BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig9 (2317 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,693,839 Number of Sequences: 14420 Number of extensions: 66335 Number of successful extensions: 291 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 271 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 290 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1115103236 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig10 (3086 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164710.1|orf75 39 0.004 ref|YP_164705.1|orf70 37 0.012 ref|NP_899322.1|recombination endonuclease subunit 35 0.036 ref|NP_891605.1|recombination endonuclease subunit 34 0.11 ref|YP_195153.1|recombination protein gp46 33 0.18 ref|YP_024504.1|putative exonuclease 32 0.31 >ref|YP_164710.1|orf75 Length = 355 Score = 38.5 bits (88), Expect = 0.004 Identities = 20/64 (31%), Positives = 33/64 (51%) Frame = +2 Query: 293 DLAYVALGHLHLAQAVGGRETVRYSGSALPLSFGERGYRHGVVVADLDGEAVRAQRVLRV 472 D +V LGH H Q + E V Y+G + ++F + G G + D D + + A + L Sbjct: 198 DSDFVFLGHYHWRQNLS--ENVAYTGDPVQINFNDEGQDKGFYILDTDKDYMPAFKKLDY 255 Query: 473 PRFV 484 P+F+ Sbjct: 256 PKFI 259 >ref|YP_164705.1|orf70 Length = 638 Score = 37.0 bits (84), Expect = 0.012 Identities = 43/184 (23%), Positives = 71/184 (38%), Gaps = 2/184 (1%) Frame = +1 Query: 955 IAGAGIFSIAGPTGSGKSTLLDALCLALYGKTPRLRDRAAGKRVMVGWSEEGETLD--MN 1128 I G+ I+G G GKS++ A+ AL+ KT ++G+T D +N Sbjct: 21 IDSRGLTLISGKNGQGKSSIYAAILYALFNKT-----------------QKGQTADAIIN 63 Query: 1129 DVRALVSRGTAGASAEVEYQGMDGXXXXXXXXXXXXXXXVEGAFQAQAMTVEDLDTGEVL 1308 DV S + Y+ G + F VE + L Sbjct: 64 DV------AKKNTSVILNYENA-GVRYRVCRYRKHKENHNKVLFYVNE--VEKTSSSNKL 114 Query: 1309 AEKVTQAVARNEAAIGFTFDELKRAVVLPQFEFTNFLRADADVRAAILERVTGTAVYGRL 1488 +++ EA++G +FD + + VL TNF + R I+E +T ++Y + Sbjct: 115 TDELI------EASVGMSFDTMLNSFVLGDSLVTNFSVSTDKQRKEIIEDITNISIYKKA 168 Query: 1489 SQAA 1500 S A Sbjct: 169 SSVA 172 >ref|NP_899322.1|recombination endonuclease subunit Length = 745 Score = 35.4 bits (80), Expect = 0.036 Identities = 14/23 (60%), Positives = 18/23 (78%) Frame = +1 Query: 979 IAGPTGSGKSTLLDALCLALYGK 1047 I G G+GKST ++A+C ALYGK Sbjct: 32 ITGTNGAGKSTYIEAICFALYGK 54 >ref|NP_891605.1|recombination endonuclease subunit Length = 560 Score = 33.9 bits (76), Expect = 0.11 Identities = 13/23 (56%), Positives = 18/23 (78%) Frame = +1 Query: 979 IAGPTGSGKSTLLDALCLALYGK 1047 I G G+GKST+++ALC L+GK Sbjct: 34 ITGVNGAGKSTMIEALCFVLFGK 56 >ref|YP_195153.1|recombination protein gp46 Length = 576 Score = 33.1 bits (74), Expect = 0.18 Identities = 14/23 (60%), Positives = 18/23 (78%) Frame = +1 Query: 979 IAGPTGSGKSTLLDALCLALYGK 1047 I G G+GKST+LDAL +L+GK Sbjct: 32 IVGDNGAGKSTILDALTFSLFGK 54 >ref|YP_024504.1|putative exonuclease Length = 639 Score = 32.3 bits (72), Expect = 0.31 Identities = 14/21 (66%), Positives = 17/21 (80%) Frame = +1 Query: 994 GSGKSTLLDALCLALYGKTPR 1056 GSGKSTL+ A+ ALYGKT + Sbjct: 44 GSGKSTLISAITYALYGKTEK 64 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.317 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,876,654 Number of Sequences: 14420 Number of extensions: 58613 Number of successful extensions: 312 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 295 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 311 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1508891251 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig11 (3602 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,961,363 Number of Sequences: 14420 Number of extensions: 118234 Number of successful extensions: 420 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 383 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 420 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1770143702 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig12 (3600 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,594,327 Number of Sequences: 14420 Number of extensions: 269808 Number of successful extensions: 1028 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 875 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1016 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1768537401 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig13 (4756 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_680515.1|putative helicase 34 0.16 >ref|NP_680515.1|putative helicase Length = 455 Score = 33.9 bits (76), Expect = 0.16 Identities = 25/109 (22%), Positives = 47/109 (43%) Frame = +3 Query: 783 GRRVIAAVGPTGVGKTTTLAKVAARALLETRKRVAFVTVDTYRLGGAEQLTRYAGIMEVP 962 G + + V P G GK+ +A++ AR +E V F+ V L T A +++ Sbjct: 22 GNKSVLLVSPAGSGKSVIIAEI-ARLAVERSGHVMFM-VHRQELVNQIVQTFQADEIDLQ 79 Query: 963 VLVARDRGELGRALERLSDVDLVLVDTAGHASVEDVERQAALVRSIPRV 1109 G++ L RL L++ D + H+ + + + +PR+ Sbjct: 80 ATTIMTVGKIANRLNRLPRPSLIITDESHHSLAKTYRKIYSFYADVPRL 128 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,530,517 Number of Sequences: 14420 Number of extensions: 220364 Number of successful extensions: 1082 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 882 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1072 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2340952124 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig14 (4374 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_665952.1|unknown 33 0.26 >ref|NP_665952.1|unknown Length = 456 Score = 33.1 bits (74), Expect = 0.26 Identities = 20/52 (38%), Positives = 26/52 (50%) Frame = +1 Query: 3826 PTLPHRFRCSTIGSGGLNYRVRDGNGCDPTDIATANL*KNVRRVASRQPLRR 3981 PTLPH + S GS G + R+ DG+ AT+ L + V S P RR Sbjct: 319 PTLPHTYDDSRSGSSGTHLRIEDGSDISLPGNATSAL--EIEVVDSDDPYRR 368 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,992,204 Number of Sequences: 14420 Number of extensions: 256215 Number of successful extensions: 1001 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 864 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1001 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2140614577 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig15 (3911 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,337,455 Number of Sequences: 14420 Number of extensions: 179579 Number of successful extensions: 781 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 655 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 774 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1916624724 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig16 (6146 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,483,863 Number of Sequences: 14420 Number of extensions: 310453 Number of successful extensions: 1344 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1051 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1330 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 3013616466 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig17 (5845 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,683,310 Number of Sequences: 14420 Number of extensions: 277985 Number of successful extensions: 1159 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 969 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1157 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2857205745 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig18 (6751 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 42 0.001 ref|NP_064745.1|gp7 38 0.016 >ref|NP_046572.1|ABC transporter Length = 705 Score = 41.6 bits (96), Expect = 0.001 Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 17/185 (9%) Frame = -3 Query: 1814 RVLVRDLDFTVRRGDVYVVMGPSGCGKTTLLRHLLGLQE-PAAGEVRYGAEPFTGAPPDA 1638 R +V D++ + R D +++G SG GK+T + L L + P G + Sbjct: 496 RYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSI 555 Query: 1637 RERL--LRRVGVLFQGAALWTSMTLAENVALPLEQFTALPPDAIREVVRLKLALVGLGGF 1464 R+R+ + LF+G T+ EN+ + + I + + Sbjct: 556 RKRIVYIDENPFLFKG-------TIKENLCMG----EIFDQNEIENACIMSQCHEFICNL 604 Query: 1463 EGLYPWELSG-------GMQKRAGLARAIALDPEILLIDEPSASLDP-------PTARRL 1326 + Y ++LS G ++R LARAI P++L++DE +++DP T R+ Sbjct: 605 DKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM 664 Query: 1325 DALIL 1311 D LI+ Sbjct: 665 DCLII 669 >ref|NP_064745.1|gp7 Length = 540 Score = 37.7 bits (86), Expect = 0.016 Identities = 48/202 (23%), Positives = 76/202 (37%), Gaps = 1/202 (0%) Frame = +3 Query: 1911 AEMIATIPVTTACVAASPTR-SALRSACIPRNAPVRAMSSP*VAPFTRPPARSPGTSASA 2087 AE+ A T A ++A+ SA + A A +S A + A TSASA Sbjct: 97 AEVNAEASETAAGLSATAAATSATNAGASETAASASATASATSATNSATSASQAATSASA 156 Query: 2088 VWCR*PASGWWSMVVPTIAPPRIPLASANRVRSGIMAVSARTRGTTRYSTGEIPSVRSAS 2267 ++ + N S A + + TT+ S + + +A+ Sbjct: 157 A---------------AVSEGNAATSETNAANSATSASGSASTATTQASAASVSATNAAT 201 Query: 2268 ISWVTFMVASCAANAPPLRPASVTPVMSAAMSRTMAMPTMSATNASAPKKRSCVIPTNAR 2447 + A+ A NA + A+ T +AA S + T SATNA+ + + + A Sbjct: 202 SA---SNAATSATNAAASQAAAATSETNAAASESTV--TTSATNAATSEANAATSASTAT 256 Query: 2448 MIPTRKLTSATMGRASAPECCT 2513 T TSA+ SA T Sbjct: 257 TQATNAATSASTASTSATNAAT 278 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,787,484 Number of Sequences: 14420 Number of extensions: 297849 Number of successful extensions: 1129 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 984 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1124 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3292395346 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig19 (5157 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.317 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,786,102 Number of Sequences: 14420 Number of extensions: 191989 Number of successful extensions: 832 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 732 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 828 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2527437297 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig20 (5779 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,012,525 Number of Sequences: 14420 Number of extensions: 170831 Number of successful extensions: 768 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 688 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 763 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2823136083 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig21 (5601 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,627,634 Number of Sequences: 14420 Number of extensions: 230576 Number of successful extensions: 1025 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 876 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1018 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2758767365 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig22 (5813 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,122,806 Number of Sequences: 14420 Number of extensions: 253646 Number of successful extensions: 1001 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 909 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 998 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2841719535 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig23 (9971 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_543108.1|putative tail fiber protein 41 0.003 ref|NP_859265.1|hypothetical protein 39 0.011 ref|NP_612899.1|hypothetical protein 39 0.011 ref|NP_859099.1|hypothetical protein 39 0.011 ref|NP_050557.1|hypothetical protein 39 0.011 ref|NP_049519.1|putative tail fiber protein 39 0.011 >ref|NP_543108.1|putative tail fiber protein Length = 490 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/144 (18%), Positives = 61/144 (42%) Frame = -1 Query: 3608 ERAVGSMTAAKEQADSVAESIVRLAEQTQAVGDIVNLVNEISDQTNLLALNAAIEASRAG 3429 E VG + + + ++ D+V E+ Q A AA +AG Sbjct: 69 EYCVGDIAVYDDSRPGTLNDFLTALDEGDLKPDVVKRFEEMVAQAQQSAEAAAESERQAG 128 Query: 3428 EHGKGFSVVAAEVKSLSEQAKKATVEVRRILGEIQKMASRSVVSTEQYSKGMAQATEAAR 3249 +H + + ++L++ ++ T V ++++AS+ + E+ + A +AA Sbjct: 129 QHAADAQKIKGDCQTLADNVQQNTNAVEENTQRVEQLASQVEDTAEEVRQDAEAAKQAAS 188 Query: 3248 SAGETIHSLAGAIAELAETSSHMS 3177 A + + A++ +T++H+S Sbjct: 189 DAEQARDDIDVALSATLKTANHLS 212 >ref|NP_859265.1|hypothetical protein Length = 645 Score = 38.9 bits (89), Expect = 0.011 Identities = 35/128 (27%), Positives = 54/128 (42%) Frame = -1 Query: 3617 RAVERAVGSMTAAKEQADSVAESIVRLAEQTQAVGDIVNLVNEISDQTNLLALNAAIEAS 3438 +A + + +AK +DS + R AE Q D E + + A NA ++ Sbjct: 133 QATQSKESAAASAKSASDSAKTATSRAAEAGQKATD----ATEAATRAVTAAGNAEESST 188 Query: 3437 RAGEHGKGFSVVAAEVKSLSEQAKKATVEVRRILGEIQKMASRSVVSTEQYSKGMAQATE 3258 RAGE K A + + +E+A+ A + GEI K A + VS E+ + A Sbjct: 189 RAGESEKAAGADAEKARQHAEKARLA----QESAGEILKRAEAATVSAEEARRMAENARG 244 Query: 3257 AARSAGET 3234 GET Sbjct: 245 PRGPQGET 252 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 38.9 bits (89), Expect = 0.011 Identities = 35/128 (27%), Positives = 54/128 (42%) Frame = -1 Query: 3617 RAVERAVGSMTAAKEQADSVAESIVRLAEQTQAVGDIVNLVNEISDQTNLLALNAAIEAS 3438 +A + + +AK +DS + R AE Q D E + + A NA ++ Sbjct: 133 QATQSKESAAASAKSASDSAKTATSRAAEAGQKATD----ATEAATRAVTAAGNAEESST 188 Query: 3437 RAGEHGKGFSVVAAEVKSLSEQAKKATVEVRRILGEIQKMASRSVVSTEQYSKGMAQATE 3258 RAGE K A + + +E+A+ A + GEI K A + VS E+ + A Sbjct: 189 RAGESEKAAGADAEKARQHAEKARLA----QESAGEILKRAEAATVSAEEARRMAENARG 244 Query: 3257 AARSAGET 3234 GET Sbjct: 245 PRGPQGET 252 >ref|NP_859099.1|hypothetical protein Length = 645 Score = 38.9 bits (89), Expect = 0.011 Identities = 35/128 (27%), Positives = 54/128 (42%) Frame = -1 Query: 3617 RAVERAVGSMTAAKEQADSVAESIVRLAEQTQAVGDIVNLVNEISDQTNLLALNAAIEAS 3438 +A + + +AK +DS + R AE Q D E + + A NA ++ Sbjct: 133 QATQSKESAAASAKSASDSAKTATSRAAEAGQKATD----ATEAATRAVTAAGNAEESST 188 Query: 3437 RAGEHGKGFSVVAAEVKSLSEQAKKATVEVRRILGEIQKMASRSVVSTEQYSKGMAQATE 3258 RAGE K A + + +E+A+ A + GEI K A + VS E+ + A Sbjct: 189 RAGESEKAAGADAEKARQHAEKARLA----QESAGEILKRAEAATVSAEEARRMAENARG 244 Query: 3257 AARSAGET 3234 GET Sbjct: 245 PRGPQGET 252 >ref|NP_050557.1|hypothetical protein Length = 645 Score = 38.9 bits (89), Expect = 0.011 Identities = 35/128 (27%), Positives = 54/128 (42%) Frame = -1 Query: 3617 RAVERAVGSMTAAKEQADSVAESIVRLAEQTQAVGDIVNLVNEISDQTNLLALNAAIEAS 3438 +A + + +AK +DS + R AE Q D E + + A NA ++ Sbjct: 133 QATQSKESAAASAKSASDSAKTATSRAAEAGQKATD----ATEAATRAVTAAGNAEESST 188 Query: 3437 RAGEHGKGFSVVAAEVKSLSEQAKKATVEVRRILGEIQKMASRSVVSTEQYSKGMAQATE 3258 RAGE K A + + +E+A+ A + GEI K A + VS E+ + A Sbjct: 189 RAGESEKAAGADAEKARQHAEKARLA----QESAGEILKRAEAATVSAEEARRMAENARG 244 Query: 3257 AARSAGET 3234 GET Sbjct: 245 PRGPQGET 252 >ref|NP_049519.1|putative tail fiber protein Length = 645 Score = 38.9 bits (89), Expect = 0.011 Identities = 35/128 (27%), Positives = 54/128 (42%) Frame = -1 Query: 3617 RAVERAVGSMTAAKEQADSVAESIVRLAEQTQAVGDIVNLVNEISDQTNLLALNAAIEAS 3438 +A + + +AK +DS + R AE Q D E + + A NA ++ Sbjct: 133 QATQSKESAAASAKSASDSAKTATSRAAEAGQKATD----ATEAATRAVTAAGNAEESST 188 Query: 3437 RAGEHGKGFSVVAAEVKSLSEQAKKATVEVRRILGEIQKMASRSVVSTEQYSKGMAQATE 3258 RAGE K A + + +E+A+ A + GEI K A + VS E+ + A Sbjct: 189 RAGESEKAAGADAEKARQHAEKARLA----QESAGEILKRAEAATVSAEEARRMAENARG 244 Query: 3257 AARSAGET 3234 GET Sbjct: 245 PRGPQGET 252 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,135,560 Number of Sequences: 14420 Number of extensions: 278507 Number of successful extensions: 1371 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 1135 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1368 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4844251698 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig24 (8933 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_944229.1|NudE nudix hydrolase 35 0.18 ref|NP_932438.1|hypothetical protein 35 0.18 ref|NP_861819.1|NudE nudix hydrolase 33 0.40 >ref|NP_944229.1|NudE nudix hydrolase Length = 183 Score = 34.7 bits (78), Expect = 0.18 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 298 RHAGQIAFPGGKIDPGEESLAAALREAHEEVG 203 R + FPGG +D GE + AA RE EE+G Sbjct: 56 RWDSRFGFPGGMVDAGETLIEAAARECKEEIG 87 >ref|NP_932438.1|hypothetical protein Length = 352 Score = 34.7 bits (78), Expect = 0.18 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = -2 Query: 334 HVLMIRRPMKMSRHAGQIAFPGGKIDPGEESLAAALREAHEEVGLEPARADVMGQL 167 H+L+I R + A +A PGG + E A+RE EEV +E D++G + Sbjct: 224 HILLIERKHAPGKDA--LALPGGHKNANETFQQCAVRELFEEVKIEVKEKDIIGSI 277 >ref|NP_861819.1|NudE nudix hydrolase Length = 152 Score = 33.5 bits (75), Expect = 0.40 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%) Frame = -2 Query: 301 SRHAGQIA----FPGGKIDPGEESLAAALREAHEEVGL---EPARADVMGQ 170 SR G +A P G+++PGE + AA+RE EE G +PA +G+ Sbjct: 32 SRPKGALAHRWDIPKGRVEPGESPIEAAIRECEEETGFTQYDPAFLKDLGE 82 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,441,702 Number of Sequences: 14420 Number of extensions: 408485 Number of successful extensions: 1933 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 1421 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1916 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4323396792 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig25 (9546 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817650.1|gp61 40 0.006 ref|YP_164321.1|hypothetical protein 35 0.15 ref|NP_046877.1|putative non-heme haloperoxidase 34 0.25 >ref|NP_817650.1|gp61 Length = 274 Score = 39.7 bits (91), Expect = 0.006 Identities = 38/143 (26%), Positives = 58/143 (40%) Frame = +2 Query: 5954 DGWTLGLGRCRPRVAARLPPVLLVHGIAMNRQAFEFGVERYALAAHLARAGFDCFSLDXX 6133 DG+ +G+ + V P++ +HG+ ++ A+E L LA+ GF +LD Sbjct: 12 DGFRVGVSQVGTGV-----PLVFLHGLTVSALAYE------ELLIELAQRGFAVTALDAV 60 Query: 6134 XXXXXXXXXXXXXXWNLDTYLREDVPAALDAVRAATGARQVLWVGHSQGALMGLAACQRY 6313 + ALDA+ G Q ++VGHS G M RY Sbjct: 61 NHGRTDSLPFGHTVEEMTRVTLR----ALDAL----GIDQAVFVGHSMGGGMVAEIAPRY 112 Query: 6314 PERIAGIVALAAPAHFDVQERLK 6382 PER+ + L A A + LK Sbjct: 113 PERVLAAILLDAAAGKEHHANLK 135 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 35.0 bits (79), Expect = 0.15 Identities = 47/148 (31%), Positives = 56/148 (37%), Gaps = 31/148 (20%) Frame = +2 Query: 8849 RRPQDGERSRGMGHLRGAGAPALERDPAEQHRRAAGDEAGALQPEA-------------- 8986 +R + G R G G AG L+ D Q RR AGA QP A Sbjct: 339 QRAERGLRDAGAGLPHQAGCGYLQAD-CLQDRRGGPGGAGADQPAARRGVQGQAGRRTVE 397 Query: 8987 --GVDGDEA-------DEREPARDGHALPERRPAQAGEPAHDAPRGEERDGQVRDERG-- 9133 G+ G +A D++EP R LP RR AG D R+GQVR RG Sbjct: 398 RRGLQGADAGGIRARRDDQEPVR---RLPRRR---AGVCRAD----RRREGQVRRLRGPR 447 Query: 9134 ---AGAGLERHAGGER---DHGGAHQHG 9199 G G G R DH G + G Sbjct: 448 QGRVGQGGRARCAGPRLRFDHSGVGEQG 475 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 34.3 bits (77), Expect = 0.25 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 1/125 (0%) Frame = +2 Query: 6011 PVLLVHGIAMNRQAFEFGVERYALAAHLARAGFDCFSLDXXXXXXXXXXXXXXXXWNLDT 6190 P++ +HG++++ +A+E + LA GF +LD +L T Sbjct: 24 PLVFLHGLSVSAKAYE------EMLTRLAEHGFRVIALDAANHGRSG---------SLPT 68 Query: 6191 -YLREDVPAALDAVRAATGARQVLWVGHSQGALMGLAACQRYPERIAGIVALAAPAHFDV 6367 + ED+ + ++ GHS G M + R+P R+A V L A A + Sbjct: 69 GHTVEDMTRVTLKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDAAAGQEH 128 Query: 6368 QERLK 6382 + +K Sbjct: 129 HDNIK 133 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,522,661 Number of Sequences: 14420 Number of extensions: 480742 Number of successful extensions: 2140 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 1657 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2135 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4630490436 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig26 (11,407 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,192,869 Number of Sequences: 14420 Number of extensions: 452343 Number of successful extensions: 1976 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1532 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1972 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 5509026995 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig27 (10,124 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817695.1|gp17 34 0.26 >ref|NP_817695.1|gp17 Length = 553 Score = 34.3 bits (77), Expect = 0.26 Identities = 44/133 (33%), Positives = 48/133 (36%), Gaps = 10/133 (7%) Frame = +2 Query: 5015 DRVVGGHLAVHRHHLQGAVHRAGERVLQRARGHRRVGDQQADGGXXXXXXXXXXXXXXGH 5194 D VV L +HRH L RV QR RV D A G Sbjct: 412 DTVVADRLHLHRHRLYWHPVEPARRVPQRRVF--RVPDAAALPAPLRHGPDAPQHRGHGA 469 Query: 5195 DGGLPAQRHLARGHLR--------PRVGGHDRLGG--EVRVVAELIDERRHRGDHLHGRQ 5344 D G P QR RGHL PR+ H GG E V + R HL R Sbjct: 470 DPGAPVQR---RGHLHIPRHPVRHPRL--HVSAGGSQECPVRPVCVGAR-----HLPRRP 519 Query: 5345 ARADDPGGRGEHR 5383 AD PG R +HR Sbjct: 520 HVADLPGARSDHR 532 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,067,118 Number of Sequences: 14420 Number of extensions: 412043 Number of successful extensions: 1887 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1426 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1881 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 4872395188 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig28 (12,665 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_612844.1|Gp15 protein 84 5e-16 ref|NP_695158.1|minor capsid protein 74 3e-13 ref|NP_943827.1|gp49 72 1e-12 ref|NP_046584.1|putative transglycosylase 62 1e-09 ref|NP_803396.1|tail length tape measure protein 62 1e-09 ref|NP_663686.1|structural protein 60 4e-09 ref|NP_112710.1|ORF47 60 4e-09 ref|NP_108727.1|minor structural protein 3 60 4e-09 ref|NP_076626.1|endopeptidase 60 4e-09 ref|YP_195243.1|hypothetical protein 57 4e-08 ref|NP_058454.1|orf 16 57 5e-08 ref|NP_061640.1|phi PVL ORF 15 and 16 homologue 55 2e-07 ref|NP_835564.1|hypothetical protein 55 2e-07 ref|NP_958615.1|77ORF001 55 2e-07 ref|NP_075512.2|hypothetical protein 49 1e-05 ref|NP_803346.1|tail fiber protein 49 1e-05 ref|NP_777327.1|hypothetical protein 43 7e-04 >ref|NP_612844.1|Gp15 protein Length = 983 Score = 83.6 bits (205), Expect = 5e-16 Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Frame = -2 Query: 7585 GRLTSAFGPRADPFTGVAARHDGVDVAAPEGTXXXXXXXXXXXXXXXXXG-YGNAVEVDH 7409 G +T+ F P +HDG+D P GT YG + VDH Sbjct: 863 GTITATF-----PTYPSGGKHDGIDFGTPIGTPVRVSKDGVVIKRRELTTSYGKYLFVDH 917 Query: 7408 GGGLVTLYGHAAEVRVRPGQVVAAGEELARVGSTGRSTGPHLHFEVRMAGRPVDPARALK 7229 GGGL+T+Y H +E+ V G V G+ +A+ G+TG STGPHLH+E+R+ G P + A +L+ Sbjct: 918 GGGLITIYAHNSELLVNEGDRVKRGQIIAKTGNTGNSTGPHLHWELRVNGIPQNVAPSLR 977 Query: 7228 I 7226 + Sbjct: 978 V 978 >ref|NP_695158.1|minor capsid protein Length = 1608 Score = 74.3 bits (181), Expect = 3e-13 Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 3/114 (2%) Frame = -2 Query: 7576 TSAFGPRADPFTGVAARHDGVDVAAPEGTXXXXXXXXXXXXXXXXXGYGNAVEVDHGGGL 7397 +S +GPRA F H G+D AAP GT G+GN V + G Sbjct: 1246 SSGYGPRAGGF------HKGIDFAAPLGTPIPAQYGGTVVQAGPASGFGNWVVIKPSGAS 1299 Query: 7396 V-TLYGHAAEVRVRPGQVVAAGEELARVGSTGRSTGPHLHFEVR--MAGRPVDP 7244 V T+YGH ++V+ GQ V AG+ +A VGS G+S+GPH+H+E+R + G+ +P Sbjct: 1300 VDTIYGHMKRMKVKTGQHVKAGQIIAWVGSEGQSSGPHVHYELRAGLGGKSYNP 1353 >ref|NP_943827.1|gp49 Length = 429 Score = 72.0 bits (175), Expect = 1e-12 Identities = 52/145 (35%), Positives = 67/145 (46%), Gaps = 10/145 (6%) Frame = -2 Query: 7579 LTSAFGPRADPFTGVAARHDGVDVAAPEGTXXXXXXXXXXXXXXXXXGYGNAVEVDH--- 7409 L+S FGPR ++H G+D AA +GT G+G + +DH Sbjct: 8 LSSGFGPRW------GSQHRGLDFAAKDGTPIYAAQGGTVAYIGRADGFGQWIVIDHPAA 61 Query: 7408 GGGLVTLYGH---AAEVRVRPGQVVAAGEELARVGSTGRSTGPHLHFEVR----MAGRPV 7250 GG T+YGH A +R GQ V AG+ +A VG+ G+STGPHLHFEV G + Sbjct: 62 DGGGTTVYGHMWDAFATGLRQGQRVEAGQLIAYVGTNGQSTGPHLHFEVHPTVWRQGSQI 121 Query: 7249 DPARALKIYARRADEGGRSGP*AGG 7175 DP L D P GG Sbjct: 122 DPKPWLANARNPGDPAPAPAPPKGG 146 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 62.4 bits (150), Expect = 1e-09 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Frame = -2 Query: 7582 RLTSAFGPRADPFTGVAARHDGVDVAAPEGTXXXXXXXXXXXXXXXXXGYGNAVEVDHGG 7403 R++S +G + ++ H G D AA GT GN V + Sbjct: 1563 RVSSKYGQQESGLR--SSPHKGTDFAAKAGTAIKSLQSGKVQIAGYSKTAGNWVVIKQDD 1620 Query: 7402 GLVTLYGHAAEV-RVRPGQVVAAGEELARVGSTGRSTGPHLHFEVRMAGRPVDPARALK 7229 G V Y H V+ GQ V AG+ + +VGSTG STG HLH ++ G+ +DP + ++ Sbjct: 1621 GTVAKYMHMLNTPSVKAGQSVKAGQTIGKVGSTGNSTGNHLHLQIEQNGKTIDPEKYMQ 1679 >ref|NP_803396.1|tail length tape measure protein Length = 1550 Score = 62.0 bits (149), Expect = 1e-09 Identities = 35/93 (37%), Positives = 52/93 (55%) Frame = -2 Query: 7435 YGNAVEVDHGGGLVTLYGHAAEVRVRPGQVVAAGEELARVGSTGRSTGPHLHFEVRMAGR 7256 YG V++ G L +Y H ++ +V+ GQ V G+ + G+TG STGPHLH+E+R GR Sbjct: 1219 YGKWVKIVKGA-LEVIYAHLSKYKVKTGQQVRVGQTVGISGNTGFSTGPHLHYEMRWNGR 1277 Query: 7255 PVDPARALKIYARRADEGGRSGP*AGGRHEDQR 7157 DP + R+ + GG+S P G +R Sbjct: 1278 HRDPLP----WLRKNNGGGKSTPGGNGAANARR 1306 >ref|NP_663686.1|structural protein Length = 908 Score = 60.5 bits (145), Expect = 4e-09 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 3/105 (2%) Frame = -2 Query: 7579 LTSAFGPRADPFTGVAARHDGVDVAAPEGTXXXXXXXXXXXXXXXXXGY---GNAVEVDH 7409 +TS G R P TG H+ +D+ T Y GN + H Sbjct: 782 VTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASNDGQVVQAGSNYYDWYGNYTVIKH 841 Query: 7408 GGGLVTLYGHAAEVRVRPGQVVAAGEELARVGSTGRSTGPHLHFE 7274 GL T Y H + + V GQ V G+++ +G+TG TGPHLHF+ Sbjct: 842 ADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQ 886 >ref|NP_112710.1|ORF47 Length = 918 Score = 60.5 bits (145), Expect = 4e-09 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 3/105 (2%) Frame = -2 Query: 7579 LTSAFGPRADPFTGVAARHDGVDVAAPEGTXXXXXXXXXXXXXXXXXGY---GNAVEVDH 7409 +TS G R P TG H+ +D+ T Y GN + H Sbjct: 792 VTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASGDGQVVQAGSNYYDWYGNYTVIKH 851 Query: 7408 GGGLVTLYGHAAEVRVRPGQVVAAGEELARVGSTGRSTGPHLHFE 7274 GL T Y H + + V GQ V G+++ +G+TG TGPHLHF+ Sbjct: 852 ADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQ 896 >ref|NP_108727.1|minor structural protein 3 Length = 906 Score = 60.5 bits (145), Expect = 4e-09 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 3/105 (2%) Frame = -2 Query: 7579 LTSAFGPRADPFTGVAARHDGVDVAAPEGTXXXXXXXXXXXXXXXXXGY---GNAVEVDH 7409 +TS G R P TG H+ +D+ T Y GN + H Sbjct: 780 VTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASNDGQVVQAGSNYYNWYGNYTVIKH 839 Query: 7408 GGGLVTLYGHAAEVRVRPGQVVAAGEELARVGSTGRSTGPHLHFE 7274 GL T Y H + + V GQ V G+++ +G+TG TGPHLHF+ Sbjct: 840 ADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQ 884 >ref|NP_076626.1|endopeptidase Length = 894 Score = 60.5 bits (145), Expect = 4e-09 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 3/105 (2%) Frame = -2 Query: 7579 LTSAFGPRADPFTGVAARHDGVDVAAPEGTXXXXXXXXXXXXXXXXXGY---GNAVEVDH 7409 +TS G R P TG H+ +D+ T Y GN + H Sbjct: 768 VTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASGDGQVVQAGSNYYDWYGNYTVIKH 827 Query: 7408 GGGLVTLYGHAAEVRVRPGQVVAAGEELARVGSTGRSTGPHLHFE 7274 GL T Y H + + V GQ V G+++ +G+TG TGPHLHF+ Sbjct: 828 ADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQ 872 >ref|YP_195243.1|hypothetical protein Length = 749 Score = 57.4 bits (137), Expect = 4e-08 Identities = 41/111 (36%), Positives = 48/111 (43%), Gaps = 8/111 (7%) Frame = -2 Query: 7582 RLTSAFGPRADPFTGVAARHDGVDVAAPEGTXXXXXXXXXXXXXXXXXGYGNAVEVD--H 7409 ++TS FG RA P + H G+D P+GT GN EV H Sbjct: 542 QITSRFGRRASPGGVGSTNHMGIDYGTPQGTKLAIKKPGRVQKIVVPAP-GNMGEVHIVH 600 Query: 7408 GGGLVTLYGHAAEVRVRPGQVVAAGEELARVG------STGRSTGPHLHFE 7274 G T Y H ++V VR G V AG L G G STGPHLHFE Sbjct: 601 DDGTETRYLHLSKVAVRQGAQVVAGTLLGETGGEPGTPGAGPSTGPHLHFE 651 >ref|NP_058454.1|orf 16 Length = 539 Score = 57.0 bits (136), Expect = 5e-08 Identities = 28/64 (43%), Positives = 40/64 (62%) Frame = -2 Query: 7435 YGNAVEVDHGGGLVTLYGHAAEVRVRPGQVVAAGEELARVGSTGRSTGPHLHFEVRMAGR 7256 YG V++ G L +Y H ++ +V+ GQ V G+ + G+TG STGPHLH+E+R GR Sbjct: 444 YGKWVKIVKGA-LEVIYAHLSKYKVKTGQQVRVGQTVGISGNTGFSTGPHLHYEMRWNGR 502 Query: 7255 PVDP 7244 DP Sbjct: 503 HRDP 506 >ref|NP_061640.1|phi PVL ORF 15 and 16 homologue Length = 1313 Score = 55.1 bits (131), Expect = 2e-07 Identities = 27/64 (42%), Positives = 39/64 (60%) Frame = -2 Query: 7435 YGNAVEVDHGGGLVTLYGHAAEVRVRPGQVVAAGEELARVGSTGRSTGPHLHFEVRMAGR 7256 YG V++ G L +Y H ++ +V+ G V G+ + G+TG STGPHLH+E+R GR Sbjct: 1218 YGKWVKIVKGA-LEVIYAHLSKYKVKTGHQVRVGQTVGISGNTGFSTGPHLHYEMRWNGR 1276 Query: 7255 PVDP 7244 DP Sbjct: 1277 HRDP 1280 >ref|NP_835564.1|hypothetical protein Length = 1509 Score = 54.7 bits (130), Expect = 2e-07 Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Frame = -2 Query: 7435 YGNAVEVDHGGGLVTLYGHAAEVRVRP--GQVVAAGEELARVGSTGRSTGPHLHFEVRMA 7262 YGN V++ G + L+ H P G +V G+ + G+TG STGPHLHFE+R Sbjct: 1174 YGNYVKIT-SGVIDMLFAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPHLHFEMRRN 1232 Query: 7261 GRPVDPARALKIYARRADEGGRSGP*AGG 7175 GR DP + Y R A + GR GG Sbjct: 1233 GRHFDP----EPYLRNAKKKGRLSIGGGG 1257 >ref|NP_958615.1|77ORF001 Length = 1509 Score = 54.7 bits (130), Expect = 2e-07 Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Frame = -2 Query: 7435 YGNAVEVDHGGGLVTLYGHAAEVRVRP--GQVVAAGEELARVGSTGRSTGPHLHFEVRMA 7262 YGN V++ G + L+ H P G +V G+ + G+TG STGPHLHFE+R Sbjct: 1174 YGNYVKIT-SGVIDMLFAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPHLHFEMRRN 1232 Query: 7261 GRPVDPARALKIYARRADEGGRSGP*AGG 7175 GR DP + Y R A + GR GG Sbjct: 1233 GRHFDP----EPYLRNAKKKGRLSIGGGG 1257 >ref|NP_075512.2|hypothetical protein Length = 2067 Score = 49.3 bits (116), Expect = 1e-05 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 6/106 (5%) Frame = -2 Query: 7528 RHDGVDVAAPEGTXXXXXXXXXXXXXXXXXGYGNAVEVDHGGGLVTLYGHAAEVRVRPGQ 7349 RH G+D P GT G GN++++ G Y H ++ R GQ Sbjct: 1707 RHYGIDFGMPSGTNVYAVKGGIADKVWTDYGGGNSIQIKTGANEWNWYMHLSKQLARQGQ 1766 Query: 7348 VVAAGEELARVGSTGRST-GPHLHFEVRMAGRP-----VDPARALK 7229 + AG+ + + G+TG G HLHF++ P DP + LK Sbjct: 1767 RIKAGQLIGKSGATGNFVRGAHLHFQLMQGSHPGNDTAKDPEKWLK 1812 >ref|NP_803346.1|tail fiber protein Length = 2066 Score = 48.9 bits (115), Expect = 1e-05 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 6/106 (5%) Frame = -2 Query: 7528 RHDGVDVAAPEGTXXXXXXXXXXXXXXXXXGYGNAVEVDHGGGLVTLYGHAAEVRVRPGQ 7349 RH G+D P GT G GN++++ G Y H ++ R GQ Sbjct: 1706 RHYGIDFGMPTGTNIYAVKGGIADKVWTDYGGGNSIQIKTGANEWNWYMHLSKQLARQGQ 1765 Query: 7348 VVAAGEELARVGSTGRST-GPHLHFEVRMAGRP-----VDPARALK 7229 + AG+ + + G+TG G HLHF++ P DP + LK Sbjct: 1766 RIKAGQLIGKSGATGNFVRGAHLHFQLMQGSHPGNDTAKDPEKWLK 1811 >ref|NP_777327.1|hypothetical protein Length = 196 Score = 43.1 bits (100), Expect = 7e-04 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = -2 Query: 7435 YGNAVEVDH-GGGLVTLYGHAAEVRVRPGQVVAAGEELARVGSTGRSTGPHLHFEV 7271 +G V + H G+ T YGH ++ V PG VV AG+++ +G HLHF+V Sbjct: 86 WGGMVVLWHPSAGVWTRYGHLRDILVHPGDVVVAGQQIGTIGKMTTGGYCHLHFDV 141 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,775,850 Number of Sequences: 14420 Number of extensions: 507695 Number of successful extensions: 2614 Number of sequences better than 0.5: 17 Number of HSP's better than 0.5 without gapping: 1826 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2602 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 6074407394 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig29 (13,388 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_075289.1|gp22 35 0.20 ref|NP_958267.1|hypothetical protein 34 0.45 ref|NP_047965.1|gp20 34 0.45 >ref|NP_075289.1|gp22 Length = 823 Score = 35.0 bits (79), Expect = 0.20 Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 11/210 (5%) Frame = -3 Query: 8898 FRRIVEGVNATLDAVIGPIGAAAACVDRIARGDLPAAIDERWAGDFDALKASLNGCIGAV 8719 F I V+A +V+ G + + AA+ + A+ +G V Sbjct: 436 FATIGAAVSAGARSVVNTAGNIFRSMGSVIANAFSAAVSAVQTAFSQMVSAAASGAQQVV 495 Query: 8718 NALVADAGLLSRAALD-GKLDVRAEAARHQGVYREIVEGTNETLTAVVAPIRDVAAVLGR 8542 + A G ++ AA + G + V A A G+ I G + L +AAV G Sbjct: 496 AEVQALGGKIAAAAGNFGSILVAAGKALMDGLLSGIKAGLSAVLDFASGIAAKIAAVKGP 555 Query: 8541 LADGDLSARADAARYRNESRAMLEGVNATLDALLAPVHEAAQALGRLAERDLRVRMG--- 8371 L D A++EG+ ++ L PV + A+ + + + G Sbjct: 556 LPK-------DRKELIPAGEALMEGLGTGIENGLDPVLDRAREIAKQIFSAFKETFGTAP 608 Query: 8370 -------GAYRGDHARLKEALNETATALHD 8302 G+ +GD + L+ +L TATA D Sbjct: 609 TSLAFNLGSMQGDLSGLQTSLESTATASRD 638 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 33.9 bits (76), Expect = 0.45 Identities = 36/119 (30%), Positives = 38/119 (31%), Gaps = 8/119 (6%) Frame = -2 Query: 2191 RQPRHRVRDAPRRNLGGEPAEGGPARVHLAAEQHEVXXXXXXXXXXXXXXXXDGGEVVLA 2012 R PR R R P G ARV E G V Sbjct: 133 RAPRTRTRAVPL---------GPGARVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRR 183 Query: 2011 AAVRAAGHRDGQRHRPGPGD-----RAPHRFLDQ---PRERAGPRHREPAHVGARARDH 1859 R G R R RPGPG R PH + PR R G RHR A + R R H Sbjct: 184 RGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRRHRRRASLRPRHRRH 242 >ref|NP_047965.1|gp20 Length = 117 Score = 33.9 bits (76), Expect = 0.45 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Frame = +1 Query: 11470 GTSYHDFSNGFPGNMNNCATCHQGDRLAAAANAPVS-FALCVSCHDDLGAFPAAPSSGAY 11646 GT Y+ +G PG + C +G +L+A AP S +A CV+ H + A APS+ Sbjct: 25 GTGYNGAPSGVPG-CASAGACPRG-QLSAVECAPNSDYANCVADHAERNAIRHAPSAELA 82 Query: 11647 NHAAFTPFSSCSPC 11688 +T C C Sbjct: 83 GATLYTTREPCPAC 96 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,888,867 Number of Sequences: 14420 Number of extensions: 570648 Number of successful extensions: 2383 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 1837 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2377 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 6430248955 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig30 (12,968 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_932427.1|hypothetical protein 34 0.44 >ref|NP_932427.1|hypothetical protein Length = 484 Score = 33.9 bits (76), Expect = 0.44 Identities = 70/267 (26%), Positives = 108/267 (40%), Gaps = 43/267 (16%) Frame = -3 Query: 8451 VAAGLEHAMDLVAHLRFSDEDLAWLATQAGAD-GAPLFEGGFLDALRALE-----VDVDV 8290 V G+E+ M + + ++ED+A + + A G +F D + A + + + + Sbjct: 43 VIGGIEYMMTKLQEI-ITNEDVAEMHEMSKAHFGQDVFNRKGWDEVVAYQQKHGCLPIQI 101 Query: 8289 DAAPEGTVVFPTEPLVRVTGPVIPCMLL----ETPLLAVVNFQTLVATKAARVCLA---- 8134 DA PEGTVV P + +V P + E +L V + + VAT +R C+A Sbjct: 102 DAVPEGTVV-PVKNVVLTVRCKAPYTWVAGWFEPVILRAVWYTSTVAT-LSRECIAMIRK 159 Query: 8133 --------AGGDPVLEFGLRRAQGIDG--GLAASRAAYVGGCAATSNT----------LA 8014 P F L G G+++ +A +GG A N+ LA Sbjct: 160 HLIDTTDLVVDSPEFNFVLMTRLHDFGSRGVSSGESAALGGMAHLYNSMGTDTFESLYLA 219 Query: 8013 ARLYGIPGKG----THAHSWVMLHASER--EAFLEYAKAMPANCVFLVDTYGSLDGIRNA 7852 LYG G HS V +ER EA++ + +V Y S D R Sbjct: 220 KHLYGAKMAGISVPAREHSTVTSWGAERETEAYMNSVRLFGTGAYSVV--YDSTDFKRAV 277 Query: 7851 VEVGRWLRE---HGHELLGVRLDSGDL 7780 E+ + E G L+ VR DSGD+ Sbjct: 278 REIEGYKDEVIAKGGTLI-VRPDSGDM 303 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,237,273 Number of Sequences: 14420 Number of extensions: 675140 Number of successful extensions: 3163 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 2279 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3155 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 6223536015 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig31 (14,230 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_064745.1|gp7 37 0.043 ref|YP_024827.1|Pas41 37 0.056 ref|YP_006961.1|L-shaped tail fiber protein 34 0.48 >ref|NP_064745.1|gp7 Length = 540 Score = 37.4 bits (85), Expect = 0.043 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 10/118 (8%) Frame = +3 Query: 2100 SAVTTIENANRSANPAAYRATSQPITRDATENAARNVANSASGASGFAPTAPRSLPPSDQ 2279 ++ T+ N+ SA+ AA A++ ++ + N ANSA+ ASG A TA + Sbjct: 135 ASATSATNSATSASQAATSASAAAVSEGNAATSETNAANSATSASGSASTATTQASAASV 194 Query: 2280 VGNESAVAETARAPPRKNAVVT----------ARTSPSAIRIAQVSSRRCQGRAAVTA 2423 +A + + A NA + A S S + + ++ + AA +A Sbjct: 195 SATNAATSASNAATSATNAAASQAAAATSETNAAASESTVTTSATNAATSEANAATSA 252 >ref|YP_024827.1|Pas41 Length = 165 Score = 37.0 bits (84), Expect = 0.056 Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = -2 Query: 4131 KRAASPAHRIH-GPEPEERDASTRERRNGRLAAGRDRRHLHPRHGGARDAEGRPEVGHRG 3955 KRA + A + GP +R A R+RR GR R RR LHP G R + RPE R Sbjct: 95 KRARAEADLVERGPRRRDR-AGRRQRRPGR-PGRRGRRGLHPPDRGRRGSTPRPEPARR- 151 Query: 3954 GPAGVP 3937 P G P Sbjct: 152 TPTGTP 157 >ref|YP_006961.1|L-shaped tail fiber protein Length = 1396 Score = 33.9 bits (76), Expect = 0.48 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 3/107 (2%) Frame = +3 Query: 2100 SAVTTIENANRSANPAAYRATSQPITRDATENAARNVANSASGASGFAPTA---PRSLPP 2270 +A T+ NAN S N A + + N A+SAS AS FA A R+ Sbjct: 105 AAKTSETNANNSKN--------------AAKTSETNAASSASSASSFATAAENSARAAKT 150 Query: 2271 SDQVGNESAVAETARAPPRKNAVVTARTSPSAIRIAQVSSRRCQGRA 2411 S+ SA A A N+ A+TS + + ++ +++ + A Sbjct: 151 SETNAGNSAQAADASKTAAANSATAAKTSETNAKKSETAAKTSETNA 197 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,067,772 Number of Sequences: 14420 Number of extensions: 748371 Number of successful extensions: 3298 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 2249 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3287 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 6775376034 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig32 (15,182 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817947.1|gp96 80 6e-15 ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase access... 42 0.001 ref|NP_891600.1|Gp44 42 0.002 ref|NP_803852.1|ORF286 38 0.027 ref|NP_705640.2|gp14 38 0.035 ref|NP_944323.1|gp15 38 0.035 ref|NP_932394.1|DNA polymerase accessory protein 37 0.060 ref|NP_943898.1|gp44 clamp loader subunit 34 0.39 >ref|NP_817947.1|gp96 Length = 566 Score = 80.1 bits (196), Expect = 6e-15 Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 6/216 (2%) Frame = +3 Query: 10320 FADVAGVDEAKD-ELKEIVTFLKDPKSYGRLGARMPKGVLLVGPPGTGKTLLAKAVAGEA 10496 F +V G+D K+ +++ + + + ++Y ++PKG +L+G G GKTL +A+ E Sbjct: 281 FDNVGGLDVFKEWAIRQKIAYSPEARAYN---LKLPKGAMLIGVSGCGKTLSCQALGAEW 337 Query: 10497 SVPFFSISGSEFVEMFVGVGAARVRDLFEQARAKAPAIIFIDELDALGRARASMPGMSGG 10676 + P + + +VG +R+R +F + A I++IDE++ +A +SG Sbjct: 338 NWPVVRLDINALKGKYVGESESRLRGIFSKIDALGQVIVYIDEVE-----KALEGAVSGS 392 Query: 10677 HD--EKEQTLNQLLVELDGFDPSAGIVLLAATNRPEILDPALLRAGRFDRQVLVDRPDRV 10850 D L +L + D + ++ N P L P LR GRFD +D P R Sbjct: 393 ADGGVSADALGAILTWMQ--DRAGQAFVMMTANDPSKLPPEFLRKGRFDEVWWIDLPTRA 450 Query: 10851 GRLAILKVHTQRVVLDD---GVKLEEVAALTPGFTG 10949 R+++ + D G+ L VA T GFTG Sbjct: 451 ERMSVAAATLRSNGRDAETLGIDLGAVADATNGFTG 486 >ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase accessory protein Length = 320 Score = 42.4 bits (98), Expect = 0.001 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 1/160 (0%) Frame = +3 Query: 10416 RMPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEMFV-GVGAARVRDLFEQAR 10592 ++P +L PGTGKT +AKA+ + + ++GS+ FV G A R + + + Sbjct: 41 KLPHIILHSPSPGTGKTTVAKALCNDINAEMMFVNGSDCKIDFVRGPLTAFARSVSMEGK 100 Query: 10593 AKAPAIIFIDELDALGRARASMPGMSGGHDEKEQTLNQLLVELDGFDPSAGIVLLAATNR 10772 P +I IDE D G A E ++ L + E S +++ A N Sbjct: 101 ---PKVIVIDEFDRSGLA------------ESQRHLRTFMEEFS----SNCSIIITANNI 141 Query: 10773 PEILDPALLRAGRFDRQVLVDRPDRVGRLAILKVHTQRVV 10892 I++P R R + RP +++++K R+V Sbjct: 142 DGIIEPLRSRC----RVIEFGRPTEEDKISMMKKMIHRMV 177 >ref|NP_891600.1|Gp44 Length = 324 Score = 42.0 bits (97), Expect = 0.002 Identities = 63/244 (25%), Positives = 94/244 (38%), Gaps = 18/244 (7%) Frame = +3 Query: 10416 RMPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEMFVGVGAARVR---DLFEQ 10586 R+P +L PGTGKT +AKA+ + V + ++G++ F+ R L E+ Sbjct: 41 RIPSMILHSPSPGTGKTTVAKALCEDVGVDYLFVNGADCKIDFIRDEITRFAQSVSLDEE 100 Query: 10587 ARAKAPAIIFIDELDALGRARASMPGMSGGHDEKEQTLNQLLVELDGFDP--SAGIVLLA 10760 R K +I IDE D G A A L F S + + Sbjct: 101 KREKGKVVI-IDEYDRAGLADAQR-------------------HLRSFSEAYSNNVTFII 140 Query: 10761 ATNRPEILDPALLRAGRFDRQVLVDRPDRVGRLAILK---VHTQRVVLDDGVKLEEVAAL 10931 N E + PAL RFD + P + +L ++K V + ++ +GV +EE+ L Sbjct: 141 TANDLEGIIPAL--RSRFD-PITFGSPTKDDQLRMMKEMIVRCKAILDKEGVPVEEMRVL 197 Query: 10932 T----PGFTGXXXXXXXXXXXXXXTRRDAEKISM--EDFNVAVERIVAGLEKKN----RL 11081 F + DA +SM E N V +V L+ K R Sbjct: 198 AELVKQNFPDFRRVMKLLDRYAKHGKIDAGVLSMVIESSNTEVTDVVEALKTKQFANVRK 257 Query: 11082 LNPR 11093 L PR Sbjct: 258 LAPR 261 >ref|NP_803852.1|ORF286 Length = 508 Score = 38.1 bits (87), Expect = 0.027 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +3 Query: 10344 EAKDE-LKEIVTFLKDPKSYGRLGARMPKGVLLVGPPGTGKTLLAKAVA 10487 E K+E L +I F D K Y G +L GPPGTGKT ++KA+A Sbjct: 199 EIKEEFLNKIEEFYSDRKWYDDRGLPYKFTCVLTGPPGTGKTSISKAIA 247 Score = 38.1 bits (87), Expect = 0.027 Identities = 21/44 (47%), Positives = 25/44 (56%) Frame = +3 Query: 10695 TLNQLLVELDGFDPSAGIVLLAATNRPEILDPALLRAGRFDRQV 10826 TL+ LL LDG P + + TN PE +D ALLR GR D V Sbjct: 407 TLSALLNGLDGIVPLDETMTILTTNHPENIDKALLRKGRVDYMV 450 >ref|NP_705640.2|gp14 Length = 463 Score = 37.7 bits (86), Expect = 0.035 Identities = 47/180 (26%), Positives = 69/180 (38%), Gaps = 20/180 (11%) Frame = -3 Query: 12648 HLQVHERRRAAGAGQELVAHVHPAGEADPAVHHQDLA---VVAQVHERQPGRGEARQEQL 12478 H+ + + RA+GA HV A +P + L + QPG G Sbjct: 164 HVALVDDGRASGA------HVADAAFREPRAPNPTLNGDNAMPFPENEQPGAG------- 210 Query: 12477 GPHAQPAQAAVDGRPAVADADG-------------VHQHPHLHAALVRPGQRVGEGVAGQ 12337 P A AQ A D PA A+ G V Q+ HAA+++ +++G G A Sbjct: 211 APPAAGAQPA-DAAPAGAEGGGNELATIGAALKQLVEQNAQAHAAILQKLEQLGGGAAPA 269 Query: 12336 PGVEDVRAEGDRVVGRVDGLEHGRVGEAAAGQERDGVPG----DERAAHHRVGERHQRRE 12169 PG +D G DG+ + G E D +PG +E R + H+ E Sbjct: 270 PGAQD---------GEPDGV------RSPQGSEDDEMPGAEDNEEEGPTPRADDEHESAE 314 >ref|NP_944323.1|gp15 Length = 463 Score = 37.7 bits (86), Expect = 0.035 Identities = 47/180 (26%), Positives = 69/180 (38%), Gaps = 20/180 (11%) Frame = -3 Query: 12648 HLQVHERRRAAGAGQELVAHVHPAGEADPAVHHQDLA---VVAQVHERQPGRGEARQEQL 12478 H+ + + RA+GA HV A +P + L + QPG G Sbjct: 164 HVALVDDGRASGA------HVADAAFREPRAPNPTLNGDNAMPFPENEQPGAG------- 210 Query: 12477 GPHAQPAQAAVDGRPAVADADG-------------VHQHPHLHAALVRPGQRVGEGVAGQ 12337 P A AQ A D PA A+ G V Q+ HAA+++ +++G G A Sbjct: 211 APPAAGAQPA-DAAPAGAEGGGNELATIGAALKQLVEQNAQAHAAILQKLEQLGGGAAPA 269 Query: 12336 PGVEDVRAEGDRVVGRVDGLEHGRVGEAAAGQERDGVPG----DERAAHHRVGERHQRRE 12169 PG +D G DG+ + G E D +PG +E R + H+ E Sbjct: 270 PGAQD---------GEPDGV------RSPQGSEDDEMPGAEDNEEEGPTPRADDEHESAE 314 >ref|NP_932394.1|DNA polymerase accessory protein Length = 319 Score = 37.0 bits (84), Expect = 0.060 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Frame = +3 Query: 10416 RMPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEMFVGVGAARVRDLF----- 10580 R+P +L PGTGKT +A+A+ E F ++G++ F VRD+ Sbjct: 41 RIPNIILHSPSPGTGKTTVARALVAEIDAEFLFVNGADAKIDF-------VRDVMTPFAS 93 Query: 10581 EQARAKAPAIIFIDELDALGRA 10646 + K +I +DE D G A Sbjct: 94 SKTFCKGGKVIIVDEFDRAGLA 115 >ref|NP_943898.1|gp44 clamp loader subunit Length = 321 Score = 34.3 bits (77), Expect = 0.39 Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 11/183 (6%) Frame = +3 Query: 10416 RMPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEMFVGVGAARVRDL------ 10577 R+P +L PGTGKT +A+ + E ISG G R+ DL Sbjct: 43 RIPHILLFSKSPGTGKTTMARVLCNEIDAEVMFISG----------GKLRIDDLRNDLTA 92 Query: 10578 FEQARAKAPA--IIFIDELDALGRARASMPGMSGGHDEKEQTLNQLLVELDGFDPSAGIV 10751 F + P +I IDE D GM H+E L ++ F + ++ Sbjct: 93 FASTMTRKPGGKVIIIDEGD--------NKGMKAVHEE-------LRSWMEAFSSNCSVI 137 Query: 10752 LLAATNRPEILDPALLRAGRFDRQVLVDRPDRVGRLAILK---VHTQRVVLDDGVKLEEV 10922 + N E + P L++ RF RQ+ P + +L ++K V + + +GV +E Sbjct: 138 M--TCNNVEAI-PGPLKS-RF-RQIEFGNPTQDDKLRMMKEMIVRCETICEMEGVVVESR 192 Query: 10923 AAL 10931 A+ Sbjct: 193 KAI 195 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,425,808 Number of Sequences: 14420 Number of extensions: 760639 Number of successful extensions: 3414 Number of sequences better than 0.5: 8 Number of HSP's better than 0.5 without gapping: 2392 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3402 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 7240324152 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig33 (14,721 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164321.1|hypothetical protein 35 0.22 ref|NP_938235.1|virion morphogenesis protein 35 0.22 ref|NP_958252.1|hypothetical protein 34 0.38 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 35.0 bits (79), Expect = 0.22 Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 5/166 (3%) Frame = +1 Query: 10771 HRLAHGRDRLQVARLHLGRAHRRVRLHRVEVQLERVGAGLLDVAGELGPAAGGRAVQAGD 10950 H HG ++ L G+ +RV+ R + ++R GL D L AG +QA Sbjct: 308 HAPEHGAAPVRGRPLPRGKPDQRVQ--RADQPVQRAERGLRDAGAGLPHQAGCGYLQADC 365 Query: 10951 DRDLQRALGALDERQVLVRPDPLRREVGAHVGARPGRAVERRGDGRAGRLELLLEQRAEH 11130 +D + G Q R ++ + G R G G RA R + +R Sbjct: 366 LQDRRGGPGGAGADQPAARRG-VQGQAGRRTVERRGLQGADAGGIRARRDDQEPVRRLPR 424 Query: 11131 HRAGAVRLRR-----LQVLHPVRQGGRGEHDRARQREPHVLGDEVG 11253 RAG R R ++ L RQG G+ RAR P + D G Sbjct: 425 RRAGVCRADRRREGQVRRLRGPRQGRVGQGGRARCAGPRLRFDHSG 470 >ref|NP_938235.1|virion morphogenesis protein Length = 428 Score = 35.0 bits (79), Expect = 0.22 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = +3 Query: 7251 VDATVTPGIFRSRSRPLKPIPCARRWQGAWYATLPPGGAD-AKLASKRGSLRIDQRNSET 7427 VD G R R L+PI A+ W G P GGA+ A+L S R I Q N ++ Sbjct: 66 VDNLERGGTLRDFQRNLRPILEAKGWWGRQIVVAPDGGAEVAQLGSPRRLETIYQTNMQS 125 Query: 7428 SITAG 7442 + AG Sbjct: 126 AYMAG 130 >ref|NP_958252.1|hypothetical protein Length = 263 Score = 34.3 bits (77), Expect = 0.38 Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 5/115 (4%) Frame = +1 Query: 5326 WDSVVYWALDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFST--LIRPEAAAA--AID 5493 W A DLET G+D +D I+ + + E + + PE A A I Sbjct: 2 WHKARMVAFDLETTGVDVEQDRIVTAAAIDLGAEKPLTLEWLADPGIEIPEGATAVHGIT 61 Query: 5494 PGSIRAHQLVPHDVATAPSLDSVLADVDLRAREGALLV-HQASLDVAFLKRAYRR 5655 R H HDV +D V + LR R+G +V H D+ L R RR Sbjct: 62 TEHAREHGERAHDV-----VDQVAETLALRVRDGVPVVGHNVPYDLTLLDRECRR 111 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,405,811 Number of Sequences: 14420 Number of extensions: 769539 Number of successful extensions: 3489 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 2330 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3470 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 7015160598 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig34 (20,795 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 37 0.081 ref|NP_612899.1|hypothetical protein 36 0.18 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 37.0 bits (84), Expect = 0.081 Identities = 31/92 (33%), Positives = 35/92 (38%), Gaps = 12/92 (13%) Frame = -2 Query: 11998 RPQEHRHPARRQRLGHREPDPAVRARDERGPAGRAIGSGHADGMRRIRPRVKPPGAGPR- 11822 RP H PAR + H EPD R R P+ A G + R RPR + P P Sbjct: 36 RPHPHLGPARDRSPDHPEPDHPCR----RAPSRPAAGPRRHPPVARTRPRTRAPECAPDP 91 Query: 11821 -----------APAQEGLPRGEAAPAGTSRGP 11759 APA P E APA R P Sbjct: 92 GPAVHPAAPGCAPAAPAAP--EYAPALRPRAP 121 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 35.8 bits (81), Expect = 0.18 Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 6/93 (6%) Frame = -2 Query: 12028 GGLGARG--GVARPQEHRHPAR-RQRLGHREPDPAVRARDERGPAGRAIGSGHADGMRRI 11858 G +GARG G P+ PA R G P + AR ERG G Sbjct: 356 GPMGARGERGDTGPRGEPGPAGPRGERGETGPQGPMGARGERGETG-------------- 401 Query: 11857 RPRVKPPGAGPRAPAQE---GLPRGEAAPAGTS 11768 PR +P AGPR E PRGE PAG++ Sbjct: 402 -PRGEPGPAGPRGERGETGPQGPRGEPGPAGSA 433 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,775,106 Number of Sequences: 14420 Number of extensions: 924301 Number of successful extensions: 4306 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 2702 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4259 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 9776273281 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig35 (19,022 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046877.1|putative non-heme haloperoxidase 57 5e-08 ref|NP_817650.1|gp61 47 9e-05 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 57.4 bits (137), Expect = 5e-08 Identities = 40/103 (38%), Positives = 51/103 (49%), Gaps = 1/103 (0%) Frame = -1 Query: 11792 GPPLVLLHGGGSSIETSFASLLPALARHR-RVIAFDQQGHGRTADLPDRPFTFEQSADDT 11616 G PLV LHG S + ++ +L LA H RVIA D HGR+ LP T E T Sbjct: 22 GAPLVFLHGLSVSAK-AYEEMLTRLAEHGFRVIALDAANHGRSGSLP-TGHTVEDMTRVT 79 Query: 11615 AALLRHLGVARADLFGFSNGGTIALQVAVRHPALVRRLVVASA 11487 L L + RA G S GG + +++A RHP V V+ A Sbjct: 80 LKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDA 122 >ref|NP_817650.1|gp61 Length = 274 Score = 46.6 bits (109), Expect = 9e-05 Identities = 35/107 (32%), Positives = 47/107 (43%) Frame = -1 Query: 11792 