN 674 Score = 37.4 bits (85), Expect = 0.10 Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 3/71 (4%) Frame = +3 Query: 16140 LNRTFATLSEGERKRVQIARALMTDPELLLLDEPAAGLDLGGRE---ELVHKLGELAMDD 16310 L+ + LS G+++R+ +ARA++ P++L+LDE + +D + E +H++ L Sbjct: 612 LSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCL---- 667 Query: 16311 AAPAMVLVTHH 16343 ++L+TH+ Sbjct: 668 ----IILITHN 674 >ref|NP_817395.1|gp57 Length = 287 Score = 39.3 bits (90), Expect = 0.027 Identities = 38/132 (28%), Positives = 66/132 (50%) Frame = +1 Query: 15109 SAAPSLSCTSARTESTTSAGSPARTATRACRLWAKSSSPRMAASVTAVTSSFLPA*AARS 15288 SAA S + ++A + + ++AGS A +A W+ + S +A+ +A S+ A + Sbjct: 151 SAAWSAAWSAAGSAARSAAGSAAGSAA-----WSAAGSAAWSAAWSAAESA-----AGSA 200 Query: 15289 SMTSCWISVESTSMISNLWGASRRDAGTIAVSIPVKPAEATSWRSAAISAAVPDSTEKST 15468 + ++ W S ++ S W A+ AG+ A S + A ++ SAA SAA+ + T KS Sbjct: 201 AWSAAW-SAAGSAAWSAAWSAAGSAAGSAAES-AARSAAGSAAESAAWSAALIEFTRKSI 258 Query: 15469 VYTSKRWSPVRD 15504 RW + D Sbjct: 259 A----RWRELAD 266 >ref|NP_052273.1|G protein Length = 812 Score = 39.3 bits (90), Expect = 0.027 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 5/118 (4%) Frame = -1 Query: 32011 VSRLRAAMKRSTAHRKYIV-----NVSAMEGQFSRAYKGPGHPHTNMAKAALNMMTRTSA 31847 + RL AA K S + +V N+ +F AY+ G + + +L +T+T+ Sbjct: 458 LDRLTAAFKASDGKTEELVKVMQDNLGGDFKEFQSAYEAVGTDLFDQQEGSLRKLTQTAT 517 Query: 31846 QEMLDSDGILMTAVDTGWITDERPHYTKVRLMEEGFHAPLDLVDGAARVYDPIVMGEN 31673 Q +L DG WI + T + ++ G A + ++ G V P+VMG N Sbjct: 518 QYVLKLDG---------WIQKNKGLATTIGIIAGGALALIGIIGGIGLVAWPVVMGIN 566 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 37.0 bits (84), Expect = 0.14 Identities = 49/156 (31%), Positives = 64/156 (41%), Gaps = 23/156 (14%) Frame = -3 Query: 1301 GGDQDKPCDAVMRDGGVHVADVERFQGVELGAGIQALGQRVQVEAGRQRPRGERLVLR-- 1128 G DQ V G + QG + G GI+A +R E R+ PR V R Sbjct: 377 GADQPAARRGVQGQAGRRTVERRGLQGADAG-GIRA--RRDDQEPVRRLPRRRAGVCRAD 433 Query: 1127 ----GQSEELNGRVEGKL-----PGTPGPRERLGHRRGAG--------GQSDQEGGFRGA 999 GQ L G +G++ GPR R H G G G++DQ+GG Sbjct: 434 RRREGQVRRLRGPRQGRVGQGGRARCAGPRLRFDHS-GVGEQGRCQGQGRADQDGGGAHQ 492 Query: 998 VAELIGSRPAGYGSGAGVQPGR----YVGFELRGPG 903 E++G R G AG QP R +VG + GPG Sbjct: 493 GVEVLGGRGRLQGHPAG-QPERGAVQHVG--VPGPG 525 >ref|YP_024716.1|gp43 Length = 128 Score = 35.4 bits (80), Expect = 0.39 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 1/85 (1%) Frame = +3 Query: 4980 GAAKHDGGQPADHQGCEREGDDVACGGSGEDPQPAPSAAEDR-QARQPQQGVKADCGERP 5156 G A +P H G +R D+V G+G D +P AE R A + G E+P Sbjct: 32 GPAPEPAAKP--HDGLDRRRDEV---GAGHDGRPEEGEAEKRHDAEHDRHGPPGQLDEQP 86 Query: 5157 TGAQRQPGKHHGEGLQGDGDAKSAH 5231 G + HG G GD H Sbjct: 87 DGEHDAGNRDHGVG-NAFGDGLDVH 110 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 179,974,943 Number of Sequences: 14420 Number of extensions: 3930003 Number of successful extensions: 14683 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 6313 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 14656 length of database: 3,019,461 effective HSP length: 114 effective length of database: 1,375,581 effective search space used: 16357033671 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig17 (33,765 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817564.1|gp117 412 e-115 ref|NP_818503.1|gp203 379 e-104 ref|YP_024521.1|putative DNA repair protein 122 3e-27 ref|NP_818252.1|gp201 116 1e-25 ref|YP_164688.1|recombinase A 101 4e-21 ref|YP_195169.1|RecA-like recombination protein 80 1e-14 ref|NP_049656.2|UvsX RecA-like recombination protein 76 2e-13 ref|NP_852553.1|hypothetical protein 68 7e-11 ref|NP_891595.1|UvsX 65 6e-10 ref|NP_899256.1|UvsX 63 2e-09 ref|NP_861734.1|UvsX RecA-like recombination protein 62 3e-09 ref|NP_943894.1|UvsX 59 2e-08 ref|NP_536425.1|putative helix-turn-helix transcriptional regulator 38 0.074 ref|NP_945111.1|gp80 38 0.074 ref|NP_073686.1|terminal protein (TP) 38 0.074 ref|NP_695143.1|repressor 37 0.17 ref|NP_852574.1|Collagen triple helix repeat protein 36 0.28 ref|NP_665986.1|unknown 35 0.37 >ref|NP_817564.1|gp117 Length = 320 Score = 412 bits (1060), Expect = e-115 Identities = 203/317 (64%), Positives = 260/317 (82%), Gaps = 1/317 (0%) Frame = -2 Query: 9911 ALDAALAQIDKQFGKGSVMRLGDEVRAPIEVIPTGSIALDVALGIGGLPRGRVVEIYGPE 9732 +L ALA++DK+FG GS M+LGD+ + ++VIPTGSIALD ALGIGG PRGRVVEIYGPE Sbjct: 2 SLKEALAEVDKRFGAGSAMKLGDKPQT-VDVIPTGSIALDGALGIGGYPRGRVVEIYGPE 60 Query: 9731 SSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDTGEQALEI 9552 SSGK+T+ LHAVANAQ+ GG AA+IDAEH+LDPEYA LGVD D L+V QPDTGEQALEI Sbjct: 61 SSGKSTLCLHAVANAQKAGGNAAYIDAEHSLDPEYAKALGVDLDNLVVVQPDTGEQALEI 120 Query: 9551 MDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRLSQTKTT 9372 +D+L+ SG L ++V+DSVAALVPRAE+EGD+GDSHVGL ARLMSQA+RK+TG +S T T Sbjct: 121 VDLLVKSGELSIVVVDSVAALVPRAELEGDIGDSHVGLHARLMSQAMRKLTGTISSTNTL 180 Query: 9371 AIFINQLREKIG-VFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSVGNRTKAKIV 9195 +++NQLREKIG V +G ETTTGGKAL+FYAS+R+DVRRI T KEG ++VGNRT+ K+V Sbjct: 181 TLWVNQLREKIGNVGYGPNETTTGGKALRFYASVRMDVRRIATEKEGDEAVGNRTRVKVV 240 Query: 9194 KNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGLIKKSGSWFTYDGDQLGQGMENSRR 9015 KNK+APP + AEF ++YG+GISRE ++D+ V GL+KKSG+WF Y + QG + + Sbjct: 241 KNKLAPPHRNAEFSVVYGEGISREVELLDLAVSQGLVKKSGAWFKYGDKNVAQGKPKAVQ 300 Query: 9014 FLRDNPELAAELERLIK 8964 +L+ NP++ +E+ I+ Sbjct: 301 WLKANPDITDSIEQAIR 317 >ref|NP_818503.1|gp203 Length = 442 Score = 379 bits (972), Expect = e-104 Identities = 189/360 (52%), Positives = 260/360 (72%), Gaps = 1/360 (0%) Frame = -3 Query: 14347 IVASLTETLNQFNVDAQVTGFSRGPTVTRYEIELSPGTKVERVTALSKNISYAVASSDVR 14168 I A + L +F+++A+VTG + GP+VTRYEI L PG ++++V L ++YA+A+ VR Sbjct: 9 ISAQIISALREFDIEAKVTGRTDGPSVTRYEITLGPGVRIQKVAQLQSQLAYALATESVR 68 Query: 14167 ILSPIPGKSAIGIEIPNTDRETVSLGDVLRSQNARRTDHPMVMGVGKDVEGGYVVANLAK 13988 +++PIPGK+A+GIE+P +R+TV L ++ DHP+ + VGKDVEG + NLAK Sbjct: 69 VVAPIPGKTAVGIELPRPERQTVRLQHIVPED-----DHPLTVAVGKDVEGKDISLNLAK 123 Query: 13987 MPHLLVAGATGAGKSSFVNSMITSILMRATPDEVRMVMVDPKRVELTAYEGVPHLITPII 13808 MPHLLVAGATG+GKSSF+NSM+ S+L RATPD V+++M+DPK VELT Y G+PHL+ P++ Sbjct: 124 MPHLLVAGATGSGKSSFINSMLVSLLYRATPDRVKLIMIDPKCVELTPYNGIPHLLQPVV 183 Query: 13807 TNPKKAAEALQWVVREMDARYDDLANYGFKHIDDFNKAVRAGKVHPPVDSKRVIRPYPYL 13628 T +A + L+W+ EMD RY + G +H + PY+ Sbjct: 184 TEADEAVKTLRWLTVEMDDRYRQMQEAGVRHAEKLG--------------------LPYI 223 Query: 13627 LVIVDELADLMMVA-PRDVEDSIVRITQLARAAGIHLVLATQRPSVDVVTGLIKANVPSR 13451 +V+VDELADLMM ++VE +IVRI Q ARAAGIHLVLATQRPSVDVVTGLIK+NVPSR Sbjct: 224 VVVVDELADLMMGGYKKEVEANIVRIAQKARAAGIHLVLATQRPSVDVVTGLIKSNVPSR 283 Query: 13450 MAFATSSVTDSRVVLDQPGAEKLIGQGDALFLPMGASKAMRVQGAWVTESEIHKVVEHVK 13271 ++FAT+S+TDSRV+LD+ GAE+L+G GD LFLP+GA A+R+QGA+V++ EI V +V+ Sbjct: 284 LSFATASLTDSRVILDEGGAEQLMGMGDGLFLPVGARSAIRIQGAFVSDGEIEAAVNNVR 343 >ref|YP_024521.1|putative DNA repair protein Length = 418 Score = 122 bits (305), Expect = 3e-27 Identities = 107/345 (31%), Positives = 160/345 (46%), Gaps = 40/345 (11%) Frame = -2 Query: 9851 LGDEVRAPIE-VIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQG 9675 L D RA I+ VIPT D LG GG+P GR+ E+YG SGK+T A+H A + G Sbjct: 29 LSDTNRADIKNVIPTMVPQYDYILG-GGIPLGRLTEVYGLTGSGKSTFAVHLSRIATQLG 87 Query: 9674 GIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDTG--EQALEIMDMLIGS---------- 9531 I +ID E D +LGVD L Q G + +E+ +G Sbjct: 88 VITIWIDIEGTADNNRMEQLGVDVSKLFSIQSGEGRLKNTVELSVEQVGKELEYWIDTFN 147 Query: 9530 ----GSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIF 9363 G V + DS+ A + EI+G + + +GL+A + + +T +L+ T T I Sbjct: 148 EKIPGVPIVFIWDSLGATRTQKEIDGGIDEKQMGLKASATQKVINAVTPKLNDTNTGLIV 207 Query: 9362 INQLREKIGV-FFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSV------GNRTKA 9204 INQ R+ + +G P +TGG+A + AS+RI V + LK+ ++ G+ + Sbjct: 208 INQARDDMNAGMYGDPIKSTGGRAFEHSASLRIKVHKASQLKQKSELTGKDEYHGHIMRI 267 Query: 9203 KIVKNKMAPPFKIAEFDI------------IYGQGISREGGIIDMGVEHGLIKKSGSWFT 9060 + K+K++ P + AE D+ I GI E + VE GLI K G+W Sbjct: 268 ETKKSKLSRPGQKAEADLLSDYMVGKEDDPILLNGIDLEHTVYKEAVERGLITK-GAWRN 326 Query: 9059 Y---DGDQLGQGMENSRRFLRDNPELAAEL-ERLIKEKLGVGVKP 8937 Y +G+++ L+DN EL EL R+ E G P Sbjct: 327 YVTLNGEEIKLRDAEWVPVLKDNKELYLELFSRVYGEHFPNGYSP 371 >ref|NP_818252.1|gp201 Length = 362 Score = 116 bits (291), Expect = 1e-25 Identities = 96/348 (27%), Positives = 172/348 (49%), Gaps = 19/348 (5%) Frame = -2 Query: 9896 LAQIDKQFGKGSVMRLGDEVRAPIEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKT 9717 L+ + ++G+ +VM D V P + +G++ALD A+G+GGLP RV+EI G E +GKT Sbjct: 11 LSDVQNKYGENAVMMAKDMVTYP--PVRSGTLALDFAIGVGGLPSDRVIEIGGTEGTGKT 68 Query: 9716 TVALHAVAN--AQRQGGIAAFIDAEHALDPEYAAKLGVD---TDALLVSQPDTGEQALEI 9552 T++L A+ + A +D EH + ++A +L + D ++ +QPD EQA + Sbjct: 69 TLSLLAMQQFLLAQPERFALVLDLEHKMTKDWAVQLVGEELWDDRVIYAQPDHVEQATNM 128 Query: 9551 MDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRLSQTKTT 9372 L+GSG + + DS+ RA IE + VG A +++ R + ++ + Sbjct: 129 YSDLVGSGQICFALFDSIGGAAVRAGIEKEAEKVQVGGNANAITKFARLASNFSAKYRCL 188 Query: 9371 AIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVR-----RIQTLKEGADS-VGNRT 9210 + NQ E++ + T GG K +RI ++ +++T+ G VG + Sbjct: 189 TVGTNQ--ERVDMEGFRRYMTPGGNGWKHACILRIRLKASTQDKVETVVNGEKMVVGRKI 246 Query: 9209 KAKIVKNKMAPPFKIAEFDII------YGQGISREGGIIDMGVEHGLIKKSGSWFTYDGD 9048 A+IVKN++A P + A + + YG GI I+ + + G+IK+ S++ + Sbjct: 247 HAQIVKNQLAAPGRSAWWWMYHVPTEEYGFGIDTLDEIVRLAILTGVIKQRVSYYDHPAL 306 Query: 9047 QLG--QGMENSRRFLRDNPELAAELERLIKEKLGVGVKPAEAEKEASP 8910 + G +GM + + + D+ L ++ E L V + E +P Sbjct: 307 ENGTVKGMTSLSKAIGDDEALR---NTIVSETLAVLKTDSSLLAEVAP 351 >ref|YP_164688.1|recombinase A Length = 405 Score = 101 bits (252), Expect = 4e-21 Identities = 94/328 (28%), Positives = 154/328 (46%), Gaps = 31/328 (9%) Frame = -2 Query: 9824 EVIPTGSIALDVALGIGGLPR-GRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAE 9648 + IPT ALD L + G+P GRV E++G SSGK+T+ + NA + I + D E Sbjct: 32 DYIPTLIPALDKNL-VSGIPSSGRVTEVFGLPSSGKSTLMGLVMKNALKMNVIPIYFDVE 90 Query: 9647 HALDPEYAAKLGVDTDALLVSQPDTGEQAL-------EIMDMLI---------GSGSLDV 9516 +D E LGVD ++ P+ + EI + ++ S + Sbjct: 91 ETMDSERLEGLGVDPSKVITVTPEINKDNTVTPLYIEEITNYIVNMAAKIHSQSSELTSM 150 Query: 9515 IVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIG 9336 +IDSV + E D + VG QA+ ++ RK+ LS I +NQ R+ + Sbjct: 151 FIIDSVGFTQSKLEANTDSESATVGQQAKALAIMARKVQANLSYNNGMLIGLNQGRDDMK 210 Query: 9335 VFFGSPE----TTTGGKALKFYASIRIDVRRIQTLK---EGADSVGNRTKAKIVKNKMAP 9177 +P+ + GGK + + S R+ +++ +K ++VG TK +VK+K+ Sbjct: 211 A--PNPKYAQTKSLGGKGWEHFTSSRLRIQKTTAIKMHNSDKNAVGFDTKVTVVKSKVGD 268 Query: 9176 PFKIA-EFDIIYGQGISREGGIIDMGVEHGLIKKSGSWFTY---DGDQL-GQGMENSRRF 9012 A ++ +G RE I GV+ G+IK SG W+TY DG+Q+ QG + + Sbjct: 269 NVTDAVTIKLLGARGFDRETNIFYGGVDEGIIKGSG-WYTYVNDDGEQIKKQGWVDFVSY 327 Query: 9011 LR--DNPELAAELERLIKEKLGVGVKPA 8934 L+ + E A E+ R + K+ + PA Sbjct: 328 LKSDEGKETANEIWRKVALKVFPDIYPA 355 >ref|YP_195169.1|RecA-like recombination protein Length = 343 Score = 80.1 bits (196), Expect = 1e-14 Identities = 71/301 (23%), Positives = 137/301 (45%), Gaps = 19/301 (6%) Frame = -2 Query: 9818 IPTGSIALDVALG---IGGLPRGRVVEIYGPESSGKTTVALHAV---ANAQRQGGIAAFI 9657 + TGS + + GG+P ++ + G +GKT L V N G+ F Sbjct: 32 VDTGSYIFNALVSGSIFGGIPSNKITALAGESGTGKTFFCLSVVRNFLNTDPDAGVIYF- 90 Query: 9656 DAEHALDPEYAAKLGVDTDALLVSQPDTGE----QALEIMDMLIGSGSLD----VIVIDS 9501 + E A+ + G+D+ +++ DT E QA+ I+D + + + V+DS Sbjct: 91 ETESAISKQMIESRGIDSTRMIIFPVDTIEDFRTQAVRIIDKYMEQNKSERKPLMFVLDS 150 Query: 9500 VAALVPRAEIEGDMGDSHVG--LQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFF 9327 + L + E+E D V +A+++ A R +T ++ + + N + +G + Sbjct: 151 LGMLATKKEVEDASNDKQVRDMTKAQIVKSAFRILTLKMGKANIPMLVTNHTYDVVGSYV 210 Query: 9326 GSPETTTGGKALKFYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDII 9147 + E GG LK+ AS + + + + K+G D VGN K + K+++ E + Sbjct: 211 PTKE-MGGGSGLKYSASTIVYLGK-KKEKDGTDLVGNIIKCEAKKSRLTREGSKVETRLF 268 Query: 9146 YGQ-GISREGGIIDMGVEHGLIKKSGSWFTYDGDQL--GQGMENSRRFLRDNPELAAELE 8976 + Q G+ R G++++G GL K + + +G ++ Q + N F + E+ EL+ Sbjct: 269 FDQRGLERYYGMLELGERAGLWKNTAGRYEINGKKVYGKQILANPDEFFTE--EILQELD 326 Query: 8975 R 8973 + Sbjct: 327 K 327 >ref|NP_049656.2|UvsX RecA-like recombination protein Length = 391 Score = 75.9 bits (185), Expect = 2e-13 Identities = 70/294 (23%), Positives = 131/294 (44%), Gaps = 8/294 (2%) Frame = -2 Query: 9920 RQKALDAALAQIDKQFGKGSVMRLGDEVRAPIEVIPTGSIALDVALGIGGLPRGRVVEIY 9741 + + + A+ +++ + D VR I P +IAL + GG+ G ++ + Sbjct: 5 KSRLIKASTSKLTAELTASKFFNEKDVVRTKI---PMMNIALSGEI-TGGMQSGLLI-LA 59 Query: 9740 GPESSGKTTVALHAVANAQRQ--GGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDTGE 9567 GP S K+ L V++ RQ + F D+E + P Y +GVD + ++ + + E Sbjct: 60 GPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLE 119 Query: 9566 Q-ALEIMDML--IGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVG--LQARLMSQALRKI 9402 Q +++++ L I G V+ IDS+ L + E E + + V +A+ M R + Sbjct: 120 QLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIV 179 Query: 9401 TGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSV 9222 T S I IN E +F +T GG Y++ + + + +K+G+D Sbjct: 180 TPYFSTKNIPCIAINHTYETQEMF---SKTVMGGGTGPMYSADTVFIIGKRQIKDGSDLQ 236 Query: 9221 GNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHG-LIKKSGSWF 9063 G + + K++ D+ + GI G++DM +E G ++K W+ Sbjct: 237 GYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYSGLLDMALELGFVVKPKNGWY 290 >ref|NP_852553.1|hypothetical protein Length = 264 Score = 67.8 bits (164), Expect = 7e-11 Identities = 48/205 (23%), Positives = 104/205 (50%), Gaps = 2/205 (0%) Frame = -3 Query: 13990 KMPHLLVAGATGAGKSSFVNSMITSILMRATPDEVRMVMVDPKR--VELTAYEGVPHLIT 13817 K PH+++ G T GK+ F+ ++T+ L+ A P+ + ++D K +E + + G+ ++ Sbjct: 15 KTPHMVLGGLTRMGKTVFMKVLLTT-LIEANPENAHVYLIDLKEKGLEFSEFSGLKQVVE 73 Query: 13816 PIITNPKKAAEALQWVVREMDARYDDLANYGFKHIDDFNKAVRAGKVHPPVDSKRVIRPY 13637 + + +KA L+ ++++++ R + G+K+I + + R + VD V+ P Sbjct: 74 -VSDSVEKAHHVLKQIMKKIEERGKFMKENGYKNIVETKEKDRYFVI---VDEGAVLAPA 129 Query: 13636 PYLLVIVDELADLMMVAPRDVEDSIVRITQLARAAGIHLVLATQRPSVDVVTGLIKANVP 13457 L ++++ + + + + I ++ G L+LATQ P+V + ++K Sbjct: 130 KGLPRHINKIRE-------ECQYMLSYIATVSGGLGFRLILATQYPTVTSIPSVVKQMSD 182 Query: 13456 SRMAFATSSVTDSRVVLDQPGAEKL 13382 +++ F + S VVLD+ G E L Sbjct: 183 AKLGFRLPTYKASEVVLDESGLETL 207 >ref|NP_891595.1|UvsX Length = 356 Score = 64.7 bits (156), Expect = 6e-10 Identities = 64/240 (26%), Positives = 104/240 (43%), Gaps = 13/240 (5%) Frame = -2 Query: 9740 GPESSGKTTVALHAVANAQRQGGIAA--FIDAEHALDPEYAAKLGVDTDALL-VSQPDTG 9570 GP K+ + L V+ +Q AA F D+E + Y +GVD D ++ V + Sbjct: 59 GPSKHFKSNMGLTCVSAYMKQNPDAACLFFDSEFGITSAYLESMGVDPDRVVHVPIKNIE 118 Query: 9569 EQALEIMDML--IGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVG--LQARLMSQALRKI 9402 E EIM+ L I +I IDS+ L + E+E + + +A+ + R + Sbjct: 119 ELKFEIMNQLEQITREDKVIIFIDSIGNLASKKEVEDAINEKSAQDMTRAKALKGLFRMV 178 Query: 9401 TGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSV 9222 T L+ I IN E +F S +GG + A+ + R Q KEG + Sbjct: 179 TPYLTMNDIPCIAINHTYETQEMF--SKTVMSGGTGAMYSANEVFIIGRRQQ-KEGTEIT 235 Query: 9221 G-----NRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHG-LIKKSGSWFT 9060 G N K++ VK K P + + GI G++++ VE G ++K S W++ Sbjct: 236 GYDFILNAEKSRTVKEKSKFPISVT-----FSGGIDPYSGLLELAVELGWVVKPSNGWYS 290 >ref|NP_899256.1|UvsX Length = 366 Score = 62.8 bits (151), Expect = 2e-09 Identities = 66/261 (25%), Positives = 110/261 (42%), Gaps = 23/261 (8%) Frame = -2 Query: 9776 GGLPRGRVVEIYGPESSGKTTVALHAVANAQRQ--GGIAAFIDAEHALDPEYAAKLGVDT 9603 GGL G V + GP K+ + L VA ++ + FID E + P Y GVD Sbjct: 49 GGLTSGLTV-LAGPSKHFKSNLGLVGVAAYLKKYPDAVCVFIDTEFGITPSYLRSQGVDP 107 Query: 9602 DALLVSQPDTGEQ-----ALEIMDMLIGSGSLD--------VIVIDSVAALVPRAEIEGD 9462 D +L Q ++ E+ A ++ D+ + + IDSV + EI+ Sbjct: 108 DRVLHIQCESVERMKFEMANQLKDLAERKRAKKAGEEPDRVIFFIDSVGNVASAKEIDDA 167 Query: 9461 MGDSHVG--LQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 9288 + V +A+ + R IT + I IN + ++ S +GG + Sbjct: 168 QNEKSVADMSRAKQLKSLFRIITPYFTMLDIPCIAINHTYQTQEIY--SKTVMSGGTGIM 225 Query: 9287 FYASIRIDVRRIQTLKEGADSVG-----NRTKAKIVKNKMAPPFKIAEFDIIYGQGISRE 9123 + A I + + Q K+G D +G N K++ VK KM P + Y GI Sbjct: 226 YSADTVIILGK-QQEKDGKDIIGYHFIMNIEKSRFVKEKMKVPLTVT-----YENGIDPF 279 Query: 9122 GGIIDMGVEHG-LIKKSGSWF 9063 G++D+ ++ G ++K S W+ Sbjct: 280 SGLLDIALQTGHVVKPSNGWY 300 >ref|NP_861734.1|UvsX RecA-like recombination protein Length = 390 Score = 62.4 bits (150), Expect = 3e-09 Identities = 68/294 (23%), Positives = 122/294 (41%), Gaps = 8/294 (2%) Frame = -2 Query: 9920 RQKALDAALAQIDKQFGKGSVMRLGDEVRAPIEVIPTGSIALDVALGIGGLPRGRVVEIY 9741 + + + A+ +++ K + DEV I ++ +IAL AL GL G + Sbjct: 5 KSRLIKASTSKMTADLTKSKLFNNRDEVPTRIPML---NIALGGALN-AGLQSGLTI-FA 59 Query: 9740 GPESSGKTTVALHAVANAQRQ--GGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDTGE 9567 P KT L VA ++ I F D+E Y +GVD D ++ + + E Sbjct: 60 APSKHFKTLFGLTMVAAYMKKYKDAICLFYDSEFGASESYFRSMGVDLDRVVHTPIQSVE 119 Query: 9566 Q-ALEIMDML--IGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVG--LQARLMSQALRKI 9402 Q +++ + L I G +I IDS+ + E E + + VG +A+ + R + Sbjct: 120 QLKVDMTNQLDAIERGDKVIIFIDSIGNTASKKETEDALNEKVVGDMSRAKALKSLFRIV 179 Query: 9401 TGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSV 9222 T L+ + IN +IG + P+ GG Y++ + + +KEG + Sbjct: 180 TPYLTIKDIPCVAINHTAMEIGGLY--PKEIMGGGTGILYSANTVFFISKRQVKEGTELT 237 Query: 9221 GNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHG-LIKKSGSWF 9063 G K K++ + + GI G+++M E G ++K W+ Sbjct: 238 GYDFTLKAEKSRTVKEKSTFPITVNFDGGIDPFSGLLEMATEIGFVVKPKAGWY 291 >ref|NP_943894.1|UvsX Length = 411 Score = 59.3 bits (142), Expect = 2e-08 Identities = 67/286 (23%), Positives = 129/286 (45%), Gaps = 15/286 (5%) Frame = -2 Query: 9818 IPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQ--GGIAAFIDAEH 9645 +P ++A+ L GGL G V + GP K+ ++L VA R+ + F D E Sbjct: 48 VPLLNLAMSGELD-GGLTPGLTV-LAGPSKHFKSNLSLVFVAAYLRKYPDAVCIFFDNEF 105 Query: 9644 ALDPEYAAKLGVDTDALLVSQ-PDTGEQALEIMDML--IGSGSLDVIVIDSVAALVPRAE 9474 P Y GVD ++ + E +I+ L I G ++ +DS+ + E Sbjct: 106 GSTPGYFESQGVDISRVIHCPFKNIEELKFDIVKKLEAIERGDRVIVFVDSIGNAASKKE 165 Query: 9473 IEGDMGDSHVG--LQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGG 9300 I+ + + V +A+ + R +T L+ AI + + ++ S + +GG Sbjct: 166 IDDAIDEKSVSDMTRAKQIKSLTRMMTPYLTVNDIPAIMVAHTYDTQEMY--SKKVVSGG 223 Query: 9299 KALKFYASIRIDVRRIQTLKEGADSVG-----NRTKAKIVKNKMAPPFKIAEFDIIYGQG 9135 + + + I + R Q K+G + +G N K++ VK + P ++ + G Sbjct: 224 TGITYSSDTVIIIGRQQE-KDGKELLGYNFVLNMEKSRFVKEQSKLPLEVT-----FQGG 277 Query: 9134 ISREGGIIDMGVEHG-LIKKSGSWFT--YDGDQLGQGMENSRRFLR 9006 I+ G++D+ +E G ++K S WF+ + ++ G+ +E R++ R Sbjct: 278 INTYSGMLDIALEVGFVVKPSNGWFSRAFLDEETGELVEEDRKWRR 323 >ref|NP_536425.1|putative helix-turn-helix transcriptional regulator Length = 128 Score = 37.7 bits (86), Expect = 0.074 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 4/88 (4%) Frame = -1 Query: 11427 KDVGLADQAKSEQKERKM--VVLRHEI-GD-VLRDVRQRQGRTLREVSHSARVSLGYLSE 11260 +D L QAK+ R++ VL E+ GD +R R T ++ +A +S YLS+ Sbjct: 34 EDEALYAQAKASDDGRRIPAAVLDAELAGDHPVRAWRNHLRMTQDALAAAAGISKPYLSQ 93 Query: 11259 VERGQKEASSELLSSICSALDVPLSSML 11176 +E Q+ ++++LS I SAL VP+ ++ Sbjct: 94 IETRQRVGTTDVLSKIASALAVPVDDLI 121 >ref|NP_945111.1|gp80 Length = 128 Score = 37.7 bits (86), Expect = 0.074 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 4/88 (4%) Frame = -1 Query: 11427 KDVGLADQAKSEQKERKM--VVLRHEI-GD-VLRDVRQRQGRTLREVSHSARVSLGYLSE 11260 +D L QAK+ R++ VL E+ GD +R R T ++ +A +S YLS+ Sbjct: 34 EDEALYAQAKASDDGRRIPAAVLDAELAGDHPVRAWRNHLRMTQDALAAAAGISKPYLSQ 93 Query: 11259 VERGQKEASSELLSSICSALDVPLSSML 11176 +E Q+ ++++LS I SAL VP+ ++ Sbjct: 94 IETRQRVGTTDVLSKIASALAVPVDDLI 121 >ref|NP_073686.1|terminal protein (TP) Length = 265 Score = 37.7 bits (86), Expect = 0.074 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 8/142 (5%) Frame = -3 Query: 8671 SRLQLARKLAERNVPDDVAESVLDRFEEVRLVDDAEFADMWV-RSRSQTRKLARGALRRE 8495 S+ +L L++ +VAE +LDRF +V ++ + V ++ K +G R E Sbjct: 87 SKTELDEILSDTKKAQEVAEKILDRFNDVEVISGGQSTGFTVGENKELLAKPDKGFGRIE 146 Query: 8494 LAD-------KGIEPDVAARALEQLSDEAEESAARQLVERKLKASADLTDRAERDKVTRR 8336 D +G++ A RA ++ + E + R+L + ++ S + T +E D V + Sbjct: 147 DFDFNKVKTQEGLD-RFANRAKKRSQEAYYEESLRRLQDNFIRNSVEGTFNSEADDVVSK 205 Query: 8335 LASMLARKGYQPSQAFRIVGEV 8270 L S+ A Y + F I E+ Sbjct: 206 LRSLPADDFY---ECFSIYNEI 224 >ref|NP_695143.1|repressor Length = 132 Score = 36.6 bits (83), Expect = 0.17 Identities = 20/60 (33%), Positives = 33/60 (55%) Frame = -1 Query: 11355 IGDVLRDVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLSSICSALDVPLSSML 11176 IG+ L+++R QG+T EV+ S +S S +E + E +ELL + S +V +L Sbjct: 6 IGNRLKELRNMQGKTQDEVAKSIGISRARYSHLENERNEPDNELLKLLASYYEVSTDYLL 65 >ref|NP_852574.1|Collagen triple helix repeat protein Length = 536 Score = 35.8 bits (81), Expect = 0.28 Identities = 33/116 (28%), Positives = 40/116 (34%), Gaps = 7/116 (6%) Frame = -1 Query: 8529 PGNLPGGRCGVSSRTRASSRTLQPGPWSSSATKQRSRLPANSLNAS*RPQRTSRTGPNGT 8350 P LP G G + T + T GP S+ P S + T TGP G Sbjct: 24 PFTLPTGPTGSTGPTGPTGSTGPTGPTGSTGPTG----PTGSTGLTGLTGPTGPTGPTGP 79 Query: 8349 KSPVG-------WPPCSPGRDTSPRRPSGLWGRSWRPPPVNGRQRNSCEPVPLTGE 8203 P G P P DT P P+G G S P G + P TG+ Sbjct: 80 TGPTGPTGSTGLTGPTGPNSDTGPTGPTGPTGPSDGPTGPTGATGPTGPPDGPTGD 135 >ref|NP_665986.1|unknown Length = 213 Score = 35.4 bits (80), Expect = 0.37 Identities = 17/36 (47%), Positives = 23/36 (63%) Frame = -2 Query: 1625 SSSPWARTPASRTSPRPWAVRPRSWARKWSGSGSGL 1518 +SS +RT R SP P A R R+ AR+WSG +G+ Sbjct: 37 ASSSRSRTTTRRRSPSPIASRRRTSARRWSGRSAGI 72 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 162,066,097 Number of Sequences: 14420 Number of extensions: 3517669 Number of successful extensions: 14108 Number of sequences better than 0.5: 18 Number of HSP's better than 0.5 without gapping: 6000 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 14052 length of database: 3,019,461 effective HSP length: 114 effective length of database: 1,375,581 effective search space used: 15323972340 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig18 (39,654 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_861801.1|Tk thymidine kinase 107 1e-22 ref|NP_049875.1|gp52 topoisomerase II, medium subunit 106 2e-22 ref|NP_899436.1|thymidine kinase 105 3e-22 ref|NP_944225.1|gp52 topoisomerase II medium subunit 100 1e-20 ref|NP_049719.1|Tk thymidine kinase 99 3e-20 ref|NP_861955.1|gp52 topoisomerase II, medium subunit 99 3e-20 ref|NP_899529.1|topoisomerase II small subunit 96 3e-19 ref|NP_891658.1|thymidine kinase 95 6e-19 ref|NP_944043.1|thymidine kinase 94 8e-19 ref|NP_891840.1|topoisomerase medium subunit 90 2e-17 ref|NP_932455.1|thymidine kinase 85 6e-16 ref|NP_932596.1|topoisomerase II medium subunit 82 4e-15 ref|NP_803328.1|dUTPase 75 6e-13 ref|NP_958659.1|77ORF021 75 6e-13 ref|NP_899269.1|deoxyuridine 5'-triphosphate nucleotidohydrolase 74 1e-12 ref|NP_075491.1|phi PVL ORF 53 analogue 73 2e-12 ref|NP_058491.1|dUTPase 73 2e-12 ref|NP_803278.1|dUTPase 72 5e-12 ref|NP_943888.1|hypothetical protein 67 1e-10 ref|NP_046717.1|putative dUTPase 66 2e-10 ref|YP_006959.1|putative deoxyUTP pyrophosphatase 63 2e-09 ref|NP_542557.1|deaminase protein deoxycytidine triphosphate-lik... 47 1e-04 ref|NP_046572.1|ABC transporter 45 4e-04 ref|NP_944302.1|conserved phage protein 39 0.039 ref|YP_164321.1|hypothetical protein 38 0.066 ref|NP_542287.1|unknown 37 0.11 ref|NP_958267.1|hypothetical protein 37 0.11 ref|NP_612899.1|hypothetical protein 37 0.19 ref|NP_944921.1|putative tail fiber protein GP37 37 0.19 ref|NP_945069.1|gp38 35 0.43 ref|NP_777335.1|coat protein 35 0.43 >ref|NP_861801.1|Tk thymidine kinase Length = 193 Score = 107 bits (266), Expect = 1e-22 Identities = 68/205 (33%), Positives = 111/205 (54%), Gaps = 3/205 (1%) Frame = +3 Query: 16392 VAELVFFSGTMDCGKSTLALQMDHNHRARGRGGV--RFSRNDRAGGARISSRLGLETDCV 16565 +A L+F M+ GKS L HN++ RG G + + + + R I SR+G+ D Sbjct: 1 MASLIFTYAAMNAGKSASLLTAAHNYKERGMGVLVLKPAIDTRDSKGEIVSRIGIRQDAN 60 Query: 16566 EVLDTTDFWDEVIERRTRGLRVDYLICDEAQFYSPLQVEQLARIVDEIDVDVFAFGISAD 16745 + D + E + + + DEAQF + +V QL+RIVD +V V A+G+ D Sbjct: 61 IITKDMDIF-EFYKWAAAQKDIHCVFVDEAQFLTTEKVYQLSRIVDVYNVPVMAYGLRTD 119 Query: 16746 FRTRLFPGSQRLIELADRVQVLQVEALCWCGRRATHNAR-TVDGVMVTEGAQVVVGDVDM 16922 F+ LF GSQ L+ +AD+ +++++ +C CG++AT AR T DG+ +T+G+Q+ +GD D Sbjct: 120 FKGNLFEGSQALMAIADK--LVELKGVCHCGKKATMVARVTEDGLPITDGSQIEIGDTDR 177 Query: 16923 AGDPASASADHAPVVGYETLCRRHF 16997 Y +LCR+H+ Sbjct: 178 ----------------YVSLCRKHW 186 >ref|NP_049875.1|gp52 topoisomerase II, medium subunit Length = 442 Score = 106 bits (265), Expect = 2e-22 Identities = 118/472 (25%), Positives = 208/472 (44%), Gaps = 27/472 (5%) Frame = -2 Query: 11546 DVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGL-RPDRGHVKSARVV 11370 D+ S ++ L YA + +RA+P+ DG KPVQR ++ ++ D+ H K A + Sbjct: 7 DLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFH-KLASIA 65 Query: 11369 GEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAAPRYTEARLAAA 11193 G V + HG+ + DA MA ++ PL+DG GNFGS AA RY AR++ Sbjct: 66 GGVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKN 125 Query: 11192 ALSLTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMATNMAPHNLVEV 11013 ++ + V + D + P P +L+NG +GIA G AT + PH++ V Sbjct: 126 FYNVYKDTEYAPV----HQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSV 181 Query: 11012 ISAARHLIANPEATLEDLMRFVPGPDLPT-GGRIVGLDGIRDAYATGRGSFKTRAKVEVE 10836 A + + T P + P G +V +DG + RG++K + Sbjct: 182 KKAVLQALQGKKVT-------KPKVEFPEFRGEVVEIDGQYEI----RGTYKFTS----- 225 Query: 10835 QLSARRTGLVVTELPYMVGPEKVIEKIKDAVNGKKLTGISDIVDLTDRKHGLRLVIELKN 10656 RT + +TE+PY E + KI D + K D +HG ++ + Sbjct: 226 -----RTQMHITEIPYKYDRETYVSKILDPLENKGFITWDDACG----EHGFGFKVKFRK 276 Query: 10655 GFNPNAVLQQLYRYSPMEDSFGI-----NNVTLVD--GQPQTL-GLVQLLSVYVDHRINV 10500 ++ + ++ R++ + FG+ N+T+++ G+ Q +V L+ +V+ R Sbjct: 277 EYSLSDNEEE--RHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTY 334 Query: 10499 VRRR---------TAFRLEKKKDRLHLVEGLLIAIVDID-----EVIQIIRSSDEVSAAR 10362 V++R +AFRL K H ++ ++ + + E+ + + D S+ Sbjct: 335 VQKRIDNKIKETESAFRLAFAK--AHFIKKVISGEIVVQGKTRKELTEELSKIDMYSSYV 392 Query: 10361 ERL--MSIYDLTEIQANYILELRLRQLTKYSRIELEKEQDQLKREIAELEAI 10212 ++L M+I+ +T +A + E K E K D + +LE I Sbjct: 393 DKLVGMNIFHMTSDEAKKLAE---EAKAKKEENEYWKTTDVVTEYTKDLEEI 441 >ref|NP_899436.1|thymidine kinase Length = 194 Score = 105 bits (262), Expect = 3e-22 Identities = 71/210 (33%), Positives = 107/210 (50%), Gaps = 6/210 (2%) Frame = +3 Query: 16392 VAELVFFSGTMDCGKSTLALQMDHNHRARGRGGVRFS--RNDRAGGA-RISSRLGLETDC 16562 +A+L + M+ GKS LQ HN+ G F+ ++DR GG +ISSR+GLE D Sbjct: 1 MAKLYYNYSAMNAGKSAQLLQAAHNYEQTGSTVWYFNYYQDDRFGGVGKISSRIGLEHDA 60 Query: 16563 VEVLDTTDFWDEVIERRTRGLRVDYLICDEAQFYSPLQVEQLARIVDEIDVDVFAFGISA 16742 V + DF D + R + DE QF + QV QLA +VD+ ++ V +GI Sbjct: 61 VLYSEEFDFIDYALFERVPAA----IFVDECQFLTEKQVLQLATLVDQYNIPVLCYGIRN 116 Query: 16743 DFRTRLFPGSQRLIELADRVQVLQVEALC---WCGRRATHNARTVDGVMVTEGAQVVVGD 16913 D+ LF GS L+ AD ++ +++A+C C ++ATH + G VT+G Q +GD Sbjct: 117 DYMGNLFAGSAALMCHADEIR--EIKAMCSVEGCHKKATHIGLYIGGERVTQGEQTYIGD 174 Query: 16914 VDMAGDPASASADHAPVVGYETLCRRHFMR 17003 D Y ++CR+HF+R Sbjct: 175 TD-----------------YRSMCRKHFLR 187 >ref|NP_944225.1|gp52 topoisomerase II medium subunit Length = 438 Score = 100 bits (248), Expect = 1e-20 Identities = 110/461 (23%), Positives = 208/461 (45%), Gaps = 19/461 (4%) Frame = -2 Query: 11558 IVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLRPDRGHVKSA 11379 ++ ++S + E+A I RALP DGLKPVQR IL+ + + R K+A Sbjct: 3 VIKRGISSLVNNEAKEFAMYTIEERALPSMVDGLKPVQRYILFSVLK---NAGREFKKNA 59 Query: 11378 RVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFG--SLDDGPAAPRY---T 11214 V G + + HG+ A DA MA ++ P+I G GNFG ++ +G AA RY + Sbjct: 60 AVAGVISEYGYNHGEMAAMDAACLMASTWNNNFPVIQGRGNFGCRAVQEG-AAARYIFCS 118 Query: 11213 EARLAAAALSLTDHLDEDVVD--FVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMATN 11040 + + + L+E D +P Y LP P +L+NG +GIA G AT Sbjct: 119 KHERFESMFKDMELLEESTADGSILPRY--------YLP-ILPTVLLNGVSGIATGFATK 169 Query: 11039 MAPHNLVEVISAARHLIANPEATLEDLM--RFVPGPDLPTGGRIVGLDGIRDAYATGRGS 10866 + PH++ V ++ + + ++ +F G+I+ ++G ++ Sbjct: 170 IMPHSVQSVAKCVEQVLKSGKCDEPEIQFPKFF--------GKILSIEGETQSW------ 215 Query: 10865 FKTRAKVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNGKKLTGISDIVDLTDRKH 10686 KVE + + +T L++ ELP K + + V K+ G D + DR+ Sbjct: 216 -----KVEGDYELSGKTKLIINELPPKYDRLKYVTHLNKLVETDKIVGY-DESKMKDREF 269 Query: 10685 GLRLVIELKNGFNPN--------AVLQQLYRYSPMEDSFGINNVTLVDGQPQTLGLVQLL 10530 + + LK F+ + + Q + +Y + D G N+ D L+ Sbjct: 270 CFK--VTLKRDFDVSHENIIKVFKLSQNVSQYIRVIDQNG--NLKPYDNAS------DLI 319 Query: 10529 SVYVDHRINVVRRRTAFRLEKKKDRLHLVEGLL--IAIVDIDEVIQIIRSSDEVSAARER 10356 +V+ R NV+++R + +++L + + I +V D+++ ++ +V Sbjct: 320 VDFVNFRFNVLQKRIDNAIIATREKLDFAQAKVDFIKLVLADKIVFNRQTRKQVI----E 375 Query: 10355 LMSIYDLTEIQANYILELRLRQLTKYSRIELEKEQDQLKRE 10233 ++ +D + A+ ++++ L +T+ +LEK+ +L++E Sbjct: 376 QINAFDELKTYADQLVQMNLYHMTEDEVAKLEKQVAELQKE 416 >ref|NP_049719.1|Tk thymidine kinase Length = 193 Score = 99.0 bits (245), Expect = 3e-20 Identities = 65/205 (31%), Positives = 107/205 (52%), Gaps = 3/205 (1%) Frame = +3 Query: 16392 VAELVFFSGTMDCGKSTLALQMDHNHRARGRGGV--RFSRNDRAGGARISSRLGLETDCV 16565 +A L+F M+ GKS L HN++ RG + + + + R + SR+G++ + Sbjct: 1 MASLIFTYAAMNAGKSASLLIAAHNYKERGMSVLVLKPAIDTRDSVCEVVSRIGIKQEAN 60 Query: 16566 EVLDTTDFWDEVIERRTRGLRVDYLICDEAQFYSPLQVEQLARIVDEIDVDVFAFGISAD 16745 + D D + E + + + DEAQF QV QL+RIVD +V V A+G+ D Sbjct: 61 IITDDMDIF-EFYKWAEAQKDIHCVFVDEAQFLKTEQVHQLSRIVDTYNVPVMAYGLRTD 119 Query: 16746 FRTRLFPGSQRLIELADRVQVLQVEALCWCGRRATHNARTV-DGVMVTEGAQVVVGDVDM 16922 F +LF GS+ L+ +AD+ +++++A+C CG++A AR + DG V EG Q+ +GD Sbjct: 120 FAGKLFEGSKELLAIADK--LIELKAVCHCGKKAIMTARLMEDGTPVKEGNQICIGDEI- 176 Query: 16923 AGDPASASADHAPVVGYETLCRRHF 16997 Y +LCR+H+ Sbjct: 177 ----------------YVSLCRKHW 185 >ref|NP_861955.1|gp52 topoisomerase II, medium subunit Length = 441 Score = 99.0 bits (245), Expect = 3e-20 Identities = 90/365 (24%), Positives = 162/365 (44%), Gaps = 12/365 (3%) Frame = -2 Query: 11546 DVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLRPDRGHVKSARVVG 11367 ++ S ++ L YA + +RA+P+ DG KPVQR +++ ++ K A + G Sbjct: 7 NLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVHRALDLARGNKEKFHKLASIAG 66 Query: 11366 EVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAAPRYTEARLAAAA 11190 V + HG+++ DA MA ++ PL+DG GNFGS AA RY AR++ Sbjct: 67 GVADLGYHHGESSAQDAGALMANTWNNNYPLLDGQGNFGSRTVQKAAASRYIFARVSKNF 126 Query: 11189 LSLTDHLDEDVVDFVPNY-DNQLTQPDVLPAAFPNLLVNGATGIAVGMATNMAPHNLVEV 11013 ++ ++ P + D + P P +L+NG +GIA G ATN+ PH+ V Sbjct: 127 YNVYKD-----TEYAPAHEDKEHIPPKFYLPIIPTVLLNGVSGIATGYATNILPHSFKSV 181 Query: 11012 ISAARHLIANPEATLEDLMRFVPGPDLPT-GGRIVGLDGIRDAYATGRGSFKTRAKVEVE 10836 A + T P + P G + +DG + + G++K + Sbjct: 182 KKAVLQALQGKNVT-------KPKVEFPEFRGEVHEVDGRYEIH----GTYKFTS----- 225 Query: 10835 QLSARRTGLVVTELPYMVGPEKVIEKIKDAVNGKKLTGISDIVDLTDRKHGLRLVIELKN 10656 RT + +TE+PY E + K+ D + K L D +HG ++ + Sbjct: 226 -----RTQMQITEIPYKFDRETYVSKVLDPLEDKGLISWEDDCG----EHGFGFKVKFRK 276 Query: 10655 GFN-PNAVLQQLYRYSPMEDSFGI-----NNVTLVDGQPQTL---GLVQLLSVYVDHRIN 10503 ++ P+ + R+ + F + N+T+++ + + +V L+ +V+ R Sbjct: 277 EYSLPD---DEELRHEKIMKDFSLIERRSQNITVINEKGKLAVYDNVVDLIKDFVEVRKT 333 Query: 10502 VVRRR 10488 V++R Sbjct: 334 YVQKR 338 >ref|NP_899529.1|topoisomerase II small subunit Length = 428 Score = 95.9 bits (237), Expect = 3e-19 Identities = 115/474 (24%), Positives = 210/474 (44%), Gaps = 20/474 (4%) Frame = -2 Query: 11543 VTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLRPDRGHVKSARVVGE 11364 ++S + LEYA I +RAL + DGLKPVQR +LY + ++ +G Sbjct: 5 LSSIVNDEALEYAMYTIENRALANGIDGLKPVQRFVLYNV----IKDASTSFDKVAALGS 60 Query: 11363 VMGKL-HPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGS-LDDGPAAPRYTEARLAAAA 11190 + K+ + HG+T+ DA+ MA ++ +P++ G GNFGS + A+ RY A+ Sbjct: 61 SVSKIGYNHGETSAQDALALMAAEWQNNVPIVQGRGNFGSRMVKESASARYVYAK----- 115 Query: 11189 LSLTDHLD---EDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMATNMAPHNLV 11019 L D+ D +D+ + D + P P +L+NG GIA G A N+ PH+ Sbjct: 116 --LHDNFDLYFKDIHLSPEHKDLEHVPPQFYVPVLPMILMNGVQGIATGFACNILPHDPE 173 Query: 11018 EVISAARHLIANPEATLEDLMRFVPGPDLPTGGRIVGLDGIRDAYATGRGSFKTRAKVEV 10839 V A +A E + E +++F P+ G+I L+ + VE+ Sbjct: 174 WVKKAVLEYLAGKEIS-EPVVKF---PEF--YGKIEKLE---------HNKYAQIGTVEI 218 Query: 10838 EQLSARRTGLVVTELP-------YMVGPEKVIEKIKDAVNGKKLTGISDIVDLTDRKHGL 10680 L+A VVTE+P Y++ +K++EK K IS VD T Sbjct: 219 SGLTA-----VVTEIPTGFDHAKYIIELDKLVEKGK----------ISSYVDETSETFQF 263 Query: 10679 RLVIELKNGFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQPQTL---GLVQLLSVYVDHR 10509 R+ + +V++ L ++ +F N+ ++D Q + +L+ +VD R Sbjct: 264 RVRFKRGAKMTEESVIKTL----KLQSTF-TQNINVIDENYQIRHFDDVRELVKWFVDFR 318 Query: 10508 INVVRRRTAFRLEKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEVSAARERLMSIYDLTE 10329 ++ + +R E+ + R L AI + E I+ + S + ++R +L Sbjct: 319 MSFLPKRIQDSTERTEKRASL------AIAKV-EFIKRVVSGTIILFGKKRAEVAAELKA 371 Query: 10328 IQA-----NYILELRLRQLTKYSRIELEKEQDQLKREIAELEAILGSDQRLREL 10182 +A +L + + ++T LEK+ ++E++ + + ++++ Sbjct: 372 DEAFSEHVTELLNMSVDKMTDDEIARLEKDATVAQKELSYWQKTTAQKEFIKDI 425 >ref|NP_891658.1|thymidine kinase Length = 198 Score = 94.7 bits (234), Expect = 6e-19 Identities = 63/215 (29%), Positives = 111/215 (51%), Gaps = 8/215 (3%) Frame = +3 Query: 16392 VAELVFFSGTMDCGKSTLALQMDHNHRARGRGGV--RFSRNDRAGGARISSRLGLETDCV 16565 +A+L F+ +M+ GKST LQ +N+ R + + + ++R + + SR+GL + Sbjct: 1 MAQLYFYYASMNAGKSTSLLQSAYNYTERDMRVLILKPAIDNRDSESEVVSRIGLSAPAI 60 Query: 16566 EVLDTTDFWDEVI-----ERRTRGLRVDYLICDEAQFYSPLQVEQLARIVDEIDVDVFAF 16730 ++ D +D V +RR R D + DEAQF + V L +VD+ ++ V + Sbjct: 61 TFTESDDLFDLVYRESLGKRRPDRWRPDAVFVDEAQFMTKEHVLGLCALVDDANIPVLCY 120 Query: 16731 GISADFRTRLFPGSQRLIELADRVQVLQVEALCWCGRRATHNART-VDGVMVTEGAQVVV 16907 G+ DF+ LF GS L+ AD+ +++++ +C CG++AT R +G ++ +GAQ+ V Sbjct: 121 GLRTDFQGNLFEGSAALMAFADK--LVEMKGICHCGKKATMVLRVDKEGNVIRDGAQIEV 178 Query: 16908 GDVDMAGDPASASADHAPVVGYETLCRRHFMRRVT 17012 G D Y ++CR+HF+ T Sbjct: 179 GAEDK----------------YVSVCRKHFIDGTT 197 >ref|NP_944043.1|thymidine kinase Length = 199 Score = 94.4 bits (233), Expect = 8e-19 Identities = 54/175 (30%), Positives = 99/175 (56%), Gaps = 2/175 (1%) Frame = +3 Query: 16392 VAELVFFSGTMDCGKSTLALQMDHNHRARGRGGVRFSRN-DRAGGARISSRLGLETDCVE 16568 +A+L F +M+ GKST LQ+ N+ R + + + D I SR+G++ +C Sbjct: 1 MAKLFFTHASMNVGKSTQLLQVAFNYNERNQNVLLYKPAFDTRTEGTIGSRIGIQREC-R 59 Query: 16569 VLDTTDFWDEVIERRTRGLRVDYLICDEAQFYSPLQVEQLARIVDEIDVDVFAFGISADF 16748 + + +IE+ ++ + ++ DEAQF + QV +L+ +VD++D+ V +G+ DF Sbjct: 60 CVHVNENMFTMIEKESKLSEIACVLVDEAQFLTEKQVWELSDVVDKLDIPVMCYGLRTDF 119 Query: 16749 RTRLFPGSQRLIELADRVQVLQVEALCWCGRRATHNARTVD-GVMVTEGAQVVVG 16910 LFPGS+ L+ ++D ++ Q+ +C CGR++ AR D G ++ G Q+ +G Sbjct: 120 LGNLFPGSRALLSISDEIR--QLSGICDCGRKSCMVARVDDNGNVIRRGEQICIG 172 >ref|NP_891840.1|topoisomerase medium subunit Length = 454 Score = 89.7 bits (221), Expect = 2e-17 Identities = 110/460 (23%), Positives = 199/460 (43%), Gaps = 28/460 (6%) Frame = -2 Query: 11513 EYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLRPDRGHVKSARVVGEVMGKL----H 11346 EYA R +P DGLKPVQR ++ E L+ +G K R + ++ + + Sbjct: 26 EYAIYSAEERGIPQLVDGLKPVQRFVM----ECALQKSKGDRKKFRKMADIGSGVAELGY 81 Query: 11345 PHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGS-LDDGPAAPRYTEARLAAAALSLTDHL 11169 HG+T +A MA +S PL+DG GNFGS L A RY AR+ + Sbjct: 82 HHGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYIFARVHENFFKIY--- 138 Query: 11168 DEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMATNMAPHNLVEVISAARHLI 10989 +D+ + D + P P +L NG +GIA G T++ PH+L +I Sbjct: 139 -KDMNCAPKHEDLEHIPPAFYLPVVPMVLANGISGIATGYKTDILPHSLESLIECT---- 193 Query: 10988 ANPEATLEDLMRFVPGPDLPT-GGRIVGLDGIRDAYATGRGSFKTRAKVEVEQLSARRTG 10812 E L + P P G+++ D RD G+++ K T Sbjct: 194 ---ELALAGKLDKEPSVQFPKFTGKVIPRDD-RDGVIL-EGTYELNGK----------TK 238 Query: 10811 LVVTELPYMVGPEKVIEKIKDAVNGKKLTGISDIVDLTDR--KHGLRLVIELKNGF---- 10650 L ++E+PY E+ + + DA+ K L IV DR K G R + LK + Sbjct: 239 LTISEVPYKFDREEYV-AVLDALEEKDL-----IVSYNDRCSKDGFRFEVTLKRDYFKSE 292 Query: 10649 NPNAVLQQLYRYSPM-----EDSFGINNVTLVDGQPQTLGL----VQLLSVYVDHRINVV 10497 + +A +Q+ + + ++ +N LV+ + L V++ YVD RI ++ Sbjct: 293 DESARHEQIMKDFKLTQLVAQNIVVVNERGLVEVFEKASDLIRRFVEIRLGYVDKRIELM 352 Query: 10496 RRRTAFRLEKKKDRLHLVEGLLIAIVDI-----DEVIQIIRSSDEVSAARERLMS--IYD 10338 + T + ++ ++ +++ EV+Q I +++ ++L+S +Y Sbjct: 353 QAETLEAYNYAMAKAEFIDRVIKGEIELQGKKKSEVMQSINGHEKLRPYADKLVSMPLYS 412 Query: 10337 LTEIQANYILELRLRQLTKYSRIELEKEQDQLKREIAELE 10218 +T+ + + +++ + ++Y + K+++ EL+ Sbjct: 413 VTQEEYDRLVKDADKHHSEYEYWTKTTAMKEYKKDLKELK 452 >ref|NP_932455.1|thymidine kinase Length = 191 Score = 84.7 bits (208), Expect = 6e-16 Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 1/203 (0%) Frame = +3 Query: 16392 VAELVFFSGTMDCGKSTLALQMDHNHRARGRGGVRFSRN-DRAGGARISSRLGLETDCVE 16568 +A+L F M+ GKST LQ+ +N+ R + D G +SSR+G+ Sbjct: 1 MAKLHFHYAAMNSGKSTHLLQVAYNYMERNMKPLILKPAIDTRDGDNVSSRIGISQKA-H 59 Query: 16569 VLDTTDFWDEVIERRTRGLRVDYLICDEAQFYSPLQVEQLARIVDEIDVDVFAFGISADF 16748 ++ D E+ +D ++ DEAQF + QV QL +VD I+V V +G+ +D Sbjct: 60 MISQDDNLKAFCEKLIELDGIDCILVDEAQFLTVDQVHQLGDVVDYINVPVMCYGLLSDS 119 Query: 16749 RTRLFPGSQRLIELADRVQVLQVEALCWCGRRATHNARTVDGVMVTEGAQVVVGDVDMAG 16928 LFP S L+ LA+R ++ E +CWCG++AT R + G +V +G D Sbjct: 120 NGHLFPASAELLVLAER--KVEHETICWCGKKATMTMRMNEHGEKIWGPRVSIGGNDR-- 175 Query: 16929 DPASASADHAPVVGYETLCRRHF 16997 + ++CRRH+ Sbjct: 176 --------------FISVCRRHW 184 >ref|NP_932596.1|topoisomerase II medium subunit Length = 555 Score = 82.0 bits (201), Expect = 4e-15 Identities = 108/444 (24%), Positives = 183/444 (41%), Gaps = 35/444 (7%) Frame = -2 Query: 11516 LEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLRPDRGHVKSARVVGEVMGKLHPHG 11337 LE+A + RA+P DGLKPVQR +Y E + K A + G V + HG Sbjct: 124 LEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQNRSKFNKVAALAGGVSEAGYHHG 183 Query: 11336 DTAIYDAMVRMAQDFSLRLPLIDGHGNFGS-LDDGPAAPRYTEARLAAAALSLTDHLDED 11160 + + A +A ++ +P+++G GNFGS + AAPRY R+ + + D + Sbjct: 184 EGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAAPRYVFCRVHQNFWDI--YRDIE 241 Query: 11159 VVDFVPNYDNQLTQPDVLPAAF-----PNLLVNGATGIAVGMATNMAPHNLVEVISAARH 10995 + P +P+ LP + P +L NG GIA G ATN+ PH+ +I + Sbjct: 242 LAPVHP-------EPEHLPPRYYLPVIPMVLANGVKGIATGYATNIFPHSYKSLIKCTKA 294 Query: 10994 LI-ANPEATLEDLMRFVPGPDLPTGGRIVGLDGIRDAYATGRGSFKTRAKVEVEQL--SA 10824 I P LE V P+ + R S KT +EVE L + Sbjct: 295 AIEGKPIPRLE-----VQFPEF--------------SGVIRRVSAKT---IEVEGLYELS 332 Query: 10823 RRTGLVVTELPYMVGPEKVIEKIKDAVNGKKLTGISDIVDLTDR-KHGLRLVIELKN--- 10656 +T L +TELP +++ + KL IV ++ K+G R + LK Sbjct: 333 GQTKLTITELPVK------FDRLSYVILLDKLKDQGKIVSYKEQHKNGFRFDVTLKRQDK 386 Query: 10655 -----GFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQPQTLG---LVQLLSVYVDHRINV 