BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig21 (2248 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 39 0.002 ref|NP_665986.1|unknown 35 0.034 ref|YP_195242.1|hypothetical protein 32 0.22 ref|NP_705630.1|gp03 31 0.49 ref|NP_958107.1|gp03 31 0.49 ref|NP_944311.1|gp03 31 0.49 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 38.9 bits (89), Expect = 0.002 Identities = 42/151 (27%), Positives = 48/151 (31%), Gaps = 3/151 (1%) Frame = -1 Query: 1150 RTRRPHLRPASRQTARSAAFHRVFPRNALPELRRQSGDRQSPARAPPGTEPP*RSRPHQH 971 R R PH R + +T A P R+ R P P P P Sbjct: 10 RARPPHTRTPAPRT------------RAHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHP 57 Query: 970 ARLAPAEATDAPRDRPLLAPGAGQCRQRRSRPHGRHPRL---PGLLARLFGQRRWLRNGC 800 R AP+ PR P +A R+RP R P PG GC Sbjct: 58 CRRAPSRPAAGPRRHPPVA---------RTRPRTRAPECAPDPGPAVHPAAP------GC 102 Query: 799 AQRAPRRPLYRRGLAAAGQRPHAFPCPRRTH 707 A AP P Y A RP A C R H Sbjct: 103 APAAPAAPEY-----APALRPRAPECDRGAH 128 Score = 32.0 bits (71), Expect = 0.29 Identities = 39/139 (28%), Positives = 50/139 (35%), Gaps = 14/139 (10%) Frame = -1 Query: 1138 PHLRPASRQTARSAAFHRVFPRNALPELRRQSGDRQSPARAPPGTEPP*RSR----PHQH 971 P LRP + + R A H + R P R ++ AR E R+R P Sbjct: 114 PALRPRAPECDRGA--HHL--RTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPR 169 Query: 970 ARLAPAEATDAPRDRPL----------LAPGAGQCRQRRSRPHGRHPRLPGLLARLFGQR 821 R+ P R R PG G R+ R RPH HPR R + Sbjct: 170 RRVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRRH 229 Query: 820 RWLRNGCAQRAPRRPLYRR 764 R +RA RP +RR Sbjct: 230 R-------RRASLRPRHRR 241 >ref|NP_665986.1|unknown Length = 213 Score = 35.0 bits (79), Expect = 0.034 Identities = 35/90 (38%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Frame = +2 Query: 332 RCSFTTWALTSFASRTRGKYRRRSPTAMSMISLRESGVRSRDALTTSCR*RPPSLLNIHC 511 R + T +S S T RRRSPT S R S RSR T+ R R PS I Sbjct: 7 RATTTRSRRSSALSTTGSSSRRRSPTTSS----RASSSRSR----TTTRRRSPS--PIAS 56 Query: 512 MVRSSSVAW-----GSVVISRSNHRWIPVI 586 R+S+ W G V S S+ RW PVI Sbjct: 57 RRRTSARRWSGRSAGITVTSGSSTRWTPVI 86 >ref|YP_195242.1|hypothetical protein Length = 1167 Score = 32.3 bits (72), Expect = 0.22 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 2/82 (2%) Frame = -3 Query: 1004 GTAVKISTASACSIGSCRSDRRPTRSTAFGARCWSVPSTKISTAWPPSTASRSSGSAFWP 825 G A ++ ASA + S R +AF + + P + A PP+ + + P Sbjct: 1012 GFAYEVERASAGELSSSMPKRVGAAESAFNSAGTAPPPSPAPLAAPPAASVAAEQQTMTP 1071 Query: 824 APMA--TKWVCPTCPSETSIPP 765 PMA T V P P I P Sbjct: 1072 GPMALTTPPVTPAAPPYNPISP 1093 >ref|NP_705630.1|gp03 Length = 144 Score = 31.2 bits (69), Expect = 0.49 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Frame = +1 Query: 994 TAVPFP-AEREQGFA-DPHFVGEAQEVHSEERLGEMQRSGQFAATQDGDAAAGFDEKELA 1167 T FP A+R QG+A D F +A E +G+++ DG +AGF E+ Sbjct: 16 TEALFPTAQRIQGYAADDAFDPDAVE------------NGEYSMGIDGTLSAGFVFNEVP 63 Query: 1168 IKLNAVADAEALVEIEQV 1221 + + AD+ +L + EQ+ Sbjct: 64 LTITLQADSPSLAQFEQI 81 >ref|NP_958107.1|gp03 Length = 144 Score = 31.2 bits (69), Expect = 0.49 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Frame = +1 Query: 994 TAVPFP-AEREQGFA-DPHFVGEAQEVHSEERLGEMQRSGQFAATQDGDAAAGFDEKELA 1167 T FP A+R QG+A D F +A E +G+++ DG +AGF E+ Sbjct: 16 TEALFPTAQRIQGYAADDAFDPDAVE------------NGEYSMGIDGTLSAGFVFNEVP 63 Query: 1168 IKLNAVADAEALVEIEQV 1221 + + AD+ +L + EQ+ Sbjct: 64 LTITLQADSPSLAQFEQI 81 >ref|NP_944311.1|gp03 Length = 144 Score = 31.2 bits (69), Expect = 0.49 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Frame = +1 Query: 994 TAVPFP-AEREQGFA-DPHFVGEAQEVHSEERLGEMQRSGQFAATQDGDAAAGFDEKELA 1167 T FP A+R QG+A D F +A E +G+++ DG +AGF E+ Sbjct: 16 TEALFPTAQRIQGYAADDAFDPDAVE------------NGEYSMGIDGTLSAGFVFNEVP 63 Query: 1168 IKLNAVADAEALVEIEQV 1221 + + AD+ +L + EQ+ Sbjct: 64 LTITLQADSPSLAQFEQI 81 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,280,595 Number of Sequences: 14420 Number of extensions: 229932 Number of successful extensions: 853 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 775 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 851 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1077163333 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig30 (2432 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,266,623 Number of Sequences: 14420 Number of extensions: 268542 Number of successful extensions: 989 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 881 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 989 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1179436115 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig31 (2181 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,633,261 Number of Sequences: 14420 Number of extensions: 179293 Number of successful extensions: 586 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 555 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 586 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1040872991 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig32 (2793 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_053021.1|hypothetical protein 39 0.002 ref|YP_006601.1|Gp21 33 0.21 ref|NP_859266.1|hypothetical protein 32 0.47 ref|NP_612900.1|hypothetical protein 32 0.47 ref|NP_859100.1|hypothetical protein 32 0.47 >ref|YP_053021.1|hypothetical protein Length = 444 Score = 39.3 bits (90), Expect = 0.002 Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 6/202 (2%) Frame = +3 Query: 1452 VVASASGGVWKTVNAGTTWTPIFDHYGAASIGAVAMFQANPEILWVGTGEANNRNSVAWG 1631 V A ASG ++ + G+TW+ + G + G + ++ G E N + Sbjct: 241 VQAGASGYARRSTDGGSTWSNLPRGLGMRTDGTITKMHGRGNVIVAGNSEQQNSDPTT-- 298 Query: 1632 