GPPLVLLHGGGSSIETSFASLLPALARHRRVIAFDQQGHGRTADLPDRPFTFEQSADDTA 11613 G PLV LHG S L+ R V A D HGRT LP T E+ T Sbjct: 24 GVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFG-HTVEEMTRVTL 82 Query: 11612 ALLRHLGVARADLFGFSNGGTIALQVAVRHPALVRRLVVASAMVRRD 11472 L LG+ +A G S GG + ++A R+P V ++ A ++ Sbjct: 83 RALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILLDAAAGKE 129 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,595,935 Number of Sequences: 14420 Number of extensions: 797061 Number of successful extensions: 3466 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 2448 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3458 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 8929216030 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig36 (14,635 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_024800.1|Pas14 34 0.49 >ref|YP_024800.1|Pas14 Length = 570 Score = 33.9 bits (76), Expect = 0.49 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 5/51 (9%) Frame = -2 Query: 8754 AAGLRQPGGPHEGRAGDPAPDPLRAPEPE-----PGAVPGHRPLRPGVLPE 8617 AAGL P A PAP+P+ AP+P P AVP L P PE Sbjct: 77 AAGLAPEPTPEPTPAPTPAPEPVPAPDPTGTPPVPAAVPAGGTLDPAPEPE 127 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,177,976 Number of Sequences: 14420 Number of extensions: 690855 Number of successful extensions: 3074 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 2167 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3020 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 6972759669 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig37 (14,652 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_892049.1|capsid protein 86 8e-17 ref|NP_944889.1|unknown 82 2e-15 ref|NP_944888.1|unknown 82 2e-15 ref|NP_536361.1|putative capsid assembly protein 81 3e-15 ref|NP_918994.1|putative head-tail preconnector protein 80 6e-15 ref|YP_006585.1|putative head maturation protease 79 1e-14 ref|NP_040584.1|capsid component 77 7e-14 ref|NP_046900.1|gp5 68 2e-11 ref|NP_758917.1|ORF24 44 6e-04 ref|NP_813780.1|internal virion protein D 38 0.034 ref|NP_203471.1|virion structural protein 34 0.37 ref|NP_817868.1|gp17 34 0.49 >ref|NP_892049.1|capsid protein Length = 303 Score = 86.3 bits (212), Expect = 8e-17 Identities = 60/198 (30%), Positives = 96/198 (48%) Frame = -1 Query: 5187 EDILKRIRRFADDGDLKAVVIRVDSPGGSVGASQEIHDEVKRLAQKKVVVCSMGNLAASG 5008 E I + + +D + +V+ + GG+V +E+ D + K + A S Sbjct: 92 ERIRAQFTKALNDPSVSEIVLDFYTGGGAVSGCKELADYIFASRSVKPSTAIVNYNAFSA 151 Query: 5007 GLYVSVACPKIVANPGTLTGSIGVISQFPNVKDLAEKLGVKVETVKTGKLKDAGNPFRDM 4828 G +++ AC +IV + + GSIGVI + L E++G+K T G K+AG+P + Sbjct: 152 GYFMASACSRIVVSHTSGVGSIGVILEHMEASKLEEQIGLKFTTFYRGDFKNAGSPHEPL 211 Query: 4827 TPEDRAYWQGLVENTLGQFVKAVAEGRKLDEAKVRAIADGRVLTGAQAKEAGLVDQLGNF 4648 T E AY Q L+++ F +VAE R +D +V R G A +AGL D+L + Sbjct: 212 TDEATAYLQQLIDDAYETFTTSVAEYRGIDVQRV-IDTQARTFFGQAAVDAGLADELSDP 270 Query: 4647 YDAVELAKQEAKLSGEPV 4594 A+ AK S +PV Sbjct: 271 QTAIN--NIAAKYSPKPV 286 >ref|NP_944889.1|unknown Length = 418 Score = 82.0 bits (201), Expect = 2e-15 Identities = 46/165 (27%), Positives = 80/165 (48%) Frame = -1 Query: 5151 DGDLKAVVIRVDSPGGSVGASQEIHDEVKRLAQKKVVVCSMGNLAASGGLYVSVACPKIV 4972 D +K +V+ +DS GG E+ + +K ++ + A S ++ + +I+ Sbjct: 72 DESIKTIVLHIDSGGGEASGCFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEII 131 Query: 4971 ANPGTLTGSIGVISQFPNVKDLAEKLGVKVETVKTGKLKDAGNPFRDMTPEDRAYWQGLV 4792 A+P GSIGVI + EK GV + +K G+ K G+PF+ ++ E + Q + Sbjct: 132 ASPDADVGSIGVIMVHQELTKAFEKNGVTINVIKAGEFKGMGSPFQALSEESKERLQKRI 191 Query: 4791 ENTLGQFVKAVAEGRKLDEAKVRAIADGRVLTGAQAKEAGLVDQL 4657 +T F VAE R L E V+ + V + +A E GL++ + Sbjct: 192 NDTYATFTGFVAESRNLSEEAVKN-TEANVYSAQEALELGLINSI 235 >ref|NP_944888.1|unknown Length = 448 Score = 82.0 bits (201), Expect = 2e-15 Identities = 46/165 (27%), Positives = 80/165 (48%) Frame = -1 Query: 5151 DGDLKAVVIRVDSPGGSVGASQEIHDEVKRLAQKKVVVCSMGNLAASGGLYVSVACPKIV 4972 D +K +V+ +DS GG E+ + +K ++ + A S ++ + +I+ Sbjct: 102 DESIKTIVLHIDSGGGEASGCFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEII 161 Query: 4971 ANPGTLTGSIGVISQFPNVKDLAEKLGVKVETVKTGKLKDAGNPFRDMTPEDRAYWQGLV 4792 A+P GSIGVI + EK GV + +K G+ K G+PF+ ++ E + Q + Sbjct: 162 ASPDADVGSIGVIMVHQELTKAFEKNGVTINVIKAGEFKGMGSPFQALSEESKERLQKRI 221 Query: 4791 ENTLGQFVKAVAEGRKLDEAKVRAIADGRVLTGAQAKEAGLVDQL 4657 +T F VAE R L E V+ + V + +A E GL++ + Sbjct: 222 NDTYATFTGFVAESRNLSEEAVKN-TEANVYSAQEALELGLINSI 265 >ref|NP_536361.1|putative capsid assembly protein Length = 301 Score = 81.3 bits (199), Expect = 3e-15 Identities = 52/194 (26%), Positives = 94/194 (48%) Frame = -1 Query: 5187 EDILKRIRRFADDGDLKAVVIRVDSPGGSVGASQEIHDEVKRLAQKKVVVCSMGNLAASG 5008 E + + + D ++ +V+ +DS GGS + E+ D+++ + K + + A SG Sbjct: 83 EGLRSAVNQAVADPAVEHIVLDIDSNGGSATGAFELADDIRAASLVKPITAIVNFSAFSG 142 Query: 5007 GLYVSVACPKIVANPGTLTGSIGVISQFPNVKDLAEKLGVKVETVKTGKLKDAGNPFRDM 4828 G ++ A K++ + + GSIGVI+ +V E+ G+KV +V G K+ P + Sbjct: 143 GYLIAAAASKVIVSRTSGVGSIGVIANHLDVSKRDEQQGIKVTSVFAGDHKNDLTPHEPL 202 Query: 4827 TPEDRAYWQGLVENTLGQFVKAVAEGRKLDEAKVRAIADGRVLTGAQAKEAGLVDQLGNF 4648 + + + +V+N+ QFV A+A R L V+ G + G + EAGL D + Sbjct: 203 SDQSLTFLTSMVQNSYKQFVDAIANFRGLSTQAVKDTQAG-IFFGQKGVEAGLADSVETP 261 Query: 4647 YDAVELAKQEAKLS 4606 A+ E + S Sbjct: 262 QAAINRIAAEVRAS 275 >ref|NP_918994.1|putative head-tail preconnector protein Length = 355 Score = 80.1 bits (196), Expect = 6e-15 Identities = 46/172 (26%), Positives = 84/172 (48%) Frame = -1 Query: 5151 DGDLKAVVIRVDSPGGSVGASQEIHDEVKRLAQKKVVVCSMGNLAASGGLYVSVACPKIV 4972 D D++ +++ V+S GG E+ D++ +K ++ + + S ++ A K+V Sbjct: 113 DDDVEGIILDVNSYGGEAAGCFELADDIYAARDEKPIMAVIDSNCYSAAYAIASAATKVV 172 Query: 4971 ANPGTLTGSIGVISQFPNVKDLAEKLGVKVETVKTGKLKDAGNPFRDMTPEDRAYWQGLV 4792 + P GSIGV++ ++ ++ + +G+K+ + G K GNP+ + E +A Q V Sbjct: 173 STPSGGAGSIGVVAMHVDMSEMLDDMGIKITFIHAGDHKVDGNPYEAASKEVKASIQADV 232 Query: 4791 ENTLGQFVKAVAEGRKLDEAKVRAIADGRVLTGAQAKEAGLVDQLGNFYDAV 4636 + +FV VA R +D KVR + A GL+D + DAV Sbjct: 233 NASYDEFVSLVARNRGMDSQKVRD-TQAQTYRADDALNLGLIDAVAKPVDAV 283 >ref|YP_006585.1|putative head maturation protease Length = 306 Score = 79.3 bits (194), Expect = 1e-14 Identities = 50/184 (27%), Positives = 91/184 (49%) Frame = -1 Query: 5187 EDILKRIRRFADDGDLKAVVIRVDSPGGSVGASQEIHDEVKRLAQKKVVVCSMGNLAASG 5008 E I ++ +D + +V+ ++S GG+ +E+ D + + + K + + A S Sbjct: 95 ERIRSQLTAALNDPSISEIVLDINSGGGAAVGCKELADYIYQSRETKPITAIVNYNAFSA 154 Query: 5007 GLYVSVACPKIVANPGTLTGSIGVISQFPNVKDLAEKLGVKVETVKTGKLKDAGNPFRDM 4828 +++ AC KI+ + + GSIGVI + + L EK+G+ T+ G K+ G + Sbjct: 155 AYFIASACSKIIVSQTSGVGSIGVIMEHLDTSKLEEKMGLTFTTIFRGDNKNNGTQHEPL 214 Query: 4827 TPEDRAYWQGLVENTLGQFVKAVAEGRKLDEAKVRAIADGRVLTGAQAKEAGLVDQLGNF 4648 + E +A +QG+++ F +VAE R LD V G + G A AGL D++ + Sbjct: 215 SEEAQAMFQGMIDEMYETFTGSVAEYRGLDRQVVVDTQAG-LYFGPGAVSAGLADEISDP 273 Query: 4647 YDAV 4636 A+ Sbjct: 274 QSAI 277 >ref|NP_040584.1|capsid component Length = 439 Score = 76.6 bits (187), Expect = 7e-14 Identities = 53/198 (26%), Positives = 98/198 (49%), Gaps = 5/198 (2%) Frame = -1 Query: 5181 ILKRIRRFADDGDLKAVVIRVDSPGGSVGASQEIHDEVKRLAQKKVVVCSMGNLAASGGL 5002 I+ R+++ A D + +++ +D+PGG V + + D + R+ K V ++ S G Sbjct: 110 IIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSAGQ 169 Query: 5001 YVSVACPKIVANPGTLTGSIGVISQFPNVKDLAEKLGVKVETVKTGKLKDAGNPFRDMTP 4822 ++ A + + TGSIGV+ N EK GV++ + +G K GNP+ + Sbjct: 170 LLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHLPD 229 Query: 4821 EDRAYWQGLVENTLGQFVKAVAEGRKLDEAKVRAIADGRVLTGAQAKEAGLVDQLGNFYD 4642 + R Q ++ T F + V+ L +V + V +G +A +AGL D+L N D Sbjct: 230 DVRETLQSRMDATRQMFAQKVSAYTGL-SVQVVLDTEAAVYSGQEAIDAGLADELVNSTD 288 Query: 4641 AVELAK-----QEAKLSG 4603 A+ + + ++++LSG Sbjct: 289 AITVMRDALDARKSRLSG 306 >ref|NP_046900.1|gp5 Length = 447 Score = 68.2 bits (165), Expect = 2e-11 Identities = 44/187 (23%), Positives = 90/187 (48%) Frame = -1 Query: 5181 ILKRIRRFADDGDLKAVVIRVDSPGGSVGASQEIHDEVKRLAQKKVVVCSMGNLAASGGL 5002 I+ R+++ D + +++ +D+PGG V + + D + R+ K + ++ S G Sbjct: 112 IIARLQQAISDPGVDGILLDMDTPGGMVSGAFDCADIIARMRDIKPIWALANDMNCSAGQ 171 Query: 5001 YVSVACPKIVANPGTLTGSIGVISQFPNVKDLAEKLGVKVETVKTGKLKDAGNPFRDMTP 4822 ++ + + + TGSIGV+ N + GV+V + +G K GNP+ + Sbjct: 172 LIASSASRRLVTQTARTGSIGVMMAHSNYGAALKTNGVEVSLIYSGDHKVDGNPYEKLPE 231 Query: 4821 EDRAYWQGLVENTLGQFVKAVAEGRKLDEAKVRAIADGRVLTGAQAKEAGLVDQLGNFYD 4642 + RA +Q ++ T F + V+ + V + V +G ++ + GL D+L N D Sbjct: 232 DVRADFQTRIDATRQMFAEKVSAYTGMSVQDV-LDTEAAVFSGQESVDNGLADELVNNTD 290 Query: 4641 AVELAKQ 4621 A+ + ++ Sbjct: 291 ALGVMRE 297 >ref|NP_758917.1|ORF24 Length = 426 Score = 43.5 bits (101), Expect = 6e-04 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 1/132 (0%) Frame = -1 Query: 5055 QKKVVVCSMGNLAASGGLY-VSVACPKIVANPGTLTGSIGVISQFPNVKDLAEKLGVKVE 4879 ++ V S+ N + Y ++ C ++ GSIGVI + + K+G+ + Sbjct: 139 KRPVTRVSLENESCYSAAYALACCCDQVFLTSSAGAGSIGVICGRLDQTEYNRKMGLSIA 198 Query: 4878 TVKTGKLKDAGNPFRDMTPEDRAYWQGLVENTLGQFVKAVAEGRKLDEAKVRAIADGRVL 4699 V +G K +P + ++ ++R Q L+ +F VAE R + +V+A+ G Sbjct: 199 VV-SGDYKADFSPHKVLSDDERQRLQALIVQLGSEFHNLVAEARGMTAEQVKALKAG-CF 256 Query: 4698 TGAQAKEAGLVD 4663 TG A + GL D Sbjct: 257 TGRXAVDNGLAD 268 >ref|NP_813780.1|internal virion protein D Length = 1392 Score = 37.7 bits (86), Expect = 0.034 Identities = 19/44 (43%), Positives = 27/44 (61%) Frame = -3 Query: 1402 KKQTLDNPVFYVQYGHARLAAIFQKAREAGHAVPEFDLDAARTL 1271 K+ L+NP Q+G+A+ A+ ++R AGH VP DAAR L Sbjct: 710 KQDVLENPA---QFGNAQATAVLDQSRHAGHYVPNVYDDAARAL 750 >ref|NP_203471.1|virion structural protein Length = 583 Score = 34.3 bits (77), Expect = 0.37 Identities = 43/141 (30%), Positives = 56/141 (39%), Gaps = 10/141 (7%) Frame = +3 Query: 7434 SAGARRISGLDRAGVATALPPGLVLRAAPPGIERPSRAGRT---PAHMQITECARYTSEI 7604 S ARR G RAG A G L A E GRT + +++ E AR + Sbjct: 54 SPTARRQIGRTRAG-ALGFAQGGTLGFAD---EIGGLIGRTFVPESSVRLGEAARPLATD 109 Query: 7605 AASRRPRLAERPQPGRHPLDHPVRRRGPRRKADHPAAVEPGRLELGLGLD-------VPG 7763 R E +P + + R R +AD +PG G L PG Sbjct: 110 TPEERAAKVEARASQLNPSSYELVRDAVRNEADEAREQQPGAFITGQVLGGLATAPVTPG 169 Query: 7764 ARLDGAADLGEVARVGAVLPA 7826 A GAA LG++ R GAV+ A Sbjct: 170 A---GAASLGQLVRTGAVMGA 187 >ref|NP_817868.1|gp17 Length = 221 Score = 33.9 bits (76), Expect = 0.49 Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 18/127 (14%) Frame = -1 Query: 5847 DLQDRKVALSMKAVNRDGGEDDYREYLRRQGDGRARLGDLMEKFNRRK*PPGG------- 5689 D Q ++ L+ + +DD R L + R +GD + K ++ GG Sbjct: 52 DKQQVRIVLATDERDPSEPDDDGRRTLYVKSYMRGAIGDALRKAGAKEPEVGGTLTVTFT 111 Query: 5688 -----------PEHLRAACASGPPASFLPVATPRAACLPDPTMNPSDPNEPLPTTPVGPQ 5542 P AA + PP + A P A P P + P P +P P P Q Sbjct: 112 HVTPPDRPGMSPSKHFAATYTPPPVTGGYFAPPAGA--PAPAVTPGAPAQPAPVPP-AVQ 168 Query: 5541 EPQPGAT 5521 + PGAT Sbjct: 169 QAFPGAT 175 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,050,852 Number of Sequences: 14420 Number of extensions: 726887 Number of successful extensions: 3411 Number of sequences better than 0.5: 12 Number of HSP's better than 0.5 without gapping: 2411 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3403 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 6981532275 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig38 (16,591 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046584.1|putative transglycosylase 66 1e-10 ref|NP_040700.1|hypothetical protein 45 2e-04 ref|NP_803640.1|ORF074 44 7e-04 ref|NP_817633.1|gp44 34 0.42 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 66.2 bits (160), Expect = 1e-10 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 1/146 (0%) Frame = +3 Query: 3654 SHPEPYPELLPARARAFGVDPALVLAVMRRESSFRRAVRSGAGAEGLLQLRPVTAERXXX 3833 S+ Y + + A + VDPAL+ AV+++ES F RSG GA GL+QL P TA+ Sbjct: 1417 SYSGKYSSYINSAASKYNVDPALIAAVIQQESGFNAKARSGVGAMGLMQLMPATAK---- 1472 Query: 3834 XXXXXXXXXDRLDRPEVNVXXXXXXXXXXXXRF-ADPAVVLAAYNAGPGPASEWARSRAG 4010 + P NV +F + LAAYNAGPG ++ G Sbjct: 1473 -----SLGVNNAYDPYQNVMGGTKYLAQQLEKFGGNVEKALAAYNAGPGNVIKY----GG 1523 Query: 4011 MPLDAWVECIPYRETRQYVKVVLSDW 4088 +P P++ET+ YVK +++++ Sbjct: 1524 IP--------PFKETQNYVKKIMANY 1541 >ref|NP_040700.1|hypothetical protein Length = 265 Score = 45.4 bits (106), Expect = 2e-04 Identities = 31/111 (27%), Positives = 47/111 (42%) Frame = +3 Query: 3675 ELLPARARAFGVDPALVLAVMRRESSFRRAVRSGAGAEGLLQLRPVTAERXXXXXXXXXX 3854 E + A + + +DP LV V++ ESS SG GA GL+QL P TA+ Sbjct: 9 ETIGAASAQYNLDPRLVAGVVQTESSGNPRTTSGVGAMGLMQLMPATAKSLGVTNAYD-- 66 Query: 3855 XXDRLDRPEVNVXXXXXXXXXXXXRFADPAVVLAAYNAGPGPASEWARSRA 4007 P N+ R+ D L AY+ G A+ A++++ Sbjct: 67 -------PTQNIYGGAALLRENLDRYGDVNTALLAYHGGTNQANWGAKTKS 110 >ref|NP_803640.1|ORF074 Length = 677 Score = 43.5 bits (101), Expect = 7e-04 Identities = 56/232 (24%), Positives = 88/232 (37%), Gaps = 5/232 (2%) Frame = -1 Query: 13552 QQIRQLAGMRGLMAKPSGEIIETPITANFREGL-NVLQYFISTHGARKGLADTALKTANS 13376 +Q+ Q RG + +I + P+T + +G+ N+ + I + K L + Sbjct: 207 EQLLQAFAWRGFPTDINSDIFKYPVTTGYIDGIWNLYENMIESRSGTKALLYNKELLRVT 266 Query: 13375 GYLTRRLVDVAQDAI-ITEYDCGAMDGITLGALVEGGEIIEPMGERILGRVALDDI-LDA 13202 Y R+ +AQ + DC IL + + L A Sbjct: 267 EYFNRKSQLIAQYVQRLHPGDCKTT---------------------ILAEYPVTKLTLKA 305 Query: 13201 FSGNVLVKANEEIDEGRVKLIENSGIDKVKIRSVLTCQA--RRGICVECYGRDLARGRKV 13028 F G K + ++D R G K K RSV C +GIC+ CYGR G + Sbjct: 306 FKGKYYQKEDGKLDWIRGNETHLIGT-KQKFRSVFGCNHPDSQGICMTCYGR---LGINI 361 Query: 13027 NIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRRAEQSTIENRNAGLIKFN 12872 G +G +AA S+G+ T + T H + S +E G I+ N Sbjct: 362 PKGTNIGQVAAVSMGDKITSAVLSTKHTDAS-------SAVEQYKLGKIESN 406 >ref|NP_817633.1|gp44 Length = 604 Score = 34.3 bits (77), Expect = 0.42 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 11/92 (11%) Frame = -1 Query: 4957 LALDTESNSFHVYRE--RVCLLQLSTRTQDFVVDPISVDVR---PLGEILCDGREVVLHG 4793 L LDTE+ +Y + R L+Q T + +V+ P+ + R + L + + VLH Sbjct: 38 LGLDTETTGLDIYSDDFRCRLVQFGTPNEAWVI-PVELGPRYEEEARQALRNVKGFVLHN 96 Query: 4792 ADYDVRCLHREYG------WRIPRLFDTMIAA 4715 A YD++ + R G W P++ DT I A Sbjct: 97 ASYDLQVIERTLGIPMEDMW--PKVTDTKILA 126 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,371,853 Number of Sequences: 14420 Number of extensions: 735404 Number of successful extensions: 3337 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 2420 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3331 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 7846431020 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig39 (18,451 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,986,668 Number of Sequences: 14420 Number of extensions: 852400 Number of successful extensions: 3706 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 2467 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3698 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 8655463179 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig40 (16,924 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046569.1|IMPB 69 1e-11 ref|NP_116522.1|unknown 43 0.001 ref|YP_164321.1|hypothetical protein 34 0.43 >ref|NP_046569.1|IMPB Length = 416 Score = 69.3 bits (168), Expect = 1e-11 Identities = 93/403 (23%), Positives = 164/403 (40%), Gaps = 17/403 (4%) Frame = +2 Query: 9407 RTILHLDLDAFYASVEQLDHP--ELRGRPVIVGGTGNRG-VVCAASYEARR-FGVRSALP 9574 + IL +D+ +FYASV + L +VG T +G VV AAS ++ FG+++ Sbjct: 10 KNILCVDMKSFYASVSAVTMGLNPLTCYLAVVGNTERQGSVVLAASPALKKDFGIKTG-- 67 Query: 9575 TARARRLCPDGVF--LPPRFGRYSELSRRVFDVYRRYTP--LVEPLSLDEAFLDVTASRA 9742 +R + D + P+ + +S + ++ R+ P V S+DE+FLD Sbjct: 68 -SRLFEIPEDPRIHIVNPQMKLFIRVSTEITKLFYRFVPEKCVHTYSIDESFLDAGKEDP 126 Query: 9743 LHGGGPDIARAIKAAVRGECGLAVSAGVADVKMAAKIATDXXXXXXXXXXXXXXXXXXXX 9922 ++A+AI++++ E GL + G+ D + +K+A D Sbjct: 127 -----EEMAKAIQSSMWREFGLMCTVGIGDNMLLSKLALDLESKKTKSGIARWRYEDVPN 181 Query: 9923 XXX----VGRLWGVGEVTEAALRRIGVATIGDLARMPESALAAALGPTHARGLRALACGE 10090 + ++WG+G E L R+G++TIG LA+ P L G L A G Sbjct: 182 KLWKVRPLSKMWGIGGRMERNLNRMGISTIGQLAKFPLELLEKKFG-IMGNQLYYHAHGI 240 Query: 10091 DPREV-VPDEEAK-SVGAEDTFDQDLLGRPALERELLAQAGTVXXXXXXXXXXXHVVTLK 10264 D E+ P + + S G +D ++ LL V ++L Sbjct: 241 DLSEIGAPLMQGQISFGKSQILLRDYTRSEEIKAVLLEICEEVARRARTHNKVGRTISLG 300 Query: 10265 VKYADFTL---VTRRVTLERATDDDRAIFDAACAQLARVDLRRPVRLTGISVSGFAGDEE 10435 + Y+ L R T++ T I+ + + VR +++S D+ Sbjct: 301 IGYSKDELGGGFHRSKTIDLPTSITMDIYRCCLMLFNKFYSGKTVRSVSVTLSNIE-DDV 359 Query: 10436 RGQLGLFXXXXXXXXXEASRRKALNAALDALAGRFGEGAVTRA 10564 QL LF + +R+ L +D + ++G A+ RA Sbjct: 360 NQQLSLF-------EVDNEKRRKLGFVMDGIRSKYGSKAILRA 395 >ref|NP_116522.1|unknown Length = 536 Score = 43.1 bits (100), Expect = 0.001 Identities = 31/131 (23%), Positives = 58/131 (44%) Frame = -1 Query: 7090 GIDPAGLPLHRLLVRLAGFVPALYTTNFDDLLERTFAWAGRACQVVAAPDDLQRWRLDPA 6911 G D + ++LV+ V TTN+D+ +E F+ + +V L D Sbjct: 130 GFDEEIISFSKMLVKARFIV----TTNYDNFIEECFSKRNVSIKVNVGNSGLFVKSNDYG 185 Query: 6910 GGRFVSRFPVYKLHGTLDRPATLVVSETDFQRRASLAAHAIDLRFCSDAVGRELLLVGYG 6731 +YK+HG++ P T+ ++ D++ S A ++ + S+ +L +GY Sbjct: 186 --------ELYKIHGSVKNPNTICITSEDYKNNESKLA-LVNAKILSNLTESPILFIGYS 236 Query: 6730 FNDPNLRWIWT 6698 D N+R + T Sbjct: 237 LTDKNIRELLT 247 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 34.3 bits (77), Expect = 0.43 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = +1 Query: 8698 GEPVRQHVQHVGAPGLGGELLPDHRQHRLPRGRHQRGEAAHRHD--GQHRI 8844 G+P R VQHVG PG G L R + RGR + + RH+ QHR+ Sbjct: 509 GQPERGAVQHVGVPGPGRSLA---RSGQRQRGRRRNAISLCRHEQPDQHRL 556 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,566,341 Number of Sequences: 14420 Number of extensions: 867207 Number of successful extensions: 3666 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 2522 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3647 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 8007123611 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig41 (17,975 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_612994.1|hypothetical protein 63 1e-09 ref|NP_049482.1|serine 63 1e-09 ref|NP_612899.1|hypothetical protein 42 0.002 ref|NP_899371.1|GTP cyclohydrolase I family protein 42 0.002 ref|NP_817595.1|gp4 42 0.002 ref|NP_859265.1|hypothetical protein 41 0.004 ref|NP_859099.1|hypothetical protein 41 0.004 ref|NP_050557.1|hypothetical protein 41 0.004 ref|NP_049519.1|putative tail fiber protein 41 0.004 ref|NP_958267.1|hypothetical protein 38 0.041 ref|NP_852574.1|Collagen triple helix repeat protein 36 0.16 ref|YP_003760.1|hypothetical protein 35 0.21 >ref|NP_612994.1|hypothetical protein Length = 348 Score = 62.8 bits (151), Expect = 1e-09 Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 1/199 (0%) Frame = -2 Query: 1117 GGMGAVFQARHVHLRKDLAVKVLRPELSASPDLVERFRREAEIASALQHDHIVHVTDFGR 938 G V+ A HL DL +K + + + + D + EA + H +IV V + Sbjct: 22 GCFSKVYLAHDRHLAHDLVIKEIEKKENTNHD---DYFNEARLLYKHAHPNIVQVQYAAQ 78 Query: 937 TEEGWLFLAMELLTGESLFDRLRREGXXXXXXXXXXLWQICAGLGAAHAMGVVHRDLKPE 758 E +++AM SL ++L ++ Q +GL H+ G++H D+KP Sbjct: 79 CESN-IYIAMPFYHNGSL-NQLMKKNNLTSREIIRYSIQFLSGLYHIHSKGLMHFDIKPN 136 Query: 757 NVFLARTASGREVAKILDFGIAKMTDPSSGCATQAGMVVGT-PEYLAPEQATGGAVDARA 581 N+ + S R A + DFG++++ + S A + G PEY + + + Sbjct: 137 NIMI----SNRNEAMLSDFGLSQLVNEESRAAPEFGYHFHVPPEYFS---LSTNDYNFTY 189 Query: 580 DLYAVGLIAWRMLAGHHPF 524 D+Y GL +RM GH F Sbjct: 190 DIYQAGLTIYRMCVGHDNF 208 >ref|NP_049482.1|serine Length = 348 Score = 62.8 bits (151), Expect = 1e-09 Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 1/199 (0%) Frame = -2 Query: 1117 GGMGAVFQARHVHLRKDLAVKVLRPELSASPDLVERFRREAEIASALQHDHIVHVTDFGR 938 G V+ A HL DL +K + + + + D + EA + H +IV V + Sbjct: 22 GCFSKVYLAHDRHLAHDLVIKEIEKKENTNHD---DYFNEARLLYKHAHPNIVQVQYAAQ 78 Query: 937 TEEGWLFLAMELLTGESLFDRLRREGXXXXXXXXXXLWQICAGLGAAHAMGVVHRDLKPE 758 E +++AM SL ++L ++ Q +GL H+ G++H D+KP Sbjct: 79 CESN-IYIAMPFYHNGSL-NQLMKKNNLTSREIIRYSIQFLSGLYHIHSKGLMHFDIKPN 136 Query: 757 NVFLARTASGREVAKILDFGIAKMTDPSSGCATQAGMVVGT-PEYLAPEQATGGAVDARA 581 N+ + S R A + DFG++++ + S A + G PEY + + + Sbjct: 137 NIMI----SNRNEAMLSDFGLSQLVNEESRAAPEFGYHFHVPPEYFS---LSTNDYNFTY 189 Query: 580 DLYAVGLIAWRMLAGHHPF 524 D+Y GL +RM GH F Sbjct: 190 DIYQAGLTIYRMCVGHDNF 208 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 42.4 bits (98), Expect = 0.002 Identities = 41/120 (34%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Frame = -3 Query: 9369 ERGP-GPSTPAHPERRPG-PSTPAHPERRPGPSTPGRSAALRSG*AKPPRPGRSRGTLGV 9196 ERGP G P+ G P PA P+ G G A P P +RG G Sbjct: 317 ERGPKGDQGDMGPKGEKGDPGGPAGPQGPKG----------ERGEAGPQGPMGARGERGD 366 Query: 9195 SGNDRARPESRDARGERKR*GPAGVEGRSG*AETIGPGRSRGTLGVSGNDRGPAGVEGRR 9016 +G R P RGER GP G G G GP G G G +RG G +G R Sbjct: 367 TG-PRGEPGPAGPRGERGETGPQGPMGARGERGETGPRGEPGPAGPRG-ERGETGPQGPR 424 Score = 41.2 bits (95), Expect = 0.004 Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 4/112 (3%) Frame = -3 Query: 9345 PAHPERRPGPSTPAHPERRPGPSTPGRSAALRSG*AKPPRPGRSRGTLGVSGN-DRARPE 9169 P P+ GP P+ GP P P P RG +G G A P Sbjct: 245 PRGPQGETGPKGDVGPKGETGPVGP----------QGPAGPKGERGDVGAQGAVGPAGP- 293 Query: 9168 SRDARGERKR*GPAGVEGRSG*AETIGPGRSRGTL---GVSGNDRGPAGVEG 9022 R +GE+ GP G+ G G GP +G + G G+ GPAG +G Sbjct: 294 -RGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQG 344 Score = 40.8 bits (94), Expect = 0.005 Identities = 25/62 (40%), Positives = 27/62 (43%) Frame = -1 Query: 9245 GERNHQGPAGVEGRSG*AETIGPGRSRGTLGVSGNDRARPESRDARGERKR*GPAGVEGR 9066 G R GPAG G G GP +RG G +G R P RGER GP G G Sbjct: 368 GPRGEPGPAGPRGERGETGPQGPMGARGERGETG-PRGEPGPAGPRGERGETGPQGPRGE 426 Query: 9065 SG 9060 G Sbjct: 427 PG 428 Score = 37.0 bits (84), Expect = 0.071 Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 1/104 (0%) Frame = -3 Query: 9357 GPSTPAHPERRPGPSTPAHPERRPGPSTPGRSAALRSG*AKPPRPGRSRGTLGVSG-NDR 9181 GP+ PA P+ G P G P A G A P P RG G +G Sbjct: 501 GPAGPAGPKGDKGERGDTGPVGATGERGPAGDA----GPAGPQGPKGDRGERGETGLTGN 556 Query: 9180 ARPESRDARGERKR*GPAGVEGRSG*AETIGPGRSRGTLGVSGN 9049 A P+ +G+ GPAG +G G GP + G G G+ Sbjct: 557 AGPQG--PKGDTGAAGPAGPQGPKGETGAAGPVGATGPQGPKGD 598 Score = 36.2 bits (82), Expect = 0.12 Identities = 32/92 (34%), Positives = 37/92 (40%), Gaps = 4/92 (4%) Frame = -2 Query: 9358 GPLDSRSSRA*AGPLDSRSSRA*AGPLDSGPLRGPTLGVSETTKARPESRDARGERKR*G 9179 GP R GP+ +R R GP GP ET P ARGER G Sbjct: 344 GPKGERGEAGPQGPMGARGERGDTGPRGEPGPAGPRGERGETGPQGPMG--ARGERGETG 401 Query: 9178 PAGVEGRSG----*AETIGPGRSRGTLGVSGN 9095 P G G +G ET GP RG G +G+ Sbjct: 402 PRGEPGPAGPRGERGET-GPQGPRGEPGPAGS 432 Score = 35.0 bits (79), Expect = 0.27 Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 9/80 (11%) Frame = -1 Query: 9245 GERNHQGPAGVEGRSG*AETIGPG---------RSRGTLGVSGNDRARPESRDARGERKR 9093 GER GP G G G A GP RG G++GN A P+ +G+ Sbjct: 513 GERGDTGPVGATGERGPAGDAGPAGPQGPKGDRGERGETGLTGN--AGPQG--PKGDTGA 568 Query: 9092 *GPAGVEGRSG*AETIEARP 9033 GPAG +G G ET A P Sbjct: 569 AGPAGPQGPKG--ETGAAGP 586 Score = 34.7 bits (78), Expect = 0.35 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = -1 Query: 9245 GERNHQGPAGVEGRSG*AETIGPGRSRGTLGVSG--NDRARPES-RDARGERKR*GPAGV 9075 GE+ +GP G+ G G GP +G +G G D P + +GER GP G Sbjct: 298 GEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQGPKGERGEAGPQGP 357 Query: 9074 EGRSG 9060 G G Sbjct: 358 MGARG 362 Score = 34.7 bits (78), Expect = 0.35 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 8/97 (8%) Frame = -2 Query: 9361 AGPLDSRSSRA*AGPLDSRSSRA*AGPLDSGPL--------RGPTLGVSETTKARPESRD 9206 AGP + R GP+ + R AG D+GP RG T A P+ Sbjct: 506 AGPKGDKGERGDTGPVGATGERGPAG--DAGPAGPQGPKGDRGERGETGLTGNAGPQG-- 561 Query: 9205 ARGERKR*GPAGVEGRSG*AETIGPGRSRGTLGVSGN 9095 +G+ GPAG +G G GP + G G G+ Sbjct: 562 PKGDTGAAGPAGPQGPKGETGAAGPVGATGPQGPKGD 598 >ref|NP_899371.1|GTP cyclohydrolase I family protein Length = 302 Score = 42.4 bits (98), Expect = 0.002 Identities = 26/79 (32%), Positives = 36/79 (45%) Frame = -3 Query: 2997 PEFTCVCPMTGQPDFATIRLRYVPAERCVELKSLKLYLWSFRDEGTFHEAVTNRICDDLV 2818 P C +T QPDF + + Y+ E+ + SL Y+ SFR E FHE I L+ Sbjct: 191 PNLRSNCRVTHQPDFGDLYV-YMSGEKTPTVDSLMQYIVSFRKENHFHEECVEMIYKALL 249 Query: 2817 AALAPRWIEVVGDFAVRGG 2761 P + V + RGG Sbjct: 250 DKFDPTELMVTALYTRRGG 268 >ref|NP_817595.1|gp4 Length = 344 Score = 42.0 bits (97), Expect = 0.002 Identities = 34/117 (29%), Positives = 48/117 (41%) Frame = -3 Query: 9372 PERGPGPSTPAHPERRPGPSTPAHPERRPGPSTPGRSAALRSG*AKPPRPGRSRGTLGVS 9193 PE GP+ P P+ G P P+ GP+ P +G P P +G G+ Sbjct: 151 PEGEQGPTGPQGPKGDTGSQGPQGPKGDTGPTGP-------AGPTGPQGPKGDKGDQGIQ 203 Query: 9192 GNDRARPESRDARGERKR*GPAGVEGRSG*AETIGPGRSRGTLGVSGNDRGPAGVEG 9022 G D +G++ GP G G +G G +G G +G D GP G +G Sbjct: 204 GPQGPSGPKGD-KGDKGDTGPIGPTGDTGPEGPQGETGPQGPKGDTG-DTGPQGPKG 258 Score = 38.1 bits (87), Expect = 0.032 Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 5/122 (4%) Frame = -3 Query: 9372 PERGPGPSTPAHPERRPGPSTPAHPERRPGPSTPGRSAALRSG*AKPPRPGRSRGTLGVS 9193 P+ GP P P+ G + A PE GP+ P + +G P P G G + Sbjct: 127 PQGPTGPQGPQGPQGPRGFTGEAGPEGEQGPTGP-QGPKGDTGSQGPQGPKGDTGPTGPA 185 Query: 9192 G-----NDRARPESRDARGERKR*GPAGVEGRSG*AETIGPGRSRGTLGVSGNDRGPAGV 9028 G + + +G + GP G +G G IGP G G G + GP G Sbjct: 186 GPTGPQGPKGDKGDQGIQGPQGPSGPKGDKGDKGDTGPIGPTGDTGPEGPQG-ETGPQGP 244 Query: 9027 EG 9022 +G Sbjct: 245 KG 246 Score = 35.0 bits (79), Expect = 0.27 Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 1/116 (0%) Frame = -3 Query: 9366 RGP-GPSTPAHPERRPGPSTPAHPERRPGPSTPGRSAALRSG*AKPPRPGRSRGTLGVSG 9190 +GP GPS P + G + P P GP P G P P G G G Sbjct: 203 QGPQGPSGPKGDKGDKGDTGPIGPTGDTGPEGP-------QGETGPQGPKGDTGDTGPQG 255 Query: 9189 NDRARPESRDARGERKR*GPAGVEGRSG*AETIGPGRSRGTLGVSGNDRGPAGVEG 9022 + G GP G +G G GP +G G +G +GP G++G Sbjct: 256 -------PKGDTGATGAQGPKGDKGDKGDTGDTGPKGDKGDKGDTG-AQGPQGIQG 303 >ref|NP_859265.1|hypothetical protein Length = 645 Score = 41.2 bits (95), Expect = 0.004 Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 4/112 (3%) Frame = -3 Query: 9345 PAHPERRPGPSTPAHPERRPGPSTPGRSAALRSG*AKPPRPGRSRGTLGVSGN-DRARPE 9169 P P+ GP P+ GP P P P RG +G G A P Sbjct: 245 PRGPQGETGPKGDVGPKGETGPVGP----------QGPAGPKGERGDVGAQGAVGPAGP- 293 Query: 9168 SRDARGERKR*GPAGVEGRSG*AETIGPGRSRGTL---GVSGNDRGPAGVEG 9022 R +GE+ GP G+ G G GP +G + G G+ GPAG +G Sbjct: 294 -RGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQG 344 Score = 37.0 bits (84), Expect = 0.071 Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 1/104 (0%) Frame = -3 Query: 9357 GPSTPAHPERRPGPSTPAHPERRPGPSTPGRSAALRSG*AKPPRPGRSRGTLGVSG-NDR 9181 GP+ PA P+ G P G P A G A P P RG G +G Sbjct: 468 GPAGPAGPKGDKGERGDTGPVGATGERGPAGDA----GPAGPQGPKGDRGERGETGLTGN 523 Query: 9180 ARPESRDARGERKR*GPAGVEGRSG*AETIGPGRSRGTLGVSGN 9049 A P+ +G+ GPAG +G G GP + G G G+ Sbjct: 524 AGPQG--PKGDTGAAGPAGPQGPKGETGAAGPVGATGPQGPKGD 565 Score = 35.0 bits (79), Expect = 0.27 Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 9/80 (11%) Frame = -1 Query: 9245 GERNHQGPAGVEGRSG*AETIGPG---------RSRGTLGVSGNDRARPESRDARGERKR 9093 GER GP G G G A GP RG G++GN A P+ +G+ Sbjct: 480 GERGDTGPVGATGERGPAGDAGPAGPQGPKGDRGERGETGLTGN--AGPQG--PKGDTGA 535 Query: 9092 *GPAGVEGRSG*AETIEARP 9033 GPAG +G G ET A P Sbjct: 536 AGPAGPQGPKG--ETGAAGP 553 Score = 34.7 bits (78), Expect = 0.35 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = -1 Query: 9245 GERNHQGPAGVEGRSG*AETIGPGRSRGTLGVSG--NDRARPES-RDARGERKR*GPAGV 9075 GE+ +GP G+ G G GP +G +G G D P + +GER GP G Sbjct: 298 GEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQGPKGERGEAGPQGP 357 Query: 9074 EGRSG 9060 G G Sbjct: 358 MGARG 362 Score = 34.7 bits (78), Expect = 0.35 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 8/97 (8%) Frame = -2 Query: 9361 AGPLDSRSSRA*AGPLDSRSSRA*AGPLDSGPL--------RGPTLGVSETTKARPESRD 9206 AGP + R GP+ + R AG D+GP RG T A P+ Sbjct: 473 AGPKGDKGERGDTGPVGATGERGPAG--DAGPAGPQGPKGDRGERGETGLTGNAGPQG-- 528 Query: 9205 ARGERKR*GPAGVEGRSG*AETIGPGRSRGTLGVSGN 9095 +G+ GPAG +G G GP + G G G+ Sbjct: 529 PKGDTGAAGPAGPQGPKGETGAAGPVGATGPQGPKGD 565 >ref|NP_859099.1|hypothetical protein Length = 645 Score = 41.2 bits (95), Expect = 0.004 Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 4/112 (3%) Frame = -3 Query: 9345 PAHPERRPGPSTPAHPERRPGPSTPGRSAALRSG*AKPPRPGRSRGTLGVSGN-DRARPE 9169 P P+ GP P+ GP P P P RG +G G A P Sbjct: 245 PRGPQGETGPKGDVGPKGETGPVGP----------QGPAGPKGERGDVGAQGAVGPAGP- 293 Query: 9168 SRDARGERKR*GPAGVEGRSG*AETIGPGRSRGTL---GVSGNDRGPAGVEG 9022 R +GE+ GP G+ G G GP +G + G G+ GPAG +G Sbjct: 294 -RGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQG 344 Score = 37.0 bits (84), Expect = 0.071 Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 1/104 (0%) Frame = -3 Query: 9357 GPSTPAHPERRPGPSTPAHPERRPGPSTPGRSAALRSG*AKPPRPGRSRGTLGVSG-NDR 9181 GP+ PA P+ G P G P A G A P P RG G +G Sbjct: 468 GPAGPAGPKGDKGERGDTGPVGATGERGPAGDA----GPAGPQGPKGDRGERGETGLTGN 523 Query: 9180 ARPESRDARGERKR*GPAGVEGRSG*AETIGPGRSRGTLGVSGN 9049 A P+ +G+ GPAG +G G GP + G G G+ Sbjct: 524 AGPQG--PKGDTGAAGPAGPQGPKGETGAAGPVGATGPQGPKGD 565 Score = 35.0 bits (79), Expect = 0.27 Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 9/80 (11%) Frame = -1 Query: 9245 GERNHQGPAGVEGRSG*AETIGPG---------RSRGTLGVSGNDRARPESRDARGERKR 9093 GER GP G G G A GP RG G++GN A P+ +G+ Sbjct: 480 GERGDTGPVGATGERGPAGDAGPAGPQGPKGDRGERGETGLTGN--AGPQG--PKGDTGA 535 Query: 9092 *GPAGVEGRSG*AETIEARP 9033 GPAG +G G ET A P Sbjct: 536 AGPAGPQGPKG--ETGAAGP 553 Score = 34.7 bits (78), Expect = 0.35 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = -1 Query: 9245 GERNHQGPAGVEGRSG*AETIGPGRSRGTLGVSG--NDRARPES-RDARGERKR*GPAGV 9075 GE+ +GP G+ G G GP +G +G G D P + +GER GP G Sbjct: 298 GEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQGPKGERGEAGPQGP 357 Query: 9074 EGRSG 9060 G G Sbjct: 358 MGARG 362 Score = 34.7 bits (78), Expect = 0.35 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 8/97 (8%) Frame = -2 Query: 9361 AGPLDSRSSRA*AGPLDSRSSRA*AGPLDSGPL--------RGPTLGVSETTKARPESRD 9206 AGP + R GP+ + R AG D+GP RG T A P+ Sbjct: 473 AGPKGDKGERGDTGPVGATGERGPAG--DAGPAGPQGPKGDRGERGETGLTGNAGPQG-- 528 Query: 9205 ARGERKR*GPAGVEGRSG*AETIGPGRSRGTLGVSGN 9095 +G+ GPAG +G G GP + G G G+ Sbjct: 529 PKGDTGAAGPAGPQGPKGETGAAGPVGATGPQGPKGD 565 >ref|NP_050557.1|hypothetical protein Length = 645 Score = 41.2 bits (95), Expect = 0.004 Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 4/112 (3%) Frame = -3 Query: 9345 PAHPERRPGPSTPAHPERRPGPSTPGRSAALRSG*AKPPRPGRSRGTLGVSGN-DRARPE 9169 P P+ GP P+ GP P P P RG +G G A P Sbjct: 245 PRGPQGETGPKGDVGPKGETGPVGP----------QGPAGPKGERGDVGAQGAVGPAGP- 293 Query: 9168 SRDARGERKR*GPAGVEGRSG*AETIGPGRSRGTL---GVSGNDRGPAGVEG 9022 R +GE+ GP G+ G G GP +G + G G+ GPAG +G Sbjct: 294 -RGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQG 344 Score = 37.0 bits (84), Expect = 0.071 Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 1/104 (0%) Frame = -3 Query: 9357 GPSTPAHPERRPGPSTPAHPERRPGPSTPGRSAALRSG*AKPPRPGRSRGTLGVSG-NDR 9181 GP+ PA P+ G P G P A G A P P RG G +G Sbjct: 468 GPAGPAGPKGDKGERGDTGPVGATGERGPAGDA----GPAGPQGPKGDRGERGETGLTGN 523 Query: 9180 ARPESRDARGERKR*GPAGVEGRSG*AETIGPGRSRGTLGVSGN 9049 A P+ +G+ GPAG +G G GP + G G G+ Sbjct: 524 AGPQG--PKGDTGAAGPAGPQGPKGETGAAGPVGATGPQGPKGD 565 Score = 35.0 bits (79), Expect = 0.27 Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 9/80 (11%) Frame = -1 Query: 9245 GERNHQGPAGVEGRSG*AETIGPG---------RSRGTLGVSGNDRARPESRDARGERKR 9093 GER GP G G G A GP RG G++GN A P+ +G+ Sbjct: 480 GERGDTGPVGATGERGPAGDAGPAGPQGPKGDRGERGETGLTGN--AGPQG--PKGDTGA 535 Query: 9092 *GPAGVEGRSG*AETIEARP 9033 GPAG +G G ET A P Sbjct: 536 AGPAGPQGPKG--ETGAAGP 553 Score = 34.7 bits (78), Expect = 0.35 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = -1 Query: 9245 GERNHQGPAGVEGRSG*AETIGPGRSRGTLGVSG--NDRARPES-RDARGERKR*GPAGV 9075 GE+ +GP G+ G G GP +G +G G D P + +GER GP G Sbjct: 298 GEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQGPKGERGEAGPQGP 357 Query: 9074 EGRSG 9060 G G Sbjct: 358 MGARG 362 Score = 34.7 bits (78), Expect = 0.35 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 8/97 (8%) Frame = -2 Query: 9361 AGPLDSRSSRA*AGPLDSRSSRA*AGPLDSGPL--------RGPTLGVSETTKARPESRD 9206 AGP + R GP+ + R AG D+GP RG T A P+ Sbjct: 473 AGPKGDKGERGDTGPVGATGERGPAG--DAGPAGPQGPKGDRGERGETGLTGNAGPQG-- 528 Query: 9205 ARGERKR*GPAGVEGRSG*AETIGPGRSRGTLGVSGN 9095 +G+ GPAG +G G GP + G G G+ Sbjct: 529 PKGDTGAAGPAGPQGPKGETGAAGPVGATGPQGPKGD 565 >ref|NP_049519.1|putative tail fiber protein Length = 645 Score = 41.2 bits (95), Expect = 0.004 Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 4/112 (3%) Frame = -3 Query: 9345 PAHPERRPGPSTPAHPERRPGPSTPGRSAALRSG*AKPPRPGRSRGTLGVSGN-DRARPE 9169 P P+ GP P+ GP P P P RG +G G A P Sbjct: 245 PRGPQGETGPKGDVGPKGETGPVGP----------QGPAGPKGERGDVGAQGAVGPAGP- 293 Query: 9168 SRDARGERKR*GPAGVEGRSG*AETIGPGRSRGTL---GVSGNDRGPAGVEG 9022 R +GE+ GP G+ G G GP +G + G G+ GPAG +G Sbjct: 294 -RGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQG 344 Score = 37.0 bits (84), Expect = 0.071 Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 1/104 (0%) Frame = -3 Query: 9357 GPSTPAHPERRPGPSTPAHPERRPGPSTPGRSAALRSG*AKPPRPGRSRGTLGVSG-NDR 9181 GP+ PA P+ G P G P A G A P P RG G +G Sbjct: 468 GPAGPAGPKGDKGERGDTGPVGATGERGPAGDA----GPAGPQGPKGDRGERGETGLTGN 523 Query: 9180 ARPESRDARGERKR*GPAGVEGRSG*AETIGPGRSRGTLGVSGN 9049 A P+ +G+ GPAG +G G GP + G G G+ Sbjct: 524 AGPQG--PKGDTGAAGPAGPQGPKGETGAAGPVGATGPQGPKGD 565 Score = 35.0 bits (79), Expect = 0.27 Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 9/80 (11%) Frame = -1 Query: 9245 GERNHQGPAGVEGRSG*AETIGPG---------RSRGTLGVSGNDRARPESRDARGERKR 9093 GER GP G G G A GP RG G++GN A P+ +G+ Sbjct: 480 GERGDTGPVGATGERGPAGDAGPAGPQGPKGDRGERGETGLTGN--AGPQG--PKGDTGA 535 Query: 9092 *GPAGVEGRSG*AETIEARP 9033 GPAG +G G ET A P Sbjct: 536 AGPAGPQGPKG--ETGAAGP 553 Score = 34.7 bits (78), Expect = 0.35 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = -1 Query: 9245 GERNHQGPAGVEGRSG*AETIGPGRSRGTLGVSG--NDRARPES-RDARGERKR*GPAGV 9075 GE+ +GP G+ G G GP +G +G G D P + +GER GP G Sbjct: 298 GEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQGPKGERGEAGPQGP 357 Query: 9074 EGRSG 9060 G G Sbjct: 358 MGARG 362 Score = 34.7 bits (78), Expect = 0.35 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 8/97 (8%) Frame = -2 Query: 9361 AGPLDSRSSRA*AGPLDSRSSRA*AGPLDSGPL--------RGPTLGVSETTKARPESRD 9206 AGP + R GP+ + R AG D+GP RG T A P+ Sbjct: 473 AGPKGDKGERGDTGPVGATGERGPAG--DAGPAGPQGPKGDRGERGETGLTGNAGPQG-- 528 Query: 9205 ARGERKR*GPAGVEGRSG*AETIGPGRSRGTLGVSGN 9095 +G+ GPAG +G G GP + G G G+ Sbjct: 529 PKGDTGAAGPAGPQGPKGETGAAGPVGATGPQGPKGD 565 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 37.7 bits (86), Expect = 0.041 Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 3/76 (3%) Frame = -2 Query: 3148 PAREIPTACCRFFTGSHQARRT---PHADPALPRPPDVPEPEARTPVRDRDGVPGVHLRV 2978 P P R +H+ RT PH PA R PD PEP+ P R R Sbjct: 14 PHTRTPAPRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEPD--HPCR----------RA 61 Query: 2977 PDDRAAGLRHHPPPVR 2930 P AAG R HPP R Sbjct: 62 PSRPAAGPRRHPPVAR 77 >ref|NP_852574.1|Collagen triple helix repeat protein Length = 536 Score = 35.8 bits (81), Expect = 0.16 Identities = 32/117 (27%), Positives = 39/117 (33%), Gaps = 3/117 (2%) Frame = -3 Query: 9363 GP-GPSTPAHPERRPGPSTPAHPERRPGPSTPGRSAALRSG*AKPPRPGRSRGTLGVSGN 9187 GP GP+ P P G + P P GP+ P G P G Sbjct: 75 GPTGPTGPTGPTGSTGLTGPTGPNSDTGPTGPTGPTGPSDGPTGPTGATGPTGPPDGPTG 134 Query: 9186 DRARPESRDARGERKR*GPAGVEGRSG*AETIGPGRSRGTLGVSG--NDRGPAGVEG 9022 D S G+ G G G +G + GP G G +G D GP G G Sbjct: 135 DTGPTGSTGPTGDTGPTGSTGPTGDTGPTGSTGPTGDTGPTGSTGPTGDTGPTGSTG 191 Score = 34.3 bits (77), Expect = 0.46 Identities = 30/112 (26%), Positives = 37/112 (33%) Frame = -3 Query: 9357 GPSTPAHPERRPGPSTPAHPERRPGPSTPGRSAALRSG*AKPPRPGRSRGTLGVSGNDRA 9178 GP+ P G + P P GP+ P S L +G P P G G +G Sbjct: 30 GPTGSTGPTGPTGSTGPTGPTGSTGPTGPTGSTGL-TGLTGPTGPTGPTGPTGPTGPT-- 86 Query: 9177 RPESRDARGERKR*GPAGVEGRSG*AETIGPGRSRGTLGVSGNDRGPAGVEG 9022 G G+ G +G GP G G S GP G G Sbjct: 87 --------------GSTGLTGPTGPNSDTGPTGPTGPTGPSDGPTGPTGATG 124 >ref|YP_003760.1|hypothetical protein Length = 300 Score = 35.4 bits (80), Expect = 0.21 Identities = 19/54 (35%), Positives = 32/54 (59%) Frame = -3 Query: 12183 GVTDHGLLGKEALARLYATAAVFALPTLREAFGLSFLEAMAFELPVVASRIEAI 12022 GV + G LGK + +LY+ A FA+ EAFG+ +EA A ++P++ + + Sbjct: 179 GVHNMGRLGKSEIQKLYSIAD-FAIELGIEAFGMPSIEAWAMQVPMLYGNVNDV 231 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,124,743 Number of Sequences: 14420 Number of extensions: 813587 Number of successful extensions: 4201 Number of sequences better than 0.5: 12 Number of HSP's better than 0.5 without gapping: 2337 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3719 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 8515259642 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig42 (25,708 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_006944.1|NAD-dependent DNA ligase, subunit A 101 4e-21 ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family 69 2e-11 ref|YP_024677.1|gp04 61 5e-09 ref|YP_006945.1|NAD-dependent DNA ligase, subunit B 49 3e-05 ref|NP_775240.1|hypothetical protein 45 4e-04 ref|NP_932452.1|hypothetical protein 37 0.075 ref|NP_958259.1|hypothetical protein 36 0.17 ref|NP_943922.1|hypothetical protein 35 0.37 ref|NP_958267.1|hypothetical protein 35 0.49 >ref|YP_006944.1|NAD-dependent DNA ligase, subunit A Length = 323 Score = 101 bits (251), Expect = 4e-21 Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 8/344 (2%) Frame = +1 Query: 8191 QRVSGAPSERFERVVHREPMLS----LGNVQSDDELHEFDARVRRLLGLPEGEAVGYVVE 8358 Q +S E ++R+V R P+ G++ ++ P +G V Sbjct: 17 QGMSLISDEEYDRLVKRFPLEEEIGPKGDIPHLYRMYSLQKVYYNRGDKPPFNPLGQVET 76 Query: 8359 PKLDGLAVELVYRDGAFTGGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGTPPPRV 8538 KLDG A+ L+Y +G F TRG+G+ G DVT+N+R++ +P + P Sbjct: 77 DKLDGCAISLLYINGEFVQALTRGNGILGNDVTSNVRLLN-------IPKKISQKVP--T 127 Query: 8539 EVRGEVLLFKEHFEAMNRQLVRAGDEPFANPRNAAAGTLRQLDWRVTARR----PLSFVA 8706 ++ GEVL+ KE N RN A+G + D +R L FVA Sbjct: 128 QITGEVLITKE----------------VENKRNFASGAINLKDSDDFVQRIGEGGLIFVA 171 Query: 8707 YEALVPGGDPWRTHWEKLEALAAWGFETNPENRRCRGLGEVLAYRDRMAERRFELPYDTD 8886 Y T + L W EN + V R F TD Sbjct: 172 YGIQCSAESVGITEAYLKDML--W-----LENENFLTVVNV---------RSFFKWIPTD 215 Query: 8887 GIVVKVDDLDWRRRLGAASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDP 9066 G VV+++D + R G +KFPR A A K + E T + ++ VG +G +TPV F+P Sbjct: 216 GKVVRINDNNKFFREGWTNKFPRGAFAIKEDEEGEITTLTKVEWQVGASGKVTPVGYFEP 275 Query: 9067 VRLSGAMVARATLHNEDEMRRKDILEGDWVLVRRAGEVIPEVVK 9198 V + A + +ATL+N D + D+ G + V RAG VIP +V+ Sbjct: 276 VIIDDATIVKATLNNVDYINSLDLEIGCQIRVIRAGGVIPCIVE 319 >ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family Length = 92 Score = 69.3 bits (168), Expect = 2e-11 Identities = 33/89 (37%), Positives = 54/89 (60%) Frame = +1 Query: 17491 MLKSDLINILVVKRGVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQG 17670 M K++LI + K+GV++K+ ++E +FD++ +AL GE + I G G F V+ +G Sbjct: 1 MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60 Query: 17671 RNPKTGEVIPVKPKRGILFRTGKELRDRV 17757 RNP+TGE I + + F+ K L+D V Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALKDAV 89 >ref|YP_024677.1|gp04 Length = 90 Score = 61.2 bits (147), Expect = 5e-09 Identities = 31/89 (34%), Positives = 48/89 (53%) Frame = +1 Query: 17491 MLKSDLINILVVKRGVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQG 17670 M KSDLIN + + G+T+ + +E + + + +L KG+ + + G G F V G Sbjct: 1 MNKSDLINHVAAETGMTKTDSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTG 60 Query: 17671 RNPKTGEVIPVKPKRGILFRTGKELRDRV 17757 RNP TGE I + + F+ GK L+D V Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKDAV 89 >ref|YP_006945.1|NAD-dependent DNA ligase, subunit B Length = 259 Score = 48.9 bits (115), Expect = 3e-05 Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 9/258 (3%) Frame = +1 Query: 9244 PAECPVCGARVVREEGEKVYRCTGAACPAQLVGRICHFAQRRALDIEGLGEKLAAGLVER 9423 P +CP CG+++ G+ R + CPAQ I +F + + ++G G K +E+ Sbjct: 6 PTQCPSCGSKLDLVNGQLFCR-NKSNCPAQSSKLIENFCTK--MKLKGFGPKT----IEK 58 Query: 9424 GQVKDFADLYAVPFEVWQQLFSRPRKEQDAGAARELPEKSAQNMVAALERS--RSTTLRR 9597 ++ ++L+ + E+D R + K A +++ L Sbjct: 59 LELTKISELFYLT-------------EEDL--VRAVGSKVAAKLISELNTKVRGDIDFGS 103 Query: 9598 FLFALGIPQVGEATAATLARHFGDLARILDADEEALKGVRDVGPETASEIRAWTQEPQNR 9777 L +LGIP +GE A L+++ + AD +A +AW PQ + Sbjct: 104 VLGSLGIPLIGEVAAKKLSQNCTSFQDV-KADGKA-----------GENYKAWLNSPQGK 151 Query: 9778 RVVER--LLAAGVR-PEPEVVEARGPFA---GKTVVLTGGLSAM-SRDDAKAEVERRGGK 9936 V+E + G++ + EV+ G A G TV +TG L +R DA +E G Sbjct: 152 DVIELPWKFSKGIKGAKAEVIITDGLVAQPNGITVCITGSLQDFANRTDATNYLEGLGYT 211 Query: 9937 VSGSVSRKTDLVVAGEEA 9990 V SV++ ++ +E+ Sbjct: 212 VKKSVTKDVKYLICEDES 229 >ref|NP_775240.1|hypothetical protein Length = 507 Score = 45.1 bits (105), Expect = 4e-04 Identities = 52/185 (28%), Positives = 76/185 (41%), Gaps = 15/185 (8%) Frame = +1 Query: 9496 RKEQDAGAARELPEK---SAQNMVAALERSRSTTLRRFLFALGIPQVGEATAATLARHFG 9666 R + A AA E PE+ +AQ + A E + L R LG P AA G Sbjct: 45 RVRRAAQAALENPERWSRAAQEVAPAAEATGRGALGRIAGILGGPVGVGVQAAVTPADIG 104 Query: 9667 DLARILDAD-EEALKGVRDVGPETASEIRAWTQEPQNRRVVER--------LLAAGVRPE 9819 D R + +A + V ++GPE A W Q R + LL+ GV P Sbjct: 105 DQERTRAEEMAQAAQAVENMGPEVAQSANQWAQGVGQRAAQKATGGPQGAGLLSYGVTPN 164 Query: 9820 PEVVEARGPFAGKTVVLTGGLSAMSRDDAKAEVERRG---GKVSGSVSRKTDLVVAGEEA 9990 +E P V G + ++A +V ++G G SG+VSR ++ A EA Sbjct: 165 QPSIE---PEIAPEVASEAGAAVAEEEEANRQVIQQGAIEGLRSGAVSR-PEMAQAVVEA 220 Query: 9991 GSKLE 10005 ++ E Sbjct: 221 DAQRE 225 >ref|NP_932452.1|hypothetical protein Length = 72 Score = 37.4 bits (85), Expect = 0.075 Identities = 18/23 (78%), Positives = 20/23 (86%) Frame = +3 Query: 7419 GFTLIELMTVVAIIGILASVAIP 7487 GFTLIELM VV II ILA++AIP Sbjct: 3 GFTLIELMIVVVIIAILAAIAIP 25 >ref|NP_958259.1|hypothetical protein Length = 166 Score = 36.2 bits (82), Expect = 0.17 Identities = 19/47 (40%), Positives = 19/47 (40%) Frame = +3 Query: 14508 RPHHQPHLAARPAPRVHADGGPHRHLAADREGRRASPAPRDRGPHAP 14648 RP QP A PAPR H D A R RR P P P P Sbjct: 14 RPERQPARRAHPAPRRHVDDDRRHDRRAARRRRRPRPPPEPSHPPRP 60 >ref|NP_943922.1|hypothetical protein Length = 28 Score = 35.0 bits (79), Expect = 0.37 Identities = 17/23 (73%), Positives = 19/23 (82%) Frame = +3 Query: 7419 GFTLIELMTVVAIIGILASVAIP 7487 GFTLIEL+ VVAI+GIL SV P Sbjct: 3 GFTLIELIVVVAILGILFSVVAP 25 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 34.7 bits (78), Expect = 0.49 Identities = 44/137 (32%), Positives = 53/137 (38%), Gaps = 7/137 (5%) Frame = -3 Query: 7757 ALPPGFGAERVVHVAKDLLPGREDDAPAARPEVDGTLAGG----RWERRLEVREQVPARE 7590 A+P G GA RV +D R P R V L G R RR+ R +V AR Sbjct: 141 AVPLGPGA-RVRTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARP 199 Query: 7589 VPVLDEDLHRAGLHPQHELVALRRLGPERRPHRQRNRDAGEDPDDRHHRHELDEREPCGR 7410 P R HP+H R + P RR R+ R A P R HR P Sbjct: 200 GPGAARRPRRRP-HPEHP----RAVRPRRRTGRRHRRRASLRPRHRRHRSTPPMNTPLTL 254 Query: 7409 ASDLLHGVLSFA---PW 7368 A L V+ +A PW Sbjct: 255 AGLALTAVILWANLRPW 271 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,372,848 Number of Sequences: 14420 Number of extensions: 1033999 Number of successful extensions: 4187 Number of sequences better than 0.5: 9 Number of HSP's better than 0.5 without gapping: 2932 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4182 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 11875783976 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig43 (24,378 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_835731.1|similar to RNA polymerase ECF-type sigma factor 55 4e-07 ref|NP_958267.1|hypothetical protein 36 0.16 ref|NP_620341.1|P12 protein 36 0.21 ref|NP_064745.1|gp7 35 0.27 >ref|NP_835731.1|similar to RNA polymerase ECF-type sigma factor Length = 199 Score = 54.7 bits (130), Expect = 4e-07 Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 9/190 (4%) Frame = -2 Query: 4055 QNDLTRDEFQELALKHIDPLYSAALRLTKNDRDAEDLVQDTFLRAYRFFDKFE--RGTNI 3882 QN ++ L ++ + L + + TK++ + ED+VQDTFLR R FD + G + Sbjct: 17 QNVPLEIRYEVLYSRYAERLKNFGKKYTKSEHEIEDMVQDTFLRLLR-FDSYSVVEGASF 75 Query: 3881 KAWLFKILTNTFINRYRRSVKE-----RNIVEGSERDAVHERFVSREAAEYAANPEQYFF 3717 +++ + + I RYR + + + +RD V E+ E + EQY Sbjct: 76 ATYIYTVFKSVVITRYRYNSRRGPRIYMEEITFGDRDTP----VEIESGEPLLD-EQYEL 130 Query: 3716 DRLLS--DDVLKAVDSLPIDFRMVVILADLQEFSYKEIAEILDVPVGTVMSRLYRGRRLL 3543 R + + L+ D+ P M + ++ + + +AE ++P+GTV SR+ R R L Sbjct: 131 KRAVEVIQEELEKGDN-PFYNIMKQYMELKEKCAMQALAEKNNIPIGTVKSRINRARHRL 189 Query: 3542 QKALASYAVV 3513 ++AL V+ Sbjct: 190 REALVKKKVI 199 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 36.2 bits (82), Expect = 0.16 Identities = 40/122 (32%), Positives = 45/122 (36%), Gaps = 12/122 (9%) Frame = -2 Query: 20138 ASQPRGRAPLADGQLHPSA------APHERDQLARRPLPERPDP---ARRLVARERGGDR 19986 A P R P + HP A PH AR P+ P+P RR +R G R Sbjct: 11 ARPPHTRTPAPRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRAPSRPAAGPR 70 Query: 19985 RAAQVGRADRGHHVPE---PVGGQRHPAHRAPGDLGRGPLEPHRIGHLPAERRGRPAAGE 19815 R V R PE G HPA APG P P + PA RP A E Sbjct: 71 RHPPVARTRPRTRAPECAPDPGPAVHPA--APGCAPAAPAAPE---YAPAL---RPRAPE 122 Query: 19814 VD 19809 D Sbjct: 123 CD 124 >ref|NP_620341.1|P12 protein Length = 195 Score = 35.8 bits (81), Expect = 0.21 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Frame = -3 Query: 16384 VEAAVRVLEDDPLFNAGRGAALTAEGTVELDASIMDGATLACGAVAAVRDVANPVTLARA 16205 V+ A R L P A L + A ++ G L+ +A+V ANP A Sbjct: 15 VQMAARALGLSPAEVAAIDGTLGRVSAMPAVAVVLGGKPLSLATIASVVSDANPSATVGA 74 Query: 16204 VMERSPHVLLAGEGASALARE-VGIPACDP 16118 +M ++ + EGASALA+ VG DP Sbjct: 75 LMPAVQGMVSSDEGASALAKTVVGFMESDP 104 >ref|NP_064745.1|gp7 Length = 540 Score = 35.4 bits (80), Expect = 0.27 Identities = 32/120 (26%), Positives = 51/120 (42%) Frame = -3 Query: 10420 ATTRSQRLPFSFSRARAMTSSVSAANPTSTGAPGLPAWRAPSPARMSGVRASTSVSSPGF 10241 +T +Q S S A TS+ +AA + A A A S A+ S S+ Sbjct: 183 STATTQASAASVSATNAATSASNAATSATNAAASQAA------AATSETNAAASESTVTT 236 Query: 10240 FLSLCAAGAAGR*SETAAAPTNRSISAWAASTARAISSAVSTRTTSTPAGSSSAVGPETS 10061 + A A + + A T + +A +ASTA ++ +T T+ + +SSA TS Sbjct: 237 SATNAATSEANAATSASTATTQATNAATSASTASTSATNAATSETNAASSASSAASSATS 296 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,803,180 Number of Sequences: 14420 Number of extensions: 1077916 Number of successful extensions: 4850 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 3075 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4835 length of database: 3,019,461 effective HSP length: 111 effective length of database: 1,418,841 effective search space used: 11370591774 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig44 (21,088 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,338,369 Number of Sequences: 14420 Number of extensions: 892959 Number of successful extensions: 3782 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 2635 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3771 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 9915299598 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig45 (30,296 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817550.1|gp101 37 0.11 ref|NP_612899.1|hypothetical protein 37 0.15 ref|NP_542287.1|unknown 36 0.26 ref|NP_958297.1|hypothetical protein 35 0.33 ref|NP_944303.1|conserved phage mega protein 35 0.44 ref|NP_892081.1|relication protein RepA 35 0.44 >ref|NP_817550.1|gp101 Length = 231 Score = 37.0 bits (84), Expect = 0.11 Identities = 27/95 (28%), Positives = 41/95 (43%) Frame = +2 Query: 11126 RRYLAAHEDGTGSTDALLAEISAAAGRDVAGPFRTFLSQPGVPRVEAAVACEASGARVRL 11305 RR + H G T+ +L E +AAA + +G ++ L + G R GA Sbjct: 63 RRVVTPHASGRWPTNVVLDEAAAAALDEQSGTLKSGLMRAGTKRAAR------DGAVYGR 116 Query: 11306 RQARALPRGSAVPAGGAWRIPVCLRYEAAGAVRER 11410 A PR + +GGA R +Y+A +ER Sbjct: 117 LDEDATPRDTYADSGGASRFFPVFKYQAKAPTKER 151 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 36.6 bits (83), Expect = 0.15 Identities = 21/61 (34%), Positives = 26/61 (42%) Frame = +2 Query: 25652 GPQGEVRPRRERGEALPAAREAARGDVLGGGPAVRPALHAGEGRAGVPPRRARLGGEGRQ 25831 GP G P+ ERGEA P ARG+ GP P G G + +G G + Sbjct: 338 GPAGPQGPKGERGEAGPQGPMGARGERGDTGPRGEPGPAGPRGERGETGPQGPMGARGER 397 Query: 25832 G 25834 G Sbjct: 398 G 398 >ref|NP_542287.1|unknown Length = 224 Score = 35.8 bits (81), Expect = 0.26 Identities = 47/158 (29%), Positives = 66/158 (41%), Gaps = 4/158 (2%) Frame = +3 Query: 16890 TATAPSGPTSRRQGRTSRCVE----VVSPATSRWRGSAWVTAIPSGTRHPGRKAPAAPGP 17057 T T+ PT R R RC SP RW SAW T S +R K +A GP Sbjct: 27 TCTSRMRPTWTRPER--RCASPTRSAASPTFRRWTRSAWPT---SRSRRLRSKISSARGP 81 Query: 17058 NSAERMSAPVRSSGAADSRPSPGR*RPAERGSSSSKSRWIQALRSRLSSTSPARSGRAHQ 17237 A+R S S AA S+ S++S+ ++L S+ +T+P H+ Sbjct: 82 --AQRSSKRRLPSIAAWSK-------------HSARSQRARSLPSKSLATAP-----QHR 121 