10500 NP A +++ + + N+T+++ + + ++ +V+HR Sbjct: 387 FGEQLQNNPEATHEKIIKMFGLRQVL-TQNITVLNPEGKLAEYECAEDVIRDFVEHRRKF 445 Query: 10499 VRRRTAFRLEKKKDRLHLV------------EGLLIAIVDIDEVIQIIRSSDEVSAARER 10356 R + +K + L + + I E+++ I S+ + Sbjct: 446 TAERVEYERQKSEHARDLAWAKFKFINMVIDDKITIKGKQKAELVKEIASNPDFKGFENE 505 Query: 10355 L--MSIYDLTEIQANYILELRLRQ 10290 L MSIY +TE + + + ++Q Sbjct: 506 LVGMSIYRMTEDETYKLQDEAIKQ 529 >ref|NP_803328.1|dUTPase Length = 186 Score = 74.7 bits (182), Expect = 6e-13 Identities = 38/113 (33%), Positives = 64/113 (56%) Frame = +1 Query: 20644 TLSVQLKMLDAGLEAPSYAHPGDAGADLRAREDVVLEPGERRLVPTGVSIALPNGFVALI 20823 T ++Q+K+L P H DAG D+ + E VVLEP E+ ++ T V++++P G+V L+ Sbjct: 8 TNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLL 67 Query: 20824 HPRSGLATKHGLTVVNAPGTVDAGYRGEIAVTLLNTDREKSIELRRGDRIAQM 20982 RSG+++K L + G +DAGY G + + + N + I D A++ Sbjct: 68 TSRSGVSSKTYLVI--ETGKIDAGYHGNLGINIKNDEERDGIPFLYDDIDAEL 118 >ref|NP_958659.1|77ORF021 Length = 180 Score = 74.7 bits (182), Expect = 6e-13 Identities = 38/113 (33%), Positives = 64/113 (56%) Frame = +1 Query: 20644 TLSVQLKMLDAGLEAPSYAHPGDAGADLRAREDVVLEPGERRLVPTGVSIALPNGFVALI 20823 T ++Q+K+L P H DAG D+ + E VVLEP E+ ++ T V++++P G+V L+ Sbjct: 2 TNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLL 61 Query: 20824 HPRSGLATKHGLTVVNAPGTVDAGYRGEIAVTLLNTDREKSIELRRGDRIAQM 20982 RSG+++K L + G +DAGY G + + + N + I D A++ Sbjct: 62 TSRSGVSSKTYLVI--ETGKIDAGYHGNLGINIKNDEERDGIPFLYDDIDAEL 112 >ref|NP_899269.1|deoxyuridine 5'-triphosphate nucleotidohydrolase Length = 165 Score = 73.6 bits (179), Expect = 1e-12 Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 13/131 (9%) Frame = +1 Query: 20668 LDAGLEAPSYAHPGDAGADLRA--REDVVLEPGERRLVPTGVSIALPN----------GF 20811 LDA +E P DAG DLRA E + L+PG+ ++P+GV I + + G Sbjct: 17 LDA-IEPIGVKDPDDAGIDLRAAIEESIELQPGDSVVIPSGVKIHIGSHPLHQQYTDLGV 75 Query: 20812 VALIHPRSGLATKHGLTVVNAPGTVDAGYRGEIAVTLLNTDREKSIELRRGDRIAQMVIQ 20991 I PRSGL KH L + N G +DA Y+GEI + + N + + + + RGDRI Q++ Sbjct: 76 YGAIAPRSGLGFKHFLRLANTIGIIDANYQGEIMIKIRN-EGDDVLHIERGDRICQLIFH 134 Query: 20992 R-VEYAQFVAV 21021 V+ QF V Sbjct: 135 TYVKNVQFEEV 145 >ref|NP_075491.1|phi PVL ORF 53 analogue Length = 175 Score = 72.8 bits (177), Expect = 2e-12 Identities = 35/95 (36%), Positives = 58/95 (61%) Frame = +1 Query: 20644 TLSVQLKMLDAGLEAPSYAHPGDAGADLRAREDVVLEPGERRLVPTGVSIALPNGFVALI 20823 T ++Q+K+L P H DAG D+ + E VVLEP E+ ++ T V++++P G+V L+ Sbjct: 2 TNTLQVKLLSENARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLL 61 Query: 20824 HPRSGLATKHGLTVVNAPGTVDAGYRGEIAVTLLN 20928 RSG+++K L + G +DAGY G + + + N Sbjct: 62 TSRSGVSSKTHLVI--ETGKIDAGYHGNLGINIKN 94 >ref|NP_058491.1|dUTPase Length = 175 Score = 72.8 bits (177), Expect = 2e-12 Identities = 35/95 (36%), Positives = 58/95 (61%) Frame = +1 Query: 20644 TLSVQLKMLDAGLEAPSYAHPGDAGADLRAREDVVLEPGERRLVPTGVSIALPNGFVALI 20823 T ++Q+K+L P H DAG D+ + E VVLEP E+ ++ T V++++P G+V L+ Sbjct: 8 TNTLQVKLLSENARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLL 67 Query: 20824 HPRSGLATKHGLTVVNAPGTVDAGYRGEIAVTLLN 20928 RSG+++K L + G +DAGY G + + + N Sbjct: 68 TSRSGVSSKTHLVI--ETGKIDAGYHGNLGINIKN 100 >ref|NP_803278.1|dUTPase Length = 169 Score = 71.6 bits (174), Expect = 5e-12 Identities = 34/95 (35%), Positives = 58/95 (61%) Frame = +1 Query: 20644 TLSVQLKMLDAGLEAPSYAHPGDAGADLRAREDVVLEPGERRLVPTGVSIALPNGFVALI 20823 T ++Q+++L P H DAG D+ + E VVLEP E+ ++ T V++++P G+V L+ Sbjct: 2 TNTLQVRLLSENARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLL 61 Query: 20824 HPRSGLATKHGLTVVNAPGTVDAGYRGEIAVTLLN 20928 RSG+++K L + G +DAGY G + + + N Sbjct: 62 TSRSGVSSKTHLVI--ETGKIDAGYHGNLGINIKN 94 >ref|NP_943888.1|hypothetical protein Length = 161 Score = 67.0 bits (162), Expect = 1e-10 Identities = 43/113 (38%), Positives = 60/113 (53%), Gaps = 12/113 (10%) Frame = +1 Query: 20683 EAPSYAHPGDAGADLRAR--EDVVLEPGERRLVPTGV----------SIALPNGFVALIH 20826 E P++ AG DLRA E VVL+PGE ++P+G+ S+ L G I Sbjct: 17 ELPAFKSAEAAGIDLRAAIAETVVLKPGEDIVIPSGLKMDIGALQLASVFLDIGVYGCIL 76 Query: 20827 PRSGLATKHGLTVVNAPGTVDAGYRGEIAVTLLNTDREKSIELRRGDRIAQMV 20985 PRSGL KH + + N G +D+ Y GEI + L N + + + GDR+ QMV Sbjct: 77 PRSGLGFKHYVRLANTAGVIDSDYHGEIMIKLRN-EGTGDLTIVPGDRVVQMV 128 >ref|NP_046717.1|putative dUTPase Length = 142 Score = 66.2 bits (160), Expect = 2e-10 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Frame = +1 Query: 20647 LSVQLKMLDAGLEAPSYAHPGDAGADLRAREDVVLEPGERRLVPTGVSIALPNGFVALIH 20826 + +++K LD + GD DLRA EDV ++ E +LVP GV++ LP G+ A + Sbjct: 1 MQIKIKYLDETQTRINKMEQGD-WIDLRAAEDVAIKKDEFKLVPLGVAMELPEGYEAHVV 59 Query: 20827 PRSGLATKHGLTVVNAPGTVDAGYRGEIAVTLLNTDREKSIELRRGDRIAQM-VIQRVEY 21003 PRS G+ N+ G +D Y+G+ + ++++GDRI Q +++++ Sbjct: 60 PRSSTYKNFGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTKIKKGDRICQFRIMKKMPA 119 Query: 21004 AQFVAVAELSDSVR 21045 + V L + R Sbjct: 120 VDLIEVDRLGNGDR 133 >ref|YP_006959.1|putative deoxyUTP pyrophosphatase Length = 148 Score = 63.2 bits (152), Expect = 2e-09 Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 1/125 (0%) Frame = +1 Query: 20674 AGLEAPSYAHPGDAGADLRAREDVVLEPGERRLVPTGVSIALPNGFVALIHPRSGLATKH 20853 AG++ ++ A ADLRA + PG+ ++ TGV++ +P G+ L+ PRS L +H Sbjct: 21 AGMDLRAFFGTNPA-ADLRA-----IAPGKSLMIDTGVAVEIPRGWFGLVVPRSSLGKRH 74 Query: 20854 GLTVVNAPGTVDAGYRGEIAVTLLNTDREKSIELRRGDRIAQMVI-QRVEYAQFVAVAEL 21030 L + N G +D+ YRG I + L N E L +R+ Q+V+ F V EL Sbjct: 75 -LMIANTAGVIDSDYRGTIKMNLYNYGSEMQ-TLENFERLCQLVVLPHYSTHNFKIVDEL 132 Query: 21031 SDSVR 21045 +++R Sbjct: 133 EETIR 137 >ref|NP_542557.1|deaminase protein deoxycytidine triphosphate-like protein Length = 182 Score = 47.0 bits (110), Expect = 1e-04 Identities = 28/84 (33%), Positives = 46/84 (54%) Frame = +1 Query: 20749 LEPGERRLVPTGVSIALPNGFVALIHPRSGLATKHGLTVVNAPGTVDAGYRGEIAVTLLN 20928 L+PG+ L T + +P V ++H RS + + GL + NA G +D G+RG+I + L N Sbjct: 71 LKPGDFALAHTEEMVTIPPDMVGVLHGRSSVG-RLGLFIHNA-GFIDPGFRGQITLELFN 128 Query: 20929 TDREKSIELRRGDRIAQMVIQRVE 21000 I+L+ G R Q+ I ++ Sbjct: 129 ASNH-PIQLKEGMRACQLAIHELK 151 >ref|NP_046572.1|ABC transporter Length = 705 Score = 45.4 bits (106), Expect = 4e-04 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 13/168 (7%) Frame = +1 Query: 6898 VTGASGSGKSTLLAVM--LGFLPPHS-----------GRLAVSGRAAWCPQEAHLFDSTI 7038 + G SG+GKST + L +P S L++ R + + LF TI Sbjct: 514 IIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTI 573 Query: 7039 RGNLMLGRPEXXXXXXXXXXXXXXXXXXXXXXXRRLEHGADTRIGPGGAFLSGGERQRLA 7218 + NL +G L+ ++ G+ LS G++QRLA Sbjct: 574 KENLCMGE-----IFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLA 628 Query: 7219 VARTLMTGADVILLDEPTAHLDAEAGREMLADLRKGLTGRTVVLVTHN 7362 +AR ++ V++LDE +++D + + + L + ++L+THN Sbjct: 629 LARAILHQPQVLILDESLSNIDPDNTKLIYETLHR--MDCLIILITHN 674 >ref|NP_944302.1|conserved phage protein Length = 532 Score = 38.9 bits (89), Expect = 0.039 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 7/72 (9%) Frame = +1 Query: 9313 PAVARPLGGYSANAVTFPA--PGAVPGRAPSVPDTVTTTASSSPGA-TVP----KNSTWS 9471 PA +P+ + A PA P A P AP+ P T TT A SSP +P K + + Sbjct: 83 PATTQPVDMSTPTATPLPAQQPSAAPAAAPATPTTTTTPAPSSPQTPQIPPDAMKGTLMA 142 Query: 9472 PAPSLIPAMPPA 9507 + S+ PA PA Sbjct: 143 DSGSMAPAPTPA 154 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 38.1 bits (87), Expect = 0.066 Identities = 53/181 (29%), Positives = 64/181 (35%), Gaps = 16/181 (8%) Frame = +1 Query: 15307 GFREPVETACSQAGVRGPGRWPGPEPAQAEVGAHPVP-------------PVRDAAGPRL 15447 G REP + G R R PE A V P+P PV+ A L Sbjct: 287 GNREPALRRAAGPGPRAVDREHAPEHGAAPVRGRPLPRGKPDQRVQRADQPVQ-RAERGL 345 Query: 15448 RSGGAGLRFSLHHGVL---ARQFRDGAPGRPARNGGL*RPRSRAGQSGQHAGQLGCGRGP 15618 R GAGL G L Q R G PG G +P +R G GQ + RG Sbjct: 346 RDAGAGLPHQAGCGYLQADCLQDRRGGPG----GAGADQPAARRGVQGQAGRRTVERRG- 400 Query: 15619 PRMAAVSHGVRARGRPHRCDHHQPSAVRRVAHDAGRAAGRPLHRRRHPARTDCRGGGRHA 15798 A + G+RAR P V R G+ + R R P + GGR Sbjct: 401 -LQGADAGGIRARRDDQEPVRRLPRRRAGVCRADRRREGQ-VRRLRGPRQGRVGQGGRAR 458 Query: 15799 C 15801 C Sbjct: 459 C 459 >ref|NP_542287.1|unknown Length = 224 Score = 37.4 bits (85), Expect = 0.11 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 1/117 (0%) Frame = -3 Query: 34927 QSVPSRRSDASAAWTM*RRDPRAPKSLPLAPRMSMPNFVATIASPRRPARALPSMV-SLT 34751 Q RR + AAW+ + +SLP + P +A R P R LP+++ + Sbjct: 83 QRSSKRRLPSIAAWSKHSARSQRARSLPSKSLATAPQHRIPLARTRDPIRLLPALMGACG 142 Query: 34750 PGSLP*VSATSKSVMPASRAA*TTASVPSCDSVTVLARPRLLQPSPTTETVKPEFPR 34580 + P ATS+S M S A TA P+ + R +P + T +P R Sbjct: 143 RRARPRSIATSRSAMRRSSAFSMTAGAPAMSTCL-----RSTMTAPLSNTARPAIAR 194 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 37.4 bits (85), Expect = 0.11 Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Frame = -3 Query: 6502 PPSRRPGQ*APGPVLPPTRTAAR---QLLHPCRRRRWRPAPGPQLRWRAVRPAHPALRQR 6332 P + R + P P L P R + + HPCRR RPA GP+ R V P R Sbjct: 27 PRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRAPSRPAAGPR-RHPPVARTRPRTRAP 85 Query: 6331 HAEPRNGAAARPARTSC 6281 P G A PA C Sbjct: 86 ECAPDPGPAVHPAAPGC 102 Score = 35.4 bits (80), Expect = 0.43 Identities = 72/251 (28%), Positives = 83/251 (33%), Gaps = 19/251 (7%) Frame = +1 Query: 15190 SRSHR*RHLRTVADAPGACLRPALHRRGPHQRGSQPRDR-------GFREPVETACSQAG 15348 +R+H H R V P L PA R H P R G R A ++ Sbjct: 23 TRAHPRAH-RRVRTRPHPHLGPARDRSPDHPEPDHPCRRAPSRPAAGPRRHPPVARTRPR 81 Query: 15349 VRGPGRWPGPEPA--QAEVGAHPVPPVRDAAGPRLRSGGAGLRFSLHH-GVLARQFRDGA 15519 R P P P PA A G P P P LR HH A + R A Sbjct: 82 TRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRPRAPECDRGAHHLRTRAPRTRTRA 141 Query: 15520 ----PG----RPARNGGL*RPRSRAGQSGQHAGQLGCGRGPPRMA-AVSHGVRARGRPHR 15672 PG P + R R R + +LG G R A V VR R RP Sbjct: 142 VPLGPGARVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARP-- 199 Query: 15673 CDHHQPSAVRRVAHDAGRAAGRPLHRRRHPARTDCRGGGRHACRRQLTDVLLRQRPGQSR 15852 P A RR R P H R R R G RH R L R R +S Sbjct: 200 ----GPGAARR-----PRRRPHPEHPR--AVRPRRRTGRRHRRRASLRP---RHRRHRST 245 Query: 15853 APLRVPVGPVG 15885 P+ P+ G Sbjct: 246 PPMNTPLTLAG 256 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 36.6 bits (83), Expect = 0.19 Identities = 34/106 (32%), Positives = 41/106 (38%), Gaps = 4/106 (3%) Frame = -1 Query: 11214 RGPPGGGSAQPHRSPRRRRGGLCPQ--LRQPADPAGCPPRGFPQPAGQXXXXXXXXXXXX 11041 +G PGG + + P+ RG PQ + + PRG P PAG Sbjct: 333 KGDPGGPAGP--QGPKGERGEAGPQGPMGARGERGDTGPRGEPGPAGPRGERGET----- 385 Query: 11040 HGPAQPRG--GHLRCKAPDCEPGGHPRGPHAVRPRTGPAHRRTDRG 10909 GP P G G P EPG P GP R TGP R + G Sbjct: 386 -GPQGPMGARGERGETGPRGEPG--PAGPRGERGETGPQGPRGEPG 428 >ref|NP_944921.1|putative tail fiber protein GP37 Length = 388 Score = 36.6 bits (83), Expect = 0.19 Identities = 39/142 (27%), Positives = 51/142 (35%), Gaps = 13/142 (9%) Frame = -3 Query: 32941 HGQPHFVKGGVHPGGAHFLADAGPHSAGPHAVFD----------ADDQPVAGSQRNNGFP 32792 H ++ GG H GA D + FD A V+GS G Sbjct: 219 HSHSIYLTGGGHTHGAAITIDGFDYGNKSTNSFDYGTKTTNSTGAHTHSVSGSTNTTG-- 276 Query: 32791 DRQQPAGVHYGGADALGSKAVGNVQGEFGHGADAHDQHVVFAGAGRAAGQHIHAVAEALQ 32612 + G YGG D++G K V G + A D +G+ G H H VA Sbjct: 277 NHTHTVGGRYGG-DSIGGKHRVQVSGTEQVSSVAGDHSHTISGSTNTTGNHQHTVA---- 331 Query: 32611 GFHFGAH---VALGIPDYGGRV 32555 GAH VA+G + G V Sbjct: 332 ---IGAHTHTVAIGAHTHKGTV 350 >ref|NP_945069.1|gp38 Length = 323 Score = 35.4 bits (80), Expect = 0.43 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 10/95 (10%) Frame = +1 Query: 33172 RKWDGGAHWVVPGNYLGEDVHGWWIFQPKGSFISRPGAAFHARSDAVLLVPRTGDYVATF 33351 R DGG HWV+ G GE HG P + R A +D L + G++ + Sbjct: 207 RPADGGLHWVIAG---GESGHGARPMHPDWARSLRDQC---AAADVPFLFKQWGEHSLAY 260 Query: 33352 YDDTYPGDFR----------VYVDLAVGHGWNGIR 33426 D D+R +++LA GHG NG R Sbjct: 261 DRDRDDPDYRRCDRMARLPGRWINLAGGHGLNGER 295 >ref|NP_777335.1|coat protein Length = 217 Score = 35.4 bits (80), Expect = 0.43 Identities = 23/71 (32%), Positives = 29/71 (40%) Frame = -1 Query: 38628 GLIRGSSAPPWK*RGPLSPAAPRDAAGRCRLPVKRPAFPPDSQPANSLPSVDFPLPDPPN 38449 GLI P + R P +PA +P PP SQP S P PP Sbjct: 19 GLIAWRMTDPNRQRVPYAPA--------------QPVVPPSSQPVLPPSSQPISTPTPPQ 64 Query: 38448 TAVSVPGPAAT 38416 T+ ++P P AT Sbjct: 65 TSPTLPNPIAT 75 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 192,796,049 Number of Sequences: 14420 Number of extensions: 4244213 Number of successful extensions: 16714 Number of sequences better than 0.5: 31 Number of HSP's better than 0.5 without gapping: 6488 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 16620 length of database: 3,019,461 effective HSP length: 115 effective length of database: 1,361,161 effective search space used: 17833931422 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig19 (48,931 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_024510.1|putative ribonucleotide reductase large subunit 465 e-130 ref|NP_046713.1|ribunucleotide reductase large subunit 398 e-110 ref|NP_046714.1|unknown 261 3e-69 ref|YP_024511.1|putative ribonucleotide reductase minor subunit 205 3e-52 ref|NP_818250.1|gp199 192 3e-48 ref|NP_891805.1|aerobic NDP reductase large subunit 147 1e-34 ref|NP_944991.1|putative ribonucleoside triphosphate reductase a... 144 8e-34 ref|NP_861929.1|NrdA aerobic NDP reductase, large subunit 139 3e-32 ref|NP_049845.1|NrdA aerobic NDP reductase, large subunit 139 3e-32 ref|NP_046670.1|similar to Escherichia coli YedG 137 1e-31 ref|YP_195185.1|ribonucleotide reductase A subunit 137 1e-31 ref|NP_818618.1|gp80 135 5e-31 ref|NP_803872.1|ORF306 125 4e-28 ref|NP_899523.1|aerobic ribonucleoside diphosphate reductase lar... 124 7e-28 ref|YP_006924.1|putative aerobic ribonucleoside diphosphate redu... 107 8e-23 ref|NP_046685.1|putative DNA polymerase 100 1e-20 ref|NP_542569.1|ribonucleotide reductase 100 1e-20 ref|YP_164331.1|hypothetical protein 90 2e-17 ref|NP_046712.1|similar to Bacillus subtilis NrdI (YmaA) 67 1e-10 ref|YP_195186.1|ribonucleotide reductase B subunit 65 6e-10 ref|NP_943925.1|NrdA-B aerobic NDP reductase large subunit 64 1e-09 ref|YP_006922.1|putative aerobic ribonucleoside diphosphate redu... 62 7e-09 ref|NP_943924.1|NrdB aerobic NDP reductase small subunit 60 2e-08 ref|NP_932466.1|hypothetical protein 59 3e-08 ref|NP_891801.1|aerobic NDP reductase small subunit 57 1e-07 ref|NP_899524.1|aerobic ribonucleoside diphosphate reductase sma... 57 2e-07 ref|NP_046572.1|ABC transporter 56 3e-07 ref|YP_024509.1|putative NrdI protein 56 4e-07 ref|NP_817487.1|gp37 53 2e-06 ref|NP_569800.1|glutaredoxin gp67 51 1e-05 ref|NP_049841.1|NrdB aerobic NDP reductase, small subunit 50 2e-05 ref|NP_818357.1|gp56 45 7e-04 ref|NP_046872.1|gp56 44 0.001 ref|NP_861928.1|NrdB aerobic NDP reductase, small subunit 44 0.001 ref|NP_039720.1|predicted 11.4Kd protein 42 0.004 ref|YP_164321.1|hypothetical protein 40 0.021 ref|NP_932465.1|hypothetical protein 40 0.021 ref|NP_700395.1|putative tail protein 38 0.11 ref|NP_958267.1|hypothetical protein 37 0.18 ref|NP_945089.1|gp58 37 0.18 >ref|YP_024510.1|putative ribonucleotide reductase large subunit Length = 704 Score = 465 bits (1197), Expect = e-130 Identities = 256/699 (36%), Positives = 399/699 (57%), Gaps = 9/699 (1%) Frame = +3 Query: 9291 ELNAMLNLYGPNGEIQFEADREAAHQYFLQHVNNNTVFFHDLEEKLDYLVKNQYYERETL 9470 ELN + NG+ + D+EA +Y L+++ +NT F+ E++ L K Y++ Sbjct: 9 ELNNEITQLDDNGKNKLYKDQEALDEY-LKYIEDNTRKFNSEVERIRVLTKEGTYDK-IF 66 Query: 9471 DQYTMNFIRELFNRAYKKKFRFETFLGAFKFYTSYTLKTFDGKR---FLERYEDRVCMVA 9641 D I E+ AY F+F +F+ KFY SY K +D + F+E YE VA Sbjct: 67 DNVPDTIIDEMTKLAYSFNFKFPSFMAGQKFYESYASKQYDENKKPIFVEDYEQHNVRVA 126 Query: 9642 LHLARGDEQLALQMVDEIIEGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSI 9821 L+L + D A +++ +++E FQP+TPT+ N+G+ RGEL SC+L ++D++ES+ Sbjct: 127 LYLFQNDYVKARELLVQLMEQTFQPSTPTYNNSGQANRGELSSCYLFVVDDSIESLNFVE 186 Query: 9822 NSALQLSKRGGGVAFALTNIREVGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGA 10001 +S S GGGVA LT IR GAP++ N S GVI K +E S +Q G RQG+ Sbjct: 187 DSVANASSNGGGVAIDLTRIRPKGAPVRNRPNSSKGVIAFAKAIEHKVSIYDQGGVRQGS 246 Query: 10002 GAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRDEDMYLFSPYDV 10181 GAVYL+ H DI L +K+ NA E +R+ LS+GV IP+ EL K + Y F YD+ Sbjct: 247 GAVYLNIFHNDILDLLSSKKINASESVRLDKLSIGVTIPNKFMELVKEGKPFYTFDTYDI 306 Query: 10182 ERVYGMPFSDVSVTEKYYEMVDDSRIKKTKIKAREFFQTLAEIQFESGYPYIMFEDTVNR 10361 ++YG ++++ E Y +++++ I K K ARE +A+ Q ESGYPY+ + D N Sbjct: 307 NKMYGKYLDELNIDEWYDKLLNNDSIGKVKHDAREVMTDIAKTQLESGYPYVFYIDNAND 366 Query: 10362 ENPID--GKIIMSNLCSEILQVSQPTTYHDDLSYDQT--GKDISCNLGSLNIAKTMDSPD 10529 +P+ GK+ MSNLC+EI Q+ + + + +Q +D+ C LGSLN+ ++ Sbjct: 367 NHPLKNLGKVKMSNLCTEISQLQEVSEIYPYSYSNQNVINRDVVCTLGSLNLVNVVEKGL 426 Query: 10530 FGLTIETAIRSLSAVSDMSNITSVPSIARGNDQSHAIGLGQMNLHGYLARERVHYGSEEG 10709 +++ R+L+ V+D+ ++ +PS+ + ND AIGLG MNLHG LA+ + YGS E Sbjct: 427 LNESVDIGTRALTKVTDIMDLPYLPSVQKANDDIRAIGLGSMNLHGLLAKNMISYGSREA 486 Query: 10710 LDFTNIYFYSVVYHAVRASNKLAIQTGQTFGGFEKSKYASGEFFDKYTDQEWVPQTEKVA 10889 LD N + ++ + +++ S +A +TG+ F GFEKS YA+GE+F +Y + P+T+K Sbjct: 487 LDLVNSLYSAINFQSIKTSMLMAKETGKPFKGFEKSDYATGEYFVRYIRESNQPKTDKAK 546 Query: 10890 ELFKNIHIPTQDDWRELKASVMEHGIYNQNLQAVPPTGXXXXXXXXXXXXHPVASKIEIR 11069 ++ ++IPTQDDW EL +V HG+YN +A PT PV S IE R Sbjct: 547 KVLDKVYIPTQDDWDELAKAVKVHGLYNGYRKAEAPTQSISYVQNATSSIMPVPSAIENR 606 Query: 11070 KEGKLGRVYYPAPYLTNDNLEYY--QDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDT 11243 + G + YYP PYL+ +Y + AY+I +++I+T A +H DQ +S L+ + Sbjct: 607 QYGDM-ETYYPMPYLSPITQFFYEGETAYKIDNKRIINTSAVVQKHTDQAVSTILYVESE 665 Query: 11244 ATTRDINKAQIYAWKKGIKTIYYIRLRQLALEGTEVEGC 11360 T + YAW++G+K++YY R R+L++ E E C Sbjct: 666 IPTNKLVSLYYYAWEQGLKSLYYTRSRKLSV--IECETC 702 >ref|NP_046713.1|ribunucleotide reductase large subunit Length = 1084 Score = 398 bits (1023), Expect = e-110 Identities = 191/362 (52%), Positives = 262/362 (72%), Gaps = 2/362 (0%) Frame = +3 Query: 9324 NGEIQFEADREAAHQYFLQHVNNNTVFFHDLEEKLDYLVKNQYYERETLDQYTMNFIREL 9503 +G+ QFE D+EA H YF+ ++N NTVFFHDL+EKLDYL+KN YYE E L +YT I+ + Sbjct: 20 DGKYQFEKDKEAVHSYFVDYINQNTVFFHDLKEKLDYLIKNDYYEEEFLSKYTFEQIKSI 79 Query: 9504 FNRAYKKKFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLARGDEQLALQM 9683 + AY KFRF +F+ AFKFY Y LKT D + LERYEDRV +VAL+ A GD + A++ Sbjct: 80 YKIAYSYKFRFPSFMSAFKFYNDYALKTNDKTKILERYEDRVSIVALYCADGDYEKAVEE 139 Query: 9684 VDEIIEGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVA 9863 V +++ +QPATPTFLNAG+K+RGE+VSCFLL + D++ I R+I+ ++QLSK GGGVA Sbjct: 140 VHTMMKQEYQPATPTFLNAGRKRRGEMVSCFLLEVGDSLNDISRAIDISMQLSKLGGGVA 199 Query: 9864 FALTNIREVGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYR 10043 L +R G IK +EN + GV+ VMKLL+++F YA+Q+G RQG+GAVYL HPDI Sbjct: 200 LNLNKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAVYLSVFHPDITD 259 Query: 10044 FLDTKRENADEKIRIKTLSLGVVIPDITFELAKRDEDMYLFSPYDVERVYGMPFSDVSVT 10223 FLDTK+ +ADE +R+KTLS+GVV+PD ELA+ D+D Y+F P+ V + YG ++ + Sbjct: 260 FLDTKKISADEDVRVKTLSIGVVVPDKFIELAREDKDYYMFYPHSVYKEYGQYLDELDIN 319 Query: 10224 EKYYEMVDDSRIKKTKIKAREFFQTLAEIQFESGYPYIMFEDTVNRENPID--GKIIMSN 10397 E Y E+V++ R++K K AR+ + LA ++ ESGYPYIMF D VN+ +P + K+ SN Sbjct: 320 EMYDELVENPRVRKAKGNARKLLEQLAILRSESGYPYIMFADNVNKVHPNEHISKVKFSN 379 Query: 10398 LC 10403 LC Sbjct: 380 LC 381 Score = 287 bits (735), Expect = 6e-77 Identities = 145/330 (43%), Positives = 206/330 (62%) Frame = +3 Query: 10386 IMSNLCSEILQVSQPTTYHDDLSYDQTGKDISCNLGSLNIAKTMDSPDFGLTIETAIRSL 10565 I++ CSE+LQ SQ + Y D D+ G DISCNLGS+NI M + T+ AI SL Sbjct: 761 IVTGNCSEVLQSSQVSVYTDYDKEDEIGLDISCNLGSMNIVNVMSNQSIASTVRIAIDSL 820 Query: 10566 SAVSDMSNITSVPSIARGNDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYFYSVV 10745 + V+ +NI + P++AR N +IGLGQMNLHG+LA+ + Y SEE DF N YF V Sbjct: 821 TTVTRKTNIVNAPAVARANTLMRSIGLGQMNLHGFLAQNNIAYESEEAKDFANTYFMMVN 880 Query: 10746 YHAVRASNKLAIQTGQTFGGFEKSKYASGEFFDKYTDQEWVPQTEKVAELFKNIHIPTQD 10925 +++++ S ++A +TG+T+ F+ S Y SGE+F+KY ++ PQ EKV +LF + HIP Sbjct: 881 FYSLQRSMEIARETGETYYKFDGSTYKSGEYFEKYVTNDYSPQYEKVKKLFGDQHIPNIQ 940 Query: 10926 DWRELKASVMEHGIYNQNLQAVPPTGXXXXXXXXXXXXHPVASKIEIRKEGKLGRVYYPA 11105 DW +LK VM++G+Y+ QA+ PTG P+ +IE R G + YYP Sbjct: 941 DWMKLKEDVMKYGLYHSYRQAIAPTGSISYVQSSTAGVMPIMERIEERTYGN-SKTYYPM 999 Query: 11106 PYLTNDNLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAW 11285 P L+ N +Y++AY++ KV+D A QHVDQG+S TLF KDT TTRD+N+ +YA Sbjct: 1000 PGLSAQNWFFYKEAYDMDMFKVVDLIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAH 1059 Query: 11286 KKGIKTIYYIRLRQLALEGTEVEGCVSCML 11375 +GIKT+YY R + T EGC+SC++ Sbjct: 1060 HRGIKTLYYARTKD-----TTQEGCLSCVV 1084 >ref|NP_046714.1|unknown Length = 329 Score = 261 bits (668), Expect = 3e-69 Identities = 141/306 (46%), Positives = 202/306 (66%), Gaps = 8/306 (2%) Frame = +2 Query: 11519 EAINWNRIQDDKDVDVWNRLVNNFWLPEKVPLSNDVQSWATLTPDEQQLTMRVFTGLTLL 11698 +A NW++ +DD +N+ V FWLPE++ L+ D+ +W L +EQ M+V GLTLL Sbjct: 6 DAANWSKHEDDFTQMFYNQNVKQFWLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLL 65 Query: 11699 DTIQGTVGAVSLIPDAITPHE-EAVYTNIAFMES-VHAKSYSSIFSTLASTKEIDEAFRW 11872 DT QG G + ++ + + H+ +AV +A ME+ VHAKSYS+IF TLA T++I+E F W Sbjct: 66 DTEQGNTG-MPIVAEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEW 124 Query: 11873 STENANLQKKAQIVMDYYQG---DDPL---KRKVASTLLESFLFYSGFYLPMYWSSRAKL 12034 N LQKKA+ ++ Y+ +D + K VAS LESFLFYSGFY P+Y+ + KL Sbjct: 125 VKNNRFLQKKARTIVSVYKTIKKNDEISLFKGMVASVFLESFLFYSGFYYPLYFYGQGKL 184 Query: 12035 TNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVSEEKRQEIKDYTFELLFELYENEVQYTH 12214 + ++I LIIRDEA+HG Y+G Q+ +K + +K++E+ + LL ELYENE++YT Sbjct: 185 MQSGEIINLIIRDEAIHGVYVGLLAQEIYKKQTPQKQKELYAWALNLLQELYENELEYTE 244 Query: 12215 DLYDSVGLAEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAILSALSPNADENHDFFS 12394 D+YD VGLA DVKKF+ YNANKAL NLG++ F DVNP +++ L+ ++HDFFS Sbjct: 245 DVYDQVGLAPDVKKFIRYNANKALNNLGFDHWFEEE--DVNPIVINGLNTKT-KSHDFFS 301 Query: 12395 GSGSSY 12412 G+ Y Sbjct: 302 TKGNGY 307 >ref|YP_024511.1|putative ribonucleotide reductase minor subunit Length = 349 Score = 205 bits (522), Expect = 3e-52 Identities = 128/318 (40%), Positives = 177/318 (55%), Gaps = 13/318 (4%) Frame = +2 Query: 11483 DMTEKVKLLSH---VEAINWNRIQDDKDVDV-WNRLVNNFWLPEKVPLSNDVQSWATLTP 11650 D+T+KVK + ++A NWN I+DD D+ W + ++ FW PE+ +S D+ SW +LT Sbjct: 2 DITQKVKQHNKNAVLKATNWN-IEDDGMSDIYWEQGISQFWTPEEFDVSRDLSSWNSLTE 60 Query: 11651 DEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFS 11830 E+ +V GLT LDT QG G + P +AV+ + ME +HAKSYS IF+ Sbjct: 61 SEKNTYKKVLAGLTGLDTKQGGEGMNLVSYHEPRPKYQAVFAFMGGMEEIHAKSYSHIFT 120 Query: 11831 TLASTKEIDEAF-RWSTENANLQKKAQIVMDYYQG--------DDPLKRKVASTLLESFL 11983 TL S KE W EN L+ KAQ + YY D KVAS LES L Sbjct: 121 TLLSNKETSYLLDTWVEENDFLKVKAQFIGYYYDQLLKPNPTIFDRYMAKVASAFLESAL 180 Query: 11984 FYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVSEEKRQEIKDY 12163 FYSGFY P+ + R ++T + +I I +DEA HG +G Q ++EE++++ Sbjct: 181 FYSGFYYPLLLAGRGQMTQSGAIIYKITQDEAYHGSAVGLTAQYDYNLLTEEEKKQADKE 240 Query: 12164 TFELLFELYENEVQYTHDLYDSVGLAEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPA 12343 T+ELL LY NEV YTH LYD + L+EDV ++ YN N+AL NLG E F + NP Sbjct: 241 TYELLDILYTNEVAYTHSLYDPLELSEDVINYVQYNFNRALQNLGREDYF--NPEPYNPI 298 Query: 12344 ILSALSPNADENHDFFSG 12397 + + + + N DFFSG Sbjct: 299 VENQTNVDRLRNVDFFSG 316 >ref|NP_818250.1|gp199 Length = 1131 Score = 192 bits (488), Expect = 3e-48 Identities = 255/1142 (22%), Positives = 460/1142 (40%), Gaps = 63/1142 (5%) Frame = +2 Query: 41009 GVSWPDELXXXXXXXXXXXXXCTDRDGLYGTVKHLKACMSAGLDPVVGVDLAVFDDDGDL 41188 G S P+E+ TD D + G + KAC +AG+ PV+G + + D Sbjct: 19 GRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGAEQRWMLNIADS 78 Query: 41189 RTQLAG-----RVVVLAHGHNDGAGYRALCRLISDAHARTSG-KAGGVVPVAVTRAEIAS 41350 R + G +V+LA + G R L L S A+ K + P + + Sbjct: 79 RERKTGASDSSHIVLLAENNT---GLRNLWALSSLAYEPEQFYKKPQLDPGLLMQYRDGL 135 Query: 41351 RALHPETLEPVLTVLVGPDSDVGRAMGGRRYLRPRTLFKQWLDGMPKGTVAAEVVSHLSA 41530 A L +V D+ R G L + D + ++ +S Sbjct: 136 WASDGCMLTRFADYVVNDQEDLARQEWG-------VLLHIFGDHFYSELHTWQFINPVSP 188 Query: 41531 PGEALSTAHA---VRMLKLAAEHGVPAVLTNAVRYCAEDGAATADVLDSARTLKSLPELT 41701 +AL+ + + ++LA E GVP V+ N Y E + T + Sbjct: 189 EQQALNARMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSWKKDQH 248 Query: 41702 AEPLLQPNGRGWLKTSAQMLELGQEIIHAAGYGATDLTRLLGQTEALADRCRMDPVTDMG 41881 E + + W+ + ++ + + G G + + + + +AD+C ++ Sbjct: 249 EE---RGHAADWMMNADEI----RHYMGLHGVGTSVIEEAMRNSGWIADQCN----AEID 297 Query: 41882 WKRPVVPEASVIGIAGDPLVELTLRCEAGIGRRFPGISGKPEAEMRARLEHELRIIANLG 42061 K +P + E G +RF G PE R RLE+E ++I + Sbjct: 298 GKLLAMPRLHATD--AEDAAAFRRAIEEGF-KRFVVDKGLPEDVYRQRLEYEAKLIIDKN 354 Query: 42062 FASYFLTVAEVSRMILDMG--------------VXXXXXXXXXXXLVNYLIDVSQVNPLQ 42199 A YF VA+ + + LV Y++ ++ ++P++ Sbjct: 355 MAGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIK 414 Query: 42200 HDLIFERFLSRDRATLPDIDIDVESAERHNVYRRIFDRFGAERVTLMSMQNGYRARGAVR 42379 +DL+FERF++ DR PDID+D + +++ V + + R+G V + + R R ++ Sbjct: 415 YDLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQ 474 Query: 42380 XXXXXXXXXXXXXXEIAKQLWRFSARNFREALVEKPE----------LKEFAGRVEQRDF 42529 ++ + + E +E PE L+E G E + Sbjct: 475 DLCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGG--ELAPY 532 Query: 42530 AENQQLDLLVDLTERLDRLPRHISMHPCGVILG-DATLLDRTPVQ-PSGLGLPMSQFDKH 42703 A+ + L +L E++ + R + +HP GV++ D P + G + +QFD + Sbjct: 533 AK--KYPDLFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMY 590 Query: 42704 DMDPMGMLKLDVLGVRMQSAMAFAVREVIRLHPTKAEVVAAGAHRPGPDGTGPDYIAADG 42883 +++ +G +K D+L + + A + H + G P A+ Sbjct: 591 ELEELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPE---------GAEK 641 Query: 42884 RIDLNAVP-LDDEPTYELIRSTHTLGCFQIESPGQRELIGKMAPREFNDLIIDISLFRPG 43060 I LN L+D Y+ I T G FQ+ +P +L + PR D+ S+ RPG Sbjct: 642 VITLNEERYLNDPAIYDQIDRGQTAGLFQVNTPAGTKLAMRFRPRSVVDMADLASINRPG 701 Query: 43061 PMK-SDMVRPFLEHRHGFAPEVYPHPDLKPVL-----QETHGVTVFHEQILKTFDVMTKC 43222 + ++ ++E RHG Y HP ++ + T+G+ V+ EQ+++T + Sbjct: 702 VTRVPGLLDKYIERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGF 761 Query: 43223 GLARADEFRRALGNEL------LEPKVEE--FFRKEARARGYTPEVVDKVWGTLKAFGSF 43378 A+ R+ +G + LEPK + E +G T +V D++W +LKA G++ Sbjct: 762 TPGEAERLRKGIGKKKMEIINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGAY 821 Query: 43379 GFCKAHGAAFAVPTYQSAWLKAHHPEAFLAG-LWEHDPGMYPKRLLVAEARRLGIPILPL 43555 F K+HG +A+ Q AW+K ++ + F+ G L H + E R+ +LP Sbjct: 822 AFNKSHGVGYALQPCQEAWVKHYYFDEFITGCLVIHTDKTI---RFLRECRQRKRAVLPP 878 Query: 43556 DINRSHAEYRVERVGSGPDRGKLGIRLSLNGIYGLSGAELKRIVAGQPYDSLADLRARSR 43735 D+N+S G+G GIR L I G+ A + I+A +P+ L D AR+ Sbjct: 879 DVNQS---------GAGFTLTDEGIRFGLTDISGIGDAAMPDILANRPFKDLDDFLARAS 929 Query: 43736 LS----KPSIKRLAQLGAFDTL--HRESGGAANRADLVQHLQALQNRPSKKGVDVIEGQL 43897 S K + L ++GAFD HR+ + +H + L + P K ++ Q+ Sbjct: 930 KSGGAKKGVVDALIKVGAFDFTGEHRQ----VMLEKVYRHRRGL-SAPVKWAKMSLDEQV 984 Query: 43898 SLPLGDVELRNLKAE------LPAPSMIDNVRAELDLMAVDVSEHLMTSHRPLLDKLGVT 44059 + R +K E P I ++ E++++ VS M + ++D + Sbjct: 985 A---EIAAKRRVKPEDYPVYNFEDPQFIHDL--EVEMLGTFVSYDPMAKYARMIDGECIR 1039 Query: 44060 TADKLLGLRNGTEVLVAGVRIATQTPPMRGGRRVVFISIDDGTGCVDSVFFHEAQELAGP 44239 G V G + +T + G+++ F+++ + + F +A P Sbjct: 1040 HPMDYDDFEPGDRFCVGGKLVKARTHRQKNGKQMAFLAVHWNEEDFEILAFADAWARCQP 1099 Query: 44240 LL 44245 LL Sbjct: 1100 LL 1101 >ref|NP_891805.1|aerobic NDP reductase large subunit Length = 747 Score = 147 bits (370), Expect = 1e-34 Identities = 160/662 (24%), Positives = 288/662 (43%), Gaps = 21/662 (3%) Frame = +3 Query: 9453 YERETLDQYTMNFIRELFNRAYKKKFRFE-TFLGAFKFYTSYTLKTFDGKRFLERYEDRV 9629 Y+RE L +Y+ + E + K F+ T+ GA + Y ++ K+ +E + Sbjct: 112 YDREILQKYSREEV-EYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFAY 170 Query: 9630 CMVALHLARGDEQLALQMVDEIIEG--RFQPATPTFLNAG-KKQRGELVSCFLLRIEDNM 9800 ++ + L + + + L+ V + Q + PT + AG + + SC ++ +D++ Sbjct: 171 MLIGMCLHQEETENRLEHVIDFYNAVANKQISLPTPIMAGVRTPTRQFSSCVVIESDDSL 230 Query: 9801 ESIGRSINSALQLSKRGGGVAFALTNIREVGAPIKQIENQSSGVIPVMKLLEDSFSYANQ 9980 + I + N+ ++ + G+ IR G+ I E + +GVIP K + + +Q Sbjct: 231 QGINETANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPFWKHFQTAVKSCSQ 290 Query: 9981 LGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRDEDMY 10160 G R GA +Y H + + K E RI+ L GV I ++ E + + + Sbjct: 291 GGIRGGAATLYYPMWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINNLMVERFLKRDYIT 350 Query: 10161 LFSPYDVER--VYGMPFSDVSVTEKYYEMVD-DSRIKKTKIKAREFFQTLAEIQFESGYP 10331 LFSP DV ++ + F D + YE ++ D ++KT++KA + F +A +F +G Sbjct: 351 LFSP-DVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTRVKAEDLFLAVAIERFNTGRI 409 Query: 10332 YIMFEDTVNRENPI---DGKIIMSNLCSEILQVSQPTTYHD-DLSYDQTGKDISCNLGSL 10499 Y F D +N I SNLC EI ++P D ++S + LG+ Sbjct: 410 YPTFTDNMNNHGAFIRNVAPIKQSNLCCEIALPTKPMGRDDSEISLCTLAAYV---LGNF 466 Query: 10500 NIAKTMDSPDFGLTIETAIRSLSAVSDMSNITSVPSIARGNDQSHAIGLGQMNLHGYLAR 10679 +I + + + A+ +L D ++ + R ++G+G N YLA Sbjct: 467 DIENMEEVERIAMVMVRALDNLLDYQDYPVEQALTAKKR-----RSLGVGVTNFASYLAD 521 Query: 10680 ERVHYGSEEGLDFTNIYFYSVVYHAVRASNKLAIQTGQTFGGFEKSKYASGEFFDKYTDQ 10859 Y E+ +FT+ F + Y ++AS +LA + G +++Y GE Sbjct: 522 NFFTY--EDANEFTHKTFERLQYALIKASVQLAKEKG-ACELMHETRYGRGEL-----PI 573 Query: 10860 EWVPQTEKVAELFKNIHIPTQDDWRELKASVMEHGIYNQNLQAVPPTGXXXXXXXXXXXX 11039 +W +T V EL ++ + DW EL+ + ++GI N L A+ P Sbjct: 574 DWYKKT--VDELVDPVY---EMDWEELRKDLKKYGIRNSTLSALMPCESSSQVSNSTNGI 628 Query: 11040 HPVASKIEIR--KEGKLGRVYYPAPYLTNDNLEYYQDAYEIGYEKVIDTYAAATQHVDQG 11213 P + ++ KEG+ +V P D ++ + G + + A + VDQ Sbjct: 629 EPPRGIVSVKGSKEGQFNQV-IPNVENNADVIDLLWTLIKKGNKPYLTLAAIMQKFVDQA 687 Query: 11214 LSLTLFFKDTATTR-------DINKAQIYAWKKGIKTIYYIRLRQLALEGTE-VEGCVSC 11369 +S + D +T + D+ ++A G+KT+YY +R A +GTE C SC Sbjct: 688 ISSNTSY-DPSTYKTGKVDIADVLDDMLFAQYYGLKTLYYANVRDGA-DGTEDASECSSC 745 Query: 11370 ML 11375 L Sbjct: 746 KL 747 >ref|NP_944991.1|putative ribonucleoside triphosphate reductase alpha chain Length = 744 Score = 144 bits (363), Expect = 8e-34 Identities = 146/565 (25%), Positives = 243/565 (43%), Gaps = 17/565 (3%) Frame = +3 Query: 9717 ATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIREVGA 9896 A +LN + + SC L++ D ES+G + A ++ + G+ L R +G Sbjct: 198 APTPYLNGLRATKSGYASCCLIKANDTAESLGIAAKVAYDMTTKQAGIGM-LMETRTIGD 256 Query: 9897 PIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADE 10076 I+Q + G +P KL+ S AN+ +R G+ + A P I L K Sbjct: 257 GIRQNTIEHMGKLPYYKLVRSSVE-ANKQKSRGGSANNFYTALDPQIEDLLRLKHPTTVP 315 Query: 10077 KIRIKTLSLGVVIPDITFELAKRDEDMYLFSPYDVERVYGMPFSDVSVTEKYYEM--VDD 10250 RI + D ++ + D D LFS D ++Y M F S E + Sbjct: 316 SKRINEMDYSFGTNDYFWQCVQYDTDWLLFSYKDAPKLYDM-FYTASADEFAMAVGHAVH 374 Query: 10251 SRIKKTKIKAREFFQTLAEIQFESGYPYIMFEDTVNRENPIDGKIIMSNLCSEIL----Q 10418 S +K ++KARE + + ++ +G Y F + N P + MSNLC EI+ Sbjct: 375 SGVKHRRVKAREIAKLFIQQRYATGRVYPFFTNNANTHTPFKEPLKMSNLCMEIVLPVYG 434 Query: 10419 VSQPTTYHDDLSYDQTGKDISCNLGSLNIAKTMDSPDFGLTIETAIRSLSAVSDMSNITS 10598 + T + D + + G+ C L SL +A + ++ A+ + +V D+ + Sbjct: 435 FEKETDLYRDDAVKEDGEVALCFLASL-VAGRISEDEYADVAYYALAMVDSVIDLMDY-P 492 Query: 10599 VPSIARGNDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYFYSVVYHAVRASNKLA 10778 PS+ + ++G+G N+ YLA+ V+Y S G + Y+ AS +LA Sbjct: 493 YPSMRNHVQKRRSVGIGLTNVAHYLAKNYVNYSSRAGKTKLHELAEMHSYYLHEASLRLA 552 Query: 10779 IQTGQTFGGFEKSKYASGEFFDKYTDQEWVPQTEKVAELFKNIHIPTQDDWRELKASVME 10958 + G E K F KY + WVP ++ + + DW +L + E Sbjct: 553 KERGVP----EYMK------FTKY-PEGWVPPKTANKKIDEKHDAKLRYDWDDLAQRIKE 601 Query: 10959 H-GIYNQNLQAVPPTGXXXXXXXXXXXXHPVASKIEIRKEGKLGRVYYPAPYLTNDNLEY 11135 + GI N L+A P +P+ I + K+ G V + P + L+Y Sbjct: 602 NGGIRNSVLEAYMPNESSSLATNTTNGLYPIRDFI-LTKKSATGNVLFIVP--DYEELKY 658 Query: 11136 -YQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQ-----IYAWKKGI 11297 Y+ A++I +ID YA + Q +S + F+ D A ++ ++ AQ IYA G+ Sbjct: 659 VYEIAWDIDTFDMIDCYAIVQKFTGQAIS-SDFYVDYAKSKKVSLAQALKYMIYANSVGM 717 Query: 11298 KTIYYIRLR----QLALEGTEVEGC 11360 KT+YY+ R + AL+ EGC Sbjct: 718 KTMYYLNSRIGVGKSALQDAYCEGC 742 >ref|NP_861929.1|NrdA aerobic NDP reductase, large subunit Length = 751 Score = 139 bits (350), Expect = 3e-32 Identities = 159/684 (23%), Positives = 273/684 (39%), Gaps = 32/684 (4%) Frame = +3 Query: 9420 EKLDYLVKNQYYERETLDQYTMNFIRELFNRAYKKKFRFETFLGAFKFYTSYTLKTFDGK 9599 + + Y V Y+ E L +Y+ I L +R ++ T+ GA + Y +K Sbjct: 99 DHISYCVNEGKYDPELLSRYSAEEIIYLDSRIKHERDFDLTYAGAMQLKEKYLVKDKTTG 158 Query: 9600 RFLERYEDRVCMVALHLARGDEQLALQMVDEIIEG--RFQPATPTFLNAGKKQ-RGELVS 9770 + E + + + + L + + L+ + + Q + PT + AG + + S Sbjct: 159 KIYETPQFAIMAIGMALHQDETHDRLKHIIRFYDAVSTHQVSLPTPIMAGARTPTRQFSS 218 Query: 9771 CFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIREVGAPIKQIENQSSGVIPVMKL 9950 C ++ D+++SI ++ S ++ + G+ + +R G+ I E + +GVIP K Sbjct: 219 CVVIEAGDSLKSINKTSASIIEYISKRAGIGINVGMLRAEGSKIGMGEVRHTGVIPFWKH 278 Query: 9951 LEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITF 10130 + + +Q G R GA Y H ++ L K ++ RI+ + G+ I D+ Sbjct: 279 FQTAVKSCSQGGIRGGAATAYYPMWHLEVENLLVLKNNKGVDENRIRHMDYGIQINDLMM 338 Query: 10131 ELAKRDEDMYLFSPYDVE-RVYGMPFSDVSVTEKYYEMVD-DSRIKKTKIKAREFFQTLA 10304 E +++ + LFSP+++ +Y F D + YE + D I+K +IKA E F+ Sbjct: 339 ERLGKNDYITLFSPHEMSGELYYSFFEDQDKFRELYEKAEKDPTIRKKRIKALELFELFM 398 Query: 10305 EIQFESGYPYIMFEDTVNRENPI---DGKIIMSNLCSEILQVSQPTTYHDDLSYDQTGKD 10475 + + Y F D N P I SNLC EI + PT D G D Sbjct: 399 TERSGTARIYPQFVDNTNNYTPFIREKAPIRQSNLCCEI---AIPTN-------DVNGPD 448 Query: 10476 IS---CNLGSLNIAKT--MDSPDFGLTIETAIRSLSAVSDMSNITSVPSIARGNDQSHAI 10640 C L + + K D E +R+L + D + VP + + + + Sbjct: 449 AEIGLCTLSAFVLDKFDWQDQDKINELAEVQVRALDNLLDYQDYP-VPEALKAKKRRN-L 506 Query: 10641 GLGQMNLHGYLARERVHYGSEEGLDFTNIYFYSVVYHAVRASNKLAIQTGQTFGGFEKSK 10820 G+G N +LA Y E+ T+ F + Y ++AS KLA + G + +K Sbjct: 507 GVGVTNYAAWLASNFASY--EDANYLTHELFERLQYGLIKASIKLAKEKGPC-EYYSDTK 563 Query: 10821 YASGE----FFDKYTDQEWVPQTEKVAELFKNIHIPTQDDWRELKASVMEHGIYNQNLQA 10988 ++ GE +++K DQ P DW+ + + EHGI N L A Sbjct: 564 WSRGELPIDWYNKKIDQIAAPNYVC--------------DWKNFELNSKEHGIRNSTLSA 609 Query: 10989 VPPTGXXXXXXXXXXXXHPVASKIEIRKEGKLGRVYYPAPYLTNDNLEYYQDAYEI---G 11159 + P P + I KE K G P + + N+ Y A+++ G Sbjct: 610 LMPCESSSQVSNSTNGIEPPRGPVSI-KESKEGNFRQVVPNIEH-NMSLYDYAWKLAKKG 667 Query: 11160 YEKVIDTYAAATQHVDQGLSLTLFF------KDTATTRDINKAQIYAWKKGIKTIYYIRL 11321 + + A + V Q S ++ K + +Y W G K +YY Sbjct: 668 NKPYLTQVAIMLKWVCQSASANTYYDPAVFEKGKVPMSVMLDDLLYFWYFGGKNLYYHNT 727 Query: 11322 R------QLALEGTEVEGCVSCML 11375 R LE + E C +C L Sbjct: 728 RDGSGTDDYELETPKAEDCSACKL 751 >ref|NP_049845.1|NrdA aerobic NDP reductase, large subunit Length = 754 Score = 139 bits (349), Expect = 3e-32 Identities = 160/685 (23%), Positives = 278/685 (40%), Gaps = 33/685 (4%) Frame = +3 Query: 9420 EKLDYLVKNQYYERETLDQYTMNFIRELFNRAYKKKFRFETFLGAFKFYTSYTLKTFDGK 9599 + + Y V Y+ E L +Y+ I L ++ ++ T+ GA + Y +K Sbjct: 102 DHISYCVNAGKYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTG 161 Query: 9600 RFLERYEDRVCMVALHLARGDEQLALQMVDEIIEG--RFQPATPTFLNAG-KKQRGELVS 9770 + E + + + L + + L+ V E Q + PT + AG + + S Sbjct: 162 QIYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSS 221 Query: 9771 CFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIREVGAPIKQIENQSSGVIPVMKL 9950 C ++ D+++SI ++ S ++ + G+ + IR G+ I E + +GVIP K Sbjct: 222 CVVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKH 281 Query: 9951 LEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITF 10130 + + +Q G R GA Y H ++ L K E+ RI+ + GV + D+ Sbjct: 282 FQTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMM 341 Query: 10131 ELAKRDEDMYLFSPYDVE-RVYGMPFSDVSVTEKYYEMVD-DSRIKKTKIKAREFFQTLA 10304 E +++ + LFSP+++ +Y F D + YE + D I+K +IKARE F+ L Sbjct: 342 ERFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLM 401 Query: 10305 EIQFESGYPYIMFEDTVNRENPI---DGKIIMSNLCSEILQVSQPTTYHDDLSYDQTGKD 10475 + + Y+ F D N P I SNLC EI + PT D D Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEI---AIPTN-------DVNSPD 451 Query: 10476 ISCNLGSLNIAKTMDSPDF------GLTIETAIRSLSAVSDMSNITSVPSIARGNDQSHA 10637 L +L+ A +D+ D+ E +R+L + D VP + + + Sbjct: 452 AEIGLCTLS-AFVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYP-VPEAEKAKKRRN- 508 Query: 10638 IGLGQMNLHGYLARERVHYGSEEGLDFTNIYFYSVVYHAVRASNKLAIQTGQTFGGFEKS 10817 +G+G N +LA Y E+ D T+ F + Y ++AS KLA + G + + + Sbjct: 509 LGVGVTNYAAWLASNFASY--EDANDLTHELFERLQYGLIKASIKLAKEKGPS-EYYSDT 565 Query: 10818 KYASGE----FFDKYTDQEWVPQTEKVAELFKNIHIPTQDDWRELKASVMEHGIYNQNLQ 10985 +++ GE +++K DQ P+ DW L+ + GI N L Sbjct: 566 RWSRGELPIDWYNKKIDQIAAPKYVC--------------DWSALREDLKLFGIRNSTLS 611 Query: 10986 AVPPTGXXXXXXXXXXXXHPVASKIEIRKEGKLGRVYYPAPYLTNDNLEYYQDAYEI--- 11156 A+ P P + + KE K G P + + N++ Y +++ Sbjct: 612 ALMPCESSSQVSNSTNGYEPPRGPVSV-KESKEGSFNQVVPNIEH-NIDLYDYTWKLAKK 669 Query: 11157 GYEKVIDTYAAATQHVDQGLSLTLFF------KDTATTRDINKAQIYAWKKGIKTIYYIR 11318 G + + A + V Q S ++ K + +Y W GIK YY Sbjct: 670 GNKPYLTQVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLYGWYYGIKNFYYHN 729 Query: 11319 LR------QLALEGTEVEGCVSCML 11375 R +E + + C +C L Sbjct: 730 TRDGSGTDDYEIETPKADDCAACKL 754 >ref|NP_046670.1|similar to Escherichia coli YedG Length = 224 Score = 137 bits (345), Expect = 1e-31 Identities = 84/214 (39%), Positives = 123/214 (57%), Gaps = 1/214 (0%) Frame = +2 Query: 38342 PSWNVAPTADVPILLERLVDGSPVRQLHVARWGLVPSWAKDPSIGSKMINARSESVLEKP 38521 PS+NVAP+ ++ ++ DGS R L RWGL+P WAKD IG KMINAR+E++ EKP Sbjct: 31 PSYNVAPSQNILTIIN---DGSNNR-LGKLRWGLIPPWAKDEKIGYKMINARAETLSEKP 86 Query: 38522 AFRKATRSRRCAVPADGYYEWKG-EGRSKQPYYVHPKDGRPLVFAGLYEWWKDPSKPEGD 38698 +FRK S+RC +PAD +YEWK + ++K P + K FAGLYE W + PEG+ Sbjct: 87 SFRKPLVSKRCIIPADSFYEWKRLDPKTKIPMRIKLKSSNLFAFAGLYEKW---NTPEGN 143 Query: 38699 PQRWMLSTSIMTTDSPPDGYAGGVLAELTALHDRVPLPMDRETMQAWLDPQADDAAGLVD 38878 P L T + T P + + +HDR+P+ + E + WL+P+ D L Sbjct: 144 P----LYTCTIITTKPNE--------LMEDIHDRMPVILTDENEKEWLNPKNTDPDYLQS 191 Query: 38879 LVRAGAHDVAEGWTIDAVGTAVGNVKNDSPELIQ 38980 L++ D E + + ++ V + KN+SPELI+ Sbjct: 192 LLQPYDADDMEAYQVSSL---VNSPKNNSPELIE 222 >ref|YP_195185.1|ribonucleotide reductase A subunit Length = 776 Score = 137 bits (345), Expect = 1e-31 Identities = 129/540 (23%), Positives = 222/540 (41%), Gaps = 10/540 (1%) Frame = +3 Query: 9723 PTFLNAGKKQR-GELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIREVGAP 9899 PT + AG + + SC L+ +D ++SI S + + + G+ IR V + Sbjct: 216 PTPIMAGVRTTLRQFASCVLIDSDDTLDSIFTSDMAIGKYVAQRAGIGINAGRIRGVNSK 275 Query: 9900 IKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEK 10079 I+ E + +GVIP +K E + Q G R G+ V+ H +I + K E Sbjct: 276 IRGGEVKHTGVIPFLKKFEATVRCCTQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTED 335 Query: 10080 IRIKTLSLGVVIPDITFELAKRDEDMYLFSPYDVERVYGMPFSDVSVTEKYYEMVDDSRI 10259 R++ L + I + +E + ++ LFSP+DV +Y F E Y D+ + Sbjct: 336 NRVRKLDYSIQISKLFYERFISNGEISLFSPHDVPGLYD-AFGTDRFDELYVGYERDTSV 394 Query: 10260 KKTKIKAREFFQTLAEIQFESGYPYIMFEDTVNRENPIDGKIIMSNLCSEILQVSQPTTY 10439 + I A+E F L + + E+G Y+M D N + K+ MSNLC EI + P Sbjct: 395 PRKTIGAQELFLDLLKERAETGRVYVMNIDHCNSHSSFKDKVNMSNLCQEITLPTDPLH- 453 Query: 10440 HDDLSYDQTGKDISCNLGSLNIAKTMDSPDFGLTIETAIRSLSAVSDMSNITSVPSIARG 10619 D G+ C L ++N K + + + A+R L + D N V + Sbjct: 454 ----QIDGNGEIALCILSAINAGKLKNLDELEELCDLAVRGLEELIDYQNY-PVKAAEVS 508 Query: 10620 NDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYFYSVVYHAVRASNKLAIQTGQTF 10799 ++G+G + L YLA++ V Y + + S ++ +++SN++A + G Sbjct: 509 TKNRRSLGIGYIGLAHYLAKQGVKYDDPQAWQLVHELTESFQFYLLKSSNEIAKEKG-AC 567 Query: 10800 GGFEKSKYASGEF-FDKYTDQEWVPQTEKVAELFKNIHIPTQDDWRELKASVMEHGIYNQ 10976 G F+++KY+ G D Y V E+ N DW L++ + G+ + Sbjct: 568 GYFDRTKYSDGILPIDTYKSD--------VDEIVPN---KLNHDWETLRSEIRTFGLRHS 616 Query: 10977 NLQAVPPTGXXXXXXXXXXXXHPVASKIEIR--KEGKLGRVYYPAPYLTNDNLEYYQDAY 11150 L A P+ P + ++ K+G L ++ L N+ + Sbjct: 617 TLSAQMPSESSSVVSNETNGIEPPRDYLSVKKSKKGPLKQIVPQYQTLKNNYTLLWDMPN 676 Query: 11151 EIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYA------WKKGIKTIYY 11312 GY I+ A + DQ +S + + + A +K G KT YY Sbjct: 677 NTGY---INVVAVMQKFFDQAISGNWSYNPENYPNNEVPVSVMAGDLLNTYKYGWKTSYY 733 >ref|NP_818618.1|gp80 Length = 1111 Score = 135 bits (339), Expect = 5e-31 Identities = 175/758 (23%), Positives = 306/758 (40%), Gaps = 53/758 (6%) Frame = +2 Query: 41573 KLAAEHGVPAVLTNAVRYCAEDGAATADVLDSARTLKSLPELTAEPLLQPNGRGWLKTSA 41752 +L+ + GVP V T V Y + +L +AR KS P+ AE W ++ Sbjct: 199 ELSRDTGVPLVATADVHYPFPEQNKLQALLHAARW-KSSPDFAAEA-------SWEHSAN 250 Query: 41753 QMLELGQEIIH----AAGYGATDLTRLLGQTEALADRCRMDPVTDMGWKRPVVPEASVIG 41920 L + IH A G + D + + T LA+RC ++ +P+A + Sbjct: 251 LTYPLSDKEIHDDLVATGLDSADAWKAIQYTSILAERCTVE-----------LPKAKPLR 299 Query: 41921 IAGDPLVELTLRCEAGIGRRFP-GISGKPE-----AEMRARLEHELRIIANLGFASYFLT 42082 D + + I + + ++ +P+ AE RL++E +II + F YFL Sbjct: 300 FVCDKGLTAKQQLSREIAKGWKYRVAQRPDMARRKAEYVKRLQYEFKIITDKDFGDYFLV 359 Query: 42083 VAEVSRMILDMGVXXXXXXXXXXX-LVNYLIDVSQVNPLQ---HDLIFERFLSRDRATLP 42250 ++++ R D + L++YL+ +++++PL + ++FERF+ R+ P Sbjct: 360 ISDLVRRAKDKSIDVGPARGSAAASLISYLLRITEIDPLHPLFNKMVFERFIDPFRSDYP 419 Query: 42251 DIDIDVESAERHNVYRRIFDRFGAERVTLMSMQNGYRARGAVRXXXXXXXXXXXXXXEIA 42430 DID+D + +R + + +G E V ++ GY + ++ IA Sbjct: 420 DIDLDFDDEKRWEIELDAKNLYGPENVASVANNTGYHGKNTLKDVARAYKLPLETFKAIA 479 Query: 42431 KQLW---------RFSARNFREALVEKPELKEFAGRVEQRDFAENQQLDLLVDL-TERLD 42580 K+ S + E+ PE+ AG +E A +L + V L + D Sbjct: 480 KRTTVRVETDDKRNDSISDVLESYATHPEI---AGLIE----AHADKLAMAVALESGNGD 532 Query: 42581 RLPRHISMHPCGVILGDATLLDRTPVQPSGLG-------LPMSQFDKHDMDPMGMLKLDV 42739 S+H CG ++ + D + G + + +DK D + +GMLK+D Sbjct: 533 GNLHSSSVHACGFVIASDPIPDVCAIYLKDKGSGSKKTKVQVIPYDKRDAESLGMLKVDF 592 Query: 42740 LGVRMQSAMAFAVREVIRLHPTKAEVVAAGAHRPGPDGTGPDY---------IAADG--R 42886 LG SA A+ + + + E + ++ DY I G R Sbjct: 593 LG----SATMGAIGLMRKWSRVELEELYLSIYK--------DYDRWIRVQKRIKESGGKR 640 Query: 42887 IDLNAVPLDDEPTYELIRSTHTLGCFQIESPGQRELIGKMAPREFNDLIIDISLFRPGPM 43066 + A D+ + R+ +G Q E R++ + P +F++L +L RPGP Sbjct: 641 VGFTANRFDN--ILKRFRNDDVVGIMQFEGGTTRQVCRNVQPVDFDELAACTALSRPGPY 698 Query: 43067 KSDMVRPFLEHRHGFAPEVYPHP-DLKPVLQETHGVTVFHEQILKTFDVMTKCGLARADE 43243 ++ ++G HP + T G V+ EQI+ + A Sbjct: 699 YGGQYTDYVAVKNGEKDWARIHPKGFDRHVAFTFGQIVYQEQIMWILRDLAGFDNAEVLR 758 Query: 43244 FRRALGNELLEPKVE----EFFRKEARARGYTPEVVDKVWGTLKAFGSFGFCKAHGAAFA 43411 R+ +G +L E + E F A+ G P+ +V+G ++ + F AH ++A Sbjct: 759 VRKIIGKKLGEFQFEAIKQAFIDGCAQTCGVDPDTALRVFGAIRTAAGYAFNIAHAYSYA 818 Query: 43412 VPTYQSAWLKAHHPEAFLAG-LWEHDPGM--YPKRLLV---AEARRLGIPILPLDINRSH 43573 + Y K H F A L+++ G P+R V AEA R+GI D+N S Sbjct: 819 LIAYWQMGFKMDHTTEFFASTLYKNGDGKKEIPRRTAVLQDAEAHRIGIG--GWDLNLSG 876 Query: 43574 AEYRVERVGSGPDRGKLGIRLSLNGIYGLSGAELKRIV 43687 A +R S R + I G++ A K I+ Sbjct: 877 ANWRPYYDHSAHSRNLGTVMPGFQQIPGIAEATAKAIL 914 >ref|NP_803872.1|ORF306 Length = 779 Score = 125 bits (314), Expect = 4e-28 Identities = 128/551 (23%), Positives = 234/551 (42%), Gaps = 13/551 (2%) Frame = +3 Query: 9720 TPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIREVGAP 9899 TP ++N G K RG SC L DN S+ A +++ G+ L R +G P Sbjct: 219 TPNYVNLGTKLRG-FASCCLFASGDNGVSLAMGDYIANIMTQSSAGIGVNLMT-RSIGDP 276 Query: 9900 IKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEK 10079 I+ G P + ++ + AN R GA Y A P+ + + E Sbjct: 277 IRNGLIIHQGKKPYIDVIGKAVR-ANLQNGRGGAVTCYYSAFDPEADMITQLRNPRSTED 335 Query: 10080 IRIKTLSLGVVIPDI-TFELAKRDEDMYLFSPYDVERVYGMPFS-DVSVTEKYYEMVD-D 10250 + + L + + A++D +++F+P+ ++ +S D+ K YE + D Sbjct: 336 RKNRDLHYAFLSNKFFAKKAAQKDGMIFVFNPFTAPDLHDAFYSGDIDKFIKLYEKYEAD 395 Query: 10251 SRIKKTKIKAREFFQTLAEIQFESGYPYIMFEDTVNRENPIDGKIIMSNLCSEILQVSQP 10430 + +KT + AR+ +++ +E+G Y D +N P I SNLC EI + ++P Sbjct: 396 PKFEKTYVNARDLLKSMLVEAYETGTIYSAQIDELNHHTPFKEPIYSSNLCLEIAEPTKP 455 Query: 10431 TTYHDDLSYDQ---TGKDISCNLGSLNIAKTMDSPDFGLTIETAIRSLSAVSDMSNITSV 10601 +DL + G+ +C+L ++ + D + + A++ + ++ + Sbjct: 456 YYRMEDLYSSEDHGRGEIATCSLAAIAVDNVPDKQTYEMAAYYALKMID-YCILNAEYAF 514 Query: 10602 PSIARGNDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYFYSVVYHAVRASNKLAI 10781 P +A + G+G M L ++AR + Y S+ G + +Y ++AS K++ Sbjct: 515 PHLALTAKNRMSAGVGIMGLATHMARAGLKYSSDAGKAEIHFIAERHMYFLIKASLKISK 574 Query: 10782 QTGQTFGGFEKSKYASGEFFDKYTDQEWVPQT--EKVAELFKNIHIPTQDDWRELKASVM 10955 + G K+K+ G W P+ K + W EL+ + Sbjct: 575 ERGNA-PWIHKTKWPEG----------WTPRKTYNKSVDTIIEGGFEELYPWDELEKEIK 623 Query: 10956 EH-GIYNQNLQAVPPTGXXXXXXXXXXXXHPVASKIEIRKEGKLGRVYYPAPYLTNDNLE 11132 E+ GI + L A P +PV ++ + K RV + APY +D+ Sbjct: 624 ENGGIAHSVLAAYMPGEASSKALGSTNGPYPV-RRLILNKTDNGARVLWAAPY-GDDDSY 681 Query: 11133 YYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFK----DTATTRDINKAQIYAWKKGIK 11300 Y+ AY+I + +ID YA + DQ +S L+ + + ++ ++ Y K+G+K Sbjct: 682 VYESAYDIPTKDLIDCYAIIQKWTDQTISADLYRRIVGSEKISSNEMLGNHFYMVKRGMK 741 Query: 11301 TIYYIRLRQLA 11333 T YY+ L A Sbjct: 742 TRYYVNLETAA 752 >ref|NP_899523.1|aerobic ribonucleoside diphosphate reductase large subunit Length = 741 Score = 124 bits (312), Expect = 7e-28 Identities = 166/754 (22%), Positives = 297/754 (39%), Gaps = 21/754 (2%) Frame = +3 Query: 9171 TVADTEVTMPEGQGPRAGAAVEKTAEKSALPAAYKGLG-----YHELNAMLNLYGPNGEI 9335 T D + + + K +K+A+ A + Y + A L +YG ++ Sbjct: 29 TTIDPHQLLARVKAQLSDGMTSKDIQKAAIKIAADSISVEEPDYQYVAARLAMYGLRKDV 88 Query: 9336 QFEADREAAHQYFLQHVNNNTVFFHDLEEKLDYLVKNQYYERETLDQYTMNFIRELFNRA 9515 + D F Q + NT + Y+ E L++++ + + L ++ Sbjct: 89 YGQFDPIP----FKQLIERNTAI--------------EVYDSEILEKWSDSELEYLESQV 130 Query: 9516 -YKKKFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLARGDEQLALQMVDE 9692 +++ F F + G +F Y K E + ++A+ L + ++ L+ V + Sbjct: 131 KHERDFDF-AYAGVMQFKEKYLCKNRGTGAIYETPQYAYMLIAMCLHQEEKYDRLKHVID 189 Query: 9693 IIEG--RFQPATPTFLNAG-KKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVA 9863 + + PT + AG + + SC + D++ SI + + + + G+ Sbjct: 190 FYNAVSTQKLSLPTPIMAGVRTPTRQFSSCVKIESGDSLRSINKVSEAIVDYISKRAGIG 249 Query: 9864 FALTNIREVGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYR 10043 IR G+ ++ E + +GVIP K + + +Q G R GA + H ++ + Sbjct: 250 VNGGAIRAEGSVVRAGEIRHTGVIPFWKHFQTAVKSCSQGGVRGGAATLTYPIWHLEVEK 309 Query: 10044 FLDTKRENADEKIRIKTLSLGVVIPDITFELAKRDEDMYLFSPYDVE-RVYGMPFSDVSV 10220 L K E+ RI+ L V I + + +E + LFSP + +YG ++ Sbjct: 310 LLVLKNNKGVEENRIRHLDYSVSINRLMMQRLVNNEYITLFSPDERHGALYGEYHTNPEE 369 Query: 10221 TEKYY-EMVDDSRIKKTKIKAREFFQTLAEIQFESGYPYIMFEDTVNRENPIDGKIIMSN 10397 E+ Y E+ D +++K +IKA E F + + +G Y +F D +N ++P I SN Sbjct: 370 FERLYLELEADPKVRKKRIKATELFSIFGQERSSTGRIYPIFVDNLNAQSPYIEAIKQSN 429 Query: 10398 LCSEILQVSQPTTYHDDLSYDQTGKDISCNLGSLNIAKTMDSPDFGLTIETAIRSLSAVS 10577 LC EI TY SY++ C L + N+ +F IR+L + Sbjct: 430 LCMEIAL----PTYPLGTSYEEIA---LCTLAAYNLGAIESPSEFARLAPIVIRALDNLL 482 Query: 10578 DMSNITSVPSIARGNDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYFYSVVYHAV 10757 D + A A+G+G N +LA+ V Y S + + ++ Y+ + Sbjct: 483 DYQDYP--VEAAEKAKYRRALGIGITNFAYFLAKNFVGYDSSAKY-LVHEWMEAMSYYNI 539 Query: 10758 RASNKLAIQTGQTFGGFEKSKYASGEF-FDKYTDQEWVPQTEKVAELFKNIHIPTQDDWR 10934 +AS LA + G K+++A G+ D Y +K+ + N+ DW Sbjct: 540 QASMMLAKERGAN-KWHRKTRWAKGQLPIDWYN-----KNVDKLVKPNYNL------DWE 587 Query: 10935 ELKASVMEHGIYNQNLQAVPPTGXXXXXXXXXXXXHPVASKIEIR--KEGKLGRVYYPAP 11108 L+A V+ +G+ N A P P + + K+G +V P Sbjct: 588 ALRADVIRYGMRNDTTSAFMPCESSSQISNSTNGIEPPRGLVSTKQSKDGVFNQV-VPEV 646 Query: 11109 YLTNDNLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDT------ATTRDINKA 11270 L D E + A + VDQ +S ++ + I + Sbjct: 647 DLLKDEYGLAWKVCEKDNFGYLTLVAIMQKFVDQSISANQYYDPSKFPNGKIPMERIFEE 706 Query: 11271 QIYAWKKGIKTIYYIRLRQLALEGTE-VEGCVSC 11369 + GIKT+YY R A +GTE E C C Sbjct: 707 LAFCSHYGIKTLYYSNTRDGA-DGTEDGEDCDGC 739 >ref|YP_006924.1|putative aerobic ribonucleoside diphosphate reductase, large subunit Length = 811 Score = 107 bits (268), Expect = 8e-23 Identities = 125/585 (21%), Positives = 233/585 (39%), Gaps = 36/585 (6%) Frame = +3 Query: 9720 TPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIREVGAP 9899 TP + RG SC L+ D ++SI + + ++ G+ + L + R + P Sbjct: 241 TPPLVGLRSSDRG-FASCCLVDSTDTLDSIDTAEHIVFKMVAARAGIGYHLES-RSIADP 298 Query: 9900 IKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEK 10079 ++ SG +P + ++ S AN R G+ V P+I + + K++ A ++ Sbjct: 299 VRNGAFPHSGKLPYYRHIDRSVK-ANTQQTRGGSATVSYPYFDPEIIQLMQVKQQRATDE 357 Query: 10080 IRIKTLSLGVVIPDITFELAKRDEDMYLFSPYDVERVYGMPFSDVSVTEKYYEMVDDSRI 10259 +I + + ++ + ++ED+ L S + V+ +SD + + + R+ Sbjct: 358 NKIDKMDYSLSFNNLLLKRYLKNEDITLMSYFYAPEVHEAFYSDDEAKFEEIYVAAEKRV 417 Query: 10260 KKT--------------KIKAREFFQTLAEIQFESGYPYIMFEDTVNRENPIDGKIIMSN 10397 K+ A+E T I+ E+G Y NR I M+N Sbjct: 418 ASLTKIDHEGKTVPAAPKVSAKEILDTWLRIRMETGRMYAHHIGESNRHGNFLDPIRMTN 477 Query: 10398 LCSEILQVSQPTTYH------------DDLSYDQTGKDISCNLGSLNIAKTMDSPDFGLT 10541 LC EI Q ++P +H D + + G+ CNLG + + + ++ T Sbjct: 478 LCVEITQPTRP--FHHITELYKTKEQLDQMKPEDIGEVSLCNLGGVVLGRMESLAEWEKT 535 Query: 10542 IETAIRSLSAVSDMSNITSVPSIARGNDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFT 10721 ++ + + ++ + P++ + +G+G MN G +A E + Y E ++ Sbjct: 536 CYILLKFVDTIIEIQDY-PFPTMEYTAKKRRNVGIGLMNAAGAMAAEGLAYEGIEARNWI 594 Query: 10722 NIYFYSVVYHAVRASNKLAIQTGQTFGGFEKSKYASGEF-FDKYTDQEWVPQTEKVAELF 10898 + + Y +AS +LA + G F ++K + G D Y + V EL Sbjct: 595 HREAEKLSYFLHKASVRLAKEQG-ACEWFNRTKPSKGILVIDTY--------KKTVDEL- 644 Query: 10899 KNIHIPTQDDWRELKASVMEHGIYNQNLQAVPPTGXXXXXXXXXXXXHPVASKIEIRKEG 11078 + + + DW L+A ++++G+ N L A P P + I K Sbjct: 645 --VSVGLEMDWESLRADILKYGMRNSVLTAQMPGESSSVLLGVTNSIEPPRKIVSI-KGS 701 Query: 11079 KLGRVYYPAPYLTN-DNLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTR 11255 + +V AP T+ + L Y+ AY++ + I A + Q +S +++ T Sbjct: 702 AVNKVIAIAPGATDWETLMSYKLAYDVDRIEWIKWVATMQKFFSQSISTNMYYDYTKFEN 761 Query: 11256 DINKAQIY------AWKKGIKTIYYIRLRQL--ALEGTEVEGCVS 11366 +I + A K G KT YY G E GC S Sbjct: 762 EIIPGPVVVRDFMTAVKYGWKTWYYANFNTANGGGAGEEAAGCAS 806 >ref|NP_046685.1|putative DNA polymerase Length = 1305 Score = 100 bits (250), Expect = 1e-20 Identities = 138/660 (20%), Positives = 266/660 (40%), Gaps = 54/660 (8%) Frame = +2 Query: 42053 NLGFASYFLTVAEVSRMILDM-----GVXXXXXXXXXXXLVNYLIDVSQVNPLQHDLIFE 42217 N +SY++TV E+ +I D + LVNYL+D +Q+NP+Q+DL Sbjct: 397 NQSMSSYYITVREIINIIWDDECGGDSLVGAARGSAAGYLVNYLLDNTQINPMQYDLPHW 456 Query: 42218 RFLSRDRATLPDIDIDVESAERHNVYRRIFDRFGAERVTLMSMQNGYRARGAVRXXXXXX 42397 R + + R LPDIDID E ++R + + + +RFG +RV ++ ++ A++ Sbjct: 457 RHIHKSRPDLPDIDIDTEGSKRQKILKALRERFGDKRVLQIATFGTEGSKSALQTACRGL 516 Query: 42398 XXXXXXXXEIAKQL-------WRFSARNFREALVEKPELKEFAGRVEQRDFAENQQLDLL 42556 ++ + W + + + +KEF VEQ + L Sbjct: 517 GIDNDISQYLSGMIPFERGSNWPLKHCFYGDKETGRKPIKEFIREVEQYPNLKETAL--- 573 Query: 42557 VDLTERLDRLPRHISMHPCGVILGDATLLDRTPVQPSGLGLPMSQFDKHDMDPMGMLKLD 42736 +++ L S H GVI+ + + + G ++QF+ D + MG +K D Sbjct: 574 -----KIEGLTNKRSSHAAGVIIFNDEYTKSNAMMKTPKGAYITQFNMGDSEAMGSVKFD 628 Query: 42737 VLGVRMQSAMAFAVREVIRLHPTKAEVVAAGAHRPGPDGTGPDYIAADGRIDLNAVPLDD 42916 +L + + + ++I E+ G+ + T YI D + +D Sbjct: 629 LLTIEALDKIRVTLDQLIE----NNEIEWQGSLKE----TYNKYIHPD------VIEYED 674 Query: 42917 EPTYELIRSTHTLGCFQIESPGQRELIGKMAPREFNDLIIDISLFR------PGPM---- 43066 + +E+ + + FQ + + + K+ P+ + + SL R P+ Sbjct: 675 DKLWEMAGNGEIMDLFQFSTEVGHQSVVKVKPKNLLEAAVTNSLMRLMSDGEEQPVDTYV 734 Query: 43067 --KSDMVRPFLE-HRHGFAPEVYPHPDLKPVLQETHGVTVFHEQILKTFDVMTK----CG 43225 K+++ + + E R+G + + ++ L++ +GV E +++ VM K Sbjct: 735 KYKNNLNKWYEEMTRYGLSEKEI--RVMERHLKDIYGVADTQEVVMQM--VMDKDIANFD 790 Query: 43226 LARADEFRRALG--NELLEPKVEEFFRKEARARGYTPEVVDKVWGT-LKAFGSFGFCKAH 43396 + ++ R+++ E + +VEE F K+ + G + +++ VW K + F H Sbjct: 791 IKESNYLRKSIAKKKEDVLKEVEELFFKKGKEIGTSDNLLNYVWNVQFKRQFGYSFSLLH 850 Query: 43397 GAAFAVPTYQSAWLKAHHPEAF--LAGLWEHDPGM---------------YPK-RLLVAE 43522 A+++ Q L + + A L + G+ Y K + Sbjct: 851 TLAYSIIALQELNLNYRYNPLYWNTACLTVNSGGIDTEDTKDNKKTAATNYGKVASAIGN 910 Query: 43523 ARRLGIPILPLDINRSHAEYRVERVGSGPDRGKLGIRLSLNGIYGLSGAELKRIVAGQPY 43702 R+ GI I DIN++ +R D I L G+ G+ + IV +PY Sbjct: 911 IRQRGIKIDLPDINKADFGFRT-------DINNNSILFGLKGMNGIGDDVIHHIVLNRPY 963 Query: 43703 DSLADLRAR----SRLSKPSIKRLAQLGAFDTLHRESGGAANRADLVQHLQALQNRPSKK 43870 D R + K + +L + G FD+ NR ++++ +L + P K Sbjct: 964 SDFNDFIERMFKSGIIKKGQVIQLIKGGCFDSF-------GNRQEIMKAFISLISEPKSK 1016 >ref|NP_542569.1|ribonucleotide reductase Length = 805 Score = 100 bits (249), Expect = 1e-20 Identities = 106/460 (23%), Positives = 185/460 (40%), Gaps = 78/460 (16%) Frame = +3 Query: 9705 RFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIR 9884 RF P +PT +NAG +L +CF++ D+ME I + A + + GGGV +A +++R Sbjct: 93 RFMPNSPTLMNAGTDMN-QLSACFVIEPRDDMEDIFETAQQAALIFQSGGGVGYAFSHLR 151 Query: 9885 EVGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRE 10064 GA I ++SG + M++ +++ + Q G R+GA L A HPDI RF+ KR Sbjct: 152 PKGAFINSTGGEASGPVSFMRVFDETCNQVKQGGKRRGAQMGILRADHPDIGRFIVAKRN 211 Query: 10065 NADEKIRIKTLSLGVVIPDITFELAKRDEDMYLFSPYDVERVYGMPFSDVSVTEKYY--E 10238 + ++ V D E E ++ YD E Y P++ ++ +Y E Sbjct: 212 EGE----FANFNISVATTDNFIEAVDAQES---YTLYDPETDYEEPYTVRELSAHFYSPE 264 Query: 10239 MVDDSR--------------------------IKKTKIKAREFFQTLAEIQFESGYPYIM 10340 D+ R + ++ RE ++ ++ E G P + Sbjct: 265 YQDNPRDAFDDGEGAVVEENLWRDYADEIECELYGERVTLREKWEGHEGLRLEVGEPMEL 324 Query: 10341 -----------------------FEDTVNRENPID------GKIIMSNLCSE-------- 10409 FE++ NR++ D ++ +N C+E Sbjct: 325 PAAFIWDVMIDGAWRNGEPGLFNFEES-NRQHSFDVEEYPEFRMNATNPCAEQMLVEYEA 383 Query: 10410 --------ILQVSQPTTYHDDLSYDQTGKDISCNLGSLNIAK-----TMDSPDFGLTIET 10550 L +S+ +D+ D+ S +L + + +D + TIE Sbjct: 384 CNLGHINLSLMLSEDAPTYDEFLSDKLEDVASGDLSTREAVEWYFETAVDFNELDRTIEA 443 Query: 10551 AIRSLSAVSDMSNITSVPSIARGNDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFTNIY 10730 R L V S+ +P I IGLG M L + V YG+++ + Sbjct: 444 GTRFLDNVVTQSDF-PIPEITERVGGMRKIGLGIMGFAQMLYQMGVPYGTQDSYEVARCV 502 Query: 10731 FYSVVYHAVRASNKLAIQTGQTFGGFEKSKYASGEFFDKY 10850 + AS++LA++ G F ++KSKYA +D++ Sbjct: 503 MRYIDRRGTWASHRLALERG-AFSYWDKSKYADPTEYDEW 541 >ref|YP_164331.1|hypothetical protein Length = 228 Score = 89.7 bits (221), Expect = 2e-17 Identities = 72/213 (33%), Positives = 108/213 (50%), Gaps = 1/213 (0%) Frame = +2 Query: 38348 WNVAPTADVPILLERLVDGSPVRQLHVARWGLVPSWAKDPSIGSKMINARSESVLEKPAF 38527 +NVAP+ V L RL + V Q RWG P WA+D + INAR E V F Sbjct: 35 YNVAPSTAVTTL--RLEGDALVAQ--PIRWGWRPFWARDRAAP---INARVEKVAHGRFF 87 Query: 38528 RKATRSRRCAVPADGYYEWKGEGRS-KQPYYVHPKDGRPLVFAGLYEWWKDPSKPEGDPQ 38704 A R R P G++EW EG KQP+++ +DG P++ A + ++ +P G+ Sbjct: 88 SAAWR-HRALCPVSGWFEWVAEGGPRKQPFHIQHRDGSPILCAAIGQFPGLDDEP-GEQH 145 Query: 38705 RWMLSTSIMTTDSPPDGYAGGVLAELTALHDRVPLPMDRETMQAWLDPQADDAAGLVDLV 38884 ++ I+T DS AGG++ +HDR P+ + E + W+DP ++ Sbjct: 146 GFV----IITADS-----AGGMVD----IHDRRPVVLPPELAREWIDPATTPERAEQIVL 192 Query: 38885 RAGAHDVAEGWTIDAVGTAVGNVKNDSPELIQP 38983 G + +E +T AV AVGNV+N P+LI+P Sbjct: 193 HQG--EPSESFTWYAVDPAVGNVRNQGPQLIEP 223 >ref|NP_046712.1|similar to Bacillus subtilis NrdI (YmaA) Length = 129 Score = 67.4 bits (163), Expect = 1e-10 Identities = 46/134 (34%), Positives = 77/134 (57%), Gaps = 3/134 (2%) Frame = +1 Query: 8794 FSSASENTRRFVEKLGRDAARIPLHQREAELVASEPFVLVVPTYGGTGGEGSVPKQVIRF 8973 + S + N +RFV+ L ++ + + + + ++ F+ + TY T G G VP++ + F Sbjct: 3 YESKTGNVKRFVKALQQEFD-VEAIEITDDTIINQEFIHI--TY--TIGFGEVPERTLSF 57 Query: 8974 LNNPQNRALIRGVIGAGNTNFGDNYCMAGDIIAFKCQIPHLYRFELMGTPEDVRLVNQG- 9150 +N +N+ IRGV +GN +GDNY +AGD ++ K P L +FEL GT +D++ + Q Sbjct: 58 INKNKNK--IRGVAVSGNKVWGDNYGLAGDKLSAKFHTPLLLKFELSGTKQDLQKIIQEV 115 Query: 9151 --LDKFWTLLSQTQ 9186 +DK T L Q Q Sbjct: 116 QLIDKHNTKLDQAQ 129 >ref|YP_195186.1|ribonucleotide reductase B subunit Length = 394 Score = 65.1 bits (157), Expect = 6e-10 Identities = 67/288 (23%), Positives = 124/288 (43%), Gaps = 37/288 (12%) Frame = +2 Query: 11588 FWLPEKVPLSNDVQSWATLTPDEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAITPHEEA 11767 FW PE+V L D + L P+++ + +LD++QG ++ +P P E+ Sbjct: 64 FWRPEEVSLQKDRADYQQLRPEQKHIFTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELES 123 Query: 11768 VYTNIAFMESVHAKSY-----------SSIFSTLAS-----------TKEIDE----AFR 11869 ME VH++SY S +F + S TK DE A Sbjct: 124 AMNIWQTMEMVHSRSYTHIIKNIYPDPSDVFDQIISDEKILERATSVTKAYDEFLQAAQE 183 Query: 11870 WSTENA---NLQKKAQIVMDYYQGDDPLKRKVAST-LLESFLFYSGFYLPMYWSSRAKLT 12037 W N+ L++ + + L R VA+ +LE FY F + + Sbjct: 184 WGAGNSWEHALEEVDSAKWELKELKRKLYRAVANVYILEGIRFYVSFACSFAFGENKLME 243 Query: 12038 NTADLIRLIIRDEAVH---GYYIGYKFQKGLEKVSEEKRQEIKDYTFELLFELYENEVQY 12208 A +I LI RDE+ H I K++ G + E ++ ++ +++ + E E+ + Sbjct: 244 GNAKIISLIARDESQHMTITQNIINKWKAGDDPDMVEIAKQEENNVYDMFKKCVEEEIIW 303 Query: 12209 THDLY---DSVGL-AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNP 12340 L+ +GL A+ ++K++ + AN+ + +G + +F +++ NP Sbjct: 304 ADYLFRDGSMIGLNAKLLQKYVEWTANRRMKAIGMKQIFDVPLSN-NP 350 >ref|NP_943925.1|NrdA-B aerobic NDP reductase large subunit Length = 323 Score = 63.9 bits (154), Expect = 1e-09 Identities = 73/305 (23%), Positives = 122/305 (40%), Gaps = 16/305 (5%) Frame = +3 Query: 10482 CNLGSLNIAKTMDSPDFGLTIETAIRSLSAVSDMSNITSVPSIARGNDQSHAIGLGQMNL 10661 C L + N+ DF A+R+L + D + V ++A + A+G+G N Sbjct: 31 CTLAAYNLGAIEGYEDFLNVARAAVRALDNLLDYQDYPVVQALAA--KKRRALGMGVTNF 88 Query: 10662 HGYLARERVHYGSEEGLDFTNIYFYSVVYHAVRASNKLAIQTGQTFGGFEKSKYASG--- 10832 +LA+ V+Y S + + + + AS +LA + G K+K+A G Sbjct: 89 AYFLAKNFVNYSSGNANKLVHRTMEMMQFANLVASMELAKERGAN-EWHHKTKWADGLLP 147 Query: 10833 -EFFDKYTDQEWVPQTEKVAELFKNIHIPTQDDWRELKASVMEHGIYNQNLQAVPPTGXX 11009 ++++K D VP K+ DW L+A + +HG+ N L A P Sbjct: 148 IDWYNKNVDNI-VPNDLKM-------------DWEWLRAEIKQHGLRNDTLSAFMPCESS 193 Query: 11010 XXXXXXXXXXHPVASKIEIR--KEG----------KLGRVYYPAPYLTNDNLEYYQDAYE 11153 P + + K+G LG Y A +T ++ Y D Sbjct: 194 SQITNSTNGIEPPRGLVSTKQSKDGVFNQLVPEVDMLGSEYETAWQMTKHGMKGYLDIVA 253 Query: 11154 IGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWKKGIKTIYYIRLRQLA 11333 I +K +D +A + D + +DI++AQ K G+K++YY R A Sbjct: 254 I-MQKFVDQMISANTYYDPAVYPGEKIPMKVVLKDISRAQ----KHGVKSLYYSNTRDGA 308 Query: 11334 LEGTE 11348 +GTE Sbjct: 309 -DGTE 312 >ref|YP_006922.1|putative aerobic ribonucleoside diphosphate reductase, small subunit Length = 381 Score = 61.6 bits (148), Expect = 7e-09 Identities = 63/322 (19%), Positives = 134/322 (41%), Gaps = 37/322 (11%) Frame = +2 Query: 11582 NNFWLPEKVPLSNDVQSWATLTPDEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAITPHE 11761 + FW ++ L D + W L + Q++T+ T D+ +++P P Sbjct: 44 SQFWTETEISLEADKKQWPNLPREIQEITLLNLAWQTQTDSFISRAPEAAIMPLVSRPEL 103 Query: 11762 EAVYTNIAFMESVHAKSYSSIFST--------LASTKEIDEAFRWSTENANLQKKAQIVM 11917 E + ++ E +H+++YS+I + S + EAF ++ L + + Sbjct: 104 EGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAFARIADSVELFDELYQLG 163 Query: 11918 DYY------QGDD--------PLKRKVASTLLESFL---------FYSGFYLPMYWSSRA 12028 Y+ +GD+ +KR+ + LL+++ FY+ F + Sbjct: 164 QYFIAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGLEAMQFYASFACTFALAEND 223 Query: 12029 KLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVSEEKRQEIKDYTFELLFELYENEVQY 12208 L A ++LI +DEA+H Q ++ ++ E L + + E+++ Sbjct: 224 ILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVDEAVAKAPAQLLKTLKTEIEW 283 Query: 12209 THDLYDS---VGL-AEDVKKFLHYNANKALMNLGYE--AMFPASVTDVNPAILSALSPNA 12370 H ++ +GL AE ++++L++ A M++G E + P + P I++ L + Sbjct: 284 GHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVEWPSHLPVITKNPIPWIMNWLDTTS 343 Query: 12371 DENHDFFSGSGSSYVIGKAVNT 12436 + G++Y +G+ T Sbjct: 344 LQPAPQEIQIGAAYRVGQVTET 365 >ref|NP_943924.1|NrdB aerobic NDP reductase small subunit Length = 376 Score = 60.5 bits (145), Expect = 2e-08 Identities = 60/248 (24%), Positives = 99/248 (39%), Gaps = 33/248 (13%) Frame = +2 Query: 11588 FWLPEKVPLSNDVQSWATLTPDEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAITPHEEA 11767 FW PE+V LS D + L+ EQ + + +LLD++QG + +P E Sbjct: 47 FWRPEEVDLSKDAIDYNQLSEAEQHVFTQNLKYQSLLDSVQGRAPNLVFLPIVSDVALET 106 Query: 11768 VYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWSTENANLQKKAQIVMDYYQG----- 11932 T +F E++H++SY+ I L + F ++ + +A V YY Sbjct: 107 WITTWSFSETIHSRSYTHIMRNL--YVDPSAVFDRILLDSKIMARATSVTQYYDNLIKEL 164 Query: 11933 --DDPLKRKV----------------------ASTLLESFLFYSGFYLPMYWSSRAKLTN 12040 D L + V A LE+ FY F + R + Sbjct: 165 KTYDLLTQSVFSPELRVAQLTKVKEALYLAMHAVNALEAIRFYVSFACTFSFGERGIMEG 224 Query: 12041 TADLIRLIIRDEAVH--GYYIGYKFQKGLEKVSE--EKRQEIKDYTFELLFELYENEVQY 12208 A ++RLI RDE +H G + + E SE E + ++ ++ E+ E E ++ Sbjct: 225 NAKIMRLIARDEQLHLKGTQYLIRAWQNAEDDSEMYEIAKRLEHKAVQIFLEVAEQEKEW 284 Query: 12209 THDLYDSV 12232 DL +V Sbjct: 285 ARDLLGNV 292 >ref|NP_932466.1|hypothetical protein Length = 323 Score = 59.3 bits (142), Expect = 3e-08 Identities = 72/293 (24%), Positives = 121/293 (41%), Gaps = 16/293 (5%) Frame = +2 Query: 11588 FWLPEKVPLSNDVQSWAT-LTPDEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAI-TPHE 11761 FW ++ + ND Q T LTP E V T+ + G I P Sbjct: 26 FWPWDEPVVDNDAQDLRTKLTPGELNGITTVLKLFTIYERKVGEDYWTGRIARTFGRPEI 85 Query: 11762 EAVYTNIAFME-SVHAKSYSSIFSTLASTKEIDEAFRWS-TENANLQKKAQIVMDYYQGD 11935 + T + +E + HA Y+ + L DEAF S E+ L ++ Q V Sbjct: 86 NRMATLFSAVEGNSHAPFYNKVNEVLYLD---DEAFYTSWKESEELSRRIQFVGKSVSDP 142 Query: 11936 DPLKRKVASTLLESFLFYSGFYLPMYWSSRA----KLTNTADLIRLIIRDEAVHGYYIGY 12103 D K A T +E + YS F ++ ++ + N + L + DE H Sbjct: 143 DDAKSFAAFTFIEGAVLYSSFAFLKHFQAQECGKDLMRNICRGVDLSVADEHHHSIGGAM 202 Query: 12104 KFQKGLEKVSE----EKRQEIKDYTFELLFELYENEVQYTHDLY----DSVGLAEDVKKF 12259 F+ ++ E + R+++KD + ++Y++E ++ D + A++++ F Sbjct: 203 LFRTLCREMMEHHKVDVREKLKDDIIAMAHQVYDHESGIIDLVFAEPIDGI-TADELRIF 261 Query: 12260 LHYNANKALMNLGYEAMFPASVTDVNPAILSALSPNADENHDFFSGSGSSYVI 12418 + N L NLGY+ +F + + NA + HDFF+GSGS Y I Sbjct: 262 VKSRINLCLENLGYDPIFEIESNPIASWFYRTI--NAKKFHDFFTGSGSEYNI 312 >ref|NP_891801.1|aerobic NDP reductase small subunit Length = 386 Score = 57.4 bits (137), Expect = 1e-07 Identities = 60/294 (20%), Positives = 119/294 (40%), Gaps = 52/294 (17%) Frame = +2 Query: 11588 FWLPEKVPLSNDVQSWATLTPDEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAITPHEEA 11767 FW PE++ L+ D + + E++ TLLD+IQG + + P P + Sbjct: 46 FWRPEEISLATDRIQYLNMGDVEKRFFTENLKYQTLLDSIQGRAPSAAFGPIVSDPTLDT 105 Query: 11768 VYTNIAFMESVHAKSYSSIFST--LASTKEIDEAFRWSTENANLQKKAQIVMDYY----- 11926 F E++H++SY+ I + E D+ +N + K+A+ + YY Sbjct: 106 WLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQII----DNPAIMKRAESIGKYYDDVLY 161 Query: 11927 ----------------QGDD------------PLKRKVASTL---------LESFLFYSG 11995 + DD KR + +++ LE+ FY Sbjct: 162 WIRKYENAKEDLRYWEERDDQTALDDARRFFEDTKRDLMASIYLCAHCVNALEAIRFYVS 221 Query: 11996 FYLPMYWSSRAKLTNTADLIRLIIRDEAVH---GYYIGYKFQKGLEKVS-EEKRQEIKDY 12163 F ++ R L A +++ I RDE +H YI ++Q G++ ++ +E++ Sbjct: 222 FACTFSFAERGLLEGNAKIMKFIARDEQLHLKGTQYIIRQWQTGVDGDEWKQIAEELEGE 281 Query: 12164 TFELLFELYENEVQYTHDLYDSVGL----AEDVKKFLHYNANKALMNLGYEAMF 12313 ++ ++ E E ++ L+ + E +K ++ Y A+ + G ++ F Sbjct: 282 ATKIFLDVVEQEKEWVDHLFAMGAIPNLSPEILKTYVEYLADSRMRAAGLKSPF 335 >ref|NP_899524.1|aerobic ribonucleoside diphosphate reductase small subunit Length = 374 Score = 56.6 bits (135), Expect = 2e-07 Identities = 56/284 (19%), Positives = 118/284 (41%), Gaps = 41/284 (14%) Frame = +2 Query: 11588 FWLPEKVPLSNDVQSWATLTPDEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAITPHEEA 11767 FW PE+V L+ D Q + + + + + +LLD++QG ++ +P E Sbjct: 48 FWRPEEVDLTLDSQEFDRMPEHWKHVFTQNLKYQSLLDSVQGRAPNIAFLPICSDNSLEN 107 Query: 11768 VYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWSTENANLQKKAQIVMDYY------- 11926 T F E++H++SY+ I L S F + ++ +A+ V ++Y Sbjct: 108 WITTWDFSETIHSRSYTHIMRNLYSNP--SAVFDEIVLDKSIMARAEAVTEHYDKLIAET 165 Query: 11927 -----------------QGDDPLKRKV-----ASTLLESFLFYSGFYLPMYWSSRAKLTN 12040 + +K + A LE+ FY F ++ + + Sbjct: 166 QKLNQLKTMNLDEAHILMQESAVKEALYLCMHAVNALEAIRFYVSFACTFNFAEQGIMEG 225 Query: 12041 TADLIRLIIRDEAVH--------GYYIGYKFQKGLEKVSEEKRQEIKDYTFELLFELYEN 12196 A +++LI RDE +H + YK + ++S + E + ++ ++ + Sbjct: 226 NAKVMKLIARDEQLHLKGTQALISIWQNYKDDPEMAEISLRLQPEAE----KIFMQVVDQ 281 Query: 12197 EVQYTHDLYDS---VGL-AEDVKKFLHYNANKALMNLGYEAMFP 12316 E ++ H L+ GL A+ + +++ Y A+ + ++G + +P Sbjct: 282 EKEWAHSLFSQGTVPGLNAQILCEYVEYLADSRMRSVGLNSPYP 325 >ref|NP_046572.1|ABC transporter Length = 705 Score = 56.2 bits (134), Expect = 3e-07 Identities = 45/191 (23%), Positives = 97/191 (50%), Gaps = 7/191 (3%) Frame = +3 Query: 21186 VLRSVDMDVRRGEVVALIGPSGSGKTTVLRCLNGL-EIPDDGVVDFVGQLAVDFSAPVSK 21362 ++ +++ + R + V +IG SG+GK+T + L+ L ++PD + ++ L ++ +S Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSI--YLNGLDINRYDHLSI 555 Query: 21363 KQLAALRDRSAMVFQHYNLFPHKTVLENIIEGPVQVQKRPKAEAI-AEARDLLARVGLTE 21539 ++ D + +F+ T+ EN+ G + Q + I ++ + + + + Sbjct: 556 RKRIVYIDENPFLFKG-------TIKENLCMGEIFDQNEIENACIMSQCHEFICNL---D 605 Query: 21540 KEKSYPFE-----LSGGQQQRVGIVRALALRPQLLLFDEPTSALDPELVGDVLTVIKELA 21704 K+ SY LS GQ+QR+ + RA+ +PQ+L+ DE S +DP+ + + + L Sbjct: 606 KQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPD---NTKLIYETLH 662 Query: 21705 DEGWTMVVVTH 21737 ++++TH Sbjct: 663 RMDCLIILITH 673 >ref|YP_024509.1|putative NrdI protein Length = 130 Score = 55.8 bits (133), Expect = 4e-07 Identities = 34/111 (30%), Positives = 58/111 (52%) Frame = +1 Query: 8785 LIYFSSASENTRRFVEKLGRDAARIPLHQREAELVASEPFVLVVPTYGGTGGEGSVPKQV 8964 ++YFS + T R V K+ + + + + ++PF+L+ PTY +G++PKQ+ Sbjct: 9 IVYFSGTGQ-TERLVNKININNSFETFRVKSGKEKVNKPFILITPTYK----KGAIPKQI 63 Query: 8965 IRFLNNPQNRALIRGVIGAGNTNFGDNYCMAGDIIAFKCQIPHLYRFELMG 9117 RFL + + VIG GN +G N+C A I+ +IP + + E G Sbjct: 64 ERFL---EINGSPKEVIGTGNKQWGSNFCGASKKISEMFKIPLIAKVEQSG 111 >ref|NP_817487.1|gp37 Length = 81 Score = 53.1 bits (126), Expect = 2e-06 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Frame = +1 Query: 8431 PACVQCNATYRALDKKGITYQSVDISQDADALERLKALGYMQAPVVVTDQDH-----WSG 8595 P C C T + L KKGI +++VD+++ A + + LGY PVVV D W G Sbjct: 9 PGCKPCEGTKKMLTKKGIEFEAVDVTEVPSAAKVVTDLGYAGVPVVVVDCGDEASWTWHG 68 Query: 8596 FRPDKIEEL 8622 F P +IE+L Sbjct: 69 FAPSQIEKL 77 >ref|NP_569800.1|glutaredoxin gp67 Length = 81 Score = 50.8 bits (120), Expect = 1e-05 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Frame = +1 Query: 8431 PACVQCNATYRALDKKGITYQSVDISQDADALERLKALGYMQAPVV---VTDQDHWSGFR 8601 P C +CN T RALDK G+ Y V + QD KA G+ AP+V +TD WS FR Sbjct: 9 PECHKCNLTKRALDKAGVEYTEVRLDQDPALAADFKAKGHKTAPIVRDALTD-TMWSDFR 67 Query: 8602 PDKIE 8616 D I+ Sbjct: 68 GDLIK 72 >ref|NP_049841.1|NrdB aerobic NDP reductase, small subunit Length = 388 Score = 50.4 bits (119), Expect = 2e-05 Identities = 56/247 (22%), Positives = 98/247 (39%), Gaps = 46/247 (18%) Frame = +2 Query: 11573 RLVNNFWLPEKVPLSNDVQSWATLTPDEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAIT 11752 R ++ FW PE+V L D + L +Q + +LLD+IQG + L+ Sbjct: 42 RQISFFWRPEEVNLMMDAAQFNKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISD 101 Query: 11753 PHEEAVYTNIAFMESVHAKSYSSIFSTLASTKE-------IDEAFRWSTENANLQ----- 11896 P + F E++H++SY+ I L + +DEA E+ Sbjct: 102 PSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVL 161 Query: 11897 ------KKAQIVMDYYQG----------DDPLKRKVASTL---------LESFLFYSGFY 12001 + A+ +++YY+ + KR + +L LE+ FY F Sbjct: 162 VKTREWENAKDMVEYYKDQGLILADKDVEQRAKRDLMKSLYLCLHVINALEAIRFYVSFA 221 Query: 12002 LPMYWSSRAK-LTNTADLIRLIIRDEAVH---GYYIGYKFQKGLE-----KVSEEKRQEI 12154 + + + A +++ I RDE +H YI + Q G + K+++E QE Sbjct: 222 CTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVKIAQECEQEA 281 Query: 12155 KDYTFEL 12175 D E+ Sbjct: 282 VDIFMEV 288 >ref|NP_818357.1|gp56 Length = 79 Score = 45.1 bits (105), Expect = 7e-04 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 5/67 (7%) Frame = +1 Query: 8437 CVQCNATYRALDKKGITYQSVDISQDADALERLKALGYMQAPVVVTDQDH-----WSGFR 8601 CV C T LDK GI Y+SV D + R + G PVVV ++D WSGFR Sbjct: 8 CVMCRTTKARLDKFGIPYESV--VTDEETANRFRNEGRSSYPVVVVERDGQEPWVWSGFR 65 Query: 8602 PDKIEEL 8622 +I++L Sbjct: 66 DTEIKKL 72 >ref|NP_046872.1|gp56 Length = 90 Score = 43.9 bits (102), Expect = 0.001 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%) Frame = +1 Query: 8431 PACVQCNATYRALDKKGITYQSVDISQDADALERLK-ALGYMQAPVVVTDQ-DHWSGFRP 8604 P C C+ + LD G+ Y VD++++A+A ++ L PV+VTD + G++P Sbjct: 14 PGCRPCHRIQQFLDDAGVEYDVVDLTRNAEAKTYVQDVLKASSVPVIVTDHFEPIIGYQP 73 Query: 8605 DKIEEL 8622 DK++EL Sbjct: 74 DKVDEL 79 >ref|NP_861928.1|NrdB aerobic NDP reductase, small subunit Length = 390 Score = 43.9 bits (102), Expect = 0.001 Identities = 35/135 (25%), Positives = 61/135 (45%) Frame = +2 Query: 11540 IQDDKDVDVWNRLVNNFWLPEKVPLSNDVQSWATLTPDEQQLTMRVFTGLTLLDTIQGTV 11719 IQ K + +++ FW PE+V L D + L +Q + +LLD+IQG Sbjct: 30 IQRHKVFEELIEILSFFWRPEEVNLMLDSAQFNKLPQFQQDICTNNLKYQSLLDSIQGRA 89 Query: 11720 GAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWSTENANLQK 11899 + L+ P + F E++H++SY+ I L + + + F + + K Sbjct: 90 PSAVLMALISDPSLDTWVATWTFSETIHSRSYTHIMRNLYT--DPSKVFDEIVLDEAIMK 147 Query: 11900 KAQIVMDYYQGDDPL 11944 +A+ + YY DD L Sbjct: 148 RAESIGKYY--DDVL 160 >ref|NP_039720.1|predicted 11.4Kd protein Length = 103 Score = 42.4 bits (98), Expect = 0.004 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Frame = +1 Query: 8431 PACVQCNATYRALDKKGITYQSVDISQDADALERL-KALGYMQAPVVVTD-QDHWSGFRP 8604 P C C L GI + +VD++ +++A + + K L M PVVVTD G++P Sbjct: 27 PGCKPCERVKDKLTAAGIDFDAVDVTANSEAYDYVTKVLNAMSVPVVVTDTHKPILGYQP 86 Query: 8605 DKIEEL 8622 D+++EL Sbjct: 87 DQLDEL 92 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 40.0 bits (92), Expect = 0.021 Identities = 48/152 (31%), Positives = 59/152 (38%) Frame = +3 Query: 48213 PGRRVPHVRSGHDRQDHRSRVRAGHGQGPDRPLRRSPGPAVPRRGLHRRVRGPDPGRLR* 48392 P RR+P R+G R D R R G +RR GP R G R R P RLR Sbjct: 418 PVRRLPRRRAGVCRADRR---REGQ-------VRRLRGPRQGRVGQGGRARCAGP-RLRF 466 Query: 48393 PHRQVELQGSLRLWRHQPRRGAAPHQRGCSHDPVQGRSRYGRCLQRHRPHAPDPFRDRQA 48572 H V QG + +G A G +H V+ GR LQ H P+ + Sbjct: 467 DHSGVGEQGRCQ------GQGRADQDGGGAHQGVEVLGGRGR-LQGHPAGQPERGAVQHV 519 Query: 48573 CRPARGRALRRGQGTAGPVRTGQGSCCRRQAP 48668 P GR+L R R S CR + P Sbjct: 520 GVPGPGRSLARSGQRQRGRRRNAISLCRHEQP 551 >ref|NP_932465.1|hypothetical protein Length = 570 Score = 40.0 bits (92), Expect = 0.021 Identities = 70/346 (20%), Positives = 132/346 (38%), Gaps = 20/346 (5%) Frame = +3 Query: 10392 SNLCSEILQVSQPTTYHDDLSYDQTGKDISCNLGSLNIAK----TMDSPDFGLTIETAIR 10559 S LC+EI S DD+ +C L SLN++ T D + + ++ Sbjct: 264 SQLCTEIALPS------DDMH------TFTCILSSLNVSLWDEITADDIKWSVRFLDSVC 311 Query: 10560 S--LSAVSDMSNITSVPSIARGNDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYF 10733 S L+ ++S T +I R +++ A+GLG + H YL + + S N + Sbjct: 312 SEFLAKAKELSYDTLHKAI-RFTEKARALGLGTLGFHTYLQMNDIAFESGAAHILNNQLY 370 Query: 10734 YSVVYHAVRASNKLAIQTGQTFGGFEKSKYASGEFFDKYTDQEWVPQTEKVAELFKNIHI 10913 + A S +LA ++Y + EW T +N + Sbjct: 371 AEIKKAAEEGSRELA---------------------EEYGEPEWCKGTG-----MRNATL 404 Query: 10914 PTQDDWRELKASVMEHGIYNQNLQAVPPTGXXXXXXXXXXXXHPVASKI--------EIR 11069 T + ++++ G+ V + +PV +K+ EI+ Sbjct: 405 ITIAP--NMSSALLAGGVSQGVEPLVCNSFIQQSNAGDFVRSNPVLAKVLKDRLTDKEIQ 462 Query: 11070 KEGKLGRVYYPAPY-----LTNDNLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFF 11234 + + Y+ LT+ ++ AYEI +I +A +H+DQ S+ LFF Sbjct: 463 ELMEDIATYHNGSVQHLDILTDHEKSVFKTAYEIDQHAIIRLASARQRHIDQAQSINLFF 522 Query: 11235 K-DTATTRDINKAQIYAWKKGIKTIYYIRLRQLALEGTEVEGCVSC 11369 D + + + + +K++YY+R + + C++C Sbjct: 523 SADEKESVIASVHRAFMDDPRLKSLYYLRSERGVKASSGKSDCLAC 568 >ref|NP_700395.1|putative tail protein Length = 173 Score = 37.7 bits (86), Expect = 0.11 Identities = 23/76 (30%), Positives = 40/76 (52%) Frame = +1 Query: 1654 LRPAPGDAVLGEEIFGPLLPLVPVSGRDEAIRMINSGSKPLAVYVFSEEDAVRSAFAAET 1833 + PAPGD ++ + + +LPL PV+G + S P+ V + + +R+A AE Sbjct: 51 VNPAPGDDLV-KAVRDHILPLAPVAGGGLFVFAATEKSIPVTVALAKDTPEIRTAIIAEL 109 Query: 1834 SSGALAYGAPAAHLTV 1881 ++ L GAP+ + V Sbjct: 110 NALMLRDGAPSGKIYV 125 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 37.0 bits (84), Expect = 0.18 Identities = 35/95 (36%), Positives = 38/95 (40%), Gaps = 7/95 (7%) Frame = +3 Query: 48201 RHPGPGRRVP-------HVRSGHDRQDHRSRVRAGHGQGPDRPLRRSPGPAVPRRGLHRR 48359 R P P RRV H R G R R RVRA G G R RR P P PR RR Sbjct: 164 RRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRR 223 Query: 48360 VRGPDPGRLR*PHRQVELQGSLRLWRHQPRRGAAP 48464 G R+ + SLR RH+ R P Sbjct: 224 RTG----------RRHRRRASLRP-RHRRHRSTPP 247 >ref|NP_945089.1|gp58 Length = 297 Score = 37.0 bits (84), Expect = 0.18 Identities = 34/135 (25%), Positives = 52/135 (38%) Frame = -3 Query: 2993 RLGSFAAAANRLGYTASAVSQQMSALERDTGVDLFQRSARSIQPTEAALVMTRHAAKVLT 2814 R G+F AA L AVS+Q+ LE G LF R A+++ T A +L Sbjct: 20 RHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHAILA 79 Query: 2813 DIEALMAAASRTHDATHQELRLGIFPSLATYVLPRILQNPKWKDLGIDLRVSVAEPSQTI 2634 D + A A + T L + AT L + + + +R+ V E + Sbjct: 80 D--CVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILVREGVFNL 137 Query: 2633 QGLRTGGELDVALVY 2589 E D+ + Y Sbjct: 138 ----NAAEFDIGVYY 148 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 241,652,679 Number of Sequences: 14420 Number of extensions: 5323328 Number of successful extensions: 19882 Number of sequences better than 0.5: 40 Number of HSP's better than 0.5 without gapping: 7200 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 19803 length of database: 3,019,461 effective HSP length: 116 effective length of database: 1,346,741 effective search space used: 21807777013 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig20 (48,640 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_835555.1|hypothetical protein, similar to scaffolding pro... 79 4e-14 ref|NP_817552.1|gp103 78 9e-14 ref|NP_958605.1|77ORF015 77 2e-13 ref|NP_795404.1|head maturation protease 76 3e-13 ref|NP_817551.1|gp102 74 2e-12 ref|NP_858955.1|protease of the ClpP family 68 7e-11 ref|NP_050150.1|ClpP-like protease 61 1e-08 ref|NP_839925.1|putative ClpP protease 60 2e-08 ref|NP_076678.1|protease 60 2e-08 ref|NP_038326.1|ORF25 60 3e-08 ref|NP_116498.1|putative ATP-dependent ClpP protein 59 4e-08 ref|NP_049395.1|putative scaffolding protein 58 1e-07 ref|NP_061501.1|ClpP protease 58 1e-07 ref|NP_075503.1|protease 57 1e-07 ref|NP_803338.1|scaffolding protease 57 1e-07 ref|NP_795465.1|putative ClpP protease ATP-dependent protease pr... 57 2e-07 ref|NP_049970.1|Predicted clp-protease 54 2e-06 ref|YP_025030.1|putative ClpP-like protease 48 1e-04 ref|NP_818463.1|gp163 47 1e-04 ref|NP_944246.1|putative single-strand DNA binding protein 47 2e-04 ref|NP_817947.1|gp96 45 9e-04 ref|YP_164279.1|single-stranded DNA-binding protein 44 0.001 ref|NP_899255.1|ClpP 44 0.002 ref|NP_510985.1|Clp protease 40 0.028 ref|YP_024843.1|Pas57 39 0.036 ref|NP_817990.1|gp17 36 0.40 >ref|NP_835555.1|hypothetical protein, similar to scaffolding protein Length = 245 Score = 79.0 bits (193), Expect = 4e-14 Identities = 46/146 (31%), Positives = 78/146 (53%) Frame = -1 Query: 17896 NAICSQLLLLSAENPDKDIYLYINSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQ 17717 ++ C + +L E D+D+ + INS GG++ AG IY ++ V T +AAS Sbjct: 24 DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 83 Query: 17716 FLLSSGTKGKRYATPNARILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTADQTGQT 17537 + +G + +P AR+++H PS G A D+ AE + H+ ++MAE A + G+ Sbjct: 84 LIAMAGDHIEM--SPVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKN 141 Query: 17536 VETILKDNDRDKWFTAPEALEYGFFD 17459 + +++ R+ W A EA+E GF D Sbjct: 142 KQELVEMMARETWLNADEAIEQGFAD 167 Score = 44.3 bits (103), Expect = 0.001 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 1/165 (0%) Frame = -1 Query: 17230 EDRIIFLGVQVDDASADDVMAQLLVLESTDPDRDITLYINSPGGSFTAMTAIYDTMQYIR 17051 ED+ ++ + +D DV+ QL D D+ + INS GG+ A + IY ++R Sbjct: 13 EDKWVYEMLGMDSTCPKDVLTQLEF-----SDEDVDIIINSNGGNLVAGSEIY---THLR 64 Query: 17050 PEIQTVCLGQXXXXXXXXXXAGTPGKRLAL-PNARVLIHQPALSGGQGGQASDLEIQAAE 16874 V + G + + P AR++IH P S G+A DL A Sbjct: 65 AHKGKVNVRITAIAASAASLIAMAGDHIEMSPVARMMIHNP--SSIAQGEAKDLNHAAET 122 Query: 16873 VMRMRSWLEDTLAKHSGRTSEQVNNDIERDKILTAAEAQSYGLID 16739 + + + + A +G+ +++ + R+ L A EA G D Sbjct: 123 LEHVGQIMAEAYAVRAGKNKQELVEMMARETWLNADEAIEQGFAD 167 >ref|NP_817552.1|gp103 Length = 286 Score = 77.8 bits (190), Expect = 9e-14 Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 26/215 (12%) Frame = -1 Query: 18019 QQAGAPRMATVDPAAQDNYIYNRLLKERIIWLGSE----------VRDENANAICSQLLL 17870 ++A R T Q+ Y+ N+ +++ L + V D + A +QL L Sbjct: 73 KEAALARHQTAAAIGQELYVANQERTQKLELLRNHYVHEYHFVDGVNDYSVEACLNQLAL 132 Query: 17869 LSAENPDKDIYLYINSPGGSVTAGM------AIYDTMQFIPND-------VVTVATGLAA 17729 E+P+ D+++ +NSPGGSV AGM A Y T + +D G+AA Sbjct: 133 WHREDPNCDMHIVMNSPGGSVIAGMHLFDQIAAYSTRPWDTSDRPKGTHKTTMTVRGMAA 192 Query: 17728 SMGQFLLSSGTKGKRYATPNARILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTADQ 17549 SMG LL S +R P A +++H+ S G GG +I+ H+ +A++ + Sbjct: 193 SMGGILLQS--VDERIIGPEAYLMIHEISAGTGGKIGEIEDMVGWYRHLCARIAKVFVHR 250 Query: 17548 TGQTVETILKD---NDRDKWFTAPEALEYGFFDKI 17453 G + D D W + EAL YGF D+I Sbjct: 251 AGGKITAEEFDAGWKRTDWWLDSDEALRYGFVDRI 285 Score = 43.5 bits (101), Expect = 0.002 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 14/170 (8%) Frame = -1 Query: 17200 VDDASADDVMAQLLVLESTDPDRDITLYINSPGGSFTA-----------MTAIYDTMQYI 17054 V+D S + + QL + DP+ D+ + +NSPGGS A T +DT Sbjct: 118 VNDYSVEACLNQLALWHREDPNCDMHIVMNSPGGSVIAGMHLFDQIAAYSTRPWDTSDRP 177 Query: 17053 RPEIQTVCLGQXXXXXXXXXXAGTPGKRLALPNARVLIHQPALSGGQGGQASDLEIQAAE 16874 + +T + + +R+ P A ++IH+ +S G GG+ ++E Sbjct: 178 KGTHKTTMTVRGMAASMGGILLQSVDERIIGPEAYLMIHE--ISAGTGGKIGEIEDMVGW 235 Query: 16873 VMRMRSWLEDTLAKHSGR--TSEQVNNDIER-DKILTAAEAQSYGLIDQV 16733 + + + +G T+E+ + +R D L + EA YG +D++ Sbjct: 236 YRHLCARIAKVFVHRAGGKITAEEFDAGWKRTDWWLDSDEALRYGFVDRI 285 >ref|NP_958605.1|77ORF015 Length = 245 Score = 76.6 bits (187), Expect = 2e-13 Identities = 44/146 (30%), Positives = 77/146 (52%) Frame = -1 Query: 17896 NAICSQLLLLSAENPDKDIYLYINSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQ 17717 ++ C + +L E D+D+ + INS GG++ AG IY ++ V T +AAS Sbjct: 24 DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 83 Query: 17716 FLLSSGTKGKRYATPNARILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTADQTGQT 17537 + +G + +P AR+++H PS G D+ AE + H+ ++MAE A + G+ Sbjct: 84 LIAMAGDHIEM--SPVARMMIHNPSSIAQGEVKDLNHAAETLEHVGQIMAEAYAVRAGKN 141 Query: 17536 VETILKDNDRDKWFTAPEALEYGFFD 17459 + +++ ++ W A EA+E GF D Sbjct: 142 KQELIEMMAKETWLNADEAIEQGFAD 167 Score = 41.6 bits (96), Expect = 0.007 Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 1/165 (0%) Frame = -1 Query: 17230 EDRIIFLGVQVDDASADDVMAQLLVLESTDPDRDITLYINSPGGSFTAMTAIYDTMQYIR 17051 ED+ ++ + +D DV+ QL D D+ + INS GG+ A + IY ++R Sbjct: 13 EDKWVYEMLGMDSTCPKDVLTQLEF-----SDEDVDIIINSNGGNLVAGSEIY---THLR 64 Query: 17050 PEIQTVCLGQXXXXXXXXXXAGTPGKRLAL-PNARVLIHQPALSGGQGGQASDLEIQAAE 16874 V + G + + P AR++IH P S G+ DL A Sbjct: 65 AHKGKVNVRITAIAASAASLIAMAGDHIEMSPVARMMIHNP--SSIAQGEVKDLNHAAET 122 Query: 16873 VMRMRSWLEDTLAKHSGRTSEQVNNDIERDKILTAAEAQSYGLID 16739 + + + + A +G+ +++ + ++ L A EA G D Sbjct: 123 LEHVGQIMAEAYAVRAGKNKQELIEMMAKETWLNADEAIEQGFAD 167 >ref|NP_795404.1|head maturation protease Length = 268 Score = 75.9 bits (185), Expect = 3e-13 Identities = 46/132 (34%), Positives = 71/132 (53%) Frame = -1 Query: 17848 KDIYLYINSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATPN 17669 +DI + +NS GG V G IY ++ P +V V TGLAAS+ ++ +G K A+P Sbjct: 42 EDIQVRLNSGGGEVFVGSEIYSALKDYPGNVEVVITGLAASIASIIMLAGDVIK--ASPM 99 Query: 17668 ARILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTADQTGQTVETILKDNDRDKWFTA 17489 A+I++H S G G +K +E++ + +A + A +TG+ I + D + WFTA Sbjct: 100 AQIMIHNASWGSYGDYRQLKHDSEVVENASISLAGMYAQKTGKQETEIRELLDAETWFTA 159 Query: 17488 PEALEYGFFDKI 17453 A E G D I Sbjct: 160 NSAKEIGLIDDI 171 Score = 39.3 bits (90), Expect = 0.036 Identities = 34/134 (25%), Positives = 56/134 (41%) Frame = -1 Query: 17131 DITLYINSPGGSFTAMTAIYDTMQYIRPEIQTVCLGQXXXXXXXXXXAGTPGKRLALPNA 16952 DI + +NS GG + IY ++ ++ V G AG K A P A Sbjct: 43 DIQVRLNSGGGEVFVGSEIYSALKDYPGNVEVVITGLAASIASIIMLAGDVIK--ASPMA 100 Query: 16951 RVLIHQPALSGGQGGQASDLEIQAAEVMRMRSWLEDTLAKHSGRTSEQVNNDIERDKILT 16772 +++IH S G G L+ + V L A+ +G+ ++ ++ + T Sbjct: 101 QIMIHN--ASWGSYGDYRQLKHDSEVVENASISLAGMYAQKTGKQETEIRELLDAETWFT 158 Query: 16771 AAEAQSYGLIDQVL 16730 A A+ GLID +L Sbjct: 159 ANSAKEIGLIDDIL 172 >ref|NP_817551.1|gp102 Length = 146 Score = 73.6 bits (179), Expect = 2e-12 Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 1/107 (0%) Frame = -2 Query: 33585 TPGGVPTASFRLGSTDRRYDRASSTWVDGNTNWFTVQGYRQLAGNMGCSIKKGQRVIIVG 33406 T GG A+F + S +RR D A WVDG+ + +R A N+ S++KGQRVI+ G Sbjct: 22 TQGGQAVANFTVVSNERRRD-AQGNWVDGDATFLRCTIWRDAAENVAESLQKGQRVIVHG 80 Query: 33405 RLKMRSWE-KDGRIYHAAEIDAESVGHDLMWGSANFTRTAGNSAHSG 33268 LK RS+E K+G E++ + +G L W +A ++ GNS G Sbjct: 81 YLKQRSFETKEGDKRTVIEVEVDEIGPSLRWATARVSKVGGNSNGGG 127 >ref|NP_858955.1|protease of the ClpP family Length = 245 Score = 68.2 bits (165), Expect = 7e-11 Identities = 39/131 (29%), Positives = 71/131 (54%) Frame = -1 Query: 17845 DIYLYINSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATPNA 17666 DI + I+SPGG + AG+AIY+ + V G AAS + +G + + P+A Sbjct: 74 DITVNIDSPGGDMFAGLAIYNLLLAHKGRVTVNVIGRAASAASVIAMAGDQINMH--PSA 131 Query: 17665 RILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTADQTGQTVETILKDNDRDKWFTAP 17486 I++H +GG + ++ +E++ MA++ +TG + +TI++ D + W +A Sbjct: 132 FIMIHNCHLVVGGNSKELAEVSEMMKPFDSAMADIYVARTGMSKDTIVQMMDAETWMSAE 191 Query: 17485 EALEYGFFDKI 17453 E+++ GF D I Sbjct: 192 ESVKLGFADSI 202 >ref|NP_050150.1|ClpP-like protease Length = 242 Score = 60.8 bits (146), Expect = 1e-08 Identities = 36/131 (27%), Positives = 64/131 (48%) Frame = -1 Query: 17845 DIYLYINSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATPNA 17666 D+ L INSPGG V AG IY ++ V+ TG A S ++ + + + +P A Sbjct: 46 DVTLEINSPGGYVDAGSEIYTALKEYQGQVIAKITGQACSAASWIALAADRIE--MSPTA 103 Query: 17665 RILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTADQTGQTVETILKDNDRDKWFTAP 17486 ++++H+ S G + D+ + + K +L + +TG + + + W A Sbjct: 104 QMMIHRASTISIGNSDDLASDLNALNSLDKSFVDLYSQRTGLDAQEVYRLMCNTTWMNAK 163 Query: 17485 EALEYGFFDKI 17453 EA++ GF D+I Sbjct: 164 EAVDKGFADEI 174 Score = 42.4 bits (98), Expect = 0.004 Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 3/180 (1%) Frame = -1 Query: 17131 DITLYINSPGGSFTAMTAIYDTMQYIRPEIQTVCLGQXXXXXXXXXXAGTPGKRLAL-PN 16955 D+TL INSPGG A + IY ++ + ++ GQ R+ + P Sbjct: 46 DVTLEINSPGGYVDAGSEIYTALKEYQGQVIAKITGQ---ACSAASWIALAADRIEMSPT 102 Query: 16954 ARVLIHQPALSGGQGGQASDLEIQAAEVMRMRSWLEDTLAKHSGRTSEQVNNDIERDKIL 16775 A+++IH+ S G + DL + + D ++ +G +++V + + Sbjct: 103 AQMMIHR--ASTISIGNSDDLASDLNALNSLDKSFVDLYSQRTGLDAQEVYRLMCNTTWM 160 Query: 16774 TAAEAQSYGLIDQVLDSRKIKPQAISR*SARHAEP--VRFMKNGPHRLSLSMRKVPPLRP 16601 A EA G D+++ KP ++ + +P + +KN H+ S + V PL+P Sbjct: 161 NAKEAVDKGFADEIMFQNDKKPALVNADGSLSVKPDMINKIKNLLHKKS-TENVVKPLQP 219 >ref|NP_839925.1|putative ClpP protease Length = 235 Score = 60.1 bits (144), Expect = 2e-08 Identities = 38/133 (28%), Positives = 65/133 (48%) Frame = -1 Query: 17851 DKDIYLYINSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATP 17672 D++I L I S GG V A IY ++ V GLAAS + +G +P Sbjct: 42 DEEIVLNIASNGGDVFAASEIYTAIKMNGKPVTVNIQGLAASAASVIAMAGDTVN--ISP 99 Query: 17671 NARILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTADQTGQTVETILKDNDRDKWFT 17492 A++++H+ G G A D + +A+++ + + +A +TG +L+ + W T Sbjct: 100 TAQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDLLQLMSNETWMT 159 Query: 17491 APEALEYGFFDKI 17453 A +A++ GF D I Sbjct: 160 AQDAVDKGFADNI 172 >ref|NP_076678.1|protease Length = 235 Score = 60.1 bits (144), Expect = 2e-08 Identities = 38/133 (28%), Positives = 65/133 (48%) Frame = -1 Query: 17851 DKDIYLYINSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATP 17672 D++I L I S GG V A IY ++ V GLAAS + +G +P Sbjct: 42 DEEIVLNIASNGGDVFAASEIYTAIKMNGKPVTVNIQGLAASAASVIAMAGDTVN--ISP 99 Query: 17671 NARILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTADQTGQTVETILKDNDRDKWFT 17492 A++++H+ G G A D + +A+++ + + +A +TG +L+ + W T Sbjct: 100 TAQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDLLQLMSNETWMT 159 Query: 17491 APEALEYGFFDKI 17453 A +A++ GF D I Sbjct: 160 AQDAVDKGFADNI 172 >ref|NP_038326.1|ORF25 Length = 221 Score = 59.7 bits (143), Expect = 3e-08 Identities = 39/133 (29%), Positives = 68/133 (51%) Frame = -1 Query: 17851 DKDIYLYINSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATP 17672 D++I L I S GG V A IY ++ +V GLAAS + +G + +P Sbjct: 41 DEEITLNIASNGGDVFAASEIYTMLKASGKRIVVNVQGLAASAASVISMAGDTVR--ISP 98 Query: 17671 NARILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTADQTGQTVETILKDNDRDKWFT 17492 A+I++H+ S GI G + D++ Q+ ++ + + +A +TG +L ++ W Sbjct: 99 TAQIMIHKASTGIRGNSDDLEHQSAVLSSIDESIALAYEMKTGLKQTELLDLMAKETWLN 158 Query: 17491 APEALEYGFFDKI 17453 A A++ GF D+I Sbjct: 159 AKTAVDKGFADEI 171 >ref|NP_116498.1|putative ATP-dependent ClpP protein Length = 237 Score = 58.9 bits (141), Expect = 4e-08 Identities = 35/133 (26%), Positives = 67/133 (50%) Frame = -1 Query: 17851 DKDIYLYINSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATP 17672 D+++ L I S GG V + IY ++ ++V G+AAS + +G +P Sbjct: 44 DEEVILNIASNGGDVFSASEIYTKLKNSNKNIVVNIEGIAASAASVIAMAGDTVN--ISP 101 Query: 17671 NARILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTADQTGQTVETILKDNDRDKWFT 17492 A++++H+ G G A D + +A+++ + + +A +TG +L+ + W T Sbjct: 102 TAQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDLLQLMSNETWMT 161 Query: 17491 APEALEYGFFDKI 17453 A +A++ GF D I Sbjct: 162 AQDAVDKGFADNI 174 >ref|NP_049395.1|putative scaffolding protein Length = 222 Score = 57.8 bits (138), Expect = 1e-07 Identities = 38/133 (28%), Positives = 67/133 (50%) Frame = -1 Query: 17851 DKDIYLYINSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATP 17672 D++I L I S GG V A IY ++ +V GLAAS + +G + +P Sbjct: 41 DEEITLNIASNGGDVFAASEIYTMLRDSGKRIVVNIQGLAASAASVISMAGNTVR--ISP 98 Query: 17671 NARILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTADQTGQTVETILKDNDRDKWFT 17492 A I++H+ S G G + D++ Q+ ++ + + +A +TG +L+ ++ W Sbjct: 99 TAHIMIHKASSGFVGNSDDMEHQSVVLNSIDESIALAYEMKTGLKQSELLELMAKETWLN 158 Query: 17491 APEALEYGFFDKI 17453 A A++ GF D+I Sbjct: 159 AKTAVDKGFADEI 171 >ref|NP_061501.1|ClpP protease Length = 296 Score = 57.8 bits (138), Expect = 1e-07 Identities = 37/131 (28%), Positives = 66/131 (50%) Frame = -1 Query: 17851 DKDIYLYINSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATP 17672 D D+ + INSPGG V G+AIY+ ++ V GLAAS F+ +G + + Sbjct: 77 DVDVTVNINSPGGDVFEGLAIYNLLREHKGKVTVNIIGLAASAASFIAMAGDEIR--IGR 134 Query: 17671 NARILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTADQTGQTVETILKDNDRDKWFT 17492 A +++H G +D++ A+ + +A++ A +T ++ I+K D + W Sbjct: 135 AAFLMIHNAWLIAMGNRNDLREIADWLEPFDMTLADIYAQRTEIDIDDIVKQMDAETWIG 194 Query: 17491 APEALEYGFFD 17459 EA++ G+ D Sbjct: 195 GREAVDKGWAD 205 >ref|NP_075503.1|protease Length = 257 Score = 57.4 bits (137), Expect = 1e-07 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 1/192 (0%) Frame = -1 Query: 18025 MSQQAGAPRMATVDPAAQDNYIYNRLLKERIIWLGSEVRDENANAICSQLLLLSAENPDK 17846 MS +A +M + + +IY ++ ++ W S+V + +L +S Sbjct: 1 MSMKAKYFQMKRKSKSKGEIFIYGDIVSDK--WFESDVTATDFKNKLDELGDIS------ 52 Query: 17845 DIYLYINSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATPNA 17666 +I ++INS GGSV G AIY+ ++ P + LAAS+ + SG + N+ Sbjct: 53 EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSG--DTIFMHKNS 110 Query: 17665 RILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTADQTGQTVETILKDN-DRDKWFTA 17489 +++H G A +++ A+L+ V D+ + LK D + W TA Sbjct: 111 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTA 170 Query: 17488 PEALEYGFFDKI 17453 EAL +G D+I Sbjct: 171 EEALSFGLIDEI 182 >ref|NP_803338.1|scaffolding protease Length = 257 Score = 57.4 bits (137), Expect = 1e-07 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 1/192 (0%) Frame = -1 Query: 18025 MSQQAGAPRMATVDPAAQDNYIYNRLLKERIIWLGSEVRDENANAICSQLLLLSAENPDK 17846 MS +A +M + + +IY ++ ++ W S+V + +L +S Sbjct: 1 MSMKAKYFQMKRKSKSKGEIFIYGDIVSDK--WFESDVTATDFKNKLDELGDIS------ 52 Query: 17845 DIYLYINSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATPNA 17666 +I ++INS GGSV G AIY+ ++ P + LAAS+ + SG + N+ Sbjct: 53 EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSG--DTIFMHKNS 110 Query: 17665 RILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTADQTGQTVETILKDN-DRDKWFTA 17489 +++H G A +++ A+L+ V D+ + LK D + W TA Sbjct: 111 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTA 170 Query: 17488 PEALEYGFFDKI 17453 EAL +G D+I Sbjct: 171 EEALSFGLIDEI 182 >ref|NP_795465.1|putative ClpP protease ATP-dependent protease proteolytic subunit Length = 221 Score = 56.6 bits (135), Expect = 2e-07 Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 1/148 (0%) Frame = -1 Query: 17893 AICSQLLLLSAENPDKDIYLYINSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQF 17714 A+ ++ ++ + DI L +NS GG VT G IY ++ V TG+AAS Sbjct: 27 AVSAKSIIEKLPEDNSDIVLEVNSNGGLVTVGSEIYTALRNYKGKVTAEITGMAASAASV 86 Query: 17713 LLSSGTKGKRYATPNARILMHQP-SGGIGGTASDIKIQAELILHMKKVMAELTADQTGQT 17537 + K +P A++++H+ + G + D+ + + K + +TG++ Sbjct: 87 AVMGA--DKVVMSPTAQMMVHKALFNWVAGNSDDLDKASNALKSSDKAIVNAYVAKTGKS 144 Query: 17536 VETILKDNDRDKWFTAPEALEYGFFDKI 17453 + I+ + + +A EA+E GF D++ Sbjct: 145 EDEIMDLMRNETFMSAQEAVENGFADEV 172 >ref|NP_049970.1|Predicted clp-protease Length = 224 Score = 53.5 bits (127), Expect = 2e-06 Identities = 36/137 (26%), Positives = 67/137 (48%) Frame = -1 Query: 17863 AENPDKDIYLYINSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQFLLSSGTKGKR 17684 A + ++I L I S GG V A IY ++ +V GLAAS + + + Sbjct: 40 ANDEGEEITLNIASNGGDVFAASEIYTMLKSCGKRIVANVQGLAASAASVISMAADTVR- 98 Query: 17683 YATPNARILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTADQTGQTVETILKDNDRD 17504 +P A +++H+ S G+ G + D++ Q+ ++ + + +A +TG +L ++ Sbjct: 99 -ISPTAHMMIHKASSGLVGNSDDMEHQSVVLNSIDESIALAYEMKTGLKQTELLDLMAKE 157 Query: 17503 KWFTAPEALEYGFFDKI 17453 W A A++ GF D+I Sbjct: 158 TWLNAKTAVDKGFADEI 174 >ref|YP_025030.1|putative ClpP-like protease Length = 228 Score = 47.8 bits (112), Expect = 1e-04 Identities = 29/130 (22%), Positives = 57/130 (43%) Frame = -1 Query: 17845 DIYLYINSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATPNA 17666 D+ L I S GG V I + ++ +V A S + K + P A Sbjct: 42 DVTLEITSNGGEVDPATEICNALRSYQGNVTAKVMSNAYSAASIVAMGANKVQM--APGA 99 Query: 17665 RILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTADQTGQTVETILKDNDRDKWFTAP 17486 ++++H+ S G + ++ + ++ +A L + +TG+ + L D++ W A Sbjct: 100 KMMIHRASSDASGNSHEMDAASGMLQTTDSAIASLYSAKTGKPADDFLALMDKETWLDAD 159 Query: 17485 EALEYGFFDK 17456 +A+E G D+ Sbjct: 160 QAIELGLADE 169 >ref|NP_818463.1|gp163 Length = 236 Score = 47.4 bits (111), Expect = 1e-04 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 9/164 (5%) Frame = -1 Query: 17917 EVRDENANAICSQLLLLSAENPDKDIYLYINSPGGSVTAGM-AIYDTMQFIP-----NDV 17756 EV D++ A+ + ++P+ L ++SPGG +G AI +++ + + Sbjct: 74 EVDDDSIFALMDTVNAWHRQDPESKWNLIVDSPGGYCNSGFHAIDQLIEYSAWGGGSHYI 133 Query: 17755 VTVATGLAASMGQFLLSSGTKGKRYATPNARILMHQPSGGIGGTASDIKIQAELILHMKK 17576 G+AASMG +L + + R NA+IL+H S G+ G ++ I + Sbjct: 134 TMTVRGMAASMGGIILQAADE--RVMGRNAQILIHPISSGLYGGRGELHDYMGRIEMLTA 191 Query: 17575 VMAELTADQTGQTVETILKDND---RDKWFTAPEALEYGFFDKI 17453 +L + G+ + N ++ W A EALEY D+I Sbjct: 192 QAEKLFKHRAGKKLPRKKLKNALMYKNWWIGAEEALEYALVDRI 235 >ref|NP_944246.1|putative single-strand DNA binding protein Length = 169 Score = 47.0 bits (110), Expect = 2e-04 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Frame = -2 Query: 33582 PGGVPTASFRLGSTDRRYDRASSTWVDGNTNWFTVQGYRQLAGNMGCSIKKGQRVIIVGR 33403 P G A+ RL +TDR D+AS + T W V + +LA + ++KG V I GR Sbjct: 23 PSGDAVANIRLATTDRYKDKASGD-IKEATEWHRVSFFGRLAEIVDEHLRKGASVYIEGR 81 Query: 33402 LKMRSW-EKDGRIYHAAEIDAE 33340 +K R W ++ G+ + EI A+ Sbjct: 82 IKTRKWQDQSGQDRYTTEIVAD 103 >ref|NP_817947.1|gp96 Length = 566 Score = 44.7 bits (104), Expect = 9e-04 Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 11/135 (8%) Frame = -3 Query: 16124 LLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAADYDVKK 15945 +LIG +GCGKT Q L N P D AL + YVGE E+ L + D Sbjct: 317 MLIGVSGCGKTLSCQALGAEWNWPVVRLDINAL-KGKYVGES-ESRLRGIFSKID----A 370 Query: 15944 AEQGIIYIDEIDKISRKSENPSITRDVSGEGV-----------QQALLKILEGTVASVPP 15798 Q I+YIDE++K + + S VS + + QA + + + +PP Sbjct: 371 LGQVIVYIDEVEKALEGAVSGSADGGVSADALGAILTWMQDRAGQAFVMMTANDPSKLPP 430 Query: 15797 QGGRKHPHQEFIQID 15753 + RK E ID Sbjct: 431 EFLRKGRFDEVWWID 445 >ref|YP_164279.1|single-stranded DNA-binding protein Length = 167 Score = 44.3 bits (103), Expect = 0.001 Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 1/127 (0%) Frame = -2 Query: 33636 DNITVRGFVATEIKSSTTPGGVPTASFRLGSTDRRYDRASSTWVDGNTNWFTVQGYRQLA 33457 + + + G + + + +TPGG S L +++ D+ + + T W V + +LA Sbjct: 6 NKVILVGHLGQDPDARSTPGGKAVTSLSLATSESWKDKQTGQQQE-RTEWHRVVLFGRLA 64 Query: 33456 GNMGCSIKKGQRVIIVGRLKMRSWE-KDGRIYHAAEIDAESVGHDLMWGSANFTRTAGNS 33280 ++KG +V I G L+ R W+ +DG+ +++ E+ + G+ + G AG + Sbjct: 65 EIAAQYLRKGSQVYIEGSLRTRKWQGQDGQDHYSTEVVVDINGNMQLLGGK--PEQAGQA 122 Query: 33279 AHSGPAQ 33259 GP + Sbjct: 123 RGPGPGR 129 >ref|NP_899255.1|ClpP Length = 239 Score = 43.5 bits (101), Expect = 0.002 Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 9/153 (5%) Frame = -1 Query: 17905 ENANAICSQLLLLSAENPDKDIYLYINSPGGSVTAGMAIYDT-MQFIPNDVVTVATGLAA 17729 E N L +L + +YL++N+PGG+ A I D MQ V+ A G Sbjct: 27 EEPNDYEEMLQILHTASETDLVYLHLNTPGGNFAAACQICDAIMQSKAGAVIACAEGEVC 86 Query: 17728 SMGQ--FLLSSGTKGKRYATPNARILMHQPSGGIGGTASDIKIQAEL-ILHMKKVMAEL- 17561 S G FL +G + +P A + H SGG G D QA+ H+ +V L Sbjct: 87 SAGTMIFLACNGW----HVSPFATFMFHTSSGGQIGKMPDTLKQAKAHEEHLNRVCGLLY 142 Query: 17560 ----TADQTGQTVETILKDNDRDKWFTAPEALE 17474 AD+ + + ++++D W T E E Sbjct: 143 EPFFDADEIDEII-----NHNQDLWLTPDEVTE 170 >ref|NP_510985.1|Clp protease Length = 248 Score = 39.7 bits (91), Expect = 0.028 Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 3/181 (1%) Frame = -1 Query: 17986 DPAAQDNYIYNRLLKERIIWLGSEVRDENANAICSQLLLLSAENPDKDIYLYINSPGGSV 17807 +P D Y+Y + GS D+ ++ L S+ + I +++NS GG V Sbjct: 21 NPEIADLYLYGSI--------GSGWFDDITSSEVQNFLKTSSVS---QINVHVNSGGGDV 69 Query: 17806 TAGMAIYDTMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATPNARILMHQPSGGIGG 17627 +AI++ ++ P + LA S + +G + NA +++H+ G Sbjct: 70 FESIAIHNLLKAHPAKISIYIDALAGSGASVIAMAG--DEIIMPSNAMMMIHKAWTIAAG 127 Query: 17626 TASDIKIQAELILHMKKVMAELTADQTGQTV---ETILKDNDRDKWFTAPEALEYGFFDK 17456 A + + A M K+ +T T + V E ++ ++W TA E + GF D Sbjct: 128 NADEFRKVAN---DMDKIDHAVTESYTERFVGEREELVTLLTNEEWLTAEECVTLGFCDS 184 Query: 17455 I 17453 I Sbjct: 185 I 185 >ref|YP_024843.1|Pas57 Length = 305 Score = 39.3 bits (90), Expect = 0.036 Identities = 34/118 (28%), Positives = 51/118 (43%) Frame = -2 Query: 45240 PPEPAGAARASSLSPARVTPSNAAVESKIRVAFSVQASGRKLPVASANPATSPVASADGV 45061 PP + +A AS+ + A + S +A S + S AS +SA+P+T+ AS Sbjct: 190 PPSTSTSASASASTSASASASTSASAS---TSASASASTSASASSSASPSTTGSAS---- 242 Query: 45060 FETAKTVPDVPSDTTTSPGRASTPRAAAALSPAPGPMIAPAGVVPAASSEPATAGRTG 44887 P + TT +PG +TP A + P+ P G+V A A G G Sbjct: 243 -------PSTTTSTTAAPGITTTPVAGGG---SDLPVTGPGGIVMLAGGALAVIGTGG 290 >ref|NP_817990.1|gp17 Length = 1183 Score = 35.8 bits (81), Expect = 0.40 Identities = 32/126 (25%), Positives = 44/126 (34%) Frame = -2 Query: 45231 PAGAARASSLSPARVTPSNAAVESKIRVAFSVQASGRKLPVASANPATSPVASADGVFET 45052 P GA R S P AA+ + ++ A A P +A G Sbjct: 1009 PFGAPRWLSTDVTAFLPQGAAMPAATTTGEQMEQQA-----AGAQP------TAAGQQPV 1057 Query: 45051 AKTVPDVPSDTTTSPGRASTPRAAAALSPAPGPMIAPAGVVPAASSEPATAGRTGTWPSI 44872 + P +P +P P A P PGP A+S+P T +T W +I Sbjct: 1058 GQQPPPMPHQGNGAPPGPGAPTPALPAGPPPGPQ---------AASQPVTPEQTDWWRNI 1108 Query: 44871 FSRSSG 44854 FS G Sbjct: 1109 FSFDQG 1114 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 230,761,880 Number of Sequences: 14420 Number of extensions: 4934698 Number of successful extensions: 18856 Number of sequences better than 0.5: 26 Number of HSP's better than 0.5 without gapping: 7104 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 18763 length of database: 3,019,461 effective HSP length: 116 effective length of database: 1,346,741 effective search space used: 21677143136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig21 (39,290 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818239.1|gp188 47 1e-04 ref|NP_620626.1|putative transposase 45 4e-04 ref|YP_025041.1|putative transposase B 40 0.023 ref|NP_705643.1|gp17 39 0.039 ref|NP_958122.1|gp17 39 0.039 ref|NP_542342.1|unknown 38 0.066 ref|NP_852574.1|Collagen triple helix repeat protein 38 0.066 ref|NP_958267.1|hypothetical protein 38 0.086 ref|NP_612899.1|hypothetical protein 37 0.15 ref|NP_944342.1|gp33 36 0.25 ref|NP_944326.1|gp18 36 0.33 ref|NP_859265.1|hypothetical protein 35 0.43 ref|NP_859099.1|hypothetical protein 35 0.43 ref|NP_050557.1|hypothetical protein 35 0.43 ref|NP_049519.1|putative tail fiber protein 35 0.43 >ref|NP_818239.1|gp188 Length = 318 Score = 47.4 bits (111), Expect = 1e-04 Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 6/188 (3%) Frame = -1 Query: 15734 EATTKAGALLILDEVQTGIGRTGKWLASEDAGIVPDAVTLAKGLGGGFPIGALITFGPET 15555 + TK+G ++ DE TG GR G+ + G PDA+ GGG +G +I GP Sbjct: 130 DRATKSGRTVVADESATGFGRLGRIWGHQAYGFTPDAIIFGGPAGGGLTLGGVI--GP-- 185 Query: 15554 SSLLTAGQHGTTFGGNPVXXXXXXXXXXAIESQRVLDNVRAVGEHLRSKLAAV-----DG 15390 + LL G G P+ AI + +L++VR G +L A+ D Sbjct: 186 AELLDDAFVG-PMAGAPLACATGAATLAAINPE-LLEHVREEGVTFGERLRALVDRFGDY 243 Query: 15389 VTEVRGEGLLIGFDL-DADIAPAVVTAGLDAGFIVNSPGPRTIRLAPPLILTAAQADSFI 15213 + + G GL D +A + G + P T+ + P LI + + + Sbjct: 244 LADTAGSGLYHTLDFRSPQLARKFEVSTRQHGLLTAPPVGSTVVVTPTLIASERELARGV 303 Query: 15212 QALPTLLQ 15189 + + L+ Sbjct: 304 ELIAETLE 311 >ref|NP_620626.1|putative transposase Length = 362 Score = 45.4 bits (106), Expect = 4e-04 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 17/156 (10%) Frame = -2 Query: 5377 YLHHAVDDHSRLA----YSEILTDEKKETXXXXXXXXXXXXXAHGITVRAVLTDNGACY- 5213 Y++ +D+ +RLA Y ++ TD + GI + + TDNG+ + Sbjct: 206 YVYDFIDEKTRLALGYVYDKLSTDNAIDAVKKAISDFKNIF---GIIITRIRTDNGSEFI 262 Query: 5212 -----------RSRAFTAAL-GPNIKHRRTRPYRPQTNGKVERFNRTLNTEWAYARPYTS 5069 + FT L NI H+ T PQ+NGK+ERF++ + + + Sbjct: 263 NNYRNNQKISVKKTNFTQFLTDKNILHQTTPVRSPQSNGKIERFHQNYTKLFVFEEKILN 322 Query: 5068 EAERAATYPGWLHQYNHHRTHTGIGGKTPISRVHNL 4961 + + YN R H + +TP + +++L Sbjct: 323 AVSLQNKLNDYYYFYNFERVHKSLNFQTPFNFLNSL 358 >ref|YP_025041.1|putative transposase B Length = 280 Score = 39.7 bits (91), Expect = 0.023 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Frame = -2 Query: 5233 TDNGACYRSRAFTAALGP-NIKHRRTRPYRPQTNGKVERFNRTLNTEWAYARPYTSEAER 5057 TD G+ Y S + L +I+H +R P N +E F+ +L E Y P + E Sbjct: 180 TDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYET 239 Query: 5056 AATYP-GWLHQ-YNHHRTHTGIGGKTPI 4979 AA ++H YN R H+ +G +TP+ Sbjct: 240 AAAVLFEYVHAFYNRKRIHSSLGYQTPL 267 >ref|NP_705643.1|gp17 Length = 695 Score = 38.9 bits (89), Expect = 0.039 Identities = 18/30 (60%), Positives = 19/30 (63%) Frame = -2 Query: 35524 AGMWEFPGGKVEPRETAEDALHRELREELG 35435 AG W P GKVE ET E+A RE REE G Sbjct: 595 AGDWGLPAGKVEGNETPEEAARRETREETG 624 >ref|NP_958122.1|gp17 Length = 694 Score = 38.9 bits (89), Expect = 0.039 Identities = 18/30 (60%), Positives = 19/30 (63%) Frame = -2 Query: 35524 AGMWEFPGGKVEPRETAEDALHRELREELG 35435 AG W P GKVE ET E+A RE REE G Sbjct: 594 AGDWGLPAGKVEGNETPEEAARRETREETG 623 >ref|NP_542342.1|unknown Length = 164 Score = 38.1 bits (87), Expect = 0.066 Identities = 37/127 (29%), Positives = 51/127 (40%), Gaps = 5/127 (3%) Frame = -1 Query: 14510 RKLSRGPTSSPRTPGCPWDRRPKRKPGSSCSATIPLMKQRCSSRRRTPSCFTACRRTGAM 14331 R +R S+P PW RR + P S S L R SS R+ R T A Sbjct: 25 RDCARSSRSAPTGRSAPWSRRSPKSPRPSASR---LANPRWSSLARSFPFSPPTRNTSAA 81 Query: 14330 RSPQESSTVPSRSSGTRRKTASTPRRR*WRGSC-----TGRAWPSSTVSRPLKEPGRARS 14166 P++ S S + + RKTA++P R SC R S+ GR R Sbjct: 82 LWPRDRSC--SSMAPSIRKTAASPIARSAATSCIRPCFANRRGRSNDRDHQGSNRGRKRH 139 Query: 14165 SVHQPVG 14145 + +P+G Sbjct: 140 ILEKPLG 146 Score = 36.2 bits (82), Expect = 0.25 Identities = 35/133 (26%), Positives = 48/133 (36%), Gaps = 10/133 (7%) Frame = -2 Query: 10078 WPAFRMPWPGNLSSPAAVRQLNFMTAALKAAPKPSKCP-----PGTPWSNTGRMWILRWS 9914 W + MP P SSP + + + ++AP P P +P + R+ RWS Sbjct: 4 WATWMMPTPTTCSSPLPISRTRDCARSSRSAPTGRSAPWSRRSPKSPRPSASRLANPRWS 63 Query: 9913 A-----PFGPSIHWMPAAGRCRSPTAGEWCWTVAWPYGGSS*SMPRT*IPDVARNPGAGP 9749 + PF P AA WP S SM P + R A P Sbjct: 64 SLARSFPFSPPTRNTSAA---------------LWPRDRSCSSM----APSI-RKTAASP 103 Query: 9748 SASTCSISCQRVC 9710 A + + SC R C Sbjct: 104 IARSAATSCIRPC 116 >ref|NP_852574.1|Collagen triple helix repeat protein Length = 536 Score = 38.1 bits (87), Expect = 0.066 Identities = 36/109 (33%), Positives = 44/109 (40%), Gaps = 2/109 (1%) Frame = -3 Query: 5355 TIPAWPTPKYSPTKRRKPPQRSG-SAPHRSSPPTASLSEPCSPITALATAPEPSQPPWAR 5179 T+P PT PT P +G + P S+ PT T L P+ P Sbjct: 26 TLPTGPTGSTGPTG---PTGSTGPTGPTGSTGPTGPTGS-----TGLTGLTGPTGP---- 73 Query: 5178 TSSTAGLGPTGHRPMAR*NASTGPSTRNGPTPGPTHQK-PSEQPPTPVG 5035 T T GPTG TGP++ GPT GPT PS+ P P G Sbjct: 74 TGPTGPTGPTGPTGSTGLTGPTGPNSDTGPT-GPTGPTGPSDGPTGPTG 121 Score = 37.7 bits (86), Expect = 0.086 Identities = 26/69 (37%), Positives = 27/69 (39%) Frame = -3 Query: 5241 PCSPITALATAPEPSQPPWARTSSTAGLGPTGHRPMAR*NASTGPSTRNGPTPGPTHQKP 5062 P P L T P S P T ST GPTG STG + GPT GPT Sbjct: 20 PAIPPFTLPTGPTGSTGPTGPTGSTGPTGPTGSTGPTGPTGSTGLTGLTGPT-GPTGPTG 78 Query: 5061 SEQPPTPVG 5035 P P G Sbjct: 79 PTGPTGPTG 87 Score = 37.0 bits (84), Expect = 0.15 Identities = 32/103 (31%), Positives = 39/103 (37%), Gaps = 8/103 (7%) Frame = -3 Query: 5358 MTIPAWPTPKYSPTKRRKPPQRSG----SAPHRSSPPTASLSE--PCSPITALATAPEPS 5197 +T P PT PT P +G + P+ + PT P T A P+ Sbjct: 67 LTGPTGPTGPTGPTGPTGPTGSTGLTGPTGPNSDTGPTGPTGPTGPSDGPTGPTGATGPT 126 Query: 5196 QPPWARTSSTAGLGPTGHRPMAR*NASTGPSTRNGPT--PGPT 5074 PP T T G TG STGP+ GPT GPT Sbjct: 127 GPPDGPTGDTGPTGSTGPTGDTGPTGSTGPTGDTGPTGSTGPT 169 Score = 36.2 bits (82), Expect = 0.25 Identities = 34/104 (32%), Positives = 37/104 (35%), Gaps = 2/104 (1%) Frame = -3 Query: 5349 PAWPTPKYSPTKRRKPPQRSGSAPHRSSPPTASLSEPCSPITALATAPEPSQPPWARTSS 5170 P PT PT P + P S+ PT S T P S P T Sbjct: 116 PTGPTGATGPTGPPDGPT-GDTGPTGSTGPTGDTGPTGSTGPTGDTGPTGSTGPTGDTGP 174 Query: 5169 TAGLGPTGHRPMAR*NASTGPSTRNGPT--PGPTHQKPSEQPPT 5044 T GPTG STGP+ GPT GPT E PT Sbjct: 175 TGSTGPTGDTGPT---GSTGPTGDTGPTGSTGPTGPGCIEPLPT 215 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 37.7 bits (86), Expect = 0.086 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Frame = +3 Query: 8391 DRPADHGRGRPDRP------HPALRLRKREPGAGGRPAPSLPHCGPDRRPGIRPAARSAA 8552 DR DH PD P PA R+ P A RP P C PD P + PAA A Sbjct: 46 DRSPDHPE--PDHPCRRAPSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCA 103 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 37.0 bits (84), Expect = 0.15 Identities = 37/112 (33%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Frame = -3 Query: 11268 GVAGTPGLRAGHGHRRMAGPPRGSVPRGARTLRRGREA--GGKPRRGTLGPDG----RGI 11107 G G PGL+ G R G P+G + G G K RG GP G RG Sbjct: 304 GPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQGPKGERGEAGPQGPMGARGE 363 Query: 11106 RRHLGAPDAGGPHGPVH*RFAQQPQLP----GRDGTCRRRAPAHRAGSRAGR 10963 R G GP GP R PQ P G G R AG R R Sbjct: 364 RGDTGPRGEPGPAGPRGERGETGPQGPMGARGERGETGPRGEPGPAGPRGER 415 >ref|NP_944342.1|gp33 Length = 472 Score = 36.2 bits (82), Expect = 0.25 Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 14/95 (14%) Frame = +1 Query: 5539 AGRCLGPGRPAGASGTGSGPFPRSSGQGAGGLRSGEDPTGG*NAAPESA----------V 5688 AG G G PAG G +GP G GA G G +P GG A + Sbjct: 375 AGGNGGAGAPAGGYGQDTGP----QGVGASGGAGGSNPFGGGGTAVRGSQIGNTMLAGLA 430 Query: 5689 RCGHQCG----SGFDAAARTSQPCRPRHGPGTGPP 5781 G+ CG G AA T+ P + G G P Sbjct: 431 ATGYGCGGGGCGGVYAAGNTTIPTSTGNSGGAGTP 465 >ref|NP_944326.1|gp18 Length = 698 Score = 35.8 bits (81), Expect = 0.33 Identities = 17/30 (56%), Positives = 18/30 (60%) Frame = -2 Query: 35524 AGMWEFPGGKVEPRETAEDALHRELREELG 35435 AG W P GKVE ET E+A RE EE G Sbjct: 598 AGDWGLPAGKVEDGETPEEAARRETLEETG 627 >ref|NP_859265.1|hypothetical protein Length = 645 Score = 35.4 bits (80), Expect = 0.43 Identities = 30/87 (34%), Positives = 33/87 (37%), Gaps = 6/87 (6%) Frame = -3 Query: 11268 GVAGTPGLRAGHGHRRMAGPPRGSVPRGARTLRRGREA--GGKPRRGTLGPDG----RGI 11107 G G PGL+ G R G P+G + G G K RG GP G RG Sbjct: 304 GPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQGPKGERGEAGPQGPMGARGE 363 Query: 11106 RRHLGAPDAGGPHGPVH*RFAQQPQLP 11026 R G GP GP R PQ P Sbjct: 364 RGETGPRGEPGPAGPRGERGETGPQGP 390 >ref|NP_859099.1|hypothetical protein Length = 645 Score = 35.4 bits (80), Expect = 0.43 Identities = 30/87 (34%), Positives = 33/87 (37%), Gaps = 6/87 (6%) Frame = -3 Query: 11268 GVAGTPGLRAGHGHRRMAGPPRGSVPRGARTLRRGREA--GGKPRRGTLGPDG----RGI 11107 G G PGL+ G R G P+G + G G K RG GP G RG Sbjct: 304 GPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQGPKGERGEAGPQGPMGARGE 363 Query: 11106 RRHLGAPDAGGPHGPVH*RFAQQPQLP 11026 R G GP GP R PQ P Sbjct: 364 RGETGPRGEPGPAGPRGERGETGPQGP 390 >ref|NP_050557.1|hypothetical protein Length = 645 Score = 35.4 bits (80), Expect = 0.43 Identities = 30/87 (34%), Positives = 33/87 (37%), Gaps = 6/87 (6%) Frame = -3 Query: 11268 GVAGTPGLRAGHGHRRMAGPPRGSVPRGARTLRRGREA--GGKPRRGTLGPDG----RGI 11107 G G PGL+ G R G P+G + G G K RG GP G RG Sbjct: 304 GPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQGPKGERGEAGPQGPMGARGE 363 Query: 11106 RRHLGAPDAGGPHGPVH*RFAQQPQLP 11026 R G GP GP R PQ P Sbjct: 364 RGETGPRGEPGPAGPRGERGETGPQGP 390 >ref|NP_049519.1|putative tail fiber protein Length = 645 Score = 35.4 bits (80), Expect = 0.43 Identities = 30/87 (34%), Positives = 33/87 (37%), Gaps = 6/87 (6%) Frame = -3 Query: 11268 GVAGTPGLRAGHGHRRMAGPPRGSVPRGARTLRRGREA--GGKPRRGTLGPDG----RGI 11107 G G PGL+ G R G P+G + G G K RG GP G RG Sbjct: 304 GPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQGPKGERGEAGPQGPMGARGE 363 Query: 11106 RRHLGAPDAGGPHGPVH*RFAQQPQLP 11026 R G GP GP R PQ P Sbjct: 364 RGETGPRGEPGPAGPRGERGETGPQGP 390 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 186,948,830 Number of Sequences: 14420 Number of extensions: 4028897 Number of successful extensions: 15266 Number of sequences better than 0.5: 15 Number of HSP's better than 0.5 without gapping: 6234 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 15186 length of database: 3,019,461 effective HSP length: 115 effective length of database: 1,361,161 effective search space used: 17669230941 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig22 (29,457 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818228.1|gp169 92 4e-18 ref|NP_817998.1|gp25 81 5e-15 ref|NP_818340.1|gp39 77 1e-13 ref|NP_817358.1|gp20 74 8e-13 ref|NP_817477.1|gp27 67 1e-10 ref|NP_203461.1|hypothetical protein 42 0.005 ref|NP_542342.1|unknown 41 0.008 ref|NP_958267.1|hypothetical protein 36 0.19 ref|NP_542287.1|unknown 35 0.33 >ref|NP_818228.1|gp169 Length = 358 Score = 91.7 bits (226), Expect = 4e-18 Identities = 75/305 (24%), Positives = 146/305 (47%), Gaps = 16/305 (5%) Frame = +2 Query: 13865 EMLDDGAPAVLMQAKVRGGEWARASGVRSLEGREPVESADQVHIAGVTESFVAVSVFKLV 14044 EM P ++++ G++ G+R++ +P+ + A VT++ A+++ + V Sbjct: 19 EMAVTKQPGMMLKITGPAGDYELTRGLRTVAPDKPMSFDAKFRAASVTKTLTAMAILREV 78 Query: 14045 AEGRLGLEDDVSKHLPDFGAIMHPPG-PVTVRQLLQHRSGMPDYIIPLLQQGSLRDVLAT 14221 +G++ L+D V K++ P G +TV+Q+L RSG+ +Y ++ + T Sbjct: 79 DKGKISLDDVVDKYVAQI-----PNGRQLTVKQVLMMRSGLAEYQTDIIIALTFL-AFPT 132 Query: 14222 GRSHRELLALAATQPWKGRLAQG--FEHSNTNYVVLGMIVERLRGHRIGD-VLRSDIIEP 14392 + A+ A + K G + + +NY +L +I+E++ G + +L D+++P Sbjct: 133 WPTFSPEGAMQAVRRNKAVFKPGAQYMYCGSNYHLLALILEKVNGGKGWKRILMDDLVKP 192 Query: 14393 LGLRSTSMTGSGPAPPSLVHGYVT-TFGERLDASYAALHAGDPAGGLVSTVSDLNVFFAA 14569 LG+ STS P V GY T F + + + PAGG+V+T+ D++ + A Sbjct: 193 LGMTSTSFPDGATIPQPEVKGYTTGVFKKWSENGKVNANFHGPAGGMVTTMGDMHKWATA 252 Query: 14570 LLQG-------RLIPRALVTEM----QDPPYAQYGLGIQRWNDTCTNNFYYGHAGQIAGY 14716 + G R + +L + + + P YG+G+ + ++GH G I GY Sbjct: 253 MRDGVFLKPETRQLQHSLFSSVPWTDEGPTAFGYGMGLLSFGK------WFGHDGWIPGY 306 Query: 14717 GAISM 14731 G ++M Sbjct: 307 GTVAM 311 >ref|NP_817998.1|gp25 Length = 941 Score = 81.3 bits (199), Expect = 5e-15 Identities = 91/341 (26%), Positives = 149/341 (43%), Gaps = 35/341 (10%) Frame = +2 Query: 13799 TAAPEPPSSLARLAAELEEFGNEMLDDGA-PAVLMQAKVRGGEWARASGVRSLEGREPVE 13975 T +P PS L A++++ + + DGA P V + G++ + G+ + P+ Sbjct: 68 TESPMDPS----LTAQIDQIVAQGMADGAGPGVGLYITSPHGQYLQTYGIST--AGVPLT 121 Query: 13976 SADQVHIAGVTESFVAVSVFKLVAEGRLGLEDDVSKH-LPDFG-AIMHPPGPVTVRQLLQ 14149 I T+ F A +V + +G L LED + + P+F + + + +R L+ Sbjct: 122 PDMHFRIGSATKPFTATAVLMAIQDGLLSLEDTIDQFDTPEFKLSDIDQADKIKIRHLMM 181 Query: 14150 HRSGMPD--------YIIPLLQQGSLRD-----VLATGRSHRELLALAATQPWKGRLAQG 14290 RSG+ + L+ + L D +L + +S RE G Sbjct: 182 MRSGVFNEQRDLSFMLNFALMPKSELSDSAWFRILTSHKSVREP-------------GTG 228 Query: 14291 FEHSNTNYVVLGMIVERLRGHRIGDVLRSDIIEPLGLRSTS--MTGSGPAPPSLVH---- 14452 FE+ N N+ ++ +++ +RG I D++ DII PLGL TS T PAP ++ H Sbjct: 229 FEYVNANWFIISLVLRAVRGRHIRDIITEDIITPLGLTETSWPATAKMPAPYAVGHDGLL 288 Query: 14453 GYVTTFGERLDASYAALHAGDP--AGGLVSTVSDLNVFFAALLQGRLIPRALVTEMQD-- 14620 G +TT H P AG LVST++DL+ + + L+ + E++D Sbjct: 289 GGITT----------ETHPTYPHCAGSLVSTLTDLHKWVGHMRDATLLTPEM-AELRDSM 337 Query: 14621 -------PPYA--QYGLGIQRWNDTCTNNFYYGHAGQIAGY 14716 PYA +YG G+ W D + GHAG GY Sbjct: 338 FCPIPSGSPYAPPEYGYGL-AWYD---YGDWKGHAGSWVGY 374 >ref|NP_818340.1|gp39 Length = 628 Score = 76.6 bits (187), Expect = 1e-13 Identities = 78/316 (24%), Positives = 131/316 (41%), Gaps = 36/316 (11%) Frame = +2 Query: 13874 DDGAPAVLMQAKVRGGEWARASGVRSLEGREPVESADQVHIAGVTESFVAVSVFKLVAEG 14053 + G P V++Q G +A+A G P+ D + T+ F A++ F+ V +G Sbjct: 93 ETGQPGVMLQITGPRGNYAKAYGTTVGGTVRPLTLDDHFRMGSSTKMFTAIAFFQAVDKG 152 Query: 14054 RLGLEDDVSKHLPDFGAIMHPPGP-VTVRQLLQHRSGMPDYIIPLLQQGSLRDVLATGRS 14230 + L+D + +++P P G +T+ +L RSG+ +Y T Sbjct: 153 LITLDDTLEQYVPGI-----PNGTAITMGHMLSMRSGIAEY---------------TAGI 192 Query: 14231 HRELLALAATQPWKGRL--------------AQGFEHSNTNYVVLGMIVERLR-GHR-IG 14362 + + L T PW G + ++N+N+ ++GM++E + HR I Sbjct: 193 NALWITLFPTWPWTGAKDFLGSMKGPSNFYPGTDYLYTNSNFALIGMVLEIVDPAHRPIK 252 Query: 14363 DVLRSDIIEPLGLRSTSMTGSGPAPPSLVHGYVTTFGERLDASYAALHAGDPAGGLVSTV 14542 + + DII+PLGL TS GP PP + + + ++ D AG L + + Sbjct: 253 QIFKEDIIDPLGLTETSWPPIGPVPPP------ASIADTFNPNFL-----DAAGALATNI 301 Query: 14543 SDLNVFFAALLQGR--LIPRA----LVTEMQDP----PYAQ---------YGLGIQRWND 14665 +D F AL L P + L T + P PYA YG GI+ + Sbjct: 302 NDYTKFAEALRDNAMGLSPESYDAWLSTFWKHPTGWDPYANGFYIPSEYYYGYGIESFGT 361 Query: 14666 TCTNNFYYGHAGQIAG 14713 ++GH G +G Sbjct: 362 ------WFGHPGLFSG 371 >ref|NP_817358.1|gp20 Length = 628 Score = 73.9 bits (180), Expect = 8e-13 Identities = 62/250 (24%), Positives = 108/250 (43%), Gaps = 17/250 (6%) Frame = +2 Query: 13874 DDGAPAVLMQAKVRGGEWARASGVRSLEGREPVESADQVHIAGVTESFVAVSVFKLVAEG 14053 + G P V++Q G +A+A G P+ D + T+ F A++ F+ V +G Sbjct: 93 ETGQPGVMLQITGPRGNYAKAYGTTVGGTVRPLTLDDHFRMGSSTKMFTAIAFFQAVDKG 152 Query: 14054 RLGLEDDVSKHLPDFGAIMHPPGP-VTVRQLLQHRSGMPDYIIPLLQQGSLRDVLATGRS 14230 + L+D + +++P P G +T+ +L RSG+ +Y T Sbjct: 153 LITLDDTLEQYVPGI-----PNGTAITMGHMLSMRSGIAEY---------------TAGI 192 Query: 14231 HRELLALAATQPWKGRL--------------AQGFEHSNTNYVVLGMIVERLR-GHR-IG 14362 + + L T PW G + ++N+N+ ++GM++E + HR I Sbjct: 193 NALWITLFPTWPWTGAKDFLSTMKGPSNFYPGTDYLYTNSNFALIGMVLEIVDPAHRPIK 252 Query: 14363 DVLRSDIIEPLGLRSTSMTGSGPAPPSLVHGYVTTFGERLDASYAALHAGDPAGGLVSTV 14542 + + DII+PLGL TS GP PP + + + ++ D AG L + + Sbjct: 253 QIFKEDIIDPLGLTETSWPPIGPVPPP------ASIADMFNPNFL-----DAAGALATNI 301 Query: 14543 SDLNVFFAAL 14572 +D F AL Sbjct: 302 NDYTKFAEAL 311 >ref|NP_817477.1|gp27 Length = 946 Score = 66.6 bits (161), Expect = 1e-10 Identities = 79/323 (24%), Positives = 133/323 (41%), Gaps = 23/323 (7%) Frame = +2 Query: 13817 PSSLARLAAELEEFGNEMLDDGAPAVLMQAKVRGGEWARASGVRSLEGREPVESADQVHI 13996 PS L + E+ G M P V + G + + G+ + P+ I Sbjct: 73 PSDLTSVIDEIVAEG--MATGAGPGVGLYVTSPQGYYLKTYGISTTG--VPLTPDMHFRI 128 Query: 13997 AGVTESFVAVSVFKLVAEGRLGLEDDVSKH-LPDFG-AIMHPPGPVTVRQLLQHRSGMPD 14170 T+ F A +V + +G + LED + + P+F + + + +R L+ RSG+ + Sbjct: 129 GSATKPFTATAVLMAIQDGLISLEDTIDQFDTPEFKLSDIDRANEIKIRHLMMMRSGVFN 188 Query: 14171 YIIPLLQQGSLRDVLATGRSHRELLALAATQPWKGRLAQGFEHSNTNYVVLGMIVERLRG 14350 L + +G S + + + FE+ N N+ ++ +I++ +RG Sbjct: 189 EQRDLTFMLNFALFPKSGFSDQSWFNVLKSHKLVRDPGTEFEYVNGNWFLISLILKAVRG 248 Query: 14351 HRIGDVLRSDIIEPLGLRSTS--MTGSGPAPPSLVH----GYVTTFGERLDASYAALHAG 14512 I +L DII PLGL TS T + PAP ++ H G +TT H Sbjct: 249 KHIRQILYDDIINPLGLTETSWPATAAMPAPYAVGHDGLLGGITT----------ETHPT 298 Query: 14513 DP--AGGLVSTVSDLNVFFAALLQGRLIPRALVTEMQD-------------PPYAQYGLG 14647 P AG +VST++DL+ + + L+ + +++D PP YGL Sbjct: 299 WPHCAGSIVSTLTDLHKWCGHMRDATLLTPEM-EQLRDSMFCPIPSGSPFAPPEYGYGLA 357 Query: 14648 IQRWNDTCTNNFYYGHAGQIAGY 14716 + D + GHAG GY Sbjct: 358 WYDYGD------WKGHAGSWVGY 374 >ref|NP_203461.1|hypothetical protein Length = 373 Score = 41.6 bits (96), Expect = 0.005 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = -1 Query: 27057 REDPASPRLDQQAPGAASARTRTSRPTAAWSISSFM--APMQSGYRVQPGCRCPVPAWLP 26884 +E PA+P + PGA A ++P+ A S ++ P QS QP R P +W P Sbjct: 56 KESPAAPTGGTEEPGATPAEAAGAKPSEAASTATAKPDEPAQSATPKQPEVRAP-QSWRP 114 Query: 26883 VARRHWLFVPPRAK 26842 R W +PP + Sbjct: 115 EVREQWAKLPPEVQ 128 >ref|NP_542342.1|unknown Length = 164 Score = 40.8 bits (94), Expect = 0.008 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%) Frame = -2 Query: 19271 PLTVGRSCA--TLSTPTS----WRTASTLNATPLSSPTAGPSWTRACCSYPASGSCRPTT 19110 P++ R CA + S PT W S + P +S A P W+ S+P S R T+ Sbjct: 20 PISRTRDCARSSRSAPTGRSAPWSRRSPKSPRPSASRLANPRWSSLARSFPFSPPTRNTS 79 Query: 19109 PGWWAPSTPCSGNSPA-TASCSGTVLRTPTTDC 19014 W CS +P+ + + + R+ T C Sbjct: 80 AALWPRDRSCSSMAPSIRKTAASPIARSAATSC 112 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 36.2 bits (82), Expect = 0.19 Identities = 23/63 (36%), Positives = 26/63 (41%) Frame = +1 Query: 24256 PSHPLRVQGSP*SQGAAPRYRRPVGDKRPQRTGAGCHPASRRAPRPVPHPSPDGSTGPAA 24435 P HP R +P A PR PV RP+ C P P P HP+ G A Sbjct: 54 PDHPCR--RAPSRPAAGPRRHPPVARTRPRTRAPECAP----DPGPAVHPAAPGCAPAAP 107 Query: 24436 AAP 24444 AAP Sbjct: 108 AAP 110 >ref|NP_542287.1|unknown Length = 224 Score = 35.4 bits (80), Expect = 0.33 Identities = 52/188 (27%), Positives = 65/188 (34%), Gaps = 31/188 (16%) Frame = -1 Query: 18297 TPPSRRCRASTTGKLSWPW*SDSEPPT*NQWTRPRAASPATCWPTT-CRNGTTSCRARRG 18121 T P RRC + T S PT +WTR + WPT+ R + + RG Sbjct: 37 TRPERRCASPTRSAAS---------PTFRRWTR-------SAWPTSRSRRLRSKISSARG 80 Query: 18120 NGSRES---------------RFPRQRPL-------APGSSRPQTWTRRPCGCGPG*TAS 18007 R S R R R L AP P TR P P + Sbjct: 81 PAQRSSKRRLPSIAAWSKHSARSQRARSLPSKSLATAPQHRIPLARTRDPIRLLPALMGA 140 Query: 18006 CAR-TRPRRISSLTSRPWCTT*ASSWCWNPVM*S-LRGHRRGWLCRGA------FPTCRT 17851 C R RPR I++ S ++ S P M + LR L A P CRT Sbjct: 141 CGRRARPRSIATSRSAMRRSSAFSMTAGAPAMSTCLRSTMTAPLSNTARPAIARAPACRT 200 Query: 17850 ATCWSWRS 17827 C WR+ Sbjct: 201 GFCRRWRT 208 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 143,027,623 Number of Sequences: 14420 Number of extensions: 3098485 Number of successful extensions: 11407 Number of sequences better than 0.5: 9 Number of HSP's better than 0.5 without gapping: 5562 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11377 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 13489959705 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig23 (36,076 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase 39 0.047 ref|NP_604422.1|Hypothetical protein 37 0.18 ref|YP_024843.1|Pas57 35 0.39 ref|YP_024839.1|Pas53 35 0.39 >ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase Length = 320 Score = 38.5 bits (88), Expect = 0.047 Identities = 39/151 (25%), Positives = 63/151 (41%) Frame = -2 Query: 18549 IFVTGGSGRLGRSVVAGLAGAGHHVISVDRDAVPAAQLPDGVEQRTADLLAPGEAERLLR 18370 I +TG +G +G ++ L V ++D + E DL + LLR Sbjct: 2 ILITGCTGFIGSQLLKRLNN-DKVVCVANKDHFSNNIVDSAAEYVFVDLTDREKVRDLLR 60 Query: 18369 ETTPDAVVHLAAIAVPFSAPEDVIFSTNTRLAYAVISAATELRIGKIVTASSPTVLGYGS 18190 + PD V++LA+ + ED F N +AY + A L + AS+ V Y Sbjct: 61 KVKPDLVINLASKTPVRLSYEDTSFMNNAIIAYNIAMAEAPL-----IHASTAEVYPYTP 115 Query: 18189 PAGWLPESFPVDEQTTPRPWNAYALSKLIAE 18097 + E E+ P + YA+SK+ +E Sbjct: 116 YPHYYKE-----EEVYRTPTSPYAVSKIASE 141 >ref|NP_604422.1|Hypothetical protein Length = 219 Score = 36.6 bits (83), Expect = 0.18 Identities = 30/86 (34%), Positives = 33/86 (38%), Gaps = 14/86 (16%) Frame = -2 Query: 29616 CSWPRTSSRVRAPWWRCPK-NRWTRCRPSAVRGR----------PTCSTWPRRW--LPPV 29476 C+ PR S R+ A W CP RW RC P R R P CS W W Sbjct: 36 CAPPR-SRRLLA--WCCPCCRRWWRCHPRHHRRRRRGCLCRVVRPGCSGWSGAWGGQASA 92 Query: 29475 WSWGW-IRSCRCCWRGKRLPEAA*CW 29401 W W W + S R W AA W Sbjct: 93 WRWLWVVASTRIGWLTDACQLAAVAW 118 >ref|YP_024843.1|Pas57 Length = 305 Score = 35.4 bits (80), Expect = 0.39 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 9/91 (9%) Frame = -1 Query: 26623 VRSLTAAPSGRSTSA---------AACTTPPRSGPAASAFTTMPPWPSKNCSTAVCSAWH 26471 V SLT AP STSA A+ +T + +ASA + S + S + + Sbjct: 183 VYSLTCAPPSTSTSASASASTSASASASTSASASTSASASASTSASASSSASPSTTGSAS 242 Query: 26470 ISTSTPTMATGRRVSSGMIRGSSPFPCTRPG 26378 ST+T T A ++ + G S P T PG Sbjct: 243 