DGIYKSGDGGKTF--QNSGLKNTLQIARIVT--HPTDPNIVYVAALGNLWAYTGDRGVFK 1799 + S +GG T+ +N G + L +R+ T H D +++ Y Sbjct: 299 --LTISTNGGATWTGKNIGSPDGLG-SRMATMCHVVDSSVI---------VYGMQLHTAI 346 Query: 1800 TADGGRTWQKLTSGL-PADGKTGATDLLMDPDNPEVLYAAFYQRLRQPWRFDSGGPNGGI 1976 + +GG TW L SGL G + T L MD ++ +G NG Sbjct: 347 SRNGGSTWTWLPSGLNSGSGSSNTTMLCMDSVGDTIV---------------AGTYNGSA 391 Query: 1977 FKTIDGGKTWKKL-TNGLPAGE 2039 + + G +W + T GL G+ Sbjct: 392 AVSYNKGLSWSAVPTKGLGTGQ 413 >ref|YP_006601.1|Gp21 Length = 3433 Score = 32.7 bits (73), Expect = 0.21 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 26/114 (22%) Frame = +3 Query: 1320 WSHAQSGDPVAALLADYKWRSIGPASAGGRIIDVKASDRDFRYAVVASASGGVWKTV--- 1490 WSH + ++A+ KW S+ G ++ +YA+ GG W+TV Sbjct: 107 WSHTFTNTQLSAVRVRLKWPSLMKQEDDGDVVG-----NTVKYAIDLQTDGGAWQTVLET 161 Query: 1491 -------------------NAGTTWT----PIFDHYGAASIGAVAMFQANPEIL 1583 AG+TWT + + IG V Q+ E++ Sbjct: 162 AVTGKTTSGYERSHRIDLPQAGSTWTLRLRKVSPDANSVKIGDVMTLQSYTEVI 215 >ref|NP_859266.1|hypothetical protein Length = 164 Score = 31.6 bits (70), Expect = 0.47 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 11/72 (15%) Frame = +2 Query: 2195 GRRRRDVEIPQSL*QPAVLLQPDPDQSVRRSA-------GLCPGDQLSVVTRRRQDI--- 2344 G +R+ +P+SL +P L+Q PD ++R G +L + +R D+ Sbjct: 58 GMQRKARPVPESLKKPPELMQKKPDSMLKRPGWRRRAPERSLSGQRLPLSVLKRPDVWLR 117 Query: 2345 -NGGAGSLRPEL 2377 +GG G LR +L Sbjct: 118 MHGGPGGLREKL 129 >ref|NP_612900.1|hypothetical protein Length = 164 Score = 31.6 bits (70), Expect = 0.47 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 11/72 (15%) Frame = +2 Query: 2195 GRRRRDVEIPQSL*QPAVLLQPDPDQSVRRSA-------GLCPGDQLSVVTRRRQDI--- 2344 G +R+ +P+SL +P L+Q PD ++R G +L + +R D+ Sbjct: 58 GMQRKARPVPESLKKPPELMQKKPDSMLKRPGWRRRAPERSLSGQRLPLSVLKRPDVWLR 117 Query: 2345 -NGGAGSLRPEL 2377 +GG G LR +L Sbjct: 118 MHGGPGGLREKL 129 >ref|NP_859100.1|hypothetical protein Length = 164 Score = 31.6 bits (70), Expect = 0.47 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 11/72 (15%) Frame = +2 Query: 2195 GRRRRDVEIPQSL*QPAVLLQPDPDQSVRRSA-------GLCPGDQLSVVTRRRQDI--- 2344 G +R+ +P+SL +P L+Q PD ++R G +L + +R D+ Sbjct: 58 GMQRKARPVPESLKKPPELMQKKPDSMLKRPGWRRRAPERSLSGQRLPLSVLKRPDVWLR 117 Query: 2345 -NGGAGSLRPEL 2377 +GG G LR +L Sbjct: 118 MHGGPGGLREKL 129 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,170,515 Number of Sequences: 14420 Number of extensions: 335341 Number of successful extensions: 1022 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 909 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1016 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1363707594 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig33 (2403 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_918970.1|hypothetical novel protein 33 0.18 >ref|NP_918970.1|hypothetical novel protein Length = 118 Score = 32.7 bits (73), Expect = 0.18 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 13/71 (18%) Frame = +1 Query: 2035 ADIDGGALGRSEAEAQR------------LNIHIKQRADAAQE-VEGMREGEDVEERVAG 2175 A D A + +AEAQR + H + A AAQ+ VE +E DVE++V+G Sbjct: 29 ASADVAAAKQGQAEAQRDAADARTQTAEVRDAHAQSNAAAAQQGVEAAKERSDVEQQVSG 88 Query: 2176 ITGDEGAGIVE 2208 G G+V+ Sbjct: 89 ADGATFDGLVQ 99 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,021,330 Number of Sequences: 14420 Number of extensions: 218321 Number of successful extensions: 678 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 678 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1162940505 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig34 (1994 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_963990.1|ORF B252 32 0.33 ref|NP_932576.1|hinge connector of long tail fiber distal connector 32 0.33 >ref|NP_963990.1|ORF B252 Length = 252 Score = 31.6 bits (70), Expect = 0.33 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 4/108 (3%) Frame = -2 Query: 1768 QAWGSDGNGNLPSISPYLADPSG---LTVLGTINDGHMATGAAVNIGILQLSKLAAPLTT 1598 Q W G + +P P+G +T+L N+G++ATGA LQ + Sbjct: 56 QVWTYTGTLISYTETPITLYPNGEAFMTLLYNYNNGNVATGA------LQEGSTVIDVYF 109 Query: 1597 ATTGNTNVIDVNAMTSFGDASSISA-PSGTWAGHCTGGDGHNDCTWKG 1457 T+ + N + N + ++G A PS G TG +D W G Sbjct: 110 PTSYSYNSVTYNVINTYGFTDPSGANPSFAIEGTYTGQPPFSDTGWDG 157 >ref|NP_932576.1|hinge connector of long tail fiber distal connector Length = 1420 Score = 31.6 bits (70), Expect = 0.33 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +3 Query: 1641 MFTAAPVAMWPSLMVPSTVRPDGSARYGLIEGRFPLPSLPQAWK 1772 + A V W +VP TV P RY EG+ P S P W+ Sbjct: 1357 LLVAVDVGTW---LVPGTVLPGSQLRYSTAEGKDPSNSPPGNWR 1397 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,547,346 Number of Sequences: 14420 Number of extensions: 239824 Number of successful extensions: 865 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 766 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 862 length of database: 3,019,461 effective HSP length: 94 effective length of database: 1,663,981 effective search space used: 948469170 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig35 (3428 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 36 0.031 ref|YP_164427.1|tail tape measure protein 35 0.040 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 35.8 bits (81), Expect = 0.031 Identities = 48/163 (29%), Positives = 54/163 (33%), Gaps = 37/163 (22%) Frame = +2 Query: 1751 DRRGRQRAASPD-------RLHADRDRQPGAPHLASRDRA-----PGLEQGARSRVPRPP 1894 DRR +R PD RL R+ GA + R R PG + R R P P Sbjct: 156 DRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRR-PHPE 214 Query: 1895 APCRERTGIAAWRSRRFERAVEPRKRRDRSGP---HPQRAAGFP---------------- 2017 P R R R ++ PR RR