Query: 17238 IAAARSAFTAPAEVPVTAASRGRNSAPTSARPSRTVAR 17351 I AR+ +P + GR + P S SR+ R Sbjct: 122 IPLARTRDPIRL-LPALMGACGRRARPRSIATSRSAMR 158 >ref|NP_958297.1|hypothetical protein Length = 214 Score = 35.4 bits (80), Expect = 0.33 Identities = 39/122 (31%), Positives = 52/122 (42%), Gaps = 8/122 (6%) Frame = +3 Query: 23889 DALRLRRPGTDLAFTVAGQTPQGIAEGPVVQEDLFRMVGVSFDPLTYFGTRV---ATGRI 24059 DALRL RPG D+A A + G E + DL+ V + L G RV I Sbjct: 50 DALRLVRPGLDVAAEYAAREAAGRGE-HLDDTDLYDDVRPALAALQALGVRVIIAGNQTI 108 Query: 24060 RGDVLLTALELAIGISTADDDYVPQLSGARLVYDS--SLAGPPRIRSLEVGGAPVD---P 24224 R LL L+L + + ++ R +D +AG PR L VG P + P Sbjct: 109 RAGELLRGLDLPVDVIATSGEW-GCAKPTREFFDRVVDVAGTPRQSILYVGDHPANDTIP 167 Query: 24225 AA 24230 AA Sbjct: 168 AA 169 >ref|NP_944303.1|conserved phage mega protein Length = 4602 Score = 35.0 bits (79), Expect = 0.44 Identities = 49/187 (26%), Positives = 67/187 (35%), Gaps = 41/187 (21%) Frame = +3 Query: 16893 ATAPSGPTSRRQGRTSRCVEVVSPATSRWRGSAWV-----------TAIPSG-------- 17015 A APSGP R R + V P ++ G+ + T P G Sbjct: 634 APAPSGPIGRAMERANGPVPAAVPEAAQPAGNGQIVVGDDGQQYRLTTGPDGVTFEPIAD 693 Query: 17016 -TRHPGRKAPAAPGPNSAERMSAPV------RSSGAADSRPSPGR*RPAERGSSSSKSRW 17174 T P AAP P + AP + AA + P+P +PAER S + W Sbjct: 694 ETAAPAPADEAAPAPTEVKPEPAPAAPETKPETKAAAPTEPAPREQKPAER----SLTEW 749 Query: 17175 IQ-ALRSRL--------------SSTSPARSGRAHQIAAARSAFTAPAEVPVTAASRGRN 17309 + LR RL + R + +I APAE PVTAA Sbjct: 750 SEPELRDRLRYLTKQAKLNGGWTKMLTTERRKVSAEIDRRNEGAPAPAE-PVTAARIEEP 808 Query: 17310 SAPTSAR 17330 +A +A+ Sbjct: 809 AAAPAAQ 815 >ref|NP_892081.1|relication protein RepA Length = 1330 Score = 35.0 bits (79), Expect = 0.44 Identities = 25/86 (29%), Positives = 38/86 (44%) Frame = -2 Query: 26032 WNRVSASVQLTSTGSPGFPFTKFALFETMVGTSPSNRSWARYAFIHAPERLPSRAYGSKY 25853 WN S+ +QLT++ P FTK+ G +P+ S + RL S G KY Sbjct: 37 WNECSSEIQLTTSRGPSEKFTKY------TGHAPAVTSPKLRGKVEIYSRLESTPDGIKY 90 Query: 25852 QRPTCRPLPSFTSQTRTSGWYTGTPF 25775 P +F S+ +G ++G F Sbjct: 91 ------PFVNFVSKGADAGVWSGLQF 110 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,108,636 Number of Sequences: 14420 Number of extensions: 1329696 Number of successful extensions: 6204 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 3497 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6148 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 13879159985 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig46 (28,811 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 55 3e-07 ref|NP_542342.1|unknown 36 0.24 ref|YP_164321.1|hypothetical protein 35 0.32 >ref|NP_046572.1|ABC transporter Length = 705 Score = 55.5 bits (132), Expect = 3e-07 Identities = 49/206 (23%), Positives = 97/206 (47%), Gaps = 6/206 (2%) Frame = +3 Query: 21396 HALKGVSLTVERGEFTAIMGASGSGKSTLMNLLGCLDRPTRGRYLLEGHDVSGLSADALA 21575 + ++ ++L ++R + I+G SG+GKST L L + L G D++ Sbjct: 497 YIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDH---L 553 Query: 21576 ALRNRTLGFVFQSFNLLSRTSALENVELPMMYSGTP------SAERHRRALEALEQVGLT 21737 ++R R + F L + + EN+ + ++ ++ H +Q Sbjct: 554 SIRKRIVYIDENPF--LFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSY- 610 Query: 21738 GRADHHPSQLSGGQQQRVAIARALVNRPRVLLADEPTGNLDSRTSVEVMAILQALGATGI 21917 + + S LS GQ+QR+A+ARA++++P+VL+ DE N+D + I + L Sbjct: 611 -KLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNT---KLIYETLHRMDC 666 Query: 21918 TVVLVTHENDIAAYASRVLVMRDGKL 21995 ++L+TH + ++ LV R+ ++ Sbjct: 667 LIILITHNDPSNFKYNKKLVFRNNRI 692 >ref|NP_542342.1|unknown Length = 164 Score = 35.8 bits (81), Expect = 0.24 Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 1/107 (0%) Frame = +1 Query: 3937 TCTACSRPEPRSKVRAAGWCGFSSRASASPACATTVRAVPRERLPSASIASVMRIAPGRR 4116 T T CS P P S+ R C SSR++ + A R P+ PSAS R+A Sbjct: 11 TPTTCSSPLPISRTRD---CARSSRSAPTGRSAPWSRRSPKSPRPSAS-----RLA--NP 60 Query: 4117 RATCAARQSVGTTSKPAPESSITPARSAWSPMAASARYTPASP-ARS 4254 R + AR + +++ P + S MA S R T ASP ARS Sbjct: 61 RWSSLARSFPFSPPTRNTSAALWPRDRSCSSMAPSIRKTAASPIARS 107 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 35.4 bits (80), Expect = 0.32 Identities = 29/72 (40%), Positives = 32/72 (44%) Frame = -1 Query: 3023 GLAGHLRRREPALALHRARAGADHPGAVGHRLVERAHQPRPVEQLPGVHRHAPHGREVVR 2844 G +GHL REPAL R AG G R V+R H P P R P G+ R Sbjct: 281 GASGHLGNREPAL---RRAAGP------GPRAVDREHAPEH-GAAPVRGRPLPRGKPDQR 330 Query: 2843 AQLGDGPVVGAE 2808 Q D PV AE Sbjct: 331 VQRADQPVQRAE 342 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,975,349 Number of Sequences: 14420 Number of extensions: 1266890 Number of successful extensions: 5416 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 3292 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5410 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 13191109490 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig47 (19,604 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_024985.1|putative integrase 230 5e-60 ref|YP_024428.1|integrase 230 5e-60 ref|NP_945242.1|hypothetical protein 185 1e-46 ref|NP_543074.1|hypothetical protein 162 9e-40 ref|NP_958272.1|hypothetical protein 97 8e-20 ref|NP_958698.1|Bbp29 67 5e-11 ref|NP_996591.1|primase 67 5e-11 ref|NP_996639.1|primase 67 5e-11 ref|YP_164400.1|22 64 6e-10 ref|NP_690795.1|ORF11 62 2e-09 ref|YP_024966.1|putative primase 53 1e-06 ref|NP_050131.1|putative DNA-polymerase or DNA-primase 50 9e-06 ref|NP_680517.1|putative primase 50 1e-05 ref|NP_919008.1|conserved hypothetical protein 50 1e-05 ref|NP_511033.1|primase 44 6e-04 ref|NP_700378.1|Pro-head protease 43 0.001 ref|NP_945034.1|gp4 42 0.003 ref|NP_543091.1|putative prohead protease 41 0.005 ref|NP_817502.1|gp53 39 0.015 ref|NP_076615.1|protease 39 0.020 ref|YP_024889.1|putative primase 38 0.034 ref|NP_859328.1|hypothetical protein 37 0.076 ref|NP_612960.1|hypothetical protein 37 0.076 ref|NP_859162.1|hypothetical protein 37 0.076 ref|NP_037665.1|head maturation protease 37 0.076 ref|NP_050500.1|integrase 37 0.076 ref|NP_049461.1|integrase 37 0.076 ref|NP_050964.1|hypothetical protein 37 0.076 ref|NP_818386.1|gp85 37 0.100 ref|NP_037700.1|protease 36 0.13 ref|NP_061531.1|integrase 35 0.22 ref|NP_612851.1|putative integrase 35 0.22 ref|NP_543053.1|putative integrase 35 0.29 >ref|YP_024985.1|putative integrase Length = 762 Score = 230 bits (586), Expect = 5e-60 Identities = 149/531 (28%), Positives = 260/531 (48%), Gaps = 18/531 (3%) Frame = +1 Query: 7108 LDAIDPD-VGHDEWLRVGMALHFGFEGSAEGLALWNEWSAGGGKYKNGEPADRWRSFKRN 7284 L+ IDPD + +DEWL V A+H + +G L + WS G +YK E + RW+SF + Sbjct: 231 LEYIDPDELEYDEWLAVLQAVHSQYPDD-QGYELADRWSQRGARYKPDEVSIRWQSFDEH 289 Query: 7285 G-VTLGSLFHFAKKHGWRPEPTAEQDFGPALARDEAFVSLDDLNSQFFVIEESGRHFVAC 7461 G + +G+L +FA+K+G++P + P+ D + N +F V+ + + Sbjct: 290 GTIRVGTLIYFAQKNGFKPNTEPKGAEEPSEDTDSVVA---EYNKKFGVVMVGNKLRILM 346 Query: 7462 ESYDHARRRRMLKRFSFAEFKARYLGRTVL--NEKGRQIPMAKS--WLEWPGRRQYLGGV 7629 E ++ + K S +FKA V + KG+ P+ KS W RR+++ G+ Sbjct: 347 EQFNPDPFQDNFKLMSVQDFKALMANDIVWYGDSKGKSKPVQKSDIWFVNEKRREFVNGL 406 Query: 7630 VFVPGRSLPSD-VLNLWGGWAVAPKPGDWSLLREHIHDVICSKNDELDAYVMGWLRRLVQ 7806 F+P + D N+W GW GDWSL ++H+ V+ S+ E ++M W +Q Sbjct: 407 TFMPDKPREVDGCFNVWEGWRYKEVAGDWSLFKKHVKAVVGSQ--EHYGWLMDWFADALQ 464 Query: 7807 RPDEPGEVVLVLRGVQGAGKSVVGYALQRMCGQHGMAVASQRAVTGQFNAHLRDLLLLVA 7986 P P +V++G++G GK + + GQH + + + G+FN HL + LL+ A Sbjct: 465 DPMNPKGCAVVMKGIEGTGKGTIANVFGELFGQHYKHIIQEEQLIGKFNGHLEEALLVFA 524 Query: 7987 NEAVFPGDRSGTSALKALATDPTIFLEQKGIDAVEVPNYLHILMTTNENWAVPVALDDRR 8166 +E + G++ LK L T+ + +E+KG+DA N L +++ +NE+W +P RR Sbjct: 525 DEVTYGGNKKVAGTLKGLVTEKKLMIERKGLDATPYRNCLRLMIASNEDWFIPAGPHSRR 584 Query: 8167 FAVLDVASSRVGNRPYFRALQAAVRNDDVIAAMLHDLLSEPLGSYEVRDIPRTEARHEQM 8346 + V+DV S ++ YF A+ + N AM+++L + + S ++R P T+ EQ Sbjct: 585 WFVIDVPDSFASDKSYFDAIWKQMENGG-YEAMMYELRNREIKS-DLRKAPETKLLMEQR 642 Query: 8347 MQ--SLEGAEAWLFHVLTLGELSPSA-------VEWPTFAATTTLYQSHEDWARSGKHRR 8499 + + + W + G + + V+WP F +LY +++W ++ +R Sbjct: 643 ARYTTTDSVVEWWADKVEAGVIGVTGYEEFGDEVDWPQFVDKASLYVDYQEWCQANGAKR 702 Query: 8500 LQDPAVIGRFLARF-FATERPRSV-GGARVRGYQLGTLAEARERFCSVLGL 8646 L PA + F F RP + GG R R +++ R + G+ Sbjct: 703 LTKPAFYAKVERDFKFVDCRPANPHGGPRKRMFEIMNHGACRALLFKMTGI 753 >ref|YP_024428.1|integrase Length = 762 Score = 230 bits (586), Expect = 5e-60 Identities = 149/531 (28%), Positives = 261/531 (49%), Gaps = 18/531 (3%) Frame = +1 Query: 7108 LDAIDPD-VGHDEWLRVGMALHFGFEGSAEGLALWNEWSAGGGKYKNGEPADRWRSFKRN 7284 L+ IDPD + +DEWL V A+H + +G L + WS G +YK E + RW+SF + Sbjct: 231 LEYIDPDELEYDEWLAVLQAVHSQYPDD-QGYELADRWSQRGARYKPDEVSIRWQSFDEH 289 Query: 7285 G-VTLGSLFHFAKKHGWRPEPTAEQDFGPALARDEAFVSLDDLNSQFFVIEESGRHFVAC 7461 G + +G+L +FA+K+G++P + P+ D + N +F V+ + + Sbjct: 290 GTIRVGTLIYFAQKNGFKPNTEPKGAEEPSEDTDSVVA---EYNKKFGVVMVGNKLRILM 346 Query: 7462 ESYDHARRRRMLKRFSFAEFKARYLGRTVL--NEKGRQIPMAKS--WLEWPGRRQYLGGV 7629 E ++ + K S +FKA V + KG+ P+ KS W RR+++ G+ Sbjct: 347 EQFNPDPFQDNFKLMSVQDFKALMANDIVWYGDSKGKSKPVQKSDIWFVNEKRREFVNGL 406 Query: 7630 VFVPGRSLPSD-VLNLWGGWAVAPKPGDWSLLREHIHDVICSKNDELDAYVMGWLRRLVQ 7806 F+P + D N+W GW GDWSL ++H+ V+ S+ E ++M W +Q Sbjct: 407 TFMPDKPREVDGCFNVWEGWRYKEVAGDWSLFKKHVKAVVGSQ--EHYEWLMDWFADALQ 464 Query: 7807 RPDEPGEVVLVLRGVQGAGKSVVGYALQRMCGQHGMAVASQRAVTGQFNAHLRDLLLLVA 7986 P P +V++G++G GK + + GQH + + + G+FN HL + LL+ A Sbjct: 465 DPMNPKGCAVVMKGIEGTGKGTIANVFGELFGQHYKHIIQEEQLIGKFNGHLEEALLVFA 524 Query: 7987 NEAVFPGDRSGTSALKALATDPTIFLEQKGIDAVEVPNYLHILMTTNENWAVPVALDDRR 8166 +E + G++ LK L T+ + +E+KG+DA N L +++ +NE+W +P RR Sbjct: 525 DEVTYGGNKKVAGTLKGLVTEKKLMIERKGLDATPYRNCLRLMIASNEDWFIPAGPHSRR 584 Query: 8167 FAVLDVASSRVGNRPYFRALQAAVRNDDVIAAMLHDLLSEPLGSYEVRDIPRTEARHEQM 8346 + V+DV S ++ YF A+ + N AM+++L + + S ++R P T+ EQ Sbjct: 585 WFVIDVPDSFASDKSYFDAIWKQMENGG-YEAMMYELRNREIKS-DLRKAPETKLLMEQR 642 Query: 8347 MQ--SLEGAEAWLFHVLTLGELSPSA-------VEWPTFAATTTLYQSHEDWARSGKHRR 8499 + + + W + G + + V+WP F +LY +++W ++ +R Sbjct: 643 ARYTTTDSVVEWWADKVEAGVIGVTGYEEFGDEVDWPQFVDKASLYVDYQEWCQANGAKR 702 Query: 8500 LQDPAVIGRFLARF-FATERPRSV-GGARVRGYQLGTLAEARERFCSVLGL 8646 L PA + F F RP + GG R R +++ + R + G+ Sbjct: 703 LTKPAFYAKVERDFKFVDCRPANPHGGPRKRMFEIMNHSACRALLFKMTGI 753 >ref|NP_945242.1|hypothetical protein Length = 513 Score = 185 bits (470), Expect = 1e-46 Identities = 125/388 (32%), Positives = 189/388 (48%), Gaps = 4/388 (1%) Frame = -2 Query: 15910 NLIAERDQFTAA--EQKRRAELNGTYQGAFATYQRLKQEVTLLEETLEDISFGLYKPHYT 15737 N + E+ A+ E R+ E + + + K + + +ET D + + Sbjct: 137 NALQEKYSLKASLKELSRKVEKLKQEEKDYEAILKEKSNIVIAQETTVDFTDNI------ 190 Query: 15736 FETSEQFKGALASIYEQKRELIRGGVAATCETTWTVGNSERDGKRMVKQQTKLMLRAFNG 15557 TS + K L+ + +++ELI G A C +T S D K+ KQ KL LRAFN Sbjct: 191 --TSNELKNTLSILQIKEKELIADGKA--CRST-----SYDDYKKREKQSKKL-LRAFNA 240 Query: 15556 EVDAAVAKVTWNNVTKMEERIRKCASAINDTGTVMRCSISPQFVELALAELRLTYXXXXX 15377 E D + V NNV +I S +N ++ ++ + + + L +L TY Sbjct: 241 ETDYYLTNVRMNNVDTYRNKITNTFSTLNRLFSIDNVQVTKELLNIKLEKLDATYKYYYV 300 Query: 15376 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETRFEKALAKARAEVEKAKGEELAK 15197 E +F K +AK +E + + + Sbjct: 301 LEQERELLKAKKEELREQQRVEKELQTQKDKIIKEENQFRKEVAKLMKYLESSNTDIEKE 360 Query: 15196 ANA-KMAELEQRLSEAHAKMQKATSMAQLTKSGHVYVISNVGSFGDKTFKIGMTRRLDPL 15020 A K+ ELE ++ E + + T++G VY+ISN+GSFG+ +KIGMTRRL+P+ Sbjct: 361 LYADKIKELEDKIKELEKDKKDVENRETNTRAGFVYIISNIGSFGENVYKIGMTRRLEPM 420 Query: 15019 DRVYELSDASVPFDFDVHAMIYSEDAPGLENAFHKAFADRRVNLVNLRREFFNVSLDEIE 14840 DR+ ELS ASVPF FDVHA+I+SEDAP LE H F + VN VN R+EFF V+L+EI+ Sbjct: 421 DRISELSSASVPFPFDVHALIFSEDAPALETTLHNYFRKQEVNKVNSRKEFFRVNLEEIK 480 Query: 14839 EFARKQ-NLAIEFTKVTEAREYRETISI 14759 + K+ N + FT V A +YRET+ + Sbjct: 481 DLVHKEFNNTVHFTDVAVAEQYRETLRV 508 >ref|NP_543074.1|hypothetical protein Length = 409 Score = 162 bits (411), Expect = 9e-40 Identities = 82/171 (47%), Positives = 115/171 (67%), Gaps = 4/171 (2%) Frame = -2 Query: 15259 EKALAKARAEVEKA----KGEELAKANAKMAELEQRLSEAHAKMQKATSMAQLTKSGHVY 15092 EK L + + +++A +G A+ + ELEQ++++ H + ++A SMAQLT+ GHVY Sbjct: 222 EKRLEEQQRAIDEALALAEGTYKAELEQQRLELEQKIADVHKQYERAKSMAQLTRQGHVY 281 Query: 15091 VISNVGSFGDKTFKIGMTRRLDPLDRVYELSDASVPFDFDVHAMIYSEDAPGLENAFHKA 14912 +ISN+GSFG+ +K+GMTRRL+P+DRV EL DASVPFDFDVHAMI +DAP LE A H Sbjct: 282 IISNIGSFGENVYKVGMTRRLEPMDRVKELGDASVPFDFDVHAMISCDDAPALEKALHDY 341 Query: 14911 FADRRVNLVNLRREFFNVSLDEIEEFARKQNLAIEFTKVTEAREYRETISI 14759 RVN VNLR+EFF V L++I E + + IE+ A +Y T+ + Sbjct: 342 LERYRVNKVNLRKEFFRVELEKIIEVVKHHHGNIEYVANPAALQYYRTLEM 392 >ref|NP_958272.1|hypothetical protein Length = 193 Score = 96.7 bits (239), Expect = 8e-20 Identities = 64/172 (37%), Positives = 84/172 (48%), Gaps = 1/172 (0%) Frame = +1 Query: 6502 RAALPAQLIATDAWVGHKAKK-PLILPGCARLAKTNDPKTWRPFRDALAFLKRTYDDPQA 6678 R +PA+L + WV H A+K PL + G +A + D TW +RDA+A A Sbjct: 36 RRTVPAELTSRPRWVRHTARKVPLTVGGS--VASSTDSSTWSRYRDAVA------SSAGA 87 Query: 6679 GVGFVFQRKLGVVFIDFDHCLDTSGXXXXXXXXXXXXFRGTYVERSLSGRGLHVLALGSV 6858 G+GFV G+V +D DH LD G T+VE S SG GLHV GS+ Sbjct: 88 GIGFVLDGD-GIVCLDLDHALDVDGEVLPWAQRIVEAAGATWVEVSRSGSGLHVWGRGSL 146 Query: 6859 PHAFSKLVPPAAAGDEHIEVYSEKRYAAITGDTYDGAPAELLDKQKELDALL 7014 PH A G +E+Y R+ A+TG T+ P L D Q +DALL Sbjct: 147 PHGRR-----IAVGSGSVELYGTGRFIAVTGRTFGDMPRRLGDVQHIIDALL 193 >ref|NP_958698.1|Bbp29 Length = 854 Score = 67.4 bits (163), Expect = 5e-11 Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 7/111 (6%) Frame = +1 Query: 6976 ELLDKQKELDALLRALAPKATVAATRSDEHVPLSAQE------VDKIRSALDAIDPDVGH 7137 ++ + E L R K+ T + E PL A E + + R + +D + + Sbjct: 181 QVFEAMAEECGLARVTGSKSRTGLTSAPEDDPLMAYEPPVGIDLAEARRLVAYVDNE-DY 239 Query: 7138 DEWLRVGMALHFGFEGSAEGLALWNEWSAGGGKYKNGEP-ADRWRSFKRNG 7287 D WL+VGM+LH F+GS E LALW+EWSA Y + E A RW SF ++G Sbjct: 240 DTWLKVGMSLHHEFDGSGEALALWDEWSATASNYASSEDVARRWDSFGKSG 290 >ref|NP_996591.1|primase Length = 854 Score = 67.4 bits (163), Expect = 5e-11 Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 7/111 (6%) Frame = +1 Query: 6976 ELLDKQKELDALLRALAPKATVAATRSDEHVPLSAQE------VDKIRSALDAIDPDVGH 7137 ++ + E L R K+ T + E PL A E + + R + +D + + Sbjct: 181 QVFEAMAEECGLARVTGSKSRTGLTSAPEDDPLMAYEPPVGIDLAEARRLVAYVDNE-DY 239 Query: 7138 DEWLRVGMALHFGFEGSAEGLALWNEWSAGGGKYKNGEP-ADRWRSFKRNG 7287 D WL+VGM+LH F+GS E LALW+EWSA Y + E A RW SF ++G Sbjct: 240 DTWLKVGMSLHHEFDGSGEALALWDEWSATASNYASSEDVARRWDSFGKSG 290 >ref|NP_996639.1|primase Length = 854 Score = 67.4 bits (163), Expect = 5e-11 Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 7/111 (6%) Frame = +1 Query: 6976 ELLDKQKELDALLRALAPKATVAATRSDEHVPLSAQE------VDKIRSALDAIDPDVGH 7137 ++ + E L R K+ T + E PL A E + + R + +D + + Sbjct: 181 QVFEAMAEECGLARVTGSKSRTGLTSAPEDDPLMAYEPPVGIDLAEARRLVAYVDNE-DY 239 Query: 7138 DEWLRVGMALHFGFEGSAEGLALWNEWSAGGGKYKNGEP-ADRWRSFKRNG 7287 D WL+VGM+LH F+GS E LALW+EWSA Y + E A RW SF ++G Sbjct: 240 DTWLKVGMSLHHEFDGSGEALALWDEWSATASNYASSEDVARRWDSFGKSG 290 >ref|YP_164400.1|22 Length = 740 Score = 63.9 bits (154), Expect = 6e-10 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 8/169 (4%) Frame = +1 Query: 7108 LDAIDPD-VGHDEWLRVGMALHFGFEGSAEGLAL--WNEWSAGGG-KYKNGEPADRWRSF 7275 L+ IDP + + EWL VGMAL +EG W +WS G +Y GE +W +F Sbjct: 11 LEYIDPSYLDYQEWLNVGMAL------KSEGYTASDWEDWSKRDGPRYHPGECFKKWTTF 64 Query: 7276 KRNGVTLGSLFHFAKKHGWRPEPTAEQDFGPALARDEAFVSLDDLNSQFFVIEES---GR 7446 + NG+T ++ AK +GW+P + + LA D+ DD + VI+++ G+ Sbjct: 65 EGNGITGATITQMAKDNGWQPRQKEDHE----LAWDDEITGNDD----YVVIDKNWIEGK 116 Query: 7447 HFVACESYDHARR-RRMLKRFSFAEFKARYLGRTVLNEKGRQIPMAKSW 7590 ++ R L+ A Y+ T N++G+ +P +W Sbjct: 117 EIAEPANWQPVRELTTYLETLFEASESVGYVVSTWQNDEGKHLPTKGNW 165 >ref|NP_690795.1|ORF11 Length = 806 Score = 62.0 bits (149), Expect = 2e-09 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 4/205 (1%) Frame = +1 Query: 6481 KPSPEALRAALPAQLIATDAWVGHKAKKPLILPGCARLAKTNDPKTWRPFRDALAFL-KR 6657 K P+ L+ A L ++ G K K P + G LA++++ +TW F + F ++ Sbjct: 5 KNIPQELKNAPQWILWRSEERNGKKTKVPYQIDGS--LAQSSNKRTWSTFATIMKFFNEQ 62 Query: 6658 TYDDPQAGVGFVFQRKLGVVFIDFDHCLDTSGXXXXXXXXXXXXFRGTYVERSLSGRGLH 6837 YD G+GF+F + + ID DHC++ +Y E S SG G+H Sbjct: 63 EYD----GIGFMFSKDDPFIGIDIDHCVNDGVLSPFAQEIIQTI--SSYTEYSPSGEGVH 116 Query: 6838 VLALGSVPHAFSKLVPPAAAG---DEHIEVYSEKRYAAITGDTYDGAPAELLDKQKELDA 7008 ++A G +P L P D+ +EVY RY TG + D P E A Sbjct: 117 IIAKGKLP-----LRGPGTGRKNIDKGLEVYRHGRYFTFTGSSLDVGPVH------ERSA 165 Query: 7009 LLRALAPKATVAATRSDEHVPLSAQ 7083 ++ + K T DE P+S + Sbjct: 166 EIKTIFDK---YLTEKDEARPVSTR 187 >ref|YP_024966.1|putative primase Length = 888 Score = 52.8 bits (125), Expect = 1e-06 Identities = 53/153 (34%), Positives = 73/153 (47%), Gaps = 15/153 (9%) Frame = +1 Query: 6976 ELLDKQKELDALLRALAPKATVAATRSDEHVPLSAQ---EVDKIRSALDAIDPDVGHDE- 7143 EL D K A + + A R + +P +A E++ I+SALD I P+ G DE Sbjct: 219 ELDDMPKTFAAEMDWPSSAAVPLVAREEIVMPGTADVPVELELIKSALDMI-PNAGVDEL 277 Query: 7144 ----WLRVGMALHFGFEGSAEGLALWNEWSAGGGKYKNGEPADR-WRSFKRNG------V 7290 W V +H GS +GLAL +E+SA KY +R W + G + Sbjct: 278 DYEAWRDVVFGIHHAARGSDDGLALAHEFSARSSKYNPRFLDERVWPHIGKTGTDERAPI 337 Query: 7291 TLGSLFHFAKKHGWRPEPTAEQDFGPALARDEA 7389 T ++ H A+ HGW+ EP E DF A AR EA Sbjct: 338 TGRTILHLARAHGWQ-EP-IEDDFEVA-ARVEA 367 >ref|NP_050131.1|putative DNA-polymerase or DNA-primase Length = 771 Score = 50.1 bits (118), Expect = 9e-06 Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 5/187 (2%) Frame = +1 Query: 6553 KAKKPLILPGCARLAKTNDPKTWRPFRDALAFLKRTYDDPQAGVGFVFQRKLGVVFIDFD 6732 K K I P K+NDP TW F AL R D + G F G V +D D Sbjct: 32 KNSKIPINPYDGSAGKSNDPSTWSDFNTAL----RALDKIERADGLAFYFANGYVGLDVD 87 Query: 6733 HC-LDTSGXXXXXXXXXXXXFRG----TYVERSLSGRGLHVLALGSVPHAFSKLVPPAAA 6897 + D FR TY+E S SG+G+H + G +P + Sbjct: 88 NIGNDLQDFLVGAPETLVETFRKLTKKTYMEVSQSGKGIHAVFKGKIPGKHRR------- 140 Query: 6898 GDEHIEVYSEKRYAAITGDTYDGAPAELLDKQKELDALLRALAPKATVAATRSDEHVPLS 7077 + E+Y R+ A+TG+T + + LD ++ L L K V + + P++ Sbjct: 141 -KGNYEMYEAGRFFALTGNTIGSSQIQSLD-NSDMKHLYEFLFGKDKVIDISNYQDKPIN 198 Query: 7078 AQEVDKI 7098 + +I Sbjct: 199 DLSISEI 205 >ref|NP_680517.1|putative primase Length = 770 Score = 49.7 bits (117), Expect = 1e-05 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 5/125 (4%) Frame = +1 Query: 6595 AKTNDPKTWRPFRDALAFLKRTYDDPQAGVGFVFQRKLGVVFIDFDHC---LDT--SGXX 6759 A + +P W F +AL +LK++ AG+GF F G V ID DH LD +G Sbjct: 42 ASSTNPDDWTTFDNALQYLKQS---DFAGLGFFFVD--GYVGIDVDHIGPDLDRLENGDK 96 Query: 6760 XXXXXXXXXXFRGTYVERSLSGRGLHVLALGSVPHAFSKLVPPAAAGDEHIEVYSEKRYA 6939 +Y E SLSG G+H++ G +P + + +++E+Y R+ Sbjct: 97 QDNMAFEFLDAMKSYAETSLSGEGIHIIIRGKLPGSRHR--------KKNVEMYESGRFF 148 Query: 6940 AITGD 6954 A+TG+ Sbjct: 149 AMTGN 153 >ref|NP_919008.1|conserved hypothetical protein Length = 719 Score = 49.7 bits (117), Expect = 1e-05 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%) Frame = +1 Query: 7090 DKIRSALDAIDPDVGHDEWLRVGMALHFGFEGSAEGLALWNEWSAGGGKYKNGEPADRWR 7269 D++ + L + ++ W+ VGMAL ++G GL LW+EWS Y E +W+ Sbjct: 246 DELHAKLLLVPDADDYETWVNVGMALFHQYDGHERGLELWHEWSETADNYDAKELDAKWK 305 Query: 7270 SF-----KRNGVTLGSLFHFAKKHGWRPEPTAEQ 7356 SF R +T + AK+ E TAE+ Sbjct: 306 SFDISNKSRTPITARYIIKLAKE---AAEKTAEE 336 Score = 47.4 bits (111), Expect = 6e-05 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 2/133 (1%) Frame = +1 Query: 7786 WLRRLVQRPDEPGEVVLVLRGVQGAGKSVVGYALQRMCGQHGMAVASQRAVTGQFNAHLR 7965 WL ++Q P + VL+G + GK+ + + G + + + + G FN Sbjct: 545 WLAWIIQTQKRPNWAI-VLQGTESDGKTFFSDMMGVILGPENVKTLNAKTLEGAFNGWAE 603 Query: 7966 DLLLLVANEAVFPGDR--SGTSALKALATDPTIFLEQKGIDAVEVPNYLHILMTTNENWA 8139 LL E G + +K L T+ I + +KG+D N L+ TN A Sbjct: 604 GSLLNCVEEIKLHGHNRFDVLNQIKPLITNTAIEIHRKGVDPYNTINTAAYLLLTNFKDA 663 Query: 8140 VPVALDDRRFAVL 8178 +P+ +D R+ V+ Sbjct: 664 LPLVRNDTRYFVM 676 >ref|NP_511033.1|primase Length = 757 Score = 43.9 bits (102), Expect = 6e-04 Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Frame = +1 Query: 6607 DPKTWRPFRDALAFLKRTYDDPQAGVGFVFQRKLGVVFIDF--DHCLDTSGXXXXXXXXX 6780 D +TW F ALA L++ D G+GF F+ V ID D D Sbjct: 46 DERTWADFETALASLEKYQFD---GLGFYFKAPYFGVDIDDIKDDIQDYLYGNTENIAGE 102 Query: 6781 XXXFRGTYVERSLSGRGLHVLALGSVPHAFSKLVPPAAAGDEHIEVYSEKRYAAITGDTY 6960 +Y E S+SG G+H++A G+ P + +IE+Y + R+ +TG Sbjct: 103 FIQTLSSYTEYSVSGTGIHIIAKGNFPEGGRR--------KGNIEMYPDGRFFVMTGQVI 154 Query: 6961 D 6963 D Sbjct: 155 D 155 >ref|NP_700378.1|Pro-head protease Length = 228 Score = 43.1 bits (100), Expect = 0.001 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 2/101 (1%) Frame = +1 Query: 11200 RAPLPVLESHDRSKVNVGVVRDLKLD--GKRLRGELVLGQSERAKELAADIADGIVTGIS 11373 R LP L R +GV ++K D G ++G L++ AK A + G +TG+S Sbjct: 66 RKALPALLWQHRMDEPIGVYTEMKEDDVGLYVKGRLLIDDDPLAKRAHAHMKAGSLTGLS 125 Query: 11374 VGYTISQETRDEKAKRITATRWCPYEVSIVSVPADPSVGIN 11496 +GY + D + +EVS+V+ P++ I+ Sbjct: 126 IGYVLKDWEYDRSKEAFLLKEIDLWEVSLVTFPSNDEARIS 166 >ref|NP_945034.1|gp4 Length = 228 Score = 41.6 bits (96), Expect = 0.003 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 2/116 (1%) Frame = +1 Query: 11170 SHARGAVDLSRAPLPVLESHDRSKVNVGVVRDLKLDGKRLRGE--LVLGQSERAKELAAD 11343 S++ A+ S LPVL HD S +G LK D K L G+ L + ++ A+ Sbjct: 51 SNSLDALKKSGRALPVLWQHD-SYTPIGSWAGLKEDDKGLYGDGDLWIDEAPNARIAYRG 109 Query: 11344 IADGIVTGISVGYTISQETRDEKAKRITATRWCPYEVSIVSVPADPSVGINRSASM 11511 + +TG+S+GY + +EK T E+SIV+ PA+ + I+ S+ Sbjct: 110 MKAKAITGLSIGYYVLSSDYNEKTGIRTLNEVDLVEISIVTNPANANARIDAVKSI 165 >ref|NP_543091.1|putative prohead protease Length = 216 Score = 40.8 bits (94), Expect = 0.005 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 2/98 (2%) Frame = +1 Query: 11209 LPVLESHDRSKVNVGVVRDLKLD--GKRLRGELVLGQSERAKELAADIADGIVTGISVGY 11382 LP L R +GV ++K D G +RG L++ AK A + G +TG+S+GY Sbjct: 57 LPALLWQHRMDEPIGVYTEMKEDDVGLYVRGRLLVDDDPLAKRAHAHMKAGSLTGLSIGY 116 Query: 11383 TISQETRDEKAKRITATRWCPYEVSIVSVPADPSVGIN 11496 + D + +EVS+V+ P++ I+ Sbjct: 117 ILKDWEYDREKGVFLLKEIDLWEVSLVTFPSNDEARIS 154 >ref|NP_817502.1|gp53 Length = 293 Score = 39.3 bits (90), Expect = 0.015 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 7/94 (7%) Frame = +2 Query: 5132 AAVVDA---AKRLLEHGAVSREWYDRAVRAAC----KSVKRPDGKVGIPVFTPGRLRHSV 5290 AA +D A+R HG+ W R + S+KR G+P F P RLRH+ Sbjct: 184 AATIDKYLRARRRAGHGSEGPLWIGLGGRLSYTGMKSSLKRRADDAGVPGFHPHRLRHTS 243 Query: 5291 ATWAIESGADPAAVAAFLGHKSARTTKRFYATHA 5392 A +++G A + A G +S R R+ + A Sbjct: 244 AVRWLKAGGSEAGLMAQAGWQSRRQIDRYIKSAA 277 >ref|NP_076615.1|protease Length = 198 Score = 38.9 bits (89), Expect = 0.020 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 8/115 (6%) Frame = +1 Query: 11155 FDEVLSHARGAVDLSRAPLPVLESHDRSKVNVGVVRD----LKLDGKRLRGELVLGQSE- 11319 F+E+ + VDLS + L H+ SKV +G + L +D K + GE+ + +++ Sbjct: 46 FEEISPESFDNVDLS--DVRALIDHETSKV-LGRTKSGTLTLSVDAKGVYGEIKVNENDT 102 Query: 11320 RAKELAADIADGIVTGISVGYTI---SQETRDEKAKRITATRWCPYEVSIVSVPA 11475 A L + + G V S G+ I + ETRD+ + + T +EVS+V+ PA Sbjct: 103 EAMNLYSRVQRGDVDQCSFGFNILDEAMETRDDGSYKFTIKAIELFEVSVVTFPA 157 >ref|YP_024889.1|putative primase Length = 919 Score = 38.1 bits (87), Expect = 0.034 Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 3/113 (2%) Frame = +1 Query: 6604 NDPKTWRPFRDA---LAFLKRTYDDPQAGVGFVFQRKLGVVFIDFDHCLDTSGXXXXXXX 6774 +D W F A L L++ D +GF G F+D D C+ +G Sbjct: 47 SDSSNWMTFSQARVTLTSLRQRGDGFTYTLGFWLTADGGYWFLDIDKCMP-NGQLSPLAQ 105 Query: 6775 XXXXXFRGTYVERSLSGRGLHVLALGSVPHAFSKLVPPAAAGDEHIEVYSEKR 6933 F G E S SG+GLH+ G VP K A ++E Y++KR Sbjct: 106 TLFNMFPGAAYEWSSSGQGLHLFGRGVVPDHRRK-----DAHGFNLEFYTDKR 153 >ref|NP_859328.1|hypothetical protein Length = 444 Score = 37.0 bits (84), Expect = 0.076 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +2 Query: 5279 RHSVATWAIESGADPAAVAAFLGHKSARTTKRFY 5380 RH+ A WA+ SGA+P +A+ +GH SA Y Sbjct: 370 RHTYACWALSSGANPTFIASQMGHSSASMVYNVY 403 >ref|NP_612960.1|hypothetical protein Length = 444 Score = 37.0 bits (84), Expect = 0.076 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +2 Query: 5279 RHSVATWAIESGADPAAVAAFLGHKSARTTKRFY 5380 RH+ A WA+ SGA+P +A+ +GH SA Y Sbjct: 370 RHTYACWALSSGANPTFIASQMGHSSASMVYNVY 403 >ref|NP_859162.1|hypothetical protein Length = 444 Score = 37.0 bits (84), Expect = 0.076 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +2 Query: 5279 RHSVATWAIESGADPAAVAAFLGHKSARTTKRFY 5380 RH+ A WA+ SGA+P +A+ +GH SA Y Sbjct: 370 RHTYACWALSSGANPTFIASQMGHSSASMVYNVY 403 >ref|NP_037665.1|head maturation protease Length = 225 Score = 37.0 bits (84), Expect = 0.076 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 7/104 (6%) Frame = +1 Query: 11224 SHDRSKVNVGVVRDLKLDGKRL--RGELVLGQSERAKELAADIADGIVTGISVGYTISQE 11397 +H ++ VG L D K L RG+L G S A +L A + G V G+SVG+++S++ Sbjct: 64 NHRTWELPVGKWDSLAEDEKGLYVRGQLTPGHSGAA-DLKAAMQHGTVEGMSVGFSVSKD 122 Query: 11398 T-----RDEKAKRITATRWCPYEVSIVSVPADPSVGINRSASMD 11514 K I A R E+S+ + PA+ GI S+D Sbjct: 123 DYTIIPTGRIFKNIQALR----EISVCTFPANEQAGIAAMKSVD 162 >ref|NP_050500.1|integrase Length = 444 Score = 37.0 bits (84), Expect = 0.076 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +2 Query: 5279 RHSVATWAIESGADPAAVAAFLGHKSARTTKRFY 5380 RH+ A WA+ SGA+P +A+ +GH SA Y Sbjct: 370 RHTYACWALSSGANPTFIASQMGHSSASMVYNVY 403 >ref|NP_049461.1|integrase Length = 444 Score = 37.0 bits (84), Expect = 0.076 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +2 Query: 5279 RHSVATWAIESGADPAAVAAFLGHKSARTTKRFY 5380 RH+ A WA+ SGA+P +A+ +GH SA Y Sbjct: 370 RHTYACWALSSGANPTFIASQMGHSSASMVYNVY 403 >ref|NP_050964.1|hypothetical protein Length = 752 Score = 37.0 bits (84), Expect = 0.076 Identities = 79/367 (21%), Positives = 136/367 (37%), Gaps = 33/367 (8%) Frame = +1 Query: 6868 FSKLVPPAAAGDEHIEVYSEKRYAAITGDTYDGAPAELLDKQKELDALLRALAPKATVAA 7047 F L A D + S +A G Y+ ++D L + + A V Sbjct: 154 FEWLSDLAIKWDSSVYEPSHMIFAPHEGAKYESFEGTVIDVDTLLASDNTPVIEHADVPK 213 Query: 7048 TRSDEHVPL------SAQEVDKIRSAL---DAIDPDVGHDEWLRVGMALHF----GFEGS 7188 T D+ L + Q + +RSAL ++ + W+ +G L + FE Sbjct: 214 TADDDLTRLVDLQNINDQTFEDLRSALWYPKILNRAENYPSWVDMGNRLAWFKDTRFEDE 273 Query: 7189 AEGLALWNEWSAGGGKYKNGEPADRWRSFKRNGVTLGSLFHFAKKHGWRPEPTAEQDFGP 7368 A+ +W +WS+ K +W + + ++F A+K GW P AE+ Sbjct: 274 AK--TMWLDWSSAAAKGDIEAAEAKWAELRADRTGYQAIFSLAQKAGW-VNPGAER-LKT 329 Query: 7369 ALARDEAFVSLDD--LNSQFFVIEESGRHFVACESYDHARRRRMLKRF-----SFAEFKA 7527 A+A +AF L D NS++ + + + D+A + M F F F+ Sbjct: 330 AVATVDAFDDLTDPTENSKWPTFKRNKTSGQIEATIDNAAKAVMCANFVGVEIRFDTFRD 389 Query: 7528 RYLGRTVLNEKGR----------QIPMAKSWLEWPGRRQYLGGVVFVPGRSLPSDVLNLW 7677 + V ++ + +I M K G R+ + VV + P D W Sbjct: 390 EIMFAPVGTKEWQTFTDADYSRLRITMEKRGFRAVG-RELIRDVVLLAAVENPFDSAMEW 448 Query: 7678 ---GGWAVAPKPGDWSLLREHIHDVICSKNDELDAYVMGWLRRLVQRPDEPGEVVLVLRG 7848 W P+ + H+ + + Y+ L V +P ++V +L G Sbjct: 449 LKSLEWDGIPRIE--TFYHTHLGTEDTAYTRAVSRYMWTALAGRVLKPGIKADMVPILVG 506 Query: 7849 VQGAGKS 7869 QG+GKS Sbjct: 507 AQGSGKS 513 >ref|NP_818386.1|gp85 Length = 424 Score = 36.6 bits (83), Expect = 0.100 Identities = 20/42 (47%), Positives = 24/42 (57%) Frame = +2 Query: 5255 PVFTPGRLRHSVATWAIESGADPAAVAAFLGHKSARTTKRFY 5380 P TP LRH+ A+ AI SGA+ AV LGH +A T Y Sbjct: 356 PRITPHDLRHTCASLAISSGANVKAVQNLLGHATAVMTLDLY 397 >ref|NP_037700.1|protease Length = 225 Score = 36.2 bits (82), Expect = 0.13 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 7/104 (6%) Frame = +1 Query: 11224 SHDRSKVNVGVVRDLKLDGKRL--RGELVLGQSERAKELAADIADGIVTGISVGYTISQE 11397 +H ++ VG L D K L RG+L G S A +L A + G V G+SVG++++++ Sbjct: 64 NHKTWELPVGKWDSLAEDEKGLYVRGQLTPGHSGAA-DLKAAMQHGTVEGMSVGFSVAKD 122 Query: 11398 T-----RDEKAKRITATRWCPYEVSIVSVPADPSVGINRSASMD 11514 K I A R E+S+ + PA+ GI S+D Sbjct: 123 DYTIIPTGRIFKNIQALR----EISVCTFPANEQAGIAAMKSVD 162 >ref|NP_061531.1|integrase Length = 369 Score = 35.4 bits (80), Expect = 0.22 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = +2 Query: 5207 RAACKSVKRPDGKVGIPVFTPGRLRHSVATWAIESGADPAAVAAFLGHKSARTTKRF 5377 + AC++ K D FT LRH+ A W + +G A V LGH + T+R+ Sbjct: 275 KQACQAAKIAD-------FTIHDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTERY 324 >ref|NP_612851.1|putative integrase Length = 349 Score = 35.4 bits (80), Expect = 0.22 Identities = 20/53 (37%), Positives = 28/53 (52%) Frame = +2 Query: 5225 VKRPDGKVGIPVFTPGRLRHSVATWAIESGADPAAVAAFLGHKSARTTKRFYA 5383 +KR K IP+ LRHS A+ IE G P ++ LGH+ +TT Y+ Sbjct: 279 MKRVCKKSNIPIIRIHDLRHSHASLLIELGFTPLLISERLGHEKVQTTLDTYS 331 >ref|NP_543053.1|putative integrase Length = 437 Score = 35.0 bits (79), Expect = 0.29 Identities = 13/34 (38%), Positives = 23/34 (67%) Frame = +2 Query: 5279 RHSVATWAIESGADPAAVAAFLGHKSARTTKRFY 5380 RH+ A W++ +GA+P+ +A+ +GH SA+ Y Sbjct: 362 RHTYACWSLSAGANPSFIASQMGHASAQMVFNVY 395 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,179,605 Number of Sequences: 14420 Number of extensions: 1529819 Number of successful extensions: 6155 Number of sequences better than 0.5: 33 Number of HSP's better than 0.5 without gapping: 3802 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6127 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 9207268664 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig48 (26,235 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 45 4e-04 ref|NP_958267.1|hypothetical protein 40 0.015 >ref|NP_046572.1|ABC transporter Length = 705 Score = 45.1 bits (105), Expect = 4e-04 Identities = 20/44 (45%), Positives = 32/44 (72%) Frame = -1 Query: 24885 LSGGMYKKLALACALLHEPEVLLLDEPTNGVDPVSRRELWALLH 24754 LS G ++LALA A+LH+P+VL+LDE + +DP + + ++ LH Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLH 662 Score = 43.5 bits (101), Expect = 0.001 Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 6/180 (3%) Frame = -3 Query: 24307 VDRVSFEVERGEIFGYLGANGAGKSTTIRMLTGLLAPSSGTGRVAGHDLAA-DPEGVKAS 24131 V+ ++ ++R + +G +G GKST + L+ L + + G D+ D ++ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 24130 IGYMSQKFSLYLDLPVRENLIFFGGAYG---LWGKALERRADEVLALADLRDAGDVITG- 23963 I Y+ + L+ ++ENL G + + + + E + D + + + Sbjct: 559 IVYIDENPFLFKGT-IKENLCM-GEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG 616 Query: 23962 -DLPGGVRQRLALASAILQRPQVVFLDEPTAGVDPVARRTFWRVIRDLAREGTTVFVTTH 23786 +L G +QRLALA AIL +PQV+ LDE + +DP + + L R + + TH Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYET---LHRMDCLIILITH 673 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 39.7 bits (91), Expect = 0.015 Identities = 45/132 (34%), Positives = 56/132 (42%) Frame = -2 Query: 17000 EDAGEQRRGEDRDLRRAEVGRVRERLSGDEERHGEADAGERPGAGELPPRVGRRLHRQPG 16821 ED RR D RR RV+ RL R R GA + RV R PG Sbjct: 155 EDRRRTRRRRRPDPRR----RVQPRLGVGVHR--------RRGARRVGRRVRVRARPGPG 202 Query: 16820 AHRQPRRQEHAERLPGHQAEHDGRHQPPAPVQRARHPGHAGVREREHRQHRVARPGVQGP 16641 A R+PRR+ H EH +P R RH A +R R HR+HR + P + P Sbjct: 203 AARRPRRRPH--------PEHPRAVRPRRRTGR-RHRRRASLRPR-HRRHR-STPPMNTP 251 Query: 16640 QQLARGRLDSVV 16605 LA L +V+ Sbjct: 252 LTLAGLALTAVI 263 Score = 36.2 bits (82), Expect = 0.17 Identities = 45/152 (29%), Positives = 50/152 (32%), Gaps = 15/152 (9%) Frame = -1 Query: 1785 PELA-DPRPVDHAAAPGQLEQAPRGGGVAPA---RVARPDRGDRLLGAPEQRVHEGGLPR 1618 PE A DP P H AAPG AP APA R DRG L R +P Sbjct: 85 PECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRPRAPECDRGAHHLRTRAPRTRTRAVPL 144 Query: 1617 AGGA-----------DEHRRPPRPHQAGQPVQALPAXXXXXXXXXXXXXXXXXXXXXXGV 1471 GA RR P P + QP Sbjct: 145 GPGARVRTPVEDRRRTRRRRRPDPRRRVQP------------------------------ 174 Query: 1470 GNQVGLGEDHRGLGAARVHRRERPLQAPRVGA 1375 ++G+G HR GA RV RR R P GA Sbjct: 175 --RLGVGV-HRRRGARRVGRRVRVRARPGPGA 203 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,275,505 Number of Sequences: 14420 Number of extensions: 1382175 Number of successful extensions: 6291 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 3566 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6273 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 12122962072 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig49 (30,746 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 112 3e-24 ref|NP_064745.1|gp7 39 0.031 ref|NP_523316.1|helicase 38 0.052 ref|NP_523315.1|DNA primase 38 0.052 ref|NP_052088.1|helicase 38 0.068 ref|NP_052087.1|DNA primase 38 0.068 ref|NP_542342.1|unknown 37 0.12 ref|NP_542290.1|unknown 36 0.20 ref|NP_040602.1|Tail fiber protein 36 0.26 ref|NP_848279.1|primase 35 0.44 ref|NP_041977.1|helicase 35 0.44 ref|NP_041975.1|DNA primase 35 0.44 >ref|NP_046572.1|ABC transporter Length = 705 Score = 112 bits (279), Expect = 3e-24 Identities = 108/510 (21%), Positives = 221/510 (43%), Gaps = 11/510 (2%) Frame = -1 Query: 2366 LAALPLVIVAVSVVKGFAYFGQFYLIGMVGQRVIADIRKALFDHLLKLSPGFYTRRHSGD 2187 L + L+ +++ +++ F + YLI + +V ++ F+ + KL F+ R G+ Sbjct: 205 LITITLIFISMVLIRCIFDFVRSYLIIKLSYKVDKEMSNVYFNKVTKLPINFFENREDGE 264 Query: 2186 ILQRFXXXXXXXXXXXXXXVPSYVRDGLTVVVMLVNCFVLDWRMSLIAFGAVPATLFPVI 2007 ++ RF V + + +++++ V+ +R + I F + + P++ Sbjct: 265 VISRFNDGIYIKDFFSANFVTAIID-----IILILGLGVILYRTNNILFLTI---ILPIL 316 Query: 2006 RLAKRLKRVTGHAQKTGGELSEMVQEAVS-------GMRVVQAYGMERWESRRFAEANAK 1848 L+ H +K +L E ++ S M V + + +F K Sbjct: 317 LLSCLAILFFDHLKKKNQKLMEDKAKSTSLLINFLKNMTTVYSLNKTSFFLEKFHLTYDK 376 Query: 1847 LVRILRRSYLVRAFSSPLMEIMGAAGLAAAIWWVGGRILAGE---LEAAKFFSFVAAVLL 1677 + S S+ +++ + I WVG R + + L F + +AA LL Sbjct: 377 QLNSTF-SVAKAVISNEILKGLIQNSFTIIILWVGTRQVLNDSMSLGTLLFINTLAAFLL 435 Query: 1676 LYTPVKQLXXXXXXXXXXXXXGDRIFEILDTPSAVPDAGRAVLAPFREAIRYEDVSFSYG 1497 + + ++ R F++++ P F + I+ +++ Sbjct: 436 --SSLDRILSMQSDLQQAHVASIRFFDVVNYPVQQDSNENLTELDFIQNIKTVNLNIGAD 493 Query: 1496 D-RLVLTGFSLEVRRGEVVALVGASGGGKTTVANLLPRFWDPTGGRITVDGVDLREVTLA 1320 R ++ +L + R + V ++G SG GK+T A L + + I ++G+D+ Sbjct: 494 PMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHL 553 Query: 1319 SLRAQLALVTQETVLFNDSIRANIAYGRPEVSQADVEHAARMAQAHEFIRALPQGYDTVV 1140 S+R ++ + + LF +I+ N+ G Q ++E+A M+Q HEFI L + Y + Sbjct: 554 SIRKRIVYIDENPFLFKGTIKENLCMGEI-FDQNEIENACIMSQCHEFICNLDKQYSYKL 612 Query: 1139 GEKGVLLSGGQRQRIAIARAFLKDAPILILDEATSALDAESEREVQRALDSLMAIEGASR 960 E G LS GQ+QR+A+ARA L +LILDE+ S +D ++ + + L + + Sbjct: 613 SENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCL----- 667 Query: 959 RTTLVIAHRLSTIRNADRIVVISGGRVVEA 870 ++I H + ++ +V R++E+ Sbjct: 668 --IILITHNDPSNFKYNKKLVFRNNRIIES 695 >ref|NP_064745.1|gp7 Length = 540 Score = 38.9 bits (89), Expect = 0.031 Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 2/112 (1%) Frame = +1 Query: 18514 TTTAGIAFTTRRYASTIRSAGTPARSAAQAGSNGATCAASRSKPVVRASTNARSYVRSAT 18693 TT A A + A+T SA A SA A ++ A A S + ST S +AT Sbjct: 186 TTQASAASVSATNAAT--SASNAATSATNAAASQAAAATSETNAAASESTVTTSATNAAT 243 Query: 18694 SRCSQARITAVSPPGRMGSHTSAFEATVERRGSST--TSDAPRARAFASSCT 18843 S + A + + + TSA A+ ++T T+ A A + ASS T Sbjct: 244 SEANAATSASTATTQATNAATSASTASTSATNAATSETNAASSASSAASSAT 295 >ref|NP_523316.1|helicase Length = 504 Score = 38.1 bits (87), Expect = 0.052 Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 8/233 (3%) Frame = -1 Query: 1538 REAIRYED-VSFSYGDRLVLTGFSLEVRRGEVVALVGASGGGKTTVANLLPRFWDPTGGR 1362 +EA+ ED V + L +L R GEVV + SG GK+T W G Sbjct: 213 KEAMTSEDAVGLLFDGCQGLNDRTLGARGGEVVMVTSGSGMGKSTFVRQQALAWGKRMG- 271 Query: 1361 ITVDGVDLREVTLASLRAQLALVTQETVLFNDSIRANIAYGRPEVSQADVEHAARMAQAH 1182 + V LA L + Q+ + N+ +R + EV +A E Sbjct: 272 --------KRVGLAMLEESVEDTIQDMMGLNNKVRLRQS---DEVKKAIAEDG------- 313 Query: 1181 EFIRALPQGYDTVVGEKGVLL----SGGQRQRIAIARAFLK---DAPILILDEATSALDA 1023 + YD + G+ L + + R+ A+++ +++LD + + A Sbjct: 314 ----RFDEWYDELFGDDTFHLYDSFAEAEADRLLAKLAYMRTGLGCDVIVLDHISIVVSA 369 Query: 1022 ESEREVQRALDSLMAIEGASRRTTLVIAHRLSTIRNADRIVVISGGRVVEAGD 864 E + ++ +D LM ++T V+ + ++N ++ GR V D Sbjct: 370 SEESDERKMIDRLMTKLKGFAKSTGVVLVVICHLKNPEKGKAHEEGRAVSITD 422 >ref|NP_523315.1|DNA primase Length = 566 Score = 38.1 bits (87), Expect = 0.052 Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 8/233 (3%) Frame = -1 Query: 1538 REAIRYED-VSFSYGDRLVLTGFSLEVRRGEVVALVGASGGGKTTVANLLPRFWDPTGGR 1362 +EA+ ED V + L +L R GEVV + SG GK+T W G Sbjct: 275 KEAMTSEDAVGLLFDGCQGLNDRTLGARGGEVVMVTSGSGMGKSTFVRQQALAWGKRMG- 333 Query: 1361 ITVDGVDLREVTLASLRAQLALVTQETVLFNDSIRANIAYGRPEVSQADVEHAARMAQAH 1182 + V LA L + Q+ + N+ +R + EV +A E Sbjct: 334 --------KRVGLAMLEESVEDTIQDMMGLNNKVRLRQS---DEVKKAIAEDG------- 375 Query: 1181 EFIRALPQGYDTVVGEKGVLL----SGGQRQRIAIARAFLK---DAPILILDEATSALDA 1023 + YD + G+ L + + R+ A+++ +++LD + + A Sbjct: 376 ----RFDEWYDELFGDDTFHLYDSFAEAEADRLLAKLAYMRTGLGCDVIVLDHISIVVSA 431 Query: 1022 ESEREVQRALDSLMAIEGASRRTTLVIAHRLSTIRNADRIVVISGGRVVEAGD 864 E + ++ +D LM ++T V+ + ++N ++ GR V D Sbjct: 432 SEESDERKMIDRLMTKLKGFAKSTGVVLVVICHLKNPEKGKAHEEGRAVSITD 484 >ref|NP_052088.1|helicase Length = 504 Score = 37.7 bits (86), Expect = 0.068 Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 8/233 (3%) Frame = -1 Query: 1538 REAIRYED-VSFSYGDRLVLTGFSLEVRRGEVVALVGASGGGKTTVANLLPRFWDPTGGR 1362 +EA+ ED V + L +L R GEV+ + SG GK+T W G Sbjct: 213 KEAMTSEDAVGLLFDGCQGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQQALAWGKRMG- 271 Query: 1361 ITVDGVDLREVTLASLRAQLALVTQETVLFNDSIRANIAYGRPEVSQADVEHAARMAQAH 1182 + V LA L + Q+ + N+ +R + EV +A E Sbjct: 272 --------KRVGLAMLEESVEDTIQDMMGLNNKVRLRQS---DEVKKAIAEDG------- 313 Query: 1181 EFIRALPQGYDTVVGEKGVLL----SGGQRQRIAIARAFLK---DAPILILDEATSALDA 1023 + YD + G+ L + + R+ A+++ +++LD + + A Sbjct: 314 ----RFDEWYDELFGDDTFHLYDSFAEAEADRLLAKLAYMRTGLGCDVIVLDHISIVVSA 369 Query: 1022 ESEREVQRALDSLMAIEGASRRTTLVIAHRLSTIRNADRIVVISGGRVVEAGD 864 E + ++ +D LM ++T V+ + ++N ++ GR V D Sbjct: 370 SEESDERKMIDRLMTKLKGFAKSTGVVLVVICHLKNPEKGKAHEEGRAVSITD 422 >ref|NP_052087.1|DNA primase Length = 566 Score = 37.7 bits (86), Expect = 0.068 Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 8/233 (3%) Frame = -1 Query: 1538 REAIRYED-VSFSYGDRLVLTGFSLEVRRGEVVALVGASGGGKTTVANLLPRFWDPTGGR 1362 +EA+ ED V + L +L R GEV+ + SG GK+T W G Sbjct: 275 KEAMTSEDAVGLLFDGCQGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQQALAWGKRMG- 333 Query: 1361 ITVDGVDLREVTLASLRAQLALVTQETVLFNDSIRANIAYGRPEVSQADVEHAARMAQAH 1182 + V LA L + Q+ + N+ +R + EV +A E Sbjct: 334 --------KRVGLAMLEESVEDTIQDMMGLNNKVRLRQS---DEVKKAIAEDG------- 375 Query: 1181 EFIRALPQGYDTVVGEKGVLL----SGGQRQRIAIARAFLK---DAPILILDEATSALDA 1023 + YD + G+ L + + R+ A+++ +++LD + + A Sbjct: 376 ----RFDEWYDELFGDDTFHLYDSFAEAEADRLLAKLAYMRTGLGCDVIVLDHISIVVSA 431 Query: 1022 ESEREVQRALDSLMAIEGASRRTTLVIAHRLSTIRNADRIVVISGGRVVEAGD 864 E + ++ +D LM ++T V+ + ++N ++ GR V D Sbjct: 432 SEESDERKMIDRLMTKLKGFAKSTGVVLVVICHLKNPEKGKAHEEGRAVSITD 484 >ref|NP_542342.1|unknown Length = 164 Score = 37.0 bits (84), Expect = 0.12 Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 9/89 (10%) Frame = -2 Query: 2626 IWTRMAPPCAPTFASSASSCRTRD--GSWRPSPAWRCCPSRPRSTSTCWAPRSSSCSPGT 2453 +W P T +S RTRD S R +P R P RS + PR S+ + Sbjct: 3 VWATWMMPTPTTCSSPLPISRTRDCARSSRSAPTGRSAPWSRRSPKS---PRPSA----S 55 Query: 2452 RARWPRWAS-------SSPTRWTSRGCWP 2387 R PRW+S S PTR TS WP Sbjct: 56 RLANPRWSSLARSFPFSPPTRNTSAALWP 84 >ref|NP_542290.1|unknown Length = 610 Score = 36.2 bits (82), Expect = 0.20 Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 4/99 (4%) Frame = +1 Query: 16099 RDDGR----GGDQHEHREQLLAGVVLVLRRQRAAPRARHGERLPDEPGEVVAGHPHVLPD 16266 RD+ R GGD E +L +L+ RRQ R E EVV H H L Sbjct: 419 RDNNRVPVSGGDASEQALAVLLLEILLSRRQDLGARVELDEIGAPLSHEVVGNHEHRLAG 478 Query: 16267 VAEAALEQQEQRDDDGGPRQPPRHVQPEERGPSAQRPGD 16383 +++A+L R +GG R H ERG + R D Sbjct: 479 LSDASL---FHRRCNGGKRLAGAHGMVGERGTALHRAPD 514 >ref|NP_040602.1|Tail fiber protein Length = 401 Score = 35.8 bits (81), Expect = 0.26 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 2/136 (1%) Frame = +1 Query: 18532 AFTTRRYASTIRSAGTPARSAAQAGSNGATCAASRSKPVVRASTNARSYVRSATSRCSQA 18711 A + R AST SAG A S+AQ S+GA A++++ +++ A S +A + A Sbjct: 148 ATDSARAAST--SAGQAA-SSAQEASSGAEAASAKATEAEKSAAAAESSKNAAATSAGAA 204 Query: 18712 RITAVSPPGRMGSHTSAFEATVERRGSSTTS--DAPRARAFASSCTWPLCAFSPRCEPNS 18885 + + + S ++ + + TS DA ++ A S + + R ++ Sbjct: 205 KTSETNAAASQQSAATSASTAATKASEAATSARDAVASKEAAKSSETNASSSAGRAASSA 264 Query: 18886 TTARAFSRSMGSGETS 18933 T A +R+ + ET+ Sbjct: 265 TAAENSARAAKTSETN 280 >ref|NP_848279.1|primase Length = 566 Score = 35.0 bits (79), Expect = 0.44 Identities = 52/251 (20%), Positives = 97/251 (38%), Gaps = 14/251 (5%) Frame = -1 Query: 1574 VPDAGRAVLAPFREAIRY-----EDVSFSYGDRLVLTGFSLEVRRGEVVALVGASGGGKT 1410 +PD + L+ RE IR E V + + +L R GEV+ + SG GK+ Sbjct: 261 IPDGVVSALS-LRERIREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKS 319 Query: 1409 TVANLLPRFWDPTGGRITVDGVDLREVTLASLRAQLALVTQETVLFNDSIRANIAYGRPE 1230 T W G ++V LA L + ++ + ++ +R Sbjct: 320 TFVRQQALQWGTAMG---------KKVGLAMLEESVEETAEDLIGLHNRVR--------- 361 Query: 1229 VSQADVEHAARMAQAHEFIR--ALPQGYDTVVGEKGVLL----SGGQRQRIAIARAFLKD 1068 + Q+D + E I Q +D + G L + + R+ A+++ Sbjct: 362 LRQSD-------SLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRS 414 Query: 1067 ---APILILDEATSALDAESEREVQRALDSLMAIEGASRRTTLVIAHRLSTIRNADRIVV 897 ++ILD + + A E + ++ +D+LM ++T V+ + ++N D+ Sbjct: 415 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKA 474 Query: 896 ISGGRVVEAGD 864 GR V D Sbjct: 475 HEEGRPVSITD 485 >ref|NP_041977.1|helicase Length = 503 Score = 35.0 bits (79), Expect = 0.44 Identities = 52/251 (20%), Positives = 97/251 (38%), Gaps = 14/251 (5%) Frame = -1 Query: 1574 VPDAGRAVLAPFREAIRY-----EDVSFSYGDRLVLTGFSLEVRRGEVVALVGASGGGKT 1410 +PD + L+ RE IR E V + + +L R GEV+ + SG GK+ Sbjct: 198 IPDGVVSALS-LRERIREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKS 256 Query: 1409 TVANLLPRFWDPTGGRITVDGVDLREVTLASLRAQLALVTQETVLFNDSIRANIAYGRPE 1230 T W G ++V LA L + ++ + ++ +R Sbjct: 257 TFVRQQALQWGTAMG---------KKVGLAMLEESVEETAEDLIGLHNRVR--------- 298 Query: 1229 VSQADVEHAARMAQAHEFIR--ALPQGYDTVVGEKGVLL----SGGQRQRIAIARAFLKD 1068 + Q+D + E I Q +D + G L + + R+ A+++ Sbjct: 299 LRQSD-------SLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRS 351 Query: 1067 ---APILILDEATSALDAESEREVQRALDSLMAIEGASRRTTLVIAHRLSTIRNADRIVV 897 ++ILD + + A E + ++ +D+LM ++T V+ + ++N D+ Sbjct: 352 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKA 411 Query: 896 ISGGRVVEAGD 864 GR V D Sbjct: 412 HEEGRPVSITD 422 >ref|NP_041975.1|DNA primase Length = 566 Score = 35.0 bits (79), Expect = 0.44 Identities = 52/251 (20%), Positives = 97/251 (38%), Gaps = 14/251 (5%) Frame = -1 Query: 1574 VPDAGRAVLAPFREAIRY-----EDVSFSYGDRLVLTGFSLEVRRGEVVALVGASGGGKT 1410 +PD + L+ RE IR E V + + +L R GEV+ + SG GK+ Sbjct: 261 IPDGVVSALS-LRERIREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKS 319 Query: 1409 TVANLLPRFWDPTGGRITVDGVDLREVTLASLRAQLALVTQETVLFNDSIRANIAYGRPE 1230 T W G ++V LA L + ++ + ++ +R Sbjct: 320 TFVRQQALQWGTAMG---------KKVGLAMLEESVEETAEDLIGLHNRVR--------- 361 Query: 1229 VSQADVEHAARMAQAHEFIR--ALPQGYDTVVGEKGVLL----SGGQRQRIAIARAFLKD 1068 + Q+D + E I Q +D + G L + + R+ A+++ Sbjct: 362 LRQSD-------SLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRS 414 Query: 1067 ---APILILDEATSALDAESEREVQRALDSLMAIEGASRRTTLVIAHRLSTIRNADRIVV 897 ++ILD + + A E + ++ +D+LM ++T V+ + ++N D+ Sbjct: 415 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKA 474 Query: 896 ISGGRVVEAGD 864 GR V D Sbjct: 475 HEEGRPVSITD 485 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,242,075 Number of Sequences: 14420 Number of extensions: 1574654 Number of successful extensions: 6764 Number of sequences better than 0.5: 12 Number of HSP's better than 0.5 without gapping: 3983 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6745 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 14087660135 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig50 (27,013 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_852574.1|Collagen triple helix repeat protein 36 0.18 >ref|NP_852574.1|Collagen triple helix repeat protein Length = 536 Score = 36.2 bits (82), Expect = 0.18 Identities = 25/68 (36%), Positives = 31/68 (45%) Frame = -3 Query: 21479 LSAGSTPAACPPGAPPRQ*PSITFGPRASTSPTPLASGSAMRSSIPGSAGPTLPAGASPP 21300 L G T + P G P+ GP ST PT +GS + + G GPT P G + P Sbjct: 27 LPTGPTGSTGPTGPTGSTGPT---GPTGSTGPTG-PTGSTGLTGLTGPTGPTGPTGPTGP 82 Query: 21299 GFETASTG 21276 T STG Sbjct: 83 TGPTGSTG 90 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,909,814 Number of Sequences: 14420 Number of extensions: 1433549 Number of successful extensions: 6083 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 3766 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6057 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 12486707111 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig51 (24,455 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_040602.1|Tail fiber protein 42 0.004 ref|NP_064745.1|gp7 41 0.005 ref|NP_817742.1|gp65 35 0.47 >ref|NP_040602.1|Tail fiber protein Length = 401 Score = 41.6 bits (96), Expect = 0.004 Identities = 53/255 (20%), Positives = 93/255 (36%) Frame = -2 Query: 5092 SSGATTRLARNSNAAAAKVRARCRSTQSSVRAYTRSFASKAARIRRATGCSRRSWPGTWA 4913 S+ + A +++A+AA+V A S RA + S A+ + A+ + Sbjct: 123 STADAKKSAGDASASAAQVAALVTDATDSARAASTSAGQAASSAQEASSGAE-------- 174 Query: 4912 RTNRAESIGSSVNATNSEMSTATVMVSPNWRKNCPVMPCMNATGTNTATRVKVVAITASA 4733 +S AT +E S A S N + TN A + A +AS Sbjct: 175 --------AASAKATEAEKSAAAAESSKNAAATSA--GAAKTSETNAAASQQSAATSAST 224 Query: 4732 ISCVPRLAATGGGSPASSRRVMLSRTTTASSMSRPIASERPSRVSWFSEKPIQYITNSVP 4553 + AAT +S+ S T ASS + AS S + + Sbjct: 225 AATKASEAATSARDAVASKEAAKSSETNASSSAGRAAS---------SATAAENSARAAK 275 Query: 4552 TTEVGRASAEMTVPRTSSRNSRMISTAIAPPKKMATHTSCALASMITDWSTRTCARKPSS 4373 T+E S+E R++S + + A +T + A S ++ +++ A + Sbjct: 276 TSETNARSSETAAERSASAAADAKTAAAGSASTASTKATEAAGSAVSASQSKSAAEAAAI 335 Query: 4372 ACSSGSSRFTSFATA 4328 + + R A+A Sbjct: 336 RAKNSAKRAEDIASA 350 >ref|NP_064745.1|gp7 Length = 540 Score = 41.2 bits (95), Expect = 0.005 Identities = 57/278 (20%), Positives = 106/278 (38%), Gaps = 6/278 (2%) Frame = -2 Query: 5137 TMSWLRSSLGANSDPSSGATTRLARNSNAAAAKVRARCRSTQSSVRAYTRSFASKAARIR 4958 T + +++ L N + GAT L ++ A A+ + + A ++ A + Sbjct: 41 TPNAMQADLDLNGNNLIGATGLLINGTDYLADVEAAKAAALVAQAAAELAENNAETAEVN 100 Query: 4957 RATGCSRRSWPGTWARTNRAESIGSSVNATNSEMSTATVMVSPNWRKNCPVMPCMNATGT 4778 + T A T+ + S A+ S ++AT + T Sbjct: 101 AEASETAAGLSATAAATSATNAGASETAASASATASAT-------------------SAT 141 Query: 4777 NTATRVKVVAITASAISCVPRLAATGGGSPASSRRVMLSRTTTASSMSRPIASERPSRVS 4598 N+AT A +ASA + AAT + A+S +TA++ + AS + + Sbjct: 142 NSATSASQAATSASAAAVSEGNAATSETNAANSATSASGSASTATTQA-SAASVSATNAA 200 Query: 4597 WFSEKPIQYITN------SVPTTEVGRASAEMTVPRTSSRNSRMISTAIAPPKKMATHTS 4436 + TN + T+E A++E TV +++ + + A T + Sbjct: 201 TSASNAATSATNAAASQAAAATSETNAAASESTVTTSATNAATSEANAATSASTATTQAT 260 Query: 4435 CALASMITDWSTRTCARKPSSACSSGSSRFTSFATAAE 4322 A S T ++ T A + +S +S S AT+A+ Sbjct: 261 NAATSASTASTSATNAATSETNAASSASSAASSATSAQ 298 >ref|NP_817742.1|gp65 Length = 513 Score = 34.7 bits (78), Expect = 0.47 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = +1 Query: 3280 VAGADGKARA---LPVRLLAEEGETAVIVPEGGAWPEGLRVVTDP 3405 V G DGKA A P R + ET ++VP GG W DP Sbjct: 291 VEGRDGKAAAPVDQPTRTMTTRNETGLLVPTGGTWRTDATSTDDP 335 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,417,933 Number of Sequences: 14420 Number of extensions: 1564112 Number of successful extensions: 5572 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 3622 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5567 length of database: 3,019,461 effective HSP length: 111 effective length of database: 1,418,841 effective search space used: 11407481640 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig52 (30,592 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818503.1|gp203 166 1e-40 ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family 60 2e-08 ref|YP_024677.1|gp04 54 1e-06 ref|NP_665958.1|putative glutaminase 46 2e-04 ref|NP_852553.1|hypothetical protein 42 0.005 >ref|NP_818503.1|gp203 Length = 442 Score = 166 bits (420), Expect = 1e-40 Identities = 82/204 (40%), Positives = 129/204 (63%) Frame = +1 Query: 2356 IVATLAQHGVDGTIKHIRPGPVVTLYEFSPVAGVKLARIENLDKELTMALSATRIRIIAP 2535 I++ L + ++ + GP VT YE + GV++ ++ L +L AL+ +R++AP Sbjct: 13 IISALREFDIEAKVTGRTDGPSVTRYEITLGPGVRIQKVAQLQSQLAYALATESVRVVAP 72 Query: 2536 IPGKGVVGIEVPNRDRATVWLRDILESESFASAGGFLPLGLGKNIEGIPYCVDLQRMPHL 2715 IPGK VGIE+P +R TV L+ I+ + L + +GK++EG ++L +MPHL Sbjct: 73 IPGKTAVGIELPRPERQTVRLQHIVPEDDHP-----LTVAVGKDVEGKDISLNLAKMPHL 127 Query: 2716 LIAGTTGSGKSVGLNTMILSMLFRQTPAEVRMIMVDPKMTELSTYEDIPHLLLPVVTDPQ 2895 L+AG TGSGKS +N+M++S+L+R TP V++IM+DPK EL+ Y IPHLL PVVT+ Sbjct: 128 LVAGATGSGKSSFINSMLVSLLYRATPDRVKLIMIDPKCVELTPYNGIPHLLQPVVTEAD 187 Query: 2896 KAARALQWAVDEMERRTQILADTG 2967 +A + L+W EM+ R + + + G Sbjct: 188 EAVKTLRWLTVEMDDRYRQMQEAG 211 Score = 129 bits (324), Expect = 2e-29 Identities = 71/128 (55%), Positives = 92/128 (71%), Gaps = 2/128 (1%) Frame = +1 Query: 3259 LPYIVVVIDELADLMMTA-PREVEISLARLAQKARATGIHLIVATQRPSTDVVTGMIKNN 3435 LPYIVVV+DELADLMM +EVE ++ R+AQKARA GIHL++ATQRPS DVVTG+IK+N Sbjct: 220 