PSTTTSTTAAPGITTTPVAGGGSDLPVTGPG 273 >ref|YP_024839.1|Pas53 Length = 567 Score = 35.4 bits (80), Expect = 0.39 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 5/115 (4%) Frame = +3 Query: 10308 PLVLLCSGAGRSG-FRHPLPTHAPIGRRAMAVVCARRNGLVANVTRWVRFDAG--TPGEL 10478 PLV+L +G G++ F H + A GR ++V R+ LV + A T G + Sbjct: 26 PLVVLPTGTGKTVVFSHGIKNRADRGR---SLVLVHRDELVRQTIEKIGMVAPELTTGVV 82 Query: 10479 DAEARIAAVEADIFDATVPGARLDGIFAEIQEAYLRHGFGADQWT--LHHQGGPA 10637 A+ ++AD+ A+V A++D A++ EA R FG W HH P+ Sbjct: 83 KADEN--GLDADVVVASVQTAQVDRRLAQLVEAAKRSPFGT-VWVDEAHHAPAPS 134 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 172,754,622 Number of Sequences: 14420 Number of extensions: 3733208 Number of successful extensions: 14496 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 6055 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 14447 length of database: 3,019,461 effective HSP length: 114 effective length of database: 1,375,581 effective search space used: 16383169710 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig24 (55,311 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 169 3e-41 ref|NP_543070.1|putative replication protein DnaC 47 2e-04 ref|NP_061611.1|orf 21 44 0.001 ref|NP_542287.1|unknown 43 0.004 ref|NP_075485.1|hypothetical protein 42 0.006 ref|NP_803371.1|dnaC 42 0.006 ref|NP_958645.1|77ORF013 42 0.006 ref|NP_510917.1|similar to Escherichia coli DnaC 41 0.011 ref|NP_665958.1|putative glutaminase 39 0.053 ref|NP_775212.1|hypothetical protein 37 0.20 ref|NP_038305.1|ORF5 36 0.34 >ref|NP_945090.1|gp59 Length = 429 Score = 169 bits (428), Expect = 3e-41 Identities = 113/381 (29%), Positives = 183/381 (48%), Gaps = 8/381 (2%) Frame = -2 Query: 33683 RKSLLATGVGNLLEWFDWTIYTVASVYLAGSLFNSGNPMSSLLSTLAVFAVGFLMRPIGG 33504 R++++A VGN EWFD+ Y+ SV +A F S + SLL +++ VGF MRPIGG Sbjct: 20 RRAVIAVIVGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLLSVSTIGVGFFMRPIGG 79 Query: 33503 LVFGPLADKWGRRKVLLTTMFLMAGASLGIALIPSYASIGSWASFLLLVARLVQGFAHGG 33324 +V G +ADK GRR L T+ LM + I P+Y G A +++VARL+QGF+ GG Sbjct: 80 IVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGG 139 Query: 33323 EATTSYAYIAEIAPPKRRGLWSSTVFIAVGSGSLLATFFMALLTGVLSKTEMMEWGWRXX 33144 E + AY+ E P +R G ++S + ++G +LA+ + L + ++ WGWR Sbjct: 140 EMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQQIESWGWRIP 199 Query: 33143 XXXXXXXXXXXXXLRRGMMESEHVA------TAPGGSAVTPWSPRQVFQAGVKLFLYEAG 32982 +R + + A AP V +S + G+ +F Sbjct: 200 FLLGLGLGPVGIYIRSRLNDPGFPADERLGECAPVVEVVRSFSREALVGFGLVVFWTVCS 259 Query: 32981 STLTYYTWVTSAAIYAIGVKGMDPGQAFFMSVIAQVVYIAFLPVSGWISDHWGRKATTLI 32802 L +Y YA V + F ++ + + P+ G +SD +GR+ Sbjct: 260 YVLLFY-----IPTYASKVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLFGRRWFLAG 314 Query: 32801 SLVGIAATVFPLWGLMSSEPW--TLLVAQTVGLLLVAFITGSKPAAISEQIPTRYRTRIF 32628 +L+ +PL+ ++++ P TLLV Q V L++A G AA+S+ P + Sbjct: 315 ALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFPDGVLSTGI 374 Query: 32627 GVSISLGVAVCGGTASYLSTW 32565 +S +L V GG ++ + TW Sbjct: 375 SISYNLAVITFGGFSAAIITW 395 >ref|NP_543070.1|putative replication protein DnaC Length = 252 Score = 47.0 bits (110), Expect = 2e-04 Identities = 44/170 (25%), Positives = 66/170 (38%), Gaps = 15/170 (8%) Frame = +2 Query: 45098 DFDFDANTNINPATIHTLAT--------GEWIRKGAPLCLIGDSGTGKSHLLIGLGTAAA 45253 D +FD +NP LA + + G L + G GTGK+HL + + Sbjct: 70 DCEFDNYLEVNPDAARNLAACRRYAENWPDMLENGTSLVMTGSCGTGKNHLAVSMAKHII 129 Query: 45254 EKGYRVKYTLA-----TRLVNELVEAADDKVLAKTIARYGRVDLLCIDELGYMELDRRGA 45418 + Y + TR V +K + I Y +DLL IDE+G Sbjct: 130 -RNYLASVEITDVMRLTRAVKNCWRNDSEKTADEVIEHYASMDLLIIDEVGVQFGSAAEM 188 Query: 45419 ELLFQVLTEREEK--NSIAIASNESFSGWTKTFTDPRLCAAIVDRLTFNG 45562 +L +++ R E +I I++ W F PR I DR+T G Sbjct: 189 AILQEIINARYESILPTILISNLSPEELW--AFISPR----IADRITDGG 232 >ref|NP_061611.1|orf 21 Length = 257 Score = 44.3 bits (103), Expect = 0.001 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Frame = +2 Query: 45185 LCLIGDSGTGKSHLLIGLGTAAAEKGYRVKYTLATRLVNELVEAADDKVLAKTIARYGR- 45361 L L G GTGKSHL + A KG+ V + + +++ + ++AA +K +T R Sbjct: 119 LILQGSYGTGKSHLAYAIAKAVKAKGHTVAF-MHIQMLMDRIKAAYNKNAVETTDELVRL 177 Query: 45362 ---VDLLCIDELGYMELDRRGAELLFQVLTEREEKNSI 45466 +DLL +D++G +E LF ++ R KN+I Sbjct: 178 LSDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNNI 214 >ref|NP_542287.1|unknown Length = 224 Score = 42.7 bits (99), Expect = 0.004 Identities = 50/160 (31%), Positives = 62/160 (38%), Gaps = 6/160 (3%) Frame = +3 Query: 19413 KSSTLTPASRAST------FLWVLRRRPTGTSSDS*NPTQCRSAHS*RPTSWTSSAQPGT 19574 +SST PAS S R RPT T + + RSA S WT SA P + Sbjct: 7 RSSTCIPASSISPCPAPVIITCTSRMRPTWTRPERRCASPTRSAASPTFRRWTRSAWPTS 66 Query: 19575 SSTNLALTHSFSMKSAASANGPHCCGAMLWTPSPAACPWKPSFPRTTGKTRQRTWCCSAR 19754 S L +SA GP + PS AA W R+ QR ++ Sbjct: 67 RSRRL-------RSKISSARGPAQRSSKRRLPSIAA--WSKHSARS-----QRARSLPSK 112 Query: 19755 AAPRWPSHCICISGPLPACRDPKRSSSPIAGTCGSRKCRP 19874 + P H I PL RDP R + G CG R+ RP Sbjct: 113 SLATAPQHRI----PLARTRDPIRLLPALMGACG-RRARP 147 >ref|NP_075485.1|hypothetical protein Length = 259 Score = 42.0 bits (97), Expect = 0.006 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Frame = +2 Query: 45185 LCLIGDSGTGKSHLLIGLGTAAAEKGYRVKYTLATRLVNELVEAADDKVLAKT---IARY 45355 L L G GTGKSHL + A KG+ V + L++ + + + T + Sbjct: 121 LILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRLL 180 Query: 45356 GRVDLLCIDELGYMELDRRGAELLFQVLTEREEKNSI 45466 +DLL +D++G +E LF ++ R KN+I Sbjct: 181 SDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNNI 216 >ref|NP_803371.1|dnaC Length = 259 Score = 42.0 bits (97), Expect = 0.006 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Frame = +2 Query: 45185 LCLIGDSGTGKSHLLIGLGTAAAEKGYRVKYTLATRLVNELVEAADDKVLAKT---IARY 45355 L L G GTGKSHL + A KG+ V + L++ + + + T + Sbjct: 121 LILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRLL 180 Query: 45356 GRVDLLCIDELGYMELDRRGAELLFQVLTEREEKNSI 45466 +DLL +D++G +E LF ++ R KN+I Sbjct: 181 SDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNNI 216 >ref|NP_958645.1|77ORF013 Length = 259 Score = 42.0 bits (97), Expect = 0.006 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Frame = +2 Query: 45185 LCLIGDSGTGKSHLLIGLGTAAAEKGYRVKYTLATRLVNELVEAADDKVLAKT---IARY 45355 L L G GTGKSHL + A KG+ V + L++ + + + T + Sbjct: 121 LILQGSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVRLL 180 Query: 45356 GRVDLLCIDELGYMELDRRGAELLFQVLTEREEKNSI 45466 +DLL +D++G +E LF ++ R KN+I Sbjct: 181 SDIDLLVLDDMG-VENTEHTLNKLFSIVDNRVGKNNI 216 >ref|NP_510917.1|similar to Escherichia coli DnaC Length = 259 Score = 41.2 bits (95), Expect = 0.011 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%) Frame = +2 Query: 45197 GDSGTGKSHLLIGLGTAAAEKGYRVKYTLATRLVNELVEAADDKVLAKT---IARYGRVD 45367 G GTGKSHL + A KG+ V + L++ + + + T + +D Sbjct: 125 GSYGTGKSHLAYAIAKAVKAKGHTVAFMHIPMLMDRIKATYNKNAVETTDELVKLLSEID 184 Query: 45368 LLCIDELGYMELDRRGAELLFQVLTEREEKNSI 45466 LL +D++G +E LF ++ R KN+I Sbjct: 185 LLVLDDMG-VENTEHTINKLFSIVDNRVGKNNI 216 >ref|NP_665958.1|putative glutaminase Length = 191 Score = 38.9 bits (89), Expect = 0.053 Identities = 24/61 (39%), Positives = 32/61 (52%) Frame = -1 Query: 12747 GYDSAGVAVLADRGISSRKKAGKLANLENLLRSNPLPPAQVAIGHTRWATHGAPTDANAH 12568 G S GVAV D + + G + + + LP A VA+GHTR+AT G + NAH Sbjct: 28 GGHSWGVAVAVDGELHRERGVGAMP----IDAVDALPEADVALGHTRFATRGEISLRNAH 83 Query: 12567 P 12565 P Sbjct: 84 P 84 >ref|NP_775212.1|hypothetical protein Length = 517 Score = 37.0 bits (84), Expect = 0.20 Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 6/123 (4%) Frame = -1 Query: 12855 MCGIVGYVGSVNQDQGNIENRALNVVLGGLSRLEYRGYDSAGVAVL--ADRGISSRKKAG 12682 MCG+VG+ + N I ++ L+ RG + G+A + +S K A Sbjct: 1 MCGLVGFCSTTNASDNEIA-----LLKNLLAADIVRGAHATGLAKVDPIKNEVSIHKMAV 55 Query: 12681 KLANL---ENLLRSNPLPPAQVAIGHTRWATHGAPTD-ANAHPHLADDGRLAVIHNGIIE 12514 + E+ + A++ IGH R+AT G D NAHP D + ++HNG ++ Sbjct: 56 DAYDFLAHEDTKKFLTENRARIYIGHNRYATMGDKGDHENAHPFQVD--HITMVHNGTVD 113 Query: 12513 NSG 12505 G Sbjct: 114 AWG 116 >ref|NP_038305.1|ORF5 Length = 260 Score = 36.2 bits (82), Expect = 0.34 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Frame = +2 Query: 45185 LCLIGDSGTGKSHLLIGLGTAAAEKGYRVKYTLATRLVNELVEAADD-KVLAKTIARYGR 45361 + LIG++G GKSHL A ++ + K + +V+ L + +D + A+ I R Sbjct: 122 IVLIGNTGVGKSHLAYSALKALSD--HTKKMGVFINVVDLLAKIKEDFNLEAEYIRRISE 179 Query: 45362 VDLLCIDELGYMELDRRGAELLFQVLTER 45448 + L +D+LG ++ + +L+ +L +R Sbjct: 180 AEWLVLDDLGTEKVTEWSSGILYSILNKR 208 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 286,142,472 Number of Sequences: 14420 Number of extensions: 6398526 Number of successful extensions: 22216 Number of sequences better than 0.5: 11 Number of HSP's better than 0.5 without gapping: 7830 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 22141 length of database: 3,019,461 effective HSP length: 117 effective length of database: 1,332,321 effective search space used: 24406788399 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig25 (59,682 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 57 2e-07 ref|NP_620626.1|putative transposase 44 0.002 ref|NP_852574.1|Collagen triple helix repeat protein 37 0.17 ref|NP_542583.1|hypothetical protein 37 0.29 ref|NP_958267.1|hypothetical protein 36 0.49 >ref|NP_046572.1|ABC transporter Length = 705 Score = 57.0 bits (136), Expect = 2e-07 Identities = 44/184 (23%), Positives = 91/184 (49%), Gaps = 4/184 (2%) Frame = +1 Query: 7108 VVRNVDLDFRSGEVHVLAGENGAGKSTLTKLLAGIHQPDHGTVEING-QMGPFDVKSSRT 7284 +V +++L + ++ GE+G GKST K L+ +++ ++ +NG + +D S R Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 7285 AGVTLVHQELLIAPNLTVADNLAMGQE-NRNRFRGLDRTATLENARAQLAHIGA--TFPV 7455 V + L T+ +NL MG+ ++N ++ + + ++ ++ + Sbjct: 558 RIVYIDENPFLFKG--TIKENLCMGEIFDQNE---IENACIMSQCHEFICNLDKQYSYKL 612 Query: 7456 TMRAEELTVADHQQIEIARALAQKPKILILDEPTSALSSAETERLLRIVDELRRNGTSVI 7635 + L+ Q++ +ARA+ +P++LILDE +LS+ + + I + L R +I Sbjct: 613 SENGSNLSTGQKQRLALARAILHQPQVLILDE---SLSNIDPDNTKLIYETLHRMDCLII 669 Query: 7636 YITH 7647 ITH Sbjct: 670 LITH 673 >ref|NP_620626.1|putative transposase Length = 362 Score = 43.9 bits (102), Expect = 0.002 Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 14/160 (8%) Frame = +2 Query: 20879 QLDATEYV---LTGGRKCVIFQLIDDHSRFAVASHVAAGETSEAAIAVVKKGITAHG--- 21040 Q+DA +V + +K ++ ID+ +R A+ +V +++ AI VKK I+ Sbjct: 188 QMDAKYFVPSKFSVDKKYYVYDFIDEKTRLALG-YVYDKLSTDNAIDAVKKAISDFKNIF 246 Query: 21041 --VPQKLLTDNGAALNPSRRGHQG------QLLTCVTSLGIEAVTGKPYKPTTQGKNERF 21196 + ++ TDNG+ + R +Q +T I T P + GK ERF Sbjct: 247 GIIITRIRTDNGSEFINNYRNNQKISVKKTNFTQFLTDKNILHQTTPVRSPQSNGKIERF 306 Query: 21197 HQTLFRFLDKQPLARTIEQLQEQVEAFDQLYNTERPHQGL 21316 HQ + + LQ ++ + YN ER H+ L Sbjct: 307 HQNYTKLFVFEEKILNAVSLQNKLNDYYYFYNFERVHKSL 346 Score = 43.9 bits (102), Expect = 0.002 Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 14/160 (8%) Frame = -3 Query: 35749 QLDATEYV---LTGGRKCVIFQLIDDHSRFAVASHVAAGETSEAAIAVVKKGITAHG--- 35588 Q+DA +V + +K ++ ID+ +R A+ +V +++ AI VKK I+ Sbjct: 188 QMDAKYFVPSKFSVDKKYYVYDFIDEKTRLALG-YVYDKLSTDNAIDAVKKAISDFKNIF 246 Query: 35587 --VPQKLLTDNGAALNPSRRGHQG------QLLTCVTSLGIEAVTGKPYKPTTQGKNERF 35432 + ++ TDNG+ + R +Q +T I T P + GK ERF Sbjct: 247 GIIITRIRTDNGSEFINNYRNNQKISVKKTNFTQFLTDKNILHQTTPVRSPQSNGKIERF 306 Query: 35431 HQTLFRFLDKQPLARTIEQLQEQVGAFDQLYNTERPHQGL 35312 HQ + + LQ ++ + YN ER H+ L Sbjct: 307 HQNYTKLFVFEEKILNAVSLQNKLNDYYYFYNFERVHKSL 346 >ref|NP_852574.1|Collagen triple helix repeat protein Length = 536 Score = 37.4 bits (85), Expect = 0.17 Identities = 27/92 (29%), Positives = 35/92 (38%) Frame = -2 Query: 50996 STAKPGPTGAKASLGVSCGCFPAGPTRPIAPAFVARPSTTPSSSKNARATTPSTTWASCS 50817 ST GPTG+ G++ P GPT P P T P+ S T + + Sbjct: 52 STGPTGPTGSTGLTGLTGPTGPTGPTGPTGP-------TGPTGSTGLTGPTGPNSDTGPT 104 Query: 50816 GPLSGVGSKQQVTPPSATSSSRPDAPLPAATG 50721 GP G T P T ++ P P TG Sbjct: 105 GPTGPTGPSDGPTGP--TGATGPTGPPDGPTG 134 >ref|NP_542583.1|hypothetical protein Length = 480 Score = 36.6 bits (83), Expect = 0.29 Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 1/156 (0%) Frame = +2 Query: 26762 IELEYGDRTEYVLSDSSFRCSTGGVRANSIYDG-ETFDARLESNGWALPGFNDRHWTQAK 26938 + LE R + D+S G+ N+ D E D+R++ GW L N + W + Sbjct: 121 VRLEEAYRYVFNQRDTSNGVMFSGIEFNAPGDAYEQLDSRMKPGGWFLDLKNRKTWRMIE 180 Query: 26939 PFEWNLDTLIEPAAPPIRATQEIKPASITNLSGGRSIIDFGQVISGWVRLRARGGKAGDT 27118 + EP ++++ ++ N+ G +DF QV S W + K G T Sbjct: 181 QARRDQTGSFEPKHEE-DVIRDLEAENVHNIIDGHYALDFKQV-SPWEAILEMNEKFGVT 238 Query: 27119 ITLRHAELLTPGGELDTETLRTAQATDHWILAGPED 27226 + P G+L + R A DH LA P+D Sbjct: 239 ------TWVAPDGKLWVGS-RQATGIDH--LAAPDD 265 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 35.8 bits (81), Expect = 0.49 Identities = 37/110 (33%), Positives = 42/110 (38%), Gaps = 15/110 (13%) Frame = +3 Query: 32856 FRGHRLQSRRDPR*KGARPPLPGTSCQ-RP*RLAHRVPHP------GRSPD------PRI 32996 F RL+ R P R P P T R R PHP RSPD P Sbjct: 3 FDARRLRRARPPH---TRTPAPRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCR 59 Query: 32997 ASQLRAGSGFRADP--CRTRNKRRQPSCRAHPGKGQPSVHRIPLDTIPAA 33140 + R +G R P RTR + R P C PG P+VH PAA Sbjct: 60 RAPSRPAAGPRRHPPVARTRPRTRAPECAPDPG---PAVHPAAPGCAPAA 106 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 311,278,052 Number of Sequences: 14420 Number of extensions: 6941963 Number of successful extensions: 24003 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 7929 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 23947 length of database: 3,019,461 effective HSP length: 117 effective length of database: 1,332,321 effective search space used: 26347980096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig26 (35,864 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818206.1|gp133 67 1e-10 ref|YP_024486.1|hypothetical protein 49 4e-05 ref|NP_818386.1|gp85 47 1e-04 ref|NP_818286.1|gp236 46 2e-04 ref|NP_052278.1|Int 44 8e-04 ref|NP_958267.1|hypothetical protein 43 0.002 ref|NP_536807.1|integrase 42 0.003 ref|NP_043466.1|integrase 42 0.003 ref|NP_071803.1|putative integrase 41 0.009 ref|NP_061531.1|integrase 40 0.012 ref|NP_049935.1|minor tail protein 39 0.027 ref|NP_878228.1|Int 39 0.027 ref|NP_839878.1|Int 39 0.027 ref|NP_536628.1|Int 39 0.036 ref|NP_038334.1|ORF33 39 0.046 ref|NP_958084.1|gp27 38 0.061 ref|NP_795373.1|putative integrase 38 0.079 ref|NP_438114.1|integrase-like protein 37 0.13 ref|NP_049403.2|putative tail component protein 37 0.13 ref|NP_795605.1|putative phage integrase 37 0.13 ref|NP_795541.1|putative integrase 37 0.13 ref|NP_795429.1|putative integrase 37 0.13 ref|NP_817384.1|gp46 36 0.23 ref|NP_818162.1|gp89 36 0.23 ref|NP_044833.1|tail protein 36 0.30 ref|NP_046984.1|unknown 36 0.30 ref|NP_490635.1|hypothetical protein 36 0.30 ref|NP_795660.1|putative integrase 35 0.39 ref|NP_835517.1|integrase 35 0.39 ref|NP_803356.1|integrase 35 0.39 >ref|NP_818206.1|gp133 Length = 948 Score = 67.0 bits (162), Expect = 1e-10 Identities = 46/100 (46%), Positives = 54/100 (54%), Gaps = 1/100 (1%) Frame = +3 Query: 29754 GPGPDSRGLFQQRDNGAWGTYPDRMNPTTSAMSFFTALQKVNGWEQLEPTTAAHRVQRNA 29933 G DS GLFQQR + WGT RMNP SA F AL K++ W ++ A VQR+A Sbjct: 367 GSDHDSVGLFQQRPS--WGTVAQRMNPRESAGMFLQALNKLD-WRNMDRGAACQAVQRSA 423 Query: 29934 DPFHYQSYWAAAVEVVAVLGDVKITDAG-GESSCGIPGQS 30050 P Y + AAAVE+V L T G G S GIPG S Sbjct: 424 FPGRYAAQEAAAVELVRALRTGTGTGMGTGGQSNGIPGLS 463 >ref|YP_024486.1|hypothetical protein Length = 808 Score = 48.5 bits (114), Expect = 4e-05 Identities = 43/155 (27%), Positives = 58/155 (37%), Gaps = 2/155 (1%) Frame = +3 Query: 30009 DAGGESSCGIPGQSGKDDDLPWRTAKI--YEPSPLGMYNRECVDFALWRVNQQLGSTAAP 30182 D G S G G D L K+ ++PS + NR W + G P Sbjct: 654 DKDGGSDSGGAQDGGSLDSLKKYNGKLPKHDPSFVQPGNRHYKYQCTWYAYNRRGQLGIP 713 Query: 30183 YKVLNGTFRPDGAVLGSALTWKDGWDAKGWPTGGTPRVGAVVWYSPGTGGADGTYGHVAV 30362 + G A W G G+ G TP+ GA V + G G YGHVA Sbjct: 714 VPLW-----------GDAADWIGGAKGAGYGVGRTPKQGACVIWQRGVQGGSPQYGHVAF 762 Query: 30363 VKAVHGDGSFLEEGYNGNPAPNDHTYYTRTVENST 30467 V+ V G + + PN Y TRT++ S+ Sbjct: 763 VEKVLDGGKKIFISEHNYATPNG--YGTRTIDMSS 795 >ref|NP_818386.1|gp85 Length = 424 Score = 47.0 bits (110), Expect = 1e-04 Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 12/114 (10%) Frame = +2 Query: 20342 ADPDAPLLPSERFDRELGRCGRVGGNALR----RSLGLQVDQ-------WLPAWSGRMTP 20488 A+PDA + P R G ALR R+ L+ ++ PA+ R+TP Sbjct: 302 ANPDALVFPGRRGHITNGEYRWAFDGALRTMQERTEKLRAEEIAETGRATTPAFP-RITP 360 Query: 20489 HVLRHYCASSLYGAGMDIKALQELLGHQW-LSTTSGYIHVRSEHVEQAWKNANE 20647 H LRH CAS +G ++KA+Q LLGH + T Y H+ S+ +++ NE Sbjct: 361 HDLRHTCASLAISSGANVKAVQNLLGHATAVMTLDLYGHLLSDDLDRVMTALNE 414 >ref|NP_818286.1|gp236 Length = 476 Score = 46.2 bits (108), Expect = 2e-04 Identities = 66/263 (25%), Positives = 103/263 (39%), Gaps = 43/263 (16%) Frame = +3 Query: 29676 LSARGQTIGVMTAMGESGLRVLDYGDGP----------GPDSR--GLFQQRDNGAWGTYP 29819 +S +G I + A+ E+ L++ P G D+ G+FQQR WGT Sbjct: 32 ISEKGIVIALAVALVETNLKMYANRSDPESLNFPHDAVGSDANSVGVFQQRAPW-WGTVA 90 Query: 29820 DRMNPTTSAMSFFTAL--QKVNG----WEQLEPTTAAHRVQRNADPFHYQSYWAAAVEVV 29981 DRM+ SA F+ +L Q+V G +++ P T VQ++A P Y A A ++ Sbjct: 91 DRMDVARSAAMFYNSLYRQRVGGADYNTDRVSPGTWGQMVQQSAFPDRYDKRMAEARQIY 150 Query: 29982 AVLGDVKITDAGGESSCGIPGQSGKDDDLPWRTAKIYEPSPL------GMYNRECVDFA- 30140 L D + A P + + D P ++ E + L G YNR DF Sbjct: 151 DRLKDRVVGGAPTPPPITAPDPNWRGD--PVWLKEVLEAAGLVCHVYDGAYNRGHGDFGE 208 Query: 30141 LWRV-----------------NQQLGSTAAPYKVLNGTFRPDGAVLGSALTWKDGWDA-K 30266 +W V + LG + Y NG + + G + W G + Sbjct: 209 IWGVVAHHTGSFGETPKGIAQHPSLGLASQLYLGRNGEY----TLCGVGIAWHAGQGSYP 264 Query: 30267 GWPTGGTPRVGAVVWYSPGTGGA 30335 G PT R+ + + GG+ Sbjct: 265 GLPTNDANRLTIGIEAANDGGGS 287 >ref|NP_052278.1|Int Length = 336 Score = 44.3 bits (103), Expect = 8e-04 Identities = 34/91 (37%), Positives = 47/91 (51%) Frame = +2 Query: 20363 LPSERFDRELGRCGRVGGNALRRSLGLQVDQWLPAWSGRMTPHVLRHYCASSLYGAGMDI 20542 LP ++ R C +AL R+ G++ LPA G++T HVLRH AS G +I Sbjct: 243 LPDDKKGRLFSDCYGAFRSALERT-GIE----LPA--GQLT-HVLRHTFASHFMMNGGNI 294 Query: 20543 KALQELLGHQWLSTTSGYIHVRSEHVEQAWK 20635 LQ +LGH + T Y H +H+E A K Sbjct: 295 LVLQRVLGHTDIKMTMRYAHFAPDHLEDAVK 325 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 43.1 bits (100), Expect = 0.002 Identities = 37/95 (38%), Positives = 42/95 (44%) Frame = -3 Query: 25287 RCPGRRQATHRRRNRKGPRFTASQPDRASGIHRRRGMRTIERPGTV*GRSGRIRPCSGPA 25108 R P + RRR R PR QP G+HRRRG R + R V R G P + Sbjct: 151 RTPVEDRRRTRRRRRPDPRRRV-QPRLGVGVHRRRGARRVGRRVRVRARPG---PGAARR 206 Query: 25107 HRRSPLPGHTR*PGLGRRRTIRPPIQLGRLPPRFR 25003 RR P P H R RRRT R + L PR R Sbjct: 207 PRRRPHPEHPR-AVRPRRRTGRRHRRRASLRPRHR 240 Score = 35.4 bits (80), Expect = 0.39 Identities = 32/99 (32%), Positives = 38/99 (38%) Frame = -3 Query: 25113 PAHRRSPLPGHTR*PGLGRRRTIRPPIQLGRLPPRFRALGVLDDDRRTTRTHPGISAGPP 24934 P H R+P P P RR RP LG P R R+ + D R +AGP Sbjct: 13 PPHTRTPAPRTRAHPRAHRRVRTRPHPHLG--PARDRSPDHPEPDHPCRRAPSRPAAGPR 70 Query: 24933 RRTARGDRPQARHLAVPAHRSRPRGRHRGVGPDQRPDPG 24817 R P R+RPR R P+ PDPG Sbjct: 71 RHP-------------PVARTRPRTR----APECAPDPG 92 >ref|NP_536807.1|integrase Length = 337 Score = 42.4 bits (98), Expect = 0.003 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Frame = +2 Query: 20363 LPSERFDRELGRCGRVGGNALR--RSLGLQVDQWLPAWSGRMTPHVLRHYCASSLYGAGM 20536 + E FD + GR+ +A + L+ + LP G++T HVLRH AS G Sbjct: 239 ISKELFDMLPKKRGRLFNDAYESFENAVLRAEIELP--KGQLT-HVLRHTFASHFMMNGG 295 Query: 20537 DIKALQELLGHQWLSTTSGYIHVRSEHVEQAWK 20635 +I L+E+LGH + T Y H H+E A K Sbjct: 296 NILVLKEILGHSTIEMTMRYAHFAPSHLESAVK 328 >ref|NP_043466.1|integrase Length = 337 Score = 42.4 bits (98), Expect = 0.003 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Frame = +2 Query: 20363 LPSERFDRELGRCGRVGGNALR--RSLGLQVDQWLPAWSGRMTPHVLRHYCASSLYGAGM 20536 + E FD + GR+ +A + L+ + LP G++T HVLRH AS G Sbjct: 239 ISKELFDMLPKKRGRLFNDAYESFENAVLRAEIELP--KGQLT-HVLRHTFASHFMMNGG 295 Query: 20537 DIKALQELLGHQWLSTTSGYIHVRSEHVEQAWK 20635 +I L+E+LGH + T Y H H+E A K Sbjct: 296 NILVLKEILGHSTIEMTMRYAHFAPSHLESAVK 328 >ref|NP_071803.1|putative integrase Length = 402 Score = 40.8 bits (94), Expect = 0.009 Identities = 21/57 (36%), Positives = 31/57 (54%) Frame = +2 Query: 20465 AWSGRMTPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEHVEQAWK 20635 A + R+T H LR + LY GMD A+ LLGH+ T Y V +H+E+ ++ Sbjct: 275 AGNRRLTSHKLRKLFTTILYKEGMDKLAIDWLLGHKVNPVTEAYFKVNIDHLEREYR 331 >ref|NP_061531.1|integrase Length = 369 Score = 40.4 bits (93), Expect = 0.012 Identities = 19/49 (38%), Positives = 28/49 (57%) Frame = +2 Query: 20483 TPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEHVEQA 20629 T H LRH CA+ L AG+ + +++LLGH ++ T Y H+ V A Sbjct: 287 TIHDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTERYAHLAPARVRDA 335 >ref|NP_049935.1|minor tail protein Length = 1626 Score = 39.3 bits (90), Expect = 0.027 Identities = 45/145 (31%), Positives = 59/145 (40%), Gaps = 1/145 (0%) Frame = +3 Query: 30033 GIPGQSGKDDDLPWRT-AKIYEPSPLGMYNRECVDFALWRVNQQLGSTAAPYKVLNGTFR 30209 G K DD ++ AK P G Y RECV F R+ LG +++ + L Sbjct: 1203 GTAAMGAKGDDYRFKNKAKDAGADPWGYYFRECVSFVASRL-ANLGVSSSLFSHLG---- 1257 Query: 30210 PDGAVLGSALTWKDGWDAKGWPTGGTPRVGAVVWYSPGTGGADGTYGHVAVVKAVHGDGS 30389 DG W P P+ G+V Y TGG + HV V AVHGD + Sbjct: 1258 -DGR----------QWVNARVPHLSRPKPGSVAVY---TGGPISS-NHVDFVTAVHGD-T 1301 Query: 30390 FLEEGYNGNPAPNDHTYYTRTVENS 30464 + E YN H Y R V+N+ Sbjct: 1302 YDGEEYNYGGNGQYHQYAGRHVKNA 1326 >ref|NP_878228.1|Int Length = 326 Score = 39.3 bits (90), Expect = 0.027 Identities = 18/47 (38%), Positives = 28/47 (59%) Frame = +2 Query: 20489 HVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEHVEQA 20629 H+LRH AS G +I ALQ++LGH + T Y H+ ++++ A Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNA 314 >ref|NP_839878.1|Int Length = 326 Score = 39.3 bits (90), Expect = 0.027 Identities = 18/47 (38%), Positives = 28/47 (59%) Frame = +2 Query: 20489 HVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEHVEQA 20629 H+LRH AS G +I ALQ++LGH + T Y H+ ++++ A Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNA 314 >ref|NP_536628.1|Int Length = 345 Score = 38.9 bits (89), Expect = 0.036 Identities = 20/47 (42%), Positives = 25/47 (53%) Frame = +2 Query: 20489 HVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEHVEQA 20629 HVLRH A+ DI LQ +LGHQ + T Y H +H+ QA Sbjct: 291 HVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQA 337 >ref|NP_038334.1|ORF33 Length = 1554 Score = 38.5 bits (88), Expect = 0.046 Identities = 45/145 (31%), Positives = 58/145 (40%), Gaps = 1/145 (0%) Frame = +3 Query: 30033 GIPGQSGKDDDLPWRT-AKIYEPSPLGMYNRECVDFALWRVNQQLGSTAAPYKVLNGTFR 30209 G K DD ++ AK P G Y RECV F R+ LG ++ + L Sbjct: 1131 GTAAMGAKGDDYRFKDRAKDAGADPWGYYFRECVSFVASRL-ANLGVNSSLFSHLG---- 1185 Query: 30210 PDGAVLGSALTWKDGWDAKGWPTGGTPRVGAVVWYSPGTGGADGTYGHVAVVKAVHGDGS 30389 DG W P P+ G+V Y TGG + HV V AVHGD + Sbjct: 1186 -DGR----------QWVNARVPHLSRPKPGSVAVY---TGGPISS-NHVDFVTAVHGD-T 1229 Query: 30390 FLEEGYNGNPAPNDHTYYTRTVENS 30464 + E YN H Y R V+N+ Sbjct: 1230 YDGEEYNYGGNGQYHQYAGRHVKNA 1254 >ref|NP_958084.1|gp27 Length = 349 Score = 38.1 bits (87), Expect = 0.061 Identities = 19/47 (40%), Positives = 26/47 (55%) Frame = +2 Query: 20489 HVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEHVEQA 20629 HVLRH + G +I LQ++LGH + T Y H +H+EQA Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYSHFAPDHLEQA 330 >ref|NP_795373.1|putative integrase Length = 398 Score = 37.7 bits (86), Expect = 0.079 Identities = 17/46 (36%), Positives = 27/46 (58%) Frame = +2 Query: 20477 RMTPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSE 20614 R+TPH++RH+ + AG+ ++AL + LGH + T Y V E Sbjct: 323 RVTPHMMRHFFTTQSIIAGVPMEALSKALGHTKMYMTDKYNQVHDE 368 >ref|NP_438114.1|integrase-like protein Length = 365 Score = 37.0 bits (84), Expect = 0.13 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = +2 Query: 20477 RMTPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSG-YIHV 20605 R+TPH RH AS L+ AG+ K QE LGH ++ T Y H+ Sbjct: 304 RITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHL 347 >ref|NP_049403.2|putative tail component protein Length = 1656 Score = 37.0 bits (84), Expect = 0.13 Identities = 44/138 (31%), Positives = 57/138 (41%), Gaps = 1/138 (0%) Frame = +3 Query: 30054 KDDDLPWRT-AKIYEPSPLGMYNRECVDFALWRVNQQLGSTAAPYKVLNGTFRPDGAVLG 30230 K DD ++ AK P G Y RECV F R+ LG + + L DG Sbjct: 1239 KGDDYRFKDKAKDAGVDPWGYYYRECVSFIASRL-ANLGVNPSLFSHLG-----DGR--- 1289 Query: 30231 SALTWKDGWDAKGWPTGGTPRVGAVVWYSPGTGGADGTYGHVAVVKAVHGDGSFLEEGYN 30410 W + P P+ G V Y TGG + HV V AVHGD ++ E YN Sbjct: 1290 -------QWVSARVPHLSRPKPGVVSVY---TGGPVSS-NHVDFVTAVHGD-TYDGEDYN 1337 Query: 30411 GNPAPNDHTYYTRTVENS 30464 N H + R V+N+ Sbjct: 1338 YNGDGKYHQFTGRHVKNA 1355 >ref|NP_795605.1|putative phage integrase Length = 388 Score = 37.0 bits (84), Expect = 0.13 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = +2 Query: 20483 TPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSE 20614 TPH++RH+ A+ AG+ I+ + LGH TS Y H++ E Sbjct: 331 TPHMMRHFFATQGQIAGVPIEHMAAALGHSNNYMTSQYTHIKDE 374 >ref|NP_795541.1|putative integrase Length = 384 Score = 37.0 bits (84), Expect = 0.13 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = +2 Query: 20477 RMTPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSG-YIHV 20605 R+TPH RH AS L+ AG+ K QE LGH ++ T Y H+ Sbjct: 323 RITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHL 366 >ref|NP_795429.1|putative integrase Length = 362 Score = 37.0 bits (84), Expect = 0.13 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +2 Query: 20477 RMTPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSG-YIHVRSEHVEQAWKNANERV 20653 ++T H RH AS L+ +G+ +K +Q LGH L TT Y H+ ++ N+ V Sbjct: 297 QITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAIDDIGTKFNQFV 356 Query: 20654 ESR 20662 ++ Sbjct: 357 TNK 359 >ref|NP_817384.1|gp46 Length = 436 Score = 36.2 bits (82), Expect = 0.23 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = +2 Query: 20480 MTPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHV-RSEHVEQAWKNANERVE 20656 + PH RH ++ L AG+D + E+LGH + Y H R+ H+E A + +E + Sbjct: 367 LPPHNSRHTTSTLLRAAGVDEQTRMEILGHASVDAQRIYAHADRARHLE-AMQGLSELLP 425 Query: 20657 SRFA 20668 S FA Sbjct: 426 STFA 429 >ref|NP_818162.1|gp89 Length = 874 Score = 36.2 bits (82), Expect = 0.23 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 5/80 (6%) Frame = -1 Query: 14111 PAGTGRDASAPLGPAGDGKPDCPACVASMRWPTIRP-----ILKSEWYHPAGRGRAFSQC 13947 P GTG A PLGP G P+ P V PT P +S+ HP G + S+ Sbjct: 704 PTGTGPSADGPLGPTG---PELPPGVPE---PTEVPRNRQRPAESDDNHPGGNLKPASRN 757 Query: 13946 RE*RLPSLEEPRHAARQSRG 13887 R+ EEPR R +G Sbjct: 758 RKRTRKGQEEPRRLTRWEKG 777 >ref|NP_044833.1|tail protein Length = 586 Score = 35.8 bits (81), Expect = 0.30 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Frame = +3 Query: 30255 WDAKGW-----PTGGTPRVGAVVWYSPGTGGADGTYGHVAVVKAVHGDG-SFLEEGYNGN 30416 W+A GW P+ RVG +V Y P +GH +V+ AV+G +E+ Y N Sbjct: 53 WEALGWKVRFDPSWADLRVGCIVCYIP---SGSNIWGHTSVISAVNGSSYDVIEQNYAWN 109 Query: 30417 PAPNDHT 30437 + T Sbjct: 110 GYTTERT 116 >ref|NP_046984.1|unknown Length = 402 Score = 35.8 bits (81), Expect = 0.30 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = +2 Query: 20471 SGRMTPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEHVEQAWK 20635 S R T H LR S LY GMD + LGH+ T Y EH+++ ++ Sbjct: 278 SRRFTSHKLRKLFTSILYKEGMDKLMIDWCLGHKVNPVTEAYFKANIEHLKREYR 332 >ref|NP_490635.1|hypothetical protein Length = 130 Score = 35.8 bits (81), Expect = 0.30 Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Frame = +1 Query: 22327 PTRLGRGCDPCRAELSGSGGRPRCRHGRLPRTDRQAGQRPAADRHQRRASGPRK---PRH 22497 P RLGRG RA+L+G P R G LP DR P D A P + P H Sbjct: 63 PARLGRGLRWTRADLAGHRLGPGRRRGGLP--DRHPQSLPLPDPGPLSARAPAQTAPPAH 120 Query: 22498 PVGRPRAYPPH 22530 PV P P H Sbjct: 121 PV-IPETRPTH 130 >ref|NP_795660.1|putative integrase Length = 362 Score = 35.4 bits (80), Expect = 0.39 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +2 Query: 20477 RMTPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSG-YIHVRSEHVE 20623 ++ PH RH AS L+ AG+ K QE LGH +S T Y H+ + Sbjct: 301 KINPHGFRHTHASLLFEAGVPAKLAQERLGHAKISITMDLYTHLSKNQTD 350 >ref|NP_835517.1|integrase Length = 345 Score = 35.4 bits (80), Expect = 0.39 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = +2 Query: 20480 MTPHVLRHYCASSLYGAGMDIKALQELLGHQWLS-TTSGYIHVRSEHVEQAWKNANERVE 20656 +T H LRH S L G+ I + + LGH+ ++ TTS Y H+ E + K + +E Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILE 343 Query: 20657 S 20659 S Sbjct: 344 S 344 >ref|NP_803356.1|integrase Length = 345 Score = 35.4 bits (80), Expect = 0.39 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = +2 Query: 20480 MTPHVLRHYCASSLYGAGMDIKALQELLGHQWLS-TTSGYIHVRSEHVEQAWKNANERVE 20656 +T H LRH S L G+ I + + LGH+ ++ TTS Y H+ E + K + +E Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILE 343 Query: 20657 S 20659 S Sbjct: 344 S 344 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 177,059,244 Number of Sequences: 14420 Number of extensions: 3816103 Number of successful extensions: 13690 Number of sequences better than 0.5: 30 Number of HSP's better than 0.5 without gapping: 6151 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 13664 length of database: 3,019,461 effective HSP length: 114 effective length of database: 1,375,581 effective search space used: 16286879040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig27 (40,571 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 165 3e-40 ref|NP_046572.1|ABC transporter 54 1e-06 ref|NP_818167.1|gp94 37 0.20 ref|NP_047941.2|gp50 36 0.26 ref|NP_064745.1|gp7 35 0.44 >ref|NP_945090.1|gp59 Length = 429 Score = 165 bits (418), Expect = 3e-40 Identities = 127/415 (30%), Positives = 201/415 (48%), Gaps = 9/415 (2%) Frame = -2 Query: 37957 RKAALASFLGSTLEYYDFFIYGTAAALVFPKIFFPGGDPVVALLGAMATFGVGYLARPLG 37778 R+A +A +G+ E++DF Y + ++ K+FFP D ++LL +++T GVG+ RP+G Sbjct: 20 RRAVIAVIVGNGFEWFDFISYSFFSVII-AKLFFPSTDDNLSLLLSVSTIGVGFFMRPIG 78 Query: 37777 GIVMSHFGDKVGRKQALMITLVIMGVASIGIGFLPTYGQIGYWATALLLVGRLXXXXXXX 37598 GIV+ DKVGR+ AL +T+ +M + IGF PTY G A +++V RL Sbjct: 79 GIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAG 138 Query: 37597 XXXXXASTLTMEHSPEGRRGFFTSFVMTGYASGMVLSTV--VFIPLAALPEDQLLSWGWR 37424 A+ E P R G++TS++ ++L++V VFI + L E Q+ SWGWR Sbjct: 139 GEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFI-VKCLDEQQIESWGWR 197 Query: 37423 IPFWLSVVVLGVAYWIRTRLEEPPVFEEAVDPAKPKGMPAAEVLKTQWRDVL-RVALVML 37247 IPF L + + V +IR+RL +P D + P EV+++ R+ L LV+ Sbjct: 198 IPFLLGLGLGPVGIYIRSRLNDPGF---PADERLGECAPVVEVVRSFSREALVGFGLVVF 254 Query: 37246 FSVMQTTFTVYALAYATGSSIGLDRTLMLTVNAVTIGLSMFTIPLAGIISDKFGRKKVL- 37070 ++V Y YA+ + L + V + +F PL G +SD FGR+ L Sbjct: 255 WTVCSYVLLFYIPTYAS-KVLKLPSSTGFIAVLVGASIVLFVTPLIGHLSDLFGRRWFLA 313 Query: 37069 --LVGALGCAVTSFGYFWAISEHNVPLIF--VFGFLNMSVFYSCWNGVWTVFFPEMFPAA 36902 L+ A+ A F A L+F VFG + S + G +MFP Sbjct: 314 GALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIAS-----YEGPILAALSDMFPDG 368 Query: 36901 VRYSGMAIGSQVGLI-LTGFAPVIATVLAQPGPGGWIPVASFTVVCLAVSAIAIA 36740 V +G++I + +I GF+ I T P A + + VS I+++ Sbjct: 369 VLSTGISISYNLAVITFGGFSAAIITWAIATTHNNLAP-AFYVIAAAIVSLISVS 422 >ref|NP_046572.1|ABC transporter Length = 705 Score = 53.9 bits (128), Expect = 1e-06 Identities = 42/180 (23%), Positives = 88/180 (48%), Gaps = 8/180 (4%) Frame = +3 Query: 20304 VVRDLSFDVRAGETFGFLGSNGSGKTTTIRALLGLYEPTAGVLHINGRPF-KPEHGS--- 20471 +V D++ + + +G +G+GK+T ++L LY+ +++NG + +H S Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 20472 RLGYLPEE----RGLYKKEKVMDVMTYFGRLKGMDRHSARQWSLAYLDRVDLAGKAATQV 20639 R+ Y+ E +G K+ M + ++ S + LD+ + K + Sbjct: 558 RIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDK-QYSYKLSENG 616 Query: 20640 DKLSSGEQQKVQLGVTIMNRPELLILDEPTKGFDPVNRRLLMDIIGEQKNDGATVVMVTH 20819 LS+G++Q++ L I+++P++LILDE DP N +L+ + + ++++TH Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM---DCLIILITH 673 >ref|NP_818167.1|gp94 Length = 1277 Score = 36.6 bits (83), Expect = 0.20 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%) Frame = -1 Query: 4061 PRTASTAAGINGHFILSGVRVSAAKVAANP--------RNSTAATGVPSRPGGNATTSAR 3906 P TAA + + V +A ++AAN + S A + S GG A+ Sbjct: 1160 PLAPRTAASFDDPYDAPDVDQAAMRIAANTEGDIVAAFQRSAGAEAIMSSSGGGASQYDN 1219 Query: 3905 VSRTPQGISAHQLARSRRYTAAKPAEMKRKNSEPG 3801 S +P I+A Q R Y+ ++ AE+ R+ G Sbjct: 1220 FSSSPAVIAAMQRTAGRHYSPSEQAELIREGDRGG 1254 >ref|NP_047941.2|gp50 Length = 362 Score = 36.2 bits (82), Expect = 0.26 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 6/87 (6%) Frame = -1 Query: 26675 GCSPAARSPAPRWKPSRTQNWPRRPARPASSLVSRRSRRPGSSACCAKAGGPSGSWAT-- 26502 G PA P P ++P W ++ P S +V+ +R + C A GP W Sbjct: 270 GKLPAKAKPKPSYEPFPGAAWFKK--NPKSPIVTAMGKRLVAEGCSAYRSGPGAQWTNAD 327 Query: 26501 -ASMTRWPCTRRTS---ASPWTAPRMW 26433 AS +W R S A W W Sbjct: 328 KASYAKWQRKRGYSGADADGWPGKTTW 354 >ref|NP_064745.1|gp7 Length = 540 Score = 35.4 bits (80), Expect = 0.44 Identities = 23/77 (29%), Positives = 36/77 (46%) Frame = +2 Query: 32648 STLTGVPAGKAATSAARSKAPSPGTPRSERDSATSSSRLAGRCTGPSQSCSSGTRSTLAA 32827 +T + A +ATSA+++ + SE ++ATS + A T S S S+ T AA Sbjct: 133 ATASATSATNSATSASQAATSASAAAVSEGNAATSETNAANSATSASGSASTATTQASAA 192 Query: 32828 SCSKVPPKRLKCRASTT 32878 S S A+T+ Sbjct: 193 SVSATNAATSASNAATS 209 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 193,266,796 Number of Sequences: 14420 Number of extensions: 4255576 Number of successful extensions: 16286 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 6451 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 16242 length of database: 3,019,461 effective HSP length: 115 effective length of database: 1,361,161 effective search space used: 18250446688 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig28 (50,675 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_061524.1|Orf28 151 5e-36 ref|YP_024726.1|gp53 67 2e-10 ref|NP_064745.1|gp7 43 0.003 ref|NP_958191.1|gene 15 protein 42 0.004 ref|NP_899545.1|long tail fiber distal subunit 38 0.11 ref|NP_996618.1|hypothetical protein predicted by GeneMark 37 0.14 ref|NP_720337.1|16 37 0.19 ref|YP_006417.1|gp16 37 0.19 ref|NP_839936.1|putative tail-host specificity protein 37 0.19 ref|YP_024421.1|Hypothetical protein 36 0.32 ref|NP_049860.1|gp34 long tail fiber, proximal subunit 36 0.32 ref|NP_918975.1|putative glycoprotein 36 0.42 ref|NP_958677.1|phage tail protein 36 0.42 ref|NP_996570.1|hypothetical protein predicted by GeneMark 36 0.42 ref|NP_835600.1|putative glycosyltransferases 36 0.42 >ref|NP_061524.1|Orf28 Length = 687 Score = 151 bits (382), Expect = 5e-36 Identities = 105/363 (28%), Positives = 168/363 (46%), Gaps = 7/363 (1%) Frame = -1 Query: 25232 VGLALTRGHKTKDQFRPEIQXXXXXXXXXXXVYHLWPTRIEGGYVGVDVFLVISGYLITM 25053 +G+ + G + ++P I +YH + GG+VGVD+F VISG+LI Sbjct: 1 MGMNVNSGIRISSGYKPFIDGLRALSILAVVLYHAGVPMVYGGFVGVDIFFVISGFLIVT 60 Query: 25052 HLLKGFAESPRLRLSDFYSARIRRLLPASLFVLAVVG-ISTFVLLPQTLWGTVGRQVLAS 24876 H++ + R +F++ R R+LP L VL V I+ F+L+ G QV+ S Sbjct: 61 HIVSSIQDD-RFLFGEFWARRALRILPPYLLVLFVCSAIAPFILVLPREINEFGDQVIYS 119 Query: 24875 AFYVQNWVLAADSVDYLAAGAGASPVQHYWSLSVEEQFYLVWPLFLISLLWIVKRLGGSR 24696 A + N Y + P+ H WSLSVEEQFY+V P+ + L RLG + Sbjct: 120 ALMLVNHYFLGQQ-GYFDGLSETKPLLHLWSLSVEEQFYIVAPVVIFLLYVSTSRLGQRK 178 Query: 24695 RLTVSLGXXXXXXXXXXXSLISTA---SSPQDAYFVTPTRIWEFGVGALLAICMTRQVGS 24525 +S+ I+ + + ++F+ P R WEF G +A + Sbjct: 179 ASVISVFSVLCVFAVSLYGCIALSGDGAGKNYSFFLMPLRAWEFIAGGAIAFAVP--FAQ 236 Query: 24524 KPFRSALSWVGVVGVLA---SAVIYTGSTPFPGYAALLPVLSTAAVIAAGSVDTAWAPTR 24354 + R AL + + GV+ + + G +P+P AL+PV+ A +I G + +R Sbjct: 237 RLGRLALEIIAIAGVVMLFYAIFFFNGKSPYPAGKALVPVIGAALIILCGVSNHKILVSR 296 Query: 24353 LFSLRPVQFLGDISYSLYLWHWPLIVIVPIAVSGIGSTLTSAAKVGIIVASVVLAWTTKV 24174 + S R +G +SY+ YLWHWPL+ I G S A + ++ + VLA T V Sbjct: 297 ILSFRVFVMIGLVSYAWYLWHWPLLTFGRIYSFGHKSI---ALDLSMVAIAFVLACITYV 353 Query: 24173 QIE 24165 ++ Sbjct: 354 YVD 356 Score = 94.7 bits (234), Expect = 8e-19 Identities = 59/164 (35%), Positives = 95/164 (57%), Gaps = 13/164 (7%) Frame = -3 Query: 26742 GTMTKTGDRVAA-----LDGIRGLAILAVVAYHSGLPLRYSGVVGVTIFFVLSGYLITSI 26578 G +G R+++ +DG+R L+ILAVV YH+G+P+ Y G VGV IFFV+SG+LI + Sbjct: 2 GMNVNSGIRISSGYKPFIDGLRALSILAVVLYHAGVPMVYGGFVGVDIFFVISGFLIVTH 61 Query: 26577 LDRELSQTGRVALVKFYMRRFLR-LGPAIVAAVILTTIFMLVTRDPQLAGNYWLQVV-ST 26404 + + Q R +F+ RR LR L P ++ + + I + P+ + QV+ S Sbjct: 62 IVSSI-QDDRFLFGEFWARRALRILPPYLLVLFVCSAIAPFILVLPREINEFGDQVIYSA 120 Query: 26403 LTYTSDFFMA------GVADMQVLGHTWSLSIEEQFYLVWPLAL 26290 L + +F+ G+++ + L H WSLS+EEQFY+V P+ + Sbjct: 121 LMLVNHYFLGQQGYFDGLSETKPLLHLWSLSVEEQFYIVAPVVI 164 Score = 43.9 bits (102), Expect = 0.002 Identities = 54/230 (23%), Positives = 87/230 (37%), Gaps = 35/230 (15%) Frame = -1 Query: 23819 CMYGNSGKLKVAMVGDSHANQWFPAVAKIAEDKGWTLTTYFKSGCA--FNMAPSG----- 23661 C+ SGK +VGDSHA+ + +A+ A + T GCA FN+ + Sbjct: 430 CLSIASGKEIGLLVGDSHADAAYRGIARHASLSNSVIATLSSGGCAAIFNVRINNPDVAM 489 Query: 23660 HKSCAEWNSSVRLSLAD-GGFDVIITSNVATTDYVGGYTAGVEGFRRTWQGLNDGGA--- 23493 + C + L D ++ S+ + G Y+ G G + + G Sbjct: 490 RERCENGRENAIRMLKDINPKYAVLFSSWSIYSGRGYYSLGGVGPQTPLSDVKRGFVSKV 549 Query: 23492 -------------KIIAIADTPRASSAGVADPPSCV------EAKGVDGCSFDRAEALSS 23370 +++ I P ++ P+CV CS R E S Sbjct: 550 GETIDFLKSIGVERVLIIGPVPIFKTSA----PNCVIRSLHYRISPDKNCSVSRDEVEKS 605 Query: 23369 DPQ-----KEAAEDMDLVDYLDMNDLFCIESKCPAVAGSVLVYRDGNHMT 23235 KEAA+D V ++D + FC ESKC + ++Y D NH++ Sbjct: 606 RKDVVLWLKEAADDRSGVKFIDPINAFCDESKCRSYGDEGVLYTDTNHIS 655 >ref|YP_024726.1|gp53 Length = 377 Score = 67.0 bits (162), Expect = 2e-10 Identities = 79/294 (26%), Positives = 122/294 (41%), Gaps = 17/294 (5%) Frame = -1 Query: 25121 TRIEGGYVGVDVFLVISGYLITMHLLKGFAESPRLRLSD---FYSARIRRLLPASL--FV 24957 T I + VD+F++ISGYL+ + + P R S FY R R+ PA V Sbjct: 33 TPIPDPKLAVDLFMMISGYLMAYNARLRDSVEPMTRPSSWLRFYIRRYFRIAPAYYVSLV 92 Query: 24956 LAVVGISTFV-------LLPQTLWGTVGRQVLASAFYVQNWVLAADSVDY-LAAGAGASP 24801 AVV +TF+ LL WG+ G ++ Y + A + + L S Sbjct: 93 FAVVTSTTFLKGYKVLQLLNPDFWGSGGIYDPSTITYTAGNLAAHVTFAFGLLPRYTFST 152 Query: 24800 VQHYWSLSVEEQFYLVWPLFLISLLWIVKRLGGSRRLTVSLGXXXXXXXXXXXSLISTAS 24621 + WSLS+E QFYL +P L+I+ R G+ + LG T Sbjct: 153 MLPDWSLSLEMQFYLAFP-----FLYILMRKAGAVTTAILLGVSAFAIARTL-----TGV 202 Query: 24620 SPQDAYFVTPTRIWEFGVGALLAICMTRQVGSKPFRSALSWVGVVGVLASAVIYTGSTPF 24441 P+ + P ++ F VG L+A PF + L + + + + + Sbjct: 203 FPEPGFL--PLKLSLFLVGMLIA--------EIPFGVTFRQKAAIATLTATLPFAQESTY 252 Query: 24440 PGYAALLPVLSTAAVI--AAGSVDTAWA--PTRLFSLRPVQFLGDISYSLYLWH 24291 G LLP+LS + G+ D++ A T++ R L D SY +YL+H Sbjct: 253 HGQWWLLPILSIMLYVLTVTGTEDSSRATFATKVLGSRMAYALSDASYGIYLFH 306 Score = 56.2 bits (134), Expect = 3e-07 Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 28/171 (16%) Frame = -3 Query: 26715 VAALDGIRGLAILAVVAYHSGL-------PLRYSGVVGVTIFFVLSGYLIT---SILDRE 26566 V L+G+R A + VV H + P+ + V +F ++SGYL+ + D Sbjct: 5 VPYLNGLRAFAAIWVVVAHCMIWGGWTLTPIP-DPKLAVDLFMMISGYLMAYNARLRDSV 