RS P P AG Sbjct: 215 HPRAVRPRRRTGRRHRRRASLRPRHRRHRSTPPMNTPLTLAGLALTAVILWANLRPWWTG 274 Query: 2018 ------AAGRGKGQPRGRLGEGCPASLRPALADREGHSGRRAG 2128 A GKG G LG C L ALA G AG Sbjct: 275 SRDPKMLAAFGKGAALGVLGAMCTGGLLGALAGCAPSVGNTAG 317 >ref|YP_164427.1|tail tape measure protein Length = 1223 Score = 35.4 bits (80), Expect = 0.040 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 8/160 (5%) Frame = +3 Query: 1734 DKAIDLIDEAGSALRLQIGSMPIEIDNLERRISHLEIERQALSKERDHASHDRLRHVENE 1913 D ID ++ A + +G IE ++ + + IE A +KE A+ R+ +++E Sbjct: 496 DTLIDSVNNTSKAYQDSLGD--IEANSQANKEAAERIEELA-AKENKSAAEKRM--LQDE 550 Query: 1914 LESLRGEAAGLKERWSREKGAIDRVRTLKEQQDSLRQEEEKASRAGDWEKAAQLRYGQLS 2093 +ESL G L + E A++ E + + +EEE A + + Sbjct: 551 IESLNGRVDDLNLSYDEEADALNMSSEQLEARVDIMKEEESLLAARERQVEISKEINDAE 610 Query: 2094 QIEKDIQAAEQEME------SVKS--HALLKEEIDEDDIA 2189 K+I A +E SVKS H E+DE + A Sbjct: 611 MQLKEINALREEWNQKLEEGSVKSKEHKEAIAELDEQEQA 650 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,952,333 Number of Sequences: 14420 Number of extensions: 325895 Number of successful extensions: 1380 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1208 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1372 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1676978244 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig36 (2300 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,380,057 Number of Sequences: 14420 Number of extensions: 266375 Number of successful extensions: 771 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 723 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 770 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1106855431 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig37 (4326 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_050111.1|hypothetical protein 35 0.067 >ref|NP_050111.1|hypothetical protein Length = 294 Score = 35.0 bits (79), Expect = 0.067 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 10/92 (10%) Frame = +2 Query: 2627 DVDLSDEGRQQATEAAEVLKR---------EGYVFDVAYTSVLKR-AIRTLWTVLDGMDL 2776 ++ E +Q+ E EVLK Y FD+ +L ++ T W V+D ++ Sbjct: 83 ELQKKQEKKQERQEKIEVLKEFKDDGATKFSSYYFDLKKNQILSSGSLTTSWRVIDFSEV 142 Query: 2777 MWIPVHRSWRLNERHYGALQGLNKAETAAKFG 2872 + V+R+ L ++H+G + + A G Sbjct: 143 LSYQVNRNGHLEQKHHGIARAVTGGILAGGVG 174 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,048,741 Number of Sequences: 14420 Number of extensions: 432458 Number of successful extensions: 1649 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1383 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1646 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2115375201 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig38 (2348 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_944215.1|hypothetical protein 46 2e-05 ref|NP_818282.1|gp232 41 5e-04 ref|YP_164732.1|orf97 34 0.061 ref|NP_944096.1|hypothetical protein 33 0.18 ref|NP_944291.1|hypothetical protein 32 0.30 ref|YP_006601.1|Gp21 32 0.39 >ref|NP_944215.1|hypothetical protein Length = 1303 Score = 46.2 bits (108), Expect = 2e-05 Identities = 71/275 (25%), Positives = 109/275 (39%), Gaps = 18/275 (6%) Frame = +1 Query: 103 IGGYAQNITGTLSGRVVDQQGSSIANATVTVT-EPDKQITFAKKTSASGDFSVPSLVPGT 279 +G + I G VV + I TV T D IT K+ +A+G L+ Sbjct: 751 VGADGRTIIGGGVNGVVHIRPQGIGTTTVETTINNDGTITLGKQGTAAGH-----LINKA 805 Query: 280 YTISVEAVGFKKLNRTGIALNANDKL--------AVGD--LALEVGAVTESIEVTAAAVA 429 Y +V+A K T N K AVGD LALE+ + +++ + A Sbjct: 806 YVDAVDAKNVAKAGDTMTGDLINTKSVRAPVVLSAVGDRKLALEISSAADNLPYISVDFA 865 Query: 430 LQTESVERSATIIGTQIQNIEVNGRNPLDMAKLVPGVTFTTGTSYAVGSSGTGANTFSVN 609 + + ++ T + EVNGRN + +++ V S+G F Sbjct: 866 YRALEFNDNKSV--TAVHGFEVNGRN--------------STSNFIVRSTG-----FVGG 904 Query: 610 GARPSQNQLSINGIGNVDT--GNNGGMNVSVSTDSIAEFKILTGS--YQAEYGRSVGAQI 777 AR + G+ VDT G+ S + DSIA+ + GS ++A+ G + A Sbjct: 905 WAR------GLAGLSGVDTISTQKAGIGFSGTGDSIAQVYMGMGSAPWEADKGIQINASN 958 Query: 778 SLVTKSGTDQ---FHGAGYWYHRNDSLNANTFINN 873 + K+G D F RN + NA INN Sbjct: 959 QMSFKNGQDGAAIFDAGASAMFRNGTTNAWYHINN 993 >ref|NP_818282.1|gp232 Length = 1151 Score = 41.2 bits (95), Expect = 5e-04 Identities = 55/223 (24%), Positives = 83/223 (37%), Gaps = 3/223 (1%) Frame = +1 Query: 55 VMRKLTLSCVCSFLIAIGGYAQNITGTLSGRVVDQQGSSIANATVTVTEPDKQITFAKKT 234 V K S V + +G +SG V Q S+A + +T P T A K Sbjct: 699 VADKADKSDVTALTSRVGAVETGKADLVSGTVPTAQIPSLAMSKITDLNP----TLAGKA 754 Query: 235 SASGDFSVPSLVPGTYTISVEAVGFKKLNRTGIALNANDKLAVGDLALEVGAVTESIEVT 414 SG V S VP T V + + + + +AL T ++ Sbjct: 755 DLSGGKLVSSQVPDIATSKVTGLDTALSQKADLIAGKIPTSQIPSVAL---TTTYTVANR 811 Query: 415 AAAVALQTESVERS--ATIIGTQIQNIEV-NGRNPLDMAKLVPGVTFTTGTSYAVGSSGT 585 A +AL T V+R A I T + + N +P VP V G +GT Sbjct: 812 GAMLALTTGQVQRGDIAVITATDDKGSYILNADDPSVFGNWVPLVAPDDTVQTVNGKTGT 871 Query: 586 GANTFSVNGARPSQNQLSINGIGNVDTGNNGGMNVSVSTDSIA 714 + + GAR S + ++ I + T NG ++ S T +A Sbjct: 872 VVLSAADVGARSSAASIPMSDITGLVTALNGKVDTSTYTTGLA 914 >ref|YP_164732.1|orf97 Length = 2112 Score = 34.3 bits (77), Expect = 0.061 Identities = 43/184 (23%), Positives = 74/184 (40%) Frame = +1 Query: 229 KTSASGDFSVPSLVPGTYTISVEAVGFKKLNRTGIALNANDKLAVGDLALEVGAVTESIE 408 KT+ GD ++ + I+ AVG +L I LAVG +E A+T++ Sbjct: 453 KTAHIGDGAITNA-----KIANLAVGTAQLEDAAITRAKIGNLAVGTAQIEDAAITDAKV 507 Query: 409 VTAAAVALQTESVERSATIIGTQIQNIEVNGRNPLDMAKLVPGVTFTTGTSYAVGSSGTG 588 +A L +++ S I I +N + +D+ K+V F G + GT Sbjct: 508 GNLSANHLNAGTIDFSV------ISGIHINA-SEIDVGKIVADQIFVNGLGDISKNLGT- 559 Query: 589 ANTFSVNGARPSQNQLSINGIGNVDTGNNGGMNVSVSTDSIAEFKILTGSYQAEYGRSVG 768 + ++NG + + +N + M+V ++F LT Y R+ Sbjct: 560 