LPYIVVVVDELADLMMGGYKKEVEANIVRIAQKARAAGIHLVLATQRPSVDVVTGLIKSN 279 Query: 3436 FPARITFRLASRHDSQTIINGPGAETLLGDGDMLVLTATA-PVTRVQGAFVSEEELHRVV 3612 P+R++F AS DS+ I++ GAE L+G GD L L A R+QGAFVS+ E+ V Sbjct: 280 VPSRLSFATASLTDSRVILDEGGAEQLMGMGDGLFLPVGARSAIRIQGAFVSDGEIEAAV 339 Query: 3613 GFLKEQGR 3636 ++ R Sbjct: 340 NNVRVTAR 347 >ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family Length = 92 Score = 59.7 bits (143), Expect = 2e-08 Identities = 35/92 (38%), Positives = 47/92 (51%) Frame = -1 Query: 12007 MTQAQFFQAVAEGSQVSKXXXXXXXXXXXXXVTKRLKAEGKIPLGGLGAVKLVDRKARIG 11828 M + + VAE VSK +++ LK+ K+ + G G ++ +R AR G Sbjct: 1 MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60 Query: 11827 RNPATGEQIKIPARTAIKLTPAKALKDIFNKK 11732 RNP TGE+I IPA A PAKALKD K Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALKDAVKAK 92 >ref|YP_024677.1|gp04 Length = 90 Score = 53.5 bits (127), Expect = 1e-06 Identities = 32/87 (36%), Positives = 42/87 (48%) Frame = -1 Query: 12007 MTQAQFFQAVAEGSQVSKXXXXXXXXXXXXXVTKRLKAEGKIPLGGLGAVKLVDRKARIG 11828 M ++ VA + ++K +TK L+ + L G G + R AR G Sbjct: 1 MNKSDLINHVAAETGMTKTDSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTG 60 Query: 11827 RNPATGEQIKIPARTAIKLTPAKALKD 11747 RNPATGE+IKIPA A K K LKD Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKD 87 >ref|NP_665958.1|putative glutaminase Length = 191 Score = 46.2 bits (108), Expect = 2e-04 Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 3/87 (3%) Frame = -2 Query: 16413 QHRGQESAGI-VSSDGETLHTHRDMGLVADIFDAGVLSTLKGGAAIGHVRYSTTGASHLK 16237 Q G S G+ V+ DGE HR+ G+ A DA V + + A+GH R++T G L+ Sbjct: 25 QRSGGHSWGVAVAVDGEL---HRERGVGAMPIDA-VDALPEADVALGHTRFATRGEISLR 80 Query: 16236 NAQPLAVQYAGG-PVA-LAHNGNLVNA 16162 NA P V+ G PVA LAHNG ++A Sbjct: 81 NAHPFEVRDRDGEPVAMLAHNGTWLSA 107 >ref|NP_852553.1|hypothetical protein Length = 264 Score = 41.6 bits (96), Expect = 0.005 Identities = 26/92 (28%), Positives = 47/92 (51%) Frame = +1 Query: 3319 EVEISLARLAQKARATGIHLIVATQRPSTDVVTGMIKNNFPARITFRLASRHDSQTIING 3498 E + L+ +A + G LI+ATQ P+ + ++K A++ FRL + S+ +++ Sbjct: 142 ECQYMLSYIATVSGGLGFRLILATQYPTVTSIPSVVKQMSDAKLGFRLPTYKASEVVLDE 201 Query: 3499 PGAETLLGDGDMLVLTATAPVTRVQGAFVSEE 3594 G ETL + T +T +Q F+S+E Sbjct: 202 SGLETLPSLPGRAIY-KTDRLTELQVPFISDE 232 Score = 40.4 bits (93), Expect = 0.010 Identities = 26/110 (23%), Positives = 57/110 (51%), Gaps = 2/110 (1%) Frame = +1 Query: 2656 LGKNIEGIPYCVDLQRMPHLLIAGTTGSGKSVGLNTMILSMLFRQTPAEVRMIMVD--PK 2829 +G+++E + Y D + PH+++ G T GK+V + ++L+ L P + ++D K Sbjct: 1 MGQSLEKLIYH-DFDKTPHMVLGGLTRMGKTVFMK-VLLTTLIEANPENAHVYLIDLKEK 58 Query: 2830 MTELSTYEDIPHLLLPVVTDPQKAARALQWAVDEMERRTQILADTGSKDL 2979 E S + + ++ V +KA L+ + ++E R + + + G K++ Sbjct: 59 GLEFSEFSGLKQ-VVEVSDSVEKAHHVLKQIMKKIEERGKFMKENGYKNI 107 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,749,331 Number of Sequences: 14420 Number of extensions: 1495842 Number of successful extensions: 6307 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 3721 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6288 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 14015380083 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig53 (34,942 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,262,797 Number of Sequences: 14420 Number of extensions: 2080662 Number of successful extensions: 9052 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 4785 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9037 length of database: 3,019,461 effective HSP length: 114 effective length of database: 1,375,581 effective search space used: 15863200092 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig54 (36,462 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_040813.1|integrase 52 3e-06 ref|NP_878228.1|Int 51 7e-06 ref|NP_839878.1|Int 51 7e-06 ref|NP_536807.1|integrase 50 2e-05 ref|NP_043466.1|integrase 50 2e-05 ref|NP_818239.1|gp188 48 6e-05 ref|NP_052278.1|Int 47 1e-04 ref|NP_818251.1|gp200 47 2e-04 ref|NP_438114.1|integrase-like protein 46 3e-04 ref|NP_795541.1|putative integrase 46 3e-04 ref|NP_958084.1|gp27 46 3e-04 ref|NP_536628.1|Int 45 5e-04 ref|NP_046786.1|Int 44 0.001 ref|NP_076696.1|integrase 44 0.001 ref|NP_076752.1|integrase 42 0.003 ref|NP_061531.1|integrase 40 0.012 ref|NP_510895.1|similar to phage phi 11 integrase 40 0.012 ref|NP_795660.1|putative integrase 40 0.016 ref|NP_663635.1|putative integrase 40 0.016 ref|NP_076635.1|integrase 40 0.016 ref|NP_061591.2|integrase 40 0.021 ref|NP_803254.1|integrase 40 0.021 ref|NP_795489.1|putative integrase 39 0.028 ref|NP_818386.1|gp85 39 0.047 ref|YP_006556.1|Ppp 39 0.047 ref|NP_665953.1|putative site specific recombinase Int1 38 0.080 ref|NP_695079.1|putative integrase 38 0.080 ref|NP_049990.1|integrase 38 0.080 ref|NP_624303.1|integrase fragment 38 0.080 ref|NP_599071.1|replication protein 37 0.11 ref|NP_945240.1|integrase 37 0.11 ref|NP_116524.1|integrase 37 0.18 ref|NP_108680.1|integrase 37 0.18 ref|NP_695029.1|Integrase 37 0.18 ref|NP_996675.1|integrase 37 0.18 ref|NP_076573.1|integrase 37 0.18 ref|NP_795605.1|putative phage integrase 36 0.23 ref|NP_795429.1|putative integrase 36 0.23 ref|NP_075464.1|integrase 36 0.23 ref|NP_803307.1|integrase 36 0.23 ref|NP_058467.1|integrase 36 0.23 ref|NP_817502.1|gp53 36 0.23 ref|YP_115515.1|integrase 36 0.23 ref|YP_006863.1|putative serine 36 0.31 ref|NP_818023.1|gp50 35 0.40 ref|NP_817384.1|gp46 35 0.40 ref|NP_958267.1|hypothetical protein 35 0.40 >ref|NP_040813.1|integrase Length = 289 Score = 52.4 bits (124), Expect = 3e-06 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 6/165 (3%) Frame = +2 Query: 30416 RAFLELLYGSGLRVSEXXXXXXXXXXXXXXXVRVL-GKRNKERIVPFGAPAAEALRRYLD 30592 ++F+ LL SGLRVSE +RVL K K+R PF + + + ++ ++ Sbjct: 132 KSFIRLLLDSGLRVSEALNIKISDMDFKNKVIRVLSSKTRKQRYAPFSSFSLKYIKELIE 191 Query: 30593 GARPVLXXXXXXXXXXXXVFLNFRGGRLTSRSVARRLDGWVLASGLPRH-----VHPHVL 30757 +F NF R T+++ D + L +H +H H Sbjct: 192 -----------VNPKRDYLFYNFIKDRQTNKN-----DIKLFYKRLKKHLNLERIHTHRF 235 Query: 30758 RHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDWKRLAAVY 30892 R FA+ L+ NG ++ +Q++ H+ + TT +Y + KR Y Sbjct: 236 RKTFASILIENGLNIDDLQKIFDHSRIETTIKYVQHNEKRALQEY 280 >ref|NP_878228.1|Int Length = 326 Score = 51.2 bits (121), Expect = 7e-06 Identities = 20/46 (43%), Positives = 31/46 (67%) Frame = +2 Query: 30728 LPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHL 30865 +P + H+LRH FA+H + NG ++ +Q++LGHAS+ T Y HL Sbjct: 261 IPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >ref|NP_839878.1|Int Length = 326 Score = 51.2 bits (121), Expect = 7e-06 Identities = 20/46 (43%), Positives = 31/46 (67%) Frame = +2 Query: 30728 LPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHL 30865 +P + H+LRH FA+H + NG ++ +Q++LGHAS+ T Y HL Sbjct: 261 IPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >ref|NP_536807.1|integrase Length = 337 Score = 49.7 bits (117), Expect = 2e-05 Identities = 20/45 (44%), Positives = 31/45 (68%) Frame = +2 Query: 30728 LPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH 30862 LP+ HVLRH FA+H + NG ++ ++E+LGH+++ T RY H Sbjct: 273 LPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAH 317 >ref|NP_043466.1|integrase Length = 337 Score = 49.7 bits (117), Expect = 2e-05 Identities = 20/45 (44%), Positives = 31/45 (68%) Frame = +2 Query: 30728 LPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH 30862 LP+ HVLRH FA+H + NG ++ ++E+LGH+++ T RY H Sbjct: 273 LPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAH 317 >ref|NP_818239.1|gp188 Length = 318 Score = 48.1 bits (113), Expect = 6e-05 Identities = 26/78 (33%), Positives = 37/78 (47%) Frame = +2 Query: 33716 IMGESGVVPPPEGYLRAVRELTRKKGVLLCLDEVQTGMGRTGKFWAHEWEGITPDLMSSA 33895 ++ G + PE L V T K G + DE TG GR G+ W H+ G TPD + Sbjct: 112 LIDREGRLVAPEVVLDEVDRAT-KSGRTVVADESATGFGRLGRIWGHQAYGFTPDAIIFG 170 Query: 33896 KALGGGFPIGAMLATEEV 33949 GGG +G ++ E+ Sbjct: 171 GPAGGGLTLGGVIGPAEL 188 >ref|NP_052278.1|Int Length = 336 Score = 47.0 bits (110), Expect = 1e-04 Identities = 20/45 (44%), Positives = 27/45 (60%) Frame = +2 Query: 30728 LPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH 30862 LP HVLRH FA+H + NG ++ +Q +LGH + T RY H Sbjct: 270 LPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAH 314 >ref|NP_818251.1|gp200 Length = 113 Score = 46.6 bits (109), Expect = 2e-04 Identities = 22/49 (44%), Positives = 31/49 (63%) Frame = +1 Query: 2497 IDTYRSSGAGGQKVNKTDSAVRMTHLPTGIVVAVQNERSQQKNRNVAWK 2643 ++T R G GGQ N D+AVR+ H P+G V Q ERSQ +N+ A++ Sbjct: 11 VETKRGHGNGGQNRNTRDTAVRIVHPPSGAVGESQEERSQLQNKKTAFR 59 >ref|NP_438114.1|integrase-like protein Length = 365 Score = 45.8 bits (107), Expect = 3e-04 Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Frame = +2 Query: 30656 NFRGGRLTSRSVARRLDGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHAS 30835 +F+ S +V +RLD ++L GL R + PH RH A+ L G + QE LGHA Sbjct: 278 SFKLFNFASDTVRKRLDRFILKHGLKR-ITPHGFRHTHASLLFEAGIPAKIAQERLGHAK 336 Query: 30836 LS-TTQRYTHLDWKRLAAVYD 30895 ++ T YTHL K V D Sbjct: 337 IAITMDLYTHLSKKSKDNVAD 357 >ref|NP_795541.1|putative integrase Length = 384 Score = 45.8 bits (107), Expect = 3e-04 Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Frame = +2 Query: 30656 NFRGGRLTSRSVARRLDGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHAS 30835 +F+ S +V +RLD ++L GL R + PH RH A+ L G + QE LGHA Sbjct: 297 SFKLFNFASDTVRKRLDRFILKHGLKR-ITPHGFRHTHASLLFEAGIPAKIAQERLGHAK 355 Query: 30836 LS-TTQRYTHLDWKRLAAVYD 30895 ++ T YTHL K V D Sbjct: 356 IAITMDLYTHLSKKSKDNVAD 376 >ref|NP_958084.1|gp27 Length = 349 Score = 45.8 bits (107), Expect = 3e-04 Identities = 17/38 (44%), Positives = 27/38 (71%) Frame = +2 Query: 30749 HVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH 30862 HVLRH F H + NG ++ +Q++LGHA++ T +Y+H Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYSH 321 >ref|NP_536628.1|Int Length = 345 Score = 45.1 bits (105), Expect = 5e-04 Identities = 23/62 (37%), Positives = 30/62 (48%) Frame = +2 Query: 30677 TSRSVARRLDGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRY 30856 T+ A R L +P HVLRH FATH + N D+ +Q +LGH + T Y Sbjct: 267 TTYGSAHRYIKKALPDYVPEGQATHVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAY 326 Query: 30857 TH 30862 H Sbjct: 327 AH 328 >ref|NP_046786.1|Int Length = 337 Score = 43.5 bits (101), Expect = 0.001 Identities = 19/45 (42%), Positives = 24/45 (53%) Frame = +2 Query: 30728 LPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH 30862 LP H LRH FATH + NG + +Q +LGH + T Y H Sbjct: 262 LPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306 >ref|NP_076696.1|integrase Length = 377 Score = 43.5 bits (101), Expect = 0.001 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = +2 Query: 30647 VFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLG 30826 VF N + G +T+ S+ ++L G + + H LRH A+ +L G ++ + + LG Sbjct: 282 VFYNIKNGLITNNSLNKQLRNMCKKLGFKKIITCHGLRHTHASTMLYKGINILYVSKRLG 341 Query: 30827 HASLSTTQR-YTHL 30865 H+SL+ T Y+H+ Sbjct: 342 HSSLNVTMSVYSHI 355 >ref|NP_076752.1|integrase Length = 394 Score = 42.4 bits (98), Expect = 0.003 Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Frame = +2 Query: 30647 VFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLG 30826 VF N GG L +++ L W+ A LP+ V H RH A+ LL + IQE LG Sbjct: 304 VFPNRTGGVLDYQTMRPFLIKWLRACQLPQ-VGFHGFRHSHASLLLNADVPYKEIQERLG 362 Query: 30827 HASLS-TTQRYTHLD 30868 HAS+ T Y+HL+ Sbjct: 363 HASIKMTMDTYSHLE 377 >ref|NP_061531.1|integrase Length = 369 Score = 40.4 bits (93), Expect = 0.012 Identities = 17/39 (43%), Positives = 26/39 (66%) Frame = +2 Query: 30749 HVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHL 30865 H LRH A L+ G L +++LLGH++++ T+RY HL Sbjct: 289 HDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTERYAHL 327 >ref|NP_510895.1|similar to phage phi 11 integrase Length = 349 Score = 40.4 bits (93), Expect = 0.012 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Frame = +2 Query: 30737 HVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQ-RYTHL 30865 H + H LRH +A++L NG D+ +Q L+ HA ++ T Y+HL Sbjct: 292 HYNIHALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHL 335 >ref|NP_795660.1|putative integrase Length = 362 Score = 40.0 bits (92), Expect = 0.016 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Frame = +2 Query: 30656 NFRGGRLTSRSVARRLDGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHAS 30835 +FR L + +V RRL V L + ++PH RH A+ L G + QE LGHA Sbjct: 275 SFRVFNLLTSTVRRRLKRTVERHHLKK-INPHGFRHTHASLLFEAGVPAKLAQERLGHAK 333 Query: 30836 LS-TTQRYTHL 30865 +S T YTHL Sbjct: 334 ISITMDLYTHL 344 >ref|NP_663635.1|putative integrase Length = 359 Score = 40.0 bits (92), Expect = 0.016 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Frame = +2 Query: 30647 VFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHP---HVLRHCFATHLLGNGADLRGIQE 30817 +F + GG L S S R+ W+L + + P H RH A+ L +G L+ +Q Sbjct: 269 IFESENGGML-SPSKPRK---WLLEITKEKEIEPIRIHAFRHTHASLLFESGMSLKQVQY 324 Query: 30818 LLGHASLSTTQR-YTHL 30865 LGHA L TT YTH+ Sbjct: 325 RLGHADLKTTMNIYTHI 341 >ref|NP_076635.1|integrase Length = 359 Score = 40.0 bits (92), Expect = 0.016 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Frame = +2 Query: 30647 VFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHP---HVLRHCFATHLLGNGADLRGIQE 30817 +F + GG L S S R+ W+L + + P H RH A+ L +G L+ +Q Sbjct: 269 IFESENGGML-SPSKPRK---WLLEITKEKEIEPIRIHAFRHTHASLLFESGMSLKQVQY 324 Query: 30818 LLGHASLSTTQR-YTHL 30865 LGHA L TT YTH+ Sbjct: 325 RLGHADLKTTMNIYTHI 341 >ref|NP_061591.2|integrase Length = 348 Score = 39.7 bits (91), Expect = 0.021 Identities = 17/40 (42%), Positives = 29/40 (72%), Gaps = 1/40 (2%) Frame = +2 Query: 30749 HVLRHCFATHLLGNGADLRGIQELLGHASLS-TTQRYTHL 30865 H LRH +A++L+ NG D+ + EL+ H++++ T Q Y+HL Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHL 335 >ref|NP_803254.1|integrase Length = 348 Score = 39.7 bits (91), Expect = 0.021 Identities = 17/40 (42%), Positives = 29/40 (72%), Gaps = 1/40 (2%) Frame = +2 Query: 30749 HVLRHCFATHLLGNGADLRGIQELLGHASLS-TTQRYTHL 30865 H LRH +A++L+ NG D+ + EL+ H++++ T Q Y+HL Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHL 335 >ref|NP_795489.1|putative integrase Length = 380 Score = 39.3 bits (90), Expect = 0.028 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Frame = +2 Query: 30716 LASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTT-QRYTHLDWKRLAAVY 30892 L + + + H+ RH + L N L+ I E +GHA TT Q YTH+ K ++V Sbjct: 315 LEDPITKKLTSHIFRHTLISRLAENNVPLKSIMERVGHADAKTTAQIYTHVTKKMKSSVA 374 Query: 30893 D 30895 D Sbjct: 375 D 375 >ref|NP_818386.1|gp85 Length = 424 Score = 38.5 bits (88), Expect = 0.047 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = +2 Query: 30707 GWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHA-SLSTTQRYTHL 30865 G PR + PH LRH A+ + +GA+++ +Q LLGHA ++ T Y HL Sbjct: 348 GRATTPAFPR-ITPHDLRHTCASLAISSGANVKAVQNLLGHATAVMTLDLYGHL 400 >ref|YP_006556.1|Ppp Length = 230 Score = 38.5 bits (88), Expect = 0.047 Identities = 20/61 (32%), Positives = 30/61 (49%) Frame = -3 Query: 13279 VVGDVHGCLAELEDLLVAARYEPARDRLVFLGDLMXXXXXXXXXXXXXRALGADCLLGNH 13100 VVGD+HGC L L ++PA+D L+ +GDL+ + ++GNH Sbjct: 25 VVGDLHGCYTRLMSELHRVDFDPAQDLLISVGDLIDRGTENVECLELLQMPWFRAVMGNH 84 Query: 13099 E 13097 E Sbjct: 85 E 85 >ref|NP_665953.1|putative site specific recombinase Int1 Length = 224 Score = 37.7 bits (86), Expect = 0.080 Identities = 21/68 (30%), Positives = 35/68 (51%) Frame = +2 Query: 30674 LTSRSVARRLDGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQR 30853 L+ + RR+ AS L R V+PH LR A+ G ++ ++ ++G A LST ++ Sbjct: 147 LSVNTCRRRVKDAAEASDLNRRVYPHALRATAASTHAYEGLNIASMKAMMGWAKLSTAEK 206 Query: 30854 YTHLDWKR 30877 Y + R Sbjct: 207 YIRISGGR 214 >ref|NP_695079.1|putative integrase Length = 359 Score = 37.7 bits (86), Expect = 0.080 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Frame = +2 Query: 30734 RHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLS-TTQRYTH 30862 R V H LRH +A++L+ + DL + ++LGH +L+ T + Y H Sbjct: 287 REVRVHSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEVYAH 330 >ref|NP_049990.1|integrase Length = 359 Score = 37.7 bits (86), Expect = 0.080 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Frame = +2 Query: 30734 RHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLS-TTQRYTH 30862 R V H LRH +A++L+ + DL + ++LGH +L+ T + Y H Sbjct: 287 REVRVHSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEVYAH 330 >ref|NP_624303.1|integrase fragment Length = 112 Score = 37.7 bits (86), Expect = 0.080 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Frame = +2 Query: 30734 RHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQR-YTHL 30865 ++V H LRH A++LL G ++ + E LGH+++ T+ Y+HL Sbjct: 49 KNVTFHALRHSHASYLLSKGVSIQYVSERLGHSNVGITENVYSHL 93 >ref|NP_599071.1|replication protein Length = 272 Score = 37.4 bits (85), Expect = 0.11 Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 13/122 (10%) Frame = -2 Query: 9170 ALEVGEHQPVHQHVVDEHVAAQVDVVERLAAE-QVALVE--ARDGE------VHLGHV-- 9024 A + GE P +QH+ D+ ++ V+ +AA + LV+ R GE ++L H+ Sbjct: 30 ASDQGECWPSYQHIADQCEISKRSVMNHIAALCESGLVKKVTRKGEKGNSSNIYLLHLDG 89 Query: 9023 VGGDLRGQAEQRPAGHRHPPGGQVAGVGEEQAEVPRAGGGHVP--EPVRDQEQVAALQDE 8850 G L G A +G + PG G + PR P EPV + V A DE Sbjct: 90 AGDSLGGSANNSLSGAANSPGSAGVAPGGSAGDSPRTSHSFEPVKEPVNEPIAVGASVDE 149 Query: 8849 LV 8844 V Sbjct: 150 SV 151 >ref|NP_945240.1|integrase Length = 380 Score = 37.4 bits (85), Expect = 0.11 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Frame = +2 Query: 30716 LASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHA-SLSTTQRYTHLDWKRLAAVY 30892 L + + +++ H+ RH + L N L+ I + +GH+ + +TTQ YTH+ + + V Sbjct: 315 LETPIQKNLTSHIFRHTLVSRLAENNVPLKAIMDRVGHSDAKTTTQIYTHITKQMKSTVA 374 Query: 30893 D 30895 D Sbjct: 375 D 375 >ref|NP_116524.1|integrase Length = 374 Score = 36.6 bits (83), Expect = 0.18 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Frame = +2 Query: 30749 HVLRHCFATHLLGNGADLRGIQELLGHASLSTTQR-YTHL 30865 H LRH A+ LL +G D+ + + LGHAS++ TQ+ Y H+ Sbjct: 316 HGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI 355 >ref|NP_108680.1|integrase Length = 374 Score = 36.6 bits (83), Expect = 0.18 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Frame = +2 Query: 30749 HVLRHCFATHLLGNGADLRGIQELLGHASLSTTQR-YTHL 30865 H LRH A+ LL +G D+ + + LGHAS++ TQ+ Y H+ Sbjct: 316 HGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI 355 >ref|NP_695029.1|Integrase Length = 374 Score = 36.6 bits (83), Expect = 0.18 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Frame = +2 Query: 30749 HVLRHCFATHLLGNGADLRGIQELLGHASLSTTQR-YTHL 30865 H LRH A+ LL +G D+ + + LGHAS++ TQ+ Y H+ Sbjct: 316 HGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI 355 >ref|NP_996675.1|integrase Length = 374 Score = 36.6 bits (83), Expect = 0.18 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Frame = +2 Query: 30749 HVLRHCFATHLLGNGADLRGIQELLGHASLSTTQR-YTHL 30865 H LRH A+ LL +G D+ + + LGHAS++ TQ+ Y H+ Sbjct: 316 HGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI 355 >ref|NP_076573.1|integrase Length = 374 Score = 36.6 bits (83), Expect = 0.18 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Frame = +2 Query: 30749 HVLRHCFATHLLGNGADLRGIQELLGHASLSTTQR-YTHL 30865 H LRH A+ LL +G D+ + + LGHAS++ TQ+ Y H+ Sbjct: 316 HGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI 355 >ref|NP_795605.1|putative phage integrase Length = 388 Score = 36.2 bits (82), Expect = 0.23 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = +2 Query: 30737 HVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHL 30865 H PH++RH FAT G + + LGH++ T +YTH+ Sbjct: 329 HFTPHMMRHFFATQGQIAGVPIEHMAAALGHSNNYMTSQYTHI 371 >ref|NP_795429.1|putative integrase Length = 362 Score = 36.2 bits (82), Expect = 0.23 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Frame = +2 Query: 30647 VFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLG 30826 +F + GG +T + L + + LP+ + H RH A+ L +G L+ +Q LG Sbjct: 268 MFQSESGGIMTPSLPRKWLLQIIKGTDLPQ-ITIHGFRHTHASLLFESGLSLKQVQHRLG 326 Query: 30827 HASLSTTQR-YTHL 30865 H L TT YTH+ Sbjct: 327 HGDLQTTMNVYTHI 340 >ref|NP_075464.1|integrase Length = 401 Score = 36.2 bits (82), Expect = 0.23 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Frame = +2 Query: 30647 VFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLG 30826 +F +G L + +A L A + + V H RH T L+ L+ I + +G Sbjct: 311 IFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVG 370 Query: 30827 HASLSTTQR-YTHLDWK 30874 H TT R YTH+ K Sbjct: 371 HVDEKTTIRIYTHVTEK 387 >ref|NP_803307.1|integrase Length = 401 Score = 36.2 bits (82), Expect = 0.23 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Frame = +2 Query: 30647 VFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLG 30826 +F +G L + +A L A + + V H RH T L+ L+ I + +G Sbjct: 311 IFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVG 370 Query: 30827 HASLSTTQR-YTHLDWK 30874 H TT R YTH+ K Sbjct: 371 HVDEKTTIRIYTHVTEK 387 >ref|NP_058467.1|integrase Length = 401 Score = 36.2 bits (82), Expect = 0.23 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Frame = +2 Query: 30647 VFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLG 30826 +F +G L + +A L A + + V H RH T L+ L+ I + +G Sbjct: 311 IFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVG 370 Query: 30827 HASLSTTQR-YTHLDWK 30874 H TT R YTH+ K Sbjct: 371 HVDEKTTIRIYTHVTEK 387 >ref|NP_817502.1|gp53 Length = 293 Score = 36.2 bits (82), Expect = 0.23 Identities = 62/275 (22%), Positives = 98/275 (35%), Gaps = 1/275 (0%) Frame = +2 Query: 30065 RASPHTRKAYQVDLAQYAAYLADQGQPLVPSSPALVRGFLARQAGAAGAVSLGRKLSALR 30244 R S T +AY + Y + + L P A + ++ A A ++ +L+A++ Sbjct: 21 RKSAETIRAYGGSVEGYLNFCVEG--ELAPLEKASLLAWVNSMASLQPA-TVHLRLTAVK 77 Query: 30245 SLYRFLVREGLAPGNPARAVASPKRPKRXXXXXXXXXXXXXXXTPDAAGEAPLALRDRAF 30424 R++ E + V PK ++ T AG RD+A Sbjct: 78 QFMRWVADEEGVNVDGLLVVRPPKLDQKVVKHLSDRAVQALVAT--CAGNTFRDRRDKAL 135 Query: 30425 LELLYGSGLRVSEXXXXXXXXXXXXXXXVRVL-GKRNKERIVPFGAPAAEALRRYLDGAR 30601 + L +G+R +E + V GK K R V + A + +YL R Sbjct: 136 IVLFTETGIRAAEMLALDVEDVSLVDCQLTVRRGKGAKGRRVKYSPMCAATIDKYLRARR 195 Query: 30602 PVLXXXXXXXXXXXXVFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPHVLRHCFATHL 30781 L++ G + S+ RR D +G+P HPH LRH A Sbjct: 196 RAGHGSEGPLWIGLGGRLSYTGMK---SSLKRRADD----AGVPGF-HPHRLRHTSAVRW 247 Query: 30782 LGNGADLRGIQELLGHASLSTTQRYTHLDWKRLAA 30886 L G G+ G S RY + LA+ Sbjct: 248 LKAGGSEAGLMAQAGWQSRRQIDRYIKSAAEELAS 282 >ref|YP_115515.1|integrase Length = 427 Score = 36.2 bits (82), Expect = 0.23 Identities = 37/126 (29%), Positives = 48/126 (38%), Gaps = 18/126 (14%) Frame = +2 Query: 30539 RIVPFGAPAAEALRRYLDGARPV-----LXXXXXXXXXXXXVFLNFRGGRLTSRSVARRL 30703 R VP A +A+R + RP + VF +GG LT + R Sbjct: 276 RTVPLTPQAEDAIRTMVTRWRPTPTITPIGEDPYDLAPDELVFRGPQGGVLTRHNFRRTW 335 Query: 30704 DGWVLASGLPRHV------------HPHVLRHCFATHLLGNGADLRGIQELLGHASLS-T 30844 + A+GL R V H LRH FAT L G D + Q ++GH S Sbjct: 336 IPAIKAAGLAREVKNRDTGRMEWWPRVHDLRHVFATWLKDVGIDEKDTQTVMGHERGSKV 395 Query: 30845 TQRYTH 30862 T Y H Sbjct: 396 TWLYQH 401 >ref|YP_006863.1|putative serine Length = 287 Score = 35.8 bits (81), Expect = 0.31 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = -3 Query: 13276 VGDVHGCLAELEDLLVAARYEPARDRLVFLGDLM 13175 VGD+HGC LED L A Y +D +V +GDL+ Sbjct: 22 VGDIHGCNDLLEDALQLAGYNGKKDCVVCVGDLI 55 >ref|NP_818023.1|gp50 Length = 424 Score = 35.4 bits (80), Expect = 0.40 Identities = 19/46 (41%), Positives = 23/46 (50%) Frame = +2 Query: 30749 HVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDWKRLAA 30886 H RH AT L NG D + E+LGH S + Y H D R +A Sbjct: 363 HSARHTAATVLRSNGVDEQTRMEILGHNSPEVARVYAHADQARNSA 408 >ref|NP_817384.1|gp46 Length = 436 Score = 35.4 bits (80), Expect = 0.40 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = +2 Query: 30746 PHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDWKR 30877 PH RH +T L G D + E+LGHAS+ + Y H D R Sbjct: 369 PHNSRHTTSTLLRAAGVDEQTRMEILGHASVDAQRIYAHADRAR 412 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 35.4 bits (80), Expect = 0.40 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Frame = -3 Query: 1003 RVPDARHPLAVRGAGPLHRGRPEQHV--RALERRQPGGGRREAPDVRRHVQRVGRLRPRH 830 R PD R + R +HR R + V R R +PG G P R H + +RPR Sbjct: 164 RRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRR 223 Query: 829 QVGAGAVRLHRKRHEAR 779 + G R HR+R R Sbjct: 224 RTG----RRHRRRASLR 236 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,804,600 Number of Sequences: 14420 Number of extensions: 1491787 Number of successful extensions: 6691 Number of sequences better than 0.5: 47 Number of HSP's better than 0.5 without gapping: 3959 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6675 length of database: 3,019,461 effective HSP length: 114 effective length of database: 1,375,581 effective search space used: 16560619659 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig55 (41,525 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164437.1|lysin 81 9e-15 ref|NP_690702.1|amidase 71 7e-12 ref|NP_073698.1|peptidoglycan hydrolase 71 1e-11 ref|NP_076698.1|repressor 63 3e-09 ref|NP_108682.1|cI2009 62 4e-09 ref|NP_996677.1|phage repressor 62 4e-09 ref|NP_116527.1|cI repressor 62 6e-09 ref|NP_817502.1|gp53 61 8e-09 ref|NP_695031.1|Repressor 60 2e-08 ref|NP_536628.1|Int 60 2e-08 ref|NP_612994.1|hypothetical protein 59 3e-08 ref|NP_049482.1|serine 59 3e-08 ref|NP_046786.1|Int 56 3e-07 ref|NP_852561.1|DNA integration 52 4e-06 ref|NP_878228.1|Int 51 1e-05 ref|NP_061531.1|integrase 50 1e-05 ref|NP_839878.1|Int 50 1e-05 ref|NP_052278.1|Int 50 2e-05 ref|NP_958623.1|77ORF007 50 2e-05 ref|NP_958506.1|putative integrase 49 3e-05 ref|NP_599074.1|unknown 48 7e-05 ref|NP_040813.1|integrase 48 9e-05 ref|NP_803307.1|integrase 47 1e-04 ref|NP_536807.1|integrase 47 2e-04 ref|NP_043466.1|integrase 47 2e-04 ref|NP_075464.1|integrase 46 3e-04 ref|NP_058467.1|integrase 46 3e-04 ref|NP_958084.1|gp27 46 3e-04 ref|NP_599066.1|repressor 45 4e-04 ref|NP_795429.1|putative integrase 45 6e-04 ref|NP_663635.1|putative integrase 44 0.001 ref|NP_076635.1|integrase 44 0.001 ref|NP_510900.1|similar to phage phi PVL repressor 44 0.001 ref|NP_490644.1|integrase 44 0.001 ref|NP_076752.1|integrase 43 0.002 ref|NP_795660.1|putative integrase 43 0.003 ref|YP_006379.1|CI 43 0.003 ref|NP_835522.1|similar to repressor 42 0.004 ref|NP_803311.1|cI-like repressor 42 0.004 ref|NP_817384.1|gp46 42 0.004 ref|NP_795489.1|putative integrase 42 0.005 ref|NP_862840.1|gp1 42 0.005 ref|NP_945240.1|integrase 42 0.005 ref|NP_803258.1|cI-like repressor 42 0.006 ref|NP_510895.1|similar to phage phi 11 integrase 42 0.006 ref|NP_624303.1|integrase fragment 42 0.006 ref|NP_438114.1|integrase-like protein 41 0.008 ref|NP_795541.1|putative integrase 41 0.008 ref|NP_803358.1|cI-like repressor 41 0.008 ref|NP_058469.1|repressor 41 0.008 ref|YP_164276.1|LexA-like protein 41 0.008 ref|NP_818386.1|gp85 41 0.008 ref|NP_958626.1|77ORF011 41 0.008 ref|NP_061591.2|integrase 40 0.018 ref|NP_803254.1|integrase 40 0.018 ref|NP_071803.1|putative integrase 40 0.018 ref|NP_958701.1|repressor protein cI 40 0.018 ref|NP_996594.1|repressor protein cI 40 0.018 ref|NP_996642.1|repressor protein cI 40 0.018 ref|NP_680502.1|integrase 40 0.024 ref|NP_050999.1|P38 40 0.024 ref|NP_061595.1|repressor 39 0.031 ref|NP_695147.1|integrase 39 0.031 ref|NP_046921.1|gp26 39 0.041 ref|NP_059606.1|C2 39 0.053 ref|NP_076696.1|integrase 39 0.053 ref|NP_511007.1|integrase 38 0.069 ref|NP_076801.1|integrase 38 0.069 ref|NP_076573.1|integrase 38 0.069 ref|YP_164382.1|integrase 38 0.069 ref|NP_116524.1|integrase 38 0.091 ref|NP_108680.1|integrase 38 0.091 ref|NP_695029.1|Integrase 38 0.091 ref|NP_996675.1|integrase 38 0.091 ref|YP_025047.1|putative integrase 38 0.091 ref|NP_695079.1|putative integrase 37 0.15 ref|NP_049990.1|integrase 37 0.15 ref|YP_006569.1|HumD 36 0.26 ref|NP_835517.1|integrase 36 0.34 ref|NP_803356.1|integrase 36 0.34 ref|NP_818023.1|gp50 35 0.45 >ref|YP_164437.1|lysin Length = 355 Score = 80.9 bits (198), Expect = 9e-15 Identities = 66/208 (31%), Positives = 92/208 (44%), Gaps = 3/208 (1%) Frame = +1 Query: 25849 RIVVDAGHGGHDPGAIGPTRVREKDVTLAIARRLARKLEAE--GFQVVLTRRDDRFLALE 26022 ++ +DAGHGG DPGA+ +REKD+ L +A + LE E +V L+R D FL L Sbjct: 13 KVFIDAGHGGSDPGAVA-NGLREKDLCLQVALAVKTILENEYENVEVRLSRETDVFLTLG 71 Query: 26023 ERTALANTARGDLFVSVHANAHPRRVRAGVETY-FLNVXXXXXXXXXXXXENGIDAEDGP 26199 ER LAN D+F+S+H NA G ET+ + N D Sbjct: 72 ERCRLANNWGADIFISIHFNAF-TPAATGFETFRYRNAPNR--------------TRDAH 116 Query: 26200 SEVARIXXXXXXXXXXXXXXXXXQLVQREVCAGVRSRVGDVKDLGVKSALFYVLLGARMP 26379 E+ R+ ++ G + D G K+A FYV+ M Sbjct: 117 VEIHRVMF-------------------------AQAFRGKMPDRGSKTAGFYVVKNTNMT 151 Query: 26380 AVLVETGFISNRAEERRLGSARYQDEVA 26463 AVL E GF++N + R L S + EVA Sbjct: 152 AVLTEGGFLTNSNDARHLKSGAFLREVA 179 >ref|NP_690702.1|amidase Length = 271 Score = 71.2 bits (173), Expect = 7e-12 Identities = 64/214 (29%), Positives = 88/214 (41%), Gaps = 3/214 (1%) Frame = +1 Query: 25858 VDAGHGGHDPGAIGPTRVREKDVTLAIARRLARKLEAE-GFQVVLTRRDDRFLALEERTA 26034 +DAGHGG D GA ++EKD+ L I +++ L + V LTR D F L +R Sbjct: 7 LDAGHGGKDSGAAA-NGIKEKDIVLKIVKKVKSILTSRYEVAVKLTRDSDVFYELIDRAR 65 Query: 26035 LANTARGDLFVSVHANAHPRRVRAGVETYFLNVXXXXXXXXXXXXENGIDAEDGPSEVAR 26214 AN A+ DLFVSVH NA P G ETY + + G Sbjct: 66 KANAAKADLFVSVHINATPG--GKGFETY-------------RYVKTSASSSTGQQ---- 106 Query: 26215 IXXXXXXXXXXXXXXXXXQLVQREVCAGVRSRVG--DVKDLGVKSALFYVLLGARMPAVL 26388 Q+ + + R+ +KD G K+A VL MPAVL Sbjct: 107 ---------------------QKVLHDAIYKRIKKYGIKDRGEKAADLSVLRNTSMPAVL 145 Query: 26389 VETGFISNRAEERRLGSARYQDEVASGITRAVTQ 26490 E FI N+ E L + ++VA G + + Sbjct: 146 TENLFIDNKDEAALLKKDSFLNDVAEGHAEGIAE 179 >ref|NP_073698.1|peptidoglycan hydrolase Length = 239 Score = 70.9 bits (172), Expect = 1e-11 Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 2/216 (0%) Frame = +1 Query: 25852 IVVDAGHGGHDPGAIGPTRVREKDVTLAIARRLARKLEAE--GFQVVLTRRDDRFLALEE 26025 IV+D GHGG D GA+ +V EK++ + + + LE+ G +V+LTR DD F++L + Sbjct: 5 IVLDGGHGGKDAGAVNG-KVYEKNLVMKLVNKTKHYLESAYVGHKVLLTRSDDTFVSLSD 63 Query: 26026 RTALANTARGDLFVSVHANAHPRRVRAGVETYFLNVXXXXXXXXXXXXENGIDAEDGPSE 26205 R + AN + + FVS H NA G + PS Sbjct: 64 RASYANKQKANAFVSFHINA--------------------------GGGTGFETFKYPSA 97 Query: 26206 VARIXXXXXXXXXXXXXXXXXQLVQREVCAGVRSRVGDVKDLGVKSALFYVLLGARMPAV 26385 R+ + V E+ ++ +VKD G KSA V+ +M AV Sbjct: 98 EGRL----------------QKYVHDEIKQVLKKY--NVKDRGRKSANLAVVRETKMEAV 139 Query: 26386 LVETGFISNRAEERRLGSARYQDEVASGITRAVTQF 26493 L ET FI + L + ++ DE+A V +F Sbjct: 140 LTETLFIDKATDLELLKNDKFMDEIAIAHAVGVAKF 175 >ref|NP_076698.1|repressor Length = 278 Score = 62.8 bits (151), Expect = 3e-09 Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 3/117 (2%) Frame = -2 Query: 17152 VVPLVRGPARPGSRMIEIPIVGRVAAGMPILAQERVEDTVQVDAFLLGTNKKVYGLRVQG 16973 V+P P M+++PI+GR+AAG+P+ A E + T V A L + + Y L V G Sbjct: 137 VMPTNTMEYEPDEDMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDG 196 Query: 16972 DSMIGDGILP-GDYVFVKKQLNADDGEIVVAMIDD--EATVKRVYFEGDRVRFQPSN 16811 SM + +P G YV ++ + DG I + D +AT+K+VY E D +R N Sbjct: 197 HSM--EPKIPFGSYVLIEAVPDVTDGTIGAVLFQDDCQATLKKVYHEIDCLRLVSIN 251 >ref|NP_108682.1|cI2009 Length = 286 Score = 62.0 bits (149), Expect = 4e-09 Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 2/106 (1%) Frame = -2 Query: 17122 PGSRMIEIPIVGRVAAGMPILAQERVEDTVQVDAFLLGTNKKVYGLRVQGDSMIGDGILP 16943 P M+++PI+GR+AAG+P+ A E + T V A L + + Y L V G SM I Sbjct: 155 PDEDMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSM-EPKIPY 213 Query: 16942 GDYVFVKKQLNADDGEIVVAMIDD--EATVKRVYFEGDRVRFQPSN 16811 G YV ++ + DG I + D +AT+K+VY E D +R N Sbjct: 214 GAYVLIEAVPDVSDGTIGAVLFQDDCQATLKKVYHEIDCLRLVSIN 259 >ref|NP_996677.1|phage repressor Length = 286 Score = 62.0 bits (149), Expect = 4e-09 Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Frame = -2 Query: 17152 VVPLVRGPARPGSRMIEIPIVGRVAAGMPILAQERVEDTVQVDAFLLGTNKKVYGLRVQG 16973 V+P P M+++PI+GR+AAG+P+ A E + T V A L + + Y L V G Sbjct: 145 VMPTNTMEYEPDEDMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDG 204 Query: 16972 DSMIGDGILPGDYVFVKKQLNADDGEIVVAMIDD--EATVKRVYFEGDRVRFQPSN 16811 SM I G YV ++ + DG I + D +AT+K+VY E D +R N Sbjct: 205 HSM-EPKIPYGAYVLIEAVPDVSDGTIGAVLFHDDCQATLKKVYHEIDCLRLVSIN 259 >ref|NP_116527.1|cI repressor Length = 297 Score = 61.6 bits (148), Expect = 6e-09 Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Frame = -2 Query: 17152 VVPLVRGPARPGSRMIEIPIVGRVAAGMPILAQERVEDTVQVDAFLLGTNKKVYGLRVQG 16973 V+P P M+++PI+GR+AAG+P+ A E + T V A L + + Y L V G Sbjct: 156 VMPTNTMEYEPDEDMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDG 215 Query: 16972 DSMIGDGILPGDYVFVKKQLNADDGEIVVAMIDD--EATVKRVYFEGDRVRFQPSN 16811 SM I G YV ++ + DG I + D +AT+K+VY E D +R N Sbjct: 216 HSM-EPKIPYGAYVLIEAVPDVTDGTIGAVLFHDDCQATLKKVYHEIDCLRLVSIN 270 >ref|NP_817502.1|gp53 Length = 293 Score = 61.2 bits (147), Expect = 8e-09 Identities = 65/262 (24%), Positives = 107/262 (40%), Gaps = 1/262 (0%) Frame = +2 Query: 33929 DLFLAHVRVEKGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRSEIQAHLAELVRRGL 34108 D +L +R + AE ++ AYG + YL E + E+ +A L Sbjct: 11 DSWLMELRAARKSAE-TIRAYGGSVEGYLNFCVEGELAPLEKASLLAWVNSMASL----- 64 Query: 34109 SPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLLAAPDV 34288 P + L+A++ R +A E + D + P+ +++ LS V L+A Sbjct: 65 QPATVHLRLTAVKQFMRWVADEEGVNVDGLLVVRPPKLDQKVVKHLSDRAVQALVATCAG 124 Query: 34289 RSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNL-ETRVLVARGKGDKERIVPVGXXXX 34465 + RD+A++ L TG+R +E+++L + DV+L + ++ V RGKG K R V Sbjct: 125 NTFRDRRDKALIVLFTETGIRAAEMLALDVEDVSLVDCQLTVRRGKGAKGRRVKYS---P 181 Query: 34466 XXXXXXXXXXRERLLHGRRSKDLFVTPRGGRMTRQGFAKILDXXXXXXXXXXXXSPHKLR 34645 R R G S+ GGR++ G L PH+LR Sbjct: 182 MCAATIDKYLRARRRAGHGSEGPLWIGLGGRLSYTGMKSSL-KRRADDAGVPGFHPHRLR 240 Query: 34646 HSFATHLLEGGADLRAVQEMLG 34711 H+ A L+ G + G Sbjct: 241 HTSAVRWLKAGGSEAGLMAQAG 262 >ref|NP_695031.1|Repressor Length = 278 Score = 60.1 bits (144), Expect = 2e-08 Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 2/102 (1%) Frame = -2 Query: 17110 MIEIPIVGRVAAGMPILAQERVEDTVQVDAFLLGTNKKVYGLRVQGDSMIGDGILPGDYV 16931 M+++PI+GR+AAG+P+ A E + T V A L + + Y L V G SM I G YV Sbjct: 151 MVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSM-EPKIPYGAYV 209 Query: 16930 FVKKQLNADDGEIVVAMIDD--EATVKRVYFEGDRVRFQPSN 16811 ++ + DG I + D +AT+K+VY E D +R N Sbjct: 210 LIEAVPDVSDGTIGAVLFHDDCQATLKKVYHEIDCLRLVSIN 251 >ref|NP_536628.1|Int Length = 345 Score = 60.1 bits (144), Expect = 2e-08 Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 6/228 (2%) Frame = +2 Query: 34100 RGLSPRSQARALSAIRSLH-RLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLLA 34276 + LSP Q L+ + + RL+ ++ +P D+IE + +R L ++ L Sbjct: 125 KSLSPTYQNFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLDKADIQPFLQ 184 Query: 34277 A-----PDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGDKERI 34441 D RS + + ++ ATG R+SE +SL+ + ++ E ++ KG + R Sbjct: 185 RLGGFESDGRSVSIPEIVLIAKICLATGARISEALSLERSQIS-EFKLTFVETKGKRIRS 243 Query: 34442 VPVGXXXXXXXXXXXXXXRERLLHGRRSKDLFVTPRGGRMTRQGFAKILDXXXXXXXXXX 34621 VP+ +E +L S +F T G + K L Sbjct: 244 VPISENLY----------KEIMLASSSSTKIFSTTYGS--AHRYIKKALPDYVPEGQ--- 288 Query: 34622 XXSPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHV 34765 + H LRH+FATH + D+ +Q +LGH + T Y H H+ Sbjct: 289 --ATHVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHL 334 >ref|NP_612994.1|hypothetical protein Length = 348 Score = 59.3 bits (142), Expect = 3e-08 Identities = 55/261 (21%), Positives = 108/261 (41%), Gaps = 6/261 (2%) Frame = -1 Query: 7574 GGMAVVYRGRDTALDREVAVKLLHPHLASAPDSRARFSREARAVARLSHPSIVEIYDYAG 7395 G + VY D L ++ +K + + D + EAR + + +HP+IV++ YA Sbjct: 22 GCFSKVYLAHDRHLAHDLVIKEIEKKENTNHDD---YFNEARLLYKHAHPNIVQV-QYAA 77 Query: 7394 DAAVESYLVTEFVRGRTLRAWAAGVGFGFPELGMLVGRTXXXXXXXXXXAGVIHRDLKPE 7215 Y+ F +L E+ + G++H D+KP Sbjct: 78 QCESNIYIAMPFYHNGSLNQLMKKNNLTSREI-IRYSIQFLSGLYHIHSKGLMHFDIKPN 136 Query: 7214 NVLVHEDEPPSVKLADFGIARILASDERMTMTGALVGSPHHMAPEI--VEGHDADARSDV 7041 N+++ L+DFG+++++ + R G H+ PE + +D + D+ Sbjct: 137 NIMISNRN--EAMLSDFGLSQLVNEESRAAPE---FGYHFHVPPEYFSLSTNDYNFTYDI 191 Query: 7040 FSLGTILYWLATGKLPF----AASNPTAILRRVLEGDFEDPRQADPRVPGALAALIRRCL 6873 + G +Y + G F +A + LR + ++ P + L ++ +C+ Sbjct: 192 YQAGLTIYRMCVGHDNFERERSAFSTIEQLRESIINGCYPLKEYPPHIHKKLITIVNKCI 251 Query: 6872 QVDPAKRPASMVEVRDALDRI 6810 VDP +R S+++V + L I Sbjct: 252 HVDPNERYQSVLDVLNDLSAI 272 >ref|NP_049482.1|serine Length = 348 Score = 59.3 bits (142), Expect = 3e-08 Identities = 55/261 (21%), Positives = 108/261 (41%), Gaps = 6/261 (2%) Frame = -1 Query: 7574 GGMAVVYRGRDTALDREVAVKLLHPHLASAPDSRARFSREARAVARLSHPSIVEIYDYAG 7395 G + VY D L ++ +K + + D + EAR + + +HP+IV++ YA Sbjct: 22 GCFSKVYLAHDRHLAHDLVIKEIEKKENTNHDD---YFNEARLLYKHAHPNIVQV-QYAA 77 Query: 7394 DAAVESYLVTEFVRGRTLRAWAAGVGFGFPELGMLVGRTXXXXXXXXXXAGVIHRDLKPE 7215 Y+ F +L E+ + G++H D+KP Sbjct: 78 QCESNIYIAMPFYHNGSLNQLMKKNNLTSREI-IRYSIQFLSGLYHIHSKGLMHFDIKPN 136 Query: 7214 NVLVHEDEPPSVKLADFGIARILASDERMTMTGALVGSPHHMAPEI--VEGHDADARSDV 7041 N+++ L+DFG+++++ + R G H+ PE + +D + D+ Sbjct: 137 NIMISNRN--EAMLSDFGLSQLVNEESRAAPE---FGYHFHVPPEYFSLSTNDYNFTYDI 191 Query: 7040 FSLGTILYWLATGKLPF----AASNPTAILRRVLEGDFEDPRQADPRVPGALAALIRRCL 6873 + G +Y + G F +A + LR + ++ P + L ++ +C+ Sbjct: 192 YQAGLTIYRMCVGHDNFERERSAFSTIEQLRESIINGCYPLKEYPPHIHKKLITIVNKCI 251 Query: 6872 QVDPAKRPASMVEVRDALDRI 6810 VDP +R S+++V + L I Sbjct: 252 HVDPNERYQSVLDVLNDLSAI 272 >ref|NP_046786.1|Int Length = 337 Score = 55.8 bits (133), Expect = 3e-07 Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 1/233 (0%) Frame = +2 Query: 34052 RVGRSEIQAHLAELVRRGLSPRSQARALSAIRSLHR-LLAAERVTSADPSDEIESPRPGR 34228 ++ +S I + A +G+ P S R L+ I + L+ AE P + + + Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEK 159 Query: 34229 RLPGLLSHDEVDRLLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVL 34408 G L+ +E+ LLAA D + + + L +TG R E L+ ++ + RV Sbjct: 160 PETGYLTQEEIALLLAALDGDN------KKIAILCLSTGARWGEAARLKAENI-IHNRVT 212 Query: 34409 VARGKGDKERIVPVGXXXXXXXXXXXXXXRERLLHGRRSKDLFVTPRGGRMTRQGFAKIL 34588 + K +K R VP+ +++ + LF R R A Sbjct: 213 FVKTKTNKPRTVPISEAVA------------KMIADNKRGFLFPDADYPRFRRTMKAIKP 260 Query: 34589 DXXXXXXXXXXXXSPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTH 34747 D + H LRHSFATH + G + +Q +LGH + T +Y H Sbjct: 261 DLPMGQ-------ATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306 >ref|NP_852561.1|DNA integration Length = 369 Score = 52.4 bits (124), Expect = 4e-06 Identities = 57/261 (21%), Positives = 105/261 (40%), Gaps = 18/261 (6%) Frame = +2 Query: 34022 LDELGVDAWERVGRSEIQAHLAELVRRGLSPRSQARALSAIRSLHRLLAAERVTSADPSD 34201 + +G+ ++ IQ + +G++ S ++S L + + S +P+D Sbjct: 97 IPSIGMVTLHKLNVIHIQKCYKTAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPAD 156 Query: 34202 EIESPRPGRRLPGLLSHDEVDRLLA-APDVRSAAGIRDRAMLELLYATGLRVSELVSLQL 34378 E P+ + + +EV + LA + + R G L TG+R+ E++ L+ Sbjct: 157 FAEIPKKEKTPIQTWTEEEVKKFLAHSQESRYHIGYL------LAITTGMRLGEVLGLRW 210 Query: 34379 NDVNLETRVLVAR---GKGDK----------ERIVPV-GXXXXXXXXXXXXXXRERLLHG 34516 D++ E + G +K +R +PV +E+L G Sbjct: 211 QDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPNETIAALKKHKILINKEKLRFG 270 Query: 34517 RR--SKDLFVTPRGGRMTRQGFAKILDXXXXXXXXXXXXSPHKLRHSFATHLLEGGADLR 34690 +DL GR+ ++ + H LRH+ AT LL+ G + + Sbjct: 271 SAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPK 330 Query: 34691 AVQEMLGHADVS-TTQIYTHV 34750 + E LGH D+S T +Y+HV Sbjct: 331 IISERLGHTDISMTLSVYSHV 351 >ref|NP_878228.1|Int Length = 326 Score = 50.8 bits (120), Expect = 1e-05 Identities = 56/255 (21%), Positives = 102/255 (40%), Gaps = 3/255 (1%) Frame = +2 Query: 33995 RDLRRYLEHLDELGVDAWERVGRSEIQAHLAELVRRGLSPRSQARALSAIRSLHRLLAAE 34174 ++ L+ + +G R+ + + + + +R G+S A + R ++RL + Sbjct: 81 KEFNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGIS------AATINRDMYRL--SG 132 Query: 34175 RVTSADPSDEIESPRPGRRLPGLLSHDEVDRLLAAPDVRSAAGIR---DRAMLELLYATG 34345 T DE P LP L + L ++ + D + L +TG Sbjct: 133 MFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLAGDDLLVALLCLSTG 192 Query: 34346 LRVSELVSLQLNDVNLETRVLVARGKGDKERIVPVGXXXXXXXXXXXXXXRERLLHGRRS 34525 R +E+ +L+ + RV + K K+R VP+ E+ + S Sbjct: 193 GRWTEVATLKPAQIT-NCRVTFLKTKNGKKRTVPISEEL------------EKKVKEEAS 239 Query: 34526 KDLFVTPRGGRMTRQGFAKILDXXXXXXXXXXXXSPHKLRHSFATHLLEGGADLRAVQEM 34705 LF ++ + F IL + H LRH+FA+H + G ++ A+Q++ Sbjct: 240 AKLF------KVDYEKFCGIL--RRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQI 291 Query: 34706 LGHADVSTTQIYTHV 34750 LGHA + T Y H+ Sbjct: 292 LGHASIQQTMAYAHL 306 >ref|NP_061531.1|integrase Length = 369 Score = 50.4 bits (119), Expect = 1e-05 Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 16/254 (6%) Frame = +2 Query: 34055 VGRSEIQAHLAELVRRGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRL 34234 +G +I+ + A + G SP + R L+A L AA + + + +P GR++ Sbjct: 100 LGGQDIRGYGAHRLDAGASPATINRELAA------LSAAINHCNTELEWALPNPVKGRKM 153 Query: 34235 PGLLSHDEVDRLLAAPDV----RSAAGIRDRAMLE----LLYATGLRVSELVSLQLNDVN 34390 + DR L +V R+A G + MLE L TG R E++ L+ V+ Sbjct: 154 R---EAEGRDRWLTRAEVEALCRAARGQKFGPMLEDFIRLAVNTGCRREEMLGLEWRRVD 210 Query: 34391 LETRVL---VARGKGDKERIVPVGXXXXXXXXXXXXXXRERL-----LHGRRSKDLFVTP 34546 R++ + K K R +P+ E + R + D ++ Sbjct: 211 FANRLIYLEASHTKAGKRRSIPINEGAMAALKRRMAFRSETSPECPWVFARANGDRVISL 270 Query: 34547 RGGRMTRQGFAKILDXXXXXXXXXXXXSPHKLRHSFATHLLEGGADLRAVQEMLGHADVS 34726 G AKI D H LRH+ A L+ G L V+++LGH+ V+ Sbjct: 271 SAGFKQACQAAKIADFTI-----------HDLRHTCAAWLVSAGVPLADVRDLLGHSTVA 319 Query: 34727 TTQIYTHVDRTHVK 34768 T+ Y H+ V+ Sbjct: 320 MTERYAHLAPARVR 333 >ref|NP_839878.1|Int Length = 326 Score = 50.4 bits (119), Expect = 1e-05 Identities = 56/255 (21%), Positives = 102/255 (40%), Gaps = 3/255 (1%) Frame = +2 Query: 33995 RDLRRYLEHLDELGVDAWERVGRSEIQAHLAELVRRGLSPRSQARALSAIRSLHRLLAAE 34174 ++ L+ + +G R+ + + + + +R G+S A + R ++RL + Sbjct: 81 KEFNHLLKTISGIGDIPVSRMSKRALMDYRSIRLRDGIS------AATINRDMYRL--SG 132 Query: 34175 RVTSADPSDEIESPRPGRRLPGLLSHDEVDRLLAAPDVRSAAGIR---DRAMLELLYATG 34345 T DE P LP L + L ++ + D + L +TG Sbjct: 133 MFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLAGDDLLVALLCLSTG 192 Query: 34346 LRVSELVSLQLNDVNLETRVLVARGKGDKERIVPVGXXXXXXXXXXXXXXRERLLHGRRS 34525 R +E+ +L+ + RV + K K+R VP+ E+ + S Sbjct: 193 GRWTEVATLKPAQIT-NCRVTFLKTKNGKKRTVPISEEL------------EKKVKEEAS 239 Query: 34526 KDLFVTPRGGRMTRQGFAKILDXXXXXXXXXXXXSPHKLRHSFATHLLEGGADLRAVQEM 34705 LF ++ + F IL + H LRH+FA+H + G ++ A+Q++ Sbjct: 240 AKLF------KVDYEKFCGIL--RRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQI 291 Query: 34706 LGHADVSTTQIYTHV 34750 LGHA + T Y H+ Sbjct: 292 LGHASIQQTMAYAHL 306 >ref|NP_052278.1|Int Length = 336 Score = 50.1 bits (118), Expect = 2e-05 Identities = 42/175 (24%), Positives = 70/175 (40%) Frame = +2 Query: 34244 LSHDEVDRLLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGK 34423 L+HD++ +LL + + ++ + ATG R SE SL+ + + + ++ K Sbjct: 170 LTHDQISQLLGECNRHDHPDLE--TVVRICLATGARWSEAESLRKSQL-AKYKITYTNTK 226 Query: 34424 GDKERIVPVGXXXXXXXXXXXXXXRERLLHGRRSKDLFVTPRGGRMTRQGFAKILDXXXX 34603 G K R VP+ GR D + R + R G Sbjct: 227 GRKNRTVPISKELYESLPDDKK--------GRLFSDCYGAFRSA-LERTGIE-------- 269 Query: 34604 XXXXXXXXSPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVK 34768 H LRH+FA+H + G ++ +Q +LGH D+ T Y H H++ Sbjct: 270 ---LPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLE 321 >ref|NP_958623.1|77ORF007 Length = 401 Score = 49.7 bits (117), Expect = 2e-05 Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 22/185 (11%) Frame = +2 Query: 34262 DRLLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGK------ 34423 D +L +++ A I +E+ TG+R+ EL++LQ+ DV+L+ + + G Sbjct: 200 DFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKDVDLKNKTIAINGTIHRIKC 259 Query: 34424 ----GDKERIVPVGXXXXXXXXXXXXXXRERLLHGRRSKD-----------LFVTPRGGR 34558 G K+ G ++++ + +F T +G Sbjct: 260 NAGFGHKDTTKTAGSRRKIAINSRIANVLKKIMLENKKMQQWEPSYVDRGFIFTTCQGNP 319 Query: 34559 MTRQGFAKILDXXXXXXXXXXXXSPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTT-Q 34735 M K L + H LRH+ + L E L+A+ + +GH D TT + Sbjct: 320 MQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNISLKAIMKRVGHTDEKTTIK 379 Query: 34736 IYTHV 34750 +YTHV Sbjct: 380 VYTHV 384 >ref|NP_958506.1|putative integrase Length = 391 Score = 49.3 bits (116), Expect = 3e-05 Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 29/203 (14%) Frame = +2 Query: 34247 SHDEVDRLLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVL-----V 34411 + DE+++ L +V G+ +LL ATGLR SE ++L +D+NL L + Sbjct: 181 TQDELNQFL---EVAKDYGLVPYTYFKLLSATGLRKSEALALTWSDINLTAGTLSVNKTL 237 Query: 34412 ARGKGDKERIVPVGXXXXXXXXXXXXXXRERLLHGRR-----SKDLFVTPRG-------- 34552 A G K I P +E L+ +R SK+LF T +G Sbjct: 238 AYGLNGKTIIQPPKSPKSKRILPISDGLKEVLIDYKRKQKIISKELFHTNKGTYLRISKP 297 Query: 34553 GRMTRQGFAKILDXXXXXXXXXXXXSP---------HKLRHSFATHLL-EGGADLRAVQE 34702 + + +AK + P H RH+FAT L+ E + VQ Sbjct: 298 DQWLKSIYAKDHEEKAEYAKKYNLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQM 357 Query: 34703 MLGHADVS-TTQIYTHVDRTHVK 34768 +LGH ++ T IYTH+++ + + Sbjct: 358 LLGHENIQMTLDIYTHINKKNTE 380 >ref|NP_599074.1|unknown Length = 108 Score = 48.1 bits (113), Expect = 7e-05 Identities = 23/57 (40%), Positives = 35/57 (61%) Frame = -2 Query: 17407 MEGLTDRQLEVLRFIASQIEDHGYPPTIREIGEALDIRSTNGVNDHLKALERKGYLS 17237 M LT Q +VL + S ++ G+PPT +E+ L RS N +HL+ALE+KG ++ Sbjct: 1 MTTLTQCQQQVLDMLISYQKERGFPPTNQEVATMLGYRSVNAAVEHLRALEKKGIIT 57 >ref|NP_040813.1|integrase Length = 289 Score = 47.8 bits (112), Expect = 9e-05 Identities = 38/184 (20%), Positives = 83/184 (45%), Gaps = 4/184 (2%) Frame = +2 Query: 34250 HDEVDRLLAAPDVRSAA--GIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVL-VARG 34420 HD+++ ++ +++ I ++ + LL +GLRVSE ++++++D++ + +V+ V Sbjct: 109 HDDLELIMTYTKNLNSSKNSITYKSFIRLLLDSGLRVSEALNIKISDMDFKNKVIRVLSS 168 Query: 34421 KGDKERIVPVGXXXXXXXXXXXXXXRERLLHGRRSKD-LFVTPRGGRMTRQGFAKILDXX 34597 K K+R P + L+ +D LF R T + K+ Sbjct: 169 KTRKQRYAPFSSFSLKYI--------KELIEVNPKRDYLFYNFIKDRQTNKNDIKLFYKR 220 Query: 34598 XXXXXXXXXXSPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLY 34777 H+ R +FA+ L+E G ++ +Q++ H+ + TT Y + + Y Sbjct: 221 LKKHLNLERIHTHRFRKTFASILIENGLNIDDLQKIFDHSRIETTIKYVQHNEKRALQEY 280 Query: 34778 DRFH 34789 +++ Sbjct: 281 KKYN 284 >ref|NP_803307.1|integrase Length = 401 Score = 47.0 bits (110), Expect = 1e-04 Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 22/167 (13%) Frame = +2 Query: 34316 AMLELLYATGLRVSELVSLQLNDVNLET----------RVLVARGKGDKERIVPVGXXXX 34465 ++LE+ TG+R+ EL +LQ D++L R+ +G G K+ + Sbjct: 218 SILEVQALTGMRIGELQALQEKDIDLLNKTINITGTIHRIKYEKGFGYKDTTKTISSKRS 277 Query: 34466 XXXXXXXXXXRERLLHGRRSKD-----------LFVTPRGGRMTRQGFAKILDXXXXXXX 34612 ++++ + +F T +G + A +L Sbjct: 278 ISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALN 337 Query: 34613 XXXXXSPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTT-QIYTHV 34750 + H RH+ T L+E L+A+ + +GH D TT +IYTHV Sbjct: 338 MNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHV 384 >ref|NP_536807.1|integrase Length = 337 Score = 46.6 bits (109), Expect = 2e-04 Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 3/208 (1%) Frame = +2 Query: 34154 HRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLLAAPDVRSAAGIRDRAMLELL 34333 + L + + T+ +P D + + L ++ RLLA D + ++ + Sbjct: 144 NELKSLRKWTAENPLDGVRLFKERETELAFLYERDIYRLLAECDNSRNPDLG--LIVRIC 201 Query: 34334 YATGLRVSELVSLQLNDVNLETRVLVARGKGDKERIVPVGXXXXXXXXXXXXXXRERLLH 34513 ATG R SE +L + V + ++ K K R VP+ Sbjct: 202 LATGARWSEAETLTQSQV-MPYKITFVNTKSKKNRTVPI--------------------- 239 Query: 34514 GRRSKDLF--VTPRGGRMTRQGFAKILDXXXXXXXXXXXXS-PHKLRHSFATHLLEGGAD 34684 SK+LF + + GR+ + + H LRH+FA+H + G + Sbjct: 240 ---SKELFDMLPKKRGRLFNDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGN 296 Query: 34685 LRAVQEMLGHADVSTTQIYTHVDRTHVK 34768 + ++E+LGH+ + T Y H +H++ Sbjct: 297 ILVLKEILGHSTIEMTMRYAHFAPSHLE 324 >ref|NP_043466.1|integrase Length = 337 Score = 46.6 bits (109), Expect = 2e-04 Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 3/208 (1%) Frame = +2 Query: 34154 HRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLLAAPDVRSAAGIRDRAMLELL 34333 + L + + T+ +P D + + L ++ RLLA D + ++ + Sbjct: 144 NELKSLRKWTTENPLDGVRLFKERETELAFLYERDIYRLLAECDNSRNPDLG--LIVRIC 201 Query: 34334 YATGLRVSELVSLQLNDVNLETRVLVARGKGDKERIVPVGXXXXXXXXXXXXXXRERLLH 34513 ATG R SE +L + V + ++ K K R VP+ Sbjct: 202 LATGARWSEAETLTQSQV-MPYKITFTNTKSKKNRTVPI--------------------- 239 Query: 