63 Query: 26565 LSQTGRVALVKFYMRRFLRLGPA----IVAAVILTTIFM-----LVTRDPQLAGNYWLQV 26413 T + ++FY+RR+ R+ PA +V AV+ +T F+ L +P G+ + Sbjct: 64 EPMTRPSSWLRFYIRRYFRIAPAYYVSLVFAVVTSTTFLKGYKVLQLLNPDFWGSGGIYD 123 Query: 26412 VSTLTYTSDFFMAGVA---------DMQVLGHTWSLSIEEQFYLVWPLALV 26287 ST+TYT+ A V + WSLS+E QFYL +P + Sbjct: 124 PSTITYTAGNLAAHVTFAFGLLPRYTFSTMLPDWSLSLEMQFYLAFPFLYI 174 >ref|NP_064745.1|gp7 Length = 540 Score = 43.1 bits (100), Expect = 0.003 Identities = 71/321 (22%), Positives = 113/321 (35%), Gaps = 10/321 (3%) Frame = +2 Query: 18497 EPSNGSITGTPTTAGVQPLVVAL--TDSHGSRTALSAPLTVAPAGLAGIKAVSASHSAAY 18670 E + + + T AG+ A T++ S TA SA T A A A A SAS +A Sbjct: 95 ETAEVNAEASETAAGLSATAAATSATNAGASETAASASAT-ASATSATNSATSASQAATS 153 Query: 18671 ALRNDGTVWAWGRNNAGQLGNGATTDSAAPVQVTGITDVESVATTSGGAVYAKRTDGTVW 18850 A A GN AT+++ A T + S ATT A T+ Sbjct: 154 ASAA-----------AVSEGNAATSETNAANSATSASGSASTATTQASAASVSATNAATS 202 Query: 18851 AWGNNAYGQLGNRTTTNSAVPVQVTGLSDVQTVTASEEESAFAIKADGTVWAWGAN---W 19021 A +NA N + +A T + ++ + +A +A+ A A Sbjct: 203 A--SNAATSATNAAASQAAAATSETNAAASESTVTTSATNAATSEANAATSASTATTQAT 260 Query: 19022 GGQLGAGHYANQSSPAQIPELTGAKSITTGSGVYVAYAVMADGSVRAWGDNSSGKLGNGS 19201 A + ++ A E A S ++ + + D ++ A LG Sbjct: 261 NAATSASTASTSATNAATSETNAASSASSAASSATSAQASKDAALAALDSFDDRYLGQKV 320 Query: 19202 TATTSPVPVQVVGLTDITSVKSSGGAAIALKL-----DGTVWAWGSNGWGELGNGSYGSY 19366 + T + + G A +A L DG + + + W +Y S Sbjct: 321 SDPT---------------LDNDGNALVAGALYFNTTDGIMKVYDGSVW----LAAYASL 361 Query: 19367 SSVPVRVNGLSDVASIEAKRS 19429 S + N LSDV + A R+ Sbjct: 362 SGALIATNNLSDVLDVTASRT 382 >ref|NP_958191.1|gene 15 protein Length = 333 Score = 42.4 bits (98), Expect = 0.004 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Frame = -3 Query: 26685 AILAVVAYH---SGLPLRY------SGVVGVTIFFVLSGYLITSILDRELSQTGRVALVK 26533 A++ +V++H SG P Y +G + V IFF +SGYLI+ R S + Sbjct: 15 AMMVLVSHHYALSGQPEPYLFGFESAGGIAVIIFFSISGYLISKSAIRSDS------FID 68 Query: 26532 FYMRRFLRLGPAIVAAVILT-TIFMLVTRDPQLAGNYWLQVVSTLTYTSDFFMAGVADMQ 26356 F +R R+ PA+V ILT +F + D + Y+ + T +S FM+ D Sbjct: 69 FMAKRARRIFPALVPCSILTYFLFGWILND--FSAEYFSHDIVRKTISS-IFMSQAPDAD 125 Query: 26355 VLGH---------TWSLSIEEQFYLVWPLAL 26290 + H W+L +E Y++ +A+ Sbjct: 126 ITSHLIHAGINGSLWTLPLEFLCYIITGVAV 156 >ref|NP_899545.1|long tail fiber distal subunit Length = 1094 Score = 37.7 bits (86), Expect = 0.11 Identities = 79/389 (20%), Positives = 150/389 (38%), Gaps = 63/389 (16%) Frame = +2 Query: 18881 GNRTTTNSAVPVQVTGLSDVQTVTASEEESAFA-IKADGTVWAWGANWGGQL----GAGH 19045 G+ T S V + D + T +E ++ FA I G V G L AG+ Sbjct: 505 GSSNVTLSVVVANDSHTHDGRYYTETEADARFAPIAGGGYVQKTGDTMSSSLIITDSAGN 564 Query: 19046 YANQSSPAQIPE--LTGAK-------SITTGSGVYVAYAVMADG---SVRAWGDNSSGKL 19189 A S ++ + L G + S T G V ++AD SV++ S+ + Sbjct: 565 TAPASETVKVDKFGLIGNRTAVYLHNSNTAGEVVLGVGGILADNKQFSVKSTSITSTVNI 624 Query: 19190 ----------GNGSTATTSPVPVQVVGLTDITSVKSSGGAAIALKLDGTV---WA----W 19318 GN +TAT++ Q T T+ ++ ++GT W+ Sbjct: 625 TAPTFIGALSGNATTATSATSATQA---TKWTTARTLTIGKTGKSVNGTANVSWSPQEVT 681 Query: 19319 GSNGWGELGNGSYGSYSSVPVRVNGLSDVASIEAKRSASIYALRKDGTTWAWGANLQGEL 19498 G+NG G++ G+ RV ++ + A+ + S + G+ W++ A + + Sbjct: 682 GTNGAGQISFGTNN-------RVTTAEFISLLSAQGAFSTWYWTCRGS-WSYAAQVTVDT 733 Query: 19499 GIGXXXXXXXXVQVTGLSQ---TLSIITNGYSSVHALQKD------GTVWAWGWNGYGQL 19651 G G ++V G S T+ +IT +S +++ G+ ++ GW Sbjct: 734 GFGVFGTAGSVIEVHGTSTTNCTIKVITPTTASGATTRQEFIYIDNGSSYSPGWRANYNS 793 Query: 19652 GNATTTDSWVPGRAQGIS-DVRQLMTTDGSAY-------------------ALKADGSLL 19771 D W R ++ DV + DGSA + +G+L+ Sbjct: 794 SYHPLADKWTTARTLTLNGDVSGSASIDGSANVTLSVAVANDSHNHTHSDGSFTVNGTLI 853 Query: 19772 AWGNNEFGQLGIGTTTNATVPVLVGRQSG 19858 + G + + ++ + ++ + T+ + G+ G Sbjct: 854 STGVSSYDKIRVWSSGSYTIGMASGQSFG 882 >ref|NP_996618.1|hypothetical protein predicted by GeneMark Length = 381 Score = 37.4 bits (85), Expect = 0.14 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 2/102 (1%) Frame = +2 Query: 18893 TTNSAVPVQVTGLSDVQTVTASEEESAF--AIKADGTVWAWGANWGGQLGAGHYANQSSP 19066 T++ V TG++ +A ++ ++A G +W WG +GG GA Y + Sbjct: 269 TSSGGTDVPTTGVNGTGATSAWNIFTSKWGVVQASGCLWTWGNEFGGVNGASEYTANTGG 328 Query: 19067 AQIPELTGAKSITTGSGVYVAYAVMADGSVRAWGDNSSGKLG 19192 A ++ GS Y +Y+ A NSS +G Sbjct: 329 RGSVYAQPAAALFGGSWFYTSYSGSRAAYWNAGPSNSSANIG 370 >ref|NP_720337.1|16 Length = 658 Score = 37.0 bits (84), Expect = 0.19 Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 1/169 (0%) Frame = -1 Query: 3338 AKGQDLSGINATLVKGASISGKVTAPAGIDMTNMRVAYYAADSQSNETGSTQVA-ADGTY 3162 A+ Q G + L A+ +G+ AG+++ N+ + A + + ++ DGTY Sbjct: 69 AQPQQQGGFMSDLSNAAAETGRGLLQAGVNLANIPASMADAVASAGAWAGQKLGIGDGTY 128 Query: 3161 RLSGLAAGSYKLKFDGYQSGALTQWYSNASSFSDASAVGITAGQDLTGINATLVKGATIS 2982 + S + G Q GALT + FS+A G + A+ + G Sbjct: 129 QPSPRVTTQGLEQDFGLQQGALTPQTTEGKIFSEALPYLTPVGAERIAAQASSIAGRVAQ 188 Query: 2981 GKVTAPAGINLRSVYVNVMPTEPQSGMSTSFVQLAADGTYRAAGLPAGA 2835 G A + S+ N P + + +A G G AGA Sbjct: 189 GASRLLAENAVGSLAANSERDNPGALATDLGTGVALGGAINQLGRAAGA 237 >ref|YP_006417.1|gp16 Length = 658 Score = 37.0 bits (84), Expect = 0.19 Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 1/169 (0%) Frame = -1 Query: 3338 AKGQDLSGINATLVKGASISGKVTAPAGIDMTNMRVAYYAADSQSNETGSTQVA-ADGTY 3162 A+ Q G + L A+ +G+ AG+++ N+ + A + + ++ DGTY Sbjct: 69 AQPQQQGGFMSDLSNAAAETGRGLLQAGVNLANIPASMADAVASAGAWAGQKLGIGDGTY 128 Query: 3161 RLSGLAAGSYKLKFDGYQSGALTQWYSNASSFSDASAVGITAGQDLTGINATLVKGATIS 2982 + S + G Q GALT + FS+A G + A+ + G Sbjct: 129 QPSPRVTTQGLEQDFGLQQGALTPQTTEGKIFSEALPYLTPVGAERIAAQASSIAGRVAQ 188 Query: 2981 GKVTAPAGINLRSVYVNVMPTEPQSGMSTSFVQLAADGTYRAAGLPAGA 2835 G A + S+ N P + + +A G G AGA Sbjct: 189 GASRLLAENAVGSLAANSERDNPGALATDLGTGVALGGAINQLGRAAGA 237 >ref|NP_839936.1|putative tail-host specificity protein Length = 1579 Score = 37.0 bits (84), Expect = 0.19 Identities = 75/356 (21%), Positives = 123/356 (34%), Gaps = 28/356 (7%) Frame = +2 Query: 18410 YSASLNGSGGTKPYTWTITSGSLPPGLRLEPSNGSITGTPTTAGVQPLVVALTDSHGSRT 18589 ++ +N + K YT+T+TS ++ P ++ S GT + T + ++ Sbjct: 956 WTLQINLTSEWKIYTFTVTSSNVIPDRDVQFFIRSNNGTEINLKYPKVEEGSTATPYMQS 1015 Query: 18590 ALSAPLTVAPAGL---AGIKAVSASHSAAYALRNDGTVWAWGRNNAGQLGNGATTDSAAP 18760 A P+ + +++ +AY W+ R N G+ G Sbjct: 1016 ASEVTTADYPSYIGQYTDFAQADSTNPSAY-------TWSLIRGNDGERGPQGLKGDPGA 1068 Query: 18761 VQVTGITDVESVATTSGGAVYAKRTDGTVW-----AWGNNAYGQLGNRTTTNSAVPVQVT 18925 + G + T+ YA + GT A G GQ + T+ +S P + T Sbjct: 1069 TGIPGQPGADG-KTSYLHIAYATNSTGTAGFDVSNATGKTYIGQYTDFTSADSTDPSKYT 1127 Query: 18926 -----------------GLSDVQTVTASEEESAFAIKADGTVWAWGANWGGQ---LGAGH 19045 G + V + +AI + GTV A W Q L G Sbjct: 1128 WSLIKGDKGDKGDTGNDGRAGKDGVGINSTTITYAISSSGTVTP-TAGWNSQVPTLVKGQ 1186 Query: 19046 YANQSSPAQIPELTGAKSITTGSGVYVAYAVMADGSVRAWGDNSSGKLGNGSTATTSPVP 19225 Y + + T+ SG V+Y + DG+ D +GK G G TT Sbjct: 1187 YLWTKT------VWNYSDGTSESGYTVSY-IAKDGN--NGNDGIAGKDGTGIKTTT---- 1233 Query: 19226 VQVVGLTDITSVKSSGGAAIALKLDGTVWAWGSNGWGELGNGSYGSYSSVPVRVNG 19393 + G T T+ +SG + + + W W N S YS + V G Sbjct: 1234 ITYAGSTSGTTAPTSGWTSTVPTVAAGSYLWTKTVWAYTDNTSETGYSVAMMGVKG 1289 >ref|YP_024421.1|Hypothetical protein Length = 741 Score = 36.2 bits (82), Expect = 0.32 Identities = 43/160 (26%), Positives = 52/160 (32%), Gaps = 13/160 (8%) Frame = +3 Query: 2019 GRGGVGRNVDLRGVNAGGHGELAADGRTLDECGVDAAHVLARGDGDSGGCFNRG*VVVPL 2198 G GG GR GG G AA L + G GG NR Sbjct: 510 GGGGSGRTAGGNDSIGGGGGGGAALVSVLSSNAIGGQTATIVVGGGGGGAANRAIAAGNG 569 Query: 2199 GQRPAVGSGELELVGPGGKP----VQLVFAVGAH---------LGAGGIPGNVVARVRRH 2339 G G+G + L GG+ VQ +A G + GAG GN + V Sbjct: 570 GNSSVSGAGIVGLSWTGGRAGANGVQGYYASGGNGGNNSSNVGAGAGASSGNAASGVSGG 629 Query: 2340 GDAGEGDPCGSADSSADGGALRQGGVDAGQVLRGCHVHGG 2459 G G G G S GG+ G G + GG Sbjct: 630 GGGGTGPGNGGWRSGNGGGSNAGVGTSNGNNAQAAGGGGG 669 >ref|NP_049860.1|gp34 long tail fiber, proximal subunit Length = 1289 Score = 36.2 bits (82), Expect = 0.32 Identities = 60/251 (23%), Positives = 90/251 (35%), Gaps = 15/251 (5%) Frame = +2 Query: 18506 NGSITGTPTTAGVQPLVVALTDSHGSRTALSAPLTV----APAGLAGIKAVSASHSAAYA 18673 NGS+T T T PLV + T G A + T+ AP + K ++ + A + Sbjct: 906 NGSLTLTQQTNLSAPLVSSSTGEFGGSLAANRTFTIRNTGAPTSIVFEKGPASGANPAQS 965 Query: 18674 LRNDGTVWAWGRNNAGQLGNGATTDSAAPVQVTGITDVESVATTSGGAVYAKRTDGTVWA 18853 + ++ WG Q G G+ T + +V T + + A +GTV Sbjct: 966 M----SIRVWG----NQFGGGSDTTRSTVFEVGDDTSHHFYSQRNKDGNIAFNINGTVMP 1017 Query: 18854 WGNNAYGQLGNRTTTNSAVPVQVTG---LSDVQTVTASEEESAFAIKADGT-----VWAW 19009 NA G + T V G A + F I+ D + + A Sbjct: 1018 ININASGLMNVNGTATFGRSVTANGEFISKSANAFRAINGDYGFFIRNDASNTYFLLTAA 1077 Query: 19010 GANWGGQLGAGHYA--NQSSPAQIPE-LTGAKSITTGSGVYVAYAVMADGSVRAWGDNSS 19180 G GG G NQS I E L AK +T SG + + +R+ G +S Sbjct: 1078 GDQTGGFNGLRPLLINNQSGQITIGEGLIIAKGVTINSG-----GLTVNSRIRSQGTKTS 1132 Query: 19181 GKLGNGSTATT 19213 T+ T Sbjct: 1133 DLYTRAPTSDT 1143 >ref|NP_918975.1|putative glycoprotein Length = 1270 Score = 35.8 bits (81), Expect = 0.42 Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 5/101 (4%) Frame = +1 Query: 7327 ATSAASGNVTVSSINDLRFGVQPA-----ASVLAGNALPAFTVELRTAFGWPLWKSDVPV 7491 A A +G S + FG A A+ N+ P E+ + WP KS V Sbjct: 410 AQIATTGGTASGSAQNTTFGPDNAFDGNTATYYRSNSAPLAGAEIFLGYQWPAAKSVARV 469 Query: 7492 TIGLASNPGGGTLAGTLTVYTNGWGEATFSGLSMTKAGVYT 7614 I + N GG TV + G A + ++T AG YT Sbjct: 470 QIAVTDNLSGG--PSNFTVQYSDDGSAWTTAWTVTGAGPYT 508 >ref|NP_958677.1|phage tail protein Length = 381 Score = 35.8 bits (81), Expect = 0.42 Identities = 56/235 (23%), Positives = 83/235 (35%), Gaps = 28/235 (11%) Frame = +2 Query: 18737 ATTDSAAPVQVTGITDVES--VATTSGGAVYAKRTDGTVWAWGNNAYGQLGNRTTTNSAV 18910 A TD A V G +S A T + A++ G +A G+NA Q G TT Sbjct: 105 AGTDYAIYVCDDGTVRADSNFSAPTGYTSTTARKVGGFHYAPGSNAAAQAGGNTTAQ--- 161 Query: 18911 PVQVTGLSDVQTVTASEEESAFAIKADGTVWAWGANWGG--QLGAGHYAN---------- 19054 + L D++ A+ + + A GA W LG H + Sbjct: 162 -INEYSLWDIKFRPAALDPRGMTLVA-------GAFWADIYLLGVNHLTDGTSKYNVTIA 213 Query: 19055 --QSSPAQIPELTGAKSITTGSGVYVAYA-VMADGSVRAWGDNSSGKLGNGSTATTSPVP 19225 +SP + + G S G + +A VM R N L G+T TS Sbjct: 214 DGSASPKKSTKFGGDGSAAYSDGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEATSS-- 271 Query: 19226 VQVVGLTDITSVKSSGGAAIA-----------LKLDGTVWAWGSNGWGELGNGSY 19357 G TD+ + +G A + ++ G +W WG+ G G Y Sbjct: 272 ----GGTDVPTTGVNGTGATSAWNIFTSKWGVVQASGCLWTWGNEFGGVNGASEY 322 >ref|NP_996570.1|hypothetical protein predicted by GeneMark Length = 381 Score = 35.8 bits (81), Expect = 0.42 Identities = 56/235 (23%), Positives = 83/235 (35%), Gaps = 28/235 (11%) Frame = +2 Query: 18737 ATTDSAAPVQVTGITDVES--VATTSGGAVYAKRTDGTVWAWGNNAYGQLGNRTTTNSAV 18910 A TD A V G +S A T + A++ G +A G+NA Q G TT Sbjct: 105 AGTDYAIYVCDDGTVRADSNFSAPTGYTSTTARKVGGFHYAPGSNAAAQAGGNTTAQ--- 161 Query: 18911 PVQVTGLSDVQTVTASEEESAFAIKADGTVWAWGANWGG--QLGAGHYAN---------- 19054 + L D++ A+ + + A GA W LG H + Sbjct: 162 -INEYSLWDIKFRPAALDPRGMTLVA-------GAFWADIYLLGVNHLTDGTSKYNVTIA 213 Query: 19055 --QSSPAQIPELTGAKSITTGSGVYVAYA-VMADGSVRAWGDNSSGKLGNGSTATTSPVP 19225 +SP + + G S G + +A VM R N L G+T TS Sbjct: 214 DGSASPKKSTKFGGDGSAAYSDGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEATSS-- 271 Query: 19226 VQVVGLTDITSVKSSGGAAIA-----------LKLDGTVWAWGSNGWGELGNGSY 19357 G TD+ + +G A + ++ G +W WG+ G G Y Sbjct: 272 ----GGTDVPTTGVNGTGATSAWNIFTSKWGVVQASGCLWTWGNEFGGVNGASEY 322 >ref|NP_835600.1|putative glycosyltransferases Length = 484 Score = 35.8 bits (81), Expect = 0.42 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Frame = -2 Query: 41890 SDRIRHKGFIDDPKEA--YGSADVSLVCSKNEAYGRVTAESLLMGVPVVGYELGGTTE 41723 +D + H G + A Y ADV L S NE +G + E+ L G PVV GG + Sbjct: 282 NDEVFHNGGFSREEIALLYNGADVVLQLSSNEGFGIASLEASLCGAPVVATMTGGIAD 339 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 254,827,566 Number of Sequences: 14420 Number of extensions: 5534595 Number of successful extensions: 18708 Number of sequences better than 0.5: 15 Number of HSP's better than 0.5 without gapping: 7184 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 18610 length of database: 3,019,461 effective HSP length: 116 effective length of database: 1,346,741 effective search space used: 22591580275 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig29 (65,227 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 53 3e-06 ref|NP_064745.1|gp7 42 0.010 ref|NP_958600.1|putative lysin 39 0.048 ref|NP_943771.1|putative protein 25 38 0.11 ref|NP_047968.2|gp23 37 0.31 >ref|NP_046572.1|ABC transporter Length = 705 Score = 53.1 bits (126), Expect = 3e-06 Identities = 45/194 (23%), Positives = 89/194 (45%), Gaps = 3/194 (1%) Frame = -2 Query: 52830 VLRNVSLTVAPGTTTCIIGPSGSGKSTLLRGINRLHEPKSGDVLLAGQSALEVKPDTLRA 52651 ++ +++L + IIG SG+GKST + +++L++ + L G ++R Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 52650 RIGMVFQHFNLFPDHTALENVALA-LWSVKGMPKXXXXXXXXXXXXXXXXXXXA--DHRP 52480 RI + ++ LF T EN+ + ++ + Sbjct: 558 RIVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG 616 Query: 52479 RDLSGGQQQRVAIARALAMEPEVMLFDEATSALDPELVKGVLNLMAGLGKRGMTMLVVTH 52300 +LS GQ+QR+A+ARA+ +P+V++ DE+ S +DP+ K + L + ++++TH Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYET---LHRMDCLIILITH 673 Query: 52299 EMGFARKVADQVVF 52258 K ++VF Sbjct: 674 NDPSNFKYNKKLVF 687 >ref|NP_064745.1|gp7 Length = 540 Score = 41.6 bits (96), Expect = 0.010 Identities = 46/201 (22%), Positives = 84/201 (41%) Frame = +1 Query: 16459 SSTTAQRRCSRRTASVERDSTTSGAPMQDAQTARPERKPLAPSRQAHRTASGNTSSGTPE 16638 +S TA + +A+ +S TS + + +A + A + + + S ++SG+ Sbjct: 124 ASETAASASATASATSATNSATSASQAATSASAAAVSEGNAATSETNAANSATSASGSAS 183 Query: 16639 ERTTQGPSMARVRSAQAARTSASGACPWNGTSALYRSAPRLPSSCAAARMPAFQSKSPPE 16818 TTQ S A V + AA TSAS A + T+A A S AA + + S Sbjct: 184 TATTQA-SAASVSATNAA-TSASNAAT-SATNAAASQAAAATSETNAAASESTVTTSATN 240 Query: 16819 SGLRETGSMMLMSPADRQISMNSRTMATRPSAGSSGRYSTSNLRALTPSAAYLCGSTSRS 16998 + E + S A Q + + + +T ++ ++ S +N + SAA S S Sbjct: 241 AATSEANAATSASTATTQATNAATSASTASTSATNAATSETNAASSASSAASSATSAQAS 300 Query: 16999 MVTSPTSSPCADSKWSAEAMS 17061 + + D ++ + +S Sbjct: 301 KDAALAALDSFDDRYLGQKVS 321 >ref|NP_958600.1|putative lysin Length = 310 Score = 39.3 bits (90), Expect = 0.048 Identities = 42/157 (26%), Positives = 56/157 (35%), Gaps = 1/157 (0%) Frame = +1 Query: 7780 YGHDVSWPQCPGGLPMPPEDTEFVVVGLTNGLAFTENPCLGGQFQWVLDRGVRAQAYAMA 7959 YG D+S Q L M +F +V + GL + NP Q + G+ Y A Sbjct: 9 YGVDISSFQGTDLLAMGRSGAKFAIVKTSEGLDY-RNPKAQAQINSARNNGMMVSGYHYA 67 Query: 7960 TFPTTAQYETYGDDGPWPASTTPDRLRNVGYAEGRAALASLDEVGWRP-ERIWVDVEPRP 8136 F A NV EG A++S +VG P + D E Sbjct: 68 RFSNNA---------------------NVAAQEGNYAVSSAKQVGIEPGSYLACDYE--- 103 Query: 8137 QQPWPTSTAAQRQENRYVISGLLAALADAGYPHGIYS 8247 Q T R+EN I L + AGY +YS Sbjct: 104 -QGSGNETGGNREENTTAILAFLNTIVSAGYKPLLYS 139 >ref|NP_943771.1|putative protein 25 Length = 204 Score = 38.1 bits (87), Expect = 0.11 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 5/108 (4%) Frame = -1 Query: 31123 DGFVEYERLNDQGLINQGWKDSWDGINFADGRLAEPPIALCEVQAYVFAAYLARAWMAYD 30944 D + Y L Q + Q DG+N GR E A+ E Q A L + ++ +D Sbjct: 65 DYYTNYPTLGSQNSVVQ------DGMNTLVGRQEEMLNAMLEAQGKKDPAELTKIYVTFD 118 Query: 30943 DGDTVLGDKL----AGWASA-LKKQFNEQFWMPERGYYAVALDGKKQQ 30815 + L + AG ++ ++KQF E W + YY V GK +Q Sbjct: 119 SSEDALKRQQYLINAGASTTYVRKQFIENGWAGAKDYYVVEAYGKDRQ 166 >ref|NP_047968.2|gp23 Length = 249 Score = 36.6 bits (83), Expect = 0.31 Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 6/116 (5%) Frame = +1 Query: 1120 MGAINVMGSNAAETS*PIPANETSCPRANPIDTPTAVVKTPCSLCKPGPSVPRAKVSTNC 1299 +GA+ NA ET+ P+P + S P P P +V T PG A V+ C Sbjct: 21 LGALAFTSPNAPETAYPLPTH--SAPDVEPETAPLSVGATE----DPGTVPTIAPVA--C 72 Query: 1300 DLQTSRPTV----NPRSEPVTAADVQIP--PRVMSVPASSGVAVLTTSGPRTPARN 1449 +S P PR+EP T +P + ++ P+ S + GP T A + Sbjct: 73 TAPSSTPKTGRHSKPRTEPETDDTATLPRHAKPLATPSPSSTTPAGSKGPLTDAED 128 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 327,566,234 Number of Sequences: 14420 Number of extensions: 7239816 Number of successful extensions: 27021 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 8191 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 26933 length of database: 3,019,461 effective HSP length: 118 effective length of database: 1,317,901 effective search space used: 28496973323 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig30 (97,877 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 149 4e-35 ref|NP_597931.1|PhoH-like protein 136 3e-31 ref|YP_006926.1|putative PhoH-like protein 126 3e-28 ref|NP_899539.1|PhoH domain protein 107 2e-22 ref|YP_195230.1|PhoH 88 1e-16 ref|YP_024453.1|putative PhoH-related protein 64 3e-09 ref|YP_077256.1|group I glycosyltransferase 52 1e-05 ref|NP_932523.1|hypothetical protein 47 4e-04 ref|NP_958267.1|hypothetical protein 42 0.008 ref|NP_542342.1|unknown 42 0.014 ref|YP_164321.1|hypothetical protein 42 0.014 ref|NP_899326.1|gp44 41 0.024 ref|NP_445711.1|mannosyltransferase-related protein 40 0.041 ref|NP_817472.1|gp22 39 0.069 ref|NP_943898.1|gp44 clamp loader subunit 38 0.20 ref|NP_640284.1|hypothetical protein 37 0.34 ref|NP_852514.1|hypothetical protein 37 0.34 ref|NP_445726.1|first mannosyl transferase-related protein 37 0.45 ref|NP_943831.1|gp53 37 0.45 >ref|NP_945090.1|gp59 Length = 429 Score = 149 bits (377), Expect = 4e-35 Identities = 104/395 (26%), Positives = 187/395 (47%), Gaps = 3/395 (0%) Frame = +1 Query: 68275 MQSAPATRIPPHDAQGTTPRKTPGKAALASFLGSTLEYYDFFIYGTAAALVFPHLFFPSA 68454 MQ++ R A T R+ A +A +G+ E++DF Y + ++ LFFPS Sbjct: 1 MQTSTYAREAAPSASSDTHRR----AVIAVIVGNGFEWFDFISYSFFSVII-AKLFFPST 55 Query: 68455 DPAIGLIGAFATFGVAYVARPVGGLVMGHFGDKLGRKKILLLTLGIMGLASLGIGFLPTY 68634 D + L+ + +T GV + RP+GG+V+G DK+GR+ L +T+ +M + IGF PTY Sbjct: 56 DDNLSLLLSVSTIGVGFFMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTY 115 Query: 68635 EQVGVWAPVLLVAGRLXXXXXXXXXXXXXXTLTLEHSPEGKRGFFTSFVMTGYASGMVLA 68814 + G+ AP+++V RL E P + G++TS++ ++LA Sbjct: 116 KDAGLGAPLMIVVARLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILA 175 Query: 68815 TL--VFIPVTALPQEAMMSWGWRIPFWLSIVVLAIAYWVRTHLDETPVFEEAQEHRKVAP 68988 ++ VFI V L ++ + SWGWRIPF L + + + ++R+ L++ P F + + A Sbjct: 176 SVLAVFI-VKCLDEQQIESWGWRIPFLLGLGLGPVGIYIRSRLND-PGFPADERLGECA- 232 Query: 68989 MPLKEVLKFQGPDVMRVVGMSIM-SVMQTIFTVFGLAYATSTAGFDRASILTVNAVAIGL 69165 P+ EV++ + + G+ + +V + + YA+ ++ V + Sbjct: 233 -PVVEVVRSFSREALVGFGLVVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASI 291 Query: 69166 SMFAMPVAARLSDRIGRRPVLLTAAFGCSATIFLYFLALSSGNIVLVFLAAFLNMTLLYS 69345 +F P+ LSD GRR L A + F L++ + L + L+ + Sbjct: 292 VLFVTPLIGHLSDLFGRRWFLAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIA 351 Query: 69346 GFNGIWPAFFAEQFAAPVRYTGMAMGNQLGLVLAG 69450 + G A ++ F V TG+++ L ++ G Sbjct: 352 SYEGPILAALSDMFPDGVLSTGISISYNLAVITFG 386 >ref|NP_597931.1|PhoH-like protein Length = 384 Score = 136 bits (343), Expect = 3e-31 Identities = 71/172 (41%), Positives = 107/172 (62%), Gaps = 1/172 (0%) Frame = -1 Query: 5219 LTYNILSSRGKT-IRPKTLNQKNYVDAIDAHTVIFGIGPAGTGKTFLAMAKAVQALQQKE 5043 LTY S+ + + P+T QK+ +DA+ +F +GPAGTGKT++ A KE Sbjct: 165 LTYKGAESKKTSGLVPRTDKQKDLIDALKTSRQVFILGPAGTGKTYVTATYASDLYTTKE 224 Query: 5042 VSRIILTRPAVEAGERLGFLPGTLSDKIDPYLRPLYDALHDMMDPESIPRLMAAGTIEVA 4863 + +I++TRP V G+ LGFL G L++K P+ P+ D L + ++ + G IE+A Sbjct: 225 IDKIVITRPHVAVGKELGFLKGDLTEKTMPWALPVLDVLEKHLGKGAVETGIKNGNIEMA 284 Query: 4862 PLAYMRGRTLNDAFIILDEAQNTTPEQMKMFLTRLGFGSKMVVTGDVTQVDL 4707 PLA MRGR+ ++AFII+DE QN + ++KM LTR+G G+ +V+ GD Q DL Sbjct: 285 PLALMRGRSFDNAFIIVDETQNISTHELKMLLTRVGEGTTIVLNGDAQQSDL 336 >ref|YP_006926.1|putative PhoH-like protein Length = 250 Score = 126 bits (317), Expect = 3e-28 Identities = 68/196 (34%), Positives = 114/196 (58%), Gaps = 2/196 (1%) Frame = -1 Query: 5189 KTIRPKTLNQKNYVDAIDAHTVIFGIGPAGTGKTFLAMAKAVQALQQ--KEVSRIILTRP 5016 K++ K QK+Y++ I +TV GIG GTGKTF+ A Q L ++ ++IL RP Sbjct: 40 KSLVGKNREQKSYINMIKNNTVTVGIGEPGTGKTFIPSVLAAQELVDIHSDIEQVILVRP 99 Query: 5015 AVEAGERLGFLPGTLSDKIDPYLRPLYDALHDMMDPESIPRLMAAGTIEVAPLAYMRGRT 4836 G+ LG LPG L++K++P+L P+ D + + + + I+ + + RGRT Sbjct: 100 NEPLGKSLGMLPGDLAEKLEPWLEPIADGMKWAIGDHAYKGYVERQKIKFLAIEHARGRT 159 Query: 4835 LNDAFIILDEAQNTTPEQMKMFLTRLGFGSKMVVTGDVTQVDLPFGTRSGLRIVEEILQG 4656 N++++I+DEAQN + E M LTR+G ++++ GD+ Q D+ SGL ++ E+ + Sbjct: 160 FNNSYVIVDEAQNISVEAMVCLLTRVGQDCRLIICGDIAQKDIK--GDSGLALLMEVYEK 217 Query: 4655 IEDVNFSVLDASDVVR 4608 E+ FS+++ D VR Sbjct: 218 YENAPFSMIELIDNVR 233 >ref|NP_899539.1|PhoH domain protein Length = 235 Score = 107 bits (268), Expect = 2e-22 Identities = 67/215 (31%), Positives = 110/215 (51%), Gaps = 18/215 (8%) Frame = -1 Query: 5171 TLNQKNYVDAIDAHT-------VIFGIGPAGTGKTFLAMAKAVQALQQKEVSRIILTRPA 5013 T NQ+ Y A+ +F IG AGTGKT+LA + + I+ +P Sbjct: 19 TFNQEQYAAALQEEVGEDGSGAFVFAIGSAGTGKTWLATTLGADMYSAFDYTEFIILKPT 78 Query: 5012 VEAGERLGFLPGTLSDKIDPYLRPLYDALHDMMDPESIPRLMAAGTIEVAPLAYMRGRTL 4833 + GE LG+LPGTL +K++P+++ + L D + + + I P+ ++RG+T Sbjct: 79 LSCGEELGYLPGTLEEKMEPWIQTVTQPLKDRLGADKF-KCDWNKRIHAEPIQFVRGKTF 137 Query: 4832 NDAFIILDEAQNTTPEQMKMFLTRLGFGSKMVVTGDVTQVDLPFGTRSGLR-------IV 4674 ++ FI++DEAQN T +++ +TR+G +KMV GD+ Q D R+G + +V Sbjct: 138 DNCFIVVDEAQNLTKTEIQTIMTRIGENTKMVFCGDLKQDDHKMIYRTGQKEISGLAWMV 197 Query: 4673 EEI----LQGIEDVNFSVLDASDVVRHRLVGDIVN 4581 EI GIE + F+ D +L DI++ Sbjct: 198 NEIRNQQRSGIEIIEFTNKDVVRSGACKLALDIID 232 >ref|YP_195230.1|PhoH Length = 250 Score = 88.2 bits (217), Expect = 1e-16 Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 10/206 (4%) Frame = -1 Query: 5183 IRPKTLNQKNYVDAIDAHTVIFGIGPAGTGKTFLAMAKAVQAL--QQKEVSRIILTRPAV 5010 I P T NQ+ I+ G AGTGKTF+A+ A++ + + ++ + R V Sbjct: 34 IEPLTDNQRVMFSEYGQGKNIYAYGCAGTGKTFVALYLALKDVLDEYTPYDKVYIVRSLV 93 Query: 5009 EAGERLGFLPGTLSDKIDPYLRPLYDALHDMMDPESIP-------RLMAAGTIEVAPLAY 4851 E +GFLPGT DK Y P + + M + P L TI ++ Sbjct: 94 ATRE-IGFLPGTHEDKASLYQIPYKNMVKSMFEMPDDPSFEMLYENLKQQETISFWSTSF 152 Query: 4850 MRGRTLNDAFIILDEAQNTTPEQMKMFLTRLGFGSKMVVTGDVTQVDL-PFGTRSGLRIV 4674 +RG TL+++ II+DE QN ++ +TR+G SK++ GD Q DL R+G+ Sbjct: 153 LRGSTLDNSIIIVDECQNLNFHELDSIMTRVGQDSKIIFCGDANQSDLQKTNERTGILDF 212 Query: 4673 EEILQGIEDVNFSVLDASDVVRHRLV 4596 + I+Q + + + D+VR LV Sbjct: 213 QRIIQKMNEFSLIEYGIEDIVRSGLV 238 >ref|YP_024453.1|putative PhoH-related protein Length = 246 Score = 63.5 bits (153), Expect = 3e-09 Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 14/177 (7%) Frame = -1 Query: 5126 VIFGIGPAGTGKTFLAMAKAVQALQQKEVSRIILTRPAVEAGERLGFLPGTLSDKIDPYL 4947 +++ AGTGKT ++A A K + + P E LG PG ++K Y Sbjct: 53 ILWNESQAGTGKTMCSVACAYADYLNKNRKLVFIISPV---SEDLGSRPGNQTEKEMAYF 109 Query: 4946 RPLYDALHDM-MDPES--IPRLMAAGTIEVAPLA----------YMRGRTLNDAFIILDE 4806 L+DAL ++ M+PE LM ++ L ++RG L DA II++E Sbjct: 110 MGLHDALIELNMNPEQQITEMLMMEDNVKEDKLGDCWVSQISHLFLRGGNLRDATIIINE 169 Query: 4805 AQNTTPEQMKMFLTRLGF-GSKMVVTGDVTQVDLPFGTRSGLRIVEEILQGIEDVNF 4638 AQN ++K LTR+ S ++V G+ Q+DL ++SG E + E F Sbjct: 170 AQNFKRSELKKVLTRVHTKNSTVIVEGNFKQIDLKNESKSGFGDYMEYFKNYEGAVF 226 >ref|YP_077256.1|group I glycosyltransferase Length = 329 Score = 51.6 bits (122), Expect = 1e-05 Identities = 58/238 (24%), Positives = 95/238 (39%), Gaps = 11/238 (4%) Frame = +3 Query: 31845 LVLTLHDLIYYEHPSPPGFLPAPVRVLWRLYHKA---YWPQRLLLDRADVVATISHTTEA 32015 +V L DL+Y++ W+ Y Y+ R L + A V+ HT Sbjct: 90 IVTGLQDLVYFK---------------WKHYTYTPYMYFMLRHLPEAAYVIVPTYHTLSE 134 Query: 32016 L---IAKHRLTRRPVRIV--GNAPQHGHTPRDPGAGADRTLLYMGSFMPYKNVETMVRGM 32180 L K L P+R++ GN +T + A + + M P K + V Sbjct: 135 LEQYADKKGLDLPPIRVIYHGNYLNVAYTREE----AVQKVREMYGIPPNKKIILNVTNY 190 Query: 32181 AELPDMTLHLLSRITPQRQAELEALVQPGANVVFHNGV---TDAEYEALLGRTTALISLS 32351 P L L RI + + + N+ + +D E L + +S S Sbjct: 191 H--PRKDLPRLRRIREKLGDDYYLITVGKGNIYGDKSIGTISDTELSLLYAGSDVYLSAS 248 Query: 32352 RAEGYGLPLVEAMSHGTPVIASDIPIFREVGHDAVSYVHPDSPSEFANAVRRLEEPEV 32525 + EG+ LPLVEA +HG P + +DIP+ +E+G + + S E ++ +E V Sbjct: 249 QDEGFELPLVEAAAHGLPAVVTDIPVHKELGKHLKLFFY-SSDEEAIEKIKEAQEIRV 305 >ref|NP_932523.1|hypothetical protein Length = 155 Score = 46.6 bits (109), Expect = 4e-04 Identities = 40/124 (32%), Positives = 51/124 (41%), Gaps = 4/124 (3%) Frame = -1 Query: 80822 IQRAFVVAEQSHRGQKRKSGDPYITHPVAVATIXXXXXXXXXXXXXXXLHDTVEDT---- 80655 + A A H GQ K G PYI HP+ + LHD VED Sbjct: 8 LAEAIQYATNRHAGQFDKGGAPYILHPLQLMHWARRDREALDVQILCVLHDVVEDCYDDR 67 Query: 80654 PYTLADLKRDFGPEVAMLVDGVTKLDKVSFGEAAQSETVRKMVVAMAKDIRVLMIKLADR 80475 L D+ FG +A LVD VTK D GE+ + +R + DIR + K D Sbjct: 68 EEGLRDINTLFGSSMAQLVDNVTKRD----GESYECYLIR-----VNSDIRSVKCKRYDL 118 Query: 80474 LHNA 80463 +NA Sbjct: 119 RNNA 122 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 42.4 bits (98), Expect = 0.008 Identities = 63/208 (30%), Positives = 73/208 (35%), Gaps = 23/208 (11%) Frame = +2 Query: 94064 PLRRRRTVPAA--HRQPRNTSGKGRGRSPTAPTPGPMPAIFRLHPG*TAPVPAAPRCSPH 94237 P RR + PAA R P + R R+P P P PA+ PG PAAP +P Sbjct: 57 PCRRAPSRPAAGPRRHPPVARTRPRTRAPEC-APDPGPAVHPAAPGCAPAAPAAPEYAPA 115 Query: 94238 TRGTVR*C---------RCP-ARKRSTCLCSFQWAARSVCGGHKSS*TRRCQPGHGPCPA 94387 R C R P R R+ L V ++ RR P P Sbjct: 116 LRPRAPECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPRRRVQPR 175 Query: 94388 AG-----RSG------RWHIRHRRA*LQGRCPHRAPWPSSLWQSWPAHQACPPARPARGT 94534 G R G R +R R R P R P P H RP R T Sbjct: 176 LGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPE--------HPRA--VRPRRRT 225 Query: 94535 GRSGRRQLRSPLSWRHRSAGSGCPANRP 94618 GR RR R+ L RHR S P N P Sbjct: 226 GRRHRR--RASLRPRHRRHRSTPPMNTP 251 >ref|NP_542342.1|unknown Length = 164 Score = 41.6 bits (96), Expect = 0.014 Identities = 39/109 (35%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Frame = -2 Query: 57973 PDTCASTSPGERDSALPRALKSKKSPTLPSATTSRLRPKSWHWPRP---RLSAP-WRSSA 57806 P TC+S P R R+ S+ +PT SA SR PKS PRP RL+ P W S A Sbjct: 12 PTTCSSPLPISRTRDCARS--SRSAPTGRSAPWSRRSPKS---PRPSASRLANPRWSSLA 66 Query: 57805 RTTATKSGS*RSTAHGPASFAAEPMWPTPRSSAACHCWATSPSARETAA 57659 R+ P + +WP RS C + +PS R+TAA Sbjct: 67 RSFPFSP---------PTRNTSAALWPRDRS-----CSSMAPSIRKTAA 101 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 41.6 bits (96), Expect = 0.014 Identities = 52/189 (27%), Positives = 66/189 (34%), Gaps = 3/189 (1%) Frame = +2 Query: 17210 GPQIQQIDGLSVRRQDQRPQGARVQNKPQHKQRAA-GQRHHGGRAKRSLRPRQGGAGQVR 17386 G Q G+ RR DQ P V+ P+ + R G+ +R PRQG GQ Sbjct: 400 GLQGADAGGIRARRDDQEP----VRRLPRRRAGVCRADRRREGQVRRLRGPRQGRVGQ-- 453 Query: 17387 EEPGNGRDSGRAATRNRHGNRSCPRGQRHHGHGGCSEDGHRRHEGSRHHVCQQGVGRKLG 17566 G + A R R + R G G +DG H+G Sbjct: 454 -----GGRARCAGPRLRFDHSGVGEQGRCQGQGRADQDGGGAHQG--------------- 493 Query: 17567 LQQDDHRTAEELG--GQRNGKAGSQPARHNRWQPFHDPRAGRHDAESGQHGQQKAKTGPE 17740 E LG G+ G QP R Q P GR A SGQ Q+ + Sbjct: 494 --------VEVLGGRGRLQGHPAGQPER-GAVQHVGVPGPGRSLARSGQR-QRGRRRNAI 543 Query: 17741 SRIGHEEPD 17767 S HE+PD Sbjct: 544 SLCRHEQPD 552 >ref|NP_899326.1|gp44 Length = 318 Score = 40.8 bits (94), Expect = 0.024 Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 7/129 (5%) Frame = -3 Query: 85791 ERVIEAALRPKNLHDFVGQHRVRKQLSLVLEASRMRGRSADHVLLSGPPGLGKTTLSMII 85612 E + E RP+++ D V RVRK +++ +++ + +L S PG GKTT++ + Sbjct: 9 ELLWEQKYRPQSIKDCVLPERVRKLFQKMVDDNQI----PNMLLCSSSPGTGKTTVARAV 64 Query: 85611 AAEMNAPLRISSGPAIQHAG----DLAAILSSLS---EGEVLFLDEIHRMSRPAEEMLYM 85453 A+M + + + + G DL A S++S + + LDE ++ A++ L Sbjct: 65 LADMGYEVLFVNASSSRGIGLVQNDLPAFCSTVSFSGNPKAVILDEADNLTPDAQKALRG 124 Query: 85452 AMEDFRVDI 85426 +E + ++ Sbjct: 125 LIEQYSKNV 133 >ref|NP_445711.1|mannosyltransferase-related protein Length = 309 Score = 40.0 bits (92), Expect = 0.041 Identities = 20/47 (42%), Positives = 31/47 (65%) Frame = +3 Query: 32298 DAEYEALLGRTTALISLSRAEGYGLPLVEAMSHGTPVIASDIPIFRE 32438 + E LL ++ +SLS+ EG+GLPL+E+MS GTP + + F+E Sbjct: 181 EREKYRLLHKSYFYLSLSKNEGFGLPLMESMSVGTPAVYVNAFAFKE 227 >ref|NP_817472.1|gp22 Length = 1576 Score = 39.3 bits (90), Expect = 0.069 Identities = 42/137 (30%), Positives = 52/137 (37%), Gaps = 12/137 (8%) Frame = +2 Query: 70238 AHQDQGLRLPGE-AFLVEDSVQGATAGVVEDLEDHRKPAAAVPGP--GIPEPRHPVVVGA 70408 A Q GL PG AF +ED + G E R P + G G P+P P+ + Sbjct: 1250 AAQGTGLTNPGAPAFTLEDLQKEFLGGGGEGPVLKRSPQVSAEGGSGGPPQPMRPLPL-- 1307 Query: 70409 GRLRTRPDRVGPLGHAARGTQH------PAAGL---FPVSGGPGSIHGGFNVRQSDASHA 70561 + PD G G Q P AG+ P G PG G Sbjct: 1308 --ITHTPDATGQYGSGNASRQRRGLPIVPPAGMGIGIPGIGAPGQAPGQVG------PFP 1359 Query: 70562 SPSFINGKGLPGCPGEP 70612 +P+ ING LPG PG P Sbjct: 1360 TPNGINGPTLPGGPGAP 1376 >ref|NP_943898.1|gp44 clamp loader subunit Length = 321 Score = 37.7 bits (86), Expect = 0.20 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 7/131 (5%) Frame = -3 Query: 85683 GRSADHVLLSGPPGLGKTTLSMIIAAEMNAPLRISSGPAIQ---HAGDLAAILSSLSE-- 85519 GR +L S PG GKTT++ ++ E++A + SG ++ DL A S+++ Sbjct: 42 GRIPHILLFSKSPGTGKTTMARVLCNEIDAEVMFISGGKLRIDDLRNDLTAFASTMTRKP 101 Query: 85518 -GEVLFLDE-IHRMSRPAEEMLYMAMEDFRVDIVVGKGAGATAIPLELPPFTLVGATTRA 85345 G+V+ +DE ++ + E L ME F + +++ Sbjct: 102 GGKVIIIDEGDNKGMKAVHEELRSWMEAFSSNC------------------SVIMTCNNV 143 Query: 85344 GLLPGPLRDRF 85312 +PGPL+ RF Sbjct: 144 EAIPGPLKSRF 154 >ref|NP_640284.1|hypothetical protein Length = 204 Score = 37.0 bits (84), Expect = 0.34 Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 27/165 (16%) Frame = +2 Query: 77471 VFFTSRQAANDEIDQEYGANLTVKEALLVEANALLPIKDLGAAKKALQSIRDRWEEA--- 77641 V F + E+++ +G + +A+LV +K AKK L S+R E Sbjct: 15 VVFDQTEKGLAELEERFGWDDEKLDAMLVHVEEQEVVK---GAKKTLTSLRTELENVKKE 71 Query: 77642 GKVPRADMGR--------IEAGLRKVEDAV-------RQAEDENWKRSNPETKARTNSAL 77776 K P D G+ + A ++K+E + ++A+D+ K + + A ++ + Sbjct: 72 AKKPYLDAGKAIEDKYKEVLARVKKIEAPIDAAIARRKKADDDAAKAAQAKKDAEKDARI 131 Query: 77777 SQLEAAIAGLKEDLAKAEQ---------AGDQRKIKAAQEALEAR 77884 ++LEA + +D+A + +++KAA+E A+ Sbjct: 132 AELEAQLKAAGQDIAAPPEFEPKEVVLSLATAKQVKAAKELFTAK 176 >ref|NP_852514.1|hypothetical protein Length = 313 Score = 37.0 bits (84), Expect = 0.34 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Frame = +3 Query: 33684 SRHGP-ADLRTVGFHRPRPARLHEPLEFGAACVRRHEARRAFLFRPQQQDLPGVGVRRPL 33860 ++H P D+ +G + A +H+ ++ G A + E+ Q + LP V V R Sbjct: 155 NQHPPEVDVSALGVAMAK-AEVHKAVDLGVAHEQIQESAVKMTTDKQTRKLPIVDVNRSS 213 Query: 33861 FDVKIVAVIPAHHKTQVVHWSIGGRARTDGNP 33956 F ++ +A I +T +HW G + +G P Sbjct: 214 FPMEEIAKITKKEETDPIHWKTGIKYDDEGTP 245 >ref|NP_445726.1|first mannosyl transferase-related protein Length = 267 Score = 36.6 bits (83), Expect = 0.45 Identities = 33/112 (29%), Positives = 51/112 (45%) Frame = +3 Query: 32109 ADRTLLYMGSFMPYKNVETMVRGMAELPDMTLHLLSRITPQRQAELEALVQPGANVVFHN 32288 A R + + +PYK ++ ++ M E L L+S A+ F + Sbjct: 122 ARRGYVIIARNLPYKRIDNTLK-MFEGKRKELTLISD-------------HSNADFDFFS 167 Query: 32289 GVTDAEYEALLGRTTALISLSRAEGYGLPLVEAMSHGTPVIASDIPIFREVG 32444 D +Y LL I++S AEG+ +P VEAMS GTP+I ++E G Sbjct: 168 LSEDVKYY-LLSHALFYIAVSDAEGFSIPPVEAMSVGTPLIYIKKHTYKEYG 218 >ref|NP_943831.1|gp53 Length = 559 Score = 36.6 bits (83), Expect = 0.45 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 6/142 (4%) Frame = -1 Query: 5162 QKNYVDAIDAH-----TVIFGIGPAGTGKTFLAMAKAVQALQQKEVSRIILTRPAVEAGE 4998 Q+ V+AI++H T + + P GTGK+ + AV Q +E ++ R GE Sbjct: 5 QREAVEAIESHWSQGVTRVGVVLPTGTGKSTVIGRTAVNGYQNREPVLMVAHR-----GE 59 Query: 4997 RLGFLPGTLSDKIDPYL-RPLYDALHDMMDPESIPRLMAAGTIEVAPLAYMRGRTLNDAF 4821 + + GT+ + +DP + R + MD S P ++A T++ A+ R Sbjct: 60 LIDQMAGTIFE-VDPSIPRSHVGIVRAEMDDHSAPIVVA--TLQTLATAHRREAVGFRRR 116 Query: 4820 IILDEAQNTTPEQMKMFLTRLG 4755 I+ DE + E T LG Sbjct: 117 ILWDEVHHAGAEGFHTTFTELG 138 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 464,179,134 Number of Sequences: 14420 Number of extensions: 9994912 Number of successful extensions: 38510 Number of sequences better than 0.5: 19 Number of HSP's better than 0.5 without gapping: 9462 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 38347 length of database: 3,019,461 effective HSP length: 121 effective length of database: 1,274,641 effective search space used: 41430931064 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig31 (85,713 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945089.1|gp58 51 2e-05 ref|NP_945090.1|gp59 44 0.002 ref|NP_542287.1|unknown 40 0.027 ref|NP_958267.1|hypothetical protein 38 0.14 ref|NP_046572.1|ABC transporter 38 0.14 ref|NP_612899.1|hypothetical protein 37 0.40 >ref|NP_945089.1|gp58 Length = 297 Score = 51.2 bits (121), Expect = 2e-05 Identities = 29/69 (42%), Positives = 41/69 (59%) Frame = -1 Query: 7341 LKYFIAVAEERHFGRAAARLHMAQPPLSQQIRQLEEQLGTPLMVRTTRKVELTPAGQVLL 7162 L +F A A +F RAA L++AQ +S+Q+ +LE LGT L VR + + LT AGQ Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71 Query: 7161 DRGRVLLQE 7135 DR +L + Sbjct: 72 DRVHAILAD 80 >ref|NP_945090.1|gp59 Length = 429 Score = 43.9 bits (102), Expect = 0.002 Identities = 84/379 (22%), Positives = 142/379 (37%), Gaps = 32/379 (8%) Frame = +1 Query: 47755 FDGYDLIVYGSVLPTLMTE--WSLTPDQAGWLGSAALIGM-----MIGALTLGSLADRIG 47913 F+ +D I Y S ++ + + T D L S + IG+ IG + +G +AD++G Sbjct: 32 FEWFDFISY-SFFSVIIAKLFFPSTDDNLSLLLSVSTIGVGFFMRPIGGIVIGGIADKVG 90 Query: 47914 RRPVVVHGTLLFSLAAIATGLATT--------PEAFGALRFLTGIFLGGVIPNIVSLMNE 48069 RR + L + G A T P R L G GG + + + E Sbjct: 91 RRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGGEMGGATAYLRE 150 Query: 48070 LAPRANRHALTTIMLSIYSVG--SIVATLVALWVLPLL--------GWKPVFFLSGAALL 48219 P A RH T + S+G I+A+++A++++ L GW+ + FL G L Sbjct: 151 RVP-AERHGYYTSWIQA-SIGFAIILASVLAVFIVKCLDEQQIESWGWR-IPFLLGLGLG 207 Query: 48220 FLPFLYRWMPESMTFLMSRGKETEARALLRRAVPTQNHEHVHWTVPAPQHRPSVSASRLF 48399 + R + L G + R + P V R F Sbjct: 208 PVGIYIR------SRLNDPGFPADER--------------------LGECAPVVEVVRSF 241 Query: 48400 REGRLLGTPMVWLSFGMCMLMVYGLNTWLPKIMIAGGYDLGSSLQFLIVLNIGATVGALA 48579 L+G +V ++++ + T+ K++ L SS F+ VL +GA++ Sbjct: 242 SREALVGFGLVVFWTVCSYVLLFYIPTYASKVL-----KLPSSTGFIAVL-VGASIVLFV 295 Query: 48580 G---GWLGDRFGNK----XXXXXXXXXXXXXXILLGTHPGPELLNILLFIAGATTIGTLA 48738 G L D FG + +L PG + L + + G Sbjct: 296 TPLIGHLSDLFGRRWFLAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEG 355 Query: 48739 VVHAFGADYYPAEIRSTGV 48795 + A +D +P + STG+ Sbjct: 356 PILAALSDMFPDGVLSTGI 374 >ref|NP_542287.1|unknown Length = 224 Score = 40.4 bits (93), Expect = 0.027 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 5/131 (3%) Frame = +1 Query: 43978 CSTRSKPVTQRRQKRP*NMRFGSPTSTSPAESPRSWNRSLRPAASHRSRPPGSAPTAASR 44157 C++R +P R ++R SPT ++ + + R W RS P + RSR S ++A Sbjct: 28 CTSRMRPTWTRPERR-----CASPTRSAASPTFRRWTRSAWPTS--RSRRLRSKISSARG 80 Query: 44158 LTTESGKNCLPRLEPGGLAGLKSPCVRSLDSTASV-----RLPLRLRKAGYRRLGYVNGS 44322 S K LP + +S RSL S + R+PL + R L + G+ Sbjct: 81 PAQRSSKRRLPSIAAWSKHSARSQRARSLPSKSLATAPQHRIPLARTRDPIRLLPALMGA 140 Query: 44323 GCQNSRPNGVA 44355 + +RP +A Sbjct: 141 CGRRARPRSIA 151 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 38.1 bits (87), Expect = 0.14 Identities = 39/114 (34%), Positives = 47/114 (41%), Gaps = 5/114 (4%) Frame = -3 Query: 12577 RVRHLPRGCLPRGAAWARDERR-RDHYPGHPDRAGRPKRHVGT-AEPGTRHVQLGVHRRS 12404 R R +P G R D RR R P R +P+ VG G R V V R+ Sbjct: 138 RTRAVPLGPGARVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRA 197 Query: 12403 EPG---ARSPRRREHAGPVRRPVHDRRSTRADPHQAAGLDLGRLVRLHHNRHRS 12251 PG AR PRRR H R RR+ R +A+ +R H RHRS Sbjct: 198 RPGPGAARRPRRRPHPEHPRAVRPRRRTGRRHRRRAS-------LRPRHRRHRS 244 >ref|NP_046572.1|ABC transporter Length = 705 Score = 38.1 bits (87), Expect = 0.14 Identities = 39/188 (20%), Positives = 79/188 (42%), Gaps = 7/188 (3%) Frame = +2 Query: 25595 VLKDVSFDVRKGEVHALAGGNGAGKSTLMKILQGVYQADAGEILIGGKPVAINSIQDAKS 25774 +++D++ + + + + G +G GKST K L +Y+ I + G + IN Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNG--LDINRYDHLSI 555 Query: 25775 AGIGMVFQEFSLVPSLTVAQNIFLAAEPLGAGGLIDDRASER-----RAKEIFAEMEVKV 25939 + E + T+ +N+ + G + D E + E ++ + Sbjct: 556 RKRIVYIDENPFLFKGTIKENLCM-------GEIFDQNEIENACIMSQCHEFICNLDKQY 608 Query: 25940 DPRAEV--SRLGTAYWQLTEIAKALSQNAQVLIMDEPTASLARHESEALFELIDRLKQRG 26113 + S L T Q +A+A+ QVLI+DE +++ ++ ++E + R+ Sbjct: 609 SYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM---D 665 Query: 26114 ISIIYISH 26137 II I+H Sbjct: 666 CLIILITH 673 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 36.6 bits (83), Expect = 0.40 Identities = 34/99 (34%), Positives = 39/99 (39%) Frame = -3 Query: 17146 RGPDDDRQGPAHGRTVRAARRPAGSSCPAILGP**ARGVDHRRNVPAGPGRGDPQPAQPR 16967 +G D GPA + + R AG GP ARG GP RG+P PA PR Sbjct: 330 KGEKGDPGGPAGPQGPKGERGEAGPQ-----GPMGARG----ERGDTGP-RGEPGPAGPR 379 Query: 16966 HPPGTLGPAPAPCTRGTQRHRSRDGLTTGAGSRNLRKET 16850 G GP RG + G AG R R ET Sbjct: 380 GERGETGPQGPMGARGERGETGPRGEPGPAGPRGERGET 418 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 428,529,965 Number of Sequences: 14420 Number of extensions: 9386421 Number of successful extensions: 34011 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 9290 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 33883 length of database: 3,019,461 effective HSP length: 120 effective length of database: 1,289,061 effective search space used: 36673785450 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig32 (97,857 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818250.1|gp199 352 5e-96 ref|NP_818618.1|gp80 300 2e-80 ref|NP_046685.1|putative DNA polymerase 189 4e-47 ref|NP_932362.1|topoisomerase II large subunit 125 6e-28 ref|NP_046569.1|IMPB 110 2e-23 ref|NP_049621.1|gp39 topoisomerase II, large subunit, N-terminal... 102 9e-21 ref|NP_899293.1|topoisomerase II large subunit 93 5e-18 ref|NP_861694.1|gp60plus39 large subunit topoisomerase II 89 8e-17 ref|NP_943883.1|topoisomerase II large subunit 85 1e-15 ref|NP_891577.1|topoisomerase II large subunit 78 1e-13 ref|NP_112716.1|LYS 73 6e-12 ref|NP_996722.1|lysin 71 2e-11 ref|NP_663692.1|putative lysin 68 1e-10 ref|NP_046572.1|ABC transporter 68 1e-10 ref|NP_108734.1|lysin 67 2e-10 ref|NP_612994.1|hypothetical protein 66 7e-10 ref|NP_049482.1|serine 66 7e-10 ref|NP_046584.1|putative transglycosylase 59 1e-07 ref|YP_164723.1|orf88 51 2e-05 ref|NP_049618.1|gp60 topoisomerase II, large subunit, C-terminal... 