VTSGNINGTNVNDDIDDLN--------DPNSMSVIEKQTRASQFNGLTSQYNVILSRAKD 611 Query: 769 AQIS 780 A IS Sbjct: 612 ANIS 615 >ref|NP_944096.1|hypothetical protein Length = 534 Score = 32.7 bits (73), Expect = 0.18 Identities = 25/118 (21%), Positives = 52/118 (44%) Frame = +1 Query: 463 IIGTQIQNIEVNGRNPLDMAKLVPGVTFTTGTSYAVGSSGTGANTFSVNGARPSQNQLSI 642 + G+ I+NI ++ L +A++ + T++ GS + + G Q + + Sbjct: 326 VSGSYIKNIRLHANGEL-IARIPDTTSVVAATNFVFGSK-----QYPITGVIVEQFGMFV 379 Query: 643 NGIGNVDTGNNGGMNVSVSTDSIAEFKILTGSYQAEYGRSVGAQISLVTKSGTDQFHG 816 NG ++ G N+S T S + G+ + +Y +GA + +T D++ G Sbjct: 380 NGRNHIFNIEEGSGNISSETPSPDNLTVDFGTDETKY-EWLGALLPKITVQPADEYIG 436 >ref|NP_944291.1|hypothetical protein Length = 688 Score = 32.0 bits (71), Expect = 0.30 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 4/113 (3%) Frame = +1 Query: 1405 TSIANPIPGRSFAAGATW----IINPSMTNEVNWGFTHNSILIDEAGQVLRRTTSGITLP 1572 T+ P+ G GA ++N ++ E ++G T N AG +L +T P Sbjct: 578 TATPTPVSGAFTTVGAMTGQYKLVNNTVKAEFDFGITTNGTA---AGAIL------LTYP 628 Query: 1573 LLYPSANQKDYIPAVSFNGTRITASPGFGTGNAPFVNYNTTIDLSDNLTKVWS 1731 PSAN + NG + G GTGN ++ T +D V S Sbjct: 629 YGSPSANFIGIGKEKNLNGKAVLVDAGQGTGNMQIRFFDNTYPGADGCRLVGS 681 >ref|YP_006601.1|Gp21 Length = 3433 Score = 31.6 bits (70), Expect = 0.39 Identities = 49/171 (28%), Positives = 67/171 (39%), Gaps = 3/171 (1%) Frame = +1 Query: 121 NITGTLSGRVVDQQGSSIANATVTV-TEPDKQITFAKKTSASGDFSVPSLVPGTYTISVE 297 ++ TLS + SI +A + T D+QI KT GD ++ S ++ Sbjct: 896 SVNQTLSDNIT-AVNKSITDAVSDINTSVDQQIADVNKTLTEGDAALKS--------QLQ 946 Query: 298 AVGFKKLNRTGIALNANDKLAVGDLALEVGAVTESIEVTAAAVALQTESVERSATIIGTQ 477 AV A DK + A + V + + AA L E ER A I TQ Sbjct: 947 AVENSLKQSIAQANTGWDKAVKQETADRIADV--NAKAAQAADQLLNEKNERVAAIESTQ 1004 Query: 478 --IQNIEVNGRNPLDMAKLVPGVTFTTGTSYAVGSSGTGANTFSVNGARPS 624 IQN VN MAK+ G T S A+ G ++ NG PS Sbjct: 1005 QIIQN--VNDSLATQMAKISAG-TGEQFDSQAIWYFDNGREGWTSNGGTPS 1052 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,933,668 Number of Sequences: 14420 Number of extensions: 256352 Number of successful extensions: 946 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 865 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 946 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1133248407 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig39 (4041 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817998.1|gp25 35 0.062 ref|NP_861945.1|gp38 distal long tail fiber assembly catalyst 33 0.18 >ref|NP_817998.1|gp25 Length = 941 Score = 35.0 bits (79), Expect = 0.062 Identities = 35/137 (25%), Positives = 50/137 (36%), Gaps = 4/137 (2%) Frame = +2 Query: 2414 AAKYSGAGLDRRNGGGIHVSDCEMGHACDGACGAARGSEIARRRSAVRAGDERTFCAVCS 2593 A YSG G D +GG + + +G G +G+ + + G + Sbjct: 792 AKAYSGDGKDGADGGASTFTSGGVSLTANGGQGGKKGTNSSSSGARGLGGT----AVITG 847 Query: 2594 RSLYRCSGNRGRVPGRLGAGGKHRTAGAGSGARGD----RVTSAVFPGGNRPARQPGGVF 2761 SG G G G+ RT GAG+G +G + + G N + P G Sbjct: 848 LDATGFSGGNGGNGGSSPTNGQSRTNGAGAGGKGGGGKLSNDNTISGGNNGTSDGPAG-- 905 Query: 2762 QPAQRAPGGGDSAGRSG 2812 GG SAG SG Sbjct: 906 ------NGGFGSAGGSG 916 >ref|NP_861945.1|gp38 distal long tail fiber assembly catalyst Length = 257 Score = 33.5 bits (75), Expect = 0.18 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Frame = +2 Query: 2633 PGRLGAGGKHRTAGAGSGARGDRVTSAVFPGGNRPARQPGGVFQPAQRAPG-GGDSAGRS 2809 P GG R G G G +PGGN PGG +Q G GGD+ GR Sbjct: 167 PNATAGGGGGRPFGIGGGGVN-------WPGGNASYDAPGGAGYTSQFGGGNGGDAGGRG 219 Query: 2810 G 2812 G Sbjct: 220 G 220 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,447,254 Number of Sequences: 14420 Number of extensions: 465400 Number of successful extensions: 1789 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1475 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1785 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1985075607 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig40 (2203 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_025041.1|putative transposase B 33 0.13 ref|NP_665968.1|unknown 32 0.28 >ref|YP_025041.1|putative transposase B Length = 280 Score = 33.1 bits (74), Expect = 0.13 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 5/58 (8%) Frame = +2 Query: 1988 MCQLVGVSRAGYYRHWEVVAPDEAEMAARDA-----IQKVVLAHHRRYGYRRVTAQLH 2146 MC+++GVSRA YYR+ +P ++ A DA I ++ +RYG ++ +L+ Sbjct: 1 MCRILGVSRAQYYRY---RSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELN 55 >ref|NP_665968.1|unknown Length = 144 Score = 32.0 bits (71), Expect = 0.28 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = -3 Query: 767 RPSSCCASGNCGRS-RSASRNCATASSVRPRLAAAIPRLKRASTSDGRSCTVARNSRAA 594 R ++ C++GNC RS R + S+ +AA PR R + G+ T AR+S A+ Sbjct: 51 RTTTSCSAGNCARSVRPVEASSCGFVSLGVVVAAIGPRAHREPATPGKDDTPARHSDAS 109 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,279,910 Number of Sequences: 14420 Number of extensions: 200976 Number of successful extensions: 664 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 614 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 664 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1052419918 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig41 (3792 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,453,488 Number of Sequences: 14420 Number of extensions: 324900 Number of successful extensions: 1122 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 938 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1122 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1852949484 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig42 (5583 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046874.1|putative DNA primase 51 2e-06 