34514 GRRSKDLF--VTPRGGRMTRQGFAKILDXXXXXXXXXXXXS-PHKLRHSFATHLLEGGAD 34684 SK+LF + + GR+ + + H LRH+FA+H + G + Sbjct: 240 ---SKELFDMLPKKRGRLFNDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGN 296 Query: 34685 LRAVQEMLGHADVSTTQIYTHVDRTHVK 34768 + ++E+LGH+ + T Y H +H++ Sbjct: 297 ILVLKEILGHSTIEMTMRYAHFAPSHLE 324 >ref|NP_075464.1|integrase Length = 401 Score = 46.2 bits (108), Expect = 3e-04 Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 22/167 (13%) Frame = +2 Query: 34316 AMLELLYATGLRVSELVSLQLNDVNLET----------RVLVARGKGDKERIVPVGXXXX 34465 ++LE+ TG+R+ EL +LQ D++L R+ G G K+ + Sbjct: 218 SILEVQALTGMRIGELQALQEKDIDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRS 277 Query: 34466 XXXXXXXXXXRERLLHGRRSKD-----------LFVTPRGGRMTRQGFAKILDXXXXXXX 34612 ++++ + +F T +G + A +L Sbjct: 278 ISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALN 337 Query: 34613 XXXXXSPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTT-QIYTHV 34750 + H RH+ T L+E L+A+ + +GH D TT +IYTHV Sbjct: 338 MNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHV 384 >ref|NP_058467.1|integrase Length = 401 Score = 46.2 bits (108), Expect = 3e-04 Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 22/167 (13%) Frame = +2 Query: 34316 AMLELLYATGLRVSELVSLQLNDVNLET----------RVLVARGKGDKERIVPVGXXXX 34465 ++LE+ TG+R+ EL +LQ D++L R+ G G K+ + Sbjct: 218 SILEVQALTGMRIGELQALQEKDIDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRS 277 Query: 34466 XXXXXXXXXXRERLLHGRRSKD-----------LFVTPRGGRMTRQGFAKILDXXXXXXX 34612 ++++ + +F T +G + A +L Sbjct: 278 ISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALN 337 Query: 34613 XXXXXSPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTT-QIYTHV 34750 + H RH+ T L+E L+A+ + +GH D TT +IYTHV Sbjct: 338 MNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHV 384 >ref|NP_958084.1|gp27 Length = 349 Score = 46.2 bits (108), Expect = 3e-04 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 5/156 (3%) Frame = +2 Query: 34319 MLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGDKERIVPVGXXXXXXXXXXXXXXR 34498 ++E+ ATG R SE L ++ ++ + KG K R VP+ Sbjct: 201 IVEICLATGARWSEAERLTRPQLS-PYKLTFTKTKGKKNRTVPI---------------- 243 Query: 34499 ERLLHGRRSKDLF--VTPRGGRMTR---QGFAKILDXXXXXXXXXXXXSPHKLRHSFATH 34663 +K L+ ++ R GRM + Q F K+L H LRH+F H Sbjct: 244 --------TKWLYEKLSTRQGRMFKPCYQEFKKML--LLTDIELTEGQKTHVLRHTFGAH 293 Query: 34664 LLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKR 34771 + G ++ +Q++LGHA++ T Y+H H+++ Sbjct: 294 FMMNGGNILVLQKILGHANIRETMKYSHFAPDHLEQ 329 >ref|NP_599066.1|repressor Length = 224 Score = 45.4 bits (106), Expect = 4e-04 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 2/86 (2%) Frame = -2 Query: 16993 YGLRVQGDSMIGDGILPGDYVFVKKQLNADDGEIVVAMIDD--EATVKRVYFEGDRVRFQ 16820 Y LRV GDSMI D PGD +FV ++ A G+ V+A++ D E T KR+ +G + + Sbjct: 130 YILRVIGDSMI-DEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQRYLK 188 Query: 16819 PSNPRMAPIYVRHSDFRSTMILGVVV 16742 NP Y++ + + I+G V+ Sbjct: 189 ALNPNWPEPYIKING--NCSIIGTVI 212 >ref|NP_795429.1|putative integrase Length = 362 Score = 45.1 bits (105), Expect = 6e-04 Identities = 58/229 (25%), Positives = 93/229 (40%), Gaps = 8/229 (3%) Frame = +2 Query: 34127 RALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLLAAPD-VRSAAG 34303 + L +R++ L + +P+ I P+ R+ + +D+L + V Sbjct: 126 KILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFLELVEKTDN 185 Query: 34304 IRDRAMLELLYATGLRVSELVSLQLNDVN---LETRVLVARGKGDKERIVPVGXXXXXXX 34474 I A+ LL TG+R EL++L +D+N L V R + E V Sbjct: 186 IEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTKTKSSDRLI 245 Query: 34475 XXXXXXXRERL-LHGR--RSKDLFVTPRGGRMTRQGFAKILDXXXXXXXXXXXXSPHKLR 34645 L LH S +F + GG MT K L + H R Sbjct: 246 SLDDETLEILLELHETFPTSTLMFQSESGGIMTPSLPRKWL-LQIIKGTDLPQITIHGFR 304 Query: 34646 HSFATHLLEGGADLRAVQEMLGHADVSTT-QIYTHVDRTHVKRLYDRFH 34789 H+ A+ L E G L+ VQ LGH D+ TT +YTH+ ++ + + +F+ Sbjct: 305 HTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAIDDIGTKFN 353 >ref|NP_663635.1|putative integrase Length = 359 Score = 44.3 bits (103), Expect = 0.001 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVSTT-QIYTHVDRTHVKRLYDRF 34786 H RH+ A+ L E G L+ VQ LGHAD+ TT IYTH+ + ++ +F Sbjct: 302 HAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHITKFAKDKIGQQF 353 >ref|NP_076635.1|integrase Length = 359 Score = 44.3 bits (103), Expect = 0.001 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVSTT-QIYTHVDRTHVKRLYDRF 34786 H RH+ A+ L E G L+ VQ LGHAD+ TT IYTH+ + ++ +F Sbjct: 302 HAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHITKFAKDKIGQQF 353 >ref|NP_510900.1|similar to phage phi PVL repressor Length = 238 Score = 43.9 bits (102), Expect = 0.001 Identities = 26/82 (31%), Positives = 47/82 (57%) Frame = -2 Query: 16987 LRVQGDSMIGDGILPGDYVFVKKQLNADDGEIVVAMIDDEATVKRVYFEGDRVRFQPSNP 16808 L+V GDSM G+ +FV+K N +G+I + +I++EA VK+V+ E DR+ N Sbjct: 159 LKVNGDSM-EPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNK 217 Query: 16807 RMAPIYVRHSDFRSTMILGVVV 16742 + ++ ++ S ++G V+ Sbjct: 218 KYRDLHFYRNE--SVRLVGKVI 237 >ref|NP_490644.1|integrase Length = 389 Score = 43.9 bits (102), Expect = 0.001 Identities = 31/123 (25%), Positives = 57/123 (46%) Frame = +2 Query: 34049 ERVGRSEIQAHLAELVRRGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGR 34228 + + +IQ + + L ++ +S +R + RL ++ DP+D I P Sbjct: 113 DSIDHLDIQDWVQNTLMPKLHNKTVREIVSNLRQIFRLYRTRNRSAHDPTDGIVITLPDA 172 Query: 34229 RLPGLLSHDEVDRLLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVL 34408 P + +E+D +L R I + + E + +G RVSE ++L DV+L+T + Sbjct: 173 DDPDPFTREEIDLILGTETAR----IGELNLAEFMIWSGPRVSEAIALAWEDVDLDTGTV 228 Query: 34409 VAR 34417 V R Sbjct: 229 VFR 231 >ref|NP_076752.1|integrase Length = 394 Score = 43.1 bits (100), Expect = 0.002 Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 15/171 (8%) Frame = +2 Query: 34319 MLELLYATGLRVSELVSLQLNDVNLET-----------RVLVARGKGDKE-RIVPVGXXX 34462 + LL A+GLR+ E V+L +D++ +T V+ + K DK RIV + Sbjct: 219 LCRLLVASGLRIGEAVALSWSDIDFKTGSVSVSKTTLRAVIQSTPKTDKSNRIVLIDSKA 278 Query: 34463 XXXXXXXXXXXRERLLHGRRSKDLFVTPR--GGRMTRQGFAKILDXXXXXXXXXXXXSPH 34636 + + + K V P GG + Q L H Sbjct: 279 VEVLKHWELFQAKYFMSIGKGKQELVFPNRTGGVLDYQTMRPFL-IKWLRACQLPQVGFH 337 Query: 34637 KLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTHVDRTHVKRLYDRF 34786 RHS A+ LL + +QE LGHA + T Y+H++ + + +RF Sbjct: 338 GFRHSHASLLLNADVPYKEIQERLGHASIKMTMDTYSHLESDNKIKAVERF 388 >ref|NP_795660.1|putative integrase Length = 362 Score = 42.7 bits (99), Expect = 0.003 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +2 Query: 34628 SPHKLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTHVDRTHVKRLYDR 34783 +PH RH+ A+ L E G + QE LGHA +S T +YTH+ + + ++ Sbjct: 303 NPHGFRHTHASLLFEAGVPAKLAQERLGHAKISITMDLYTHLSKNQTDNVAEK 355 >ref|YP_006379.1|CI Length = 229 Score = 42.7 bits (99), Expect = 0.003 Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 15/149 (10%) Frame = -2 Query: 17128 ARPGSRMIEIPIVG-RVAAGMPILAQERVE-----DTVQVDAFLLGTNKKVYGLR---VQ 16976 A P S +I I+ V+AG ++ +E VE + Q DA + +K +R V+ Sbjct: 80 ASPSSNTFKIDILDLEVSAGPGVINREFVEILRSVEYSQDDARHMFDGRKAENIRIINVR 139 Query: 16975 GDSMIGDGILPGDYVFVKKQLNADDGEIVVAMI-DDEATVKRVYFEGDRVRFQPSNPR-M 16802 GDSM G I PGD +FV + DG+ + A + DD A VKR+ D++ N Sbjct: 140 GDSMSGT-IEPGDLLFVDVSIKNFDGDGIYAFLYDDTAHVKRLQKMKDKLLVISDNKSYS 198 Query: 16801 APIYVRHSDFRSTMILGVVVG----VYRK 16727 A + + + G V+G YRK Sbjct: 199 AWDPIERDEMNRVFVFGKVIGSMPQTYRK 227 >ref|NP_835522.1|similar to repressor Length = 237 Score = 42.4 bits (98), Expect = 0.004 Identities = 26/82 (31%), Positives = 46/82 (56%) Frame = -2 Query: 16987 LRVQGDSMIGDGILPGDYVFVKKQLNADDGEIVVAMIDDEATVKRVYFEGDRVRFQPSNP 16808 L+V GDSM G+ +FV+K N +G+I + +I++EA VK+V+ E DR+ N Sbjct: 158 LKVNGDSM-EPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNK 216 Query: 16807 RMAPIYVRHSDFRSTMILGVVV 16742 ++ ++ S ++G V+ Sbjct: 217 DYDDLHFYRNE--SVRLIGKVI 236 >ref|NP_803311.1|cI-like repressor Length = 237 Score = 42.4 bits (98), Expect = 0.004 Identities = 26/82 (31%), Positives = 46/82 (56%) Frame = -2 Query: 16987 LRVQGDSMIGDGILPGDYVFVKKQLNADDGEIVVAMIDDEATVKRVYFEGDRVRFQPSNP 16808 L+V GDSM G+ +FV+K N +G+I + +I++EA VK+V+ E DR+ N Sbjct: 158 LKVNGDSM-EPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNK 216 Query: 16807 RMAPIYVRHSDFRSTMILGVVV 16742 ++ ++ S ++G V+ Sbjct: 217 DYDDLHFYRNE--SVRLIGKVI 236 >ref|NP_817384.1|gp46 Length = 436 Score = 42.4 bits (98), Expect = 0.004 Identities = 19/42 (45%), Positives = 24/42 (57%) Frame = +2 Query: 34631 PHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDR 34756 PH RH+ +T L G D + E+LGHA V +IY H DR Sbjct: 369 PHNSRHTTSTLLRAAGVDEQTRMEILGHASVDAQRIYAHADR 410 >ref|NP_795489.1|putative integrase Length = 380 Score = 42.0 bits (97), Expect = 0.005 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVSTT-QIYTHVDR 34756 H RH+ + L E L+++ E +GHAD TT QIYTHV + Sbjct: 326 HIFRHTLISRLAENNVPLKSIMERVGHADAKTTAQIYTHVTK 367 >ref|NP_862840.1|gp1 Length = 375 Score = 42.0 bits (97), Expect = 0.005 Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 15/158 (9%) Frame = +2 Query: 34319 MLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGDKE-------------RIVPVGXX 34459 M+ +L TG+R EL +LQL +++ E + G D R + V Sbjct: 201 MVTVLALTGMRYGELTALQLKNIDFENNKIEITGNFDSINKIKTLPKTAKSIRTILVSDA 260 Query: 34460 XXXXXXXXXXXXRERLLHGRRSKDLF-VTPRGGRMTRQGFAKILDXXXXXXXXXXXXSPH 34636 ER + +F + +T F +I+ S H Sbjct: 261 VIKAIQRQVVRLTERYQPLKDDDYIFCLEVWNSPITLPSFIQIIKKYGAKAGIEKNLSSH 320 Query: 34637 KLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTH 34747 RHS ++L E G ++++ + +GHA+ T +IY+H Sbjct: 321 IFRHSHISYLAEAGLPIKSIMDRVGHANAKMTLEIYSH 358 >ref|NP_945240.1|integrase Length = 380 Score = 42.0 bits (97), Expect = 0.005 Identities = 45/194 (23%), Positives = 73/194 (37%), Gaps = 23/194 (11%) Frame = +2 Query: 34244 LSHDEVDRLLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARG- 34420 L DE+ +LL R + R + E + G R+ E V ++ ++V+ E+ L G Sbjct: 175 LEEDEI-KLLLKELYRRPSTYRIGLLSEFMSLNGCRIGEAVGIEPHNVDYESNTLQLHGT 233 Query: 34421 --------KGDKERIVPVGXXXXXXXXXXXXXXRERLLH--------GRRSKDL---FVT 34543 KG+K + E + R KD+ F T Sbjct: 234 YDHTNGYQKGEKTSPKTLASYRETVMTTREKEILEEMEFMNELEKNTNPRYKDMGFIFTT 293 Query: 34544 PRGGRMTRQGFAKILDXXXXXXXXXXXXS--PHKLRHSFATHLLEGGADLRAVQEMLGHA 34717 G + F L + H RH+ + L E L+A+ + +GH+ Sbjct: 294 KNGVPLQTNSFNLALKKANERLETPIQKNLTSHIFRHTLVSRLAENNVPLKAIMDRVGHS 353 Query: 34718 DV-STTQIYTHVDR 34756 D +TTQIYTH+ + Sbjct: 354 DAKTTTQIYTHITK 367 >ref|NP_803258.1|cI-like repressor Length = 239 Score = 41.6 bits (96), Expect = 0.006 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 3/128 (2%) Frame = -2 Query: 17116 SRMIEIPIVGRVAAGMPILAQERVEDTVQVDAFLLGT---NKKVYGLRVQGDSMIGDGIL 16946 S+++ G AG + +E +D + + F + + + V GDSM + Sbjct: 117 SKLVSYIACGATGAG---IGEELYDDILHEEVFFKEDETPSNADFCILVNGDSM-EPMLK 172 Query: 16945 PGDYVFVKKQLNADDGEIVVAMIDDEATVKRVYFEGDRVRFQPSNPRMAPIYVRHSDFRS 16766 G Y F+KK+ + DG I + ++D + +KRV D + NP+ I V + F + Sbjct: 173 QGTYAFIKKEDSIKDGTIALVVLDGVSLIKRVDICEDYINLVSLNPKYDDIKV--ASFSN 230 Query: 16765 TMILGVVV 16742 ++G VV Sbjct: 231 IKVMGKVV 238 >ref|NP_510895.1|similar to phage phi 11 integrase Length = 349 Score = 41.6 bits (96), Expect = 0.006 Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 18/164 (10%) Frame = +2 Query: 34313 RAMLELLYATGLRVSELVSLQLNDVN-------------LETRVLVARGKGDK-ERIVPV 34450 R + L++ TGLR+ E ++L D N + R + R K D E IVP+ Sbjct: 182 RELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDSSEDIVPL 241 Query: 34451 GXXXXXXXXXXXXXXRE-RLLHGRRSKDLF--VTPRGGRMTRQGFAKILDXXXXXXXXXX 34621 +E RS +F + P+ ++ F K Sbjct: 242 PKFINTMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNI------ 295 Query: 34622 XXSPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQ-IYTHV 34750 H LRHS+A++L G D+ +Q ++ HA ++ T Y+H+ Sbjct: 296 ----HALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHL 335 >ref|NP_624303.1|integrase fragment Length = 112 Score = 41.6 bits (96), Expect = 0.006 Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQ-IYTHVDRT 34759 H LRHS A++LL G ++ V E LGH++V T+ +Y+H+ +T Sbjct: 54 HALRHSHASYLLSKGVSIQYVSERLGHSNVGITENVYSHLLKT 96 >ref|NP_438114.1|integrase-like protein Length = 365 Score = 41.2 bits (95), Expect = 0.008 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +2 Query: 34628 SPHKLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTHVDRTHVKRLYDR 34783 +PH RH+ A+ L E G + QE LGHA ++ T +YTH+ + + D+ Sbjct: 306 TPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLSKKSKDNVADK 358 >ref|NP_795541.1|putative integrase Length = 384 Score = 41.2 bits (95), Expect = 0.008 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +2 Query: 34628 SPHKLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTHVDRTHVKRLYDR 34783 +PH RH+ A+ L E G + QE LGHA ++ T +YTH+ + + D+ Sbjct: 325 TPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLSKKSKDNVADK 377 >ref|NP_803358.1|cI-like repressor Length = 256 Score = 41.2 bits (95), Expect = 0.008 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%) Frame = -2 Query: 17116 SRMIEIPIVGRVAAGMPILAQERVEDTVQVDAFLLGT---NKKVYGLRVQGDSMIGDGIL 16946 S+++ G AG + +E +D + + F + + + V GDSM + Sbjct: 134 SKLVSYIACGATGAG---IGEELYDDILHEEVFFKEDETPSNADFCILVNGDSM-EPMLK 189 Query: 16945 PGDYVFVKKQLNADDGEIVVAMIDDEATVKRVYFEGDRVRFQPSNPRMAPIYVRHSDFRS 16766 G Y F+KK+ + DG I + ++D + +KRV D + NP+ I V + F Sbjct: 190 QGTYAFIKKEDSIKDGTIALVVLDGVSLIKRVDICEDYINLVSLNPKYDDIKV--ASFSD 247 Query: 16765 TMILGVVV 16742 ++G VV Sbjct: 248 IKVMGKVV 255 >ref|NP_058469.1|repressor Length = 256 Score = 41.2 bits (95), Expect = 0.008 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%) Frame = -2 Query: 17116 SRMIEIPIVGRVAAGMPILAQERVEDTVQVDAFLLGT---NKKVYGLRVQGDSMIGDGIL 16946 S+++ G AG + +E +D + + F + + + V GDSM + Sbjct: 134 SKLVSYIACGATGAG---IGEELYDDILHEEVFFKEDETPSNADFCILVNGDSM-EPMLK 189 Query: 16945 PGDYVFVKKQLNADDGEIVVAMIDDEATVKRVYFEGDRVRFQPSNPRMAPIYVRHSDFRS 16766 G Y F+KK+ + DG I + ++D + +KRV D + NP+ I V + F Sbjct: 190 QGTYAFIKKEDSIKDGTIALVVLDGVSLIKRVDICEDYINLVSLNPKYDDIKV--ASFSD 247 Query: 16765 TMILGVVV 16742 ++G VV Sbjct: 248 IKVMGKVV 255 >ref|YP_164276.1|LexA-like protein Length = 69 Score = 41.2 bits (95), Expect = 0.008 Identities = 22/61 (36%), Positives = 32/61 (52%) Frame = -2 Query: 17386 QLEVLRFIASQIEDHGYPPTIREIGEALDIRSTNGVNDHLKALERKGYLSRDPVKSRALI 17207 Q E L I + + GY PT+ E+ +R + L ALE KGY+ RDP +R++ Sbjct: 9 QNETLGHIRAFWAEKGYAPTVAELAAKAGVRQF-AIQQRLTALENKGYIQRDPKVARSIR 67 Query: 17206 P 17204 P Sbjct: 68 P 68 >ref|NP_818386.1|gp85 Length = 424 Score = 41.2 bits (95), Expect = 0.008 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Frame = +2 Query: 34628 SPHKLRHSFATHLLEGGADLRAVQEMLGHAD-VSTTQIYTHV 34750 +PH LRH+ A+ + GA+++AVQ +LGHA V T +Y H+ Sbjct: 359 TPHDLRHTCASLAISSGANVKAVQNLLGHATAVMTLDLYGHL 400 >ref|NP_958626.1|77ORF011 Length = 255 Score = 41.2 bits (95), Expect = 0.008 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%) Frame = -2 Query: 17116 SRMIEIPIVGRVAAGMPILAQERVEDTVQVDAFLLGT---NKKVYGLRVQGDSMIGDGIL 16946 S+++ G AG + +E +D + + F + + + V GDSM + Sbjct: 133 SKLVSYIACGATGAG---IGEELYDDILHEEVFFKEDETPSNADFCILVNGDSM-EPMLK 188 Query: 16945 PGDYVFVKKQLNADDGEIVVAMIDDEATVKRVYFEGDRVRFQPSNPRMAPIYVRHSDFRS 16766 G Y F+KK+ + DG I + ++D + +KRV D + NP+ I V + F Sbjct: 189 QGTYAFIKKEDSIKDGTIALVVLDGVSLIKRVDICEDYINLVSLNPKYDDIKV--ASFSD 246 Query: 16765 TMILGVVV 16742 ++G VV Sbjct: 247 IKVMGKVV 254 >ref|NP_061591.2|integrase Length = 348 Score = 40.0 bits (92), Expect = 0.018 Identities = 17/46 (36%), Positives = 32/46 (69%), Gaps = 3/46 (6%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTHV--DRTH 34762 H LRHS+A++L+ G D+ + E++ H++++ T Q Y+H+ D+ H Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKH 341 >ref|NP_803254.1|integrase Length = 348 Score = 40.0 bits (92), Expect = 0.018 Identities = 17/46 (36%), Positives = 32/46 (69%), Gaps = 3/46 (6%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTHV--DRTH 34762 H LRHS+A++L+ G D+ + E++ H++++ T Q Y+H+ D+ H Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKH 341 >ref|NP_071803.1|putative integrase Length = 402 Score = 40.0 bits (92), Expect = 0.018 Identities = 71/327 (21%), Positives = 119/327 (36%), Gaps = 44/327 (13%) Frame = +2 Query: 33929 DLFLAHVRVEKGLAENSVEAYGRDLRRY--------------LEHLDELGVDAWERVGRS 34066 D L + + E ++E Y ++ Y E ++ GV +R R Sbjct: 16 DPLLQEFIFSRNIKEKTIETYIAAIQHYSQVTGKTITELIEEAEKEEDSGVKRRKRKIRQ 75 Query: 34067 EIQAHLAELVRRGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRL-PGL 34243 ++ L +G+ + +S I++L+ EI+ P+ ++ P Sbjct: 76 YFLKYIQHLQDQGVKGSTIRLYISKIKALYN------------EYEIDPPKITYKIRPEN 123 Query: 34244 LSHDEVDRLLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLV---- 34411 S D++ L +V R++AM+ L +G+ +EL L + D N V Sbjct: 124 KSMDDLINLHEIKNVLDNTHPREKAMILLHLTSGMGSAELRRLNVVDYNKAIGFNVLGED 183 Query: 34412 ---ARGKGDKERIVPVGXXXXXXXXXXXXXX-------------RERLLHG---RRSKDL 34534 AR + E IV V R R L+G + ++ L Sbjct: 184 YEDARKRIQDEEIVGVWKVNRVKTGMPYVTFSTPEANIKILDYLRYRRLNGGPLKETQPL 243 Query: 34535 FVTPRGGRMTRQGFAKILDXXXXXXXXXXXXS------PHKLRHSFATHLLEGGADLRAV 34696 F T G R+ +A I + + HKLR F T L + G D A+ Sbjct: 244 FSTQNGDRLKPITYANIFNRLNDRFYLGRDAAGNRRLTSHKLRKLFTTILYKEGMDKLAI 303 Query: 34697 QEMLGHADVSTTQIYTHVDRTHVKRLY 34777 +LGH T+ Y V+ H++R Y Sbjct: 304 DWLLGHKVNPVTEAYFKVNIDHLEREY 330 >ref|NP_958701.1|repressor protein cI Length = 223 Score = 40.0 bits (92), Expect = 0.018 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 6/93 (6%) Frame = -2 Query: 16999 KVYGLRVQGDSMIGDGILP----GDYVFVKKQLNADDGEIVVAMIDDE--ATVKRVYFEG 16838 + + L V+G+SM G P GD +FV + A G+ VVA ++ + AT K+ E Sbjct: 128 RTFCLTVEGESMKNPGARPSYEPGDVIFVDPDVAAKPGDRVVARLESQVAATFKQYLEED 187 Query: 16837 DRVRFQPSNPRMAPIYVRHSDFRSTMILGVVVG 16739 R + NP P Y+ + I GVV+G Sbjct: 188 GRKLLKALNPDWQPRYIPING--DATICGVVIG 218 >ref|NP_996594.1|repressor protein cI Length = 223 Score = 40.0 bits (92), Expect = 0.018 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 6/93 (6%) Frame = -2 Query: 16999 KVYGLRVQGDSMIGDGILP----GDYVFVKKQLNADDGEIVVAMIDDE--ATVKRVYFEG 16838 + + L V+G+SM G P GD +FV + A G+ VVA ++ + AT K+ E Sbjct: 128 RTFCLTVEGESMKNPGARPSYEPGDVIFVDPDVAAKPGDRVVARLESQVAATFKQYLEED 187 Query: 16837 DRVRFQPSNPRMAPIYVRHSDFRSTMILGVVVG 16739 R + NP P Y+ + I GVV+G Sbjct: 188 GRKLLKALNPDWQPRYIPING--DATICGVVIG 218 >ref|NP_996642.1|repressor protein cI Length = 223 Score = 40.0 bits (92), Expect = 0.018 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 6/93 (6%) Frame = -2 Query: 16999 KVYGLRVQGDSMIGDGILP----GDYVFVKKQLNADDGEIVVAMIDDE--ATVKRVYFEG 16838 + + L V+G+SM G P GD +FV + A G+ VVA ++ + AT K+ E Sbjct: 128 RTFCLTVEGESMKNPGARPSYEPGDVIFVDPDVAAKPGDRVVARLESQVAATFKQYLEED 187 Query: 16837 DRVRFQPSNPRMAPIYVRHSDFRSTMILGVVVG 16739 R + NP P Y+ + I GVV+G Sbjct: 188 GRKLLKALNPDWQPRYIPING--DATICGVVIG 218 >ref|NP_680502.1|integrase Length = 385 Score = 39.7 bits (91), Expect = 0.024 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTHV 34750 H LRH+ ++LL G D++ V LGH +V TT+IYTH+ Sbjct: 330 HGLRHTHGSYLLYKGLDIQYVSHRLGHENVGITTKIYTHL 369 >ref|NP_050999.1|P38 Length = 390 Score = 39.7 bits (91), Expect = 0.024 Identities = 57/258 (22%), Positives = 99/258 (38%), Gaps = 27/258 (10%) Frame = +2 Query: 34097 RRGLS-PRSQARALS-AIRSLHRLLAAERVTSAD-------PSDEIESPRPGRRLPGLLS 34249 R+G+ P QA+ +S A ++ H L + SA+ S I+ P + L Sbjct: 128 RKGIEIPAYQAKEVSIATKAKHLALLKSMMKSAERDWKWIEKSPVIKVPSAREKRIRWLE 187 Query: 34250 HDEVDRLL-AAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKG 34426 DE +RL+ P+ R+ +E ATGLR S +++L + ++++ +V + Sbjct: 188 PDEAERLINECPEPL-------RSTVEFALATGLRRSNIINLAWSQIDMQRKVAWIEPEN 240 Query: 34427 DKERIVPVGXXXXXXXXXXXXXXRERLLHGRRSKDLFVTPRGGRMTRQGFAKILDXXXXX 34606 K G R L G K +FV + + + Sbjct: 241 SKS-----GKAIGVALNDTACCILTRQL-GNHQKWVFVHTMSAKRSDGSQTNSIRKMRVD 294 Query: 34607 XXXXXXXSP----------HKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDR 34756 + H LRH++A+ L++ G L +QEM G V + Y H+ Sbjct: 295 SNTAWRAALKRAGIENFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESVEMVRRYAHLAS 354 Query: 34757 TH-------VKRLYDRFH 34789 H + ++DRF+ Sbjct: 355 NHLTEHAKQIDGVFDRFN 372 >ref|NP_061595.1|repressor Length = 236 Score = 39.3 bits (90), Expect = 0.031 Identities = 26/82 (31%), Positives = 43/82 (52%) Frame = -2 Query: 16987 LRVQGDSMIGDGILPGDYVFVKKQLNADDGEIVVAMIDDEATVKRVYFEGDRVRFQPSNP 16808 L+V GDSM G +F++K DG+I V +I+ +A VK+VY E +R+ N Sbjct: 157 LKVNGDSM-EPLFKNGQIIFIEKSHTIKDGQIGVFIINGDAYVKKVYVEDNRLTLVSLNK 215 Query: 16807 RMAPIYVRHSDFRSTMILGVVV 16742 + ++ D S ++G V+ Sbjct: 216 KYKDLH--FYDNESVRLVGKVI 235 >ref|NP_695147.1|integrase Length = 391 Score = 39.3 bits (90), Expect = 0.031 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVSTT-QIYTHV 34750 H LRH+ A+ LL G D+ V + LGH D+ TT YTHV Sbjct: 328 HALRHTHASLLLYEGRDISYVSKRLGHKDIMTTYNTYTHV 367 >ref|NP_046921.1|gp26 Length = 128 Score = 38.9 bits (89), Expect = 0.041 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = -2 Query: 17074 GMPILAQERVEDTVQVDAFLLGTNKKVYGLRVQGDSMIGDGILPGDYVFVKKQLNADDGE 16895 G P AQ+ VE+ + +D LL Y +R G + +GIL G + V DG Sbjct: 2 GFPSPAQDYVEERISLDKLLLTRPSATYFMRA-GATHYQEGILYGALLVVDASRTPCDGS 60 Query: 16894 IVVAMIDDEATVKR 16853 ++V +D E +KR Sbjct: 61 LLVCRMDGELRIKR 74 >ref|NP_059606.1|C2 Length = 216 Score = 38.5 bits (88), Expect = 0.053 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%) Frame = -2 Query: 16993 YGLRVQGDSMI---GDGILPGDYVFVKKQLNADDGEIVVAMID--DEATVKRVYFEGDRV 16829 + L VQGDSM G I G + V ++ +G++VVA ++ +EAT K++ + R Sbjct: 124 FWLDVQGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEATFKKLVMDAGRK 183 Query: 16828 RFQPSNPRMAPIYVRHSDFRSTMILGVVV 16742 +P NP+ I + + I+GVVV Sbjct: 184 FLKPLNPQYPMIEIN----GNCKIIGVVV 208 >ref|NP_076696.1|integrase Length = 377 Score = 38.5 bits (88), Expect = 0.053 Identities = 34/181 (18%), Positives = 72/181 (39%), Gaps = 24/181 (13%) Frame = +2 Query: 34319 MLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGD--KERIVPVGXXXXXXXXXXXXX 34492 M+ + TG+R SEL+ L ++V+ E + + D K P Sbjct: 195 MIYIAAMTGMRFSELLGLTWDNVDFEKGQIYVKRTWDIYKNNFAPTKNDQSVRFLAIDSS 254 Query: 34493 XRERLLHGRRSKD--------------LFVTPRGGRMTRQGFAKILDXXXXXXXXXXXXS 34630 + +++ + ++ +F + G +T K L + Sbjct: 255 TMQVMINYKEQQEKLLKRLEIEPEHPFVFYNIKNGLITNNSLNKQLRNMCKKLGFKKIIT 314 Query: 34631 PHKLRHSFATHLLEGGADLRAVQEMLGHADVSTT-QIYTHV-------DRTHVKRLYDRF 34786 H LRH+ A+ +L G ++ V + LGH+ ++ T +Y+H+ D ++K+++ Sbjct: 315 CHGLRHTHASTMLYKGINILYVSKRLGHSSLNVTMSVYSHILKELEEKDNENIKKIFSEI 374 Query: 34787 H 34789 + Sbjct: 375 N 375 >ref|NP_511007.1|integrase Length = 384 Score = 38.1 bits (87), Expect = 0.069 Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 20/178 (11%) Frame = +2 Query: 34313 RAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGD-------------KERIVPVG 34453 RA++ L TG+R E+++L D+N R + D K R++ + Sbjct: 187 RAVIFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTFIDTKTKKSRVIYID 246 Query: 34454 XXXXXXXXXXXXXXRERLLHGRRSKDL---FVTPRGGRMTRQGFAKILDXXXXXXXXXXX 34624 + + L F+T + K L Sbjct: 247 NSTAQYLHSYLNWHTDYMKEHAIKNPLMLLFITYHNKPVDNASCNKALKKICSTINSEPV 306 Query: 34625 XSPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTT-QIYTHVD---RTHVKRLYDRF 34786 + HKLRH+ +E G D+ V + LGH D++TT + Y+H+ R H + D F Sbjct: 307 -TLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLSSNLRQHNQSKVDAF 363 >ref|NP_076801.1|integrase Length = 382 Score = 38.1 bits (87), Expect = 0.069 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Frame = +2 Query: 34628 SPHKLRHSFATHLLEGGADLRAVQEMLGHAD--VSTTQIYTHVDRTHVKRLYD 34780 S H RH+ ++L E L+A+ + +GH D +TT IYTHV + D Sbjct: 324 SSHIFRHTLISYLAENNVPLKAIVDRVGHKDGGKTTTAIYTHVTENMKSSIID 376 >ref|NP_076573.1|integrase Length = 374 Score = 38.1 bits (87), Expect = 0.069 Identities = 57/276 (20%), Positives = 98/276 (35%), Gaps = 26/276 (9%) Frame = +2 Query: 34001 LRRYLEH--LDELGVDAWERVGRSEIQAHLAELVRRGLSPRSQARALSAIRS--LHRLLA 34168 L+ Y+ + + E+ +++R + H A+ +G R +A I L + Sbjct: 91 LKTYMPNVLISEITASSYQRALNKFAETH-AKASTKGFHTRVRASIQPLIEEGRLQKDFT 149 Query: 34169 AERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLLAAPDVRSAAGIRDRAMLELLYATGL 34348 V + +D+ E + ++ DE +L+ R ML ++ TG+ Sbjct: 150 TRAVVKGNGNDKAEQDK-------FVNFDEYKQLVDYFRNRLNPNYSSPTMLFIISITGM 202 Query: 34349 RVSELVSLQLNDVNLETRVLVARGK--------GDKERIVPVGXXXXXXXXXXXXXXRER 34504 R SE L +D++ + R G K+ G ++ Sbjct: 203 RASEAFGLVWDDIDFNNNTIKCRRTWNYRNKVGGFKKPKTDAGIRDIVIDDESMQLLKD- 261 Query: 34505 LLHGRRSKDLFVT-------------PRGGRMTRQGFAKILDXXXXXXXXXXXXSPHKLR 34645 + K LF + P +T LD + H LR Sbjct: 262 --FREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLDHALKKLNISTPLTVHGLR 319 Query: 34646 HSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTHV 34750 H+ A+ LL G D+ V + LGHA V+ T Q Y H+ Sbjct: 320 HTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI 355 >ref|YP_164382.1|integrase Length = 369 Score = 38.1 bits (87), Expect = 0.069 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +2 Query: 34628 SPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTT-QIYTHV 34750 S H LRH+ A+ LL G + V E LGHAD+ TT Y H+ Sbjct: 307 SMHGLRHTHASVLLYKGVSIYYVSERLGHADIETTMNEYAHI 348 >ref|NP_116524.1|integrase Length = 374 Score = 37.7 bits (86), Expect = 0.091 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTHV 34750 H LRH+ A+ LL G D+ V + LGHA V+ T Q Y H+ Sbjct: 316 HGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI 355 >ref|NP_108680.1|integrase Length = 374 Score = 37.7 bits (86), Expect = 0.091 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTHV 34750 H LRH+ A+ LL G D+ V + LGHA V+ T Q Y H+ Sbjct: 316 HGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI 355 >ref|NP_695029.1|Integrase Length = 374 Score = 37.7 bits (86), Expect = 0.091 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTHV 34750 H LRH+ A+ LL G D+ V + LGHA V+ T Q Y H+ Sbjct: 316 HGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI 355 >ref|NP_996675.1|integrase Length = 374 Score = 37.7 bits (86), Expect = 0.091 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTHV 34750 H LRH+ A+ LL G D+ V + LGHA V+ T Q Y H+ Sbjct: 316 HGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHI 355 >ref|YP_025047.1|putative integrase Length = 389 Score = 37.7 bits (86), Expect = 0.091 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTHV 34750 H LRHS ++L+ G D+ + + LGH+DV+ T ++Y H+ Sbjct: 331 HGLRHSHVSYLISKGVDIYYISKRLGHSDVTITMKVYGHL 370 >ref|NP_695079.1|putative integrase Length = 359 Score = 37.0 bits (84), Expect = 0.15 Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTH 34747 H LRH++A++L+ DL +V ++LGH +++ T ++Y H Sbjct: 292 HSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEVYAH 330 >ref|NP_049990.1|integrase Length = 359 Score = 37.0 bits (84), Expect = 0.15 Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTH 34747 H LRH++A++L+ DL +V ++LGH +++ T ++Y H Sbjct: 292 HSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEVYAH 330 >ref|YP_006569.1|HumD Length = 129 Score = 36.2 bits (82), Expect = 0.26 Identities = 23/74 (31%), Positives = 35/74 (47%) Frame = -2 Query: 17074 GMPILAQERVEDTVQVDAFLLGTNKKVYGLRVQGDSMIGDGILPGDYVFVKKQLNADDGE 16895 G P A + VE + +D L+ Y +R DS +GIL G + V L DG Sbjct: 2 GFPSPAADYVESRISLDQQLIRHPSATYFMRA-ADSHHREGILQGALLVVDSSLTPVDGS 60 Query: 16894 IVVAMIDDEATVKR 16853 ++V ++ E +KR Sbjct: 61 LLVCAMEGEYRIKR 74 >ref|NP_835517.1|integrase Length = 345 Score = 35.8 bits (81), Expect = 0.34 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTHV 34750 H LRH+ ++LL G + + + LGH +++ TT +Y+H+ Sbjct: 287 HALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHL 326 >ref|NP_803356.1|integrase Length = 345 Score = 35.8 bits (81), Expect = 0.34 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVS-TTQIYTHV 34750 H LRH+ ++LL G + + + LGH +++ TT +Y+H+ Sbjct: 287 HALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHL 326 >ref|NP_818023.1|gp50 Length = 424 Score = 35.4 bits (80), Expect = 0.45 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +2 Query: 34634 HKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDR 34756 H RH+ AT L G D + E+LGH ++Y H D+ Sbjct: 363 HSARHTAATVLRSNGVDEQTRMEILGHNSPEVARVYAHADQ 403 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,726,323 Number of Sequences: 14420 Number of extensions: 1936751 Number of successful extensions: 8778 Number of sequences better than 0.5: 81 Number of HSP's better than 0.5 without gapping: 4652 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8739 length of database: 3,019,461 effective HSP length: 115 effective length of database: 1,361,161 effective search space used: 18683295886 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig56 (43,243 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_039614.1|gene IV product 115 5e-25 ref|NP_040579.1|G IV protein 110 9e-24 ref|NP_047372.1|putative maturation protein 105 3e-22 ref|NP_510894.1|phage assembly protein 101 5e-21 ref|NP_047359.1|maturation protein 97 1e-19 ref|NP_040655.1|unknown protein 74 9e-13 ref|NP_108727.1|minor structural protein 3 54 1e-06 ref|NP_612844.1|Gp15 protein 54 1e-06 ref|NP_663686.1|structural protein 54 2e-06 ref|NP_112710.1|ORF47 54 2e-06 ref|NP_076626.1|endopeptidase 54 2e-06 ref|NP_695158.1|minor capsid protein 47 1e-04 ref|NP_803396.1|tail length tape measure protein 45 8e-04 ref|NP_058454.1|orf 16 45 8e-04 ref|NP_061640.1|phi PVL ORF 15 and 16 homologue 44 0.001 ref|NP_835564.1|hypothetical protein 43 0.002 ref|NP_958615.1|77ORF001 43 0.002 ref|NP_116507.1|unknown 40 0.015 ref|NP_061549.1|Orf53 37 0.21 ref|YP_195243.1|hypothetical protein 37 0.21 ref|NP_943827.1|gp49 36 0.36 >ref|NP_039614.1|gene IV product Length = 428 Score = 115 bits (287), Expect = 5e-25 Identities = 78/303 (25%), Positives = 142/303 (46%), Gaps = 1/303 (0%) Frame = -1 Query: 42340 NALLVQASGADFSAVQRLVEKLDRPRRQVFVEAVIMEVNLKNSMELGVSAHGAIPYKYKG 42161 N+L+V S A+ + +D R QV +++++ E ++ N ++L + Sbjct: 171 NSLVVSGSAQVMPALSDFITSIDVAREQVLIQSLMFETSVSNGVDLSFA----------- 219 Query: 42160 DTGVIPLSSQTGRVSSLDMSSAIALGGFLTGYTGP-ISAELKDLGFGNIPSLGLLIQALQ 41984 + L+S G+V+ GGF T G +S G N L L +QA+Q Sbjct: 220 ----LALASG-GKVA----------GGFNTSALGTALSTAGGSFGIFNGNILALSLQAVQ 264 Query: 41983 SNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPQXXXXXXXXXXXXXXXXXXXXXX 41804 S+S+ V+STP +L + I+VGQNVPF +G Sbjct: 265 SDSNSKVISTPRILTQSGQSGYISVGQNVPFVTGKVT---------------------GE 303 Query: 41803 TQGLGSLYAPIQRQNVELKLKIKPQINEGGNIRLTIEEQTEEIAEKDPQLGPTTAKRSVK 41624 + + + I+R++V + LK+ P + G + LTI+ + + ++ + T +R ++ Sbjct: 304 AASVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLSNQAIASDIITNQRQIQ 363 Query: 41623 TQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWLFRDTTTTKQKVNLLLFLTPY 41444 T + +D T+++GGLI S +PF+ +P++GWLFR + +K + + LT + Sbjct: 364 TTVQIKDGQTLLLGGLISSNQFDSDRSVPFMSKIPLIGWLFRSHSDSKDDRTMFVLLTAH 423 Query: 41443 IIR 41435 +IR Sbjct: 424 VIR 426 >ref|NP_040579.1|G IV protein Length = 437 Score = 110 bits (276), Expect = 9e-24 Identities = 77/303 (25%), Positives = 138/303 (45%), Gaps = 1/303 (0%) Frame = -1 Query: 42340 NALLVQASGADFSAVQRLVEKLDRPRRQVFVEAVIMEVNLKNSMELGVSAHGAIPYKYKG 42161 N+LLV S A +A+ + +D R QV +++++ E +L N ++L +A A G Sbjct: 180 NSLLVSGSAAIMNALADFITSIDVARDQVLIQSLMFETSLVNGVDLSFAAGSA-----SG 234 Query: 42160 DTGVIPLSSQTGRVSSLDMSSAIALGGFLTGYTGP-ISAELKDLGFGNIPSLGLLIQALQ 41984 D GGF T G +S G N L L IQA++ Sbjct: 235 DK---------------------VAGGFNTSALGTALSTAGGSFGIFNGNVLALSIQAVK 273 Query: 41983 SNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPQXXXXXXXXXXXXXXXXXXXXXX 41804 ++S+ V+STP +L + I+VGQNVPF +G Sbjct: 274 NDSNSKVISTPRILTQSGQTGYISVGQNVPFVTGKVT---------------------GE 312 Query: 41803 TQGLGSLYAPIQRQNVELKLKIKPQINEGGNIRLTIEEQTEEIAEKDPQLGPTTAKRSVK 41624 + + + I+R++V + LK+ P + G + LTI+ + + + + T +R ++ Sbjct: 313 AANVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLTSQMTASDIITNQRHMQ 372 Query: 41623 TQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWLFRDTTTTKQKVNLLLFLTPY 41444 T + +D T+++GGLI +P+ S+P++GWLFR + + + + + LT + Sbjct: 373 TTVQIKDGQTLLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNERTMFVLLTAH 432 Query: 41443 IIR 41435 +I+ Sbjct: 433 VIK 435 >ref|NP_047372.1|putative maturation protein Length = 500 Score = 105 bits (263), Expect = 3e-22 Identities = 78/286 (27%), Positives = 127/286 (44%), Gaps = 1/286 (0%) Frame = -1 Query: 42340 NALLVQASGADFSAVQRLVEKLDRPRRQVFVEAVIMEVNLKNSMELGVSAHGAIPYKYKG 42161 NAL+V + + L+ +D P+RQ+F+EAVI E L ++ ELGV+ Sbjct: 197 NALIVSGTAQQLEKLDVLLSAIDVPQRQIFIEAVITETELGDNSELGVN----------- 245 Query: 42160 DTGVIPLSSQTGRVSSLDMSSAIALGGFLTGYTGPISAELKD-LGFGNIPSLGLLIQALQ 41984 + +A GF+T +++LKD L L++A+ Sbjct: 246 ------------------LQAAFDKAGFVTNLVN--ASKLKDNLFIFESGDFNALVKAIS 285 Query: 41983 SNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPQXXXXXXXXXXXXXXXXXXXXXX 41804 +SD +LS P++L D E ITVGQNVPF + Sbjct: 286 GSSDTRLLSRPNILIMDRERGYITVGQNVPFLVSNSTTDG-------------------- 325 Query: 41803 TQGLGSLYAPIQRQNVELKLKIKPQINEGGNIRLTIEEQTEEIAEKDPQLGPTTAKRSVK 41624 G+ I+R++V + L++ P + G ++ L I +++ + + T KR++ Sbjct: 326 ----GTSVQRIERKDVGVSLEVTPHV-MGDDVILVINQESSSVTDSTIAADIITNKRTLM 380 Query: 41623 TQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWLFRDTTT 41486 T + + TIV+GGLI D S +P L P++G LFR T+T Sbjct: 381 TTVAVKSGQTIVLGGLISDEKRNVESGVPVLKDTPLIGGLFRSTST 426 >ref|NP_510894.1|phage assembly protein Length = 426 Score = 101 bits (252), Expect = 5e-21 Identities = 75/302 (24%), Positives = 135/302 (44%) Frame = -1 Query: 42340 NALLVQASGADFSAVQRLVEKLDRPRRQVFVEAVIMEVNLKNSMELGVSAHGAIPYKYKG 42161 N L+V A + + + +D P Q+ +E +I EV ++++ +A Sbjct: 170 NLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDALDFSFAAGS-------- 221 Query: 42160 DTGVIPLSSQTGRVSSLDMSSAIALGGFLTGYTGPISAELKDLGFGNIPSLGLLIQALQS 41981 G + T R++S+ +SSA GG + G + LGL ++AL++ Sbjct: 222 QRGTVAGGVNTDRLTSV-LSSA---GGSFGIFNGDV--------------LGLSVRALKT 263 Query: 41980 NSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPQXXXXXXXXXXXXXXXXXXXXXXT 41801 NS +LS P +L ++ I+VGQNVPF +G + Sbjct: 264 NSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVT---------------------GES 302 Query: 41800 QGLGSLYAPIQRQNVELKLKIKPQINEGGNIRLTIEEQTEEIAEKDPQLGPTTAKRSVKT 41621 + + + I+RQNV + + + P GGNI L I + + ++ T +RS+ T Sbjct: 303 ANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITNQRSIAT 362 Query: 41620 QIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWLFRDTTTTKQKVNLLLFLTPYI 41441 + RD T+++GGL + S +PFL +P++G LF + + ++ L + + I Sbjct: 363 TVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATI 422 Query: 41440 IR 41435 +R Sbjct: 423 VR 424 >ref|NP_047359.1|maturation protein Length = 429 Score = 97.4 bits (241), Expect = 1e-19 Identities = 72/301 (23%), Positives = 130/301 (43%), Gaps = 2/301 (0%) Frame = -1 Query: 42334 LLVQASGADFSAVQRLVEKLDRPRRQVFVEAVIMEVNLKNSMELGVSAHGAIPYKYKGDT 42155 LLV AS + + +D PR QV VE+VI E + + +A GD Sbjct: 174 LLVTASASQHKELAAFFPSVDVPRTQVLVESVIFETTASDGFDFSFAA---------GDP 224 Query: 42154 GVIPLSS--QTGRVSSLDMSSAIALGGFLTGYTGPISAELKDLGFGNIPSLGLLIQALQS 41981 P++ T R++S+ S+ + G F GNI LGL ++AL++ Sbjct: 225 SGSPVAGGINTDRLTSVLSSTGGSFGIFN----------------GNI--LGLSLKALET 266 Query: 41980 NSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPQXXXXXXXXXXXXXXXXXXXXXXT 41801 +S +LS P +L + T GQNVPF +G Sbjct: 267 SSKSTLLSMPRILTMSGQPGTFTAGQNVPFVTGRVT---------------------GEA 305 Query: 41800 QGLGSLYAPIQRQNVELKLKIKPQINEGGNIRLTIEEQTEEIAEKDPQLGPTTAKRSVKT 41621 + + + I+R +V + LK+ P + GG + + + + I++ T RS+ T Sbjct: 306 ANVNNPFQTIERHDVGISLKVVPVVTPGGLLIMDVSTNADSISDSQTASDIITNTRSIST 365 Query: 41620 QIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWLFRDTTTTKQKVNLLLFLTPYI 41441 + + T+++GG++ +R S S +P++ +P++G LF ++ K L + + + Sbjct: 366 TVQLKSGQTVLLGGMVDNRESDSDSSVPWVSKIPLIGALFTSKSSNANKRTLYILIRARV 425 Query: 41440 I 41438 + Sbjct: 426 V 426 >ref|NP_040655.1|unknown protein Length = 430 Score = 74.3 bits (181), Expect = 9e-13 Identities = 72/320 (22%), Positives = 131/320 (40%), Gaps = 5/320 (1%) Frame = -1 Query: 42367 VKITADKTQNALLVQASGADFSAVQRLVEKLDRPRRQVFVEAVIMEVNLKNSMELGVSAH 42188 + +T D+ N++ + F A++ +++ +D P RQV +EA ++E ++ S LG++ Sbjct: 151 MSMTVDERTNSVFAALPSSFFPALESVIQAIDVPVRQVAIEANVVEASVDWSKRLGLNWG 210 Query: 42187 GAIPYKYKGDTGVIPLSSQTGRVSSLDMSSAIALGGFLTGYTGPISAELKDLGFG---NI 42017 GA+ SL SA+ G A +GFG N Sbjct: 211 GAL---------------------SLGNWSAVTAGDLSV-------AAGSSIGFGFLSNT 242 Query: 42016 PSLGLLIQALQSNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPQXXXXXXXXXXX 41837 SL L A+++ + V+S P LL D + + + G +P+Q Sbjct: 243 LSLDGLFTAMENEGNGRVVSRPTLLTLDRQSASVLRGTELPYQ----------------- 285 Query: 41836 XXXXXXXXXXXTQGLGSLYAPIQRQNVELKLKIKPQINEGGN--IRLTIEEQTEEIAEKD 41663 Q G + ++ L L++KP I+ + I + + + + Sbjct: 286 ------------QSAGDGATSVAFKHAALSLEVKPVISPDNSIVIEVLVSRDSPNFSNAI 333 Query: 41662 PQLGPTTAKRSVKTQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWLFRDTTTT 41483 + P R V T V Q T+V+GG+ + S++ + +P +G LF+ Sbjct: 334 DGVPPIDTNRLVTTIRVPHGQ-TVVLGGVYSTINQQGSSRVSGISRIPGIGRLFKKKEHV 392 Query: 41482 KQKVNLLLFLTPYIIRDEAD 41423 ++ LL+FLTP I+ E + Sbjct: 393 TEQYELLIFLTPRILGLEVE 412 >ref|NP_108727.1|minor structural protein 3 Length = 906 Score = 53.9 bits (128), Expect = 1e-06 Identities = 21/67 (31%), Positives = 41/67 (61%) Frame = +3 Query: 18180 AGWFKGYGNIVIVDHGDGFHTLVAHLASMRTAMGEDVAAGAVLGTVGDTGSLKGPYLYFE 18359 + ++ YGN ++ H DG +T AH + + ++G++V G +G +G TG + GP+L+F+ Sbjct: 825 SNYYNWYGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQ 884 Query: 18360 LREKGRP 18380 ++ P Sbjct: 885 FMDQYWP 891 >ref|NP_612844.1|Gp15 protein Length = 983 Score = 53.9 bits (128), Expect = 1e-06 Identities = 24/61 (39%), Positives = 36/61 (59%) Frame = +3 Query: 18198 YGNIVIVDHGDGFHTLVAHLASMRTAMGEDVAAGAVLGTVGDTGSLKGPYLYFELREKGR 18377 YG + VDHG G T+ AH + + G+ V G ++ G+TG+ GP+L++ELR G Sbjct: 909 YGKYLFVDHGGGLITIYAHNSELLVNEGDRVKRGQIIAKTGNTGNSTGPHLHWELRVNGI 968 Query: 18378 P 18380 P Sbjct: 969 P 969 >ref|NP_663686.1|structural protein Length = 908 Score = 53.5 bits (127), Expect = 2e-06 Identities = 21/67 (31%), Positives = 41/67 (61%) Frame = +3 Query: 18180 AGWFKGYGNIVIVDHGDGFHTLVAHLASMRTAMGEDVAAGAVLGTVGDTGSLKGPYLYFE 18359 + ++ YGN ++ H DG +T AH + + ++G++V G +G +G TG + GP+L+F+ Sbjct: 827 SNYYDWYGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQ 886 Query: 18360 LREKGRP 18380 ++ P Sbjct: 887 FMDQYWP 893 >ref|NP_112710.1|ORF47 Length = 918 Score = 53.5 bits (127), Expect = 2e-06 Identities = 21/67 (31%), Positives = 41/67 (61%) Frame = +3 Query: 18180 AGWFKGYGNIVIVDHGDGFHTLVAHLASMRTAMGEDVAAGAVLGTVGDTGSLKGPYLYFE 18359 + ++ YGN ++ H DG +T AH + + ++G++V G +G +G TG + GP+L+F+ Sbjct: 837 SNYYDWYGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQ 896 Query: 18360 LREKGRP 18380 ++ P Sbjct: 897 FMDQYWP 903 >ref|NP_076626.1|endopeptidase Length = 894 Score = 53.5 bits (127), Expect = 2e-06 Identities = 21/67 (31%), Positives = 41/67 (61%) Frame = +3 Query: 18180 AGWFKGYGNIVIVDHGDGFHTLVAHLASMRTAMGEDVAAGAVLGTVGDTGSLKGPYLYFE 18359 + ++ YGN ++ H DG +T AH + + ++G++V G +G +G TG + GP+L+F+ Sbjct: 813 SNYYDWYGNYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQ 872 Query: 18360 LREKGRP 18380 ++ P Sbjct: 873 FMDQYWP 879 >ref|NP_695158.1|minor capsid protein Length = 1608 Score = 47.4 bits (111), Expect = 1e-04 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Frame = +3 Query: 18180 AGWFKGYGN-IVIVDHGDGFHTLVAHLASMRTAMGEDVAAGAVLGTVGDTGSLKGPYLYF 18356 AG G+GN +VI G T+ H+ M+ G+ V AG ++ VG G GP++++ Sbjct: 1281 AGPASGFGNWVVIKPSGASVDTIYGHMKRMKVKTGQHVKAGQIIAWVGSEGQSSGPHVHY 1340 Query: 18357 ELR 18365 ELR Sbjct: 1341 ELR 1343 >ref|NP_803396.1|tail length tape measure protein Length = 1550 Score = 44.7 bits (104), Expect = 8e-04 Identities = 22/61 (36%), Positives = 33/61 (54%) Frame = +3 Query: 18195 GYGNIVIVDHGDGFHTLVAHLASMRTAMGEDVAAGAVLGTVGDTGSLKGPYLYFELREKG 18374 GYG V + G + AHL+ + G+ V G +G G+TG GP+L++E+R G Sbjct: 1218 GYGKWVKIVKG-ALEVIYAHLSKYKVKTGQQVRVGQTVGISGNTGFSTGPHLHYEMRWNG 1276 Query: 18375 R 18377 R Sbjct: 1277 R 1277 >ref|NP_058454.1|orf 16 Length = 539 Score = 44.7 bits (104), Expect = 8e-04 Identities = 22/61 (36%), Positives = 33/61 (54%) Frame = +3 Query: 18195 GYGNIVIVDHGDGFHTLVAHLASMRTAMGEDVAAGAVLGTVGDTGSLKGPYLYFELREKG 18374 GYG V + G + AHL+ + G+ V G +G G+TG GP+L++E+R G Sbjct: 443 GYGKWVKIVKG-ALEVIYAHLSKYKVKTGQQVRVGQTVGISGNTGFSTGPHLHYEMRWNG 501 Query: 18375 R 18377 R Sbjct: 502 R 502 >ref|NP_061640.1|phi PVL ORF 15 and 16 homologue Length = 1313 Score = 43.9 bits (102), Expect = 0.001 Identities = 22/61 (36%), Positives = 32/61 (52%) Frame = +3 Query: 18195 GYGNIVIVDHGDGFHTLVAHLASMRTAMGEDVAAGAVLGTVGDTGSLKGPYLYFELREKG 18374 GYG V + G + AHL+ + G V G +G G+TG GP+L++E+R G Sbjct: 1217 GYGKWVKIVKG-ALEVIYAHLSKYKVKTGHQVRVGQTVGISGNTGFSTGPHLHYEMRWNG 1275 Query: 18375 R 18377 R Sbjct: 1276 R 1276 >ref|NP_835564.1|hypothetical protein Length = 1509 Score = 43.1 bits (100), Expect = 0.002 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Frame = +3 Query: 18195 GYGNIVIVDHGDGFHTLVAHLASMRTA--MGEDVAAGAVLGTVGDTGSLKGPYLYFELRE 18368 GYGN V + G L AHL + + G V G V+G G+TG GP+L+FE+R Sbjct: 1173 GYGNYVKITSGV-IDMLFAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPHLHFEMRR 1231 Query: 18369 KGR 18377 GR Sbjct: 1232 NGR 1234 >ref|NP_958615.1|77ORF001 Length = 1509 Score = 43.1 bits (100), Expect = 0.002 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Frame = +3 Query: 18195 GYGNIVIVDHGDGFHTLVAHLASMRTA--MGEDVAAGAVLGTVGDTGSLKGPYLYFELRE 18368 GYGN V + G L AHL + + G V G V+G G+TG GP+L+FE+R Sbjct: 1173 GYGNYVKITSGV-IDMLFAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPHLHFEMRR 1231 Query: 18369 KGR 18377 GR Sbjct: 1232 NGR 1234 >ref|NP_116507.1|unknown Length = 1713 Score = 40.4 bits (93), Expect = 0.015 Identities = 39/225 (17%), Positives = 87/225 (38%), Gaps = 10/225 (4%) Frame = +2 Query: 30239 EHGKGFAVVAEQIRELAAQIARSTTSIGDIVRAVRDDVEG----------TAALIDRGDA 30388 E+GK A +AE +EL + ST ++G + ++ V T+ ++D Sbjct: 330 EYGKSQAEIAEGYQELIKRGYTSTEALGAMRSELQASVASGDDFNNVLSVTSQVVDAYGM 389 Query: 30389 LAGEGVQLARNSLEALGEIRRSTAQGRETAAAIRAAVGSHAQSTHEVSLLVESVAEGSRA 30568 Q+ +N+ + + ++ + A++ A+ S+H + Sbjct: 390 RTDNAAQMTKNTKDVVNQLAYAADMTATDFASMGKAMEYVGDSSHSAGFQLSE------- 442 Query: 30569 VAAAVQLVGRSSAGVNTASRSVNAMADQVARALEDQSARGRQQLESLGRVERMLAEIGRA 30748 ++A+ ++ + A + + + + AL DQSA +S + +AE + Sbjct: 443 ASSAIGILSNHGLEADKAGTGLRKVINSITGALSDQSASQEDAAKSESALNEKIAEHQKK 502 Query: 30749 VERHNAATRRVREGLRALSQTAGEHERAVEGLSGLAERLGSRSRA 30883 +E A +A ++ + + A+ L ++L S A Sbjct: 503 LEEAQAVVNSGTGNTKAATKAIEKQKEAIGKLQDKVDQLQSGGAA 547 >ref|NP_061549.1|Orf53 Length = 354 Score = 36.6 bits (83), Expect = 0.21 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 5/100 (5%) Frame = -2 Query: 27003 RQRLDLRGRIERNRAEADDLA--KRAGQLDEARARH---VEKLGHTRQLKLRLDEQRGAQ 26839 R++ + RI R AEA+ LA +RA + +A AR + R+L+LRL ++ + Sbjct: 203 REQKEREERIAREAAEAERLAAERRAQEERDATARREAEAKAAAERRELELRLAAEKAER 262 Query: 26838 EELLERTRAEFIQNEAKLITLREELAEKRSRLQSLLEIVR 26719 E+L + RAE + +A+ AE++ + I R Sbjct: 263 EKLEAQQRAEQAERDAQRRAEEATAAERQRQADEQARIER 302 >ref|YP_195243.1|hypothetical protein Length = 749 Score = 36.6 bits (83), Expect = 0.21 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Frame = +3 Query: 18201 GNIVIVDHGDGFHTLVAHLASMRTAMGEDVAAGAVLGTVG------DTGSLKGPYLYFE 18359 G + IV H DG T HL+ + G V AG +LG G G GP+L+FE Sbjct: 594 GEVHIV-HDDGTETRYLHLSKVAVRQGAQVVAGTLLGETGGEPGTPGAGPSTGPHLHFE 651 >ref|NP_943827.1|gp49 Length = 429 Score = 35.8 bits (81), Expect = 0.36 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Frame = +3 Query: 18177 HAGWFKGYGNIVIVDH--GDGFHTLV------AHLASMRTAMGEDVAAGAVLGTVGDTGS 18332 + G G+G +++DH DG T V A +R G+ V AG ++ VG G Sbjct: 43 YIGRADGFGQWIVIDHPAADGGGTTVYGHMWDAFATGLR--QGQRVEAGQLIAYVGTNGQ 100 Query: 18333 LKGPYLYFEL 18362 GP+L+FE+ Sbjct: 101 STGPHLHFEV 110 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 111,953,309 Number of Sequences: 14420 Number of extensions: 1992751 Number of successful extensions: 9186 Number of sequences better than 0.5: 21 Number of HSP's better than 0.5 without gapping: 4841 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9163 length of database: 3,019,461 effective HSP length: 115 effective length of database: 1,361,161 effective search space used: 19461879978 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig57 (38,861 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818250.1|gp199 414 e-115 ref|NP_818618.1|gp80 280 8e-75 ref|NP_046685.1|putative DNA polymerase 236 1e-61 ref|NP_818425.1|gp127 120 8e-27 ref|NP_818053.1|gp80 100 1e-20 ref|NP_150145.1|putative DNA methylase 93 2e-18 ref|NP_839905.1|putative methylase 92 3e-18 ref|NP_813725.1|gp9.1 83 2e-15 ref|NP_612994.1|hypothetical protein 75 4e-13 ref|NP_049482.1|serine 75 4e-13 ref|NP_817858.1|gp7 73 2e-12 ref|NP_665998.1|putative C5-cytosine methyltransferase 64 1e-09 ref|NP_046694.1|modification methylase 56 3e-07 ref|NP_945098.1|gp67 53 2e-06 ref|NP_878240.1|Mth 51 1e-05 ref|NP_944253.1|hypothetical protein; similar to DNA methyltrans... 