49 9e-05 ref|NP_818590.1|gp52 47 4e-04 ref|NP_817967.1|gp116 45 0.001 ref|YP_164321.1|hypothetical protein 43 0.005 ref|NP_944303.1|conserved phage mega protein 42 0.008 ref|NP_690779.1|ORF46 42 0.008 ref|YP_025045.1|putative lysin protein 41 0.018 ref|NP_542296.1|unknown 41 0.024 ref|NP_040733.1|morphogenesis protein B 40 0.031 ref|YP_164756.1|orf121 39 0.069 ref|NP_958267.1|hypothetical protein 38 0.15 ref|NP_542287.1|unknown 38 0.20 ref|NP_039696.1|predicted 21.3kd protein 37 0.26 ref|NP_570367.1|collagen alpha 1(I) chain precursor 37 0.26 ref|YP_164052.1|hypothetical protein 37 0.26 >ref|NP_818250.1|gp199 Length = 1131 Score = 352 bits (902), Expect = 5e-96 Identities = 281/993 (28%), Positives = 451/993 (45%), Gaps = 79/993 (7%) Frame = -3 Query: 46702 LHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWRKATDKGIKPIIGV 46523 LH H E S+LDG +R E+ + G ++A TDH + G F F + G+KP++G Sbjct: 8 LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 67 Query: 46522 EAYVTPGTARGDKSRVRW----GEESQRKDDVSGGGSYTHMTLLSYNNVGMRNLFRASSI 46355 E RW + +RK +G +H+ LL+ NN G+RNL+ SS+ Sbjct: 68 EQ--------------RWMLNIADSRERK---TGASDSSHIVLLAENNTGLRNLWALSSL 110 Query: 46354 ASLDSVFGKWPRLDRELLNTYSEGLIATTGCPSGEVQTRLRLGQYREALEAAAEFRDIFG 46175 A F K P+LD LL Y +GL A+ GC + Q A + IFG Sbjct: 111 AYEPEQFYKKPQLDPGLLMQYRDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFG 170 Query: 46174 AENYFCEL-----------MDHGLDIE-RRVTGDLLRLAKDLNLPLVATNDLHYTHEHDA 46031 ++++ EL L+ ++ +RLAK++ +PLV ND HY HE Sbjct: 171 -DHFYSELHTWQFINPVSPEQQALNARMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQW 229 Query: 46030 KAHEALLAIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDH-------PEAC 45872 + H A+ + +GS + + G + ++ + E+R H EA Sbjct: 230 QEHRAIWDMSTGSWKKDQHEERG-------HAADWMMNADEIRHYMGLHGVGTSVIEEAM 282 Query: 45871 DNTLLIAERCEVSFNTGANYMPRFPCPEGEDETSWLVKEVDKGL-HYRYPQGIPDKV-RK 45698 N+ IA++C + MPR + ED ++ + +++G + +G+P+ V R+ Sbjct: 283 RNSGWIADQCNAEIDGKLLAMPRLHATDAEDAAAFR-RAIEEGFKRFVVDKGLPEDVYRQ 341 Query: 45697 QADYELEVITSMGFPGYFLVVADFINWAKNNGIR-------------VGPGRGSGAGSMV 45557 + +YE ++I GYF VVAD++ A+N GPGRGS GS+V Sbjct: 342 RLEYEAKLIIDKNMAGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLV 401 Query: 45556 AYAMRITDLDPLHHGLIFERFLNPDRVSMPXXXXXXXXXXRSEVIDYVTRKYGDERVAMI 45377 Y M IT +DP+ + L+FERF+NPDR P + V Y+ ++YGD V I Sbjct: 402 TYVMGITSIDPIKYDLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSI 461 Query: 45376 VTYGTIKTKQALKDSSRVLGYPFSMGETL------TKALPPAVMAKDIPLADIQNKEAKR 45215 T + +Q L+D R G PF + + + P ++P ++++ Sbjct: 462 GTRTHSRPRQMLQDLCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELP----EDEDPPT 517 Query: 45214 YSE-----AGDFRQLISTDPEAAKVFETALGIEGLKRQWGVHAAGVIMSSDPII-DVIPI 45053 + E G+ P+ + E + + R GVH AGV++++DP+ +IP Sbjct: 518 WGEVLQEIGGELAPYAKKYPDLFNLMEQMV---NMVRGVGVHPAGVLVNTDPVFPGLIPT 574 Query: 45052 MRRFQDGQVITQFDYPTSEGLGLIKMDFLGLRNLTIISDALENIKMNRG----------- 44906 R+ TQFD E LG +K D L + L ++ A + I G Sbjct: 575 RRKGGADIRATQFDMYELEELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFG 634 Query: 44905 -------IXXXXXXXXXXXTASYELLARGDTLGVFQLDGGPMRSLLKLMKPDNFEDISAV 44747 + A Y+ + RG T G+FQ++ L +P + D++ + Sbjct: 635 IPEGAEKVITLNEERYLNDPAIYDQIDRGQTAGLFQVNTPAGTKLAMRFRPRSVVDMADL 694 Query: 44746 LALYRPGPMGANAHTD-YALRKNKIQEVIPIHPELEE---PLSEILGGTYGLIVYQEQVM 44579 ++ RPG D Y R++ ++V HP +E P S + TYG++VYQEQ++ Sbjct: 695 ASINRPGVTRVPGLLDKYIERRHGREQVTYDHPLMESITGPSSSM--NTYGILVYQEQLI 752 Query: 44578 AVAQKLAGYTLGQADILRRAMGKKKKSELDKQFAGFSQGMQDN------GYSMAAVKTLW 44417 A++LAG+T G+A+ LR+ +GKKK +++ F G N G + +W Sbjct: 753 RTAKELAGFTPGEAERLRKGIGKKKMEIINELEPKFLDGCMANPEFVNQGGTRKVADRIW 812 Query: 44416 DILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLNECR 44237 L YAFNK+H Y + A++K +Y E++ L DK+ +L ECR Sbjct: 813 QSLKAAGAYAFNKSHGVGYALQPCQEAWVKHYYFDEFITGCLVI---HTDKTIRFLRECR 869 Query: 44236 RMGITVLPPDVNESALNFTPVGNDIRFGMGAIRNVGVNAVEAMVAAREKEGAYTSFKDYL 44057 + VLPPDVN+S FT IRFG+ I +G A+ ++A R + D+L Sbjct: 870 QRKRAVLPPDVNQSGAGFTLTDEGIRFGLTDISGIGDAAMPDILANR----PFKDLDDFL 925 Query: 44056 MKV-PAVVCNKRTIESLIKAGAFDSLNHHRRAL 43961 + + K +++LIK GAFD HR+ + Sbjct: 926 ARASKSGGAKKGVVDALIKVGAFDFTGEHRQVM 958 >ref|NP_818618.1|gp80 Length = 1111 Score = 300 bits (768), Expect = 2e-80 Identities = 264/929 (28%), Positives = 404/929 (43%), Gaps = 84/929 (9%) Frame = -3 Query: 46711 FVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWRKATDKGIKPI 46532 FV HTH +S D E LGM AL T++HG + F R+ ++GIKPI Sbjct: 3 FVSFHTHNTFSYADALGMPSIHAARAEELGMWALGTSNHGNVNDHAQFERECKERGIKPI 62 Query: 46531 IGVEAYVTPGTARGDKSRVRWGEESQRKDDVSGGGSYTHMTLLSYNNVGMRNLFRASSIA 46352 G E Y +P DK+R + TH+T+ + N +G RNL R + + Sbjct: 63 FGCEIYFSP-VGEEDKTRRK-----------------THLTIFAMNEIGYRNLNRIITQS 104 Query: 46351 SLDSVFGKWPRLDRELLNTYSEGLIATTGCPSGEVQTRLRLGQYR-------------EA 46211 +D+ +WP + E L EG++ +GC + L G+Y A Sbjct: 105 YVDAY--QWPTVSWENLEANHEGILVLSGCADSLLSCTLLGGKYLGEQRSHVTDDDMDNA 162 Query: 46210 LEAAAEFRDIFGAENYFC---ELMDHGLDIERRVTGDLLRLAKDLNLPLVATNDLHYTHE 46040 + D+FG N F + H D R + + L++D +PLVAT D+HY Sbjct: 163 RRQIQRYLDVFG--NRFALEVQRFPH-YDRTRALNPAIAELSRDTGVPLVATADVHYPFP 219 Query: 46039 HDAKAHEALLAIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELF-------RDHP 45881 K L A + S+ P + S + S + Y S +E+ + D Sbjct: 220 EQNKLQALLHAARWKSS---PDFAAEAS-WEHSANLTYPLSDKEIHDDLVATGLDSADAW 275 Query: 45880 EACDNTLLIAERCEVSFNTGANYMPRFPCPEGEDETSWLVKEVDKGLHYRYPQGIPDKVR 45701 +A T ++AERC V RF C +G L +E+ KG YR Q PD R Sbjct: 276 KAIQYTSILAERCTVELPKAKPL--RFVCDKGLTAKQQLSREIAKGWKYRVAQR-PDMAR 332 Query: 45700 KQADY------ELEVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRI 45539 ++A+Y E ++IT F YFLV++D + AK+ I VGP RGS A S+++Y +RI Sbjct: 333 RKAEYVKRLQYEFKIITDKDFGDYFLVISDLVRRAKDKSIDVGPARGSAAASLISYLLRI 392 Query: 45538 TDLDPLH---HGLIFERFLNPDRVSMPXXXXXXXXXXRSEVIDYVTRKYGDERVAMIVTY 45368 T++DPLH + ++FERF++P R P R E+ YG E VA + Sbjct: 393 TEIDPLHPLFNKMVFERFIDPFRSDYPDIDLDFDDEKRWEIELDAKNLYGPENVASVANN 452 Query: 45367 GTIKTKQALKDSSRVLGYPFSMGETLTKALPPAVMAKDIPLADIQNKEAKRYSEAGDFRQ 45188 K LKD +R P + + K V D KR D + Sbjct: 453 TGYHGKNTLKDVARAYKLPLETFKAIAKRTTVRVETDD-----------KRNDSISDVLE 501 Query: 45187 LISTDPEAAKVFET-------ALGIE-----GLKRQWGVHAAGVIMSSDPIIDVIPIMRR 45044 +T PE A + E A+ +E G VHA G +++SDPI DV I + Sbjct: 502 SYATHPEIAGLIEAHADKLAMAVALESGNGDGNLHSSSVHACGFVIASDPIPDVCAIYLK 561 Query: 45043 FQDG-------QVITQFDYPTSEGLGLIKMDFLGLRN-------------------LTII 44942 + QVI +D +E LG++K+DFLG L+I Sbjct: 562 DKGSGSKKTKVQVIP-YDKRDAESLGMLKVDFLGSATMGAIGLMRKWSRVELEELYLSIY 620 Query: 44941 SDALENIKMNRGIXXXXXXXXXXXTASYELLAR----GDTLGVFQLDGGPMRSLLKLMKP 44774 D I++ + I ++ + + D +G+ Q +GG R + + ++P Sbjct: 621 KDYDRWIRVQKRIKESGGKRVGFTANRFDNILKRFRNDDVVGIMQFEGGTTRQVCRNVQP 680 Query: 44773 DNFEDISAVLALYRPGPMGANAHTDYALRKNKIQEVIPIHPELEEPLSEILGGTYGLIVY 44594 +F++++A AL RPGP +TDY KN ++ IHP + + T+G IVY Sbjct: 681 VDFDELAACTALSRPGPYYGGQYTDYVAVKNGEKDWARIHP---KGFDRHVAFTFGQIVY 737 Query: 44593 QEQVMAVAQKLAGYTLGQADILRRAMGKKKKSELDKQFAGFSQGMQDN-----GYSMAAV 44429 QEQ+M + + LAG+ + +R+ +GKK + QF Q D G Sbjct: 738 QEQIMWILRDLAGFDNAEVLRVRKIIGKKLG---EFQFEAIKQAFIDGCAQTCGVDPDTA 794 Query: 44428 KTLWDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDK----- 44264 ++ + + YAFN AH+ +Y +I+YW K + E+ A+ L GD K + Sbjct: 795 LRVFGAIRTAAGYAFNIAHAYSYALIAYWQMGFKMDHTTEFFASTLYKNGDGKKEIPRRT 854 Query: 44263 SAIYLNECRRMGITVLPPDVNESALNFTP 44177 + + E R+GI D+N S N+ P Sbjct: 855 AVLQDAEAHRIGIGGW--DLNLSGANWRP 881 >ref|NP_046685.1|putative DNA polymerase Length = 1305 Score = 189 bits (480), Expect = 4e-47 Identities = 240/1033 (23%), Positives = 418/1033 (40%), Gaps = 120/1033 (11%) Frame = -3 Query: 46699 HTHTEYS---MLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWRKATD---KGIK 46538 H HT+ S +LD + EL ++ LA TDH L D R + KG Sbjct: 5 HCHTDRSNIRLLDSTNSVKELLKTAVKMEYKGLAITDHEVLSAHLDAIRTVREMKKKGDM 64 Query: 46537 P-----IIGVEAYVTPGTARGDKSRVRWGEESQRKDDVSGGGSYTHMTLLSYNNVGMRNL 46373 P I+G EAY+ E R + SG + H +L+ + G L Sbjct: 65 PEDFKLILGNEAYLVDSL------------EEVRDNYKSGVTKFPHFLMLAMDPKGHEQL 112 Query: 46372 FRASSIASLDSVF-GKWPRLD------RELLNTYSEGLIATTGCPSGEVQTRL-RLGQYR 46217 SS A +S + G R+ ELL+ +IATT C EV L ++ + Sbjct: 113 RILSSQAWENSFYTGTMERVPTVKKDVEELLSKDPGHIIATTACLGSEVNIHLLKIKAFE 172 Query: 46216 EALEAAA---------EFR----DIFGAENYFCELMDHGLDIERRVTGDLLRLAKDLNLP 46076 E ++ + EF ++FG + +F EL + + L+ +A +L Sbjct: 173 ETGDSQSIKQHKLKIHEFITWCIEVFGKDKFFIELQPALSEEQIYCNKKLIDIANGYDLQ 232 Query: 46075 LVATNDLHYTHEHDAKAHEALLAIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMREL 45896 ++ T D HY D H+A L + G ++ Y+ ++++ E+ E Sbjct: 233 MIVTTDAHYLRPEDRAIHQAFLNAKDGEREVDSFYE-----------ACFVQNVDEIHER 281 Query: 45895 FRDH------PEACDNTLLIAERCEVSFNTGANYMPRFPCPE------------------ 45788 D+ +A NT+LI E E +P+ P Sbjct: 282 M-DYIDKEVIDQAIKNTMLIGEMIEDYTIEHEPIIPKMELPNFKLRHLFKPAYDQYEYIK 340 Query: 45787 -----GEDETSWLVKEVDKGLHYRYPQG---------IPDKVRKQAD--YELEVITSMGF 45656 +++ +L+K ++ G + I +++ + +E+ + Sbjct: 341 KMSESADEQDRYLLKLIEDGFEEKLKTSELTREAFHKILNRINVELGELWEISQKLNQSM 400 Query: 45655 PGYFLVVADFIN--WAKNNG--IRVGPGRGSGAGSMVAYAMRITDLDPLHHGLIFERFLN 45488 Y++ V + IN W G VG RGS AG +V Y + T ++P+ + L R ++ Sbjct: 401 SSYYITVREIINIIWDDECGGDSLVGAARGSAAGYLVNYLLDNTQINPMQYDLPHWRHIH 460 Query: 45487 PDRVSMPXXXXXXXXXXRSEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSRVLGYPF 45308 R +P R +++ + ++GD+RV I T+GT +K AL+ + R LG Sbjct: 461 KSRPDLPDIDIDTEGSKRQKILKALRERFGDKRVLQIATFGTEGSKSALQTACRGLGIDN 520 Query: 45307 SMGETLTKALPPAVMAKDIPLAD--IQNKEAKRYSEAGDFRQLISTDPEAAKVFETALGI 45134 + + L+ + P + PL +KE R ++ I + + ETAL I Sbjct: 521 DISQYLS-GMIPFERGSNWPLKHCFYGDKETGR----KPIKEFIREVEQYPNLKETALKI 575 Query: 45133 EGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGLRN 44954 EGL + HAAGVI+ +D +M+ G ITQF+ SE +G +K D L + Sbjct: 576 EGLTNKRSSHAAGVIIFNDEYTKSNAMMKT-PKGAYITQFNMGDSEAMGSVKFDLLTIEA 634 Query: 44953 LTIISDALENIKMNRGI------------XXXXXXXXXXXTASYELLARGDTLGVFQLDG 44810 L I L+ + N I +E+ G+ + +FQ Sbjct: 635 LDKIRVTLDQLIENNEIEWQGSLKETYNKYIHPDVIEYEDDKLWEMAGNGEIMDLFQFST 694 Query: 44809 GPMRSLLKLMKPDNFEDISAVLALYRPGPMG----ANAHTDYALRKNKIQEVIPIHPELE 44642 + +KP N + + +L R G + + Y NK E + + E Sbjct: 695 EVGHQSVVKVKPKNLLEAAVTNSLMRLMSDGEEQPVDTYVKYKNNLNKWYEEMTRYGLSE 754 Query: 44641 EPLSEI---LGGTYGLIVYQEQVMAVA--QKLAGYTLGQADILRRAMGKKKKSELDKQFA 44477 + + + L YG+ QE VM + + +A + + +++ LR+++ KKK+ L + Sbjct: 755 KEIRVMERHLKDIYGVADTQEVVMQMVMDKDIANFDIKESNYLRKSIAKKKEDVLKEVEE 814 Query: 44476 GFSQGMQDNGYSMAAVKTLWDILLPFS-DYAFNKAHSAAYGVISYWTAYLKAHYAPEY-- 44306 F + ++ G S + +W++ Y+F+ H+ AY +I+ L Y P Y Sbjct: 815 LFFKKGKEIGTSDNLLNYVWNVQFKRQFGYSFSLLHTLAYSIIALQELNLNYRYNPLYWN 874 Query: 44305 MAALLTSVG-----DDKD----------KSAIYLNECRRMGITVLPPDVNESALNF-TPV 44174 A L + G D KD K A + R+ GI + PD+N++ F T + Sbjct: 875 TACLTVNSGGIDTEDTKDNKKTAATNYGKVASAIGNIRQRGIKIDLPDINKADFGFRTDI 934 Query: 44173 GND-IRFGMGAIRNVGVNAVEAMVAAREKEGAYTSFKDYLMKV-PAVVCNKRTIESLIKA 44000 N+ I FG+ + +G + + +V R Y+ F D++ ++ + + K + LIK Sbjct: 935 NNNSILFGLKGMNGIGDDVIHHIVLNR----PYSDFNDFIERMFKSGIIKKGQVIQLIKG 990 Query: 43999 GAFDSLNHHRRAL 43961 G FDS + + + Sbjct: 991 GCFDSFGNRQEIM 1003 >ref|NP_932362.1|topoisomerase II large subunit Length = 607 Score = 125 bits (315), Expect = 6e-28 Identities = 180/706 (25%), Positives = 285/706 (40%), Gaps = 31/706 (4%) Frame = -3 Query: 2626 VLEGLEAVRKRPGMYIGSTDSR-----------------GLMHCLWEIIDNSVDEAL-AG 2501 VL E V RP MY+GS GL+ + EIIDNSVDE + Sbjct: 7 VLTPREHVILRPNMYVGSVAYEPHERFLFGKFQSVSYVPGLVKIIDEIIDNSVDEGIRTD 66 Query: 2500 FGHDIKIILHAD---NSVEIHDDGRGIPIDV--EPKTGLTGVEVVFTKLHAGGKFGGGSY 2336 F KI + D SV + D+GRGIP + P + +T+ AG F + Sbjct: 67 FKFANKIDIRFDLLEGSVTVVDNGRGIPQSMVETPDGEMPKPVAAWTQTMAGSNFDDTN- 125 Query: 2335 TASGGLHGVGASVVNALSSRLDVEVDRGGKTYKMSFRRGEPGRFKDPGTKPDPAAAFEPF 2156 S G++GVG+S+ N S + E G ++ G D TKP Sbjct: 126 RVSMGMNGVGSSLTNFFSKKFIGETCDGKNFLTVTCSEGASNI--DWETKP--------- 174 Query: 2155 VNDSVLDVVGKAKRGVTGTRIRYWADRQIF---TPDAKFSYDELAARARQTSFLIPGLKL 1985 GK K GT + + D + F T D + D ++ R S + P +K Sbjct: 175 ---------GKIK----GTSVYFIPDEKHFEGRTIDQQI-IDIISDRITALSVVFPQIKF 220 Query: 1984 TVRDQRRIAGTPGELAGHEEIFHHDGGISEFVDFLAADPAVTDTWRLHGSGKFKETVPVL 1805 T+ Q IA + A + ++F + I E S +F + Sbjct: 221 TINGQ--IASM--KFADYAKMFGDESLIVE-------------------SDRFSIAICNS 257 Query: 1804 DERGHSQLAEVERDCEVDVALRWGIGYDSTVRSFVNIISTPKGGTHQSGFEQALVKTFRK 1625 E G Q+ S+VN ++ GG+H + + Sbjct: 258 PE-GFRQV------------------------SYVNGLNIKNGGSHIDYLVDGISEELMP 292 Query: 1624 AVETNARKLKAGNDKIEKDDIFAGLTAVLTVR-LAEPQFEGQTKEILGTSAVRAIVARVV 1448 A++ K +I K + LT V+ VR ++ +F+ QTKE L A V Sbjct: 293 AIK------KKHKIEISKARVKECLTMVVVVRGMSNLRFDSQTKERLTNPAGE------V 340 Query: 1447 EKEINAKLNSANRNDKAQSALLLEKIVSEMKSRISARVHKETQRRKNALETS-SMPTKLA 1271 + + ++ A+L I + + ++A T+ +K A +T+ + K Sbjct: 341 KSHFDLDFKKLSKQIMNTDAILQPIIEAALARHLAAEKAAMTKAQKAAAKTNCAKHIKAG 400 Query: 1270 DCRTDDVARSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLSNAECA 1091 + +D+ + LF+ EG+SA+G + + +RGK++N D+L N E + Sbjct: 401 EWGRNDI-ETTLFLTEGESAIGYLLKVKDENLHGGYALRGKVMNTWGMKGSDVLKNNELS 459 Query: 1090 ALIQVVGAGSGRSFDISAARYGKVILMTDADVDG-AHIRTLLLTLFFRYMRPMIDEGRV- 917 + + G DIS +Y + +MTDAD DG I LL F R+ + + DEG V Sbjct: 460 DICAITGLDLANPDDISQRKYKNIAIMTDADPDGQGSIYPCLLAFFARWPK-LFDEGSVR 518 Query: 916 FAAVPPLHRVEVINAGQKANEMIYTYSEAELHVLLARLAKEGKRYKEPIQRY-KGLGEMD 740 F P V ++N G K + YT +E E KE K YK RY KGLG + Sbjct: 519 FVKTP----VVILNKG-KNTKWFYTLTEFE---------KEKKDYKGWDLRYIKGLGSLR 564 Query: 739 AEQLAETTMDPRHRTLRKVGIENAKQAEETFDLLMGSDVAPRKDFI 602 + ++ +P + ++ EE F++L+G D A RK+++ Sbjct: 565 EHEYSDVVNNPNYDI-----VDLGDDWEELFEMLLGDDAALRKEWM 605 >ref|NP_046569.1|IMPB Length = 416 Score = 110 bits (275), Expect = 2e-23 Identities = 105/395 (26%), Positives = 169/395 (42%), Gaps = 15/395 (3%) Frame = -1 Query: 70344 RSSIMHVDMDAFFVSVE---LRSRPELVGKPVIVGYPADRSVVLSASYEARK-FGVKSAM 70177 R +I+ VDM +F+ SV + P V+ SVVL+AS +K FG+K+ Sbjct: 9 RKNILCVDMKSFYASVSAVTMGLNPLTCYLAVVGNTERQGSVVLAASPALKKDFGIKTGS 68 Query: 70176 PMAMAARICPSAVIIEPRHKLYYEVSAQLMAIFGSITD--LVEPLSVDEAFLDVGGAIRR 70003 + P I+ P+ KL+ VS ++ +F V S+DE+FLD G Sbjct: 69 RLFEIPED-PRIHIVNPQMKLFIRVSTEITKLFYRFVPEKCVHTYSIDESFLDAGKE--- 124 Query: 70002 LGSPREIGAIIRRRVRDELGITASVGIAASKFVAKIA---STRCKPDGLLLIGPDETVAY 69832 P E+ I+ + E G+ +VGI + ++K+A ++ G+ ++ Sbjct: 125 --DPEEMAKAIQSSMWREFGLMCTVGIGDNMLLSKLALDLESKKTKSGIARWRYEDVPNK 182 Query: 69831 LHSL-PVNALWGVGAKTGEVLARMGIRSVADVAATPPSALKKLLGASGEHVYRLSWGIDP 69655 L + P++ +WG+G + L RMGI ++ +A P L+K G G +Y + GID Sbjct: 183 LWKVRPLSKMWGIGGRMERNLNRMGISTIGQLAKFPLELLEKKFGIMGNQLYYHAHGIDL 242 Query: 69654 RPVTPVRLEK--SIGAEETFAVDTADDAXXXXXXXXXXXRTAERLRSTGMVARTISLKLR 69481 + ++ S G + D A R R+ V RTISL + Sbjct: 243 SEIGAPLMQGQISFGKSQILLRDYTRSEEIKAVLLEICEEVARRARTHNKVGRTISLGIG 302 Query: 69480 YTDFST---ITRSRTVHAPVDSAQLIYAVTVQLLESLGPRAMTVRLVGVRAEQLEDAAQT 69310 Y+ RS+T+ P IY + L TVR V V +ED Sbjct: 303 YSKDELGGGFHRSKTIDLPTSITMDIYRCCLMLFNKF-YSGKTVRSVSVTLSNIEDDVNQ 361 Query: 69309 SLQLSFDRRDDNWRAAEQALDRVAEKFGSKSVLPA 69205 L L F+ ++ R +D + K+GSK++L A Sbjct: 362 QLSL-FEVDNEKRRKLGFVMDGIRSKYGSKAILRA 395 >ref|NP_049621.1|gp39 topoisomerase II, large subunit, N-terminal region Length = 516 Score = 102 bits (253), Expect = 9e-21 Identities = 138/548 (25%), Positives = 217/548 (39%), Gaps = 27/548 (4%) Frame = -3 Query: 2632 LSVLEGLEAVRKRPGMYIGSTDSR-----------------GLMHCLWEIIDNSVDEALA 2504 + +L +E ++KR GMYIGS+ + GL+ + EIIDNSVDE + Sbjct: 6 IKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDEGIR 65 Query: 2503 G---FGHDIKIILHADNSVEIHDDGRGIP-IDVEPKTG--LTGVEVVFTKLHAGGKFGGG 2342 F + I + + +N V + D+GRGIP V+ TG + G +T AGG FG Sbjct: 66 TKFKFANKINVTIK-NNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFGDD 124 Query: 2341 SYTASGGLHGVGASVVNALSSRLDVEVDRGGKTYKMSFRRGEPGRFKDPGTKPDPAAAFE 2162 +GG++GVG+S+ N S E G + G Sbjct: 125 KERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNG------------------- 165 Query: 2161 PFVNDSVLDVVGKAKRGVTGTRIRYWADRQIFTPD--AKFSYDELAARARQTSFLIPGLK 1988 N S D+ GK K GTR+ + D F + ++ D R + + + P ++ Sbjct: 166 -MENKSWEDIPGKWK----GTRVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQ 220 Query: 1987 LTVRDQRRIAGTPGELAGHEEIFHHDGGISEFVDFLAADPAVTDTWRLHGSGKFKETVPV 1808 T ++ G FK+ Sbjct: 221 FTFNGKK------------------------------------------VQGNFKKYARQ 238 Query: 1807 LDERGHSQLAEVERDCEVDVALRWGIGYDSTVRSFVNIISTPKGGTHQSGFEQALVKTFR 1628 DE + + + +C + V R G+ ++VN I T GG H + A+ Sbjct: 239 YDEHA---IVQEQENCSIAVG-RSPDGFRQL--TYVNNIHTKNGGHH---IDCAMDDICE 289 Query: 1627 KAVETNARKLKAGNDKIEKDDIFAGLTAVLTVR-LAEPQFEGQTKEILGTSAVRAIVARV 1451 + RK K + K + LT V+ VR + + QTKE L TS I + + Sbjct: 290 DLIPQIKRKFKI---DVTKARVKECLTIVMFVRDMKNMRLIRQTKERL-TSPFGEIRSHI 345 Query: 1450 VEKEINAKLNSANRNDKAQSALLLEKIVSEMKSRISARVHKETQRRKNALETS-SMPTKL 1274 +++AK +R+ A+L+ I + + +++A ET+ K A + K Sbjct: 346 ---QLDAK--KISRDILNNEAILMPIIEAALARKLAAEKAAETKAAKKASKAKVHKHIKA 400 Query: 1273 ADCRTDDVARSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLSNAEC 1094 C D A + LF+ EGDSA+G R + P+RGK+LN S DML N E Sbjct: 401 NLCGKD--ADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNSWGMSYADMLKNKEL 458 Query: 1093 AALIQVVG 1070 + + G Sbjct: 459 FDICAITG 466 >ref|NP_899293.1|topoisomerase II large subunit Length = 597 Score = 92.8 bits (229), Expect = 5e-18 Identities = 96/371 (25%), Positives = 153/371 (41%), Gaps = 2/371 (0%) Frame = -3 Query: 1708 SFVNIISTPKGGTHQSGFEQALVKTFRKAVETNARKLKAGNDKIEKDDIFAGLTAVLTVR 1529 SF+N + T GGTH F L ++ RK K + K + GLT L +R Sbjct: 263 SFINGVHTINGGTHVDYFSNKLADELIPMIK---RKHKIN---VPKPQLKNGLTIGLFIR 316 Query: 1528 -LAEPQFEGQTKEILGTSAVRAIVARVVEKEINAKLNSANRNDKAQSALLLEKIVSEMKS 1352 +P+F+ QTKE L +S + +++ L + + A+ L + I+ + Sbjct: 317 NFVDPKFDSQTKERLTSS----------QGDVSPYLKDISYDKIAKKILADDDIIMPIIE 366 Query: 1351 RISARVHKETQRRKNALETSSMPTKLADCRTDDVARSELFIVEGDSALGTAKLARSSDFQ 1172 + A+ H R + + K+ D + LF+ EG SA+G R S Sbjct: 367 ALLAKQHAAEARELARKQKKAQNAKVVDHIKATMPGGTLFLTEGKSAIGYLIKVRDSKKH 426 Query: 1171 ALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRSFDISAARYGKVILMTDADVD 992 +P+RGK+L+ ++ N E ++ V+ G DI Y + ++ DADVD Sbjct: 427 GGIPLRGKVLSTWGKRPAKIMENKELCDIMSVLNIQLGND-DIRDMYYHDIGILVDADVD 485 Query: 991 G-AHIRTLLLTLFFRYMRPMIDEGRVFAAVPPLHRVEVINAGQKANEMIYTYSEAELHVL 815 G I LLL F+ + + F P VI +K + Y+ E Sbjct: 486 GKGSIFPLLLAFFYNWPELYKQKRIKFVRTP-----VVIATNKKETKWFYSIDE------ 534 Query: 814 LARLAKEGKRYKEPIQRYKGLGEMDAEQLAETTMDPRHRTLRKVGIENAKQAEETFDLLM 635 R AK K +K I+ KGLG + ++ + +P V E F+LL Sbjct: 535 -YRKAKLSKTWK--IRYIKGLGSLTEKEYKKVINEP-------VFDEIVIDDPSCFELLF 584 Query: 634 GSDVAPRKDFI 602 G D RKD++ Sbjct: 585 GDDTDKRKDWM 595 Score = 62.4 bits (150), Expect = 8e-09 Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 23/158 (14%) Frame = -3 Query: 2635 HLSVLEGLEAVRKRPGMYIGSTDSR-----------------GLMHCLWEIIDNSVDEAL 2507 + +L + V KRPGMYIGS D GL+ + E+IDNS+DEA+ Sbjct: 6 NFQILSDKQHVLKRPGMYIGSVDREAHERFVLGEYKQIEYVPGLVKIINEVIDNSLDEAI 65 Query: 2506 A---GFGHDIKIILHADNSVEIHDDGRGIPID--VEPK-TGLTGVEVVFTKLHAGGKFGG 2345 F + I++ + N + I D+GRGIP D ++P L E +T+ AG F Sbjct: 66 RTKFKFANVIEVKVEG-NRITIADNGRGIPQDKVIDPHGNELLRPEAAWTRTKAGSNFED 124 Query: 2344 GSYTASGGLHGVGASVVNALSSRLDVEVDRGGKTYKMS 2231 T G++GVGA++ N S + + G T +S Sbjct: 125 DRTTV--GMNGVGAALTNYFSHQFIGKTCDGKNTVTVS 160 >ref|NP_861694.1|gp60plus39 large subunit topoisomerase II Length = 606 Score = 89.0 bits (219), Expect = 8e-17 Identities = 90/373 (24%), Positives = 162/373 (43%), Gaps = 4/373 (1%) Frame = -3 Query: 1708 SFVNIISTPKGGTHQSGFEQALVKTFRKAVETNARKLKAGNDKIEKDDIFAGLTAVLTVR 1529 ++VN I T GG H + + ++ + ++ ++++ LT ++ +R Sbjct: 267 TYVNNIHTKNGGHHVECVMDDICEHLLPGIKKKYKGIEVTKARVKEC-----LTMLMFIR 321 Query: 1528 -LAEPQFEGQTKEILGTSA--VRAIVARVVEKEINAKLNSANRNDKAQSALLLEKIVSEM 1358 ++ +F+ QTKE L ++ +R + +K A L + AL++ + + + Sbjct: 322 DMSNMRFDSQTKERLTSTYGDIRNHIQLDAKKIAQALLKN--------EALIMPIVEAAL 373 Query: 1357 KSRISARVHKETQRRKNALETS-SMPTKLADCRTDDVARSELFIVEGDSALGTAKLARSS 1181 +++A ET+ K A + K C D A + LF+ EGDSA+G R Sbjct: 374 ARKLAAEKAAETKAAKKATKAKVHKHIKANQCGKD--ADTTLFLTEGDSAIGYLIDVRDR 431 Query: 1180 DFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRSFDISAARYGKVILMTDA 1001 + P+RGK++N S DM+ N E + + G G + Y + +MTDA Sbjct: 432 ELHGGFPLRGKVMNSWGMSYADMMKNKELFDICAITGLILGEKAE--NTNYRNIAIMTDA 489 Query: 1000 DVDGAHIRTLLLTLFFRYMRPMIDEGRVFAAVPPLHRVEVINAGQKANEMIYTYSEAELH 821 D DG L FF + ++GR+ P+ +I K + YT +E E Sbjct: 490 DHDGLGSIYPALLAFFSNWPELFEQGRIRFVKTPV----IIAQIGKTQKWFYTVAEYE-- 543 Query: 820 VLLARLAKEGKRYKEPIQRYKGLGEMDAEQLAETTMDPRHRTLRKVGIENAKQAEETFDL 641 + K I+ KGLG ++ + + +P + ++ EN K E F++ Sbjct: 544 ------EAKDTLPKHSIRYIKGLGSLEKSEYRKMIQNPVYDVVKLP--ENWK---ELFEM 592 Query: 640 LMGSDVAPRKDFI 602 LMG D RK+++ Sbjct: 593 LMGDDSELRKEWM 605 Score = 61.6 bits (148), Expect = 1e-08 Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 6/100 (6%) Frame = -3 Query: 2560 GLMHCLWEIIDNSVDEALAG---FGHDIKIILHADNSVEIHDDGRGIPID-VEPKTG--L 2399 GL+ + EIIDNSVDEA+ F + I + + +N V + D+GRGIP V +TG + Sbjct: 48 GLVKLIDEIIDNSVDEAIRTSFKFANKIDVQIK-NNQVSVEDNGRGIPQGLVTDQTGEQI 106 Query: 2398 TGVEVVFTKLHAGGKFGGGSYTASGGLHGVGASVVNALSS 2279 G +T AGG FG S +GG++GVG+S+ N S+ Sbjct: 107 PGPVAAWTIPKAGGNFGDDSERKTGGMNGVGSSLTNIFST 146 >ref|NP_943883.1|topoisomerase II large subunit Length = 613 Score = 84.7 bits (208), Expect = 1e-15 Identities = 96/400 (24%), Positives = 171/400 (42%), Gaps = 4/400 (1%) Frame = -3 Query: 1789 SQLAEVERDCEVDVALRWGIGYDSTVRSFVNIISTPKGGTHQSGFEQALVKTFRKAVETN 1610 +Q +V + +V+L + + SFVN + T +GG H G +L ++ Sbjct: 234 AQFGDVVSHNDDNVSLFFATSEEYRQLSFVNGVHTKQGGNHVYGVLDSLSDELIPMIKRQ 293 Query: 1609 ARKLKAGNDKIEKDDIFAGLTAVLTVRLAEPQFEGQTKEILGTSAVRAIVARVVEKEINA 1430 K++ +I K+ + GL L P+++GQTKE L + + + +N Sbjct: 294 -HKIEINKARI-KECLLIGL---FIRNLVAPKYDGQTKERLSSPWAQ------IRDHMNL 342 Query: 1429 KLNSANRNDKAQSALLLEKIVSEMKSRISARVHKETQRRKNALETSSMPTKLADCRTDDV 1250 + R ++ I S + + +A T+ +K A + +++ +A + Sbjct: 343 DYKALARKILKTPEVIDPIIASALAKKEAADKAAATKAQKKA-KKANVAKHVAAAGLGRL 401 Query: 1249 ARSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVG 1070 ++ LF+ EGDSA+G R+ + Q P+RGK+LNV ++L N E A L+ ++ Sbjct: 402 -KTMLFLAEGDSAIGPFTRFRNEETQGSYPLRGKMLNVWNLPDHEVLKNKEIADLLGILN 460 Query: 1069 AGSGRSFDISAARYGKVILMTDADVDG-AHIRTLLLTLFFRYMRPMIDEGRVFAAVPPLH 893 A Y + +MTDAD DG I L + F+++ ++GR+ P Sbjct: 461 VELRSK---EAPAYTDIAIMTDADQDGKGSIAMLAIAFFYKFWPHWFEQGRIHIVRTP-- 515 Query: 892 RVEVINAGQKANEMIYTYSEAELHVLLARLAKEGKRY--KEPIQRYKGLGEMDAE-QLAE 722 E I+ K + Y+ E K++ K + KGLG + E E Sbjct: 516 --EYISTNGKKTDWSYSRDEF-----------RSKKFDGKWTHRHIKGLGSLTVEGDDCE 562 Query: 721 TTMDPRHRTLRKVGIENAKQAEETFDLLMGSDVAPRKDFI 602 + L +V I++ Q E ++L G D RK ++ Sbjct: 563 YKQCIENLVLEQVVIDD--QTPELLEMLFGDDEHKRKQWL 600 Score = 54.7 bits (130), Expect = 2e-06 Identities = 51/159 (32%), Positives = 71/159 (44%), Gaps = 26/159 (16%) Frame = -3 Query: 2641 ARHLSVLEGLEAVRKRPGMYIGSTDSR-----------------GLMHCLWEIIDNSVDE 2513 ++ VL E MYIGST + GL+ E+IDNSVDE Sbjct: 2 SQEFKVLSDKEHCLINTDMYIGSTSTETHDVLVDGKFVQIAYVPGLVKITDEVIDNSVDE 61 Query: 2512 AL-AGFGHDIKI-ILHADNSVEIHDDGRGIP--IDVEPKTGLTGVEV-----VFTKLHAG 2360 A+ F H +I ++ DN V + D+GRG+P + V P+ GVEV +T+ AG Sbjct: 62 AIRTNFEHANQIEVVIKDNQVSVKDNGRGLPQGMVVTPE----GVEVPLPLAAWTRARAG 117 Query: 2359 GKFGGGSYTASGGLHGVGASVVNALSSRLDVEVDRGGKT 2243 F T G +GVG+++ N S E G T Sbjct: 118 SNFSADRKTI--GKNGVGSALTNFFSDSFVGETGNGTNT 154 >ref|NP_891577.1|topoisomerase II large subunit Length = 607 Score = 78.2 bits (191), Expect = 1e-13 Identities = 96/381 (25%), Positives = 152/381 (39%), Gaps = 6/381 (1%) Frame = -3 Query: 1735 GIGYDSTVRSFVNIISTPKGGTHQSGFEQALVKTFRKAVETNARKLKAGNDKIEKDDIFA 1556 G G+ S SF N + T GGTH L + K ++ K + K + + Sbjct: 258 GEGFKSV--SFANGLFTKNGGTHVDYVTDDLCEEIVKRIK------KEYKVDVTKAAVKS 309 Query: 1555 GLTAVLTVR-LAEPQFEGQTKEILGTSAVRAIVARVVEKEINAKLNSANRNDKAQSALLL 1379 GLT +L VR L +F+ QTKE L + R ++ + KL + ++ Sbjct: 310 GLTCILIVRELPNLRFDSQTKERLTNPT--GDIKRHIDLDFK-KLAKVIAKKENIIMPII 366 Query: 1378 EKIVSEMKSRISARVHKETQRRKNALETSSMPTKLADCRTDDVARSELFIVEGDSALGTA 1199 +++ ++ A K + K A + L TD A + LF+ EGDSA+ Sbjct: 367 AVVLARKEAADKAAATKAAKAAKRAKVAKHVKANLIG--TD--AETTLFLTEGDSAINYL 422 Query: 1198 KLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRSFDISAARYGKV 1019 R D P+RGK L + ++ NAE ++ + G G + +Y + Sbjct: 423 ISVRDQDLHGGFPLRGKTLTTWEQPEAKIVKNAEIFNIMAITGLQFGVD-ALDVMQYKNI 481 Query: 1018 ILMTDADVDG-AHIRTLLLTLFFRYMRPMIDEGRV-FAAVPPLHRVEVINAGQKANEMIY 845 +MTDAD DG I+ L++ F R+ + ++GR+ F P +I A K + + Sbjct: 482 AIMTDADTDGIGSIKPSLISFFARWPE-LFEDGRIRFIKTP------IIIAEPKKGDDVR 534 Query: 844 TYSEAELHVLLARLAKEGKRYKEPIQRYKGLGEMDAEQLAETTMDPRHRTLRKVGIENAK 665 Y + E ++ KG + LA T HR + +E Sbjct: 535 WYYDLE-------------DFENDRDNIKGYNIRYIKGLASLTESDYHRVINDPVMEIIT 581 Query: 664 QAE---ETFDLLMGSDVAPRK 611 E E FDLL D RK Sbjct: 582 LPENYKELFDLLYSEDADQRK 602 Score = 56.6 bits (135), Expect = 4e-07 Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 38/204 (18%) Frame = -3 Query: 2626 VLEGLEAVRKRPGMYIGSTDSR-----------------GLMHCLWEIIDNSVDEALA-- 2504 +L E V KR GMYIGST GL+ + EIIDNSVDEA+ Sbjct: 6 ILSDREHVLKRAGMYIGSTTYEEHQRFLFGKWTKISYVPGLVKIIDEIIDNSVDEAIRTN 65 Query: 2503 -GFGHDIKIILHADNSVEIHDDGRGIP---IDVEPKTGLTGVEVVFTKLHAGGKFGGGSY 2336 F + I + + +N V + D+GRGIP + T + +T+ AG F + Sbjct: 66 FEFANVISVDIQ-NNIVTVTDNGRGIPQHMVTTPEGTQIPQPVAAWTRTKAGSNF-DDTN 123 Query: 2335 TASGGLHGVGASVVNALS-----------SRLDVEVDRGGKTYKMSFRRGEPGRFKDPGT 2189 + G++GVG+S+ N S + + V+ G + S +P + K GT Sbjct: 124 RLTQGMNGVGSSLSNFFSDWFTGVTCDGETEMTVQCTNGAENITWS---SKPSKLK--GT 178 Query: 2188 KPDPAAAFEPF----VNDSVLDVV 2129 F+ F +++SVLD+V Sbjct: 179 NVTFCPDFDHFEGYMMDNSVLDIV 202 >ref|NP_112716.1|LYS Length = 429 Score = 72.8 bits (177), Expect = 6e-12 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 1/137 (0%) Frame = +2 Query: 72941 GVIPAASVSTALPASLRPAQPSAPAE-YTIARGDTISGIAGRYGLDTNAILKLNNLQANT 73117 G++ SV +QP+ PA+ Y + +GDT+SGIA +G + + + N+L Sbjct: 306 GIMSWLSVHDVETIDASTSQPTTPAKGYIVKQGDTLSGIASNWGTNWQELARQNSLSNPN 365 Query: 73118 IIYPGQKIKLTGXXXXXXXXXXXXXXXXXXXXXGSVYTVKSGDTLGAIAARHGVKLSEVL 73297 +IY GQ I+ TG YTV SGD L +IA+R G + ++ Sbjct: 366 VIYTGQVIRFTG---------------GQSGATARTYTVSSGDNLSSIASRLGTTVQSLV 410 Query: 73298 SWNGLNMNSIIYPGQKI 73348 S NG++ ++IY GQ + Sbjct: 411 SMNGISNPNLIYAGQTL 427 Score = 61.2 bits (147), Expect = 2e-08 Identities = 36/110 (32%), Positives = 55/110 (50%) Frame = +2 Query: 73226 YTVKSGDTLGAIAARHGVKLSEVLSWNGLNMNSIIYPGQKIKIGSGQXXXXXXXXXXXXX 73405 Y VK GDTL IA+ G E+ N L+ ++IY GQ I+ GQ Sbjct: 333 YIVKQGDTLSGIASNWGTNWQELARQNSLSNPNVIYTGQVIRFTGGQ------------- 379 Query: 73406 XXXXXNSGSYTVKSGDTLSAIAAKHGVKLSDILSANKLTMTSVIFPGNKL 73555 + +YTV SGD LS+IA++ G + ++S N ++ ++I+ G L Sbjct: 380 --SGATARTYTVSSGDNLSSIASRLGTTVQSLVSMNGISNPNLIYAGQTL 427 >ref|NP_996722.1|lysin Length = 429 Score = 71.2 bits (173), Expect = 2e-11 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 1/137 (0%) Frame = +2 Query: 72941 GVIPAASVSTALPASLRPAQPSAPAE-YTIARGDTISGIAGRYGLDTNAILKLNNLQANT 73117 G++ SV +QP+ PA+ Y + +GDT+SGIA G + + + N+L Sbjct: 306 GIMSWLSVHDVETIDASTSQPTTPAKSYIVKQGDTLSGIASNLGTNWQELARQNSLSNPN 365 Query: 73118 IIYPGQKIKLTGXXXXXXXXXXXXXXXXXXXXXGSVYTVKSGDTLGAIAARHGVKLSEVL 73297 +IY GQ I LTG YTV+SGD L +IA R G + ++ Sbjct: 366 MIYSGQVISLTG---------------GQSGATARTYTVQSGDNLSSIARRLGTTVQSLV 410 Query: 73298 SWNGLNMNSIIYPGQKI 73348 S NG++ ++IY GQ + Sbjct: 411 SMNGISNPNLIYAGQTL 427 Score = 59.7 bits (143), Expect = 5e-08 Identities = 36/110 (32%), Positives = 55/110 (50%) Frame = +2 Query: 73226 YTVKSGDTLGAIAARHGVKLSEVLSWNGLNMNSIIYPGQKIKIGSGQXXXXXXXXXXXXX 73405 Y VK GDTL IA+ G E+ N L+ ++IY GQ I + GQ Sbjct: 333 YIVKQGDTLSGIASNLGTNWQELARQNSLSNPNMIYSGQVISLTGGQ------------- 379 Query: 73406 XXXXXNSGSYTVKSGDTLSAIAAKHGVKLSDILSANKLTMTSVIFPGNKL 73555 + +YTV+SGD LS+IA + G + ++S N ++ ++I+ G L Sbjct: 380 --SGATARTYTVQSGDNLSSIARRLGTTVQSLVSMNGISNPNLIYAGQTL 427 >ref|NP_663692.1|putative lysin Length = 429 Score = 68.2 bits (165), Expect = 1e-10 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Frame = +2 Query: 72995 AQPSAPAE-YTIARGDTISGIAGRYGLDTNAILKLNNLQANTIIYPGQKIKLTGXXXXXX 73171 +QP+ PA+ + + GDT+SGIA +G + + + N+L +IY GQ I+ TG Sbjct: 324 SQPTTPAKTHIVQSGDTLSGIASNWGTNWQELARQNSLSNPNMIYTGQVIRFTGGQSGAT 383 Query: 73172 XXXXXXXXXXXXXXXGSVYTVKSGDTLGAIAARHGVKLSEVLSWNGLNMNSIIYPGQKI 73348 YTV SGD L +IA+R G + ++S NG++ ++IY GQ + Sbjct: 384 ---------------ARTYTVSSGDNLSSIASRLGTTVQSLVSMNGISNPNLIYAGQTL 427 Score = 58.5 bits (140), Expect = 1e-07 Identities = 35/110 (31%), Positives = 56/110 (50%) Frame = +2 Query: 73226 YTVKSGDTLGAIAARHGVKLSEVLSWNGLNMNSIIYPGQKIKIGSGQXXXXXXXXXXXXX 73405 + V+SGDTL IA+ G E+ N L+ ++IY GQ I+ GQ Sbjct: 333 HIVQSGDTLSGIASNWGTNWQELARQNSLSNPNMIYTGQVIRFTGGQ------------- 379 Query: 73406 XXXXXNSGSYTVKSGDTLSAIAAKHGVKLSDILSANKLTMTSVIFPGNKL 73555 + +YTV SGD LS+IA++ G + ++S N ++ ++I+ G L Sbjct: 380 --SGATARTYTVSSGDNLSSIASRLGTTVQSLVSMNGISNPNLIYAGQTL 427 >ref|NP_046572.1|ABC transporter Length = 705 Score = 68.2 bits (165), Expect = 1e-10 Identities = 49/183 (26%), Positives = 97/183 (53%), Gaps = 4/183 (2%) Frame = -1 Query: 28980 VLKGINAEVAEGEVVCVIGPSGSGKSTFLRCLNKLEDITGGHVTVDGFDVTDPKVDINEV 28801 +++ IN + + V +IG SG+GKSTF + L+KL + + ++G D+ + D + Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDIN--RYDHLSI 555 Query: 28800 RRHIGMVFQHFNLFPHMSVIENIMLAPVESGKQGKDEARASA----LKLLERVGLAEKAD 28633 R+ I + ++ LF ++ EN+ + + + ++ S + L++ + K Sbjct: 556 RKRIVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQ-YSYKLS 613 Query: 28632 ARPASLSGGQKQRVAIARALAMNPDIMLFDEATSALDPEMVGEVLQVIKDLARDGMTMVL 28453 ++LS GQKQR+A+ARA+ P +++ DE+ S +DP+ + + L R ++L Sbjct: 614 ENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPD---NTKLIYETLHRMDCLIIL 670 Query: 28452 VTH 28444 +TH Sbjct: 671 ITH 673 >ref|NP_108734.1|lysin Length = 428 Score = 67.4 bits (163), Expect = 2e-10 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Frame = +2 Query: 72995 AQPSAPAE-YTIARGDTISGIAGRYGLDTNAILKLNNLQANTIIYPGQKIKLTGXXXXXX 73171 +QP+ PA+ Y + +GDT+SGIA +G + + + N+L +IY GQ I TG Sbjct: 323 SQPTTPAKSYVVKQGDTLSGIASNWGTNWQELARQNSLSNPNMIYAGQVISFTG------ 376 Query: 73172 XXXXXXXXXXXXXXXGSVYTVKSGDTLGAIAARHGVKLSEVLSWNGLNMNSIIYPGQKI 73348 YTV+SGD L +IA G + ++S NG++ ++IY GQ + Sbjct: 377 ---------GQSGATARAYTVQSGDNLSSIAILLGTTVQSLVSMNGISNPNLIYAGQTL 426 Score = 58.2 bits (139), Expect = 1e-07 Identities = 36/110 (32%), Positives = 53/110 (48%) Frame = +2 Query: 73226 YTVKSGDTLGAIAARHGVKLSEVLSWNGLNMNSIIYPGQKIKIGSGQXXXXXXXXXXXXX 73405 Y VK GDTL IA+ G E+ N L+ ++IY GQ I GQ Sbjct: 332 YVVKQGDTLSGIASNWGTNWQELARQNSLSNPNMIYAGQVISFTGGQ------------- 378 Query: 73406 XXXXXNSGSYTVKSGDTLSAIAAKHGVKLSDILSANKLTMTSVIFPGNKL 73555 + +YTV+SGD LS+IA G + ++S N ++ ++I+ G L Sbjct: 379 --SGATARAYTVQSGDNLSSIAILLGTTVQSLVSMNGISNPNLIYAGQTL 426 >ref|NP_612994.1|hypothetical protein Length = 348 Score = 65.9 bits (159), Expect = 7e-10 Identities = 61/271 (22%), Positives = 109/271 (40%), Gaps = 10/271 (3%) Frame = +2 Query: 74264 RGGMSTVYLATDQRLERDVALKVLHPHLVNDGNFLDRLGREAKAAAKLSHAHVVGVLDQG 74443 +G S VYLA D+ L D+ +K + + D EA+ K +H ++V V Sbjct: 21 QGCFSKVYLAHDRHLAHDLVIKEIEK---KENTNHDDYFNEARLLYKHAHPNIVQVQYAA 77 Query: 74444 SDGHTAYLVMEYIKGHTLRDVIKEKGALSPRLALALIDPVVEXXXXXXXXXXIHRDIKPE 74623 Y+ M + +L ++K K L+ R + + +H DIKP Sbjct: 78 QCESNIYIAMPFYHNGSLNQLMK-KNNLTSREIIRYSIQFLSGLYHIHSKGLMHFDIKPN 136 Query: 74624 NVLIADDGRIKVGDFGLARAVTTSTSTGALIGTVAYLSPEL--VLGRQADARSDIYSVGI 74797 N++I++ + DFGL++ V + G ++ PE + + DIY G+ Sbjct: 137 NIMISNRNEAMLSDFGLSQLVNEESRAAPEFGYHFHVPPEYFSLSTNDYNFTYDIYQAGL 196 Query: 74798 MLYEMITGSQPFDGDVPIQVAYQHVNSSV--------EAPSAVVPGLAAEVDELVQWCTA 74953 +Y M G F+ + + + S+ E P P + ++ +V C Sbjct: 197 TIYRMCVGHDNFERERSAFSTIEQLRESIINGCYPLKEYP----PHIHKKLITIVNKCIH 252 Query: 74954 RDPEQRPVDGNALLSELRHIRTNLTDAELDL 75046 DP +R +L++L I + D L + Sbjct: 253 VDPNERYQSVLDVLNDLSAISDGVLDWRLQM 283 Score = 46.2 bits (108), Expect = 6e-04 Identities = 24/97 (24%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Frame = -3 Query: 21091 DVVRLQGAA--DGGLGLIMDYAAGGSLARLVSCRGPLSVGQTVTVLTPLAQALGYLHGKG 20918 ++V++Q AA + + + M + GSL +L+ + L+ + + L ++H KG Sbjct: 69 NIVQVQYAAQCESNIYIAMPFYHNGSLNQLMK-KNNLTSREIIRYSIQFLSGLYHIHSKG 127 Query: 20917 FMHSDVAPGNVLFTAHGKPLLADLGVTSMVGDAADSA 20807 MH D+ P N++ + + +L+D G++ +V + + +A Sbjct: 128 LMHFDIKPNNIMISNRNEAMLSDFGLSQLVNEESRAA 164 >ref|NP_049482.1|serine Length = 348 Score = 65.9 bits (159), Expect = 7e-10 Identities = 61/271 (22%), Positives = 109/271 (40%), Gaps = 10/271 (3%) Frame = +2 Query: 74264 RGGMSTVYLATDQRLERDVALKVLHPHLVNDGNFLDRLGREAKAAAKLSHAHVVGVLDQG 74443 +G S VYLA D+ L D+ +K + + D EA+ K +H ++V V Sbjct: 21 QGCFSKVYLAHDRHLAHDLVIKEIEK---KENTNHDDYFNEARLLYKHAHPNIVQVQYAA 77 Query: 74444 SDGHTAYLVMEYIKGHTLRDVIKEKGALSPRLALALIDPVVEXXXXXXXXXXIHRDIKPE 74623 Y+ M + +L ++K K L+ R + + +H DIKP Sbjct: 78 QCESNIYIAMPFYHNGSLNQLMK-KNNLTSREIIRYSIQFLSGLYHIHSKGLMHFDIKPN 136 Query: 74624 NVLIADDGRIKVGDFGLARAVTTSTSTGALIGTVAYLSPEL--VLGRQADARSDIYSVGI 74797 N++I++ + DFGL++ V + G ++ PE + + DIY G+ Sbjct: 137 NIMISNRNEAMLSDFGLSQLVNEESRAAPEFGYHFHVPPEYFSLSTNDYNFTYDIYQAGL 196 Query: 74798 MLYEMITGSQPFDGDVPIQVAYQHVNSSV--------EAPSAVVPGLAAEVDELVQWCTA 74953 +Y M G F+ + + + S+ E P P + ++ +V C Sbjct: 197 TIYRMCVGHDNFERERSAFSTIEQLRESIINGCYPLKEYP----PHIHKKLITIVNKCIH 252 Query: 74954 RDPEQRPVDGNALLSELRHIRTNLTDAELDL 75046 DP +R +L++L I + D L + Sbjct: 253 VDPNERYQSVLDVLNDLSAISDGVLDWRLQM 283 Score = 46.2 bits (108), Expect = 6e-04 Identities = 24/97 (24%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Frame = -3 Query: 21091 DVVRLQGAA--DGGLGLIMDYAAGGSLARLVSCRGPLSVGQTVTVLTPLAQALGYLHGKG 20918 ++V++Q AA + + + M + GSL +L+ + L+ + + L ++H KG Sbjct: 69 NIVQVQYAAQCESNIYIAMPFYHNGSLNQLMK-KNNLTSREIIRYSIQFLSGLYHIHSKG 127 Query: 20917 FMHSDVAPGNVLFTAHGKPLLADLGVTSMVGDAADSA 20807 MH D+ P N++ + + +L+D G++ +V + + +A Sbjct: 128 LMHFDIKPNNIMISNRNEAMLSDFGLSQLVNEESRAA 164 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 58.5 bits (140), Expect = 1e-07 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 4/146 (2%) Frame = +2 Query: 73643 VVSSANQNKALLNSSPVPTREQMKSIVADTARRMGVDPSLALAFAYQESGFDQRAVSPAN 73822 +V+S + +S+ + S + A + VDP+L A QESGF+ +A S Sbjct: 1400 IVTSTTSSGGTPSSTGGSYSGKYSSYINSAASKYNVDPALIAAVIQQESGFNAKARSGVG 1459 Query: 73823 AIGTMQVIPTSGEWASDLVGRKLNLLDPYDNATAGVA-IIRQLIRTSKDLDNAIAGYYQG 73999 A+G MQ++P + + N DPY N G + +QL + +++ A+A Y G Sbjct: 1460 AMGLMQLMPATAKSLG-----VNNAYDPYQNVMGGTKYLAQQLEKFGGNVEKALAAYNAG 1514 Query: 74000 QYSVSKNG---MFDDTKAYVAAIKAH 74068 +V K G F +T+ YV I A+ Sbjct: 1515 PGNVIKYGGIPPFKETQNYVKKIMAN 1540 >ref|YP_164723.1|orf88 Length = 464 Score = 50.8 bits (120), Expect = 2e-05 Identities = 24/43 (55%), Positives = 30/43 (69%) Frame = +2 Query: 73226 YTVKSGDTLGAIAARHGVKLSEVLSWNGLNMNSIIYPGQKIKI 73354 YTVKSGD+ IA HG +S + S NGL+M S IYPGQ ++I Sbjct: 421 YTVKSGDSFWKIANDHGTTISNLTSLNGLSMYSTIYPGQSLRI 463 Score = 44.7 bits (104), Expect = 0.002 Identities = 22/43 (51%), Positives = 28/43 (65%) Frame = +2 Query: 73433 YTVKSGDTLSAIAAKHGVKLSDILSANKLTMTSVIFPGNKLVI 73561 YTVKSGD+ IA HG +S++ S N L+M S I+PG L I Sbjct: 421 YTVKSGDSFWKIANDHGTTISNLTSLNGLSMYSTIYPGQSLRI 463 >ref|NP_049618.1|gp60 topoisomerase II, large subunit, C-terminal region Length = 160 Score = 48.9 bits (115), Expect = 9e-05 Identities = 43/152 (28%), Positives = 68/152 (44%) Frame = -3 Query: 1057 RSFDISAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMIDEGRVFAAVPPLHRVEVI 878 RS S+ Y V +MTDAD DG L FF + ++GR+ P+ +I Sbjct: 24 RSIKSSSMNYANVAIMTDADHDGLGSIYPSLLGFFSNWPELFEQGRIRFVKTPV----II 79 Query: 877 NAGQKANEMIYTYSEAELHVLLARLAKEGKRYKEPIQRYKGLGEMDAEQLAETTMDPRHR 698 K E YT +E E + + K I+ KGLG ++ + E +P + Sbjct: 80 AQVGKKQEWFYTVAEYE--------SAKDALPKHSIRYIKGLGSLEKSEYREMIQNPVYD 131 Query: 697 TLRKVGIENAKQAEETFDLLMGSDVAPRKDFI 602 ++ EN K E F++LMG + RK+++ Sbjct: 132 VVKLP--ENWK---ELFEMLMGDNADLRKEWM 158 >ref|NP_818590.1|gp52 Length = 64 Score = 46.6 bits (109), Expect = 4e-04 Identities = 22/35 (62%), Positives = 25/35 (71%) Frame = +3 Query: 2910 RTLNALDRCDRCGAQAYVRVVLESSGGELLFCGHH 3014 RTL DRCDRC A A V + L+S GEL+FCGHH Sbjct: 9 RTLTRADRCDRCSAAATVALQLKS--GELMFCGHH 41 >ref|NP_817967.1|gp116 Length = 59 Score = 45.4 bits (106), Expect = 0.001 Identities = 19/32 (59%), Positives = 23/32 (71%) Frame = +3 Query: 2925 LDRCDRCGAQAYVRVVLESSGGELLFCGHHAR 3020 L RCDRCGA A V++ S +LLFCGHHA+ Sbjct: 8 LTRCDRCGAAAKFEVLVPSVASKLLFCGHHAK 39 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 43.1 bits (100), Expect = 0.005 Identities = 41/135 (30%), Positives = 55/135 (40%), Gaps = 6/135 (4%) Frame = -1 Query: 57765 QRRGDRSGGVAVHGSTQAGHVRRHRGLPDVRPLARQRGLAQAPGLAGDRRSLRAPGPRSP 57586 Q R D+ GG A G G R +G P +P +RG Q G+ G RSL G R Sbjct: 480 QGRADQDGGGAHQGVEVLGGRGRLQGHPAGQP---ERGAVQHVGVPGPGRSLARSGQRQR 536 Query: 57585 DRHQ------YQRQPELDRIRRHHLPAVRSGQARPGTLDGHRAGGQGKTAPPLAARGGSG 57424 R + QP+ R+RR+ V HR + +TA + GG G Sbjct: 537 GRRRNAISLCRHEQPDQHRLRRNADQRV------------HREDAERRTAGADRSGGGEG 584 Query: 57423 PSCRRRHHRAGPGRQ 57379 P HR+ GR+ Sbjct: 585 PGA---VHRSASGRR 596 >ref|NP_944303.1|conserved phage mega protein Length = 4602 Score = 42.4 bits (98), Expect = 0.008 Identities = 61/209 (29%), Positives = 82/209 (39%), Gaps = 12/209 (5%) Frame = +2 Query: 73508 ANKLTMTSV-IFPGNKLVIPGASIQPAASVTPLVPSSFLGFTYPAAVVSSANQNKALLNS 73684 AN L+ S+ FPG + QPAA + V PAA S Sbjct: 23 ANDLSRLSLPSFPGTPATNTQTTQQPAAPASASVA--------PAAT------------S 62 Query: 73685 SPVPTREQMKSIVADTARRMGVDPSLAL-AFAYQESGFDQRAVSPANAIGTMQVIPTSGE 73861 P PTR+ V A+ +GVDP AL F + SG S A+G MQV+P + Sbjct: 63 RPAPTRDD----VTRRAQELGVDPKFALEIFNLESSGNFGTRDSNKGAVGGMQVMP---D 115 Query: 73862 WASDLVGRKLNLLDPYDNATAGVAIIRQLIRTSKDLDNAI--AGYYQGQYSVS-KNGMFD 74032 ++G D ++N AG+ I + D A+ AGY G S K G Sbjct: 116 TYKAMMGTYAGQRDAWNNLEAGLRYIAYGQKKLGTTDPALLAAGYQSGYDRASLKRGEIP 175 Query: 74033 D-------TKAYVAAIKAHKKNFS*TAPA 74098 + T+AY A I + TA A Sbjct: 176 NTTDGGMTTRAYAARIASRVGTGGATAAA 204 >ref|NP_690779.1|ORF46 Length = 300 Score = 42.4 bits (98), Expect = 0.008 Identities = 19/46 (41%), Positives = 31/46 (67%) Frame = +2 Query: 73217 GSVYTVKSGDTLGAIAARHGVKLSEVLSWNGLNMNSIIYPGQKIKI 73354 G+ YTVK GDTL IA + GV ++++ ++NG+ + I GQ +K+ Sbjct: 167 GATYTVKKGDTLSEIAVKTGVSMAKLQAYNGIKNANKITVGQVLKL 212 Score = 39.3 bits (90), Expect = 0.069 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Frame = +2 Query: 73430 SYTVKSGDTLSAIAAKHGVKLSDILSANKLTMTSVIFPGNKLVIPGA--SIQPAAS 73591 +YTVK GDTLS IA K GV ++ + + N + + I G L + GA S +P++S Sbjct: 169 TYTVKKGDTLSEIAVKTGVSMAKLQAYNGIKNANKITVGQVLKLTGAAGSSKPSSS 224 >ref|YP_025045.1|putative lysin protein Length = 393 Score = 41.2 bits (95), Expect = 0.018 Identities = 17/43 (39%), Positives = 31/43 (72%) Frame = +2 Query: 73226 YTVKSGDTLGAIAARHGVKLSEVLSWNGLNMNSIIYPGQKIKI 73354 YTV+SGD+ IA+++G+ + + + NG ++ S+IYPG+ + I Sbjct: 350 YTVRSGDSFWNIASKYGISMYTLAANNGKSIYSLIYPGESLYI 392 Score = 38.5 bits (88), Expect = 0.12 Identities = 17/43 (39%), Positives = 29/43 (67%) Frame = +2 Query: 73433 YTVKSGDTLSAIAAKHGVKLSDILSANKLTMTSVIFPGNKLVI 73561 YTV+SGD+ IA+K+G+ + + + N ++ S+I+PG L I Sbjct: 350 YTVRSGDSFWNIASKYGISMYTLAANNGKSIYSLIYPGESLYI 392 >ref|NP_542296.1|unknown Length = 111 Score = 40.8 bits (94), Expect = 0.024 Identities = 30/73 (41%), Positives = 34/73 (46%) Frame = -2 Query: 85931 PPCPRCFLNCCPWRPGAGPRTTSPCGSSAKIPGTGLRRCARHCPTSACRCSSGAATPWAT 85752 P P C L P RPGA TT P G RRC R SA CS+ P Sbjct: 18 PLSPACSLASVPTRPGALTTTTLPA-----FRPIGPRRC-RARRASAITCST---IPSPG 68 Query: 85751 RPTPRKSPRHSST 85713 RP PR+ PRHS++ Sbjct: 69 RPGPRRRPRHSAS 81 >ref|NP_040733.1|morphogenesis protein B Length = 258 Score = 40.4 bits (93), Expect = 0.031 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 2/98 (2%) Frame = +2 Query: 73226 YTVKSGDTLGAIAARHGVKLSEVLSWN-GLNMNSIIYPGQKIKI-GSGQXXXXXXXXXXX 73399 Y VKSGD L IA +H ++ +L N + ++I GQ I + GSG Sbjct: 163 YKVKSGDNLTKIAKKHNTTVATLLKLNPSIKDPNMIRVGQTINVTGSG------------ 210 Query: 73400 XXXXXXXNSGSYTVKSGDTLSAIAAKHGVKLSDILSAN 73513 ++ VKSGDTLS IA + +S ++S N Sbjct: 211 --------GKTHKVKSGDTLSKIAVDNKTTVSRLMSLN 240 Score = 40.0 bits (92), Expect = 0.041 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 2/115 (1%) Frame = +2 Query: 73016 EYTIARGDTISGIAGRYGLDTNAILKLN-NLQANTIIYPGQKIKLTGXXXXXXXXXXXXX 73192 +Y + GD ++ IA ++ +LKLN +++ +I GQ I +TG Sbjct: 162 KYKVKSGDNLTKIAKKHNTTVATLLKLNPSIKDPNMIRVGQTINVTGSG----------- 210 Query: 73193 XXXXXXXXGSVYTVKSGDTLGAIAARHGVKLSEVLSWNGLNMN-SIIYPGQKIKI 73354 G + VKSGDTL IA + +S ++S N N + I GQ I++ Sbjct: 211 --------GKTHKVKSGDTLSKIAVDNKTTVSRLMSLNPEITNPNHIKVGQTIRL 257 >ref|YP_164756.1|orf121 Length = 193 Score = 39.3 bits (90), Expect = 0.069 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 4/106 (3%) Frame = +2 Query: 73439 VKSGDTLSAIAAKHGVKLSDILSANKLTMTSVIFPGNKLVIPGASIQPAASVTPLVPSSF 73618 V GDTLS +A+K+G I S N L+ ++IF G+KL + + Sbjct: 3 VNQGDTLSELASKYGTTSDKIASDNNLSNPNLIFVGDKLEVGSVKEEN------------ 50 Query: 73619 LGFTYPAAVVSSANQNKALLNSSPVPTR----EQMKSIVADTARRM 73744 T P V +S N + +S P + EQ ++ DT M Sbjct: 51 ---TQPTKVTTSTEANNTVASSYSQPEKASSAEQPQASAKDTQSSM 93 Score = 36.6 bits (83), Expect = 0.45 Identities = 15/43 (34%), Positives = 28/43 (65%) Frame = +2 Query: 73232 VKSGDTLGAIAARHGVKLSEVLSWNGLNMNSIIYPGQKIKIGS 73360 V GDTL +A+++G ++ S N L+ ++I+ G K+++GS Sbjct: 3 VNQGDTLSELASKYGTTSDKIASDNNLSNPNLIFVGDKLEVGS 45 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 38.1 bits (87), Expect = 0.15 Identities = 76/262 (29%), Positives = 91/262 (34%), Gaps = 16/262 (6%) Frame = -1 Query: 34302 RYERLLRSRCRIPAVQNGQTVHRGHPQARPRIHGRDQPVRELVQAAVGRRRSAELPELGP 34123 R++ R R P + R HP+A R+ R P R RS + PE P Sbjct: 2 RFDARRLRRARPPHTRTPAPRTRAHPRAHRRVRTRPHP-----HLGPARDRSPDHPE--P 54 Query: 34122 QQPI-RAGARPAVQAGQGPVRAH*IPRHR---FRGQPLPRL------CGAAGSRAQGHRR 33973 P RA +RPA + P A PR R P P + C A A + Sbjct: 55 DHPCRRAPSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAP 114 Query: 33972 GL---*DSCRRRGRYLVTELGRAPRHGTRSAARQPA*RDQGHGGFRTHAADPR*AGLRVL 33802 L C R +L T RAPR TR+ P R RT D R R Sbjct: 115 ALRPRAPECDRGAHHLRT---RAPRTRTRAVPLGPGAR------VRTPVEDRRRTRRRRR 165 Query: 33801 PAQQARRMAGLPSPGDALRAAAQSRHFVRGNGEPCPSPDL--RRFQ*PGKGGAVPGCPGT 33628 P + R L R A + VR P P RR P AV T Sbjct: 166 PDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRT 225 Query: 33627 G-RHRPGGALRGLPPCRQPRHR 33565 G RHR +LR PRHR Sbjct: 226 GRRHRRRASLR-------PRHR 240 >ref|NP_542287.1|unknown Length = 224 Score = 37.7 bits (86), Expect = 0.20 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = -3 Query: 33241 TWRSKICVPPIRWTLCPLPAPNWPTSPVRPSKRPWRYPGPKQASSSMRRRSPT-SGWPSS 33065 T+RS C+P + CP P TS +RP+ W P + AS + SPT W S Sbjct: 5 TYRSSTCIPASSISPCPAPVIITCTSRMRPT---WTRPERRCASPTRSAASPTFRRWTRS 61 Query: 33064 AW 33059 AW Sbjct: 62 AW 63 >ref|NP_039696.1|predicted 21.3kd protein Length = 220 Score = 37.4 bits (85), Expect = 0.26 Identities = 28/70 (40%), Positives = 36/70 (51%) Frame = +1 Query: 38713 TATGGPGGSIVNISSTATKAGSPGTWAHYAASKGAVDVLTVGLASEVAAQGIRVNCVAPG 38892 TATGGPGGS+++I S A K SPG + D L +G A + +A G N APG Sbjct: 147 TATGGPGGSVIDILSVAGK--SPGDRTYN-------DQLYIGGAQQNSAGG---NGNAPG 194 Query: 38893 STNTGLHAAA 38922 G +A Sbjct: 195 GGGAGAQVSA 204 >ref|NP_570367.1|collagen alpha 1(I) chain precursor Length = 302 Score = 37.4 bits (85), Expect = 0.26 Identities = 40/138 (28%), Positives = 53/138 (38%), Gaps = 10/138 (7%) Frame = -3 Query: 23881 VDSDVG-QDARQPLAFGVDEGPDPVGGAFADKHDAGT-----ADGAEDGVLGAGVDRDRL 23720 VD VG Q P D GP G ++ G ADGA+ G+ ++ Sbjct: 17 VDGAVGPQGPEGPQGLQGDTGPQGPQGLQGEQGLQGPQGLPGADGADGAQGPQGIQGEQG 76 Query: 23719 VLGDPSALQRAQGG----PGSAGLVFDLGESGPFSAAREDEGGGQQPKGDADDQARDPVV 23552 + G P L A G PG G D G++G + G Q PKGD D + Sbjct: 77 LQG-PQGLPGADGADSTVPGPQGPKGDKGDTG--------DAGPQGPKGDTGDAGPQGLK 127 Query: 23551 EEEAHKEADGYDSKEGEQ 23498 + + ADG EG Q Sbjct: 128 GDPGNDGADGATGPEGPQ 145 >ref|YP_164052.1|hypothetical protein Length = 163 Score = 37.4 bits (85), Expect = 0.26 Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Frame = +3 Query: 29418 RQHARHP--DVDGLAGQLGNAEIEEEGPDQQRGSPEDADEGGGDPAQHHAGGDLQEPHEE 29591 RQHA P D DG AE PD++ G P DPA+ + GD QEP Sbjct: 100 RQHAAAPLPDRDGAFATYRPAEHPPASPDRRLGRP--------DPARDQSTGDAQEPQTP 151 Query: 29592 ADQHGQGEGNRG 29627 + Q G+RG Sbjct: 152 SASTHQEPGDRG 163 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 477,587,227 Number of Sequences: 14420 Number of extensions: 10398562 Number of successful extensions: 39952 Number of sequences better than 0.5: 34 Number of HSP's better than 0.5 without gapping: 9457 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 39743 length of database: 3,019,461 effective HSP length: 121 effective length of database: 1,274,641 effective search space used: 41422008577 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig33 (54,114 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046670.1|similar to Escherichia coli YedG 178 5e-44 ref|NP_817941.1|gp90 110 2e-23 ref|NP_050655.1|Gin 100 2e-20 ref|YP_164331.1|hypothetical protein 94 2e-18 ref|YP_006499.1|Cin 77 2e-13 ref|YP_164394.1|DEAD box family helicase 52 6e-06 ref|NP_445687.1|putative helicase 52 8e-06 ref|YP_164758.1|orf123 50 2e-05 ref|NP_046572.1|ABC transporter 49 4e-05 ref|NP_813744.2|integrase 49 5e-05 ref|NP_690785.1|site-specific recombinase for integration and ex... 49 5e-05 ref|NP_542568.1|putative methyltransferase-endonuclease 45 7e-04 ref|NP_680515.1|putative helicase 45 0.001 ref|YP_024839.1|Pas53 45 0.001 ref|NP_511031.1|helicase 43 0.003 ref|YP_195146.1|DNA helicase UvsW 43 0.003 ref|NP_944130.1|UvsW RNA-DNA and DNA-DNA helicase 43 0.003 ref|NP_569809.1|hypothetical protein 42 0.005 ref|NP_861886.1|UvsW RNA-DNA and DNA-DNA helicase, ATPase 42 0.006 ref|NP_112664.1|INT 41 0.014 ref|NP_050128.1|putative DEAH-family helicase 41 0.014 ref|NP_817811.1|gp50 40 0.018 ref|NP_620626.1|putative transposase 40 0.023 ref|NP_047971.2|gp26 40 0.023 ref|NP_795616.1|putative helicase 39 0.040 ref|NP_943831.1|gp53 39 0.040 ref|NP_695088.1|putative helicase 39 0.052 ref|NP_049999.1|putative helicase 39 0.052 ref|NP_049952.1|putative helicase 39 0.052 ref|NP_056709.1|putative helicase 39 0.052 ref|NP_680502.1|integrase 39 0.052 ref|NP_795446.1|putative DEAD box family helicase 39 0.068 ref|NP_076780.1|integrase 39 0.068 ref|NP_944303.1|conserved phage mega protein 38 0.089 ref|NP_852574.1|Collagen triple helix repeat protein 38 0.089 ref|NP_536415.1|putative chromosome partitioning protein 38 0.12 ref|NP_945099.1|gp68 37 0.20 ref|NP_049421.1|putative helicase 36 0.34 ref|NP_944342.1|gp33 36 0.34 ref|NP_795429.1|putative integrase 36 0.44 >ref|NP_046670.1|similar to Escherichia coli YedG Length = 224 Score = 178 bits (451), Expect = 5e-44 Identities = 95/233 (40%), Positives = 145/233 (62%), Gaps = 2/233 (0%) Frame = -2 Query: 39419 MCGRYVMSKATGDLLSQFEAKEI--EGSPPPPSWNVAPTQDVPIIAERLDEGAMDRRLLI 39246 MCGR+ + D++ QF + EG P S+NVAP+Q++ I +++G+ + RL Sbjct: 1 MCGRFTLFSEFDDIIEQFNIDQFLPEGEYHP-SYNVAPSQNILTI---INDGS-NNRLGK 55 Query: 39245 ARWGLVPSWAKDIKIGSKLINARSESILDKPSFRKAAVKRRALVPAEGYYEWQKTEDGKK 39066 RWGL+P WAKD KIG K+INAR+E++ +KPSFRK V +R ++PA+ +YEW++ + K Sbjct: 56 LRWGLIPPWAKDEKIGYKMINARAETLSEKPSFRKPLVSKRCIIPADSFYEWKRLDPKTK 115 Query: 39065 IPNYLYSENENVLAFAGLYEFWPDPSLPEDDPHRWLLSCTVLTTTAHDSLGHVHDRAPVI 38886 IP + ++ N+ AFAGLYE W + PE +P L +CT++TT ++ + +HDR PVI Sbjct: 116 IPMRIKLKSSNLFAFAGLYEKW---NTPEGNP---LYTCTIITTKPNELMEDIHDRMPVI 169 Query: 38885 IPPGMYAQWLDPDTTDKEKVQEILDAIPEPVLTPRVVTDRVNSVRNNGPELIE 38727 + +WL+P TD + +Q +L + V+ VNS +NN PELIE Sbjct: 170 LTDENEKEWLNPKNTDPDYLQSLLQPYDADDMEAYQVSSLVNSPKNNSPELIE 222 >ref|NP_817941.1|gp90 Length = 502 Score = 110 bits (274), Expect = 2e-23 Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 1/151 (0%) Frame = -1 Query: 31632 LDPATLTVDVNVRKDAALTPDFIASIKEHGVMEPVIAHRKDDGTVHVLMGQRRTRAAVEA 31453 +DP L ++ NVR +A+LT F+ASIKE+GV+ P+ A R +DG +HV GQRRT AA EA Sbjct: 13 VDPNELVLEANVRTEASLTKQFVASIKENGVIVPITAVRGEDGVLHVRAGQRRTLAAREA 72 Query: 31452 QRPLIPVMIIDSP-EEAERIVTQVVENIQRAELTEADEADAYHQLSLIGVSATAIAKKTG 31276 + +PV +I + + A R+V Q+ EN QR EL E D L G+S T +AK+ Sbjct: 73 ELTEVPVYVIPAELDTATRLVQQITENDQRLELGEPDRVKGIQMLLDAGLSVTKVAKRLS 132 Query: 31275 RTKTTVESALKVKSSDAGAAALRKGWTIEEA 31183 + V+ A V S +L +G T+ EA Sbjct: 133 VSSEKVKHAKAVSESSLAMESLTEGATLAEA 163 Score = 72.8 bits (177), Expect = 3e-12 Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 3/166 (1%) Frame = -1 Query: 30813 DGGRPAQKGPMTEEQKA--ERKTLIENNKAMLSAQVVRREFVTGLLSKKQPPKGWQYFTV 30640 +G R + E+ KA ERK ++ NKA +A VRREFV LL +K PP+G F Sbjct: 339 EGSRLESSEDLAEKAKAREERKRVVALNKAGDAAMAVRREFVASLLKRKTPPEGAARFVA 398 Query: 30639 HAITHHPETASGYDG-EVAAGMVGAKVDEPKTWAWNPLRTHVAKSTARPEFSLIALICAG 30463 +T + G EVA ++GA+V L H S R + ++ L Sbjct: 399 EVLTQDGTLLGSHRGDEVAGELLGAEVRS------GVLLDHA--SDGRAQVVVLGLTLGA 450 Query: 30462 YEKTVAKDSWRSPSQTHRDYLNQLVLWGYKASTVEQLIIDSDKPAE 30325 E +K +WRSP YL L GY S +E+++I AE Sbjct: 451 IEAQTSKSAWRSPGGWTEKYLRFLAEHGYGLSPIEKVMIGEMTQAE 496 >ref|NP_050655.1|Gin Length = 193 Score = 99.8 bits (247), Expect = 2e-20 Identities = 67/175 (38%), Positives = 91/175 (52%) Frame = -3 Query: 47065 VIGYARVSTRGQSLDAQVDALVAAGAIKVFMEHASGATQARARWQDCLEHLQPGNILVVT 46886 +IGY RVST Q+ D Q +ALV AG ++F + SG R + L+ LQ G+ LVV Sbjct: 2 LIGYVRVSTNDQNTDLQRNALVCAGCEQIFEDKLSGTRTDRPGLKRALKRLQKGDTLVVW 61 Query: 46885 DLTRLGRSTADLSDIVTVLGRRGIGFRSLAEPWLDTTSAHGKLIFDMFASLAEYERSRLS 46706 L RLGRS L +V L RGI FRSL + +DT+S G+ F + +LAE ER + Sbjct: 62 KLDRLGRSMKHLISLVGELRERGINFRSLTDS-IDTSSPMGRFFFHVMGALAEMERELII 120 Query: 46705 EXXXXXXXXXXXXXXXXXRPTAMTPAKLEAAKDLRRQGKKLQEIAETLSVSMSTL 46541 E RP +T A+ E A L QG +++A V++STL Sbjct: 121 ERTMAGLAAARNKGRIGGRPPKLTKAEWEQAGRLLAQGIPRKQVALIYDVALSTL 175 >ref|YP_164331.1|hypothetical protein Length = 228 Score = 93.6 bits (231), Expect = 2e-18 Identities = 74/238 (31%), Positives = 114/238 (47%), Gaps = 6/238 (2%) Frame = -2 Query: 39419 MCGRYVMSKATG-----DLLSQFEAKEIEGSPPPPSWNVAPTQDVPIIAERLDEGAMDRR 39255 MCGR +S+ TG D LS +NVAP+ V + RL+ A+ + Sbjct: 1 MCGR--LSQYTGMHEFVDALSMPNVLVNLVGEQSERYNVAPSTAVTTL--RLEGDALVAQ 56 Query: 39254 LLIARWGLVPSWAKDIKIGSKLINARSESILDKPSFRKAAVKRRALVPAEGYYEWQKTED 39075 + RWG P WA+D + INAR E + F AA + RAL P G++EW Sbjct: 57 PI--RWGWRPFWARD---RAAPINARVEKVAHGRFF-SAAWRHRALCPVSGWFEWVAEGG 110 Query: 39074 GKKIPNYLYSENENVLAFAGLYEFWPDPSLPEDDPHRWLLSCTVLTTTAHDSLGHVHDRA 38895 +K P ++ + + + A + +F P L ++ + ++T + + +HDR Sbjct: 111 PRKQPFHIQHRDGSPILCAAIGQF---PGLDDEPGEQH--GFVIITADSAGGMVDIHDRR 165 Query: 38894 PVIIPPGMYAQWLDPDTTDKEKVQEIL-DAIPEPVLTPRVVTDRVNSVRNNGPELIEP 38724 PV++PP + +W+DP TT + Q +L P T V V +VRN GP+LIEP Sbjct: 166 PVVLPPELAREWIDPATTPERAEQIVLHQGEPSESFTWYAVDPAVGNVRNQGPQLIEP 223 >ref|YP_006499.1|Cin Length = 186 Score = 77.0 bits (188), Expect = 2e-13 Identities = 50/121 (41%), Positives = 67/121 (55%) Frame = -3 Query: 47065 VIGYARVSTRGQSLDAQVDALVAAGAIKVFMEHASGATQARARWQDCLEHLQPGNILVVT 46886 +IGY RVST Q+ Q +AL +AG +F + ASG R + L L G+ LVV Sbjct: 2 LIGYVRVSTNEQNTALQRNALESAGCELIFEDKASGKKAERPGLKKVLRMLSRGDTLVVW 61 Query: 46885 DLTRLGRSTADLSDIVTVLGRRGIGFRSLAEPWLDTTSAHGKLIFDMFASLAEYERSRLS 46706 L RLGRS L +V L RGI FRSL + +DT++ G+ F + +LAE ER + Sbjct: 62 KLDRLGRSMRHLVVLVEELRDRGINFRSLTDS-IDTSTPMGRFFFHVMGALAEMERELIV 120 Query: 46705 E 46703 E Sbjct: 121 E 121 >ref|YP_164394.1|DEAD box family helicase Length = 526 Score = 52.0 bits (123), Expect = 6e-06 Identities = 98/419 (23%), Positives = 152/419 (36%), Gaps = 7/419 (1%) Frame = +3 Query: 39990 RKYQRDAIDDVITGFQTSDRGKL-IMACGTGKTYTSLKIVEEMVPVGGTALFLVPSIALL 40166 R YQ+DA + + + +R L ++ G GKT K++E+ V G L L LL Sbjct: 4 RDYQQDARESIQAEWDKGNRKTLLVLPTGCGKTIVFSKVIEDRVKKGERVLVLAHRGELL 63 Query: 40167 QQTLNEWTAQATVPLRPLAVCSDTKVGRREHEDVSVHDLAFPATTDPQKLFYRTSISTGQ 40346 +Q ++ L + K + E S+ ++R + + Q Sbjct: 64 EQAADK-----------LEKSTGLKTATEKAEQTSLGS------------WFRVVVGSVQ 100 Query: 40347 EAVTVVFSTYQSIDVIAQAQALGLPD--FDVILCDEAHRTTGITEAEHDDSAFVRVHDQA 40520 ++ + + + P FD I+ DEAH ++ RV Sbjct: 101 T-------------LMREKRLMQFPKDFFDTIIIDEAHHCVS--------DSYQRVLQ-- 137 Query: 40521 YLRAKKRLYMTATPRIYVQDSKAKAAENDVAVYSMDDVAVYGPEFHHLGFG----KAVEM 40688 Y + L +TATP D+ G F L F KA++ Sbjct: 138 YFDSANVLGVTATP-------------------DRSDMRNLGSYFESLAFEYTLPKAIKE 178 Query: 40689 GHLSDYKVLVLAVNEEAVSRSFQGLFQENGDLSLDDAARIVGCWNGLSKRGVNGERLSIG 40868 G+LS K L + + + G+ Q+ GD AA +G + E + Sbjct: 179 GYLSPIKALTIPLELD-----LSGVGQQAGDF----AAGQLGSALDPYLESIADEMAKVA 229 Query: 40869 DTSPMNRAVAFARNIKESKKLAEQFELIGRQLLVEDDDALKLEAEHVDGTFNVLERSAKL 41048 + V F +K S+K E G +A V+G +R+ L Sbjct: 230 KD---RKTVVFLPLVKTSQKFTELLNKKG------------FKAAEVNGDSK--DRAEIL 272 Query: 41049 DWLQDETKGNVCRILSNAKCLTEGVDVPSLDAVLFLNPRNSQVDVVQAVGRVMRRSEGK 41225 + D K NV L N+ LTEG D PS+D V+ L P + Q VGR R GK Sbjct: 273 EDF-DNDKYNV---LCNSMLLTEGWDCPSVDCVVVLRPTKVRSLYSQMVGRGTRLHPGK 327 >ref|NP_445687.1|putative helicase Length = 559 Score = 51.6 bits (122), Expect = 8e-06 Identities = 35/117 (29%), Positives = 58/117 (49%) Frame = +3 Query: 40893 VAFARNIKESKKLAEQFELIGRQLLVEDDDALKLEAEHVDGTFNVLERSAKLDWLQDETK 41072 + R I +KKLAE G + A+ V + ER K++ L++E Sbjct: 427 LVIVRRIAIAKKLAEIMRENG------------IIADWVSSKTKLEERMEKIEALKNEK- 473 Query: 41073 GNVCRILSNAKCLTEGVDVPSLDAVLFLNPRNSQVDVVQAVGRVMRRSEGKEYGYII 41243 ++L + EG+D+P+L V+ L S++ ++Q +GRVMR S+ K GYI+ Sbjct: 474 ---LQVLISTSLADEGLDIPNLRLVVLLTQGKSRIKLIQRIGRVMRVSQNKRKGYIL 527 >ref|YP_164758.1|orf123 Length = 599 Score = 50.4 bits (119), Expect = 2e-05 Identities = 54/240 (22%), Positives = 98/240 (40%), Gaps = 7/240 (2%) Frame = +3 Query: 40542 LYMTATPRIYVQDSKAKAAENDVAVYSMDDVAVYGPEFHHLGFGKAVEMGHLSDYKVLVL 40721 L A RI + + K+ END+ Y G + + ++MG + ++ + Sbjct: 352 LMNNARMRIGMSGTVPKSKENDINAY-------LGDQLSDITNDSMIKMGVSTPISIIPV 404 Query: 40722 AVN-----EEAVSRSFQG--LFQENGDLSLDDAARIVGCWNGLSKRGVNGERLSIGDTSP 40880 N EE V+ + +NG RI N + + + D + Sbjct: 405 VYNTPDNLEEIVTNEMAAANVPVDNGLFRYQFVNRIGIVENSSRNKYIAELATKLSDLNN 464 Query: 40881 MNRAVAFARNIKESKKLAEQFELIGRQLLVEDDDALKLEAEHVDGTFNVLERSAKLDWLQ 41060 +AF NI+ + +AE + +G ++ E + + L+ Sbjct: 465 GAVYIAF-NNIEHGENIAEFLDELGTDYVIMQGSTSDEERQEI---------------LK 508 Query: 41061 DETKGNVCRILSNAKCLTEGVDVPSLDAVLFLNPRNSQVDVVQAVGRVMRRSEGKEYGYI 41240 G+V R++ +K L EGV VP+L +L+++ S++ V Q VGR++R GKE Y+ Sbjct: 509 GLVSGDV-RVILGSKVLDEGVSVPTLKYLLYVSGGQSEIQVGQRVGRILRLGSGKERVYV 567 >ref|NP_046572.1|ABC transporter Length = 705 Score = 49.3 bits (116), Expect = 4e-05 Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 11/170 (6%) Frame = -1 Query: 6093 VSVIGPSGCGKSTLLDMVGGLLKPTQGSVSINGESVTG----PRRDTAMVFQEDSTLHWR 5926 V +IG SG GKST + L K S+ +NG + R + E+ L Sbjct: 512 VLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKG 571 Query: 5925 TVLDNVAFGLEVKGVPKAER-------HERARRMIELVGLTGFEDHRPGQLSGGMKQRVA 5767 T+ +N+ G E+ + E HE + + E+ LS G KQR+A Sbjct: 572 TIKENLCMG-EIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG--SNLSTGQKQRLA 628 Query: 5766 IARALAMEPRVLLMDEPFGALDQQTRQFIGRELLRIWEKTRNRVLFITHD 5617 +ARA+ +P+VL++DE +D + I L R+ ++ ITH+ Sbjct: 629 LARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM----DCLIILITHN 674 >ref|NP_813744.2|integrase Length = 594 Score = 48.9 bits (115), Expect = 5e-05 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 23/141 (16%) Frame = -3 Query: 47056 YARVST-RGQSLDAQVDALVAAGAIKVFMEHASGATQ----------ARARWQDCLEHLQ 46910 YAR S R D +A +AAG V +A G + R+ W + Sbjct: 22 YARQSKGRSDGSDVSTEAQLAAGRALVASRNAQGGARWVVAGEFVDVGRSGWDPNVTRAD 81 Query: 46909 -----------PGNILVVTDLTRLGRSTA-DLSDIVTVLGRRGIGFRSLAEPWLDTTSAH 46766 G+++VV +L+RL R A D +I L + G+ F S+ EP+LDT++ Sbjct: 82 FERMMGEVRAGEGDVVVVNELSRLTRKGAHDALEIDNELKKHGVRFMSVLEPFLDTSTPI 141 Query: 46765 GKLIFDMFASLAEYERSRLSE 46703 G IF + A+LA+ + +E Sbjct: 142 GVAIFALIAALAKQDSDLKAE 162 >ref|NP_690785.1|site-specific recombinase for integration and excision Length = 474 Score = 48.9 bits (115), Expect = 5e-05 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 14/137 (10%) Frame = -3 Query: 47071 RNVIGYARVSTR-----GQSLDAQVDALVAA------GAIKVFMEHASGATQA-RARWQD 46928 +NV Y RVST G S+ AQ + L A + K +++ A R + Sbjct: 10 KNVGIYVRVSTEEQAKEGYSISAQKEKLKAYCISQGWDSYKFYIDEGKSAKDIHRPSLEL 69 Query: 46927 CLEHLQPGNI--LVVTDLTRLGRSTADLSDIVTVLGRRGIGFRSLAEPWLDTTSAHGKLI 46754 L H++ G I ++V L RL RS DL ++ + FRS E + DT SA G+L Sbjct: 70 MLRHIEQGIIDTVLVYRLDRLTRSVRDLYSLLDYFDKYQAVFRSATEVY-DTGSATGRLF 128 Query: 46753 FDMFASLAEYERSRLSE 46703 + A++A++ER L E Sbjct: 129 ITLVAAMAQWERENLGE 145 >ref|NP_542568.1|putative methyltransferase-endonuclease Length = 1288 Score = 45.1 bits (105), Expect = 7e-04 Identities = 25/69 (36%), Positives = 41/69 (59%) Frame = +3 Query: 41961 IITELYEKFFKLAFPRTAESLGIVYTPVEVVDFILRAVDDVLKKEFGVSISDEGVHVLDP 42140 ++ +LY+ +F P T ++LG YTP V+D+I+ VD + V +S G ++DP Sbjct: 391 LLGDLYQHYFD---PETRKALGEFYTPQPVIDYIMDGVD------YNVGVS--GERLIDP 439 Query: 42141 FTGTGTFVV 42167 G+GTF+V Sbjct: 440 SCGSGTFLV 448 >ref|NP_680515.1|putative helicase Length = 455 Score = 44.7 bits (104), Expect = 0.001 Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 6/147 (4%) Frame = +3 Query: 40887 RAVAFARNIKESKKLAEQFELIGRQLLVEDDDALKLEAEHVDGTFNVLERSAKLDWLQDE 41066 +A+ +A +I+ SK++ E F+ G + A H D +R D + + Sbjct: 217 QAIVYAHSIEASKQVVEAFQSAG------------ITAVHADAKTPKGQR----DRIMAD 260 Query: 41067 TKGNVCRILSNAKCLTEGVDVPSLDAVLFLNPRNSQVDVVQAVGRVMRRSEGKEYGYIIL 41246 K ILSN ++EG +VP + ++ L P S V +Q R MR GK II Sbjct: 261 FKAGKITILSNVDLISEGFNVPDVGVIIMLRPTASLVLDIQQSMRGMRYKPGKR-SIIID 319 Query: 41247 PIA------VPASEDPETALNDNKKYK 41309 +A +P +E E LND K K Sbjct: 320 HVANAYRFGLPDTEH-EWTLNDRPKKK 345 >ref|YP_024839.1|Pas53 Length = 567 Score = 44.7 bits (104), Expect = 0.001 Identities = 59/230 (25%), Positives = 84/230 (36%), Gaps = 4/230 (1%) Frame = +3 Query: 40551 TATPRIYVQDSKAKAAENDVAVYSMDDVAVYGPEFHHLGFGKAVEMGHLSDYKVLVLAVN 40730 TATP +D K +A + A+YG GK + GH Y V +L Sbjct: 156 TATPE---RDKKTLGVWERLAAFMSIREAIYGN-------GKRGKDGHEGGYLVPILPAV 205 Query: 40731 EEAVSRSFQGLFQENGDLSLDDAARIVGCWNGLSKRGVNGERLSIGDTSPMN----RAVA 40898 + + GD S D R + +G I D +N + VA Sbjct: 206 VVETEMDLTRVRKTGGDFSEGDLGR---------EMEESGAIAQIADAYLINAHDRKGVA 256 Query: 40899 FARNIKESKKLAEQFELIGRQLLVEDDDALKLEAEHVDGTFNVLERSAKLDWLQDETKGN 41078 F + + LA G + E +DGT + ER A L L K Sbjct: 257 FTPTVATAHALAAALCARG------------IRTEALDGTTHKDERRAILRRL----KTG 300 Query: 41079 VCRILSNAKCLTEGVDVPSLDAVLFLNPRNSQVDVVQAVGRVMRRSEGKE 41228 ++++N LTEG D PS+ V+ P VQ +GR R GK+ Sbjct: 301 ETQVVTNCGVLTEGFDEPSISCVVVARPTKFHGLYVQMIGRGTRLYPGKK 350 >ref|NP_511031.1|helicase Length = 418 Score = 43.1 bits (100), Expect = 0.003 Identities = 38/147 (25%), Positives = 66/147 (44%) Frame = +3 Query: 40785 SLDDAARIVGCWNGLSKRGVNGERLSIGDTSPMNRAVAFARNIKESKKLAEQFELIGRQL 40964 SLDD W + K + ++L+ G+ +A+ +A +I +S+K+A F G Sbjct: 168 SLDDQFNKRMIWGDVIK---HYQKLADGE-----QAILYASSIYQSEKMAASFNAAG--- 216 Query: 40965 LVEDDDALKLEAEHVDGTFNVLERSAKLDWLQDETKGNVCRILSNAKCLTEGVDVPSLDA 41144 + + H+DG + + D ++ +G + ++L N + EG DVP Sbjct: 217 ---------ISSAHIDGK---TPKPIRDDIIKQFREGEL-KVLCNLDLIGEGFDVPDCST 263 Query: 41145 VLFLNPRNSQVDVVQAVGRVMRRSEGK 41225 V+ L P S +Q R MR +GK Sbjct: 264 VIMLRPTQSLSLYIQQSMRGMRYKQGK 290 >ref|YP_195146.1|DNA helicase UvsW Length = 487 Score = 43.1 bits (100), Expect = 0.003 Identities = 88/428 (20%), Positives = 160/428 (37%), Gaps = 6/428 (1%) Frame = +3 Query: 39963 MRQIDRKEPRKYQRDAIDDVITGFQTSDRGKLIMACGTGKTYTSLKIVEEMVPVGGTALF 40142 M I + +PR YQ + + +RG + G+GK+ IV L Sbjct: 109 MDGITKIQPRDYQYATVYKALK----DNRGLFLSPTGSGKSLMIYSIVRYYAATNKKILL 164 Query: 40143 LVPSIALLQQTLNE-----WTAQATVPLRPLAVCSDTKVGRREHEDVSVHDLAFPATTDP 40307 +VP+ +L++Q + + W A C G+ ++ D V Sbjct: 165 IVPTTSLVEQMVKDFKDYGWNADQ--------FCHTIYSGKDKNTDKPV----------- 205 Query: 40308 QKLFYRTSISTGQEAVTVVFSTYQSIDVIAQAQALGLPDFDVILCDEAHRTTGITEAEHD 40487 + ST+QSI + D D ++ DEAH + +++ Sbjct: 206 ------------------IISTWQSIYKFPKRY---FDDIDCVIGDEAH----LFKSKSL 240 Query: 40488 DSAFVRVHDQAYLRAKKRLYMTATPRIYVQDSKAKAAENDVAVYSMDDVAVYGPEFHHLG 40667 ++H+ AK R T T + SK + ++GP Sbjct: 241 TGIMTKLHN-----AKYRFGFTGT----LDGSKTHKWVLE---------GLFGPCEKVTK 282 Query: 40668 FGKAVEMGHLSDYKVLVLAVNEEAVSRSFQGLFQENGDLSLDDAARIVGCWNGLSKRGVN 40847 ++ GHLS+ ++ +L E +Q + ++ +V C K+ N Sbjct: 283 TDDLIKKGHLSNLRIKILVCKHE-----YQYFEDYHSEMEY-----LVTC-----KKRNN 327 Query: 40848 GERLSIGDTSPMNRAVAFARNIKESKKLAEQF-ELIGRQLLVEDDDALKLEAEHVDGTFN 41024 + + D N V F K + L E +++G V V G+ + Sbjct: 328 LIKNLVKDIEG-NTLVLFNYVEKHGEPLYEMINKVVGENRRVF----------FVHGSVD 376 Query: 41025 VLERSAKLDWLQDETKGNVCRILSNAKCLTEGVDVPSLDAVLFLNPRNSQVDVVQAVGRV 41204 V +R + Q K N I+++ + G+++ L ++F +P S+V +Q++GRV Sbjct: 377 VDDRE---EVRQIAEKENNAVIIASYGTFSTGINIKRLHNIIFASPSKSRVRNLQSIGRV 433 Query: 41205 MRRSEGKE 41228 +R+ EGKE Sbjct: 434 LRKGEGKE 441 >ref|NP_944130.1|UvsW RNA-DNA and DNA-DNA helicase Length = 503 Score = 43.1 bits (100), Expect = 0.003 Identities = 93/428 (21%), Positives = 156/428 (36%), Gaps = 14/428 (3%) Frame = +3 Query: 39987 PRKYQRDAIDDVIT-----GFQTSDRGKLIMACGTGKTYTSLKIVEEMVPVGGTALFLVP 40151 P YQ D + + I G + GK ++AC TY L+ E G L LVP Sbjct: 114 PHWYQADTVFNAINKNRMIGNLPTSAGKSLIACLL--TYWYLQRYE------GKVLVLVP 165 Query: 40152 SIALLQQTLNEWTAQATVPLRPLAVCSDTKVGRREHEDVSVHDLAFPATTDPQKLFYRTS 40331 + AL+ Q + ++ A L P C G R++ Sbjct: 166 TTALVDQMIGDF---ADYRLIPRNACLGVMAGTRKN------------------------ 198 Query: 40332 ISTGQEAVTVVFSTYQSIDVIAQAQALGLPDFDVILCDEAHRTTGITEAEHDDSAFVRVH 40511 G E + V ST+QS + + F +I+ DE H +T + Sbjct: 199 ---GSEPIVV--STWQSA---CKMNSEWFKQFGMIIVDECHLSTA-------KELTTIIK 243 Query: 40512 DQAYLRAKKRLYMTATPRIYVQDSKAKAAENDVAVYSMDDVAVYGPEFHHLGFGKAVEMG 40691 A R K + M+ + R D KA + + ++G F + K +E G Sbjct: 244 GMADCRFK--IGMSGSLR----DGKANVLQY---------IGMFGDVFRPVTTKKLMEDG 288 Query: 40692 HLSDYKVLVLAVNEEAVSRSFQGLFQENGDLSLDDAARIVGCWNGLSKRGVNGERLSIGD 40871 ++D L +N + G D+ I N +KR RL++ Sbjct: 289 QVTD-----LDINAVFLRYPDHETILHKGKAYADEIKVI----NNHTKRNAWICRLALKL 339 Query: 40872 TSPMN-------RAVAFARNIKES--KKLAEQFELIGRQLLVEDDDALKLEAEHVDGTFN 41024 N + VA + + E+ KK E+ + + +D LK +AE+ DG Sbjct: 340 AKERNENVLIMFKHVAHGKWLYEALKKKYGEKVHFVSGETKTDDRVKLKGDAENEDGLI- 398 Query: 41025 VLERSAKLDWLQDETKGNVCRILSNAKCLTEGVDVPSLDAVLFLNPRNSQVDVVQAVGRV 41204 I+++ + G+ + L V+F P S++ V+Q++GRV Sbjct: 399 ---------------------IVASLGVFSTGISIKKLHHVIFSAPTKSKILVLQSIGRV 437 Query: 41205 MRRSEGKE 41228 +R+ K+ Sbjct: 438 LRKHSSKD 445 >ref|NP_569809.1|hypothetical protein Length = 129 Score = 42.4 bits (98), Expect = 0.005 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 20/132 (15%) Frame = -2 Query: 34466 TTAPKGITALIYRDALGTDFSNRGISARAMEVTVIGEGIDP-------------VFEATE 34326 T G+ ++R +LG D +N G++++A VT+IG DP VFE + Sbjct: 2 TEITAGLRVQVFRSSLG-DCTNGGVTSKADVVTLIGYA-DPHSGALKPLPRMSQVFEPAD 59 Query: 34325 QRPAVRLVKTETFHRETVIHAEPVIPEGEPAPWYMFGGTFIFSSDARFRRAAGH------ 34164 PAV +V++ + H P+ + + W M GG SSD+RF Sbjct: 60 DAPAVVMVRSNL--PGALPHLVPLDAK-QAGEWTMHGGNLAGSSDSRFGELIEKVFDGPR 116 Query: 34163 -YGAVPLHDRRE 34131 ++P+HDR E Sbjct: 117 CVSSLPVHDRIE 128 >ref|NP_861886.1|UvsW RNA-DNA and DNA-DNA helicase, ATPase Length = 504 Score = 42.0 bits (97), Expect = 0.006 Identities = 51/230 (22%), Positives = 100/230 (43%), Gaps = 2/230 (0%) Frame = +3 Query: 40623 MDDVAVYGPEFHHLGFGKAVEMGHLSDYKV--LVLAVNEEAVSRSFQGLFQENGDLSLDD 40796 M V ++G F + K +E G +++ K+ + L +E ++ +QE Sbjct: 271 MQYVGMFGEIFRPVSTSKLMEDGQVTELKINSIFLRYPDEFATKLKGKTYQEE------- 323 Query: 40797 AARIVGCWNGLSKRGVNGERLSIGDTSPMNRAVAFARNIKESKKLAEQFELIGRQLLVED 40976 V GL +R +LS+ A +++ K++ E + +G + Sbjct: 324 ----VKIITGLKRRTKWIAQLSVKLAKKDENAFVMFKHVTHGKEIFEAIKELGYE----- 374 Query: 40977 DDALKLEAEHVDGTFNVLERSAKLDWLQDETKGNVCRILSNAKCLTEGVDVPSLDAVLFL 41156 + +V G + R+A L + + KG + I+++ + G+ V +L V+F Sbjct: 375 ------KVYYVSGEVDTETRNA-LKVMAENGKGII--IVASYGVFSTGISVKNLHHVIFA 425 Query: 41157 NPRNSQVDVVQAVGRVMRRSEGKEYGYIILPIAVPASEDPETALNDNKKY 41306 + S++ V+Q VGRV+R+ G + + + A P+ +LN KKY Sbjct: 426 HGVKSKIIVLQTVGRVLRK-HGSKAVATVWDLIDDAGVKPK-SLNTKKKY 473 >ref|NP_112664.1|INT Length = 485 Score = 40.8 bits (94), Expect = 0.014 Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 15/140 (10%) Frame = -3 Query: 47077 VSRNVIGYARVSTRGQ-----SLDAQVDALVAAGAIKVFMEHA-------SGATQARARW 46934 +++ V Y RVST Q S+D Q+D L + SGA R Sbjct: 1 MTKKVAIYTRVSTTNQAEEGFSIDEQIDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAM 60 Query: 46933 QDCLEHLQPG--NILVVTDLTRLGRSTADLSDIVT-VLGRRGIGFRSLAEPWLDTTSAHG 46763 Q + ++ + ++V L RL RS D +V V + I F SL E +DT+SA G Sbjct: 61 QRLINDIENKAFDTVLVYKLDRLSRSVRDTLYLVKDVFTKNKIDFISLNES-IDTSSAMG 119 Query: 46762 KLIFDMFASLAEYERSRLSE 46703 L + +++ E+ER + E Sbjct: 120 SLFLTILSAINEFERENIKE 139 >ref|NP_050128.1|putative DEAH-family helicase Length = 455 Score = 40.8 bits (94), Expect = 0.014 Identities = 32/110 (29%), Positives = 51/110 (46%) Frame = +3 Query: 40899 FARNIKESKKLAEQFELIGRQLLVEDDDALKLEAEHVDGTFNVLERSAKLDWLQDETKGN 41078 FA N +K + + + Q + ++ + + A+ VDG +R + QD G Sbjct: 213 FANN---TKAIIYSYSVHSCQQIAKEFNKNNIPAKEVDGKTKKEDRDKAM---QDFRDGK 266 Query: 41079 VCRILSNAKCLTEGVDVPSLDAVLFLNPRNSQVDVVQAVGRVMRRSEGKE 41228 + +IL NA+ EGVDVP + V+ L P S +Q R MR K+ Sbjct: 267 I-KILVNAELYGEGVDVPDCETVIMLRPTQSLSLFIQQSMRCMRYQPDKQ 315 >ref|NP_817811.1|gp50 Length = 571 Score = 40.4 bits (93), Expect = 0.018 Identities = 87/416 (20%), Positives = 142/416 (34%), Gaps = 1/416 (0%) Frame = +3 Query: 39981 KEPRKYQRDAIDDVITGFQT-SDRGKLIMACGTGKTYTSLKIVEEMVPVGGTALFLVPSI 40157 +E R YQ A+ V +++ + R +++ G GK+ K+ G + L Sbjct: 10 RELRSYQTAAVAAVERDWESGTKRTGVVLPTGAGKSTVIGKLASNAYRSGKRVVALAHRA 69 Query: 40158 ALLQQTLNEWTAQATVPLRPLAVCSDTKVGRREHEDVSVHDLAFPATTDPQKLFYRTSIS 40337 LL Q + A + P SD + EH+D Sbjct: 70 ELLFQMRRDMLA-----VDPTIPASDIGIVMAEHDD------------------------ 100 Query: 40338 TGQEAVTVVFSTYQSIDVIAQAQALGLPDFDVILCDEAHRTTGITEAEHDDSAFVRVHDQ 40517 +VF++ Q++ + ALG D VIL DE H E H + + Sbjct: 101 ---HHAPIVFASLQTLAHAKRRNALGRRD--VILWDEFHHAGA--EGFHATFEELGGYTH 153 Query: 40518 AYLRAKKRLYMTATPRIYVQDSKAKAAENDVAVYSMDDVAVYGPEFHHLGFGKAVEMGHL 40697 AYL TAT +Y E +G G ++ + Sbjct: 154 AYLCG-----FTAT--------------------------MYRNEKGTIGLGDVIQK--V 180 Query: 40698 SDYKVLVLAVNEEAVSRSFQGLFQENGDLSLDDAARIVGCWNGLSKRGVNGERLSIGDTS 40877 S K L A+ + + + LDD + G + N E + + + Sbjct: 181 SYEKDLRWAIKHGFLVQPRGKTVRIKNLDKLDDVRTVAGDFK-------NDELAEVMEAA 233 Query: 40878 PMNRAVAFARNIKESKKLAEQFELIGRQLLVEDDDALKLEAEHVDGTFNVLERSAKLDWL 41057 A + +E + + G ++ + + + AE V G+ ER + + Sbjct: 234 VEYVVDAIELHARERTNIVFAASVDGAHMIADAINERGMTAEAVTGSMPHAER----EQV 289 Query: 41058 QDETKGNVCRILSNAKCLTEGVDVPSLDAVLFLNPRNSQVDVVQAVGRVMRRSEGK 41225 D + V + L LTEG D P D V+ P S+ Q VGR +R GK Sbjct: 290 YDRYRTGVTKNLVTVMVLTEGADFPMCDTVVMARPTRSKNLYAQMVGRALRLFPGK 345 >ref|NP_620626.1|putative transposase Length = 362 Score = 40.0 bits (92), Expect = 0.023 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 17/142 (11%) Frame = +3 Query: 52839 YLHHAVDDHSRLA----YSEILTDEKKETXXXXXXXXXXXXXXHGITVRAVLTDNGACY- 53003 Y++ +D+ +RLA Y ++ TD + GI + + TDNG+ + Sbjct: 206 YVYDFIDEKTRLALGYVYDKLSTDNAIDAVKKAISDFKNIF---GIIITRIRTDNGSEFI 262 Query: 53004 -----------RSRAFTAAL-GPNIKHRRTRPYRPQTNGKVERFNRTLNTEWAYARPYTS 53147 + FT L NI H+ T PQ+NGK+ERF++ + + + Sbjct: 263 NNYRNNQKISVKKTNFTQFLTDKNILHQTTPVRSPQSNGKIERFHQNYTKLFVFEEKILN 322 Query: 53148 EAERAATYPGWLHQYNHHRTHR 53213 + + YN R H+ Sbjct: 323 AVSLQNKLNDYYYFYNFERVHK 344 >ref|NP_047971.2|gp26 Length = 174 Score = 40.0 bits (92), Expect = 0.023 Identities = 18/44 (40%), Positives = 26/44 (59%) Frame = -3 Query: 18745 IQEGVIAVGDRLPSERDLCDQLGVSRVTVREALRILETNGLVTV 18614 I G GD+LPSER +C+ LG+ R +R+ L L G++ V Sbjct: 34 IATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGILEV 77 >ref|NP_795616.1|putative helicase Length = 409 Score = 39.3 bits (90), Expect = 0.040 Identities = 67/305 (21%), Positives = 124/305 (40%), Gaps = 4/305 (1%) Frame = +3 Query: 40323 RTSISTGQEAVTVVFSTYQSIDVIAQAQALGLPDFDVILCDEAHRTTGITEAEHDDSAFV 40502 RT + G + + QS+ + + +L P+ VIL DEAH + +++ Sbjct: 30 RTFAANGVNSNLLTIGGVQSL--VRKLDSLSQPE--VILIDEAHHSKA--------KSYL 77 Query: 40503 RVHDQAYLRAKKRLYMTATPRIYVQDSKAKAAENDVAVYSMDDVAVYGPEFHHLGFGKAV 40682 ++ D + + L T TP D DD+A L GK+V Sbjct: 78 KIID--HFKNAYVLMFTGTPVRLNGDG-------------FDDIA------DDLVAGKSV 116 Query: 40683 ----EMGHLSDYKVLVLAVNEEAVSRSFQGLFQENGDLSLDDAARIVGCWNGLSKRGVNG 40850 E G+++++K ++ + + + G F ++ S++ + + V + + K + Sbjct: 117 KWLQEHGNIANFKYYAPSMIDNSALKKRGGEFTKD---SVNQSMKSV-IYGDVIK---HY 169 Query: 40851 ERLSIGDTSPMNRAVAFARNIKESKKLAEQFELIGRQLLVEDDDALKLEAEHVDGTFNVL 41030 E+L+ G +A+ + +++ S +++ F G Q K E E F Sbjct: 170 EKLAKG-----KQAIVYTHSVEASHLVSDMFNQAGYQSQSVSGKTPKSEREEAMQAF--- 221 Query: 41031 ERSAKLDWLQDETKGNVCRILSNAKCLTEGVDVPSLDAVLFLNPRNSQVDVVQAVGRVMR 41210 R KL RIL N + TEG+D+P++D + L P S +Q R + Sbjct: 222 -RDGKL------------RILVNCELFTEGIDLPNVDVCIMLRPTQSLSLYLQFAMRPLN 268 Query: 41211 RSEGK 41225 +GK Sbjct: 269 PRDGK 273 >ref|NP_943831.1|gp53 Length = 559 Score = 39.3 bits (90), Expect = 0.040 Identities = 39/189 (20%), Positives = 74/189 (39%) Frame = +3 Query: 40677 AVEMGHLSDYKVLVLAVNEEAVSRSFQGLFQENGDLSLDDAARIVGCWNGLSKRGVNGER 40856 A++ G+L + L + +N + + GD D A ++ ++ V+ + Sbjct: 180 AIDSGYLVRPRGLTVRINN---LNALDDVRTVAGDFQQSDLAEVM---EAATEYVVDAIK 233 Query: 40857 LSIGDTSPMNRAVAFARNIKESKKLAEQFELIGRQLLVEDDDALKLEAEHVDGTFNVLER 41036 L D P + FA ++ + +A+ A A V G+ + ER Sbjct: 234 LHAADRRP----IIFAASVDAAHHIADALT------------AADFPAVAVTGSMSYAER 277 Query: 41037 SAKLDWLQDETKGNVCRILSNAKCLTEGVDVPSLDAVLFLNPRNSQVDVVQAVGRVMRRS 41216 + + + + L + LTEG D P D V+ P S+ Q +GR +R Sbjct: 278 QP----VYEAYRNGTAKALVTVQVLTEGADFPMCDCVVLARPTRSRNLYSQMIGRALRLY 333 Query: 41217 EGKEYGYII 41243 +GK+ ++ Sbjct: 334 DGKQDALVL 342 >ref|NP_695088.1|putative helicase Length = 443 Score = 38.9 bits (89), Expect = 0.052 Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 10/143 (6%) Frame = +3 Query: 40827 LSKRGVNGERLSIGDTSPMNRAVAFARNIKESKKLAEQFELIGRQLLVEDDDALKLEAEH 41006 L KRG + S+ DT + V + I+ +KLA+ G+Q +V +E Sbjct: 179 LKKRGGEFTKKSVDDTM---KRVIYGDVIRHYEKLAK-----GKQAIVYTHSVEA--SES 228 Query: 41007 VDGTFNV-----LERSAKL-----DWLQDETKGNVCRILSNAKCLTEGVDVPSLDAVLFL 41156 V TFN + S K D + I+ N + TEG+D+P++D + L Sbjct: 229 VSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDGKLTIMVNCELFTEGIDLPNVDVCIML 288 Query: 41157 NPRNSQVDVVQAVGRVMRRSEGK 41225 P S +Q R + EGK Sbjct: 289 RPTQSLSLYLQFAMRALNPREGK 311 >ref|NP_049999.1|putative helicase Length = 443 Score = 38.9 bits (89), Expect = 0.052 Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 10/143 (6%) Frame = +3 Query: 40827 LSKRGVNGERLSIGDTSPMNRAVAFARNIKESKKLAEQFELIGRQLLVEDDDALKLEAEH 41006 L KRG + S+ DT + V + I+ +KLA+ G+Q +V +E Sbjct: 179 LKKRGGEFTKKSVDDTM---KRVIYGDVIRHYEKLAK-----GKQAIVYTHSVEA--SES 228 Query: 41007 VDGTFNV-----LERSAKL-----DWLQDETKGNVCRILSNAKCLTEGVDVPSLDAVLFL 41156 V TFN + S K D + I+ N + TEG+D+P++D + L Sbjct: 229 VSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDGKLTIMVNCELFTEGIDLPNVDVCIML 288 Query: 41157 NPRNSQVDVVQAVGRVMRRSEGK 41225 P S +Q R + EGK Sbjct: 289 RPTQSLSLYLQFAMRALNPREGK 311 >ref|NP_049952.1|putative helicase Length = 443 Score = 38.9 bits (89), Expect = 0.052 Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 10/143 (6%) Frame = +3 Query: 40827 LSKRGVNGERLSIGDTSPMNRAVAFARNIKESKKLAEQFELIGRQLLVEDDDALKLEAEH 41006 L KRG + S+ DT + V + I+ +KLA+ G+Q +V +E Sbjct: 179 LKKRGGEFTKKSVDDTM---KRVIYGDVIRHYEKLAK-----GKQAIVYTHSVEA--SES 228 Query: 41007 VDGTFNV-----LERSAKL-----DWLQDETKGNVCRILSNAKCLTEGVDVPSLDAVLFL 41156 V TFN + S K D + I+ N + TEG+D+P++D + L Sbjct: 229 VSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDGKLTIMVNCELFTEGIDLPNVDVCIML 288 Query: 41157 NPRNSQVDVVQAVGRVMRRSEGK 41225 P S +Q R + EGK Sbjct: 289 RPTQSLSLYLQFAMRALNPREGK 311 >ref|NP_056709.1|putative helicase Length = 443 Score = 38.9 bits (89), Expect = 0.052 Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 10/143 (6%) Frame = +3 Query: 40827 LSKRGVNGERLSIGDTSPMNRAVAFARNIKESKKLAEQFELIGRQLLVEDDDALKLEAEH 41006 L KRG + S+ DT + V + I+ +KLA+ G+Q +V +E Sbjct: 179 LKKRGGEFTKKSVDDTM---KRVIYGDVIRHYEKLAK-----GKQAIVYTHSVEA--SES 228 Query: 41007 VDGTFNV-----LERSAKL-----DWLQDETKGNVCRILSNAKCLTEGVDVPSLDAVLFL 41156 V TFN + S K D + I+ N + TEG+D+P++D + L Sbjct: 229 VSNTFNEQGYTSIAISGKTPPEVRDRAMQAFRDGKLTIMVNCELFTEGIDLPNVDVCIML 288 Query: 41157 NPRNSQVDVVQAVGRVMRRSEGK 41225 P S +Q R + EGK Sbjct: 289 RPTQSLSLYLQFAMRALNPREGK 311 >ref|NP_680502.1|integrase Length = 385 Score = 38.9 bits (89), Expect = 0.052 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Frame = +3 Query: 21624 GLDLHSLRRSYATHLLEDGWDPRFVQHQMGHEHAS-TTGIYQFVSD 21758 G H LR ++ ++LL G D ++V H++GHE+ TT IY + D Sbjct: 326 GFGFHGLRHTHGSYLLYKGLDIQYVSHRLGHENVGITTKIYTHLLD 371 >ref|NP_795446.1|putative DEAD box family helicase Length = 409 Score = 38.5 bits (88), Expect = 0.068 Identities = 29/113 (25%), Positives = 47/113 (41%) Frame = +3 Query: 40887 RAVAFARNIKESKKLAEQFELIGRQLLVEDDDALKLEAEHVDGTFNVLERSAKLDWLQDE 41066 +A+ + +++ S +++ F G Q K E E F R KL Sbjct: 177 QAIVYTHSVEASHLVSDMFNQAGYQSQSVSGKTPKSEREEAMQAF----RDGKL------ 226 Query: 41067 TKGNVCRILSNAKCLTEGVDVPSLDAVLFLNPRNSQVDVVQAVGRVMRRSEGK 41225 RIL N + TEG+D+P++D + L P S +Q R + +GK Sbjct: 227 ------RILVNCELFTEGIDLPNVDVCIMLRPTQSLSLYLQFAMRPLNPRDGK 273 >ref|NP_076780.1|integrase Length = 399 Score = 38.5 bits (88), Expect = 0.068 Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 11/212 (5%) Frame = +3 Query: 21177 FTKTELQMLFDHADDQVELIAASGKKGWQAAYRDAVMLKVAYSYGLRFNELRHLQTIDFA 21356 + K+EL LF++ + SG+ W Y A +L++ + GLR E L D Sbjct: 195 YKKSELAKLFNYLES-----LKSGQ--WSNEYFKA-LLRLLVASGLRIGEAMALSWSDIN 246 Query: 21357 ANPQARRFGKAGVCKVRFGKSRKGSPHKPRSVLTVFDWTAGVIEDW----------LANG 21506 Q K V + + + K + K ++++ D V++ W L N Sbjct: 247 FQNQTVSVSKTTVRRFQIQDTPKSN--KSNRIISIDDKAIYVLKSWYFFQKKHFMKLGNP 304 Query: 21507 RGTLDTLDLFPSERGGLICESTXXXXXXXXXXXXXXPMDGLDLHSLRRSYATHLLEDGWD 21686 + L +FP GG++ P+ L H RRS+A+ L Sbjct: 305 QQNL----VFPKIEGGVMDYHNLIYKLNNIIKNAELPL--LSFHGFRRSHASLCLNAEMS 358 Query: 21687 PRFVQHQMGHEHAS-TTGIYQFVSDDFRNTTL 21779 + +Q ++GH T +Y + + +N L Sbjct: 359 YKVIQERLGHSKLQLTMDLYSHLEPEKKNKEL 390 >ref|NP_944303.1|conserved phage mega protein Length = 4602 Score = 38.1 bits (87), Expect = 0.089 Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Frame = -3 Query: 31555 QRTWRDGTGDRPPQGRRHRARADGPAPHPRRRGSAAASDPGDDHRQP--RGSRTYRDSGG 31382 Q + RD GDR +R+R D A P RG+AA +D GD H + RG R G Sbjct: 1499 QPSGRDAGGDRGGAAKRNRQSRD--AGEPAVRGAAAEADAGDQHGREVGRGDRAGAGDGN 1556 Query: 31381 GKHPAR*TDRSGRSRRLPP 31325 + P R G R+ P Sbjct: 1557 DRGP---VSRVGDDYRVKP 1572 >ref|NP_852574.1|Collagen triple helix repeat protein Length = 536 Score = 38.1 bits (87), Expect = 0.089 Identities = 36/109 (33%), Positives = 44/109 (40%), Gaps = 2/109 (1%) Frame = +1 Query: 52861 TIPAWPTPKYSPTKRRKPPQRSG-SAPHRSSPPTASLSEPCSPITALATAPEPSQPPWAR 53037 T+P PT PT P +G + P S+ PT T L P+ P Sbjct: 26 TLPTGPTGSTGPTG---PTGSTGPTGPTGSTGPTGPTGS-----TGLTGLTGPTGP---- 73 Query: 53038 TSSTAGLGPTGHRPMAR*NASTGPSTRNGPTPGPTHQK-PSEQPPTPVG 53181 T T GPTG TGP++ GPT GPT PS+ P P G Sbjct: 74 TGPTGPTGPTGPTGSTGLTGPTGPNSDTGPT-GPTGPTGPSDGPTGPTG 121 Score = 37.7 bits (86), Expect = 0.12 Identities = 26/69 (37%), Positives = 27/69 (39%) Frame = +1 Query: 52975 PCSPITALATAPEPSQPPWARTSSTAGLGPTGHRPMAR*NASTGPSTRNGPTPGPTHQKP 53154 P P L T P S P T ST GPTG STG + GPT GPT Sbjct: 20 PAIPPFTLPTGPTGSTGPTGPTGSTGPTGPTGSTGPTGPTGSTGLTGLTGPT-GPTGPTG 78 Query: 53155 SEQPPTPVG 53181 P P G Sbjct: 79 PTGPTGPTG 87 Score = 37.0 bits (84), Expect = 0.20 Identities = 32/103 (31%), Positives = 39/103 (37%), Gaps = 8/103 (7%) Frame = +1 Query: 52858 MTIPAWPTPKYSPTKRRKPPQRSG----SAPHRSSPPTASLSE--PCSPITALATAPEPS 53019 +T P PT PT P +G + P+ + PT P T A P+ Sbjct: 67 LTGPTGPTGPTGPTGPTGPTGSTGLTGPTGPNSDTGPTGPTGPTGPSDGPTGPTGATGPT 126 Query: 53020 QPPWARTSSTAGLGPTGHRPMAR*NASTGPSTRNGPT--PGPT 53142 PP T T G TG STGP+ GPT GPT Sbjct: 127 GPPDGPTGDTGPTGSTGPTGDTGPTGSTGPTGDTGPTGSTGPT 169 Score = 36.2 bits (82), Expect = 0.34 Identities = 34/104 (32%), Positives = 37/104 (35%), Gaps = 2/104 (1%) Frame = +1 Query: 52867 PAWPTPKYSPTKRRKPPQRSGSAPHRSSPPTASLSEPCSPITALATAPEPSQPPWARTSS 53046 P PT PT P + P S+ PT S T P S P T Sbjct: 116 PTGPTGATGPTGPPDGPT-GDTGPTGSTGPTGDTGPTGSTGPTGDTGPTGSTGPTGDTGP 174 Query: 53047 TAGLGPTGHRPMAR*NASTGPSTRNGPT--PGPTHQKPSEQPPT 53172 T GPTG STGP+ GPT GPT E PT Sbjct: 175 TGSTGPTGDTGPT---GSTGPTGDTGPTGSTGPTGPGCIEPLPT 215 >ref|NP_536415.1|putative chromosome partitioning protein Length = 273 Score = 37.7 bits (86), Expect = 0.12 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 12/131 (9%) Frame = -1 Query: 31596 RKDAALTPDFIASIKEHGVMEPVIAHR-KDDGTVHVLMGQRRTRAAVEAQRPLI-----P 31435 R A P + + + GV+EPV+ ++ + G V+ G+RR A E R LI P Sbjct: 39 RVHQAPNPKTVRNYRAQGVLEPVLFYKDPETGENLVIDGRRRVINARELNRQLIEAGEEP 98 Query: 31434 VMIIDSPEEAER------IVTQVVENIQRAELTEADEADAYHQLSLIGVSATAIAKKTGR 31273 + I P+ R + V N R E + + A+ ++ +G + AIA G Sbjct: 99 ITIPAIPKRVMRDSDKSFVGMMVSTNEIREEDSPINRAEKMARMLDVGHTEDAIAVAFGV 158 Query: 31272 TKTTVESALKV 31240 TV SALK+ Sbjct: 159 EVPTVRSALKL 169 >ref|NP_945099.1|gp68 Length = 273 Score = 37.0 bits (84), Expect = 0.20 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 12/131 (9%) Frame = -1 Query: 31596 RKDAALTPDFIASIKEHGVMEPVIAHR-KDDGTVHVLMGQRRTRAAVEAQRPLI-----P 31435 R A P + + + GV+EPV+ ++ + G V+ G+RR A E R LI P Sbjct: 39 RVHQAPNPKTVRNYRVQGVLEPVLFYKDPETGENLVIDGRRRVINARELNRQLIDAGEEP 98 Query: 31434 VMIIDSPEEAER------IVTQVVENIQRAELTEADEADAYHQLSLIGVSATAIAKKTGR 31273 + I P+ R + V N R E + + A+ ++ +G + AIA G Sbjct: 99 ITIPAIPKRVMRDSDKSFVGMMVSTNEIREEDSPINRAEKMARMLDVGHTEDAIAVVFGV 158 Query: 31272 TKTTVESALKV 31240 TV SALK+ Sbjct: 159 EVPTVRSALKL 169 >ref|NP_049421.1|putative helicase Length = 443 Score = 36.2 bits (82), Expect = 0.34 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 12/165 (7%) Frame = +3 Query: 40767 QENGDLSLDD--AARIVGCWNGLSKRGVNGERLSIGDTSPMNRAVAFARNIKESKKLAEQ 40940 QENG+++ A ++ N L KRG + S+ DT + V + I+ +KLA+ Sbjct: 158 QENGNIAPFKYYAPSLIDTTN-LKKRGGEFTKKSVDDTM---KRVIYGDVIRHYEKLAK- 212 Query: 40941 FELIGRQLLVEDDDALKLEAEHVDGTFNV-----LERSAKL-----DWLQDETKGNVCRI 41090 G+Q +V +E V TF + S K + + I Sbjct: 213 ----GKQAIVYTHSVEA--SESVSNTFKKNGYTSIAISGKTPPEVRERAMQAFRDRELTI 266 Query: 41091 LSNAKCLTEGVDVPSLDAVLFLNPRNSQVDVVQAVGRVMRRSEGK 41225 + N + TEG+D+P++D + L P S +Q R + EGK Sbjct: 267 MVNCELFTEGIDLPNVDVCIMLRPTQSLSLYLQFAMRALNPREGK 311 >ref|NP_944342.1|gp33 Length = 472 Score = 36.2 bits (82), Expect = 0.34 Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 14/95 (14%) Frame = -1 Query: 52677 AGRCLGPGRPAGASGTGSGPFPRSSGQGAGGLRSGEDPTGG*NAAPESA----------V 52528 AG G G PAG G +GP G GA G G +P GG A + Sbjct: 375 AGGNGGAGAPAGGYGQDTGP----QGVGASGGAGGSNPFGGGGTAVRGSQIGNTMLAGLA 430 Query: 52527 RCGHQCG----SGFDAAARTSQPCRPRHGPGTGPP 52435 G+ CG G AA T+ P + G G P Sbjct: 431 ATGYGCGGGGCGGVYAAGNTTIPTSTGNSGGAGTP 465 >ref|NP_795429.1|putative integrase Length = 362 Score = 35.8 bits (81), Expect = 0.44 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = +3 Query: 21531 LFPSERGGLICESTXXXXXXXXXXX