ref|NP_039722.1|predicted 14.5Kd protein 50 3e-06 ref|NP_817647.1|gp58 48 1e-05 ref|NP_813724.1|gp9a 45 1e-04 ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family 44 2e-04 ref|YP_006949.1|putative DNA replication primase 43 4e-04 ref|NP_049648.1|gp61 DNA primase subunit 39 0.005 ref|NP_861720.1|gp61 DNA primase subunit 39 0.006 ref|NP_047955.2|gp9a 39 0.008 ref|NP_803652.1|ORF086 38 0.010 ref|NP_075318.1|gp51 35 0.087 ref|YP_112516.1|putative membrane protein 34 0.19 ref|NP_958593.1|putative putative minor tail protein 33 0.43 >ref|NP_046874.1|putative DNA primase Length = 129 Score = 50.8 bits (120), Expect = 2e-06 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%) Frame = +2 Query: 1010 LCPFHDEKSPSFTVHVVHQFYKCFSCGAGGDVVKFVMEKEGISFYEALK---SLSERYGI 1180 LCPFH +++PS V Q + C +CG GDV+ + +E +SF EA++ LS I Sbjct: 30 LCPFHGDETPSAAVSYDLQGFNCLACGVRGDVISIIRHEEEVSFAEAVRIAEGLSVGGNI 89 Query: 1181 PMPKR 1195 P+ ++ Sbjct: 90 PVQRK 94 >ref|NP_039722.1|predicted 14.5Kd protein Length = 130 Score = 50.1 bits (118), Expect = 3e-06 Identities = 22/57 (38%), Positives = 34/57 (59%) Frame = +2 Query: 1010 LCPFHDEKSPSFTVHVVHQFYKCFSCGAGGDVVKFVMEKEGISFYEALKSLSERYGI 1180 LCPFH +++PS V Q Y C +CG GDV+ + +E ++F EA K ++E + Sbjct: 30 LCPFHGDETPSAAVSYDLQGYNCMACGVRGDVISIIRHEEEVTFAEA-KRIAENLSV 85 >ref|NP_817647.1|gp58 Length = 135 Score = 48.1 bits (113), Expect = 1e-05 Identities = 18/52 (34%), Positives = 31/52 (59%) Frame = +2 Query: 1013 CPFHDEKSPSFTVHVVHQFYKCFSCGAGGDVVKFVMEKEGISFYEALKSLSE 1168 CPFH +++PS ++ H ++CF+C G V + E+E +S+ EA + E Sbjct: 33 CPFHGDETPSASISFKHNAFRCFACPVKGSAVAIIKEQEEVSYAEAKRIAEE 84 >ref|NP_813724.1|gp9a Length = 808 Score = 44.7 bits (104), Expect = 1e-04 Identities = 88/387 (22%), Positives = 151/387 (39%), Gaps = 15/387 (3%) Frame = +2 Query: 941 VDIVSVIGEYVRLRRSGTQRYMGLCPFHDEKSPSFTVHVVHQFYKCFSCGAGGDVVKFVM 1120 +D VS++G + + Y+ +CP H + PS + +C AG + K V+ Sbjct: 1 MDFVSILGRFKHVSEEPDGGYLAVCPAHADSRPSLRIWRGDDLKVRLTCRAGCET-KDVV 59 Query: 1121 EKEGISFYEALKSLSERYGIPMPKRSQYADEDSKLRGSLLVMHELAAENFRDNLKSQAGD 1300 + G+ + + + E G + K E K+ G V+ A + ++L + Sbjct: 60 KAAGLKWADLFDATGE--GATVSK------ERPKMVGPANVV---ALRMWLESLPATELG 108 Query: 1301 NARAYIAQR-GLAPETVEHFGLGY-ADRSGRALVRLFEQREFSVAQMEQSGLVGKRQDGS 1474 A AY R G+ P E GL Y A +G A F F+ Sbjct: 109 PAGAYACDRFGIDPGEAERLGLRYWAPVAGLASPVSFVSPSFA----------------- 151 Query: 1475 LYDRFRNRLMFPIHNEQGKIIAFGGRALSPDDEPKYLN--SPETDIYKKSHVLYNLHRAK 1648 RF R++ P+ G + GR LS ++L+ +PE + Y + R + Sbjct: 152 ---RFP-RMVVPLKGFDGVVRGAQGRDLSGKCPGRWLSLSNPEGQRWAP----YGVFRGE 203 Query: 1649 QGIRKEDRAILVEGYMDVIGVTAAGFHNVVACCGTAFG------AQQVQAIKRHTHRIAV 1810 G ++ EG D + + G+ + VA G + A+ + +K ++ V Sbjct: 204 AGYGV---ILITEGPGDALTAVSVGY-DAVAVRGASLVNNPELVAELAKGLKGA--QVIV 257 Query: 1811 NFDPDAAGAGASERSLDLLLAEGMQVRIVELDGGLDPDEYCKERGTEAYQARIDGAKGYF 1990 D D AG G + R + L G+ + L D +ER A+ + + A Sbjct: 258 CGDNDTAGTGFTTRLAEGLAGHGIDAYALSLPVPGDDLTDWRERDPAAFPSALHAAIKAA 317 Query: 1991 YWLADRARAKHDMRTSE-----GKVAV 2056 + DRA+ + + R +E G VAV Sbjct: 318 RPVKDRAQVEAEHRKAEVVQRTGAVAV 344 >ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family Length = 92 Score = 43.5 bits (101), Expect = 2e-04 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Frame = +1 Query: 127 LTQTQLVRQLAEKAEVNNKVARALLDNLAATAISEVKKNGVFV-LPGIGRLVRVDRKARM 303 + +T+L+ ++AEK V+ K ++ + T ISE K+G V +PG G +R AR Sbjct: 1 MNKTELIAKVAEKQGVSKKEGAPSVEKVFDT-ISEALKSGEKVSIPGFGTFEVRERAARK 59 Query: 304 GRNPATGE 327 GRNP TGE Sbjct: 60 GRNPQTGE 67 >ref|YP_006949.1|putative DNA replication primase Length = 296 Score = 42.7 bits (99), Expect = 4e-04 Identities = 44/160 (27%), Positives = 65/160 (40%), Gaps = 9/160 (5%) Frame = +2 Query: 1487 FRNRLMFPIHNEQGKIIAFGGRALSPDDEPKYLNSPETDIYKKSHVLYNLHRAKQGIRKE 1666 + R++FPI + G+ I F GR+++ PKYL P+ V YN Sbjct: 126 WEGRIVFPITDAVGRNILFLGRSINSSAPPKYLVKPKQVSPPIFPVRYN----------T 175 Query: 1667 DRAILVEGYMDVIGVTAAGFHNVVACCGTAFGAQQVQAIKRHTHRIA------VNFDPDA 1828 ILVEG D++ + G C GT A K + IA + D DA Sbjct: 176 PVLILVEGIFDMLNLEDNGIDYASCCFGTHQFTSDNIADKFSPYIIAGVKVVVILLDNDA 235 Query: 1829 AGAGASERSLDLLLAEGMQVRIVE---LDGGLDPDEYCKE 1939 +G A++ L+ + +V L G DP + KE Sbjct: 236 SGNKAAQALAKLIRTKTRLTPVVANFLLPEGKDPGDLNKE 275 >ref|NP_049648.1|gp61 DNA primase subunit Length = 342 Score = 39.3 bits (90), Expect = 0.005 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = +2 Query: 1496 RLMFPIHNEQGKIIAFGGRALSPDDEPKYLNSPETDIYKKSHVLYNLHRAKQG 1654 RL+ PI+N GK +F GRAL D KY+ + Y ++ +Y + R K G Sbjct: 179 RLVIPIYNANGKAESFQGRALKKDAPQKYIT---IEAYPEATKIYGVERVKDG 228 >ref|NP_861720.1|gp61 DNA primase subunit Length = 340 Score = 38.9 bits (89), Expect = 0.006 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = +2 Query: 1433 MEQSGLVGKRQDGSLYDRFRN-RLMFPIHNEQGKIIAFGGRALSPDDEPKYLNSPETDIY 1609 +E LV K Q G+ RL+ PI N+ GK +F GRAL D KY+ + Sbjct: 155 LEWPKLVNKIQPGTYKKEIPEPRLVIPIFNKDGKAESFQGRALRKDAPQKYIT---IKAF 211 Query: 1610 KKSHVLYNLHRAKQG 1654 + + +Y + R K+G Sbjct: 212 ESATKIYGVERVKEG 226 >ref|NP_047955.2|gp9a Length = 805 Score = 38.5 bits (88), Expect = 0.008 Identities = 82/378 (21%), Positives = 144/378 (38%), Gaps = 11/378 (2%) Frame = +2 Query: 941 VDIVSVIGEYVRLRRSGTQRYMGLCPFHDEKSPSFTVHVVHQFYKCFSCGAG---GDVVK 1111 +D S++G + + Y+ LCP H + PS + +C AG GDVV Sbjct: 1 MDFASILGRFKAVSEEPDGGYLALCPAHSDSRPSLRIWRGDDLKVRLTCRAGCDTGDVVS 60 Query: 1112 FVMEKEGISFYEALKSLSERYGIPMPKRSQYADEDSKLRGSLLVMHELAAENFRDNLKSQ 1291 V G+ + + + E G+ +PK ++ + G+ + + E+ L Sbjct: 61 SV----GLKWSDLFNASGE--GLTVPK-----EKPKMVSGAPVTRLRMWLESL--PLTQD 107 Query: 1292 AGDNARAYIAQR-GLAPETVEHFGLGYA-DRSGRALVRLFEQREFSVAQMEQSGLVGKRQ 1465 A D Y A R GL