47 1e-04 ref|YP_006537.1|Dmt 42 0.003 ref|NP_848249.1|cytosine methylase 37 0.11 ref|NP_046954.1|gp58 37 0.14 ref|YP_164274.1|DNA cytosine methyltransferase 36 0.32 ref|NP_944302.1|conserved phage protein 36 0.32 >ref|NP_818250.1|gp199 Length = 1131 Score = 414 bits (1064), Expect = e-115 Identities = 319/991 (32%), Positives = 492/991 (49%), Gaps = 70/991 (7%) Frame = +1 Query: 25558 LHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVKPILGM 25737 LH H S+LDG R +++ K G SVA+TDH ++ G F K + AGVKP+LG Sbjct: 8 LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 67 Query: 25738 EAY----VAGDKGR-TDRSERIGRHLILLAKNAEGWANLRYLSSKAFT-EGFYYDPRIDK 25899 E +A + R T S+ H++LLA+N G NL LSS A+ E FY P++D Sbjct: 68 EQRWMLNIADSRERKTGASD--SSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQLDP 125 Query: 25900 QLLRDHSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLEVQS----N 26067 LL + GL C+ D AR+ IF F+ E+ + N Sbjct: 126 GLLMQYRDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGD-HFYSELHTWQFIN 184 Query: 26068 GMR-EQLDVNAKLAQ-------LGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIASNKTF 26223 + EQ +NA++++ L ++ G+PLV DAHY ++ + H + +++ Sbjct: 185 PVSPEQQALNARMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSWK 244 Query: 26224 QDPKRLR-HDTDGLFVAGPDEM-------AAALPDFREALDNTLRIAEMCNVELPLGKTF 26379 +D R H D + A DE+ EA+ N+ IA+ CN E+ Sbjct: 245 KDQHEERGHAADWMMNA--DEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLA 302 Query: 26380 LPSFTLPEGMSEDDYIVKLAREGLDRRFREIDGKYPHDRDLYRQRLEMELGVIKKMGFPG 26559 +P + +ED + A E +RF +D P D +YRQRLE E +I G Sbjct: 303 MPRLHATD--AEDAAAFRRAIEEGFKRF-VVDKGLPED--VYRQRLEYEAKLIIDKNMAG 357 Query: 26560 YFLIVQDFINWAKE--HHIPV-----------GPGRGSGAGSIVAWSLRITDLDPLRWNL 26700 YF +V D++ A+ +H + GPGRGS GS+V + + IT +DP++++L Sbjct: 358 YFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKYDL 417 Query: 26701 LFERFLNPERVSMPDFDVDFCQNRRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVV 26880 +FERF+NP+R PD DVDF ++++ V QY+ +YG +NV I T + R +++D+ Sbjct: 418 MFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQDLC 477 Query: 26881 RVMGLPFAEGDRIAKLVPDPVQGKTPPLKELVFGSDKMPAEPRLKELYDKPT--VISQWV 27054 R G+PF E ++ LV Q P +E + L E D PT + Q + Sbjct: 478 RAQGIPFGEMKKMIDLVEQVDQ--IAPFEEGM----------ELPEDEDPPTWGEVLQEI 525 Query: 27055 DDKGVQNKVTTKDLLDIAMSLEGLNRQAGLHAAGVVIADKPLWE-YVPAYKDDKSEMLVS 27231 + DL ++ + + R G+H AGV++ P++ +P + +++ + Sbjct: 526 GGELAPYAKKYPDLFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRAT 585 Query: 27232 QFAKEEVEAAGLVKFDFLGLKTLTVIDDALRMVKRNHPEMKDF--AASDIP--------- 27378 QF E+E G VK D L K L V+D A ++ H D+ IP Sbjct: 586 QFDMYELEELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVITL 645 Query: 27379 -----IDDPAVYELISRGDTGGVFQMESSGFTEMVVKMKPSRFEDVIAAGALYRPGPLDQ 27543 ++DPA+Y+ I RG T G+FQ+ + T++ ++ +P D+ ++ RPG Sbjct: 646 NEERYLNDPAIYDQIDRGQTAGLFQVNTPAGTKLAMRFRPRSVVDMADLASINRPG---- 701 Query: 27544 KLEDGRTMVDVYIDRKHGREKVQYPHPSLEKVLEP-----TYGVIVYQEQVMQISQVLAG 27708 + ++D YI+R+HGRE+V Y HP +E + P TYG++VYQEQ+++ ++ LAG Sbjct: 702 -VTRVPGLLDKYIERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAG 760 Query: 27709 YSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVAN------GVDDKVAGGIFDLMEKFAA 27870 ++ G+A+ LR+ +GKKK E++ + FL G +AN G KVA I+ ++ A Sbjct: 761 FTPGEAERLRKGIGKKKMEIINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGA 820 Query: 27871 YGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHISEARASQLEVLP 28050 Y FNKSH Y L Q AW+K +Y EF+ + +TDK + + E R + VLP Sbjct: 821 YAFNKSHGVGYALQPCQEAWVKHYYFDEFITGCL---VIHTDKTIRFLRECRQRKRAVLP 877 Query: 28051 PDVNESDAAFGAFPPGAESPKGSRGRIRFGLGAVRGVGDSAVQAIVEARASGPFKSLFDL 28230 PDVN+S A F G IRFGL + G+GD+A+ I+ A+ PFK L D Sbjct: 878 PDVNQSGAGFTLTDEG----------IRFGLTDISGIGDAAMPDIL---ANRPFKDLDDF 924 Query: 28231 AGRVD-SKKINKKVLEALVKSGALDFEGVPR 28320 R S K V++AL+K GA DF G R Sbjct: 925 LARASKSGGAKKGVVDALIKVGAFDFTGEHR 955 >ref|NP_818618.1|gp80 Length = 1111 Score = 280 bits (716), Expect = 8e-75 Identities = 247/959 (25%), Positives = 417/959 (43%), Gaps = 68/959 (7%) Frame = +1 Query: 25549 FVHLHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVKPI 25728 FV H H +S D + GM ++ ++HGN+ F ++ KE G+KPI Sbjct: 3 FVSFHTHNTFSYADALGMPSIHAARAEELGMWALGTSNHGNVNDHAQFERECKERGIKPI 62 Query: 25729 LGMEAYVAGDKGRTDRSERIGRHLILLAKNAEGWANLRYLSSKAFTEGFYYDPRIDKQLL 25908 G E Y + G D++ R HL + A N G+ NL + ++++ + + + P + + L Sbjct: 63 FGCEIYFS-PVGEEDKTRR-KTHLTIFAMNEIGYRNLNRIITQSYVDAYQW-PTVSWENL 119 Query: 25909 RDHSKGLVGLTACL-------------AGEVPRLARQGDMDGARRVAREYRDIFEPGSFF 26049 + +G++ L+ C GE DMD ARR + Y D+F F Sbjct: 120 EANHEGILVLSGCADSLLSCTLLGGKYLGEQRSHVTDDDMDNARRQIQRYLDVFG-NRFA 178 Query: 26050 LEVQSNGMREQLD-VNAKLAQLGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIA--SNKT 26220 LEVQ ++ +N +A+L RD G+PLV TAD HY ++ K +L S+ Sbjct: 179 LEVQRFPHYDRTRALNPAIAELSRDTGVPLVATADVHYPFPEQNKLQALLHAARWKSSPD 238 Query: 26221 FQDPKRLRHDTDGLFVAGPDEMAAAL-------PDFREALDNTLRIAEMCNVELPLGKTF 26379 F H + + E+ L D +A+ T +AE C VELP K Sbjct: 239 FAAEASWEHSANLTYPLSDKEIHDDLVATGLDSADAWKAIQYTSILAERCTVELPKAKPL 298 Query: 26380 LPSFTLPEGMSEDDYIVKLAREGLDRRFREIDGKYPHDRDLYRQRLEMELGVIKKMGFPG 26559 F +G++ + + +G R + + Y +RL+ E +I F Sbjct: 299 --RFVCDKGLTAKQQLSREIAKGWKYRVAQRPDMARRKAE-YVKRLQYEFKIITDKDFGD 355 Query: 26560 YFLIVQDFINWAKEHHIPVGPGRGSGAGSIVAWSLRITDLDPLR---WNLLFERFLNPER 26730 YFL++ D + AK+ I VGP RGS A S++++ LRIT++DPL ++FERF++P R Sbjct: 356 YFLVISDLVRRAKDKSIDVGPARGSAAASLISYLLRITEIDPLHPLFNKMVFERFIDPFR 415 Query: 26731 VSMPDFDVDFCQNRRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEG 26910 PD D+DF +R E+ + YG +NV + ++ ++DV R LP Sbjct: 416 SDYPDIDLDFDDEKRWEIELDAKNLYGPENVASVANNTGYHGKNTLKDVARAYKLPLETF 475 Query: 26911 DRIAKLVPDPVQGKTPPLKELVFGSDKMPAEPRLKELYDKPTVISQWVDDKGVQNKVTTK 27090 IAK V+ + + P + L + Sbjct: 476 KAIAKRTTVRVETDDKRNDSISDVLESYATHPEIAGLIE------------------AHA 517 Query: 27091 DLLDIAMSLEGLN-----RQAGLHAAGVVIADKPLWEYVPAYKDD------KSEMLVSQF 27237 D L +A++LE N + +HA G VIA P+ + Y D K+++ V + Sbjct: 518 DKLAMAVALESGNGDGNLHSSSVHACGFVIASDPIPDVCAIYLKDKGSGSKKTKVQVIPY 577 Query: 27238 AKEEVEAAGLVKFDFLGLKTLTVI----------------------DDALRMVKRNHPEM 27351 K + E+ G++K DFLG T+ I D +R+ KR + Sbjct: 578 DKRDAESLGMLKVDFLGSATMGAIGLMRKWSRVELEELYLSIYKDYDRWIRVQKR----I 633 Query: 27352 KDFAASDIPIDDPAVYELISR---GDTGGVFQMESSGFTEMVVKMKPSRFEDVIAAGALY 27522 K+ + ++ R D G+ Q E ++ ++P F+++ A AL Sbjct: 634 KESGGKRVGFTANRFDNILKRFRNDDVVGIMQFEGGTTRQVCRNVQPVDFDELAACTALS 693 Query: 27523 RPGPLDQKLEDGRTMVDVYIDRKHGREKVQYPHP-SLEKVLEPTYGVIVYQEQVMQISQV 27699 RPGP G D Y+ K+G + HP ++ + T+G IVYQEQ+M I + Sbjct: 694 RPGPY-----YGGQYTD-YVAVKNGEKDWARIHPKGFDRHVAFTFGQIVYQEQIMWILRD 747 Query: 27700 LAGYSLGQADLLRRAMGKKKAEVMAKE-RVGFLAG-AVANGVDDKVAGGIFDLMEKFAAY 27873 LAG+ + +R+ +GKK E + + F+ G A GVD A +F + A Y Sbjct: 748 LAGFDNAEVLRVRKIIGKKLGEFQFEAIKQAFIDGCAQTCGVDPDTALRVFGAIRTAAGY 807 Query: 27874 GFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKV---VLHISEARASQLEV 28044 FN +H+ +Y L+ K + EF A+ + ++ + +A A ++ + Sbjct: 808 AFNIAHAYSYALIAYWQMGFKMDHTTEFFASTLYKNGDGKKEIPRRTAVLQDAEAHRIGI 867 Query: 28045 LPPDVNESDAAFGAFPPGAESPKGSRGRIRFGLGAVRGVGDSAVQAIVEARASGPFKSL 28221 D+N S A + + + + + G + G + G+ ++ +AI++ R + P++ + Sbjct: 868 GGWDLNLSGANWRPYYDHSAHSR-NLGTVMPGFQQIPGIAEATAKAILDWRDNLPWQDI 925 >ref|NP_046685.1|putative DNA polymerase Length = 1305 Score = 236 bits (602), Expect = 1e-61 Identities = 255/1037 (24%), Positives = 441/1037 (42%), Gaps = 120/1037 (11%) Frame = +1 Query: 25561 HLHTLYS---LLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEA------ 25713 H HT S LLD +K+LLKT +A+TDH L +D + +E Sbjct: 5 HCHTDRSNIRLLDSTNSVKELLKTAVKMEYKGLAITDHEVLSAHLDAIRTVREMKKKGDM 64 Query: 25714 --GVKPILGMEAYVAGDKGRTDRSERIG----RHLILLAKNAEGWANLRYLSSKAFTEGF 25875 K ILG EAY+ + + G H ++LA + +G LR LSS+A+ F Sbjct: 65 PEDFKLILGNEAYLVDSLEEVRDNYKSGVTKFPHFLMLAMDPKGHEQLRILSSQAWENSF 124 Query: 25876 YYD-----PRIDK---QLLRDHSKGLVGLTACLAGEV-------PRLARQGDMDGARRVA 26010 Y P + K +LL ++ TACL EV GD ++ Sbjct: 125 YTGTMERVPTVKKDVEELLSKDPGHIIATTACLGSEVNIHLLKIKAFEETGDSQSIKQHK 184 Query: 26011 REYRD-------IFEPGSFFLEVQSNGMREQLDVNAKLAQLGRDEGIPLVGTADAHYVSR 26169 + + +F FF+E+Q EQ+ N KL + + ++ T DAHY+ Sbjct: 185 LKIHEFITWCIEVFGKDKFFIELQPALSEEQIYCNKKLIDIANGYDLQMIVTTDAHYLRP 244 Query: 26170 QEAKAHEVLMCIASNKTFQDPKRLRHDTDGLFVAGPDEMAAALPDFR-----EALDNTLR 26334 ++ H+ + + + + + FV DE+ + +A+ NT+ Sbjct: 245 EDRAIHQAFLNAKDGE-----REVDSFYEACFVQNVDEIHERMDYIDKEVIDQAIKNTML 299 Query: 26335 IAEMCN------------VELP---LGKTFLPSFTLPE---GMSE-----DDYIVKLARE 26445 I EM +ELP L F P++ E MSE D Y++KL + Sbjct: 300 IGEMIEDYTIEHEPIIPKMELPNFKLRHLFKPAYDQYEYIKKMSESADEQDRYLLKLIED 359 Query: 26446 GLDRRFREIDGKYPHDRDLYRQ---RLEMELGVIKKMG------FPGYFLIVQDFIN--W 26592 G + + + + R+ + + R+ +ELG + ++ Y++ V++ IN W Sbjct: 360 GFEEKLKTSE----LTREAFHKILNRINVELGELWEISQKLNQSMSSYYITVREIINIIW 415 Query: 26593 AKE--HHIPVGPGRGSGAGSIVAWSLRITDLDPLRWNLLFERFLNPERVSMPDFDVDFCQ 26766 E VG RGS AG +V + L T ++P++++L R ++ R +PD D+D Sbjct: 416 DDECGGDSLVGAARGSAAGYLVNYLLDNTQINPMQYDLPHWRHIHKSRPDLPDIDIDTEG 475 Query: 26767 NRRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDRIAKLVPDPVQ 26946 ++R ++++ +R ++G V QI TFG+ ++S ++ R +G+ ++ ++P + Sbjct: 476 SKRQKILKALRERFGDKRVLQIATFGTEGSKSALQTACRGLGIDNDISQYLSGMIPFE-R 534 Query: 26947 GKTPPLKELVFGSDKMPAEPRLKELYDKPTVISQWVDDKGVQNKVTTKDLLDIAMSLEGL 27126 G PLK +G DK +KE ++ +L + A+ +EGL Sbjct: 535 GSNWPLKHCFYG-DKETGRKPIKEF---------------IREVEQYPNLKETALKIEGL 578 Query: 27127 NRQAGLHAAGVVIADKPLWEYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKTLTV 27306 + HAAGV+I + + K K ++QF + EA G VKFD L ++ L Sbjct: 579 TNKRSSHAAGVIIFNDEYTKSNAMMKTPKG-AYITQFNMGDSEAMGSVKFDLLTIEALDK 637 Query: 27307 IDDAL-RMVKRNHPEM---------KDFAASDIPIDDPAVYELISRGDTGGVFQMESSGF 27456 I L ++++ N E K I +D ++E+ G+ +FQ + Sbjct: 638 IRVTLDQLIENNEIEWQGSLKETYNKYIHPDVIEYEDDKLWEMAGNGEIMDLFQFSTEVG 697 Query: 27457 TEMVVKMKPSRFEDVIAAGALYRPGPLDQKLEDGRTM-VDVYIDRKHG-----REKVQYP 27618 + VVK+KP + +L R + DG VD Y+ K+ E +Y Sbjct: 698 HQSVVKVKPKNLLEAAVTNSLMR------LMSDGEEQPVDTYVKYKNNLNKWYEEMTRYG 751 Query: 27619 HPS-----LEKVLEPTYGVIVYQEQVMQ--ISQVLAGYSLGQADLLRRAMGKKKAEVMAK 27777 +E+ L+ YGV QE VMQ + + +A + + +++ LR+++ KKK +V+ + Sbjct: 752 LSEKEIRVMERHLKDIYGVADTQEVVMQMVMDKDIANFDIKESNYLRKSIAKKKEDVLKE 811 Query: 27778 ERVGFLAGAVANGVDDKVAGGIFDL-MEKFAAYGFNKSHSAAYGLLTVQTAWLKAHY-PV 27951 F G D + ++++ ++ Y F+ H+ AY ++ +Q L Y P+ Sbjct: 812 VEELFFKKGKEIGTSDNLLNYVWNVQFKRQFGYSFSLLHTLAYSIIALQELNLNYRYNPL 871 Query: 27952 EFMAALIS----------------SEASNTDKVVLHISEARASQLEVLPPDVNESDAAFG 28083 + A ++ + A+N KV I R +++ PD+N++D F Sbjct: 872 YWNTACLTVNSGGIDTEDTKDNKKTAATNYGKVASAIGNIRQRGIKIDLPDINKADFGF- 930 Query: 28084 AFPPGAESPKGSRGRIRFGLGAVRGVGDSAVQAIVEARASGPFKSLFDLAGRVDSKKINK 28263 + I FGL + G+GD + IV R P+ D R+ I K Sbjct: 931 -------RTDINNNSILFGLKGMNGIGDDVIHHIVLNR---PYSDFNDFIERMFKSGIIK 980 Query: 28264 K-VLEALVKSGALDFEG 28311 K + L+K G D G Sbjct: 981 KGQVIQLIKGGCFDSFG 997 >ref|NP_818425.1|gp127 Length = 247 Score = 120 bits (302), Expect = 8e-27 Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 7/174 (4%) Frame = +2 Query: 23051 LSVAGLFAGIGGLELGMARSGHHTKLLCENDACARAVLDARFPEVPKHGDIRTLER---- 23218 L+ LFAGIGG L + R+G T E D R +L +P+ + DI+ + Sbjct: 3 LTHVDLFAGIGGFSLTLQRAGAKTVANVEIDKNCRQILARHYPDAVQFDDIKNVSGDDLR 62 Query: 23219 ---LPKDTSLVTAGFPCQDLSQAGKTAGILGSRSGLVGEVFRLLEQSTVPWILLENVPFM 23389 + ++T GFPCQD+S AG+ AG+ G RSGL E+ RLL + W +LENVP + Sbjct: 63 SVGFVPERGILTGGFPCQDISAAGRGAGLAGERSGLFWEIVRLLNELHPKWFILENVPRL 122 Query: 23390 LQLSRGRAMDVIVQGFETLGYRWAYRVVDTRAFGLPQRRERVFFLASLEEDPRS 23551 L + GR M +V GY A+RV+D + G+PQRR R+F + L + R+ Sbjct: 123 LSIHGGRDMGTVVGALAGSGYGLAWRVLDAQFTGVPQRRRRIFIVGHLGDSGRA 176 >ref|NP_818053.1|gp80 Length = 252 Score = 100 bits (248), Expect = 1e-20 Identities = 59/165 (35%), Positives = 86/165 (52%), Gaps = 6/165 (3%) Frame = +2 Query: 23051 LSVAGLFAGIGGLELGMARSGHHTKLLCENDACARAVLDARFPEVPKHGDIRTL------ 23212 ++V LF+GIGGLELG+ R+G E + R +L +P VP+H D+RT Sbjct: 1 MNVLSLFSGIGGLELGLERAGMTVVGQVEINPYCRQILAKHWPHVPRHDDVRTTVEWWES 60 Query: 23213 ERLPKDTSLVTAGFPCQDLSQAGKTAGILGSRSGLVGEVFRLLEQSTVPWILLENVPFML 23392 E P+ L+ GFPCQD+S AG GI G +S L G + + ++L+ENV +L Sbjct: 61 EERPR-VDLICGGFPCQDISNAGARKGITGPKSSLWGGMLHTVRNIRPRYVLIENVAALL 119 Query: 23393 QLSRGRAMDVIVQGFETLGYRWAYRVVDTRAFGLPQRRERVFFLA 23527 R +D ++ G+ + V+ A G P RER+F LA Sbjct: 120 V----RGVDTVLADLHESGFNAEWSVLSACAMGAPHTRERLFILA 160 >ref|NP_150145.1|putative DNA methylase Length = 385 Score = 93.2 bits (230), Expect = 2e-18 Identities = 65/189 (34%), Positives = 89/189 (47%), Gaps = 7/189 (3%) Frame = +2 Query: 23066 LFAGIGGLELGMARSGHHTKLLCENDACARAVLDARFP---EVPKHGDIRTLE----RLP 23224 LFAGIGG +GM +GH CE D ARA A E+ H DI T+ R Sbjct: 6 LFAGIGGFRIGMESAGHECIGFCEIDKFARASYKAIHDTKGEIELH-DITTVSDDTIRGI 64 Query: 23225 KDTSLVTAGFPCQDLSQAGKTAGILGSRSGLVGEVFRLLEQSTVPWILLENVPFMLQLSR 23404 ++ GFPCQ S AG G +R L E+ R ++ LENV +L R Sbjct: 65 GHVDVICGGFPCQAFSIAGNRRGFEDTRGTLFFEIARFASILKPRYLFLENVKGLLNHDR 124 Query: 23405 GRAMDVIVQGFETLGYRWAYRVVDTRAFGLPQRRERVFFLASLEEDPRSVLFADEAGAPE 23584 G +VI+ + LGY ++V++++ FG+PQ RERVF + L +F P Sbjct: 125 GNTFEVILSALDELGYDVEWQVLNSKNFGVPQNRERVFIIGHLRGGSGRKVF------PL 178 Query: 23585 QEDPAGLAC 23611 D A + C Sbjct: 179 SGDGAAITC 187 >ref|NP_839905.1|putative methylase Length = 185 Score = 92.4 bits (228), Expect = 3e-18 Identities = 60/164 (36%), Positives = 82/164 (50%), Gaps = 8/164 (4%) Frame = +2 Query: 23066 LFAGIGGLELGMARSGHHTKLLCENDACARAVLDA--RFPEVPKHGDIRTLER-----LP 23224 LFAGIGG LG+ ++GH CE D AR A ++ DI T+ L Sbjct: 6 LFAGIGGFRLGLEQAGHECVGFCEIDKFARQSYKAIHNTEGEREYHDITTVSNEEWRTLR 65 Query: 23225 KDTSLVTAGFPCQDLSQAGKTAGILGSRSG-LVGEVFRLLEQSTVPWILLENVPFMLQLS 23401 L+ GFPCQ S AGK G L G L E+ R EQ + LENV +L Sbjct: 66 GTVELICGGFPCQAFSIAGKRKGFLDETRGTLFFEIARAAEQIKPRTLFLENVRGLLSHD 125 Query: 23402 RGRAMDVIVQGFETLGYRWAYRVVDTRAFGLPQRRERVFFLASL 23533 +GR I+ + LGY +++++++ FG+PQ RERVF + L Sbjct: 126 KGRTFRTIISTLDELGYDAEWQILNSKNFGVPQNRERVFIIGHL 169 >ref|NP_813725.1|gp9.1 Length = 166 Score = 82.8 bits (203), Expect = 2e-15 Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 3/171 (1%) Frame = +2 Query: 23051 LSVAGLFAGIGGLELGM-ARSGHHTKLLCENDACARAVLDARFPEVPKHGDIRTL--ERL 23221 +++ L AG GGL + + A +G ++ E A V+ RFP+ P GD+R E L Sbjct: 1 MAILELCAGYGGLGIAVEALTGDKVTVVAEVHKAACEVMKYRFPDAPNIGDVRHARWEDL 60 Query: 23222 PKDTSLVTAGFPCQDLSQAGKTAGILGSRSGLVGEVFRLLEQSTVPWILLENVPFMLQLS 23401 + +TAGFPCQD+S AGK AGI G RSG+ + + ++ LENV + Sbjct: 61 RGEVDTITAGFPCQDISNAGKRAGIQGERSGIWFNIADAIRIIRPRYVYLENVGAI---- 116 Query: 23402 RGRAMDVIVQGFETLGYRWAYRVVDTRAFGLPQRRERVFFLASLEEDPRSV 23554 R R ++ +GY + + G P R R +F A+ DP + Sbjct: 117 RNRGQAAVLSSLSEIGYDAVWTSLRASDIGAPHERLR-WFCAATPSDPDGI 166 >ref|NP_612994.1|hypothetical protein Length = 348 Score = 75.5 bits (184), Expect = 4e-13 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Frame = +2 Query: 34079 HPNVVTLHDFGIHEGTPYLILELLRGETLQQRLKRGRLQPEEAVRIARDVASGLVHAHSR 34258 HPN+V + E Y+ + +L Q +K+ L E +R + SGL H HS+ Sbjct: 67 HPNIVQVQYAAQCESNIYIAMPFYHNGSLNQLMKKNNLTSREIIRYSIQFLSGLYHIHSK 126 Query: 34259 GVLHRDLKPGNVFLTEAGGVKLLDFGLARLLDRASLAG---GTPAYMAPEQLRGEPGDAR 34429 G++H D+KP N+ ++ L DFGL++L++ S A G ++ PE D Sbjct: 127 GLMHFDIKPNNIMISNRNEAMLSDFGLSQLVNEESRAAPEFGYHFHVPPEYFSLSTNDYN 186 Query: 34430 --ADVFSAGVVLWQMLTG 34477 D++ AG+ +++M G Sbjct: 187 FTYDIYQAGLTIYRMCVG 204 >ref|NP_049482.1|serine Length = 348 Score = 75.5 bits (184), Expect = 4e-13 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Frame = +2 Query: 34079 HPNVVTLHDFGIHEGTPYLILELLRGETLQQRLKRGRLQPEEAVRIARDVASGLVHAHSR 34258 HPN+V + E Y+ + +L Q +K+ L E +R + SGL H HS+ Sbjct: 67 HPNIVQVQYAAQCESNIYIAMPFYHNGSLNQLMKKNNLTSREIIRYSIQFLSGLYHIHSK 126 Query: 34259 GVLHRDLKPGNVFLTEAGGVKLLDFGLARLLDRASLAG---GTPAYMAPEQLRGEPGDAR 34429 G++H D+KP N+ ++ L DFGL++L++ S A G ++ PE D Sbjct: 127 GLMHFDIKPNNIMISNRNEAMLSDFGLSQLVNEESRAAPEFGYHFHVPPEYFSLSTNDYN 186 Query: 34430 --ADVFSAGVVLWQMLTG 34477 D++ AG+ +++M G Sbjct: 187 FTYDIYQAGLTIYRMCVG 204 >ref|NP_817858.1|gp7 Length = 196 Score = 73.2 bits (178), Expect = 2e-12 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 28/185 (15%) Frame = +2 Query: 23057 VAGLFAGIGGLELGMARS-GHHTKLLCENDACARAVLDARFPEVPKHGDIRTL--ERL-- 23221 + LF+G G L+ + ++ G CEND A+ VL R+P VP GD+R + R+ Sbjct: 9 IGSLFSGSGMLDRAVEQATGGRVVWHCENDRAAKLVLAERWPGVPNLGDVRRVNWSRIRW 68 Query: 23222 ---PKDTSLVTAGFPCQDLSQAGKTAGIL-GSRSGLVGEVFRLLEQSTVPWILLENVPFM 23389 P D ++ GFPC D+S AG+ AG+ G++SGL E R ++ +++ENV + Sbjct: 69 SLGPVD--ILCGGFPCTDISPAGRQAGLAPGTQSGLWVEFVRAIDTLRPQTVVIENVRNL 126 Query: 23390 LQLSRG-------------------RAMDVIVQGFETLGYRWAYRVVDTRAFGLPQRRER 23512 L + R + ++ LG+ + VV G P RR+R Sbjct: 127 LHVRANIRSTLGRMGPDQRDMAGDPRGIGAVLGDLADLGFDAEWEVVPASDAGAPHRRQR 186 Query: 23513 VFFLA 23527 +F +A Sbjct: 187 IFVVA 191 >ref|NP_665998.1|putative C5-cytosine methyltransferase Length = 283 Score = 63.5 bits (153), Expect = 1e-09 Identities = 56/197 (28%), Positives = 83/197 (42%), Gaps = 20/197 (10%) Frame = +2 Query: 23066 LFAGIGGLELGMARSGHHTKLLCENDACARAVLDARF-----------PEVPKHGDIR-- 23206 LF+GIGG +LG +R+G + E + A A P V DI Sbjct: 34 LFSGIGGFDLGFSRAGFKNLVAVEANQDAADTYRANLINDCENYGQDEPPVLMERDITKV 93 Query: 23207 -TLERLPK------DTSLVTAGFPCQDLSQAGKTAGILGSRSGLVGEVFRLLEQSTVPWI 23365 T E L + V+ G PCQ S GK R+ L E+ R++ Q+ + Sbjct: 94 ATWEILEAAGIGVGQLTAVSGGPPCQGFSHIGKREED-DPRNELYLEMVRIVHQAKPVFF 152 Query: 23366 LLENVPFMLQLSRGRAMDVIVQGFETLGYRWAYRVVDTRAFGLPQRRERVFFLASLEEDP 23545 ++ENVP + + G A+ + + FE GY + D +G+PQ RERV + Sbjct: 153 VMENVPGLATMHDGEAIMEVCENFEAGGYEVTWDKHDAADYGVPQHRERVLVIGKR---- 208 Query: 23546 RSVLFADEAGAPEQEDP 23596 D G PE+ +P Sbjct: 209 -----VDVMGMPEEGNP 220 >ref|NP_046694.1|modification methylase Length = 443 Score = 55.8 bits (133), Expect = 3e-07 Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 38/201 (18%) Frame = +2 Query: 23051 LSVAGLFAGIGGLELGMARSGHHTKLLCENDACARAVLD-ARFPEVPKHGDIRTLERLPK 23227 L V LF+GIG E + G +L+ ++ A+ V + ++ + + K Sbjct: 4 LRVMSLFSGIGAFEAALRNIGVDYELIGFSEIDKYAIKSYCAIHNVSETLNVGDISKAKK 63 Query: 23228 DT----SLVTAGFPCQDLSQAGKTAGI--------------------------------- 23296 D L+T+GFPC S AG G+ Sbjct: 64 DNIPYFDLLTSGFPCPTFSVAGGRDGMEYKCSNCSHEHLITYEDYKKGVKCPKCEAVSKA 123 Query: 23297 LGSRSGLVGEVFRLLEQSTVPWILLENVPFMLQLSRGRAMDVIVQGFETLGYRWAYRVVD 23476 R L E L E+ +++LENV ++ G+ + +I + +GYR +++ Sbjct: 124 KDERGTLFFETALLAEEKKPKFVILENVKGLINSGNGQVLRIISETMNNIGYRIDLELLN 183 Query: 23477 TRAFGLPQRRERVFFLASLEE 23539 ++ F +PQ RERV+ + E+ Sbjct: 184 SKFFNVPQNRERVYIIGIRED 204 >ref|NP_945098.1|gp67 Length = 433 Score = 53.1 bits (126), Expect = 2e-06 Identities = 42/118 (35%), Positives = 55/118 (46%), Gaps = 13/118 (11%) Frame = +2 Query: 23066 LFAGIGGLELGMARS------GHHTKLLCENDACARAVLDA-----RFPEVPKHGDIRTL 23212 L AG+G L G+ + GH T E +A A A L A + P D+ T Sbjct: 11 LCAGVGMLGEGVRTALEHFGIGHRTVCYVEREATAAAQLAALMEAEAIDQAPIWSDLLTF 70 Query: 23213 ERLP--KDTSLVTAGFPCQDLSQAGKTAGILGSRSGLVGEVFRLLEQSTVPWILLENV 23380 + V AGFPCQDLS AG+ AG+ G RSGL V + + ++LENV Sbjct: 71 DGAAWRGRVDCVIAGFPCQDLSVAGRRAGLDGKRSGLFFRVADIADDCGAWLLVLENV 128 >ref|NP_878240.1|Mth Length = 312 Score = 50.8 bits (120), Expect = 1e-05 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 1/158 (0%) Frame = +2 Query: 23054 SVAGLFAGIGGLELGMARSGHHTKLLCENDACARAVLDARFPEVPKH-GDIRTLERLPKD 23230 +V LF+G GG + G+ +G + + + AR V PE GDI L+ P Sbjct: 3 TVVSLFSGCGGSDAGVLNAGFNVLMANDILPYARDVYLENHPETDYILGDISGLQSFPS- 61 Query: 23231 TSLVTAGFPCQDLSQAGKTAGILGSRSGLVGEVFRLLEQSTVPWILLENVPFMLQLSRGR 23410 L+ +PCQ SQ G + L E R L + ++ENV M++ + Sbjct: 62 AELLIGCYPCQGFSQGGARKADRKINT-LYLEFARALSKIKPKAFIVENVSGMVRRNFEH 120 Query: 23411 AMDVIVQGFETLGYRWAYRVVDTRAFGLPQRRERVFFL 23524 + + FE GY + ++++ +G+ Q R+R+F + Sbjct: 121 LLKDQFKVFEEAGYTVSSQILNASHYGVSQDRKRIFIV 158 >ref|NP_944253.1|hypothetical protein; similar to DNA methyltransferase amino terminus Length = 205 Score = 47.0 bits (110), Expect = 1e-04 Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 34/159 (21%) Frame = +2 Query: 23156 AVLDARFPEVPKHGDIRTLER--LPKDTSL---VTAGFPCQDLSQAGKTAGILGSRSGLV 23320 AVL +P+VP GD+ + R L ++ + + G PCQ S AG + R L Sbjct: 36 AVLAHHYPDVPNLGDMTKITRAVLAREVEVPDVLVGGTPCQAFSLAGLRESLSDERGNLT 95 Query: 23321 GEVFRLLE--------QSTVPWILL-ENVPFMLQLSRGRAMDVIVQGF----ETL---GY 23452 + L++ P +++ ENVP +L ++ A + G E L G Sbjct: 96 LKFVELIDAIDHVRRLDGAAPAVVVWENVPGVLS-TKDNAFGCFLAGLAGEDEPLVAPGG 154 Query: 23453 RWA-------------YRVVDTRAFGLPQRRERVFFLAS 23530 RWA +R +D + FG+ QRR RVF +AS Sbjct: 155 RWANAGCVYGPQRAVAWRTLDAQYFGVAQRRRRVFVVAS 193 >ref|YP_006537.1|Dmt Length = 754 Score = 42.4 bits (98), Expect = 0.003 Identities = 56/233 (24%), Positives = 82/233 (35%), Gaps = 60/233 (25%) Frame = +2 Query: 23051 LSVAGLFAGIGGLELGMARSGHHTKLLCENDACARAVLDARFPEVPKHGDIRTLERLP-- 23224 L + +GI + G E + AVL R+P V GD+ L + Sbjct: 4 LCYGSVCSGIEAASIAWEPLGMRPAWFAEIEPFPSAVLAHRWPHVANLGDMTKLAKKVLA 63 Query: 23225 ---KDTSLVTAGFPCQDLSQAGKTAGILGSRSGLVGEVFRL------------LEQSTVP 23359 + ++ G PCQ S AG G+ R L + L L+ + + Sbjct: 64 GEIESPDVLVWGTPCQAFSIAGLRGGLDDERGALTLKYVELANAIDDKRSESFLKPTVIV 123 Query: 23360 WILLENVPFMLQLSRGRAMDVIVQGF-----------------ETLGYRW---------- 23458 W ENVP +L S A + G +RW Sbjct: 124 W---ENVPGVLS-SADNAFGCFLAGLAGEDAPFEPGDRPESGKSNAFWRWDGKTGCHAPK 179 Query: 23459 --------------AYRVVDTRAFGLPQRRERVFFLAS--LEEDPRSVLFADE 23569 A+R++D + FG+ QRR RVF +AS + DP +VLF E Sbjct: 180 WPQCGCIYGPQRKVAWRILDAQYFGVAQRRRRVFVVASARTDLDPATVLFEFE 232 Score = 38.1 bits (87), Expect = 0.065 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%) Frame = +2 Query: 23717 LLPSGEIVKPALRDLERLQGFQPDWTKPAEAV-AKRGYRWKLVGNAVTVDVAAWIGDRL- 23890 L+P+ + K +L L+ PD ++ A+ A G R+K +GN++ + V WIGDR+ Sbjct: 404 LIPTEKRKKVNSDELAYLRNHYPDLSEEEAAMLAADGPRYKAIGNSMAIPVMRWIGDRIT 463 Query: 23891 ---ARPLPPVNAVGQRLLPGSAWPRAAWNVGDGRF 23986 R +++ P + + R+ + G+F Sbjct: 464 KAVCRQKEGSETKERKVKPAAEFERSIFKWAGGKF 498 >ref|NP_848249.1|cytosine methylase Length = 389 Score = 37.4 bits (85), Expect = 0.11 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 3/105 (2%) Frame = +2 Query: 23222 PKDTSLVTAGFPCQDLSQAGKTAGILGSRSGLVGEVFRLLEQSTVPWILLENVPFMLQLS 23401 P D ++ T PCQ S AGK G R L F L+ + + E Q++ Sbjct: 70 PDDKTVWTGSCPCQPFSAAGKGDGFADERH-LWPHFFHLISERRPQHVFGE------QVA 122 Query: 23402 RGRA---MDVIVQGFETLGYRWAYRVVDTRAFGLPQRRERVFFLA 23527 G A D++ E +GY + + G P RER +++A Sbjct: 123 AGNANTWFDLVQADLEGVGYTFGLVPFTSAGIGAPHIRERAYWVA 167 >ref|NP_046954.1|gp58 Length = 331 Score = 37.0 bits (84), Expect = 0.14 Identities = 32/102 (31%), Positives = 42/102 (41%) Frame = +2 Query: 23222 PKDTSLVTAGFPCQDLSQAGKTAGILGSRSGLVGEVFRLLEQSTVPWILLENVPFMLQLS 23401 P S+ TA PCQ S AGK G L FRL+++ P I E V L Sbjct: 68 PDSRSVWTASLPCQPWSSAGK-GGKFDDERHLWPVFFRLVKECRPPVIFGEQVSSKDGLE 126 Query: 23402 RGRAMDVIVQGFETLGYRWAYRVVDTRAFGLPQRRERVFFLA 23527 A+ E GY A + G P R+R+F++A Sbjct: 127 WFSAVQT---DLENAGYAVAALDTCAASVGAPHIRQRIFWMA 165 >ref|YP_164274.1|DNA cytosine methyltransferase Length = 687 Score = 35.8 bits (81), Expect = 0.32 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 6/101 (5%) Frame = +2 Query: 23261 QDLSQAGKTAGILGSRSGLVGEVFRLLEQSTVPWILLENVPFMLQL------SRGRAMDV 23422 +++ Q + ++ R G V +L P E+VP Q RG+ Sbjct: 139 ENVKQILQWGPLIAKRDRSTGRVVKLDGSVAAPG---EHVPVQQQFLIPDPKRRGQTWRR 195 Query: 23423 IVQGFETLGYRWAYRVVDTRAFGLPQRRERVFFLASLEEDP 23545 V E +GY+ +RV+ FG P RER+F +A + P Sbjct: 196 FVHLLEGMGYQVEWRVIKACDFGAPTSRERLFMIARSDGHP 236 >ref|NP_944302.1|conserved phage protein Length = 532 Score = 35.8 bits (81), Expect = 0.32 Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 6/190 (3%) Frame = -3 Query: 36672 TLPSLEASAQRRPSRLTAAENRPSGSAGNGARSSPSGPNSRSVPPCSGTSRVPSGATTAR 36493 T +++A+ R + A + R G P GP + PP + P+ Sbjct: 38 TKDAMDAAKAEREDAIKAEQARLVGLG-------PQGPQGPAAPPAPDPNAAPATTQPVD 90 Query: 36492 NTGRSVLMIRGGEPSSGHTCAEASSCDDEMTALPSGVQVTAVSTAPWPRNTSGVPVPSAR 36313 + + + +PS+ A A+ T + AP T +P + + Sbjct: 91 MSTPTATPLPAQQPSAAPAAAPAT-------------PTTTTTPAPSSPQTPQIPPDAMK 137 Query: 36312 HTRTV----LSSEPLAMSVPSGLNAADSTGPSCPRSSRTSAPVAASHTRTVRSSEEVTNV 36145 T ++ P S A D S S + PV + TR + E +T+V Sbjct: 138 GTLMADSGSMAPAPTPADAVSAARAVDKPAQSGTTGSIAATPVVQAATRGINGGEPMTDV 197 Query: 36144 --RSVGSRSA 36121 R++ +SA Sbjct: 198 QARALAEKSA 207 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,432,539 Number of Sequences: 14420 Number of extensions: 1957441 Number of successful extensions: 8414 Number of sequences better than 0.5: 21 Number of HSP's better than 0.5 without gapping: 4412 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8342 length of database: 3,019,461 effective HSP length: 115 effective length of database: 1,361,161 effective search space used: 17474584918 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig58 (41,158 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_047372.1|putative maturation protein 74 9e-13 ref|NP_039614.1|gene IV product 72 4e-12 ref|NP_040655.1|unknown protein 70 2e-11 ref|NP_040579.1|G IV protein 69 5e-11 ref|NP_510894.1|phage assembly protein 68 6e-11 ref|NP_047359.1|maturation protein 68 8e-11 ref|YP_025041.1|putative transposase B 40 0.018 ref|NP_758949.1|ORF58 39 0.040 ref|NP_817395.1|gp57 37 0.12 ref|NP_040602.1|Tail fiber protein 35 0.45 >ref|NP_047372.1|putative maturation protein Length = 500 Score = 74.3 bits (181), Expect = 9e-13 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 5/166 (3%) Frame = -1 Query: 34375 FSVMLNLLEQSNLAKTLAEPTLVAMSGQEAAFLAGGELP--IPLASTFGQTAV---EWKK 34211 F+ ++ + S+ + L+ P ++ M + G +P + ++T G T+V E K Sbjct: 277 FNALVKAISGSSDTRLLSRPNILIMDRERGYITVGQNVPFLVSNSTTDGGTSVQRIERKD 336 Query: 34210 FGIQLRFTPTVIGDAIHLRLKAEVSDLDPTTAVTVGGTTIPGLVSRQSETTIRLGDGQSF 34031 G+ L TP V+GD + L + E S + T T+ I R TT+ + GQ+ Sbjct: 337 VGVSLEVTPHVMGDDVILVINQESSSV---TDSTIAADIITN--KRTLMTTVAVKSGQTI 391 Query: 34030 AVAGLISDKVRSQSARVPVLGSIPILGALFRSQAYQRDETELLVVV 33893 + GLISD+ R+ + VPVL P++G LFRS + + + EL VV+ Sbjct: 392 VLGGLISDEKRNVESGVPVLKDTPLIGGLFRSTSTKNVQKELRVVI 437 >ref|NP_039614.1|gene IV product Length = 428 Score = 72.0 bits (175), Expect = 4e-12 Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Frame = -1 Query: 34372 SVMLNLLEQSNLAKTLAEPTLVAMSGQEAAFLAGGELPIPLASTFGQTA--------VEW 34217 ++ L ++ + +K ++ P ++ SGQ G +P G+ A +E Sbjct: 257 ALSLQAVQSDSNSKVISTPRILTQSGQSGYISVGQNVPFVTGKVTGEAASVNNPFQTIER 316 Query: 34216 KKFGIQLRFTPTVIGDAIHLRLKAEVSDLDPTTAVTVGGTTIPGLVSRQSETTIRLGDGQ 34037 + G+ L+ TP V+G+ L L + D + + I RQ +TT+++ DGQ Sbjct: 317 RDVGVSLKVTPVVMGNG-QLVLTIDTK-ADSLSNQAIASDIITN--QRQIQTTVQIKDGQ 372 Query: 34036 SFAVAGLISDKVRSQSARVPVLGSIPILGALFRSQAYQRDETELLVVVTARLAK 33875 + + GLIS VP + IP++G LFRS + +D+ + V++TA + + Sbjct: 373 TLLLGGLISSNQFDSDRSVPFMSKIPLIGWLFRSHSDSKDDRTMFVLLTAHVIR 426 >ref|NP_040655.1|unknown protein Length = 430 Score = 69.7 bits (169), Expect = 2e-11 Identities = 44/162 (27%), Positives = 83/162 (51%) Frame = -1 Query: 34366 MLNLLEQSNLAKTLAEPTLVAMSGQEAAFLAGGELPIPLASTFGQTAVEWKKFGIQLRFT 34187 + +E + ++ PTL+ + Q A+ L G ELP ++ G T+V +K + L Sbjct: 248 LFTAMENEGNGRVVSRPTLLTLDRQSASVLRGTELPYQQSAGDGATSVAFKHAALSLEVK 307 Query: 34186 PTVIGDAIHLRLKAEVSDLDPTTAVTVGGTTIPGLVSRQSETTIRLGDGQSFAVAGLISD 34007 P + D + ++ VS P + + G +P + + + TTIR+ GQ+ + G+ S Sbjct: 308 PVISPDN-SIVIEVLVSRDSPNFSNAIDG--VPPIDTNRLVTTIRVPHGQTVVLGGVYST 364 Query: 34006 KVRSQSARVPVLGSIPILGALFRSQAYQRDETELLVVVTARL 33881 + S+RV + IP +G LF+ + + ++ ELL+ +T R+ Sbjct: 365 INQQGSSRVSGISRIPGIGRLFKKKEHVTEQYELLIFLTPRI 406 >ref|NP_040579.1|G IV protein Length = 437 Score = 68.6 bits (166), Expect = 5e-11 Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 8/174 (4%) Frame = -1 Query: 34372 SVMLNLLEQSNLAKTLAEPTLVAMSGQEAAFLAGGELPIPLASTFGQTA--------VEW 34217 ++ + ++ + +K ++ P ++ SGQ G +P G+ A +E Sbjct: 266 ALSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQNVPFVTGKVTGEAANVNNPFQTIER 325 Query: 34216 KKFGIQLRFTPTVIGDAIHLRLKAEVSDLDPTTAVTVGGTTIPGLVSRQSETTIRLGDGQ 34037 + G+ L+ TP V+G+ L L + T+ +T R +TT+++ DGQ Sbjct: 326 RDVGVSLKVTPVVMGNG-QLVLTIDTKADSLTSQMTASDIITN---QRHMQTTVQIKDGQ 381 Query: 34036 SFAVAGLISDKVRSQSARVPVLGSIPILGALFRSQAYQRDETELLVVVTARLAK 33875 + + GLI + VP S+P++G LFRS + +E + V++TA + K Sbjct: 382 TLLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNERTMFVLLTAHVIK 435 >ref|NP_510894.1|phage assembly protein Length = 426 Score = 68.2 bits (165), Expect = 6e-11 Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 15/189 (7%) Frame = -1 Query: 34396 SQGGQFPF------SVMLNLLEQSNLAKTLAEPTLVAMSGQEAAFLAGGELPIPLASTFG 34235 S GG F + + L+ ++ +K L+ P ++ +SGQ+ + G +P G Sbjct: 241 SAGGSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTG 300 Query: 34234 QTA--------VEWKKFGIQLRFTPTVI-GDAIHLRLKAEVSDLDPTTAVTVGGTTIPGL 34082 ++A +E + GI + P + G I L + ++ L +T + T Sbjct: 301 ESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITN---- 356 Query: 34081 VSRQSETTIRLGDGQSFAVAGLISDKVRSQSARVPVLGSIPILGALFRSQAYQRDETELL 33902 R TT+ L DGQ+ + GL K SQ + VP L IP++G LF S++ +E+ L Sbjct: 357 -QRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLY 415 Query: 33901 VVVTARLAK 33875 V+V A + + Sbjct: 416 VLVKATIVR 424 >ref|NP_047359.1|maturation protein Length = 429 Score = 67.8 bits (164), Expect = 8e-11 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Frame = -1 Query: 34396 SQGGQFPF------SVMLNLLEQSNLAKTLAEPTLVAMSGQEAAFLAGGELPIPLASTFG 34235 S GG F + L LE S+ + L+ P ++ MSGQ F AG +P G Sbjct: 244 STGGSFGIFNGNILGLSLKALETSSKSTLLSMPRILTMSGQPGTFTAGQNVPFVTGRVTG 303 Query: 34234 QTA--------VEWKKFGIQLRFTPTVI-GDAIHLRLKAEVSDL-DPTTAVTVGGTTIPG 34085 + A +E GI L+ P V G + + + + D TA + T Sbjct: 304 EAANVNNPFQTIERHDVGISLKVVPVVTPGGLLIMDVSTNADSISDSQTASDIITNT--- 360 Query: 34084 LVSRQSETTIRLGDGQSFAVAGLISDKVRSQSARVPVLGSIPILGALFRSQAYQRDETEL 33905 R TT++L GQ+ + G++ ++ + VP + IP++GALF S++ ++ L Sbjct: 361 ---RSISTTVQLKSGQTVLLGGMVDNRESDSDSSVPWVSKIPLIGALFTSKSSNANKRTL 417 Query: 33904 LVVVTARL 33881 +++ AR+ Sbjct: 418 YILIRARV 425 >ref|YP_025041.1|putative transposase B Length = 280 Score = 40.0 bits (92), Expect = 0.018 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Frame = +2 Query: 13709 DNGSEFTSHTVDAWAYERGIKLDFITPGKPTENGHIESFNGKFRDECLN-----ENWFIS 13873 D GS++TS + E I+ + G P +N +ESF+ + EC+ E++ + Sbjct: 181 DLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETA 240 Query: 13874 LDDARRKFEVFRVDYNEVRPHSSLDNQTP 13960 A FE YN R HSSL QTP Sbjct: 241 ---AAVLFEYVHAFYNRKRIHSSLGYQTP 266 >ref|NP_758949.1|ORF58 Length = 210 Score = 38.9 bits (89), Expect = 0.040 Identities = 19/40 (47%), Positives = 26/40 (65%) Frame = -2 Query: 33300 QVLAIFPAKGGMGATTLAANVAADLVRGGDRTCLVDLDLQ 33181 +++AI KGG G TT++ NVA+ L G + LVDLD Q Sbjct: 21 KLIAILNQKGGAGKTTISTNVASQLHADGHKVLLVDLDPQ 60 >ref|NP_817395.1|gp57 Length = 287 Score = 37.4 bits (85), Expect = 0.12 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 1/121 (0%) Frame = +2 Query: 32417 WSSPFRSWKSCGAVSATIAWEAAGSFARCLRRSARPTGYLRANIRRSMPGRRRSWSAPES 32596 WS+ +W + G+ + + AW AAGS AR SA + A +WSA ES Sbjct: 142 WSA---AWSAAGSAAWSAAWSAAGSAARSAAGSAAGSAAWSA---AGSAAWSAAWSAAES 195 Query: 32597 LRASAETSRASADRGASSITVEPRCTARLA-ETKSLATVAVTGTPSVSAITSGVMFEARR 32773 SA S A + G+++ + A A + G+ + SA S + E R Sbjct: 196 AAGSAAWSAAWSAAGSAAWSAAWSAAGSAAGSAAESAARSAAGSAAESAAWSAALIEFTR 255 Query: 32774 Q 32776 + Sbjct: 256 K 256 >ref|NP_040602.1|Tail fiber protein Length = 401 Score = 35.4 bits (80), Expect = 0.45 Identities = 39/164 (23%), Positives = 71/164 (43%) Frame = +2 Query: 29231 TGAGARAQREQRDQASAADHRPPPSKGNRRSAMLTTAGPSTTANTQGRMQRTSGSDIFTD 29410 +GA A + + + SAA + + ++A T+AG + T+ T + S Sbjct: 171 SGAEAASAKATEAEKSAA------AAESSKNAAATSAGAAKTSETNAAASQQS------- 217 Query: 29411 T*AAFSSARCIRRMRIPSAWMRSAAPTLVPNSSVCASVAESDRSSGAPVRSAMRRNAEMR 29590 AA S++ + + R A S A +E++ SS A ++ AE Sbjct: 218 --AATSASTAATKASEAATSARDAVA-----SKEAAKSSETNASSSAGRAASSATAAENS 270 Query: 29591 AMPAFTSRNTRRSSFESSGCASATSSETRCSAESSPRPASTQVT 29722 A A TS RSS ++ +++ +++ + +A S AST+ T Sbjct: 271 ARAAKTSETNARSSETAAERSASAAADAKTAAAGSASTASTKAT 314 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 118,707,581 Number of Sequences: 14420 Number of extensions: 2196748 Number of successful extensions: 9892 Number of sequences better than 0.5: 10 Number of HSP's better than 0.5 without gapping: 4884 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9846 length of database: 3,019,461 effective HSP length: 115 effective length of database: 1,361,161 effective search space used: 18515873083 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig59 (44,864 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_932363.1|hypothetical protein 360 7e-99 ref|NP_597931.1|PhoH-like protein 135 3e-31 ref|YP_006926.1|putative PhoH-like protein 129 3e-29 ref|NP_899539.1|PhoH domain protein 101 5e-21 ref|YP_195230.1|PhoH 86 2e-16 ref|YP_024453.1|putative PhoH-related protein 73 3e-12 ref|YP_164047.1|putative transposase B subunit 50 1e-05 ref|YP_024681.1|gp08 50 2e-05 ref|NP_932300.1|ORF5 38 0.074 ref|NP_039604.1|hypothetical protein 38 0.074 ref|NP_612899.1|hypothetical protein 38 0.097 ref|NP_859265.1|hypothetical protein 36 0.28 ref|NP_859099.1|hypothetical protein 36 0.28 ref|NP_050557.1|hypothetical protein 36 0.28 ref|NP_049519.1|putative tail fiber protein 36 0.28 >ref|NP_932363.1|hypothetical protein Length = 389 Score = 360 bits (924), Expect = 7e-99 Identities = 196/367 (53%), Positives = 261/367 (71%), Gaps = 7/367 (1%) Frame = -1 Query: 29189 DPQIAKLIREETRRQAEGLELIASENFVSPAVLEALGSTLTNKYAEGYPGKRYYGGCEVV 29010 D + +I +E RQ + LIASEN+VS V++A GS TNKYAEGYPGKRYYGGC Sbjct: 3 DKVVQSIIEDEAMRQYCEVCLIASENYVSDDVMKAQGSIFTNKYAEGYPGKRYYGGCVKA 62 Query: 29009 DQVEQLAIDRAKQLFGADHANVQPHAGSQANMAAYFALAKPGDTVLAMSLNFGGHLTHGS 28830 D++E LAI+RAK+LF + ANVQPH+GSQAN A Y AL KPGD+VLAMSL+ GGHLTHG Sbjct: 63 DEIENLAIERAKELFSCNFANVQPHSGSQANQAVYQALLKPGDSVLAMSLDCGGHLTHGH 122 Query: 28829 PVNFSGKLFKIVPYGLRQSDETIDMDEVARLAREHRP-RILMVGASAYSRTLH---FDRF 28662 N SGK++ YG+ SD TI++++V R +++++G SAY ++ + + Sbjct: 123 KANASGKIYDFHHYGV-FSDGTININQVVEQIRTIPDLKLVVIGYSAYVGRINEATYAKI 181 Query: 28661 AEIANEVGAAMVVDMAHIAGLVAAGLHPSPVP-HSEIVTTTTHKTLRGPRGGMILCREAH 28485 A+ A+ +GA ++VDMAH AG VAA LH +P+ +++VTTTTHKTLRGPRGG+IL +A Sbjct: 182 ADAAHSIGAKLMVDMAHFAGFVAARLHANPLKWGADVVTTTTHKTLRGPRGGLILTNDAD 241 Query: 28484 -AKTLNSQIFPGIQGGPLEHVIAAKAVAFGEALRPEFKEYQRRIVENAQVLAEGLKSAGL 28308 AK +NS IFPGIQGGPL HVIAAKAV FGEALR ++ +Y ++ NA ++ E +AG Sbjct: 242 IAKKVNSAIFPGIQGGPLLHVIAAKAVCFGEALREDYVDYMIQVAHNASIMYETFDAAGH 301 Query: 28307 RLVSGGTDNHLMLVDLRPK-KLTGKVAEEALGKAGITVNKNMIPWDPEKPMTTSGIRVGT 28131 +LV G T+NH +L++ LTG+ AE+ L K GI VNKNM+P D P+ TSGIR+G+ Sbjct: 302 KLV-GFTENHQVLLNTYESFGLTGREAEQLLEKEGIIVNKNMLPNDTRSPVETSGIRIGS 360 Query: 28130 PALSTRG 28110 PA++TRG Sbjct: 361 PAMTTRG 367 >ref|NP_597931.1|PhoH-like protein Length = 384 Score = 135 bits (341), Expect = 3e-31 Identities = 77/203 (37%), Positives = 110/203 (54%) Frame = -1 Query: 4022 ITPKGLAQKRYIQAIRDDDIVFGVGPAGTGKTYLAMAMAVSYLVERRVKRIVLTRPAVEA 3843 + P+ QK I A++ VF +GPAGTGKTY+ A + + +IV+TRP V Sbjct: 178 LVPRTDKQKDLIDALKTSRQVFILGPAGTGKTYVTATYASDLYTTKEIDKIVITRPHVAV 237 Query: 3842 GERLGFLPGDIAEKVNPYLRPLHDALFDMVDYEKATAFIERGTVEVAPLAFMRGRTLNDA 3663 G+ LGFL GD+ EK P+ P+ D L + I+ G +E+APLA MRGR+ ++A Sbjct: 238 GKELGFLKGDLTEKTMPWALPVLDVLEKHLGKGAVETGIKNGNIEMAPLALMRGRSFDNA 297 Query: 3662 FIILDEAQNTTAEQMKMFLTRLGYGSKAVITGDVTQVDLPSGRGSGLVEVQKVLRGVEGV 3483 FII+DE QN + ++KM LTR+G G+ V+ GD Q DL G V + + V Sbjct: 298 FIIVDETQNISTHELKMLLTRVGEGTTIVLNGDAQQSDLKEADGLSKV-IHLAKKHQLPV 356 Query: 3482 SFCMFSEVDVVRHPLVQEVVRAY 3414 F D+VR + VR + Sbjct: 357 PIIEFGVDDIVRSDITAMWVRTF 379 >ref|YP_006926.1|putative PhoH-like protein Length = 250 Score = 129 bits (323), Expect = 3e-29 Identities = 67/191 (35%), Positives = 107/191 (56%), Gaps = 2/191 (1%) Frame = -1 Query: 4013 KGLAQKRYIQAIRDDDIVFGVGPAGTGKTYLAMAMAVSYLVERR--VKRIVLTRPAVEAG 3840 K QK YI I+++ + G+G GTGKT++ +A LV+ +++++L RP G Sbjct: 45 KNREQKSYINMIKNNTVTVGIGEPGTGKTFIPSVLAAQELVDIHSDIEQVILVRPNEPLG 104 Query: 3839 ERLGFLPGDIAEKVNPYLRPLHDALFDMVDYEKATAFIERGTVEVAPLAFMRGRTLNDAF 3660 + LG LPGD+AEK+ P+L P+ D + + ++ER ++ + RGRT N+++ Sbjct: 105 KSLGMLPGDLAEKLEPWLEPIADGMKWAIGDHAYKGYVERQKIKFLAIEHARGRTFNNSY 164 Query: 3659 IILDEAQNTTAEQMKMFLTRLGYGSKAVITGDVTQVDLPSGRGSGLVEVQKVLRGVEGVS 3480 +I+DEAQN + E M LTR+G + +I GD+ Q D+ SGL + +V E Sbjct: 165 VIVDEAQNISVEAMVCLLTRVGQDCRLIICGDIAQKDIKG--DSGLALLMEVYEKYENAP 222 Query: 3479 FCMFSEVDVVR 3447 F M +D VR Sbjct: 223 FSMIELIDNVR 233 >ref|NP_899539.1|PhoH domain protein Length = 235 Score = 101 bits (252), Expect = 5e-21 Identities = 61/200 (30%), Positives = 106/200 (53%), Gaps = 15/200 (7%) Frame = -1 Query: 4001 QKRYIQAIRDD-------DIVFGVGPAGTGKTYLAMAMAVSYLVERRVKRIVLTRPAVEA 3843 Q++Y A++++ VF +G AGTGKT+LA + ++ +P + Sbjct: 22 QEQYAAALQEEVGEDGSGAFVFAIGSAGTGKTWLATTLGADMYSAFDYTEFIILKPTLSC 81 Query: 3842 GERLGFLPGDIAEKVNPYLRPLHDALFDMVDYEKATAFIERGTVEVAPLAFMRGRTLNDA 3663 GE LG+LPG + EK+ P+++ + L D + +K + + P+ F+RG+T ++ Sbjct: 82 GEELGYLPGTLEEKMEPWIQTVTQPLKDRLGADKFKCDWNK-RIHAEPIQFVRGKTFDNC 140 Query: 3662 FIILDEAQNTTAEQMKMFLTRLGYGSKAVITGDVTQVD----LPSGRG--SGLVEVQKVL 3501 FI++DEAQN T +++ +TR+G +K V GD+ Q D +G+ SGL + + Sbjct: 141 FIVVDEAQNLTKTEIQTIMTRIGENTKMVFCGDLKQDDHKMIYRTGQKEISGLAWMVNEI 200 Query: 3500 RGVE--GVSFCMFSEVDVVR 3447 R + G+ F+ DVVR Sbjct: 201 RNQQRSGIEIIEFTNKDVVR 220 >ref|YP_195230.1|PhoH Length = 250 Score = 86.3 bits (212), Expect = 2e-16 Identities = 55/192 (28%), Positives = 102/192 (53%), Gaps = 10/192 (5%) Frame = -1 Query: 3962 VFGVGPAGTGKTYLAMAMAVSYLVERRVK--RIVLTRPAVEAGERLGFLPGDIAEKVNPY 3789 ++ G AGTGKT++A+ +A+ +++ ++ + R V E +GFLPG +K + Y Sbjct: 54 IYAYGCAGTGKTFVALYLALKDVLDEYTPYDKVYIVRSLVATRE-IGFLPGTHEDKASLY 112 Query: 3788 LRPLHD---ALFDMVDYEKATAFIE----RGTVEVAPLAFMRGRTLNDAFIILDEAQNTT 3630 P + ++F+M D E + T+ +F+RG TL+++ II+DE QN Sbjct: 113 QIPYKNMVKSMFEMPDDPSFEMLYENLKQQETISFWSTSFLRGSTLDNSIIIVDECQNLN 172 Query: 3629 AEQMKMFLTRLGYGSKAVITGDVTQVDL-PSGRGSGLVEVQKVLRGVEGVSFCMFSEVDV 3453 ++ +TR+G SK + GD Q DL + +G+++ Q++++ + S + D+ Sbjct: 173 FHELDSIMTRVGQDSKIIFCGDANQSDLQKTNERTGILDFQRIIQKMNEFSLIEYGIEDI 232 Query: 3452 VRHPLVQEVVRA 3417 VR LV+ + A Sbjct: 233 VRSGLVKSYLIA 244 >ref|YP_024453.1|putative PhoH-related protein Length = 246 Score = 72.8 bits (177), Expect = 3e-12 Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 15/183 (8%) Frame = -1 Query: 3968 DIVFGVGPAGTGKTYLAMAMAVSYLVERRVKRIVLTRPAVEAGERLGFLPGDIAEKVNPY 3789 +I++ AGTGKT ++A A + + + K + + P E LG PG+ EK Y Sbjct: 52 EILWNESQAGTGKTMCSVACAYADYLNKNRKLVFIISPV---SEDLGSRPGNQTEKEMAY 108 Query: 3788 LRPLHDALFD--------------MVDYEKATAFIERGTVEVAPLAFMRGRTLNDAFIIL 3651 LHDAL + M D K + +++ L F+RG L DA II+ Sbjct: 109 FMGLHDALIELNMNPEQQITEMLMMEDNVKEDKLGDCWVSQISHL-FLRGGNLRDATIII 167 Query: 3650 DEAQNTTAEQMKMFLTRL-GYGSKAVITGDVTQVDLPSGRGSGLVEVQKVLRGVEGVSFC 3474 +EAQN ++K LTR+ S ++ G+ Q+DL + SG + + + EG F Sbjct: 168 NEAQNFKRSELKKVLTRVHTKNSTVIVEGNFKQIDLKNESKSGFGDYMEYFKNYEGAVFH 227 Query: 3473 MFS 3465 F+ Sbjct: 228 NFT 230 >ref|YP_164047.1|putative transposase B subunit Length = 390 Score = 50.4 bits (119), Expect = 1e-05 Identities = 56/226 (24%), Positives = 89/226 (39%), Gaps = 23/226 (10%) Frame = -1 Query: 20654 FRLARKPFSKTPDPAFLFPSRQHAEALARLSHALEERELAVLTGEVGAGKTTLSRALVDA 20475 F + R PF + ++ S + H + GE GAGK+TL R LV Sbjct: 112 FDIRRDPFEELQSADDMYVSPDIRYVREAMYHVARHDGFLAVVGESGAGKSTLRRDLVH- 170 Query: 20474 FADRCRFSFVVHPALPAAQLLGAIAEGFGLPPARRKADAFSALAEHVARLDA-----DGR 20310 R + P +P + A+ + R A+ VA L+ + R Sbjct: 171 -----RLNTENAPVIPIEPYVLAMEDSDTKGKTLRVTHIAEAMMAAVAPLERPKSSPEAR 225 Query: 20309 FA----------------VVVVDEAQLLSARAAFDELRLLTNLCADDRALVGLVLVGQPE 20178 FA V++++EA L A L+ L L LV ++L+GQPE Sbjct: 226 FAQLHRALKVSHAAGFKHVLIIEEAHSLPI-ATLKHLKRLRELEDGFTKLVSIILIGQPE 284 Query: 20177 LRDRLRARGGEA--FLQRVGVAYHLGALDAPETGRYLEHRLAVAGR 20046 L +L R G+ +QR+ + L ++ ++LE R AG+ Sbjct: 285 LGTKLSPRNGDVREVVQRIEIV-ELESIPVAAVEKHLEFRFGRAGK 329 >ref|YP_024681.1|gp08 Length = 404 Score = 49.7 bits (117), Expect = 2e-05 Identities = 61/231 (26%), Positives = 92/231 (39%), Gaps = 24/231 (10%) Frame = -1 Query: 20660 EHFRLARKPFS---KTPDPAFLFPSRQHAEALARLSHALEERELAVLTGEVGAGKTTLSR 20490 +HF L R PF+ ++ + F+ P ++ + + L + E G GKTTL R Sbjct: 118 KHFGLFRDPFADDIQSHEDMFVSPDIRYVREA--MFQTAKHGGLLAVVAESGGGKTTLMR 175 Query: 20489 ALVDAFADRCRFSFVVHPALPAAQ-----------------LLGAIA--EGFGLPPARRK 20367 L D V+ P + A + ++ A+A E P R Sbjct: 176 DLEDRVMRESHPIIVIKPYVLAMEDNDQKGKTLKATHIAEAIMAAVAPLEKVKSSPEARF 235 Query: 20366 ADAFSALAEHVARLDADGRFAVVVVDEAQLLSARAAFDELRLLTNLCADDRALVGLVLVG 20187 A AL E A G +V+DEA L A L+ L + L+ ++L+G Sbjct: 236 AQLHKALKES----HAAGYQHCLVIDEAHALPI-ATLKHLKRFFELEMGFKKLLSIILIG 290 Query: 20186 QPELRDRLRARGGEA--FLQRVGVAYHLGALDAPETGRYLEHRLAVAGRTD 20040 QPEL+ +L R + +QR + L LD P YL + GR D Sbjct: 291 QPELKVKLSERNQDVREVVQRCEMV-ELAPLDGPRLDEYLRFKF---GRLD 337 >ref|NP_932300.1|ORF5 Length = 488 Score = 38.1 bits (87), Expect = 0.074 Identities = 80/364 (21%), Positives = 109/364 (29%), Gaps = 71/364 (19%) Frame = +1 Query: 37783 GLCDTSAGTPGRCFDPPGGCVQGGNPCDGPSNCCSRLCVDPGSGAKVCQPAGGCRMTGDF 37962 G T +G+ G + V GG CS G + G +G + Sbjct: 34 GFSATDSGSNGHMW------VSGGQTGSSAVAACSAYVAVAYPGMVIDGYGGSGYCSGHW 87 Query: 37963 CDSTDAC---CNINDKVPTSQRISCDAEHTCDNGGSCN---PPGNICGASTDVNASQNCC 38124 + C CNI Q C + + GSC PP C + +N + Sbjct: 88 PSDPNQCGGSCNIG----VQQLSDCAPGYQLQSDGSCKSNTPPPPNCADPSLMNKYRG-- 141 Query: 38125 MPSTWNGSGKPACKPDSNNIMRCYGAPPGET----GSTCPTGY----------------- 38241 + + S P PD I C P G T TGY Sbjct: 142 --AGYTTSSSPDSVPDYICIKGCQYDPGGVTVTYPNPNSVTGYTSGGRAGASSGKSCDMT 199 Query: 38242 ------------DGSDPNCCIPQGDVC----QFRDQCCGL---APCVPDAQGVLRCGGSC 38364 + +DP P +VC +F Q G+ +P +P V GS Sbjct: 200 NWPQITLDVDLSNATDPKNLPPSPEVCAAQGRFYGQVNGVDVCSPAIPPGGSVSTNNGST 259 Query: 38365 IPTTG-------------TCTSNADCCSGTCTS------GKCAPAACGAV----GSTCST 38475 G T +SN C CT+ G CG+V S + Sbjct: 260 TTQPGGTGASAPAGTPPDTSSSNTTCDGQNCTTTTVVVGGGGRTVNCGSVHVSAASVPAA 319 Query: 38476 DGQCCSGFCDAD-SHACQPVCQRQSEACTVSAD-CCSGLSCAVPPGATHGSCVTDQSSCV 38649 G + C + Q CQ+ A D G C+ PP SC D SC Sbjct: 320 SGPATNDTCSTTVTVPQQQFCQQNPNAVVCKDDSAAGGADCSAPP-----SCSGDAISCA 374 Query: 38650 DLGQ 38661 L Q Sbjct: 375 ILSQ 378 >ref|NP_039604.1|hypothetical protein Length = 437 Score = 38.1 bits (87), Expect = 0.074 Identities = 47/178 (26%), Positives = 60/178 (33%), Gaps = 15/178 (8%) Frame = +1 Query: 37771 DCCSGLCDTSAGTPGRCFDPPGGCVQGG-NPCDGPSN----CCSRLCVDPGSGAKVC--- 37926 D C+ DT + G C PP C +G P GP + R V G C Sbjct: 112 DQCANADDTYNASTGICEPPPKECKEGELFPAKGPDSPVVTSGGRNYVGDGGAPTACYQS 171 Query: 37927 -------QPAGGCRMTGDFCDSTDACCNINDKVPTSQRISCDAEHTCDNGGSCNPPGNIC 38085 PA + G +T CN K T Q D+ G S NPP Sbjct: 172 CEYGGNPSPASCYLVKG---STTTGFCNYILK-GTGQSCGADSYTFSQTGDSLNPPDT-- 225 Query: 38086 GASTDVNASQNCCMPSTWNGSGKPACKPDSNNIMRCYGAPPGETGSTCPTGYDGSDPN 38259 +TD + + P W+ SG K ++ P T T P G G D N Sbjct: 226 -PNTDPSDPNDPGCPPGWSWSGTTCVKTPTD--------PTDPTDPTTPGGDGGGDGN 274 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 37.7 bits (86), Expect = 0.097 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 5/100 (5%) Frame = -2 Query: 33481 EGGPGEVALREDERPRGVQGGRPLARGELPRGARRREAHPGRR----DLGDRAP-GEQAH 33317 +G G+V + P G +G + P+G + G R D GD P GE+ Sbjct: 276 KGERGDVGAQGAVGPAGPRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGD 335 Query: 33316 PGRDAAPPGDPRVEVLDEPREVRQHLGGERPDDARRGEPG 33197 PG A P G P+ E + + GER D RGEPG Sbjct: 336 PGGPAGPQG-PKGERGEAGPQGPMGARGERGDTGPRGEPG 374 >ref|NP_859265.1|hypothetical protein Length = 645 Score = 36.2 bits (82), Expect = 0.28 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 5/100 (5%) Frame = -2 Query: 33481 EGGPGEVALREDERPRGVQGGRPLARGELPRGARRREAHPGRR----DLGDRAP-GEQAH 33317 +G G+V + P G +G + P+G + G R D GD P GE+ Sbjct: 276 KGERGDVGAQGAVGPAGPRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGD 335 Query: 33316 PGRDAAPPGDPRVEVLDEPREVRQHLGGERPDDARRGEPG 33197 PG A P G P+ E + + GER + RGEPG Sbjct: 336 PGGPAGPQG-PKGERGEAGPQGPMGARGERGETGPRGEPG 374 >ref|NP_859099.1|hypothetical protein Length = 645 Score = 36.2 bits (82), Expect = 0.28 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 5/100 (5%) Frame = -2 Query: 33481 EGGPGEVALREDERPRGVQGGRPLARGELPRGARRREAHPGRR----DLGDRAP-GEQAH 33317 +G G+V + P G +G + P+G + G R D GD P GE+ Sbjct: 276 KGERGDVGAQGAVGPAGPRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGD 335 Query: 33316 PGRDAAPPGDPRVEVLDEPREVRQHLGGERPDDARRGEPG 33197 PG A P G P+ E + + GER + RGEPG Sbjct: 336 PGGPAGPQG-PKGERGEAGPQGPMGARGERGETGPRGEPG 374 >ref|NP_050557.1|hypothetical protein Length = 645 Score = 36.2 bits (82), Expect = 0.28 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 5/100 (5%) Frame = -2 Query: 33481 EGGPGEVALREDERPRGVQGGRPLARGELPRGARRREAHPGRR----DLGDRAP-GEQAH 33317 +G G+V + P G +G + P+G + G R D GD P GE+ Sbjct: 276 KGERGDVGAQGAVGPAGPRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGD 335 Query: 33316 PGRDAAPPGDPRVEVLDEPREVRQHLGGERPDDARRGEPG 33197 PG A P G P+ E + + GER + RGEPG Sbjct: 336 PGGPAGPQG-PKGERGEAGPQGPMGARGERGETGPRGEPG 374 >ref|NP_049519.1|putative tail fiber protein Length = 645 Score = 36.2 bits (82), Expect = 0.28 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 5/100 (5%) Frame = -2 Query: 33481 EGGPGEVALREDERPRGVQGGRPLARGELPRGARRREAHPGRR----DLGDRAP-GEQAH 33317 +G G+V + P G +G + P+G + G R D GD P GE+ Sbjct: 276 KGERGDVGAQGAVGPAGPRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGD 335 Query: 33316 PGRDAAPPGDPRVEVLDEPREVRQHLGGERPDDARRGEPG 33197 PG A P G P+ E + + GER + RGEPG Sbjct: 336 PGGPAGPQG-PKGERGEAGPQGPMGARGERGETGPRGEPG 374 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 113,779,755 Number of Sequences: 14420 Number of extensions: 2022972 Number of successful extensions: 8775 Number of sequences better than 0.5: 15 Number of HSP's better than 0.5 without gapping: 4820 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8741 length of database: 3,019,461 effective HSP length: 116 effective length of database: 1,346,741 effective search space used: 19982942958 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig60 (43,932 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 39 0.056 ref|NP_817395.1|gp57 36 0.36 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 38.5 bits (88), Expect = 0.056 Identities = 64/223 (28%), Positives = 70/223 (31%), Gaps = 35/223 (15%) Frame = +1 Query: 3304 PQHHPGLTRGRVPERRVP--PARDLPGVPEPAVAPHVE-AQTEPAHHADL------RRVH 3456 P H G R R P+ P P R P P H A+T P A VH Sbjct: 37 PHPHLGPARDRSPDHPEPDHPCRRAPSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVH 96 Query: 3457 QAGARGGPDPQAVCHRHAQVQLAARQPELRPGLGHQRL--------IVRPDPHGRPRVPV 3612 A G P A L R PE G H R V P R R PV Sbjct: 97 PAAP--GCAPAAPAAPEYAPALRPRAPECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPV 154 Query: 3613 H-------LQHPG-----DPVAGPGAEPLRPRQRVAGRVEALEQP------RGVRRAHRE 3738 + P P G G R +RV RV +P R RR H E Sbjct: 155 EDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPE 214 Query: 3739 PLARVPQRLRAGGVHRAAAPVGEHHRPLRRGERELDPPRGVPL 3867 V R R G HR A + HR R PP PL Sbjct: 215 HPRAVRPRRRTGRRHRRRASLRPRHRRHRS-----TPPMNTPL 252 Score = 36.2 bits (82), Expect = 0.28 Identities = 36/109 (33%), Positives = 41/109 (37%), Gaps = 4/109 (3%) Frame = +3 Query: 28383 APAPGSRPAAQPTXXXXXXXXXXXXXXLPVRETRPFTRAQ--GSGTRPRDPIV*RPRTRP 28556 APA + P P L R R TRA G G R R P+ R RTR Sbjct: 103 APAAPAAPEYAPALRPRAPECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTRR 162 Query: 28557 FQGCN--RGSNPRGVTGFFANRPARPWTGRSCLELAPRPGEMRRLRRSP 28697 + + R PR G R AR R + P PG RR RR P Sbjct: 163 RRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRP 211 >ref|NP_817395.1|gp57 Length = 287 Score = 35.8 bits (81), Expect = 0.36 Identities = 30/101 (29%), Positives = 39/101 (38%) Frame = -1 Query: 32670 SAGGTGTRPSGWPRCGPPGARAAIRPRCGSARASSTCWSAAASRSRRTWPSSXXXXXXXX 32491 SA G+ + W G +A R GSA A S WSAA S + W ++ Sbjct: 147 SAAGSAAWSAAWSAAG-----SAARSAAGSA-AGSAAWSAAGSAA---WSAA-------- 189 Query: 32490 XXXXXXXXXXRWSCGRSTSGRSASRWSPGWRPARWSPWSGA 32368 WS S +G +A WS W A + WS A Sbjct: 190 -----------WSAAESAAGSAA--WSAAWSAAGSAAWSAA 217 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 113,597,381 Number of Sequences: 14420 Number of extensions: 2003535 Number of successful extensions: 8662 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 4534 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8623 length of database: 3,019,461 effective HSP length: 115 effective length of database: 1,361,161 effective search space used: 19774947008 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig61 (50,039 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_612844.1|Gp15 protein 110 2e-23 ref|NP_695158.1|minor capsid protein 92 6e-18 ref|NP_943827.1|gp49 89 4e-17 ref|NP_108727.1|minor structural protein 3 80 2e-14 ref|NP_663686.1|structural protein 79 3e-14 ref|NP_112710.1|ORF47 79 4e-14 ref|NP_076626.1|endopeptidase 79 4e-14 ref|NP_803396.1|tail length tape measure protein 69 6e-11 ref|NP_058454.1|orf 16 69 6e-11 ref|NP_061640.1|phi PVL ORF 15 and 16 homologue 68 7e-11 ref|YP_195243.1|hypothetical protein 64 1e-09 ref|NP_046584.1|putative transglycosylase 64 1e-09 ref|NP_075512.2|hypothetical protein 60 3e-08 ref|NP_777327.1|hypothetical protein 60 3e-08 ref|NP_835564.1|hypothetical protein 59 6e-08 ref|NP_803346.1|tail fiber protein 59 6e-08 ref|NP_958615.1|77ORF001 59 6e-08 ref|NP_932394.1|DNA polymerase accessory protein 56 3e-07 ref|NP_046874.1|putative DNA primase 45 7e-04 ref|NP_899626.1|conserved domain protein 44 0.002 ref|NP_064745.1|gp7 43 0.003 ref|NP_061549.1|Orf53 42 0.006 ref|YP_195157.1|sliding clamp loader gp44 42 0.008 ref|NP_690647.1|morphogenesis protein 42 0.008 ref|NP_891600.1|Gp44 41 0.010 ref|NP_039722.1|predicted 14.5Kd protein 40 0.022 ref|NP_817647.1|gp58 40 0.029 ref|NP_049665.1|gp44 clamp loader subunit, DNA polymerase access... 