E GL Y+ D G ++ +F Sbjct: 108 AAD----YAADRFGLDVAQAEALGLRYSPDGQG------YDWPDFV-------------- 143 Query: 1466 DGSLYDRFRNRLMFPIHNEQGKIIAFGGRALSPDDEPKYLNSPETDIYKKSHVLYNLHRA 1645 + + RF R++ P+ G GR LS ++L+ D + Y + R Sbjct: 144 -STSFARF-PRMVVPLKGFDGVTRGAQGRDLSGKCPGRWLSLKNPD--GQRWAPYGVFRG 199 Query: 1646 KQGIRKEDRAILVEGYMDVIGVTAAGFHNVVACCGTA------FGAQQVQAIKRHTHRIA 1807 G ++ EG D + + G+ + VA G + A+ + +K ++ Sbjct: 200 DAGY---GVVLITEGPGDALTAVSVGY-DAVAVRGASLVNNPELVAELAEGLK--GFQVI 253 Query: 1808 VNFDPDAAGAGASERSLDLLLAEGMQVRIVELDGGLDPDEYCKERGTEAYQARIDGAKGY 1987 V D D AG G + R + L G+ + + D +ER + +R+ A Sbjct: 254 VCGDNDTAGVGFTLRLSEGLAGHGIDAYALNVPVPGDDLTDWRERDPGKFPSRLHDAVKS 313 Query: 1988 FYWLADRARAKHDMRTSE 2041 + DRA+ + + R +E Sbjct: 314 ARPVRDRAQVEAEHRKAE 331 >ref|NP_803652.1|ORF086 Length = 428 Score = 38.1 bits (87), Expect = 0.010 Identities = 19/51 (37%), Positives = 30/51 (58%) Frame = -2 Query: 2951 FFTGLFDLFLEILRFFQDFDSRDIEAGQHVVKIVAAVDIAGQHFADLVVQD 2799 +F L +LF +++R+ DF RD+ KIV AVD A F +L+V++ Sbjct: 135 WFEKLMELFAKLMRWISDFKKRDVVVATRYGKIVRAVDQARTLFQELLVKN 185 >ref|NP_075318.1|gp51 Length = 171 Score = 35.0 bits (79), Expect = 0.087 Identities = 15/53 (28%), Positives = 26/53 (49%) Frame = +2 Query: 1010 LCPFHDEKSPSFTVHVVHQFYKCFSCGAGGDVVKFVMEKEGISFYEALKSLSE 1168 LC H+E PS V + C +C A G+ + +M E +++ A++ E Sbjct: 33 LCWHHEESRPSAAVSYQLNAFNCLACSARGNAITLLMTYEEVNYQTAVERAQE 85 >ref|YP_112516.1|putative membrane protein Length = 612 Score = 33.9 bits (76), Expect = 0.19 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Frame = +3 Query: 3462 RSAVEELRPVENDLAKTQRKLETWPAARAEAIKDLRKEQRSYGQKLQQMEEQYGASAAEL 3641 +SA+EE+ ++ +A Q + AR +A+KDL+ + +Y L + + YG L Sbjct: 188 KSAIEEVGALQGLIAVAQSDTVS-RKARTQAVKDLQSQYPAYFGNLSKEQIMYG----NL 242 Query: 3642 RRTLEIITQA---HQEAETAKKELIEANLRL 3725 T++ +TQA AE K+ +E L L Sbjct: 243 SGTIKDVTQALINKGIAEKLTKDAVEPTLNL 273 >ref|NP_958593.1|putative putative minor tail protein Length = 2021 Score = 32.7 bits (73), Expect = 0.43 Identities = 51/257 (19%), Positives = 97/257 (37%), Gaps = 24/257 (9%) Frame = +3 Query: 3054 EGEVEIARRIERGQNTVLKSLFRAPLVVQEIIGMGEEVINDTLSARDVIQ-IADPMLTDE 3230 +G E A + N KSL +QE M + + T +A DVI+ I+ P + Sbjct: 95 QGNKEQAESSKEAVNQSEKSLDSLTARLQEASNMQQRIAQQTSTAHDVIKDISRPKSQTQ 154 Query: 3231 MVEEKRQEFARHTEEIARYYKKTLQCRQKLMAIPRGMKPK---QYRRQLWEVARLIVRTA 3401 + E + Y +K +Q + G+ + + R EV L+ Sbjct: 155 VKEPLKSTSQNDYSSFDNYQEKRIQSYMPKRPVDLGIDDEIQAEASRAKKEVDSLVTHIN 214 Query: 3402 RLCRAVKFQSPVIRHL--------IDRLRSAVEELRPVENDLAKTQRKLETWPAARAEAI 3557 + I L + + S V+ +R +++ +A Q K+E + Sbjct: 215 EKMEQARSMQRRIATLTANRDNLDMSKQGSKVKAMR-LDDQIADAQIKMERYQTQAKALA 273 Query: 3558 KDLRKEQRSYGQKLQQMEEQYGASAAELRRTLEIITQAHQEAET------AKKEL--IEA 3713 +++ +E + L+++E + + ++ R I + T KE+ EA Sbjct: 274 QEMSQELDTVPNSLRRIEREMDQTEGKIERIRRSIAEMRDNDATLGRSSGTNKEIKNAEA 333 Query: 3714 NLRLVVS----IAKRYT 3752 R +V+ +AK YT Sbjct: 334 EYRRLVARSNELAKAYT 350 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,591,514 Number of Sequences: 14420 Number of extensions: 503898 Number of successful extensions: 1730 Number of sequences better than 0.5: 13 Number of HSP's better than 0.5 without gapping: 1485 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1729 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2749389119 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig43 (5546 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,231,180 Number of Sequences: 14420 Number of extensions: 460396 Number of successful extensions: 1743 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1415 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1740 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2730632627 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig44 (4853 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,136,992 Number of Sequences: 14420 Number of extensions: 537388 Number of successful extensions: 1777 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1512 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1776 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2393008337 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig45 (4898 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_075271.1|gp4 41 0.001 ref|NP_056692.1|gp373 36 0.045 ref|NP_038337.1|ORF36 35 0.058 ref|NP_076689.1|Orf55 35 0.099 ref|NP_817478.1|gp28 33 0.22 ref|NP_958267.1|hypothetical protein 33 0.29 ref|YP_024939.1|gp19 33 0.38 ref|NP_695121.1|hypothetical protein 32 0.49 ref|YP_164321.1|hypothetical protein 32 0.49 >ref|NP_075271.1|gp4 Length = 356 Score = 41.2 bits (95), Expect = 0.001 Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 7/136 (5%) Frame = -1 Query: 1814 AGVGFTPEMTATI-NNLGVAIDSLEAVSKTWAYLGLTIAPNAAPGPANLTLTTVAGTSAP 1638 A +G P T+ + +G D ++ A GLT + + AN TL GTS+ Sbjct: 224 AALGDDPNFATTVASQIGAKADKATTIT---AGTGLTGGGDLS---ANRTLNVSFGTSST 277 Query: 1637 VVFT------INTPAPTLASVTPAVGAQGTDVPVTLSGTNFFAGATVSSSNPGIAVKNVL 1476 NT PT SVT A A G + ++ T + AG S N G + Sbjct: 278 TACVGNDSRLSNTRTPTDGSVTNAKVASGAGIALSKLATGYVAG----SDNSGARTLTIW 333 Query: 1475 VVSETQITAIFTIASN 1428 V +E Q TAI T SN Sbjct: 334 VGTEAQYTAIGTKDSN 349 >ref|NP_056692.1|gp373 Length = 373 Score = 35.8 bits (81), Expect = 0.045 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 15/156 (9%) Frame = -1 Query: 1835 SGVKVTIAGVGFTPEMTATINNLGVAIDSLEAVSKTWA----------YLGLTIAPNA-- 1692 S ++TI + ++ A I GV + +A ++TW+ L LT A + Sbjct: 5 SSGQITITDLSDGMQLNAFITASGVTTQTYDATAQTWSPSYATNPQVLTLNLTKAGSTES 64 Query: 1691 --APGPANLTLTTVAGTSA-PVVFTINTPAPTLASVTPAVGAQGTDVPVTLSGTNFFAGA 1521 + N+T T GTS + T +T A L+ +V +VP+ S + F A Sbjct: 65 VISGVSGNITWTRTDGTSTNTITSTSSTDAQHLSGNANSVLTTKVNVPIANSASRFTASG 124 Query: 1520 TVSSSNPGIAVKNVLVVSETQITAIFTIASNAALGN 1413 N G+ V V+ T + +A +A L N Sbjct: 125 IWIDPNTGLKVPFSAVLDLT----VVQLAKSAVLAN 156 >ref|NP_038337.1|ORF36 Length = 373 Score = 35.4 bits (80), Expect = 0.058 Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 17/158 (10%) Frame = -1 Query: 1835 SGVKVTIAGVGFTPEMTATINNLGVAIDSLEAVSKTWA----------YLGLTIAP---- 1698 S ++TI + ++ A I GV + +A ++TW+ L LT A Sbjct: 5 SSGQITITDLSDGMQLNAFITASGVTTQTYDATAQTWSPSYATNPQVLTLNLTKAGSTES 64 Query: 1697 --NAAPGPANLTLTTVAGT-SAPVVFTINTPAPTLASVTPAVGAQGTDVPVTLSGTNFFA 1527 N G N+T T GT + + T NT A L+ +V +VP+ S + F A Sbjct: 65 VINGVSG--NITWTRTDGTRTTTITSTSNTDAQHLSGNANSVLTTKVNVPIANSASRFTA 122 Query: 1526 GATVSSSNPGIAVKNVLVVSETQITAIFTIASNAALGN 1413 N G+ V V+ T + +A ++ L N Sbjct: 123 SGIWIDPNTGLKVPFSAVLDLT----VVQLAKSSVLAN 156 >ref|NP_076689.1|Orf55 Length = 373 Score = 34.7 bits (78), Expect = 0.099 Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 15/156 (9%) Frame = -1 Query: 1835 SGVKVTIAGVGFTPEMTATINNLGVAIDSLEAVSKTWA----------YLGLTIAPNAAP 1686 S ++TI + ++ A I GV + +A ++TW+ L LT A + Sbjct: 5 SSGQITITDLSDGMQLNAFITASGVTTQTYDATAQTWSPSYATTPQVLTLNLTKAGSTTS 64 Query: 1685 G----PANLTLTTVAG-TSAPVVFTINTPAPTLASVTPAVGAQGTDVPVTLSGTNFFAGA 1521 N+T T G T+ + T NT ++ +V +VP+ S + F A Sbjct: 65 VIGGISGNITWTRADGTTTTTITSTTNTDTQYMSGSANSVLTTKVNVPIANSASRFTASG 124 Query: 1520 TVSSSNPGIAVKNVLVVSETQITAIFTIASNAALGN 1413 N G+ V V+ T + +A +A L N Sbjct: 125 LWVDPNTGLNVPFSAVLDLT----VVQLAKSAVLAN 156 >ref|NP_817478.1|gp28 Length = 320 Score = 33.5 bits (75), Expect = 0.22 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 7/94 (7%) Frame = -1 Query: 1847 NRGASGVKVTIAGVGFTPEMTATINNLGVAIDSLE------AVSKTWAYLGLT-IAPNAA 1689 N GA G VT GVG T TI + GVA+ + +V + ++ G+T A N Sbjct: 225 NVGAIGTPVTAYGVGDTASQALTIPSNGVALQVVSSGRGSASVGEYTSFSGVTNHAHNRI 284 Query: 1688 PGPANLTLTTVAGTSAPVVFTINTPAPTLASVTP 1587 G + + TV+ + +T P A P Sbjct: 285 NGAVTMAINTVSASGVATSTATSTTNPWAAITIP 318 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 33.1 bits (74), Expect = 0.29 Identities = 31/89 (34%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Frame = +1 Query: 4327 RDHLQGGRQPGTRRRLVPRLRTIPRWHAGLVDRPFARR-HHRLRDQPCARPGTAHHARHP 4503 R ++ R+ RRR PR R PR G+ R ARR R+R + PG A R Sbjct: 151 RTPVEDRRRTRRRRRPDPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRR 210 Query: 4504 PGRGQRRFELGLRSSAHPRA-HDRRRAGR 4587 P HPRA RRR GR Sbjct: 211 P------------HPEHPRAVRPRRRTGR 227 >ref|YP_024939.1|gp19 Length = 357 Score = 32.7 bits (73), Expect = 0.38 Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 20/163 (12%) Frame = -1 Query: 1883 PPAIGSLTPARGNRGASGVKVTIAGVGFT------PEMTATINNLGVAIDSLEAV----- 1737 PPA G+ TPA + T++G GF+ P + AT G +L+A Sbjct: 156 PPAFGNTTPAAVSATTLSASSTVSGSGFSTYLASPPAIGATTPAAG-KFTTLQATGAITP 214 Query: 1736 SKTWAYLGLTIAPNAA-------PGPANLTLTTVAGTSAPVVFTINTPAP--TLASVTPA 1584 S T +G T NA+ P P NLT ++ +A +++ A ++ + Sbjct: 215 SSTAGIVGTTTNDNASAGSVGEYPTPTNLTGVSLTSGAAANGASVSLTAGDWEVSGMCQF 274 Query: 1583 VGAQGTDVPVTLSGTNFFAGATVSSSNPGIAVKNVLVVSETQI 1455 + A T + ++G N + A + N A++ L Q+ Sbjct: 275 IPAGTTTISSIIAGINTTSAALPGAPNE-TAIQGTLTTGAQQL 316 >ref|NP_695121.1|hypothetical protein Length = 373 Score = 32.3 bits (72), Expect = 0.49 Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 22/163 (13%) Frame = -1 Query: 1835 SGVKVTIAGVGFTPEMTATINNLGVAIDSLEAVSKTWAYLGLTIAPNAAPGPANLTLT-T 1659 S ++TI + ++ A I GV + +A ++TW +P+ A P LTL T Sbjct: 5 SSGQITITDLSDGMQLNAFITASGVTTQTYDATAQTW-------SPSYATNPQVLTLNLT 57 Query: 1658 VAGTSAPVVFTIN-------TPAPTLASVTPAVGAQ--------------GTDVPVTLSG 1542 AG++ V+ I+ T T ++T G +VP+ S Sbjct: 58 KAGSTDSVINGISGNITWTRTDGTTTNTITSTSGTDTEYLSGHANSVLTTKVNVPLANSA 117 Query: 1541 TNFFAGATVSSSNPGIAVKNVLVVSETQITAIFTIASNAALGN 1413 + F A N G+ V V+ T + +A +A L N Sbjct: 118 SRFTASGIWIDPNTGLKVPFSAVLDLT----VVQLAKSAVLAN 156 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 32.3 bits (72), Expect = 0.49 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Frame = +1 Query: 4207 RHGRSRHQAGMLRHFARDQ-QLRFEPVQRGHRNLRAHHRGGRDHLQGGRQPGTRRRLVPR 4383 + GR R+ + RH DQ +LR QR HR G D GG PG R Sbjct: 535 QRGRRRNAISLCRHEQPDQHRLRRNADQRVHREDAERRTAGADRSGGGEGPGAVHRSASG 594 Query: 4384 LRTI 4395 R++ Sbjct: 595 RRSV 598 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,749,518 Number of Sequences: 14420 Number of extensions: 473800 Number of successful extensions: 1868 Number of sequences better than 0.5: 9 Number of HSP's better than 0.5 without gapping: 1544 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1861 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2416670252 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig46 (4781 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_050160.1|hypothetical protein 47 1e-05 ref|NP_818206.1|gp133 43 3e-04 ref|YP_164769.1|orf134 40 0.002 ref|YP_024487.1|hypothetical protein 35 0.057 ref|NP_116519.1|putative lysin 34 0.17 ref|NP_958267.1|hypothetical protein 34 0.17 ref|NP_076634.1|lysin 33 0.22 ref|NP_076751.1|lysin 33 0.28 ref|NP_076695.1|lysin 33 0.37 >ref|NP_050160.1|hypothetical protein Length = 1487 Score = 47.4 bits (111), Expect = 1e-05 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Frame = +2 Query: 2519 GLPYTWGGTSSYGYDCSGFSQMLGRRRGV-NMPRDAQPQAEWS-GVAPVDRKDLQAGDLL 2692 G PY WG +DCSG + R+ V + P + Q S GV KD Q GDL+ Sbjct: 1102 GKPYVWGSEGPDSFDCSGLVKYSLERQSVKSFPHYSGDQYAMSRGV-----KDPQIGDLV 1156 Query: 2693 YFGSSEKKITHTGIYMGDGKFINATTHLTPMIRIDDLND 2809 +FG + H G+Y G+GK +A + + I +D+++D Sbjct: 1157 