37 0.24 ref|NP_073696.1|morphogenesis protein 36 0.32 ref|NP_438139.1|hypothetical protein 36 0.41 ref|NP_795575.1|hypothetical protein 36 0.41 ref|NP_958209.1|gene 33 protein 36 0.41 ref|NP_705683.1|gp59 36 0.41 ref|NP_690779.1|ORF46 36 0.41 ref|NP_943898.1|gp44 clamp loader subunit 36 0.41 ref|NP_040731.1|morphogenesis protein A 36 0.41 >ref|NP_612844.1|Gp15 protein Length = 983 Score = 110 bits (274), Expect = 2e-23 Identities = 59/117 (50%), Positives = 73/117 (62%), Gaps = 1/117 (0%) Frame = -1 Query: 20792 PARGWVTSDFGTRIDPYTAERKMHQGLDIATPHGQPIYTPSDGTVVFSGT-EGAYGKVLV 20616 P G +T+ F T Y + K H G+D TP G P+ DG V+ +YGK L Sbjct: 860 PTTGTITATFPT----YPSGGK-HDGIDFGTPIGTPVRVSKDGVVIKRRELTTSYGKYLF 914 Query: 20615 LDHGYGVKTRYAHLSEIFVRLGDRVKRGDKVAAVGNTGRSTGPHLHYEVRVNGIPEN 20445 +DHG G+ T YAH SE+ V GDRVKRG +A GNTG STGPHLH+E+RVNGIP+N Sbjct: 915 VDHGGGLITIYAHNSELLVNEGDRVKRGQIIAKTGNTGNSTGPHLHWELRVNGIPQN 971 Score = 107 bits (268), Expect = 9e-23 Identities = 57/116 (49%), Positives = 72/116 (62%), Gaps = 4/116 (3%) Frame = +1 Query: 1345 GW--PLKGVLYGRYGVR-AGQRHDGIDIAAPEGTPVLAAADGSVIYAGE-QAGYGAVVIL 1512 GW P G + + +G +HDGID P GTPV + DG VI E YG + + Sbjct: 856 GWVIPTTGTITATFPTYPSGGKHDGIDFGTPIGTPVRVSKDGVVIKRRELTTSYGKYLFV 915 Query: 1513 RHDGGLVTLYAHNSEVLVKEGARVGRGQPIARVGQTGRTTGPHLHFEVREGTRPRN 1680 H GGL+T+YAHNSE+LV EG RV RGQ IA+ G TG +TGPHLH+E+R P+N Sbjct: 916 DHGGGLITIYAHNSELLVNEGDRVKRGQIIAKTGNTGNSTGPHLHWELRVNGIPQN 971 >ref|NP_695158.1|minor capsid protein Length = 1608 Score = 91.7 bits (226), Expect = 6e-18 Identities = 48/108 (44%), Positives = 67/108 (62%), Gaps = 3/108 (2%) Frame = +1 Query: 1378 YGVRAGQRHDGIDIAAPEGTPVLAAADGSVIYAGEQAGYGAVVILRHDGGLV-TLYAHNS 1554 YG RAG H GID AAP GTP+ A G+V+ AG +G+G V+++ G V T+Y H Sbjct: 1249 YGPRAGGFHKGIDFAAPLGTPIPAQYGGTVVQAGPASGFGNWVVIKPSGASVDTIYGHMK 1308 Query: 1555 EVLVKEGARVGRGQPIARVGQTGRTTGPHLHFEVREGT--RPRNPLLF 1692 + VK G V GQ IA VG G+++GPH+H+E+R G + NP+ + Sbjct: 1309 RMKVKTGQHVKAGQIIAWVGSEGQSSGPHVHYELRAGLGGKSYNPMTY 1356 Score = 75.5 bits (184), Expect = 5e-13 Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 3/100 (3%) Frame = -1 Query: 20723 HQGLDIATPHGQPIYTPSDGTVVFSGTEGAYGK-VLVLDHGYGVKTRYAHLSEIFVRLGD 20547 H+G+D A P G PI GTVV +G +G V++ G V T Y H+ + V+ G Sbjct: 1257 HKGIDFAAPLGTPIPAQYGGTVVQAGPASGFGNWVVIKPSGASVDTIYGHMKRMKVKTGQ 1316 Query: 20546 RVKRGDKVAAVGNTGRSTGPHLHYEVR--VNGIPENPRKF 20433 VK G +A VG+ G+S+GPH+HYE+R + G NP + Sbjct: 1317 HVKAGQIIAWVGSEGQSSGPHVHYELRAGLGGKSYNPMTY 1356 >ref|NP_943827.1|gp49 Length = 429 Score = 89.0 bits (219), Expect = 4e-17 Identities = 45/99 (45%), Positives = 62/99 (62%), Gaps = 6/99 (6%) Frame = +1 Query: 1378 YGVRAGQRHDGIDIAAPEGTPVLAAADGSVIYAGEQAGYGAVVILRH---DGGLVTLYAH 1548 +G R G +H G+D AA +GTP+ AA G+V Y G G+G +++ H DGG T+Y H Sbjct: 12 FGPRWGSQHRGLDFAAKDGTPIYAAQGGTVAYIGRADGFGQWIVIDHPAADGGGTTVYGH 71 Query: 1549 NSEVL---VKEGARVGRGQPIARVGQTGRTTGPHLHFEV 1656 + +++G RV GQ IA VG G++TGPHLHFEV Sbjct: 72 MWDAFATGLRQGQRVEAGQLIAYVGTNGQSTGPHLHFEV 110 Score = 77.0 bits (188), Expect = 2e-13 Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 6/91 (6%) Frame = -1 Query: 20723 HQGLDIATPHGQPIYTPSDGTVVFSGTEGAYGKVLVLDHGY---GVKTRYAHLSEIF--- 20562 H+GLD A G PIY GTV + G +G+ +V+DH G T Y H+ + F Sbjct: 20 HRGLDFAAKDGTPIYAAQGGTVAYIGRADGFGQWIVIDHPAADGGGTTVYGHMWDAFATG 79 Query: 20561 VRLGDRVKRGDKVAAVGNTGRSTGPHLHYEV 20469 +R G RV+ G +A VG G+STGPHLH+EV Sbjct: 80 LRQGQRVEAGQLIAYVGTNGQSTGPHLHFEV 110 >ref|NP_108727.1|minor structural protein 3 Length = 906 Score = 79.7 bits (195), Expect = 2e-14 Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 9/125 (7%) Frame = -1 Query: 20777 VTSDFGTRIDPYTAERKMHQGLDIATPHGQ-PIYTPSDGTVVFSGTE--GAYGKVLVLDH 20607 VTS+ G R P T ++ H +D+ + PI +DG VV +G+ YG V+ H Sbjct: 780 VTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASNDGQVVQAGSNYYNWYGNYTVIKH 839 Query: 20606 GYGVKTRYAHLSEIFVRLGDRVKRGDKVAAVGNTGRSTGPHLHYEVRVNGIP------EN 20445 G+ T YAH S I V +G VK+G ++ +G TG TGPHLH++ P +N Sbjct: 840 ADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMDQYWPSSHAHFKN 899 Query: 20444 PRKFI 20430 PR +I Sbjct: 900 PRDYI 904 Score = 72.4 bits (176), Expect = 4e-12 Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 6/112 (5%) Frame = +1 Query: 1336 SRLGW---PLKGVLYGRYGVRAGQRHDGIDIA-APEGTPVLAAADGSVIYAGEQA--GYG 1497 S +GW P+ G A + H+ +D+ TP+LA+ DG V+ AG YG Sbjct: 782 SEMGWRTSPITG---------AQEFHNAMDLVNGNPTTPILASNDGQVVQAGSNYYNWYG 832 Query: 1498 AVVILRHDGGLVTLYAHNSEVLVKEGARVGRGQPIARVGQTGRTTGPHLHFE 1653 +++H GL T YAH S + V G V +GQ I +G TG TGPHLHF+ Sbjct: 833 NYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQ 884 >ref|NP_663686.1|structural protein Length = 908 Score = 79.3 bits (194), Expect = 3e-14 Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 9/125 (7%) Frame = -1 Query: 20777 VTSDFGTRIDPYTAERKMHQGLDIATPHGQ-PIYTPSDGTVVFSGTE--GAYGKVLVLDH 20607 VTS+ G R P T ++ H +D+ + PI +DG VV +G+ YG V+ H Sbjct: 782 VTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASNDGQVVQAGSNYYDWYGNYTVIKH 841 Query: 20606 GYGVKTRYAHLSEIFVRLGDRVKRGDKVAAVGNTGRSTGPHLHYEVRVNGIP------EN 20445 G+ T YAH S I V +G VK+G ++ +G TG TGPHLH++ P +N Sbjct: 842 ADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMDQYWPSSSAHFKN 901 Query: 20444 PRKFI 20430 PR +I Sbjct: 902 PRDYI 906 Score = 72.8 bits (177), Expect = 3e-12 Identities = 45/125 (36%), Positives = 63/125 (50%), Gaps = 6/125 (4%) Frame = +1 Query: 1336 SRLGW---PLKGVLYGRYGVRAGQRHDGIDIA-APEGTPVLAAADGSVIYAGEQA--GYG 1497 S +GW P+ G A + H+ +D+ TP+LA+ DG V+ AG YG Sbjct: 784 SEMGWRTSPITG---------AQEFHNAMDLVNGNPTTPILASNDGQVVQAGSNYYDWYG 834 Query: 1498 AVVILRHDGGLVTLYAHNSEVLVKEGARVGRGQPIARVGQTGRTTGPHLHFEVREGTRPR 1677 +++H GL T YAH S + V G V +GQ I +G TG TGPHLHF+ + P Sbjct: 835 NYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMDQYWPS 894 Query: 1678 NPLLF 1692 + F Sbjct: 895 SSAHF 899 >ref|NP_112710.1|ORF47 Length = 918 Score = 79.0 bits (193), Expect = 4e-14 Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 9/125 (7%) Frame = -1 Query: 20777 VTSDFGTRIDPYTAERKMHQGLDIATPHGQ-PIYTPSDGTVVFSGTE--GAYGKVLVLDH 20607 VTS+ G R P T ++ H +D+ + PI DG VV +G+ YG V+ H Sbjct: 792 VTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASGDGQVVQAGSNYYDWYGNYTVIKH 851 Query: 20606 GYGVKTRYAHLSEIFVRLGDRVKRGDKVAAVGNTGRSTGPHLHYEVRVNGIP------EN 20445 G+ T YAH S I V +G VK+G ++ +G TG TGPHLH++ P +N Sbjct: 852 ADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMDQYWPSSSAHFKN 911 Query: 20444 PRKFI 20430 PR +I Sbjct: 912 PRDYI 916 Score = 73.6 bits (179), Expect = 2e-12 Identities = 45/125 (36%), Positives = 63/125 (50%), Gaps = 6/125 (4%) Frame = +1 Query: 1336 SRLGW---PLKGVLYGRYGVRAGQRHDGIDIA-APEGTPVLAAADGSVIYAGEQA--GYG 1497 S +GW P+ G A + H+ +D+ TP+LA+ DG V+ AG YG Sbjct: 794 SEMGWRTSPITG---------AQEFHNAMDLVNGNPTTPILASGDGQVVQAGSNYYDWYG 844 Query: 1498 AVVILRHDGGLVTLYAHNSEVLVKEGARVGRGQPIARVGQTGRTTGPHLHFEVREGTRPR 1677 +++H GL T YAH S + V G V +GQ I +G TG TGPHLHF+ + P Sbjct: 845 NYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMDQYWPS 904 Query: 1678 NPLLF 1692 + F Sbjct: 905 SSAHF 909 >ref|NP_076626.1|endopeptidase Length = 894 Score = 79.0 bits (193), Expect = 4e-14 Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 9/125 (7%) Frame = -1 Query: 20777 VTSDFGTRIDPYTAERKMHQGLDIATPHGQ-PIYTPSDGTVVFSGTE--GAYGKVLVLDH 20607 VTS+ G R P T ++ H +D+ + PI DG VV +G+ YG V+ H Sbjct: 768 VTSEMGWRTSPITGAQEFHNAMDLVNGNPTTPILASGDGQVVQAGSNYYDWYGNYTVIKH 827 Query: 20606 GYGVKTRYAHLSEIFVRLGDRVKRGDKVAAVGNTGRSTGPHLHYEVRVNGIP------EN 20445 G+ T YAH S I V +G VK+G ++ +G TG TGPHLH++ P +N Sbjct: 828 ADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMDQYWPSSSAHFKN 887 Query: 20444 PRKFI 20430 PR +I Sbjct: 888 PRDYI 892 Score = 73.6 bits (179), Expect = 2e-12 Identities = 45/125 (36%), Positives = 63/125 (50%), Gaps = 6/125 (4%) Frame = +1 Query: 1336 SRLGW---PLKGVLYGRYGVRAGQRHDGIDIA-APEGTPVLAAADGSVIYAGEQA--GYG 1497 S +GW P+ G A + H+ +D+ TP+LA+ DG V+ AG YG Sbjct: 770 SEMGWRTSPITG---------AQEFHNAMDLVNGNPTTPILASGDGQVVQAGSNYYDWYG 820 Query: 1498 AVVILRHDGGLVTLYAHNSEVLVKEGARVGRGQPIARVGQTGRTTGPHLHFEVREGTRPR 1677 +++H GL T YAH S + V G V +GQ I +G TG TGPHLHF+ + P Sbjct: 821 NYTVIKHADGLYTGYAHQSRIDVSVGQNVKKGQQIGLMGATGPVTGPHLHFQFMDQYWPS 880 Query: 1678 NPLLF 1692 + F Sbjct: 881 SSAHF 885 >ref|NP_803396.1|tail length tape measure protein Length = 1550 Score = 68.6 bits (166), Expect = 6e-11 Identities = 45/108 (41%), Positives = 57/108 (52%), Gaps = 7/108 (6%) Frame = -1 Query: 20744 YTAE--RKMHQGLDIATPHGQPIYTPSDGTV-----VFSGTEGAYGKVLVLDHGYGVKTR 20586 YT E R H+GLD IY P T+ V G YGK + + G ++ Sbjct: 1180 YTRETGRPFHEGLDF-----DYIYEPVPSTINGRAQVMPVHNGGYGKWVKIVKG-ALEVI 1233 Query: 20585 YAHLSEIFVRLGDRVKRGDKVAAVGNTGRSTGPHLHYEVRVNGIPENP 20442 YAHLS+ V+ G +V+ G V GNTG STGPHLHYE+R NG +P Sbjct: 1234 YAHLSKYKVKTGQQVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDP 1281 Score = 59.3 bits (142), Expect = 3e-08 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 3/109 (2%) Frame = +1 Query: 1402 HDGID---IAAPEGTPVLAAADGSVIYAGEQAGYGAVVILRHDGGLVTLYAHNSEVLVKE 1572 H+G+D I P + + A ++ G GYG V + G L +YAH S+ VK Sbjct: 1189 HEGLDFDYIYEPVPSTINGRAQVMPVHNG---GYGKWVKIVK-GALEVIYAHLSKYKVKT 1244 Query: 1573 GARVGRGQPIARVGQTGRTTGPHLHFEVREGTRPRNPLLFLP*SRRGSR 1719 G +V GQ + G TG +TGPHLH+E+R R R+PL +L + G + Sbjct: 1245 GQQVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPLPWLRKNNGGGK 1293 >ref|NP_058454.1|orf 16 Length = 539 Score = 68.6 bits (166), Expect = 6e-11 Identities = 45/108 (41%), Positives = 57/108 (52%), Gaps = 7/108 (6%) Frame = -1 Query: 20744 YTAE--RKMHQGLDIATPHGQPIYTPSDGTV-----VFSGTEGAYGKVLVLDHGYGVKTR 20586 YT E R H+GLD IY P T+ V G YGK + + G ++ Sbjct: 405 YTRETGRPFHEGLDF-----DYIYEPVPSTINGRAQVMPFHNGGYGKWVKIVKG-ALEVI 458 Query: 20585 YAHLSEIFVRLGDRVKRGDKVAAVGNTGRSTGPHLHYEVRVNGIPENP 20442 YAHLS+ V+ G +V+ G V GNTG STGPHLHYE+R NG +P Sbjct: 459 YAHLSKYKVKTGQQVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDP 506 Score = 57.8 bits (138), Expect = 1e-07 Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 3/101 (2%) Frame = +1 Query: 1402 HDGID---IAAPEGTPVLAAADGSVIYAGEQAGYGAVVILRHDGGLVTLYAHNSEVLVKE 1572 H+G+D I P + + A + G GYG V + G L +YAH S+ VK Sbjct: 414 HEGLDFDYIYEPVPSTINGRAQVMPFHNG---GYGKWVKIVK-GALEVIYAHLSKYKVKT 469 Query: 1573 GARVGRGQPIARVGQTGRTTGPHLHFEVREGTRPRNPLLFL 1695 G +V GQ + G TG +TGPHLH+E+R R R+PL +L Sbjct: 470 GQQVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPLPWL 510 >ref|NP_061640.1|phi PVL ORF 15 and 16 homologue Length = 1313 Score = 68.2 bits (165), Expect = 7e-11 Identities = 45/108 (41%), Positives = 57/108 (52%), Gaps = 7/108 (6%) Frame = -1 Query: 20744 YTAE--RKMHQGLDIATPHGQPIYTPSDGTV-----VFSGTEGAYGKVLVLDHGYGVKTR 20586 YT E R H+GLD IY P T+ V G YGK + + G ++ Sbjct: 1179 YTRETGRPFHEGLDF-----DYIYEPVPSTINGRAQVMPFHNGGYGKWVKIVKG-ALEVI 1232 Query: 20585 YAHLSEIFVRLGDRVKRGDKVAAVGNTGRSTGPHLHYEVRVNGIPENP 20442 YAHLS+ V+ G +V+ G V GNTG STGPHLHYE+R NG +P Sbjct: 1233 YAHLSKYKVKTGHQVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDP 1280 Score = 57.4 bits (137), Expect = 1e-07 Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 3/101 (2%) Frame = +1 Query: 1402 HDGID---IAAPEGTPVLAAADGSVIYAGEQAGYGAVVILRHDGGLVTLYAHNSEVLVKE 1572 H+G+D I P + + A + G GYG V + G L +YAH S+ VK Sbjct: 1188 HEGLDFDYIYEPVPSTINGRAQVMPFHNG---GYGKWVKIVK-GALEVIYAHLSKYKVKT 1243 Query: 1573 GARVGRGQPIARVGQTGRTTGPHLHFEVREGTRPRNPLLFL 1695 G +V GQ + G TG +TGPHLH+E+R R R+PL +L Sbjct: 1244 GHQVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPLPWL 1284 >ref|YP_195243.1|hypothetical protein Length = 749 Score = 64.3 bits (155), Expect = 1e-09 Identities = 40/110 (36%), Positives = 53/110 (48%), Gaps = 8/110 (7%) Frame = -1 Query: 20777 VTSDFGTRIDPYTAERKMHQGLDIATPHGQPIYTPSDGTV--VFSGTEGAYGKVLVLDHG 20604 +TS FG R P H G+D TP G + G V + G G+V ++ H Sbjct: 543 ITSRFGRRASPGGVGSTNHMGIDYGTPQGTKLAIKKPGRVQKIVVPAPGNMGEVHIV-HD 601 Query: 20603 YGVKTRYAHLSEIFVRLGDRVKRGDKVAAVG------NTGRSTGPHLHYE 20472 G +TRY HLS++ VR G +V G + G G STGPHLH+E Sbjct: 602 DGTETRYLHLSKVAVRQGAQVVAGTLLGETGGEPGTPGAGPSTGPHLHFE 651 Score = 55.5 bits (132), Expect = 5e-07 Identities = 40/107 (37%), Positives = 50/107 (46%), Gaps = 14/107 (13%) Frame = +1 Query: 1375 RYGVRAGQ------RHDGIDIAAPEGTPVLAAADGSV--IYAGEQAGYGAVVILRHDGGL 1530 R+G RA H GID P+GT + G V I G V I+ HD G Sbjct: 546 RFGRRASPGGVGSTNHMGIDYGTPQGTKLAIKKPGRVQKIVVPAPGNMGEVHIV-HDDGT 604 Query: 1531 VTLYAHNSEVLVKEGARVGRGQPIARVG------QTGRTTGPHLHFE 1653 T Y H S+V V++GA+V G + G G +TGPHLHFE Sbjct: 605 ETRYLHLSKVAVRQGAQVVAGTLLGETGGEPGTPGAGPSTGPHLHFE 651 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 63.9 bits (154), Expect = 1e-09 Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Frame = +1 Query: 1402 HDGIDIAAPEGTPVLAAADGSVIYAGEQAGYGAVVILRHDGGLVTLYAHNSEV-LVKEGA 1578 H G D AA GT + + G V AG G V+++ D G V Y H VK G Sbjct: 1580 HKGTDFAAKAGTAIKSLQSGKVQIAGYSKTAGNWVVIKQDDGTVAKYMHMLNTPSVKAGQ 1639 Query: 1579 RVGRGQPIARVGQTGRTTGPHLHFEVREGTRPRNP 1683 V GQ I +VG TG +TG HLH ++ + + +P Sbjct: 1640 SVKAGQTIGKVGSTGNSTGNHLHLQIEQNGKTIDP 1674 Score = 62.0 bits (149), Expect = 5e-09 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 1/99 (1%) Frame = -1 Query: 20723 HQGLDIATPHGQPIYTPSDGTVVFSGTEGAYGKVLVLDHGYGVKTRYAH-LSEIFVRLGD 20547 H+G D A G I + G V +G G +V+ G +Y H L+ V+ G Sbjct: 1580 HKGTDFAAKAGTAIKSLQSGKVQIAGYSKTAGNWVVIKQDDGTVAKYMHMLNTPSVKAGQ 1639 Query: 20546 RVKRGDKVAAVGNTGRSTGPHLHYEVRVNGIPENPRKFI 20430 VK G + VG+TG STG HLH ++ NG +P K++ Sbjct: 1640 SVKAGQTIGKVGSTGNSTGNHLHLQIEQNGKTIDPEKYM 1678 >ref|NP_075512.2|hypothetical protein Length = 2067 Score = 59.7 bits (143), Expect = 3e-08 Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 4/108 (3%) Frame = +1 Query: 1369 YGRY--GVRA-GQRHDGIDIAAPEGTPVLAAADGSVIYAGEQAGYGAVVILRHDGGLVTL 1539 +GRY G+ G RH GID P GT V A G G G + ++ Sbjct: 1694 FGRYTGGLNFNGGRHYGIDFGMPSGTNVYAVKGGIADKVWTDYGGGNSIQIKTGANEWNW 1753 Query: 1540 YAHNSEVLVKEGARVGRGQPIARVGQTGR-TTGPHLHFEVREGTRPRN 1680 Y H S+ L ++G R+ GQ I + G TG G HLHF++ +G+ P N Sbjct: 1754 YMHLSKQLARQGQRIKAGQLIGKSGATGNFVRGAHLHFQLMQGSHPGN 1801 Score = 51.6 bits (122), Expect = 7e-06 Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 6/114 (5%) Frame = -1 Query: 20723 HQGLDIATPHGQPIYTPSDGTVVFSGTEGAYGKVLVLDHGYGVKTRYAHLSEIFVRLGDR 20544 H G+D P G +Y G T+ G + + G Y HLS+ R G R Sbjct: 1708 HYGIDFGMPSGTNVYAVKGGIADKVWTDYGGGNSIQIKTGANEWNWYMHLSKQLARQGQR 1767 Query: 20543 VKRGDKVAAVGNTGRST-GPHLHYEVRVNGIPEN-----PRKFILE*SWPGVRS 20400 +K G + G TG G HLH+++ P N P K++ GVRS Sbjct: 1768 IKAGQLIGKSGATGNFVRGAHLHFQLMQGSHPGNDTAKDPEKWLKSLKGSGVRS 1821 >ref|NP_777327.1|hypothetical protein Length = 196 Score = 59.7 bits (143), Expect = 3e-08 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 7/98 (7%) Frame = -1 Query: 20723 HQGLDIATPHG------QPIYTPSDGTVVFSGTEGAYGKVLVLDH-GYGVKTRYAHLSEI 20565 H G+D+ P G QP++ +DG VV +G +G ++VL H GV TRY HL +I Sbjct: 50 HTGVDLNGPGGGDTDCGQPVHAMTDGRVVIAGRFPVWGGMVVLWHPSAGVWTRYGHLRDI 109 Query: 20564 FVRLGDRVKRGDKVAAVGNTGRSTGPHLHYEVRVNGIP 20451 V GD V G ++ +G HLH++V + P Sbjct: 110 LVHPGDVVVAGQQIGTIGKMTTGGYCHLHFDVFIRVPP 147 Score = 58.5 bits (140), Expect = 6e-08 Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 11/130 (8%) Frame = +1 Query: 1372 GRYGVRAGQRHDGIDIAAPEG------TPVLAAADGSVIYAGEQAGYGAVVILRH-DGGL 1530 G + V G H G+D+ P G PV A DG V+ AG +G +V+L H G+ Sbjct: 40 GSWLVPPGYWHTGVDLNGPGGGDTDCGQPVHAMTDGRVVIAGRFPVWGGMVVLWHPSAGV 99 Query: 1531 VTLYAHNSEVLVKEGARVGRGQPIARVGQTGRTTGP--HLHFEV--REGTRPRNPLLFLP 1698 T Y H ++LV G V GQ I +G+ TTG HLHF+V R LF P Sbjct: 100 WTRYGHLRDILVHPGDVVVAGQQIGTIGK--MTTGGYCHLHFDVFIRVPPASEGGWLFFP 157 Query: 1699 *SRRGSRGKV 1728 +R KV Sbjct: 158 RGGEEARQKV 167 >ref|NP_835564.1|hypothetical protein Length = 1509 Score = 58.5 bits (140), Expect = 6e-08 Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 5/114 (4%) Frame = -1 Query: 20756 RIDPYTAE--RKMHQGLDIATPHGQPIYTPSDGTVV-FSGTEGAYGKVLVLDHGYGVKTR 20586 R YTA R H+G+D + Q + TP G + G YG + + G + Sbjct: 1131 RTAAYTAATGRPFHEGVDFPFVY-QEVRTPMGGRLTRMPFMSGGYGNYVKITSGV-IDML 1188 Query: 20585 YAHLSEIFVR--LGDRVKRGDKVAAVGNTGRSTGPHLHYEVRVNGIPENPRKFI 20430 +AHL G VK GD V GNTG STGPHLH+E+R NG +P ++ Sbjct: 1189 FAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPHLHFEMRRNGRHFDPEPYL 1242 Score = 42.7 bits (99), Expect = 0.003 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Frame = +1 Query: 1489 GYGAVVILRHDGGLVTLYAH--NSEVLVKEGARVGRGQPIARVGQTGRTTGPHLHFEVRE 1662 GYG V + G + L+AH N G V G + G TG +TGPHLHFE+R Sbjct: 1173 GYGNYVKIT-SGVIDMLFAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPHLHFEMRR 1231 Query: 1663 GTRPRNPLLFLP*SRRGSR 1719 R +P +L +++ R Sbjct: 1232 NGRHFDPEPYLRNAKKKGR 1250 >ref|NP_803346.1|tail fiber protein Length = 2066 Score = 58.5 bits (140), Expect = 6e-08 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Frame = +1 Query: 1393 GQRHDGIDIAAPEGTPVLAAADGSVIYAGEQAGYGAVVILRHDGGLVTLYAHNSEVLVKE 1572 G RH GID P GT + A G G G + ++ Y H S+ L ++ Sbjct: 1704 GGRHYGIDFGMPTGTNIYAVKGGIADKVWTDYGGGNSIQIKTGANEWNWYMHLSKQLARQ 1763 Query: 1573 GARVGRGQPIARVGQTGR-TTGPHLHFEVREGTRPRN 1680 G R+ GQ I + G TG G HLHF++ +G+ P N Sbjct: 1764 GQRIKAGQLIGKSGATGNFVRGAHLHFQLMQGSHPGN 1800 Score = 51.6 bits (122), Expect = 7e-06 Identities = 35/114 (30%), Positives = 47/114 (41%), Gaps = 6/114 (5%) Frame = -1 Query: 20723 HQGLDIATPHGQPIYTPSDGTVVFSGTEGAYGKVLVLDHGYGVKTRYAHLSEIFVRLGDR 20544 H G+D P G IY G T+ G + + G Y HLS+ R G R Sbjct: 1707 HYGIDFGMPTGTNIYAVKGGIADKVWTDYGGGNSIQIKTGANEWNWYMHLSKQLARQGQR 1766 Query: 20543 VKRGDKVAAVGNTGRST-GPHLHYEVRVNGIPEN-----PRKFILE*SWPGVRS 20400 +K G + G TG G HLH+++ P N P K++ GVRS Sbjct: 1767 IKAGQLIGKSGATGNFVRGAHLHFQLMQGSHPGNDTAKDPEKWLKSLKGSGVRS 1820 >ref|NP_958615.1|77ORF001 Length = 1509 Score = 58.5 bits (140), Expect = 6e-08 Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 5/114 (4%) Frame = -1 Query: 20756 RIDPYTAE--RKMHQGLDIATPHGQPIYTPSDGTVV-FSGTEGAYGKVLVLDHGYGVKTR 20586 R YTA R H+G+D + Q + TP G + G YG + + G + Sbjct: 1131 RTAAYTAATGRPFHEGVDFPFVY-QEVRTPMGGRLTRMPFMSGGYGNYVKITSGV-IDML 1188 Query: 20585 YAHLSEIFVR--LGDRVKRGDKVAAVGNTGRSTGPHLHYEVRVNGIPENPRKFI 20430 +AHL G VK GD V GNTG STGPHLH+E+R NG +P ++ Sbjct: 1189 FAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPHLHFEMRRNGRHFDPEPYL 1242 Score = 42.7 bits (99), Expect = 0.003 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Frame = +1 Query: 1489 GYGAVVILRHDGGLVTLYAH--NSEVLVKEGARVGRGQPIARVGQTGRTTGPHLHFEVRE 1662 GYG V + G + L+AH N G V G + G TG +TGPHLHFE+R Sbjct: 1173 GYGNYVKIT-SGVIDMLFAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPHLHFEMRR 1231 Query: 1663 GTRPRNPLLFLP*SRRGSR 1719 R +P +L +++ R Sbjct: 1232 NGRHFDPEPYLRNAKKKGR 1250 >ref|NP_932394.1|DNA polymerase accessory protein Length = 319 Score = 56.2 bits (134), Expect = 3e-07 Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 5/206 (2%) Frame = +3 Query: 25275 RMRPRRLEDFAGQEHVLGPGTALRRSIEADQVPSLILWGP-PGTGKTTLARIVAQRTGAD 25451 + RP +++ EH + +++ ++P++IL P PGTGKTT+AR + A+ Sbjct: 14 KYRPGNIDECILPEH---DKKIFKAIVKSGRIPNIILHSPSPGTGKTTVARALVAEIDAE 70 Query: 25452 FVPFSAVLGGVKEIREIVXXXXXXXXXXXXXTILFVDEIHRFTRAQQDAFL-PHVEDGTI 25628 F+ + + +R+++ ++ VDE R A L +E + Sbjct: 71 FLFVNGADAKIDFVRDVMTPFASSKTFCKGGKVIIVDEFDRAGLADSQRHLRSFMEAHSK 130 Query: 25629 TLIGATTENPSFEVNAALLSRCRVATLRALTEDEVAALLDRATAAPEGLAGAVALAPEAR 25808 T N + AL SRCRV + + ++ + E + A + E R Sbjct: 131 NCTFIITANDLGGIIPALQSRCRVIQFGKADQSDKINMMKQMIVRAEEICAAENIEVEDR 190 Query: 25809 DTIARL---SYGDARKALNALEVSAA 25877 IA L ++ D RK +N ++ A+ Sbjct: 191 KVIAALVKKNFPDFRKTVNEMDFYAS 216 >ref|NP_046874.1|putative DNA primase Length = 129 Score = 45.1 bits (105), Expect = 7e-04 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = -1 Query: 40601 CIFHGERTPSFHVYPEDKHFKCYGCGAYGDVFTFLQRLEGKEFPEVVR-ALAQEVGVEIP 40425 C FHG+ TPS V + + F C CG GDV + ++ E F E VR A VG IP Sbjct: 31 CPFHGDETPSAAVSYDLQGFNCLACGVRGDVISIIRHEEEVSFAEAVRIAEGLSVGGNIP 90 >ref|NP_899626.1|conserved domain protein Length = 137 Score = 43.9 bits (102), Expect = 0.002 Identities = 34/121 (28%), Positives = 62/121 (51%) Frame = -1 Query: 41225 ERLDADLKTAMREKDTLKLSVVRMLKSAVKYREIELMKPLDDAGVQGVIASEIKRRRDSV 41046 E + A A ++++ SV+ ++ E++ + DD VI+S I ++ Sbjct: 4 ETIKATRLQARKDRNNAVASVLGVIMG-----ELDRRQKHDDESCIKVISSAIDNNNLAL 58 Query: 41045 EQYRAGNRQDLVDKEEAEIRILQAWLPAQLTEDELRAKVDAAVQATGAQGPKDMGAVMKA 40866 E + G+ D+++ E A +L++ LPA++++ EL V V TGA +DMG +M A Sbjct: 59 E-HAQGDHVDILNAENA---VLESLLPAKISDSELDTFVSNFVLETGADSMRDMGKLMGA 114 Query: 40865 L 40863 L Sbjct: 115 L 115 >ref|NP_064745.1|gp7 Length = 540 Score = 42.7 bits (99), Expect = 0.003 Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 8/122 (6%) Frame = -1 Query: 5075 SSTMAVIPLTNATVSSGGVPPNARARATSCTRPRTPGQ--------ASSSPDGQSTSRTP 4920 S+T A TNA S +A A ATS T T A+ S +TS T Sbjct: 111 SATAAATSATNAGASETAASASATASATSATNSATSASQAATSASAAAVSEGNAATSETN 170 Query: 4919 PRSQARCSARYANSAPWRWP*NSVTRRNASRCASTCCTTARIGAMPEPAANRSTSRPAAS 4740 + A ++ A++A + SV+ NA+ AS T+A A + AA S + AAS Sbjct: 171 AANSATSASGSASTATTQASAASVSATNAATSASNAATSATNAAASQAAAATSETNAAAS 230 Query: 4739 ST 4734 + Sbjct: 231 ES 232 >ref|NP_061549.1|Orf53 Length = 354 Score = 42.0 bits (97), Expect = 0.006 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 2/136 (1%) Frame = -3 Query: 36258 SRENGRTALSSLREKLKTLEELQQIDLDSNEVRAELETLPAKRAE--IDQRVAEARRAYD 36085 +R G+ AL++LRE L E+ + + +RAE K E I + AEA R Sbjct: 166 ARTKGK-ALAALREALVAREKYEAEQAELERLRAEAAAREQKEREERIAREAAEAERLAA 224 Query: 36084 EEKARVEGNERERRQLESLLAMERDKVKKWEGRLGEIRTPREYAALSREIDIAKKTNDGQ 35905 E +A+ E + RR+ E+ A ER ++ E RL + RE + + A++ + Sbjct: 225 ERRAQEERDATARREAEAKAAAER---RELELRLAAEKAEREKLEAQQRAEQAERDAQRR 281 Query: 35904 SEQIKALVASAGELQK 35857 +E+ A+A E Q+ Sbjct: 282 AEE-----ATAAERQR 292 >ref|YP_195157.1|sliding clamp loader gp44 Length = 315 Score = 41.6 bits (96), Expect = 0.008 Identities = 63/294 (21%), Positives = 119/294 (40%), Gaps = 15/294 (5%) Frame = +3 Query: 25272 ERMRPRRLEDFAGQEHVLGPGTALRRSIEADQVPSLILWGPPGTGKTTLARIVAQRTGAD 25451 E+ RP+ ++D + + + +E ++P+L+L G G GKTT+A+ V ++ GA Sbjct: 10 EQYRPKSVDDCILPTSIKN---SFKAFVEQGEIPNLLLTGSAGVGKTTIAKAVCEQIGAS 66 Query: 25452 FVPFSAVLGGVKEIR--EIVXXXXXXXXXXXXXT------ILFVDEIHRFTRAQQDAFLP 25607 ++ V+ G E R + V T ++ +DE T Q + Sbjct: 67 YI----VINGSDEGRFLDTVRNRVRQFATTVSLTSGAPHKVVIIDEADNTTHDVQLSLRT 122 Query: 25608 HVEDGTITLIGATTENPSFEVNAALLSRCRVATLRALTEDEVAALLDRATAAPEGLAGAV 25787 VE+ T N ++ L SRC V R E E L + +G+ Sbjct: 123 AVEEFHGNCRFIFTCNFQNKIIEPLHSRCTVIDFRIKKEQE-QILQGQFFVRLKGILDDN 181 Query: 25788 ALAPEARDTIARL---SYGDARKALNALEVSAAAVRLAGRPAVEKADAEEALQARTVNYD 25958 + + + IA+L Y D R+ +N + AA ++ V+ AD +N D Sbjct: 182 KIVYDDK-IIAKLIKRYYPDWRRLINEAQRHAATGKIDTGVLVDIAD---------INLD 231 Query: 25959 K----QGEEHYNVVSAFIKSLRGSDPDAAVYYMVRMLEAGEDPRFVLRRMVIFA 26108 + + + V ++ +DP+ + + +L P+++ ++I A Sbjct: 232 QLLSALKNKEFTTVRKWVVENIDNDPNIVMRKIYDLLYENIKPKYIPEAVLILA 285 >ref|NP_690647.1|morphogenesis protein Length = 365 Score = 41.6 bits (96), Expect = 0.008 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 14/99 (14%) Frame = -1 Query: 20723 HQG---LDIATPHGQ-PIYTPSDGTVVFSGTEGAY-----GKVLVLDHGYGVKTRY---- 20583 H+G +D H + P Y P D T V+ G E AY K ++ G RY Sbjct: 188 HKGTLCIDFVGKHEKYPYYAPCDCTCVWRGDESAYLAWTSDKEVMCADG---TVRYITWV 244 Query: 20582 -AHLSEIFVRLGDRVKRGDKVAAVGNTGRSTGPHLHYEV 20469 H + +G ++K+G+ + G GR+TG HLH V Sbjct: 245 CVHDENLLYNVGKKLKKGELMGHSGKGGRATGDHLHLNV 283 Score = 40.8 bits (94), Expect = 0.013 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Frame = +1 Query: 1429 EGTPVLAAADGSVIYAGEQAGYGAVV----ILRHDGG---LVTLYAHNSEVLVKEGARVG 1587 E P A D + ++ G+++ Y A ++ DG + + H+ +L G ++ Sbjct: 201 EKYPYYAPCDCTCVWRGDESAYLAWTSDKEVMCADGTVRYITWVCVHDENLLYNVGKKLK 260 Query: 1588 RGQPIARVGQTGRTTGPHLHFEVREGTR 1671 +G+ + G+ GR TG HLH V EG + Sbjct: 261 KGELMGHSGKGGRATGDHLHLNVIEGNK 288 >ref|NP_891600.1|Gp44 Length = 324 Score = 41.2 bits (95), Expect = 0.010 Identities = 51/239 (21%), Positives = 93/239 (38%), Gaps = 20/239 (8%) Frame = +3 Query: 25353 IEADQVPSLILWGP-PGTGKTTLARIVAQRTGADFVPFSAVLGGV----KEIREIVXXXX 25517 ++ ++PS+IL P PGTGKTT+A+ + + G D++ + + EI Sbjct: 37 VKQGRIPSMILHSPSPGTGKTTVAKALCEDVGVDYLFVNGADCKIDFIRDEITRFAQSVS 96 Query: 25518 XXXXXXXXXTILFVDEIHRFTRAQQDAFLPHVED---GTITLIGATTENPSFEVNAALLS 25688 ++ +DE R A L + +T I T N + AL S Sbjct: 97 LDEEKREKGKVVIIDEYDRAGLADAQRHLRSFSEAYSNNVTFI--ITANDLEGIIPALRS 154 Query: 25689 RCRVATLRALTEDEVAALLDRATAAPEGLAGAVALAPEARDTIARL---SYGDARKALNA 25859 R T + T+D+ ++ + + + E +A L ++ D R+ + Sbjct: 155 RFDPITFGSPTKDDQLRMMKEMIVRCKAILDKEGVPVEEMRVLAELVKQNFPDFRRVMKL 214 Query: 25860 LE-------VSAAAVRLAGRPA-VEKADAEEALQART-VNYDKQGEEHYNVVSAFIKSL 26009 L+ + A + + + E D EAL+ + N K + N + F+K L Sbjct: 215 LDRYAKHGKIDAGVLSMVIESSNTEVTDVVEALKTKQFANVRKLAPRYTNTYAQFVKKL 273 >ref|NP_039722.1|predicted 14.5Kd protein Length = 130 Score = 40.0 bits (92), Expect = 0.022 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -1 Query: 40601 CIFHGERTPSFHVYPEDKHFKCYGCGAYGDVFTFLQRLEGKEFPEVVR-ALAQEVGVEIP 40425 C FHG+ TPS V + + + C CG GDV + ++ E F E R A VG +P Sbjct: 31 CPFHGDETPSAAVSYDLQGYNCMACGVRGDVISIIRHEEEVTFAEAKRIAENLSVGGNVP 90 >ref|NP_817647.1|gp58 Length = 135 Score = 39.7 bits (91), Expect = 0.029 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%) Frame = -1 Query: 40664 VVAVIGRH---MELKRSGRT-W-KGNCIFHGERTPSFHVYPEDKHFKCYGCGAYGDVFTF 40500 +V VI R+ E R GR W K C FHG+ TPS + + F+C+ C G Sbjct: 7 IVKVIHRYHPEWEPPRQGRNDWMKTRCPFHGDETPSASISFKHNAFRCFACPVKGSAVAI 66 Query: 40499 LQRLEGKEFPEVVRALAQEV 40440 ++ E + E R +A+E+ Sbjct: 67 IKEQEEVSYAEAKR-IAEEL 85 >ref|NP_049665.1|gp44 clamp loader subunit, DNA polymerase accessory protein Length = 319 Score = 36.6 bits (83), Expect = 0.24 Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 5/172 (2%) Frame = +3 Query: 25365 QVPSLILWGP-PGTGKTTLARIVAQRTGADFVPFSAVLGGVKEIREIVXXXXXXXXXXXX 25541 ++P +IL P PGTGKTT+A+ + AD + + + +R + Sbjct: 41 KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGR 100 Query: 25542 XTILFVDEIHRFTRAQQDAFL-PHVEDGTITLIGATTENPSFEVNAALLSRCRVATLRAL 25718 ++ +DE R A+ L +E + T N + L SRCRV T Sbjct: 101 QKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQP 160 Query: 25719 TEDEVAALLDRATAAPEGLAGAVALAPEARDTIARL---SYGDARKALNALE 25865 T+++ ++ + + +A +A L ++ D RK + L+ Sbjct: 161 TDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELD 212 >ref|NP_073696.1|morphogenesis protein Length = 355 Score = 36.2 bits (82), Expect = 0.32 Identities = 14/40 (35%), Positives = 25/40 (62%) Frame = +1 Query: 1546 HNSEVLVKEGARVGRGQPIARVGQTGRTTGPHLHFEVREG 1665 H+ ++L G ++ +GQ + R G +G ++G H H +V EG Sbjct: 249 HDDDLLFNVGDKLHKGQLMGRTGNSGNSSGEHWHLDVWEG 288 >ref|NP_438139.1|hypothetical protein Length = 160 Score = 35.8 bits (81), Expect = 0.41 Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 14/132 (10%) Frame = -1 Query: 41198 AMREKDTLKLSVVRMLKSAVKYREIELMKPLDDAGVQGVIASEIKRRRDSVEQYRAGNRQ 41019 A R K LK + + L S + + + K L+ G S I + VEQ GN + Sbjct: 35 ARRRKKELKTIIEQALNSVIPNEKAQ--KKLESLGFDPTFQSAIALK--VVEQAMNGNLR 90 Query: 41018 -------------DLVDKEEAEIRILQAWLPAQLTEDELRAKVDAA-VQATGAQGPKDMG 40881 D +D++E RI A +LT DE R +++ V+ +G K Sbjct: 91 AVELISNISFAGKDSLDRKEQRQRIKAA----ELTTDEQRTRIELLKVKLDAEKGAKPDT 146 Query: 40880 AVMKALLPEVQG 40845 ++MKALL V+G Sbjct: 147 SLMKALLDAVEG 158 >ref|NP_795575.1|hypothetical protein Length = 157 Score = 35.8 bits (81), Expect = 0.41 Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 14/132 (10%) Frame = -1 Query: 41198 AMREKDTLKLSVVRMLKSAVKYREIELMKPLDDAGVQGVIASEIKRRRDSVEQYRAGNRQ 41019 A R K LK + + L S + + + K L+ G S I + VEQ GN + Sbjct: 32 ARRRKKELKTIIEQALNSVIPNEKAQ--KKLESLGFDPTFQSAIALK--VVEQAMNGNLR 87 Query: 41018 -------------DLVDKEEAEIRILQAWLPAQLTEDELRAKVDAA-VQATGAQGPKDMG 40881 D +D++E RI A +LT DE R +++ V+ +G K Sbjct: 88 AVELISNISFAGKDSLDRKEQRQRIKAA----ELTTDEQRTRIELLKVKLDAEKGAKPDT 143 Query: 40880 AVMKALLPEVQG 40845 ++MKALL V+G Sbjct: 144 SLMKALLDAVEG 155 >ref|NP_958209.1|gene 33 protein Length = 322 Score = 35.8 bits (81), Expect = 0.41 Identities = 57/244 (23%), Positives = 104/244 (42%), Gaps = 5/244 (2%) Frame = -3 Query: 36606 RKVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRS 36427 RK +A+L + + G+G+ L+E+ + + R+ +R + K R P Sbjct: 49 RKEIASLAYKVAQTKTYLDGLGKDLVAELKEIPKLIDANRKTVRDRLDELKAKARQP--- 105 Query: 36426 KRLKSFVES*STPSRATRI**RVPAGASGP*LNGQSARLITDAIQVRILVGPLVATSREN 36247 L + E + R+ A A+ I ++ IL+ RE Sbjct: 106 --LTDYEEEQA----------RIKAEEEAKAAAEALAKQIESDHEIAILMDREFDRQREE 153 Query: 36246 GRTALSSLREKLKTLEELQQIDLDSNEVRAELETLPAKRAEID---QRVAEARRAYDE-E 36079 R L + +EK + E L++ E +A E +AEI+ +R AEA+ A + E Sbjct: 154 AR--LKAEQEKREHEERLKR----EAEEKARAEAEAKAKAEIEAAARREAEAKAAAERAE 207 Query: 36078 KARVEGNERERRQLESLLAMERDKVKKWEGRLGEIRTPREYA-ALSREIDIAKKTNDGQS 35902 + R+E +R +R+ + A ER + +K E R +E A + RE + ++ + Sbjct: 208 RERIEAEQRAQREAKE--AAERAEREKQAAIEAERRKAQEEAERIRREAEAKEQARIAEE 265 Query: 35901 EQIK 35890 ++IK Sbjct: 266 KRIK 269 >ref|NP_705683.1|gp59 Length = 361 Score = 35.8 bits (81), Expect = 0.41 Identities = 41/142 (28%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Frame = -1 Query: 20744 YTAERKMHQGLDIATPHGQP-----IYTPSDGTVVFSGTEGAYGKVL--VLDHGYGVKTR 20586 Y +K+ L A+P QP + TP+D F T+ + KV V V Sbjct: 47 YPLGKKVRDFLLAASPVEQPATAPIVSTPADERAAFDLTDMEWLKVFERVCASIPNVFGS 106 Query: 20585 YAHLSEIFVRLGDRVKRGDKVAAVGNTGRSTGPHLHYEVRVNGIPENPRKFILE*SWPGV 20406 Y S F R R+ + A+ TG HL E +E S V Sbjct: 107 YVKASAAFAREAIRMSEEARAASASETGADDLTHLTDEQ-------------IEKSREAV 153 Query: 20405 RSW*ARRTT--SGPAPRDQRAA 20346 R W ARR P+P D+RAA Sbjct: 154 REWWARRDALQPAPSPADERAA 175 >ref|NP_690779.1|ORF46 Length = 300 Score = 35.8 bits (81), Expect = 0.41 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +1 Query: 979 GIVHVVRRGETLYRIARAYGIDPADLMETNGIADPRNVAVGTELFVPGASAPAE 1140 G + V++G+TL IA G+ A L NGI + + VG L + GA+ ++ Sbjct: 167 GATYTVKKGDTLSEIAVKTGVSMAKLQAYNGIKNANKITVGQVLKLTGAAGSSK 220 >ref|NP_943898.1|gp44 clamp loader subunit Length = 321 Score = 35.8 bits (81), Expect = 0.41 Identities = 39/191 (20%), Positives = 77/191 (40%), Gaps = 12/191 (6%) Frame = +3 Query: 25353 IEADQVPSLILWGP-PGTGKTTLARIVAQRTGADFVPFSAVLGGVKEIREIVXXXXXXXX 25529 + ++P ++L+ PGTGKTT+AR++ A+ + S + ++R + Sbjct: 39 VTTGRIPHILLFSKSPGTGKTTMARVLCNEIDAEVMFISGGKLRIDDLRNDLTAFASTMT 98 Query: 25530 XXXXXTILFVDE--------IHRFTRAQQDAFLPHVEDGTITLIGATTENPSFEVNAALL 25685 ++ +DE +H R+ +AF ++I T N + L Sbjct: 99 RKPGGKVIIIDEGDNKGMKAVHEELRSWMEAF-----SSNCSVI--MTCNNVEAIPGPLK 151 Query: 25686 SRCRVATLRALTEDEVAALLDRATAAPEGLAGAVALAPEARDTIARL---SYGDARKALN 25856 SR R T+D+ ++ E + + E+R IA L ++ D R + Sbjct: 152 SRFRQIEFGNPTQDDKLRMMKEMIVRCETICEMEGVVVESRKAIAALVKQNFPDLRGTIT 211 Query: 25857 ALEVSAAAVRL 25889 L+ A + ++ Sbjct: 212 MLDSYAKSGKI 222 >ref|NP_040731.1|morphogenesis protein A Length = 365 Score = 35.8 bits (81), Expect = 0.41 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 7/80 (8%) Frame = -1 Query: 20687 PIYTPSDGTVVFSGTEGAY------GKVLVLDHGYGVKTRY-AHLSEIFVRLGDRVKRGD 20529 P Y P D T V+ G AY +V+ D T H S + +G ++K+GD Sbjct: 204 PYYAPCDCTCVWRGDASAYLAWTSDKEVMCADGSVRYITWVNVHESPLPFDVGKKLKKGD 263 Query: 20528 KVAAVGNTGRSTGPHLHYEV 20469 + G G TG H H+ V Sbjct: 264 LMGHTGIGGNVTGDHWHFNV 283 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 125,535,686 Number of Sequences: 14420 Number of extensions: 2224615 Number of successful extensions: 9883 Number of sequences better than 0.5: 36 Number of HSP's better than 0.5 without gapping: 5157 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9836 length of database: 3,019,461 effective HSP length: 116 effective length of database: 1,346,741 effective search space used: 22306071183 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig62 (41,347 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817564.1|gp117 339 1e-92 ref|YP_195193.1|hypothetical protein 86 2e-16 ref|NP_818252.1|gp201 83 2e-15 ref|YP_024521.1|putative DNA repair protein 81 7e-15 ref|YP_164688.1|recombinase A 56 2e-07 ref|NP_049656.2|UvsX RecA-like recombination protein 47 1e-04 ref|YP_195169.1|RecA-like recombination protein 46 3e-04 ref|NP_775212.1|hypothetical protein 42 0.006 ref|NP_861734.1|UvsX RecA-like recombination protein 39 0.053 ref|NP_612899.1|hypothetical protein 35 0.45 >ref|NP_817564.1|gp117 Length = 320 Score = 339 bits (869), Expect = 1e-92 Identities = 163/315 (51%), Positives = 233/315 (73%), Gaps = 1/315 (0%) Frame = +2 Query: 25703 AIELAVASIEKAFGKGSIMRLGNEDALVKDVQAVSTGAISLDIALGVGGFPRGRIIEIYG 25882 +++ A+A ++K FG GS M+LG++ + V + TG+I+LD ALG+GG+PRGR++EIYG Sbjct: 2 SLKEALAEVDKRFGAGSAMKLGDKP---QTVDVIPTGSIALDGALGIGGYPRGRVVEIYG 58 Query: 25883 PESSGKTTLALHAIAEAQRRGGIAAFVDAEHALDVGYARKLGVRTDDLLISQPDSGEQAL 26062 PESSGK+TL LHA+A AQ+ GG AA++DAEH+LD YA+ LGV D+L++ QPD+GEQAL Sbjct: 59 PESSGKSTLCLHAVANAQKAGGNAAYIDAEHSLDPEYAKALGVDLDNLVVVQPDTGEQAL 118 Query: 26063 EIVETLVRSGAIXXXXXXXXXXXXPKAELEGEMGDAHMGVQARLMSQALRKLTGTISKSS 26242 EIV+ LV+SG + P+AELEG++GD+H+G+ ARLMSQA+RKLTGTIS ++ Sbjct: 119 EIVDLLVKSGELSIVVVDSVAALVPRAELEGDIGDSHVGLHARLMSQAMRKLTGTISSTN 178 Query: 26243 TIVIFINQIRMKIG-VMFGNPETTTGGNALKFYASQRLDIRRIGAIKDGDSVIGNRTRXX 26419 T+ +++NQ+R KIG V +G ETTTGG AL+FYAS R+D+RRI K+GD +GNRTR Sbjct: 179 TLTLWVNQLREKIGNVGYGPNETTTGGKALRFYASVRMDVRRIATEKEGDEAVGNRTRVK 238 Query: 26420 XXXXXXAPPFKEVEFDIMYGHGISREGDVLDLASNEGIVEKSGTWFSFGGERIGQGREQT 26599 APP + EF ++YG GISRE ++LDLA ++G+V+KSG WF +G + + QG+ + Sbjct: 239 VVKNKLAPPHRNAEFSVVYGEGISREVELLDLAVSQGLVKKSGAWFKYGDKNVAQGKPKA 298 Query: 26600 KAFFREHPEILQQVE 26644 + + +P+I +E Sbjct: 299 VQWLKANPDITDSIE 313 >ref|YP_195193.1|hypothetical protein Length = 120 Score = 86.3 bits (212), Expect = 2e-16 Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 2/87 (2%) Frame = -3 Query: 35600 LASYYG--KRHHGRRTASGSRFDMHAMTCAHRTAPFGTRLKVTSLESGKSVVVKVTDRGP 35427 LAS+YG +HG+RTA+G R++ + + AHR PFGTRL+VT+ +GKSV+V+V DRGP Sbjct: 29 LASHYGIGDGYHGQRTANGERYNAYGKSVAHRYLPFGTRLRVTNQRTGKSVIVRVNDRGP 88 Query: 35426 FAGGRVVDLSYAAARKLGMVEDGVVRV 35346 + R +DLSY A + GV RV Sbjct: 89 YVYDRDLDLSYGAFSTIAPPSQGVARV 115 >ref|NP_818252.1|gp201 Length = 362 Score = 82.8 bits (203), Expect = 2e-15 Identities = 75/303 (24%), Positives = 139/303 (45%), Gaps = 23/303 (7%) Frame = +2 Query: 25718 VASIEKAFGKGSIMRLGNEDALVKDVQA---VSTGAISLDIALGVGGFPRGRIIEIYGPE 25888 ++ ++ +G+ ++M + KD+ V +G ++LD A+GVGG P R+IEI G E Sbjct: 11 LSDVQNKYGENAVM-------MAKDMVTYPPVRSGTLALDFAIGVGGLPSDRVIEIGGTE 63 Query: 25889 SSGKTTLALHA-----IAEAQRRGGIAAFVDAEHALDVGYARKL---GVRTDDLLISQPD 26044 +GKTTL+L A +A+ +R A +D EH + +A +L + D ++ +QPD Sbjct: 64 GTGKTTLSLLAMQQFLLAQPER---FALVLDLEHKMTKDWAVQLVGEELWDDRVIYAQPD 120 Query: 26045 SGEQALEIVETLVRSGAIXXXXXXXXXXXXPKAELEGEMGDAHMGVQARLMSQALRKLTG 26224 EQA + LV SG I +A +E E +G A +++ R + Sbjct: 121 HVEQATNMYSDLVGSGQICFALFDSIGGAAVRAGIEKEAEKVQVGGNANAITKFARLASN 180 Query: 26225 TISKSSTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIR-----RIGAIKDGD 26389 +K + + NQ R+ + T GGN K R+ ++ ++ + +G+ Sbjct: 181 FSAKYRCLTVGTNQERVDMEGF--RRYMTPGGNGWKHACILRIRLKASTQDKVETVVNGE 238 Query: 26390 S-VIGNRTRXXXXXXXXAPPFKEVEFDIM------YGHGISREGDVLDLASNEGIVEKSG 26548 V+G + A P + + + YG GI +++ LA G++++ Sbjct: 239 KMVVGRKIHAQIVKNQLAAPGRSAWWWMYHVPTEEYGFGIDTLDEIVRLAILTGVIKQRV 298 Query: 26549 TWF 26557 +++ Sbjct: 299 SYY 301 >ref|YP_024521.1|putative DNA repair protein Length = 418 Score = 81.3 bits (199), Expect = 7e-15 Identities = 73/315 (23%), Positives = 133/315 (42%), Gaps = 38/315 (12%) Frame = +2 Query: 25826 DIALGVGGFPRGRIIEIYGPESSGKTTLALHAIAEAQRRGGIAAFVDAEHALDVGYARKL 26005 D LG GG P GR+ E+YG SGK+T A+H A + G I ++D E D +L Sbjct: 49 DYILG-GGIPLGRLTEVYGLTGSGKSTFAVHLSRIATQLGVITIWIDIEGTADNNRMEQL 107 Query: 26006 GVRTDDLLISQPDSGEQALEIVETLVRSGAIXXXXXXXXXXXXP---------------- 26137 GV L Q G + ++ + G P Sbjct: 108 GVDVSKLFSIQSGEGRLKNTVELSVEQVGKELEYWIDTFNEKIPGVPIVFIWDSLGATRT 167 Query: 26138 KAELEGEMGDAHMGVQARLMSQALRKLTGTISKSSTIVIFINQIRMKIGV-MFGNPETTT 26314 + E++G + + MG++A + + +T ++ ++T +I INQ R + M+G+P +T Sbjct: 168 QKEIDGGIDEKQMGLKASATQKVINAVTPKLNDTNTGLIVINQARDDMNAGMYGDPIKST 227 Query: 26315 GGNALKFYASQRLDIRRIGAIKD------GDSVIGNRTRXXXXXXXXAPPFKEVEFDIMY 26476 GG A + AS R+ + + +K D G+ R + P ++ E D++ Sbjct: 228 GGRAFEHSASLRIKVHKASQLKQKSELTGKDEYHGHIMRIETKKSKLSRPGQKAEADLLS 287 Query: 26477 GHGISREGDVLDL------------ASNEGIVEKSGTWFSF---GGERIGQGREQTKAFF 26611 + + +E D + L A G++ K G W ++ GE I + Sbjct: 288 DYMVGKEDDPILLNGIDLEHTVYKEAVERGLITK-GAWRNYVTLNGEEIKLRDAEWVPVL 346 Query: 26612 REHPEILQQVEARLF 26656 +++ E+ ++ +R++ Sbjct: 347 KDNKELYLELFSRVY 361 >ref|YP_164688.1|recombinase A Length = 405 Score = 56.2 bits (134), Expect = 2e-07 Identities = 66/274 (24%), Positives = 113/274 (41%), Gaps = 28/274 (10%) Frame = +2 Query: 25841 VGGFPR-GRIIEIYGPESSGKTTLALHAIAEAQRRGGIAAFVDAEHALDVGYARKLGVRT 26017 V G P GR+ E++G SSGK+TL + A + I + D E +D LGV Sbjct: 46 VSGIPSSGRVTEVFGLPSSGKSTLMGLVMKNALKMNVIPIYFDVEETMDSERLEGLGVDP 105 Query: 26018 DDLLISQPDSGEQAL-------EIVETLVRSGA---------IXXXXXXXXXXXXPKAEL 26149 ++ P+ + EI +V A K E Sbjct: 106 SKVITVTPEINKDNTVTPLYIEEITNYIVNMAAKIHSQSSELTSMFIIDSVGFTQSKLEA 165 Query: 26150 EGEMGDAHMGVQARLMSQALRKLTGTISKSSTIVIFINQIRMKIGVMFGNPE----TTTG 26317 + A +G QA+ ++ RK+ +S ++ ++I +NQ R + NP+ + G Sbjct: 166 NTDSESATVGQQAKALAIMARKVQANLSYNNGMLIGLNQGRDDMKAP--NPKYAQTKSLG 223 Query: 26318 GNALKFYASQRLDIRRIGAIKDGDS---VIGNRTRXXXXXXXXAPPFKE-VEFDIMYGHG 26485 G + + S RL I++ AIK +S +G T+ + V ++ G Sbjct: 224 GKGWEHFTSSRLRIQKTTAIKMHNSDKNAVGFDTKVTVVKSKVGDNVTDAVTIKLLGARG 283 Query: 26486 ISREGDVLDLASNEGIVEKSGTWFSF---GGERI 26578 RE ++ +EGI++ SG W+++ GE+I Sbjct: 284 FDRETNIFYGGVDEGIIKGSG-WYTYVNDDGEQI 316 >ref|NP_049656.2|UvsX RecA-like recombination protein Length = 391 Score = 47.4 bits (111), Expect = 1e-04 Identities = 69/309 (22%), Positives = 122/309 (39%), Gaps = 10/309 (3%) Frame = +2 Query: 25712 LAVASIEKAFGKGSIMRLGNEDALVKDVQAVSTGAISLDIALGVGGFPRGRIIEIYGPES 25891 L AS K + + + NE +V+ + A+S +I GG G +I + GP Sbjct: 8 LIKASTSKLTAELTASKFFNEKDVVRTKIPMMNIALSGEIT---GGMQSGLLI-LAGPSK 63 Query: 25892 SGKTTLALHAIAEAQRR--GGIAAFVDAEHALDVGYARKLGVRTDDLLISQPDSGEQ-AL 26062 S K+ L ++ R+ + F D+E + Y R +GV + ++ + S EQ + Sbjct: 64 SFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRI 123 Query: 26063 EIVETL--VRSGAIXXXXXXXXXXXXPKAELEGEMGDAHMG--VQARLMSQALRKLTGTI 26230 ++V L + G K E E + + + +A+ M R +T Sbjct: 124 DMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYF 183 Query: 26231 SKSSTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKDGDSVIGNRT 26410 S + I IN + MF +T GG Y++ + I IKDG + G + Sbjct: 184 STKNIPCIAINH-TYETQEMFS--KTVMGGGTGPMYSADTVFIIGKRQIKDGSDLQGYQF 240 Query: 26411 RXXXXXXXXAPPFKEVEFDIMYGHGISREGDVLDLASNEG-IVEKSGTWFS--FGGERIG 26581 + D+ + GI +LD+A G +V+ W++ F E G Sbjct: 241 VLNVEKSRTVKEKSKFFIDVKFDGGIDPYSGLLDMALELGFVVKPKNGWYAREFLDEETG 300 Query: 26582 QGREQTKAF 26608 + + K++ Sbjct: 301 EMIREEKSW 309 >ref|YP_195169.1|RecA-like recombination protein Length = 343 Score = 46.2 bits (108), Expect = 3e-04 Identities = 67/326 (20%), Positives = 126/326 (38%), Gaps = 19/326 (5%) Frame = +2 Query: 25745 KGSIMRLGNEDALVKDVQA-VSTGAISLDIALG---VGGFPRGRIIEIYGPESSGKTTLA 25912 K +E DV++ V TG+ + + GG P +I + G +GKT Sbjct: 12 KNEYAAFASEGVAAGDVESFVDTGSYIFNALVSGSIFGGIPSNKITALAGESGTGKTFFC 71 Query: 25913 LHAIAEAQRRGGIAA--FVDAEHALDVGYARKLGVRTDDLLISQPDSGE----QALEIVE 26074 L + A + + E A+ G+ + ++I D+ E QA+ I++ Sbjct: 72 LSVVRNFLNTDPDAGVIYFETESAISKQMIESRGIDSTRMIIFPVDTIEDFRTQAVRIID 131 Query: 26075 TLVRSGAIXXXXXXXXXXXXPKAELEGEMGDAHMGVQ------ARLMSQALRKLTGTISK 26236 + + E+ DA Q A+++ A R LT + K Sbjct: 132 KYMEQNKSERKPLMFVLDSLGMLATKKEVEDASNDKQVRDMTKAQIVKSAFRILTLKMGK 191 Query: 26237 SSTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKDGDSVIGNRTRX 26416 ++ ++ N +G E GG+ LK+ AS + + + KDG ++GN + Sbjct: 192 ANIPMLVTNHTYDVVGSYVPTKE-MGGGSGLKYSASTIVYLGK-KKEKDGTDLVGNIIKC 249 Query: 26417 XXXXXXXAPPFKEVEFDIMYG-HGISREGDVLDLASNEGIVEKSGTWFSFGGERI--GQG 26587 +VE + + G+ R +L+L G+ + + + G+++ Q Sbjct: 250 EAKKSRLTREGSKVETRLFFDQRGLERYYGMLELGERAGLWKNTAGRYEINGKKVYGKQI 309 Query: 26588 REQTKAFFREHPEILQQVEARLFEKF 26665 FF E EILQ+++ + +F Sbjct: 310 LANPDEFFTE--EILQELDKQAQREF 333 >ref|NP_775212.1|hypothetical protein Length = 517 Score = 41.6 bits (96), Expect = 0.006 Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 12/114 (10%) Frame = +1 Query: 20077 MCGIVGYVGPRQCVDLIVGGLRKLE----YRGYDSAGVAVVGP--NGLAVKRAKGKLQNL 20238 MCG+VG+ D + L+ L RG + G+A V P N +++ + + Sbjct: 1 MCGLVGFCSTTNASDNEIALLKNLLAADIVRGAHATGLAKVDPIKNEVSIHKMAVDAYDF 60 Query: 20239 VALLADAPLAGTTG-----IGHTRWATHGKPSD-ENAHPHCYGGVAVVHNGIIE 20382 +A D T IGH R+AT G D ENAHP + +VHNG ++ Sbjct: 61 LAH-EDTKKFLTENRARIYIGHNRYATMGDKGDHENAHPFQVDHITMVHNGTVD 113 >ref|NP_861734.1|UvsX RecA-like recombination protein Length = 390 Score = 38.5 bits (88), Expect = 0.053 Identities = 62/284 (21%), Positives = 109/284 (38%), Gaps = 15/284 (5%) Frame = +2 Query: 25802 VSTGAISLDIALGVG---GFPRGRIIEIYGPESSGKTTLALHAIAEAQRR--GGIAAFVD 25966 V T L+IALG G G I P KT L +A ++ I F D Sbjct: 32 VPTRIPMLNIALGGALNAGLQSGLTI-FAAPSKHFKTLFGLTMVAAYMKKYKDAICLFYD 90 Query: 25967 AEHALDVGYARKLGVRTDDLLISQPDSGEQ-ALEIVETL--VRSGAIXXXXXXXXXXXXP 26137 +E Y R +GV D ++ + S EQ +++ L + G Sbjct: 91 SEFGASESYFRSMGVDLDRVVHTPIQSVEQLKVDMTNQLDAIERGDKVIIFIDSIGNTAS 150 Query: 26138 KAELEGEMGDAHMGVQARLMSQALRKLTGTISKSSTI----VIFINQIRMKIGVMFGNPE 26305 K E E + + +G +R ++AL+ L ++ TI + IN M+IG ++ P+ Sbjct: 151 KKETEDALNEKVVGDMSR--AKALKSLFRIVTPYLTIKDIPCVAINHTAMEIGGLY--PK 206 Query: 26306 TTTGGNALKFYASQRLDIRRIGAIKDGDSVIGNRTRXXXXXXXXAPPFKEVEFDIMYGHG 26485 GG Y++ + +K+G + G + + G Sbjct: 207 EIMGGGTGILYSANTVFFISKRQVKEGTELTGYDFTLKAEKSRTVKEKSTFPITVNFDGG 266 Query: 26486 ISREGDVLDLASNEG-IVEKSGTWFS--FGGERIGQGREQTKAF 26608 I +L++A+ G +V+ W++ F E G+ + K++ Sbjct: 267 IDPFSGLLEMATEIGFVVKPKAGWYAREFLDEETGEMIREEKSW 310 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 35.4 bits (80), Expect = 0.45 Identities = 38/133 (28%), Positives = 48/133 (36%), Gaps = 1/133 (0%) Frame = +3 Query: 17415 PRGAVGRHELALDLGGAGHERGVAEHGAPGEQPLLHLGHGVEEPLGPVAAFPRVLVLERL 17594 PRG G G G + E G G+Q + +P GP A P+ ER Sbjct: 293 PRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGP--AGPQGPKGERG 350 Query: 17595 QEPDHDAAAGRGQRHRHDPVPAVAPLERRPLAGPVRGEVRLGEHPALGLRGPRDPPG-EG 17771 + RG+R P P R G + +G G GPR PG G Sbjct: 351 EAGPQGPMGARGERGDTGPRGEPGPAGPRGERGETGPQGPMGARGERGETGPRGEPGPAG 410 Query: 17772 PAVERLGVAPEGP 17810 P ER P+GP Sbjct: 411 PRGERGETGPQGP 423 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,323,795 Number of Sequences: 14420 Number of extensions: 1751650 Number of successful extensions: 7618 Number of sequences better than 0.5: 10 Number of HSP's better than 0.5 without gapping: 4246 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7591 length of database: 3,019,461 effective HSP length: 115 effective length of database: 1,361,161 effective search space used: 18601626226 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig63 (55,344 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_570377.1|unknown 40 0.018 ref|YP_025038.1|putative minor tail protein 40 0.024 ref|NP_943898.1|gp44 clamp loader subunit 40 0.031 ref|NP_817450.1|gp112 39 0.041 ref|NP_700429.1|hypothetical protein 39 0.053 ref|NP_599085.1|unknown 36 0.45 >ref|NP_570377.1|unknown Length = 92 Score = 40.4 bits (93), Expect = 0.018 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +3 Query: 49635 RREVWARDGGRCTFVLASGERCESAHRLELDHIVPRARGGDS-TADNLRIRCRGHNLEE 49808 R + ARDG CT+ C S L LDHIVPR +GG A N+ CR N ++ Sbjct: 24 RDNIMARDGYTCTY-------CGSKDNLTLDHIVPRCKGGARWDASNVTTACRRCNQDK 75 >ref|YP_025038.1|putative minor tail protein Length = 1299 Score = 40.0 bits (92), Expect = 0.024 Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 15/192 (7%) Frame = -1 Query: 14046 KYARDPEDWMDAQQRIAAIQEKSGNGAAAQRTYQ--AGYAYWRRNRDKVKERGLGLVAQA 13873 K A D ++ + + A+ S N AQ AG A + K GLG +A Sbjct: 12 KIALDLLSASESVKSLTAVVRSSQNAWKAQEAEMKSAGDAV---GAAQAKYDGLGKSIEA 68 Query: 13872 MYLELEDDFTKYDKI---TLDVAPNYLKAQLQVKGRKLKQLEDAYGEVVKLKQAGPAICA 13702 +++ K ++ T DVA +LK Q Q+ G KQL + + KQA Sbjct: 69 QQSKIDALKAKQSELKGNTADVAQQFLKYQQQIDG-ATKQLASMQAQQDRAKQA----MD 123 Query: 13701 LYKIGLG-----YERFARALHAAPIPREIRG-----NKAFVEEYRAQLAQASEPLERKAV 13552 K GL Y ARA A E G NKA +E Y++ + +E L +++ Sbjct: 124 YQKSGLAGLQQEYTAAARANQAYVTRLEAEGNQQEANKAKMEGYKSSIVNLNEQLAKQSA 183 Query: 13551 EGFELAANASRD 13516 E ++AA + +D Sbjct: 184 ELDKIAAASGKD 195 >ref|NP_943898.1|gp44 clamp loader subunit Length = 321 Score = 39.7 bits (91), Expect = 0.031 Identities = 44/183 (24%), Positives = 73/183 (39%) Frame = -3 Query: 51277 ILCFVGPPGVGKTSLAKSIARSMNRRFVRISLGGVRDEAEIRGHRRTYIGALPGKIIQSL 51098 IL F PG GKT++A+ + ++ + IS G +R + ++R + + K Sbjct: 47 ILLFSKSPGTGKTTMARVLCNEIDAEVMFISGGKLRID-DLRNDLTAFASTMTRK----- 100 Query: 51097 KKAGSGNPVFLLDEVDKMSTDFRGDPSAALLEVLDPEQNFNFNDHYLDLDYDLSKVMFIC 50918 G V ++DE D + + +E S I Sbjct: 101 ----PGGKVIIIDEGDNKGMKAVHEELRSWMEAFS------------------SNCSVIM 138 Query: 50917 TANTMAGIPLPLQDRMEVIRLAGYTDLEKLSIAQRYLIPKQKEVNGLEHVPVEFKRSAMR 50738 T N + IP PL+ R I T +KL + + +I + + + +E V VE R A+ Sbjct: 139 TCNNVEAIPGPLKSRFRQIEFGNPTQDDKLRM-MKEMIVRCETICEMEGVVVE-SRKAIA 196 Query: 50737 ALV 50729 ALV Sbjct: 197 ALV 199 >ref|NP_817450.1|gp112 Length = 108 Score = 39.3 bits (90), Expect = 0.041 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = +3 Query: 49620 VPAHVRREVWARDGGRCTFVLASGERCE-SAHRLELDHIVPRARGGDSTADNLRIRCRGH 49796 VP +++ + RD C G + + + L DHI PR+RGG T DNLR C+ Sbjct: 38 VPHRLQQATFRRDNWTCQ---QCGRQAQPNTGELHADHIQPRSRGGADTLDNLRTLCKAC 94 Query: 49797 NLEEAR 49814 + ++R Sbjct: 95 HAPKSR 100 >ref|NP_700429.1|hypothetical protein Length = 116 Score = 38.9 bits (89), Expect = 0.053 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Frame = +3 Query: 49590 KKVRPSKPDHVPAH------VRREVWARDGGRCTFVLASGERCESAHRLELDHIVPRARG 49751 K+ +P + H + +R V RD G C L SG E+ +DHI+P+A G Sbjct: 34 KQYKPGQSRHQRGYGTKWDVIRARVLKRDKGLCQLCLRSGVVREAK---TVDHIIPKAHG 90 Query: 49752 GDSTADNLRIRC 49787 G T NL+ C Sbjct: 91 GTDTDSNLQSLC 102 >ref|NP_599085.1|unknown Length = 116 Score = 35.8 bits (81), Expect = 0.45 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Frame = +3 Query: 49590 KKVRPSKPDHVPAH------VRREVWARDGGRCTFVLASGERCESAHRLELDHIVPRARG 49751 K+ +P + H + +R V RD G C L +G E+ +DHI+P+A G Sbjct: 34 KQYKPGQSRHQRGYGSKWDVIRVRVLQRDKGLCQLCLRAGVAREAK---TVDHIIPKAHG 90 Query: 49752 GDSTADNLRIRC 49787 G NL+ C Sbjct: 91 GTDADSNLQSLC 102 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 136,795,399 Number of Sequences: 14420 Number of extensions: 2411093 Number of successful extensions: 10727 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 5366 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10706 length of database: 3,019,461 effective HSP length: 117 effective length of database: 1,332,321 effective search space used: 24421443930 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig64 (50,940 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_612994.1|hypothetical protein 46 3e-04 ref|NP_049482.1|serine 46 3e-04 ref|YP_024938.1|gp18 36 0.32 >ref|NP_612994.1|hypothetical protein Length = 348 Score = 46.2 bits (108), Expect = 3e-04 Identities = 40/198 (20%), Positives = 65/198 (32%), Gaps = 6/198 (3%) Frame = -3 Query: 3442 FEIVRELARGG-FGVVYAARDRTLGRSVAFKLVPSAASGXXXXXXXXXXXXXXXLTHPNI 3266 FE + +L G F VY A DR L + K + + HPNI Sbjct: 12 FEWISDLEEQGCFSKVYLAHDRHLAHDLVIKEIEKKEN-TNHDDYFNEARLLYKHAHPNI 70 Query: 3265 VTLFDVGRCAAGPYLVLELLRGETXXXXXXXXXXXXXXXXXXXXXXXXXXAHAHEAGVFH 3086 V + +C + Y+ + + H H G+ H Sbjct: 71 VQVQYAAQCESNIYIAMPFYHNGSLNQLMKKNNLTSREIIRYSIQFLSGLYHIHSKGLMH 130 Query: 3085 RDLSPGNVFLCEDGQVKVLDFGLAHAFGRPRTAG---GTPQYMAPEQRRGAPEDER--TD 2921 D+ P N+ + + + DFGL+ A G ++ PE + D D Sbjct: 131 FDIKPNNIMISNRNEAMLSDFGLSQLVNEESRAAPEFGYHFHVPPEYFSLSTNDYNFTYD 190 Query: 2920 VFALGAILFEMLTGEQPF 2867 ++ G ++ M G F Sbjct: 191 IYQAGLTIYRMCVGHDNF 208 >ref|NP_049482.1|serine Length = 348 Score = 46.2 bits (108), Expect = 3e-04 Identities = 40/198 (20%), Positives = 65/198 (32%), Gaps = 6/198 (3%) Frame = -3 Query: 3442 FEIVRELARGG-FGVVYAARDRTLGRSVAFKLVPSAASGXXXXXXXXXXXXXXXLTHPNI 3266 FE + +L G F VY A DR L + K + + HPNI Sbjct: 12 FEWISDLEEQGCFSKVYLAHDRHLAHDLVIKEIEKKEN-TNHDDYFNEARLLYKHAHPNI 70 Query: 3265 VTLFDVGRCAAGPYLVLELLRGETXXXXXXXXXXXXXXXXXXXXXXXXXXAHAHEAGVFH 3086 V + +C + Y+ + + H H G+ H Sbjct: 71 VQVQYAAQCESNIYIAMPFYHNGSLNQLMKKNNLTSREIIRYSIQFLSGLYHIHSKGLMH 130 Query: 3085 RDLSPGNVFLCEDGQVKVLDFGLAHAFGRPRTAG---GTPQYMAPEQRRGAPEDER--TD 2921 D+ P N+ + + + DFGL+ A G ++ PE + D D Sbjct: 131 FDIKPNNIMISNRNEAMLSDFGLSQLVNEESRAAPEFGYHFHVPPEYFSLSTNDYNFTYD 190 Query: 2920 VFALGAILFEMLTGEQPF 2867 ++ G ++ M G F Sbjct: 191 IYQAGLTIYRMCVGHDNF 208 >ref|YP_024938.1|gp18 Length = 637 Score = 36.2 bits (82), Expect = 0.32 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 8/102 (7%) Frame = +1 Query: 36898 VPGGVPARTTICATVTPAWASSRG----LAAFGTDGSG--DAQPAIQAAVNGCAE-GQVV 37056 +P GV I T + + G + +G G+G D AIQ +N A G V Sbjct: 232 IPVGVSRIWCIGGTTLSLYLPTNGAIPNVRNYGATGNGGVDDTLAIQECINSLASSGGEV 291 Query: 37057 YLPAGTYRLNSYLQITKGVTLRGAGK-TQTRLRAYLSSTAVI 37179 +LP G Y L S L + GV+LRGA + L A+ + +I Sbjct: 292 FLPPGVY-LYSTLTLPPGVSLRGASSFSSVLLEAHATGDCII 332 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 150,277,863 Number of Sequences: 14420 Number of extensions: 2793194 Number of successful extensions: 11932 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 5506 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11910 length of database: 3,019,461 effective HSP length: 116 effective length of database: 1,346,741 effective search space used: 22710093483 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig65 (60,000 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 46 5e-04 ref|NP_813780.1|internal virion protein D 40 0.026 ref|NP_064745.1|gp7 37 0.29 ref|NP_690779.1|ORF46 36 0.37 ref|NP_996722.1|lysin 36 0.37 >ref|NP_046572.1|ABC transporter Length = 705 Score = 45.8 bits (107), Expect = 5e-04 Identities = 23/62 (37%), Positives = 39/62 (62%) Frame = +1 Query: 40927 AHLSGGERQRVAIARALLARPQVLLADEPTGNLDAASGDGIIRLFQRMAADGMTVLVVTH 41106 ++LS G++QR+A+ARA+L +PQVL+ DE N+D + I RM ++++TH Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM---DCLIILITH 673 Query: 41107 EE 41112 + Sbjct: 674 ND 675 >ref|NP_813780.1|internal virion protein D Length = 1392 Score = 40.0 bits (92), Expect = 0.026 Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 2/122 (1%) Frame = -1 Query: 43719 FVKWLGRSHRYMERYRQILKEEGLPQDTVFLAM-IESGFGNFAYSRAKASGPWQFIAATG 43543 + K + Y + RQ G+P + + + IES F A S G QF ATG Sbjct: 7 YAKLVAEGTPYDDAIRQAADANGVPYEYLHKKIFIESSFNPDAKSPTGPLGLGQFTKATG 66 Query: 43542 KSYGLKQDFWVDERRDP-EXXXXXXXXXXXXXREQTGDWRLAWAGYNAGAGRVLAAQRMG 43366 K+YGL D ++R DP + GD YN G GR+ A Q Sbjct: 67 KAYGLMTD---EDRLDPIKSINASAQYTRDLMGTYKGDMLKVALAYNQGNGRLGAPQLAA 123 Query: 43365 YD 43360 D Sbjct: 124 LD 125 >ref|NP_064745.1|gp7 Length = 540 Score = 36.6 bits (83), Expect = 0.29 Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 2/181 (1%) Frame = -1 Query: 52980 SSSRANTVTTLLPGLSGRSALKSIFEEVAASGWTLKKTFWSFTNTNTSRRRAVGSAEGGT 52801 ++ + T L + SA + E AAS + + S TN+ TS +A SA Sbjct: 100 NAEASETAAGLSATAAATSATNAGASETAASA-SATASATSATNSATSASQAATSASAAA 158 Query: 52800 LAE--PCSLKVVPSTTGAPFSGSGESAMRGGSRCHTSATVPLRPAAFTGFTSPSAANA*R 52627 ++E + + + + SGS +A S SAT +A TS + A A + Sbjct: 159 VSEGNAATSETNAANSATSASGSASTATTQASAASVSAT-NAATSASNAATSATNAAASQ 217 Query: 52626 PFCHSTR*NSPKRASTGSTAPLRAAAMTGAVALAPVRSWASATSTRTAPCAAVRAGSSVA 52447 ++ N+ ST +T+ AA A + + AT+ T+ A + ++ A Sbjct: 218 AAAATSETNAAASESTVTTSATNAATSEANAATSASTATTQATNAATSASTASTSATNAA 277 Query: 52446 T 52444 T Sbjct: 278 T 278 >ref|NP_690779.1|ORF46 Length = 300 Score = 36.2 bits (82), Expect = 0.37 Identities = 17/43 (39%), Positives = 26/43 (60%) Frame = -1 Query: 42993 AGHVVRRGDSIGRIAQRYGVPAQGILEMNGLKNARKLRVGTEL 42865 A + V++GD++ IA + GV + NG+KNA K+ VG L Sbjct: 168 ATYTVKKGDTLSEIAVKTGVSMAKLQAYNGIKNANKITVGQVL 210 >ref|NP_996722.1|lysin Length = 429 Score = 36.2 bits (82), Expect = 0.37 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = -1 Query: 42720 QTLRVRAGDTLWSIAQRFGVELQDLCRWNGIKNP 42619 +T V++GD L SIA+R G +Q L NGI NP Sbjct: 385 RTYTVQSGDNLSSIARRLGTTVQSLVSMNGISNP 418 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 147,945,110 Number of Sequences: 14420 Number of extensions: 2692293 Number of successful extensions: 11843 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 5502 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11822 length of database: 3,019,461 effective HSP length: 117 effective length of database: 1,332,321 effective search space used: 26489206122 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig66 (52,811 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_040655.1|unknown protein 160 9e-39 ref|NP_039614.1|gene IV product 91 1e-17 ref|NP_510894.1|phage assembly protein 86 3e-16 ref|NP_040579.1|G IV protein 83 3e-15 ref|NP_047372.1|putative maturation protein 79 3e-14 ref|NP_047359.1|maturation protein 79 6e-14 ref|YP_164047.1|putative transposase B subunit 50 2e-05 ref|YP_024681.1|gp08 43 0.003 ref|NP_945044.1|gp14 40 0.017 ref|NP_056720.1|putative DNA binding protein 40 0.030 ref|YP_003907.1|putative tail tape measure protein 39 0.039 ref|NP_046572.1|ABC transporter 39 0.051 ref|NP_938251.1|putative tail component protein 39 0.066 ref|NP_597807.1|DNA binding protein 38 0.11 ref|NP_899326.1|gp44 37 0.15 ref|NP_049430.1|Hypothetical protein 36 0.43 ref|YP_164086.1|tail length tape measure protein 36 0.43 >ref|NP_040655.1|unknown protein Length = 430 Score = 160 bits (406), Expect = 9e-39 Identities = 115/437 (26%), Positives = 205/437 (46%), Gaps = 20/437 (4%) Frame = +3 Query: 42270 YTGRRITLDFHDIEIRNLLRLIADVSKKNIVVADDVSGKVTVSLRNVPWDQALDLVLRSK 42449 + R+T+ H+I+IR + L+AD +++V+ + G V++ +VP QA DL+L S Sbjct: 19 FASDRLTVKHHEIDIRVAIPLVADFCGRSVVLGPSIQGVVSLDFDDVPCSQAFDLLLESN 78 Query: 42450 GLGKEEMGNVIRIXXXXXXXXXXXXXXXXXXXRIPLI---PLKVRIIPVNYARANDVASR 42620 L +G+V+ I R L ++ R+I + +A A++V S Sbjct: 79 HLLSSMVGDVLVITAMDQVLNSERKADDLRTFRRDLFNANDIERRVINIVHASASEVVSL 138 Query: 42621 VKDVLSERG----SVSTDERTNVLIVKDIPEALVRA-EGLVRNLDTEIPQVLIESRIVEA 42785 K+ S++ DERTN + +P + A E +++ +D + QV IE+ +VEA Sbjct: 139 FKESFMSLDAPGMSMTVDERTNSVFAA-LPSSFFPALESVIQAIDVPVRQVAIEANVVEA 197 Query: 42786 SSNFNRQLGVQWGGNASF-----------TQATGNPTGVAFPNNVSXXXXXXXXXXXXTS 42932 S +++++LG+ WGG S + A G+ G F +N Sbjct: 198 SVDWSKRLGLNWGGALSLGNWSAVTAGDLSVAAGSSIGFGFLSNT--------------- 242 Query: 42933 ATPNYAVNLPXXXXXXXXXXXXXXXXXXXXAFNLNLRLSALENNGVVKTISSPKIATIDN 43112 +L+ +A+EN G + +S P + T+D Sbjct: 243 -------------------------------LSLDGLFTAMENEGNGRVVSRPTLLTLDR 271 Query: 43113 KEATIGQGISIPFSQTSASGVNTT-FVEAKLELKVTPHVTADGSILLKIKATNNAPNSSL 43289 + A++ +G +P+ Q++ G + F A L L+V P ++ D SI++++ + ++PN S Sbjct: 272 QSASVLRGTELPYQQSAGDGATSVAFKHAALSLEVKPVISPDNSIVIEVLVSRDSPNFS- 330 Query: 43290 TGSNGQPSISKREAETEVLVKDGETTVIGGIYTRSTASKTAAVPFLSKIPLLGFFFRSDT 43469 +G P I T + V G+T V+GG+Y+ ++ V +S+IP +G F+ Sbjct: 331 NAIDGVPPIDTNRLVTTIRVPHGQTVVLGGVYSTINQQGSSRVSGISRIPGIGRLFKKKE 390 Query: 43470 NTDDHTELLIFITPRIL 43520 + + ELLIF+TPRIL Sbjct: 391 HVTEQYELLIFLTPRIL 407 >ref|NP_039614.1|gene IV product Length = 428 Score = 90.9 bits (224), Expect = 1e-17 Identities = 102/435 (23%), Positives = 178/435 (40%), Gaps = 32/435 (7%) Frame = +3 Query: 42312 IRNLLRLIADVSKKNIVVADDVSGKVTV---SLRNVPWDQALDLVLRSKGLGKEEMGNVI 42482 +R+ ++ + + K+++V DV G +TV + N D VL + GL GN Sbjct: 32 VRSFVQWYSSKTGKSVIVNPDVKGNITVFNADVNNANIDDFFKSVLNANGL-VVVAGNPA 90 Query: 42483 RIXXXXXXXXXXXXXXXXXXXR-------------IPLIP--LKVRIIPVNYARANDVAS 42617 + P +P L VR V R++DV Sbjct: 91 VVSTPLTKLASQPSNEETYDDESDGVAYEAVPQSAAPAVPADLTVRNFNVTRVRSSDVLP 150 Query: 42618 RVKDVLSERG--SVSTDERTNVLIVKDIPEALVRAEGLVRNLDTEIPQVLIESRIVEASS 42791 K + G +V N L+V + + + ++D QVLI+S + E S Sbjct: 151 LAKIFVDSNGGGNVVDYPGNNSLVVSGSAQVMPALSDFITSIDVAREQVLIQSLMFETS- 209 Query: 42792 NFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSXXXXXXXXXXXXTSATPNYAVNLPXXX 42971 V G + SF A + VA N S ++A ++ + Sbjct: 210 -------VSNGVDLSFALALASGGKVAGGFNTSALGTAL------STAGGSFGI------ 250 Query: 42972 XXXXXXXXXXXXXXXXXAFNLN---LRLSALENNGVVKTISSPKIATIDNKEATIGQGIS 43142 FN N L L A++++ K IS+P+I T + I G + Sbjct: 251 ------------------FNGNILALSLQAVQSDSNSKVISTPRILTQSGQSGYISVGQN 292 Query: 43143 IPFSQTSASG----VNTTFV-----EAKLELKVTPHVTADGSILLKIKATNNAPNSSLTG 43295 +PF +G VN F + + LKVTP V +G ++L I ++ ++ Sbjct: 293 VPFVTGKVTGEAASVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLSNQAIA 352 Query: 43296 SNGQPSISKREAETEVLVKDGETTVIGGIYTRSTASKTAAVPFLSKIPLLGFFFRSDTNT 43475 S+ ++R+ +T V +KDG+T ++GG+ + + +VPF+SKIPL+G+ FRS +++ Sbjct: 353 SD--IITNQRQIQTTVQIKDGQTLLLGGLISSNQFDSDRSVPFMSKIPLIGWLFRSHSDS 410 Query: 43476 DDHTELLIFITPRIL 43520 D + + +T ++ Sbjct: 411 KDDRTMFVLLTAHVI 425 >ref|NP_510894.1|phage assembly protein Length = 426 Score = 86.3 bits (212), Expect = 3e-16 Identities = 83/328 (25%), Positives = 143/328 (43%), Gaps = 16/328 (4%) Frame = +3 Query: 42585 VNYARAND----VASRVKDVLSERGSVSTDERTNVLIVKDIPEALVRAEGLVRNLDTEIP 42752 +N RA D V VK S+ +V + + +N+L+V + L + +D Sbjct: 137 INNVRAKDLIRVVELFVKSNTSKSSNVLSIDGSNLLVVSAPKDILDNLPQFLSTVDLPTD 196 Query: 42753 QVLIESRIVEASSNFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSXXXXXXXXXXXXTS 42932 Q+LIE I E VQ G F+ A G+ G V+ +S Sbjct: 197 QILIEGLIFE----------VQQGDALDFSFAAGSQRGT-----VAGGVNTDRLTSVLSS 241 Query: 42933 ATPNYAVNLPXXXXXXXXXXXXXXXXXXXXAFN---LNLRLSALENNGVVKTISSPKIAT 43103 A ++ + FN L L + AL+ N K +S P+I T Sbjct: 242 AGGSFGI------------------------FNGDVLGLSVRALKTNSHSKILSVPRILT 277 Query: 43104 IDNKEATIGQGISIPFSQTSASG----VNTTFVEAK-----LELKVTPHVTADGSILLKI 43256 + ++ +I G ++PF +G VN F + + + V P A G+I+L I Sbjct: 278 LSGQKGSISVGQNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDI 337 Query: 43257 KATNNAPNSSLTGSNGQPSISKREAETEVLVKDGETTVIGGIYTRSTASKTAAVPFLSKI 43436 + ++ +SS S+ ++R T V ++DG+T ++GG+ S+ + VPFLSKI Sbjct: 338 TSKADSLSSSTQASD--VITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKI 395 Query: 43437 PLLGFFFRSDTNTDDHTELLIFITPRIL 43520 PL+G F S +++++ + L + + I+ Sbjct: 396 PLIGLLFSSRSDSNEESTLYVLVKATIV 423 >ref|NP_040579.1|G IV protein Length = 437 Score = 82.8 bits (203), Expect = 3e-15 Identities = 48/172 (27%), Positives = 91/172 (52%), Gaps = 9/172 (5%) Frame = +3 Query: 43032 LNLRLSALENNGVVKTISSPKIATIDNKEATIGQGISIPFSQTSASG----VNTTFV--- 43190 L L + A++N+ K IS+P+I T + I G ++PF +G VN F Sbjct: 265 LALSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQNVPFVTGKVTGEAANVNNPFQTIE 324 Query: 43191 --EAKLELKVTPHVTADGSILLKIKATNNAPNSSLTGSNGQPSISKREAETEVLVKDGET 43364 + + LKVTP V +G ++L I ++ S +T S+ ++R +T V +KDG+T Sbjct: 325 RRDVGVSLKVTPVVMGNGQLVLTIDTKADSLTSQMTASD--IITNQRHMQTTVQIKDGQT 382 Query: 43365 TVIGGIYTRSTASKTAAVPFLSKIPLLGFFFRSDTNTDDHTELLIFITPRIL 43520 ++GG+ +T +VP+ +P++G+ FRS +++ + + + +T ++ Sbjct: 383 LLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNERTMFVLLTAHVI 434 >ref|NP_047372.1|putative maturation protein Length = 500 Score = 79.3 bits (194), Expect = 3e-14 Identities = 80/303 (26%), Positives = 122/303 (40%), Gaps = 8/303 (2%) Frame = +3 Query: 42621 VKDVLSERGSVSTDERTNVLIVKDIPEALVRAEGLVRNLDTEIPQVLIESRIVEASSNFN 42800 VKD + SV TN LIV + L + + L+ +D Q+ IE+ I E N Sbjct: 180 VKDKQVDNYSVEILPNTNALIVSGTAQQLEKLDVLLSAIDVPQRQIFIEAVITETELGDN 239 Query: 42801 RQLGVQWGGNASFTQATGNPTGVAFPNNVSXXXXXXXXXXXXTSATPNYAVNLPXXXXXX 42980 +LGV A+F +A F N+ S Sbjct: 240 SELGVNL--QAAFDKA-------GFVTNLVNASKLKDNLFIFESG--------------- 275 Query: 42981 XXXXXXXXXXXXXXAFNLNLRLSALENNGVVKTISSPKIATIDNKEATIGQGISIPF--- 43151 + N + A+ + + +S P I +D + I G ++PF Sbjct: 276 ----------------DFNALVKAISGSSDTRLLSRPNILIMDRERGYITVGQNVPFLVS 319 Query: 43152 SQTSASGVNTTFVEAK---LELKVTPHVTADGSILLKIKATNNAPNSSLTGSNGQPSI-- 43316 + T+ G + +E K + L+VTPHV D IL+ N +SS+T S I Sbjct: 320 NSTTDGGTSVQRIERKDVGVSLEVTPHVMGDDVILVI-----NQESSSVTDSTIAADIIT 374 Query: 43317 SKREAETEVLVKDGETTVIGGIYTRSTASKTAAVPFLSKIPLLGFFFRSDTNTDDHTELL 43496 +KR T V VK G+T V+GG+ + + + VP L PL+G FRS + + EL Sbjct: 375 NKRTLMTTVAVKSGQTIVLGGLISDEKRNVESGVPVLKDTPLIGGLFRSTSTKNVQKELR 434 Query: 43497 IFI 43505 + I Sbjct: 435 VVI 437 >ref|NP_047359.1|maturation protein Length = 429 Score = 78.6 bits (192), Expect = 6e-14 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 9/173 (5%) Frame = +3 Query: 43032 LNLRLSALENNGVVKTISSPKIATIDNKEATIGQGISIPFSQTSASG----VNTTFV--- 43190 L L L ALE + +S P+I T+ + T G ++PF +G VN F Sbjct: 257 LGLSLKALETSSKSTLLSMPRILTMSGQPGTFTAGQNVPFVTGRVTGEAANVNNPFQTIE 316 Query: 43191 --EAKLELKVTPHVTADGSILLKIKATNNAPNSSLTGSNGQPSISKREAETEVLVKDGET 43364 + + LKV P VT G +++ + ++ + S T S+ + R T V +K G+T Sbjct: 317 RHDVGISLKVVPVVTPGGLLIMDVSTNADSISDSQTASD--IITNTRSISTTVQLKSGQT 374 Query: 43365 TVIGGIYTRSTASKTAAVPFLSKIPLLGFFFRSDTNTDDHTELLIFITPRILN 43523 ++GG+ + ++VP++SKIPL+G F S ++ + L I I R++N Sbjct: 375 VLLGGMVDNRESDSDSSVPWVSKIPLIGALFTSKSSNANKRTLYILIRARVVN 427 >ref|YP_164047.1|putative transposase B subunit Length = 390 Score = 50.1 bits (118), Expect = 2e-05 Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 17/222 (7%) Frame = +2 Query: 50258 YELAQEPFSNAPVSRFYYSSAQHAQALLRLNHAVSAMKGLAVLVGDIGAGKTTLARRML- 50434 +++ ++PF + Y S + H V+ G +VG+ GAGK+TL R ++ Sbjct: 112 FDIRRDPFEELQSADDMYVSPDIRYVREAMYH-VARHDGFLAVVGESGAGKSTLRRDLVH 170 Query: 50435 ----DSLPEDEYEAALLVIVHSGITPSWLL------KRIALQLGVESPAEEKLALLAQLY 50584 ++ P E +L + S L +A +E P A AQL+ Sbjct: 171 RLNTENAPVIPIEPYVLAMEDSDTKGKTLRVTHIAEAMMAAVAPLERPKSSPEARFAQLH 230 Query: 50585 QRLVRIYESGKKAVVLIDEAQMLASREIMEEFRGLLNLEVPERKLLSFVFFGLPEIEDNL 50764 + L + +G K V++I+EA L ++ + L LE KL+S + G PE+ Sbjct: 231 RALKVSHAAGFKHVLIIEEAHSLPI-ATLKHLKRLRELEDGFTKLVSIILIGQPEL--GT 287 Query: 50765 RLDP------PLAQRVALKYRLEPLSAEATEAYVRHRLRLAG 50872 +L P + QR+ + LE + A E ++ R AG Sbjct: 288 KLSPRNGDVREVVQRIEI-VELESIPVAAVEKHLEFRFGRAG 328 >ref|YP_024681.1|gp08 Length = 404 Score = 43.1 bits (100), Expect = 0.003 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 14/176 (7%) Frame = +2 Query: 50372 GLAVLVGDIGAGKTTLARRMLDSLPEDEYEAALL----VIVHSGITPSWLLKR------- 50518 GL +V + G GKTTL R + D + + + ++ + + LK Sbjct: 158 GLLAVVAESGGGKTTLMRDLEDRVMRESHPIIVIKPYVLAMEDNDQKGKTLKATHIAEAI 217 Query: 50519 IALQLGVESPAEEKLALLAQLYQRLVRIYESGKKAVVLIDEAQMLASREIMEEFRGLLNL 50698 +A +E A AQL++ L + +G + ++IDEA L ++ + L Sbjct: 218 MAAVAPLEKVKSSPEARFAQLHKALKESHAAGYQHCLVIDEAHALPI-ATLKHLKRFFEL 276 Query: 50699 EVPERKLLSFVFFGLPEIEDNLRLDPPLAQRVALK---YRLEPLSAEATEAYVRHR 50857 E+ +KLLS + G PE++ L + V + L PL + Y+R + Sbjct: 277 EMGFKKLLSIILIGQPELKVKLSERNQDVREVVQRCEMVELAPLDGPRLDEYLRFK 332 >ref|NP_945044.1|gp14 Length = 1354 Score = 40.4 bits (93), Expect = 0.017 Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 6/203 (2%) Frame = +1 Query: 3511 EATHAAKEASDGNKRMAAEGEQLGGNAMTSVSGILSGIQETSDAARVIHLATQ------Q 3672 EA AA + G++ AA Q A S L+G++ ++ + T + Sbjct: 342 EAAQAALAKAQGDRAAAAAKLQNAQAAEASAQAELAGMRAMRESLAMQSALTAGSIKYTE 401 Query: 3673 QRTATEQVVQSMSEIEEVTRQAQTGSKQATGAASELTKLAERLAELVKRFKVE*PRGAPP 3852 + A + V++ ++ T +A Q GA T A +A + E R Sbjct: 402 AKLAEARAVEATAQAHVATARANVAGSQEIGARITGTPYAAIIARETAAAQQELERAE-- 459 Query: 3853 TAAAMGISEEIRQKLLPRFRETTADRVEKISAALLEIERGAATPEVREELARELHTLKGE 4032 A++ ++++ R L ++ T D+ + +A+L E +RG A E LA + Sbjct: 460 --ASLALAQQRRTALEAAAKQGTIDKA-RYTASLAETDRGLAQAERDVALATQARERAER 516 Query: 4033 ARMMGFAGISTVVHAAEDLLKAL 4101 A AG+ T +A AL Sbjct: 517 AATATAAGLKTATESAATAQTAL 539 >ref|NP_056720.1|putative DNA binding protein Length = 167 Score = 39.7 bits (91), Expect = 0.030 Identities = 18/34 (52%), Positives = 24/34 (70%) Frame = +1 Query: 37801 NNVQRLREEQLLTKAELARKAGVSPLTVTRIEHG 37902 N + LRE + +T+ ELA K GVS LTV ++EHG Sbjct: 2 NRLYLLRESRKITRVELAEKIGVSKLTVLKLEHG 35 >ref|YP_003907.1|putative tail tape measure protein Length = 957 Score = 39.3 bits (90), Expect = 0.039 Identities = 69/356 (19%), Positives = 134/356 (37%), Gaps = 13/356 (3%) Frame = +1 Query: 2803 EQLDTSRHRVQVVTAGVDEAIEAMIRLVIQGDLSGTLRLGVSDAALTPLIAGIGQVMETL 2982 EQL R + V +D + M RL I +L +G++++ Sbjct: 57 EQLRRQRKEYEAVEKAIDPTVSKMERLKIASQQLD--KLWQQGVVPDETFFRLGEMLDLQ 114 Query: 2983 -------KRFVTEIREAALQLSTSSAEVLAAATQNESSTSAQASAIHETTATMEELKGAS 3141 + +TE +AALQ + + + + + + Q +AI +T A + ELK A Sbjct: 115 NAKLARSRAMLTEEGQAALQEAKAKEQAAVRSKAFMDALNGQVNAIGKTHAELMELKAAE 174 Query: 3142 HQIA-ENAQMVAAIAEQTLTGAKQGEGAIKSFMSSMEKVRHNAVEVDDAIAKLSKRVERI 3318 ++ E A ++A + +Q G I S + +R ++ D + L+ + Sbjct: 175 LGLSKEAAPLIAKLKDQ---GRAMNAAGI-SAGEYRQAMRMLPAQITDVVTSLASGMPVW 230 Query: 3319 GTVVEVIDEIADRSDXXXXXXXXXXXXXXXXXXXFSIVAAEMRRLAENVLESTKEIKNLI 3498 ++ +I D ++ + LA+ +S K I ++ Sbjct: 231 MVAIQQGGQIKDSFGGIGNTFKVLLSYINPVTAGVGVLVGSLGILAKAGYDSYKSITDIQ 290 Query: 3499 TEIRE----ATHAAKEASDGNKRMAAEGEQLGGNAMTSVSGILSGIQETSDAARVIHLAT 3666 + E A A+E +K++A G+ V+ + S + T + + I AT Sbjct: 291 NALIETGGYAGVTAEELDSVSKKIAQTSNSTIGSIREIVTELASSGKYTREQIQNITKAT 350 Query: 3667 QQQRTAT-EQVVQSMSEIEEVTRQAQTGSKQATGAASELTKLAERLAELVKRFKVE 3831 + +T + Q +SE E++ G K+ + L K + + R K E Sbjct: 351 AEWSASTGKSASQIISEFEKIASDPVKGLKKLNEQYNFLEKGQLTYIDTLSRTKGE 406 >ref|NP_046572.1|ABC transporter Length = 705 Score = 38.9 bits (89), Expect = 0.051 Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 16/172 (9%) Frame = +2 Query: 33308 VGPNGAGKTTTIKMLMGLIYPSSGRAFIFDDPIPSR----RAKARIGYLPEHPAYYEFLT 33475 +G +G GK+T K L L Y ++ + +R + RI Y+ E+P ++ T Sbjct: 515 IGESGTGKSTFAKSLSKL-YKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKG-T 572 Query: 33476 GREAL---RFFARLSEVPGAARDRRCDELLELVGLTAAADRQIR--------KYSKGMQQ 33622 +E L F + +E+ A +C E + D+Q S G +Q Sbjct: 573 IKENLCMGEIFDQ-NEIENACIMSQCHEFI------CNLDKQYSYKLSENGSNLSTGQKQ 625 Query: 33623 RLGIAQALVGDPALVVLDEPMSGLDPVGRKDVRDLILE-LKRRGKTVFFSTH 33775 RL +A+A++ P +++LDE +S +DP D LI E L R + TH Sbjct: 626 RLALARAILHQPQVLILDESLSNIDP----DNTKLIYETLHRMDCLIILITH 673 Score = 37.0 bits (84), Expect = 0.19 Identities = 17/41 (41%), Positives = 26/41 (63%) Frame = +1 Query: 36625 SEPMREVSRQIRKIAQQKTTVLVQGESGTGKELVARAIHQL 36747 ++PMR + I I +K VL+ GESGTGK A+++ +L Sbjct: 492 ADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKL 532 >ref|NP_938251.1|putative tail component protein Length = 514 Score = 38.5 bits (88), Expect = 0.066 Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 13/192 (6%) Frame = +1 Query: 3574 QLGGNAMTSVSGILSGIQETSD--AARVIHL--ATQQQRTATEQVVQSMSEIEEVTRQAQ 3741 Q G+ + LSG+ ET+D AAR+ + A+ QQR A + + +S + TR A Sbjct: 31 QAAGDHASQAGRELSGLGETADQQAARIKAMVAASLQQREALDALAESSDRMNTATRAAT 90 Query: 3742 TG---SKQATGAASELTKLAERLAELVKRFKVE*PRGAPPTAAAMGISEEIRQKLLPRFR 3912 +G S +A A+ AER E + A A + KLL Sbjct: 91 SGWQESARAQSASMNAYHNAERAREQQVAAEQRAAEAAAKATAEFDRQQAELGKLLAAID 150 Query: 3913 ETT--ADRVEKISAALLEIERGAATPEV----REELARELHTLKGEARMMGFAGISTVVH 4074 T ++++ + A L P+V +L + L G + M AGIS + Sbjct: 151 PVTRELEKLDSLQARLNAARGRGIDPDVFTTYNAKLQEQRDRLLGTSDAMAVAGISAGQY 210 Query: 4075 AAEDLLKALPAE 4110 ++ LPA+ Sbjct: 211 --RQAMRQLPAQ 220 >ref|NP_597807.1|DNA binding protein Length = 170 Score = 37.7 bits (86), Expect = 0.11 Identities = 18/34 (52%), Positives = 23/34 (67%) Frame = +1 Query: 37801 NNVQRLREEQLLTKAELARKAGVSPLTVTRIEHG 37902 N + LRE + +T+ ELA K GVS LTV + EHG Sbjct: 2 NRLYLLRESRKITRVELAEKIGVSKLTVLKWEHG 35 >ref|NP_899326.1|gp44 Length = 318 Score = 37.4 bits (85), Expect = 0.15 Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 4/142 (2%) Frame = +2 Query: 19541 EEVRALVEKLA---RTRTTVLISGESGTGKEVVARAIHARAGHRQPFVAINCGAIPEGLI 19711 E VR L +K+ + +L S GTGK VARA+ A G+ FV + + GL+ Sbjct: 28 ERVRKLFQKMVDDNQIPNMLLCSSSPGTGKTTVARAVLADMGYEVLFVNAS-SSRGIGLV 86 Query: 19712 ESELFGH-QKGSFTGATEAKAGLFEVAGAGTLFLDEVGELPPPVQVKLLRALQERKIRRV 19888 +++L SF+G +A + LDE L P Q K LR L E+ + V Sbjct: 87 QNDLPAFCSTVSFSGNPKA------------VILDEADNLTPDAQ-KALRGLIEQYSKNV 133 Query: 19889 GGSADLGFSARIVAATNRDLAE 19954 ++ +I+ L E Sbjct: 134 RFVLTCNYAQKILTPIRSRLQE 155 >ref|NP_049430.1|Hypothetical protein Length = 165 Score = 35.8 bits (81), Expect = 0.43 Identities = 16/34 (47%), Positives = 23/34 (67%) Frame = +1 Query: 37801 NNVQRLREEQLLTKAELARKAGVSPLTVTRIEHG 37902 N ++ LRE + +T+ ELA K GV+ LT+ EHG Sbjct: 2 NRLKELRELRKITRVELAEKIGVTKLTILNWEHG 35 >ref|YP_164086.1|tail length tape measure protein Length = 1099 Score = 35.8 bits (81), Expect = 0.43 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 18/177 (10%) Frame = +1 Query: 3625 QETSDAARVIHLATQQQRTATEQVVQSMSEIEEVTRQAQ-----TGSKQATGAASELTKL 3789 Q DA + L R + V + +EIE+ Q TG + G S+L + Sbjct: 658 QAKKDATTLKQLNLDYLRATGQTVEAAGAEIEKKYGDLQKRLLATGDTEGAGLVSKLMGI 717 Query: 3790 AERLAEL------VKRFKVE*PRGAPPTAAAM--GISEEI--RQKLLPRFRETTADRVEK 3939 + AEL V R E R AA G+ E+ RQ+LL R +TAD+VE+ Sbjct: 718 EKAKAELQQLQDQVDRIFGEQSRQESSIQAAQQAGLVSELAARQQLLDLHR-STADQVEQ 776 Query: 3940 ISAALLEIERGAATPEVRE---ELARELHTLKGEARMMGFAGISTVVHAAEDLLKAL 4101 + + E+ + P E +L ++L + A + A S + + +D L+ L Sbjct: 777 LVPRMEELAKATGDPAAIERVKDLRQQLDNTRLAADQLTLALRSGIENGMQDALRGL 833 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 146,427,187 Number of Sequences: 14420 Number of extensions: 2660024 Number of successful extensions: 12215 Number of sequences better than 0.5: 17 Number of HSP's better than 0.5 without gapping: 5701 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12158 length of database: 3,019,461 effective HSP length: 117 effective length of database: 1,332,321 effective search space used: 23296965006 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig67 (57,591 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817650.1|gp61 52 8e-06 ref|NP_720276.1|GtrB 50 2e-05 ref|YP_006358.1|GtrB 50 2e-05 ref|NP_059582.1|O-antigen conversion protein 50 2e-05 ref|NP_046877.1|putative non-heme haloperoxidase 49 7e-05 ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase 48 9e-05 ref|NP_599056.1|bactoprenol glucosyltransferase 47 3e-04 ref|NP_958267.1|hypothetical protein 42 0.009 ref|NP_795616.1|putative helicase 41 0.015 ref|NP_795446.1|putative DEAD box family helicase 41 0.015 ref|NP_944303.1|conserved phage mega protein 39 0.072 ref|YP_024499.1|putative helicase 37 0.27 ref|NP_445672.1|putative helicase 36 0.36 >ref|NP_817650.1|gp61 Length = 274 Score = 51.6 bits (122), Expect = 8e-06 Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 5/219 (2%) Frame = +3 Query: 24468 GRTVLLLHGKNFHAGTWAETIAALNRAGFRVIAPDQIGFGKSSKPERYQFSFAQLAANTR 24647 G ++ LHG A + E + L + GF V A D + G++ + + ++ T Sbjct: 24 GVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLP-FGHTVEEMTRVTL 82 Query: 24648 ALLASLGVERTAVVGHSMGGMLAVRYALEYPEATERLLLVNPIGLEDYAAFL--PPRTVD 24821 L +LG+++ VGHSMGG + A YPE +L++ +++ A L P R Sbjct: 83 RALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILLDAAAGKEHHANLKDPLRATQ 142 Query: 24822 QWYAQELKQTPDSVRSYQRQAYYDGAWKPEYEAHTRLLAGWTLHPGWPRVAWDSALTYDM 25001 + + D+ ++ + ++ +G + + AG+ + R A+ + L D Sbjct: 143 RLSGAVVDVLGDTYQAIKLRSATEGLGLAQTLRSS--FAGFR----FVRAAY-ALLKAD- 194 Query: 25002 IVTQPVVHELERLAVPTRLVIGLRDRT---AIGRPLAPA 25109 T+P++ ++ L V T ++ GL D+ A G+ A A Sbjct: 195 --TEPLLKAMKALDVQTAVIHGLSDQIVPFAAGKSAAEA 231 >ref|NP_720276.1|GtrB Length = 325 Score = 50.1 bits (118), Expect = 2e-05 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 3/127 (2%) Frame = -2 Query: 5366 VTVLIPSYNEGENAE---ETVSHALALDYPDFEVVAINDGSSDDTGAVLERVAARDPRLR 5196 +++++P +NE + +TV L + E+V INDGS D T +++ ++AA DP + Sbjct: 18 ISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPLVI 77 Query: 5195 VVHLAENQGKAMGLQAGALLARHEILVCIDGDALLDPNAAHWLVRHFVESPDVAAVTGNP 5016 + N GK L AG A + ++ ID D L DP ++ H +E A Sbjct: 78 PLSFTRNFGKEPALFAGLDHATGDAVIPIDVD-LQDPIE---VIPHLIEKWQAGADMVLA 133 Query: 5015 RIRNRST 4995 + +RST Sbjct: 134 KRSDRST 140 >ref|YP_006358.1|GtrB Length = 310 Score = 50.1 bits (118), Expect = 2e-05 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 3/127 (2%) Frame = -2 Query: 5366 VTVLIPSYNEGENAE---ETVSHALALDYPDFEVVAINDGSSDDTGAVLERVAARDPRLR 5196 +++++P +NE + +TV L + E+V INDGS D T +++ ++AA DP + Sbjct: 3 ISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPLVI 62 Query: 5195 VVHLAENQGKAMGLQAGALLARHEILVCIDGDALLDPNAAHWLVRHFVESPDVAAVTGNP 5016 + N GK L AG A + ++ ID D L DP ++ H +E A Sbjct: 63 PLSFTRNFGKEPALFAGLDHATGDAVIPIDVD-LQDPIE---VIPHLIEKWQAGADMVLA 118 Query: 5015 RIRNRST 4995 + +RST Sbjct: 119 KRSDRST 125 >ref|NP_059582.1|O-antigen conversion protein Length = 310 Score = 50.1 bits (118), Expect = 2e-05 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 3/127 (2%) Frame = -2 Query: 5366 VTVLIPSYNEGENAE---ETVSHALALDYPDFEVVAINDGSSDDTGAVLERVAARDPRLR 5196 +++++P +NE + +TV L + E+V INDGS D T +++ ++AA DP + Sbjct: 3 ISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPLVI 62 Query: 5195 VVHLAENQGKAMGLQAGALLARHEILVCIDGDALLDPNAAHWLVRHFVESPDVAAVTGNP 5016 + N GK L AG A + ++ ID D L DP ++ H +E A Sbjct: 63 PLSFTRNFGKEPALFAGLDHATGDAVIPIDVD-LQDPIE---VIPHLIEKWQAGADMVLA 118 Query: 5015 RIRNRST 4995 + +RST Sbjct: 119 KRSDRST 125 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 48.5 bits (114), Expect = 7e-05 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 1/102 (0%) Frame = +3 Query: 24468 GRTVLLLHGKNFHAGTWAETIAALNRAGFRVIAPDQIGFGKS-SKPERYQFSFAQLAANT 24644 G ++ LHG + A + E + L GFRVIA D G+S S P + + + T Sbjct: 22 GAPLVFLHGLSVSAKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTGH--TVEDMTRVT 79 Query: 24645 RALLASLGVERTAVVGHSMGGMLAVRYALEYPEATERLLLVN 24770 L L + R GHSMGG + V A +P +L++ Sbjct: 80 LKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLD 121 >ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase Length = 327 Score = 48.1 bits (113), Expect = 9e-05 Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 10/176 (5%) Frame = -2 Query: 5366 VTVLIPSYNEGENAEETVSHAL--ALDYPDFEVVAINDGSSDDTGAVLERVAARDPRLRV 5193 V+V++P++N GE T+S L + D+E++ I+D S+D G L + +R Sbjct: 4 VSVIMPTFNNGEKLHRTISSVLNQTMKSTDYELIIIDD-HSNDNGETLNVIKKYKGLVRF 62 Query: 5192 VHLAENQGKA-MGLQAGALLARHEILVCIDGDALLDPNAAHWLVRHFVESPDVAAVTGNP 5016 L +N G A + G +++ E + +D D LL A L + E+ Sbjct: 63 KQLKKNSGNASVPRNTGLKMSKAEYVFFLDSDDLLHERALEDLYNYGKEN---------- 112 Query: 5015 RIRNRSTLLGRVQV-GEFSSI------VGIIKRAQRVFGRIFTVSGVITAFRKSAV 4869 N ++G+ V G+ S+ G + +A + IF V+ F+KS + Sbjct: 113 ---NSDLIIGKYGVEGKGRSVPKAIFEKGNVAKADIIDNSIFYALSVLKMFKKSVI 165 >ref|NP_599056.1|bactoprenol glucosyltransferase Length = 307 Score = 46.6 bits (109), Expect = 3e-04 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 3/127 (2%) Frame = -2 Query: 5366 VTVLIPSYNEGENAE---ETVSHALALDYPDFEVVAINDGSSDDTGAVLERVAARDPRLR 5196 +++++P +NE E +TV L + E+V INDGS D T +++ +A DP + Sbjct: 3 ISLVVPVFNEEEAIPVFYKTVREFQELKPYEVEIVFINDGSKDATESIINALAVSDPLVV 62 Query: 5195 VVHLAENQGKAMGLQAGALLARHEILVCIDGDALLDPNAAHWLVRHFVESPDVAAVTGNP 5016 + N GK L AG A + ++ ID D L DP ++ H +E A Sbjct: 63 PLSFTRNFGKEPALFAGLDHASGDAVIPIDVD-LQDPIE---VIPHLIEKWQAGADMVLA 118 Query: 5015 RIRNRST 4995 + +RST Sbjct: 119 KRSDRST 125 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 41.6 bits (96), Expect = 0.009 Identities = 55/196 (28%), Positives = 68/196 (34%), Gaps = 18/196 (9%) Frame = -2 Query: 29540 RGDRAAVQLDQPLHEREPQPQAAAGPRQRPLGLHERLE-QPLQHLGRHADPVVAHADPGP 29364 R D ++ +P H R P P+ A PR H R+ +P HLG D H +P Sbjct: 2 RFDARRLRRARPPHTRTPAPRTRAHPRA-----HRRVRTRPHPHLGPARDRSPDHPEPDH 56 Query: 29363 PLRRGVHRD-----RHGPAA-----------VGELGRVVHQVAHDLRDARRVGVDPQLAP 29232 P RR R RH P A + G VH A A P+ AP Sbjct: 57 PCRRAPSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAA--PEYAP 114 Query: 29231 GHLQRQPDAARLEQRAVVLRGLAHRRAQLQVRPAQLDLPLRDARHVEQVVHQAGQVRDLA 29052 R P+ RG H R + R +PL V V + R Sbjct: 115 ALRPRAPECD---------RGAHHLRTRAP-RTRTRAVPLGPGARVRTPVEDRRRTRRRR 164 Query: 29051 R-DDLARVPPLLAGGV 29007 R D RV P L GV Sbjct: 165 RPDPRRRVQPRLGVGV 180 >ref|NP_795616.1|putative helicase Length = 409 Score = 40.8 bits (94), Expect = 0.015 Identities = 17/66 (25%), Positives = 37/66 (56%) Frame = +3 Query: 43317 LVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYRVLVATDIAARG 43496 +V+T + + V+ +AG++ + +++R A++ FRDG+ R+LV ++ G Sbjct: 179 IVYTHSVEASHLVSDMFNQAGYQSQSVSGKTPKSEREEAMQAFRDGKLRILVNCELFTEG 238 Query: 43497 IDVAEI 43514 ID+ + Sbjct: 239 IDLPNV 244 >ref|NP_795446.1|putative DEAD box family helicase Length = 409 Score = 40.8 bits (94), Expect = 0.015 Identities = 17/66 (25%), Positives = 37/66 (56%) Frame = +3 Query: 43317 LVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYRVLVATDIAARG 43496 +V+T + + V+ +AG++ + +++R A++ FRDG+ R+LV ++ G Sbjct: 179 IVYTHSVEASHLVSDMFNQAGYQSQSVSGKTPKSEREEAMQAFRDGKLRILVNCELFTEG 238 Query: 43497 IDVAEI 43514 ID+ + Sbjct: 239 IDLPNV 244 >ref|NP_944303.1|conserved phage mega protein Length = 4602 Score = 38.5 bits (88), Expect = 0.072 Identities = 44/162 (27%), Positives = 58/162 (35%), Gaps = 15/162 (9%) Frame = -3 Query: 625 ERERDGDP-PHQVVAAGRDVDPPAQPAAQERADLVEEEDHPAQHGQVPGAE---ERRDGA 458 +R +G P P + V A R +P A PAAQ+ A G A R+G Sbjct: 787 DRRNEGAPAPAEPVTAARIEEPAAAPAAQDEAPATTASGAFVDRGDANRAAISAAEREGR 846 Query: 457 V-----RERHGR-----EPQEAHGRAERVRRALXXXXXXXXXXXXRAEQVEPHQQARLAR 308 V RE GR +PQEA V A++ +QAR Sbjct: 847 VHVVVPREEDGRTVFDIKPQEAANAGTAVS----------------ADRTGADEQARAPV 890 Query: 307 APAEQPGAVRPADVEQLHQREDGGRRARPEPA-VARTRAGGW 185 P +P A +P + G A +PA V AG W Sbjct: 891 QPQPEPAAAQPGSASASAEPVAGNVAAEQQPAPVKDAYAGKW 932 >ref|YP_024499.1|putative helicase Length = 582 Score = 36.6 bits (83), Expect = 0.27 Identities = 21/96 (21%), Positives = 41/96 (42%) Frame = +3 Query: 43299 DDDLSTLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYRVLVAT 43478 + D TL+ D +++ L + +H + RR L R G+ +V++AT Sbjct: 443 NQDKGTLIIVNFIEHGDTISEMLNDLDVEHYFLHGEIDSETRREKLNDMRSGKLKVMIAT 502 Query: 43479 DIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTAR 43586 + G+D++ I ++ + R+GR R Sbjct: 503 SLIDEGVDISGINALILGAGGKSLRQTLQRIGRALR 538 >ref|NP_445672.1|putative helicase Length = 601 Score = 36.2 bits (82), Expect = 0.36 Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Frame = +3 Query: 43317 LVFTRTKRRADKVAKALQRA-GHKVARIHADRSQAQRRMALEGFRDGQYRVLVATDIAAR 43493 ++FT T+++A+++ R +KVA HA + LE R G+Y ++V+T ++ Sbjct: 224 MIFTSTRKKAEELYMIYDRKFQNKVAFFHAGLDAETKLRLLEETRQGKYNIIVSTTALSQ 283 Query: 43494 GID 43502 G++ Sbjct: 284 GVN 286 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 157,321,392 Number of Sequences: 14420 Number of extensions: 2875020 Number of successful extensions: 12700 Number of sequences better than 0.5: 13 Number of HSP's better than 0.5 without gapping: 5788 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12672 length of database: 3,019,461 effective HSP length: 117 effective length of database: 1,332,321 effective search space used: 25419352359 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig68 (54,928 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_077209.1|thymidylate synthase 113 2e-24 ref|NP_542556.1|putative phage C31 protein gp16-like protein 80 2e-14 ref|YP_195228.1|thymidilate synthase 61 1e-08 ref|NP_536361.1|putative capsid assembly protein 60 3e-08 ref|YP_006585.1|putative head maturation protease 52 8e-06 ref|NP_892049.1|capsid protein 50 3e-05 ref|NP_570363.1|unknown 49 5e-05 ref|NP_918994.1|putative head-tail preconnector protein 49 5e-05 ref|NP_570377.1|unknown 46 3e-04 ref|NP_040584.1|capsid component 46 3e-04 ref|NP_690787.1|immunity repressor 45 6e-04 ref|NP_046900.1|gp5 44 0.001 ref|NP_817450.1|gp112 44 0.002 ref|NP_046863.1|gp48 43 0.003 ref|NP_047961.1|gp16 43 0.003 ref|NP_039712.1|predicted 27.8Kd protein 42 0.006 ref|NP_852485.1|Transcriptional regulator 42 0.008 ref|NP_818406.1|gp108 40 0.018 ref|YP_025049.1|putative repressor protein 40 0.018 ref|NP_852481.1|Transcriptional regulator, MerR family 40 0.024 ref|NP_536427.1|putative class I holin 39 0.053 ref|NP_536425.1|putative helix-turn-helix transcriptional regulator 39 0.053 ref|NP_945113.1|gp82 39 0.053 ref|NP_945111.1|gp80 39 0.053 ref|NP_958562.1|putative repressor 38 0.090 ref|NP_046617.1|putative SPbeta phage repressor 38 0.090 ref|NP_700411.1|regulatory protein 37 0.15 ref|NP_813723.1|gp7 37 0.15 ref|NP_700429.1|hypothetical protein 37 0.20 ref|NP_720300.1|Cro 37 0.20 ref|NP_944303.1|conserved phage mega protein 37 0.20 ref|NP_958298.1|hypothetical protein 36 0.34 >ref|YP_077209.1|thymidylate synthase Length = 257 Score = 113 bits (283), Expect = 2e-24 Identities = 66/177 (37%), Positives = 96/177 (54%) Frame = -1 Query: 32266 EIRDGSISADRIRDFIGERLKTGHASPLEQVVFWFGISGVSRALSHQFVRHRIGISFEQQ 32087 + + ++ + I +I + + G+ S LE V+ F I G+SR SHQ VRHRI S+ Q Sbjct: 30 DYHEKEMTDEEIETWIRDAILHGYWSVLEHSVYTFSIEGISRVASHQLVRHRIA-SYTQM 88 Query: 32086 SQRYVKYKEERLDYVMPKTWQKVAGMADEYDRLMREITRVYEDALAKGIPAEDARFVLPN 31907 S R+ + +E ++P + +K + + ++ +Y + L GIP EDAR+VLPN Sbjct: 89 SHRFARPIDEYYKPIIPISIKK-RDVHELVNKAYNNAYEIYYELLKSGIPEEDARYVLPN 147 Query: 31906 ATPTNFQVMVNFTELLHIADLRLCWRAQWEIRHMVALMRREVMKAVPEIGGYLQPKC 31736 A TN V +N EL + LRLC RAQWEIR + M EV K P + Y P C Sbjct: 148 AVNTNIVVTMNARELYNFFSLRLCSRAQWEIRAIAWRMLEEVKKVHPRLFRYAGPNC 204 >ref|NP_542556.1|putative phage C31 protein gp16-like protein Length = 234 Score = 80.5 bits (197), Expect = 2e-14 Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 17/169 (10%) Frame = -1 Query: 32221 IGERLKTGHASPLEQVVFWFGISGVSRALSHQFVRHRIGISFEQQSQRYVKYKEERLDYV 32042 +GE L+ GH P E + +F + G+SR+ Q RHR +SF+ QSQRY + ++ + V Sbjct: 51 MGELLRRGHFGPFEHIQAFFAVEGLSRSAMAQVTRHR-HMSFDVQSQRYCDFSDKNI--V 107 Query: 32041 MPKTWQKVAGMAD----EYDRLMREIT-------------RVYEDALAKGIPAEDARFVL 31913 +P +K D +YD + T +YE + +G+ EDARFVL Sbjct: 108 IPPGDKKNPAAEDVVLGQYDGPAEDFTGADALEGHFVNSVELYEKLIEQGMAKEDARFVL 167 Query: 31912 PNATPTNFQVMVNFTELLHIADLRLCWRAQWEIRHMVALMRREVMKAVP 31766 P + N L+H DLR +AQWE R + E + P Sbjct: 168 PIGVEVDMTFSANARTLMHFFDLRKNMKAQWEAREFATKVLEECKEWSP 216 >ref|YP_195228.1|thymidilate synthase Length = 213 Score = 60.8 bits (146), Expect = 1e-08 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 19/142 (13%) Frame = -1 Query: 32209 LKTGHASPLEQVVFWFGISGVSRALSHQFVRHRIGISFEQQSQRYV-------------- 32072 +K GH S EQ I+ SR ++ Q +RHR +F++ SQRY Sbjct: 43 IKHGHWSVFEQAHMTLEIN-TSRGIAAQILRHR-SFTFQEFSQRYAETNLLGYEIPIPDL 100 Query: 32071 -----KYKEERLDYVMPKTWQKVAGMADEYDRLMREITRVYEDALAKGIPAEDARFVLPN 31907 K ++ +D + P+ + G D++ RE +Y + L +G+ E ARFVLP Sbjct: 101 RSQDHKNRQNSVDDISPEKKSVLQGQIDKH---FRESIDLYNELLRQGVAKECARFVLPL 157 Query: 31906 ATPTNFQVMVNFTELLHIADLR 31841 ATPT + N +H DLR Sbjct: 158 ATPTRIYMTGNLRSWMHYIDLR 179 >ref|NP_536361.1|putative capsid assembly protein Length = 301 Score = 59.7 bits (143), Expect = 3e-08 Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 1/178 (0%) Frame = -1 Query: 29683 LRIESGGGDGLASDLIWREAVRARRKGKPVIASMGDLAASGGYLVAVGADAILAERSTLT 29504 L I+S GG + + + +RA KP+ A + A SGGYL+A A ++ R++ Sbjct: 103 LDIDSNGGSATGAFEL-ADDIRAASLVKPITAIVNFSAFSGGYLIAAAASKVIVSRTSGV 161 Query: 29503 GSIGVFAAKPDLSGLLAKLSIHPEAYQRGENARLASVLKPWTAAERAVLEKQISAFYRQF 29324 GSIGV A D+S + I + G++ + +P + L + Y+QF Sbjct: 162 GSIGVIANHLDVSKRDEQQGIKVTSVFAGDHKNDLTPHEPLSDQSLTFLTSMVQNSYKQF 221 Query: 29323 VARVAEGRRLTXXXXXXXXXGRVWTGQQALERRLVDRIGTLADAI-RLARERAGIAAD 29153 V +A R L+ G ++ GQ+ +E L D + T AI R+A E AD Sbjct: 222 VDAIANFRGLSTQAVKDTQAG-IFFGQKGVEAGLADSVETPQAAINRIAAEVRASRAD 278 >ref|YP_006585.1|putative head maturation protease Length = 306 Score = 51.6 bits (122), Expect = 8e-06 Identities = 37/130 (28%), Positives = 58/130 (44%) Frame = -1 Query: 29683 LRIESGGGDGLASDLIWREAVRARRKGKPVIASMGDLAASGGYLVAVGADAILAERSTLT 29504 L I SGGG + + + + R+ KP+ A + A S Y +A I+ +++ Sbjct: 115 LDINSGGGAAVGCKEL-ADYIYQSRETKPITAIVNYNAFSAAYFIASACSKIIVSQTSGV 173 Query: 29503 GSIGVFAAKPDLSGLLAKLSIHPEAYQRGENARLASVLKPWTAAERAVLEKQISAFYRQF 29324 GSIGV D S L K+ + RG+N + +P + +A+ + I Y F Sbjct: 174 GSIGVIMEHLDTSKLEEKMGLTFTTIFRGDNKNNGTQHEPLSEEAQAMFQGMIDEMYETF 233 Query: 29323 VARVAEGRRL 29294 VAE R L Sbjct: 234 TGSVAEYRGL 243 >ref|NP_892049.1|capsid protein Length = 303 Score = 49.7 bits (117), Expect = 3e-05 Identities = 42/159 (26%), Positives = 65/159 (40%) Frame = -1 Query: 29665 GGDGLASDLIWREAVRARRKGKPVIASMGDLAASGGYLVAVGADAILAERSTLTGSIGVF 29486 GG ++ + + A R KP A + A S GY +A I+ ++ GSIGV Sbjct: 117 GGGAVSGCKELADYIFASRSVKPSTAIVNYNAFSAGYFMASACSRIVVSHTSGVGSIGVI 176 Query: 29485 AAKPDLSGLLAKLSIHPEAYQRGENARLASVLKPWTAAERAVLEKQISAFYRQFVARVAE 29306 + S L ++ + + RG+ S +P T A L++ I Y F VAE Sbjct: 177 LEHMEASKLEEQIGLKFTTFYRGDFKNAGSPHEPLTDEATAYLQQLIDDAYETFTTSVAE 236 Query: 29305 GRRLTXXXXXXXXXGRVWTGQQALERRLVDRIGTLADAI 29189 R + R + GQ A++ L D + AI Sbjct: 237 YRGI-DVQRVIDTQARTFFGQAAVDAGLADELSDPQTAI 274 Score = 37.4 bits (85), Expect = 0.15 Identities = 25/86 (29%), Positives = 43/86 (50%) Frame = -1 Query: 30196 RLGIAFDVVKAGAYKSAAEPLVRDAPSPEAREATEAVLDDVFGRFVAQVAEARRLPPERV 30017 ++G+ F G +K+A P + + EA + ++DD + F VAE R + +RV Sbjct: 188 QIGLKFTTFYRGDFKNAGSP--HEPLTDEATAYLQQLIDDAYETFTTSVAEYRGIDVQRV 245 Query: 30016 RALVDQGLFGAEEAKEAGLLDLVAWP 29939 + FG + A +AGL D ++ P Sbjct: 246 IDTQARTFFG-QAAVDAGLADELSDP 270 >ref|NP_570363.1|unknown Length = 235 Score = 48.9 bits (115), Expect = 5e-05 Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 17/165 (10%) Frame = -1 Query: 32242 ADRIRDFIGERLKTGHASPLEQVVFWFGISGVSRALSHQFVRHRIGISFEQQSQRYV--- 32072 ADR+ ++ +K GH SP E I +RA++ Q +RHR SF++ SQRY Sbjct: 59 ADRLIRYL---IKHGHWSPFEMAHMVVEIE-TTRAIAPQILRHR-SFSFQEFSQRYAVAD 113 Query: 32071 --------------KYKEERLDYVMPKTWQKVAGMADEYDRLMREITRVYEDALAKGIPA 31934 K ++ +D + + VA E D + +Y+ L+ G+ Sbjct: 114 LGEFEVPELRRQDTKNRQNSIDDLPAEI---VAEFQSEIDEVFETTRVLYQRMLSYGVAK 170 Query: 31933 EDARFVLPNATPTNFQVMVNFTELLHIADLRLCWRAQWEIRHMVA 31799 E AR +LP TPT + +H LR C E ++A Sbjct: 171 ECARGILPLNTPTKLYMSGTIRSWIHYCQLR-CGNGTQEEHRLIA 214 >ref|NP_918994.1|putative head-tail preconnector protein Length = 355 Score = 48.9 bits (115), Expect = 5e-05 Identities = 40/165 (24%), Positives = 72/165 (43%) Frame = -1 Query: 29683 LRIESGGGDGLASDLIWREAVRARRKGKPVIASMGDLAASGGYLVAVGADAILAERSTLT 29504 L + S GG+ A + + A R KP++A + S Y +A A +++ S Sbjct: 121 LDVNSYGGEA-AGCFELADDIYAARDEKPIMAVIDSNCYSAAYAIASAATKVVSTPSGGA 179 Query: 29503 GSIGVFAAKPDLSGLLAKLSIHPEAYQRGENARLASVLKPWTAAERAVLEKQISAFYRQF 29324 GSIGV A D+S +L + I G++ + + + +A ++ ++A Y +F Sbjct: 180 GSIGVVAMHVDMSEMLDDMGIKITFIHAGDHKVDGNPYEAASKEVKASIQADVNASYDEF 239 Query: 29323 VARVAEGRRLTXXXXXXXXXGRVWTGQQALERRLVDRIGTLADAI 29189 V+ VA R + + + AL L+D + DA+ Sbjct: 240 VSLVARNRGM-DSQKVRDTQAQTYRADDALNLGLIDAVAKPVDAV 283 >ref|NP_570377.1|unknown Length = 92 Score = 46.2 bits (108), Expect = 3e-04 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = +3 Query: 13797 RREVWARDGGRCTFVLPSGETCGSTHRLELDHVVPRARGGAS-TADNLRIRCRGHNLEEA 13973 R + ARDG CT+ CGS L LDH+VPR +GGA A N+ CR N ++ Sbjct: 24 RDNIMARDGYTCTY-------CGSKDNLTLDHIVPRCKGGARWDASNVTTACRRCNQDKG 76 Query: 13974 RRILGD 13991 L + Sbjct: 77 SMSLAE 82 >ref|NP_040584.1|capsid component Length = 439 Score = 46.2 bits (108), Expect = 3e-04 Identities = 37/143 (25%), Positives = 60/143 (41%) Frame = -1 Query: 29602 KPVIASMGDLAASGGYLVAVGADAILAERSTLTGSIGVFAAKPDLSGLLAKLSIHPEAYQ 29423 KPV A D+ S G L+A A L ++ TGSIGV A + L K + Sbjct: 154 KPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIY 213 Query: 29422 RGENARLASVLKPWTAAERAVLEKQISAFYRQFVARVAEGRRLTXXXXXXXXXGRVWTGQ 29243 G + + R L+ ++ A + F +V+ L+ V++GQ Sbjct: 214 SGSHKVDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLS-VQVVLDTEAAVYSGQ 272 Query: 29242 QALERRLVDRIGTLADAIRLARE 29174 +A++ L D + DAI + R+ Sbjct: 273 EAIDAGLADELVNSTDAITVMRD 295 >ref|NP_690787.1|immunity repressor Length = 144 Score = 45.4 bits (106), Expect = 6e-04 Identities = 20/56 (35%), Positives = 39/56 (69%) Frame = -2 Query: 40239 VRRLRSKKNLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVPPAALL 40072 ++ +R ++ L+Q LA+K +S SY++ +ER + +P L T+E +A ALG+ +A++ Sbjct: 7 IKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSAIV 62 >ref|NP_046900.1|gp5 Length = 447 Score = 44.3 bits (103), Expect = 0.001 Identities = 35/152 (23%), Positives = 64/152 (42%) Frame = -1 Query: 29629 EAVRARRKGKPVIASMGDLAASGGYLVAVGADAILAERSTLTGSIGVFAAKPDLSGLLAK 29450 + + R KP+ A D+ S G L+A A L ++ TGSIGV A + L Sbjct: 147 DIIARMRDIKPIWALANDMNCSAGQLIASSASRRLVTQTARTGSIGVMMAHSNYGAALKT 206 Query: 29449 LSIHPEAYQRGENARLASVLKPWTAAERAVLEKQISAFYRQFVARVAEGRRLTXXXXXXX 29270 + G++ + + RA + +I A + F +V+ ++ Sbjct: 207 NGVEVSLIYSGDHKVDGNPYEKLPEDVRADFQTRIDATRQMFAEKVSAYTGMS-VQDVLD 265 Query: 29269 XXGRVWTGQQALERRLVDRIGTLADAIRLARE 29174 V++GQ++++ L D + DA+ + RE Sbjct: 266 TEAAVFSGQESVDNGLADELVNNTDALGVMRE 297 >ref|NP_817450.1|gp112 Length = 108 Score = 43.5 bits (101), Expect = 0.002 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Frame = +3 Query: 13779 RLPAHVRREVWARDGGRCTFVLPSGETCG-----STHRLELDHVVPRARGGASTADNLRI 13943 ++P +++ + RD C + CG +T L DH+ PR+RGGA T DNLR Sbjct: 37 KVPHRLQQATFRRDNWTC-------QQCGRQAQPNTGELHADHIQPRSRGGADTLDNLRT 89 Query: 13944 RCRGHNLEEAR 13976 C+ + ++R Sbjct: 90 LCKACHAPKSR 100 >ref|NP_046863.1|gp48 Length = 235 Score = 43.1 bits (100), Expect = 0.003 Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 13/167 (7%) Frame = -1 Query: 32227 DFIGERLKTGHASPLEQVVFWFGISGVSRALSHQFVRHRIGISFEQQSQRYVKYKEERLD 32048 D++ L GH S LE F I SR++ + RHR +SF SQRYV E L Sbjct: 58 DYLNHILDVGHESVLEHSSATFYIEA-SRSVLTELERHR-HLSFSVVSQRYVDPTE--LG 113 Query: 32047 YVMPKTWQKVAGM-ADEYDRLMREITRVYEDALA--------KGIPA----EDARFVLPN 31907 +P + +++G AD+ ++ ++ ++A G P E AR VLPN Sbjct: 114 IHVPPAFTELSGSDADKAKEVLLDVQSFAQEAYEYLVHIFSDAGFPRKKAREAARAVLPN 173 Query: 31906 ATPTNFQVMVNFTELLHIADLRLCWRAQWEIRHMVALMRREVMKAVP 31766 T + V N ++ R A EIR + + R++ + P Sbjct: 174 MTNSPMVVTGNHRAWRYVIKNRWHEAADAEIRELAGELLRQLREIAP 220 >ref|NP_047961.1|gp16 Length = 237 Score = 43.1 bits (100), Expect = 0.003 Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 7/145 (4%) Frame = -1 Query: 32224 FIGERLKTGHASPLEQVVFWFGISGVSRALSHQFVRHRIGISFEQQSQRYVKYKEERLDY 32045 ++G L GH S LE F + VSRAL + RHR +SF SQRYV + + + Sbjct: 65 YLGNILAQGHFSVLEHASVTFLVRDVSRALLTELSRHR-HLSFSVVSQRYVDHAD--TEP 121 Query: 32044 VMP---KTWQKVAGMADEYDRLMREITRVYEDALAKGI----PAEDARFVLPNATPTNFQ 31886 V+P + + ++Y ++ + A+G E AR +LPNA P + Sbjct: 122 VVPPAIRGTELEKPFREDYAEALQAYDAGVKLLRARGYGRKQAREAARALLPNAAPVDMV 181 Query: 31885 VMVNFTELLHIADLRLCWRAQWEIR 31811 V N + R A EIR Sbjct: 182 VTGNLRAWRDVLGKRWHVAADAEIR 206 >ref|NP_039712.1|predicted 27.8Kd protein Length = 243 Score = 42.0 bits (97), Expect = 0.006 Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 12/166 (7%) Frame = -1 Query: 32227 DFIGERLKTGHASPLEQVVFWFGISGVSRALSHQFVRHRIGISFEQQSQRYVKYKEERLD 32048 D++ + GH S E F I SR++ + RHR +SF SQRYV + + Sbjct: 68 DYLNHIIDLGHESVFEHASATFYIEA-SRSVLTELERHR-HLSFSVVSQRYVDPTDLGI- 124 Query: 32047 YVMPKTWQKVAGMADEYDRLMR----EITRVYEDALAK----GIPA----EDARFVLPNA 31904 ++ P ++ D+ +M EI VYE + + G+P E AR VLPN Sbjct: 125 HLPPALFKLHPDDRDDLVHIMESVSSEIDAVYEHIVNRLADRGLPRKQAREAARAVLPNM 184 Query: 31903 TPTNFQVMVNFTELLHIADLRLCWRAQWEIRHMVALMRREVMKAVP 31766 T + V N ++ R A EIR + + R++ + P Sbjct: 185 TNSPMVVTGNHRAWRYVIKARWHEAADAEIRELAGELLRQLRQIAP 230 >ref|NP_852485.1|Transcriptional regulator Length = 105 Score = 41.6 bits (96), Expect = 0.008 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 5/63 (7%) Frame = -2 Query: 40245 GNVRR-----LRSKKNLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVPPA 40081 G+V+R LR KK +SQ ALADKVG++ +++ LE G+R P +T + VP Sbjct: 30 GHVKRTWLADLRGKKRMSQVALADKVGVTPGHIADLETGRRDPGGKTSLSNRDSTWVPYG 89 Query: 40080 ALL 40072 L Sbjct: 90 TFL 92 >ref|NP_818406.1|gp108 Length = 125 Score = 40.4 bits (93), Expect = 0.018 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = -2 Query: 4611 CTIAGCKRAYRAKGLCFFHYKKFRRGELEAKPA------RWFACSKPECKKKVFQHG--L 4456 C + C + AK LC FH+++ RG+ P W AC P +K F+HG L Sbjct: 45 CKLEWCNGRFYAKDLCRFHHQRLLRGKAMDDPRGNVGIFDWAACGTPAQYRKHFRHGIPL 104 Query: 4455 CEEHFTAWKKSRKKNQ 4408 C+ A +K+ + Q Sbjct: 105 CD----ACRKAESRRQ 116 Score = 37.0 bits (84), Expect = 0.20 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Frame = -2 Query: 4614 SCTIAGCKRAYRAKGLCFFHYKKFRRGELEA----KPARWFACSKPECKKKVFQHGLCEE 4447 +CTI GC++ + A+G C HY ++ R E + + C C + + LC Sbjct: 3 TCTIPGCEKKHHARGFCVVHYGRWTRSSDEPRGNYRRSHRSDCKLEWCNGRFYAKDLCRF 62 Query: 4446 H 4444 H Sbjct: 63 H 63 >ref|YP_025049.1|putative repressor protein Length = 257 Score = 40.4 bits (93), Expect = 0.018 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Frame = -2 Query: 40239 VRRLRSKKNLSQKALADKVGISVSYVSMLERGQ-RSPPLETIEKMAKALGVPPAALL 40072 ++ +R +K +S +LA K+G+S S V E+G P+E + K+A AL + P L+ Sbjct: 7 MKTIRKQKGISADSLAAKIGVSRSTVFRYEKGDIEKVPIEVVAKVANALNIKPEVLM 63 >ref|NP_852481.1|Transcriptional regulator, MerR family Length = 114 Score = 40.0 bits (92), Expect = 0.024 Identities = 20/63 (31%), Positives = 35/63 (55%) Frame = -2 Query: 40260 LTRFAGNVRRLRSKKNLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVPPA 40081 + F N+++ R+ L+Q L DK+ +S S +S LE P L++++++A V Sbjct: 1 MNTFGENLKKFRNSHTLTQAELGDKIQLSRSQISNLENHFNEPDLDSLDRIASFFNVSID 60 Query: 40080 ALL 40072 ALL Sbjct: 61 ALL 63 >ref|NP_536427.1|putative class I holin Length = 118 Score = 38.9 bits (89), Expect = 0.053 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +3 Query: 13794 VRREVWARDGGRCTFVLPSGETCGSTHRLELDHVVPRARGGASTADNLRIRCRG-HNLEE 13970 +R+ + RD G C L +G +T +DHV+ +ARGG +NL+ CR H + Sbjct: 56 IRQRILRRDSGLCQPCLQAGRVTVAT---AVDHVISKARGGTDHDENLQAICRDCHAAKT 112 Query: 13971 ARRIL 13985 AR L Sbjct: 113 ARERL 117 >ref|NP_536425.1|putative helix-turn-helix transcriptional regulator Length = 128 Score = 38.9 bits (89), Expect = 0.053 Identities = 21/51 (41%), Positives = 29/51 (56%) Frame = -2 Query: 40239 VRRLRSKKNLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVP 40087 VR R+ ++Q ALA GIS Y+S +E QR + + K+A AL VP Sbjct: 66 VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVP 116 >ref|NP_945113.1|gp82 Length = 118 Score = 38.9 bits (89), Expect = 0.053 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +3 Query: 13794 VRREVWARDGGRCTFVLPSGETCGSTHRLELDHVVPRARGGASTADNLRIRCRG-HNLEE 13970 +R+ + RD G C L +G +T +DHV+ +ARGG +NL+ CR H + Sbjct: 56 IRQRILRRDSGLCQPCLQAGRVTVAT---AVDHVISKARGGTDHDENLQAICRDCHAAKT 112 Query: 13971 ARRIL 13985 AR L Sbjct: 113 ARERL 117 >ref|NP_945111.1|gp80 Length = 128 Score = 38.9 bits (89), Expect = 0.053 Identities = 21/51 (41%), Positives = 29/51 (56%) Frame = -2 Query: 40239 VRRLRSKKNLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVP 40087 VR R+ ++Q ALA GIS Y+S +E QR + + K+A AL VP Sbjct: 66 VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVP 116 >ref|NP_958562.1|putative repressor Length = 117 Score = 38.1 bits (87), Expect = 0.090 Identities = 19/59 (32%), Positives = 34/59 (57%) Frame = -2 Query: 40248 AGNVRRLRSKKNLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVPPAALL 40072 A + LR +N+SQ L++K GI + ++ +ERG R + ++ +AKA + +LL Sbjct: 9 AKKIINLREDRNMSQIELSEKTGIERTALNKIERGTRKVSSDELKALAKAFNISSDSLL 67 >ref|NP_046617.1|putative SPbeta phage repressor Length = 108 Score = 38.1 bits (87), Expect = 0.090 Identities = 20/60 (33%), Positives = 33/60 (55%) Frame = -2 Query: 40251 FAGNVRRLRSKKNLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVPPAALL 40072 F +++ R+ K SQ+ +AD +GI+ E G+ P L+T+ K++ LGV LL Sbjct: 2 FGERLKKCRTSKGYSQQRMADFLGITRQGYGKYEIGKAEPDLKTLTKLSNILGVSTDFLL 61 >ref|NP_700411.1|regulatory protein Length = 231 Score = 37.4 bits (85), Expect = 0.15 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Frame = -2 Query: 40239 VRRLRSKKNLSQKALADKVGISVSYVSMLERG-QRSPPLETIEKMAKALGVPPAAL 40075 VR+LR KN+ LA+ +G+ + +S LE G Q+ +T+ ++A LGV A L Sbjct: 7 VRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIAEL 62 >ref|NP_813723.1|gp7 Length = 120 Score = 37.4 bits (85), Expect = 0.15 Identities = 25/73 (34%), Positives = 37/73 (50%) Frame = +3 Query: 13797 RREVWARDGGRCTFVLPSGETCGSTHRLELDHVVPRARGGASTADNLRIRCRGHNLEEAR 13976 R E+ R G RC + +TH LDHV P ++GGA A N+ C G NL + Sbjct: 54 RTEIMRRWGYRCAYCDER-----ATH---LDHVHPLSKGGADKASNMLPACAGCNLSKGA 105 Query: 13977 RILGDVLMDAYAP 14015 + L + + ++AP Sbjct: 106 KTLAEWAL-SFAP 117 >ref|NP_700429.1|hypothetical protein Length = 116 Score = 37.0 bits (84), Expect = 0.20 Identities = 19/52 (36%), Positives = 25/52 (48%) Frame = +3 Query: 13794 VRREVWARDGGRCTFVLPSGETCGSTHRLELDHVVPRARGGASTADNLRIRC 13949 +R V RD G C L SG +DH++P+A GG T NL+ C Sbjct: 54 IRARVLKRDKGLCQLCLRSGVV---REAKTVDHIIPKAHGGTDTDSNLQSLC 102 >ref|NP_720300.1|Cro Length = 71 Score = 37.0 bits (84), Expect = 0.20 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = -2 Query: 40242 NVRRLRSKKNLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKAL 40096 N+R++R +SQ LA+KVG + + E G+R P L ++ +AL Sbjct: 3 NLRKIRETMKVSQAVLAEKVGCTQGAIGHYESGRRHPDLRMCRQLVEAL 51 >ref|NP_944303.1|conserved phage mega protein Length = 4602 Score = 37.0 bits (84), Expect = 0.20 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 8/94 (8%) Frame = +3 Query: 33747 ARTHWTRAELRDPARIYNRVDRAGLERLAPD-FPWARFFADLGQPGLDAVS------VTT 33905 +RT W+RAEL A +V++ E +AP+ P + D QP +D VS + Sbjct: 1219 SRTTWSRAELERAAHQGVKVEKQKAEEIAPETAPISSEPTDYKQPAIDTVSAFVRGEIKK 1278 Query: 33906 PAFVAEVGKQFASAPL-DAWKAYLRWHLLDDMAA 34004 P + ++GK A + DA + + L DD +A Sbjct: 1279 PELIDQLGKLAAQHGMTDAQVQAVTYRLGDDFSA 1312 >ref|NP_958298.1|hypothetical protein Length = 393 Score = 36.2 bits (82), Expect = 0.34 Identities = 20/46 (43%), Positives = 27/46 (58%) Frame = -2 Query: 40227 RSKKNLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGV 40090 R + LSQ LA +S+S + +ERG RSP T+E +A AL V Sbjct: 16 RRARRLSQPELAAVAHVSLSMLRAIERGARSPSDATLEALADALDV 61 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 147,043,957 Number of Sequences: 14420 Number of extensions: 2692084 Number of successful extensions: 12044 Number of sequences better than 0.5: 32 Number of HSP's better than 0.5 without gapping: 5614 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12012 length of database: 3,019,461 effective HSP length: 117 effective length of database: 1,332,321 effective search space used: 24236251311 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig69 (53,660 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817450.1|gp112 44 0.001 ref|NP_046572.1|ABC transporter 40 0.018 ref|NP_570377.1|unknown 40 0.030 ref|NP_958267.1|hypothetical protein 37 0.26 ref|NP_700429.1|hypothetical protein 36 0.44 >ref|NP_817450.1|gp112 Length = 108 Score = 44.3 bits (103), Expect = 0.001 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%) Frame = -2 Query: 8161 GRHIPAHVRREVWARDGGRCTFVLASGECCG-----STHRLELDHIVPRACGGVSTVDNL 7997 GR +P +++ + RD C + CG +T L DHI PR+ GG T+DNL Sbjct: 35 GRKVPHRLQQATFRRDNWTC-------QQCGRQAQPNTGELHADHIQPRSRGGADTLDNL 87 Query: 7996 RIRCKGHNLEEAR 7958 R CK + ++R Sbjct: 88 RTLCKACHAPKSR 100 >ref|NP_046572.1|ABC transporter Length = 705 Score = 40.4 bits (93), Expect = 0.018 Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 17/186 (9%) Frame = +3 Query: 1425 LRDVTLEIGRGEFLSIAGPSGSGKTTLLNLIGCVDTPTTGVVQVDGKDTSRLSERQLTDL 1604 + D+ L + R + + I G SG+GK+T + + + ++G D +R + Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK- 557 Query: 1605 RLRTIGFIFQSFNLVQVLSVFQNVEFPLLLQGGLSRRDREGRVMGL--LEAVGIASHARH 1778 +++ + +N P L +G + G + +E I S Sbjct: 558 ---------------RIVYIDEN---PFLFKGTIKENLCMGEIFDQNEIENACIMSQCHE 599 Query: 1779 ---------------RPSELSGGQRQRVAVARALVTAPSLVLADEPTANLDSATGENIID 1913 S LS GQ+QR+A+ARA++ P +++ DE +N+D + I + Sbjct: 600 FICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYE 659 Query: 1914 LMKEMN 1931 + M+ Sbjct: 660 TLHRMD 665 >ref|NP_57037