FFGPGGR--NHVGVYAGNGKVWSARSPRSG-IGMDNVSD 1192 >ref|NP_818206.1|gp133 Length = 948 Score = 43.1 bits (100), Expect = 3e-04 Identities = 29/106 (27%), Positives = 48/106 (45%) Frame = +2 Query: 2447 AGDISLAPKTMSISETLEFSKRFLGLPYTWGGTSSYGYDCSGFSQMLGRRRGVNMPRDAQ 2626 AG++ PK + + L F++ +G PY WG T YDCSG ML R + + Sbjct: 501 AGELLGQPK-FNTAGALSFARAQIGRPYVWGATGPASYDCSGL--MLAAYRSIGIEIGRT 557 Query: 2627 PQAEWSGVAPVDRKDLQAGDLLYFGSSEKKITHTGIYMGDGKFINA 2764 E + + +L GDL+ + H ++ G+G ++A Sbjct: 558 TYDEVATCTTIPPTNLVPGDLI-----QPHDGHVVMWTGNGTVVHA 598 >ref|YP_164769.1|orf134 Length = 1062 Score = 40.4 bits (93), Expect = 0.002 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 22/154 (14%) Frame = +2 Query: 2423 DDRAGWIQAGDIS-LAPKTMSISETLEFSKRFLGLPYTWGG--------TSSYGYDCSGF 2575 DD + +GD S LA K SI + L SKR G Y G S DCS F Sbjct: 899 DDESDADDSGDGSALANKAASIGKNL-VSKRGKGSIYDQGAHGDTSALEKSPARGDCSQF 957 Query: 2576 SQMLGRRRGVNMPRDAQ----PQAEWSGVAPVD---------RKDLQAGDLLYFGSSEKK 2716 + G+++ A+ S + + +K ++ GD+++F ++E Sbjct: 958 VYYCYKEAGLDISHGGSWTTWDIAKSSNLKTISSNGSNKSSAKKKMKNGDIIFF-NTEGT 1016 Query: 2717 ITHTGIYMGDGKFINATTHLTPMIRIDDLNDAYW 2818 +H GIY+GDGKF+ + M+ L+++YW Sbjct: 1017 DSHMGIYIGDGKFVGFQSE-PNMLSQASLSNSYW 1049 >ref|YP_024487.1|hypothetical protein Length = 295 Score = 35.4 bits (80), Expect = 0.057 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = +2 Query: 2657 VDRKDLQAGDLLYFGSSEKKITHTGIYMGDGKFIN 2761 VD GD+L+FG S+ T+ GIY+GDG+FI+ Sbjct: 227 VDVSKFIVGDILFFGRSD---TNIGIYVGDGEFIS 258 >ref|NP_116519.1|putative lysin Length = 259 Score = 33.9 bits (76), Expect = 0.17 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 12/107 (11%) Frame = +2 Query: 2531 TWGGTSSYG---YDCSG---FSQMLGRRRGVNMPRDAQPQAEWSG--VAPVDRKDLQAGD 2686 T+ TS G YDCS F+ + G + + SG + + R ++Q GD Sbjct: 19 TYSMTSRMGPSSYDCSSSVFFAMIAGGFLSAGSMGNTETLFGMSGTKLKEISRGEVQRGD 78 Query: 2687 LLYFGS---SEKKITHTGIYMGDGKFINAT-THLTPMIRIDDLNDAY 2815 + G+ S HTGI++ +G FI+ + TH + D NDAY Sbjct: 79 IFISGTPGGSAGSDGHTGIFLSNGSFIHCSYTHNGIAV---DTNDAY 122 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 33.9 bits (76), Expect = 0.17 Identities = 51/159 (32%), Positives = 62/159 (38%), Gaps = 4/159 (2%) Frame = +1 Query: 1816 ARQSAARRAVPHAAGQGRPTQRSGGA---DAPAVFPARLLCAFAVGNARSWARDCWKSAS 1986 +R +A R P A + RP R+ PAV PA CA A A +A A Sbjct: 63 SRPAAGPRRHPPVA-RTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRPRAP 121 Query: 1987 HCDDRLVYITLYARNSRTCPVCXXXXXXXXXXXGGQYVFASER*RRRSQPGDLRREREPD 2166 CD ++ A +RT V V R RRR +P D RR +P Sbjct: 122 ECDRGAHHLRTRAPRTRTRAVPLGPGARVRTP-----VEDRRRTRRRRRP-DPRRRVQPR 175 Query: 2167 RGKGRVGAHPDRG*LHRVDAALRAAAGEGV-RHERPRRR 2280 G VG H RG RV +R A G RPRRR Sbjct: 176 LG---VGVHRRRG-ARRVGRRVRVRARPGPGAARRPRRR 210 >ref|NP_076634.1|lysin Length = 259 Score = 33.5 bits (75), Expect = 0.22 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 12/107 (11%) Frame = +2 Query: 2531 TWGGTSSYG---YDCSG---FSQMLGRRRGVNMPRDAQPQAEWSG--VAPVDRKDLQAGD 2686 T+ TS G YDCS F+ + G + + SG + + R ++Q GD Sbjct: 19 TYSMTSRMGPNSYDCSSSIFFAMIAGGFLSAGSMGNTETLFGMSGTKLKEISRGEVQRGD 78 Query: 2687 LLYFGS---SEKKITHTGIYMGDGKFINAT-THLTPMIRIDDLNDAY 2815 + G+ S HTGI++ +G FI+ + TH + D NDAY Sbjct: 79 VFISGTPGGSAGSDGHTGIFLSNGSFIHCSYTHNGIAV---DTNDAY 122 >ref|NP_076751.1|lysin Length = 259 Score = 33.1 bits (74), Expect = 0.28 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 12/107 (11%) Frame = +2 Query: 2531 TWGGTSSYG---YDCSG---FSQMLGRRRGVNMPRDAQPQAEWSG--VAPVDRKDLQAGD 2686 T+ TS G YDCS F+ + G + + SG + + R ++Q GD Sbjct: 19 TYSMTSRMGPKSYDCSSSVFFAMIAGGFLSEGSMGNTETLFGMSGTKLKEISRGEVQRGD 78 Query: 2687 LLYFGS---SEKKITHTGIYMGDGKFINAT-THLTPMIRIDDLNDAY 2815 + G+ S HTGI++ +G FI+ + TH + D NDAY Sbjct: 79 IFISGTPGGSAGSDGHTGIFLSNGSFIHCSYTHNGIAV---DTNDAY 122 >ref|NP_076695.1|lysin Length = 259 Score = 32.7 bits (73), Expect = 0.37 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 9/95 (9%) Frame = +2 Query: 2558 YDCSG---FSQMLGRRRGVNMPRDAQPQAEWSG--VAPVDRKDLQAGDLLYFGS---SEK 2713 YDCS F+ + G + + SG + + R ++Q GD+ G+ S Sbjct: 31 YDCSSSVFFAMIAGGFLSAGSMGNTETLFGMSGTKLKEISRGEVQRGDIFISGTPGGSAG 90 Query: 2714 KITHTGIYMGDGKFINAT-THLTPMIRIDDLNDAY 2815 HTGI++ +G FI+ + TH + D NDAY Sbjct: 91 SDGHTGIFLSNGSFIHCSYTHNGIAV---DTNDAY 122 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,406,712 Number of Sequences: 14420 Number of extensions: 421024 Number of successful extensions: 1635 Number of sequences better than 0.5: 9 Number of HSP's better than 0.5 without gapping: 1352 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1630 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2355149273 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig47 (3756 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958678.1|Bbp9 33 0.29 ref|NP_996571.1|hypothetical protein predicted by GeneMark 33 0.29 ref|NP_996619.1|hypothetical protein predicted by GeneMark 33 0.29 >ref|NP_958678.1|Bbp9 Length = 508 Score = 32.7 bits (73), Expect = 0.29 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 4/114 (3%) Frame = +3 Query: 66 GSITGNVMDASGQGVPNAKITLTSVNTSGVRSATANEVGVFNLQAVQPDTYNLRI-EQKG 242 G++ GN+ D A I + + N + + AN+ + N D N + Q Sbjct: 301 GTVAGNIDDVQAVAGNAANINVVADNADNINATAANQANI-NAAVGNADNINAAVANQAN 359 Query: 243 FKAY---SRNGIPVSANEHVALGDITLQVGDVTETISVTGESAQVQTSSSEHSA 395 A + N V+ANE G++ V ++ + +V G +A V T + +A Sbjct: 360 INAVVGNANNINAVAANE----GNVNTVVDNLADVQTVAGIAADVSTVAENEAA 409 >ref|NP_996571.1|hypothetical protein predicted by GeneMark Length = 508 Score = 32.7 bits (73), Expect = 0.29 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 4/114 (3%) Frame = +3 Query: 66 GSITGNVMDASGQGVPNAKITLTSVNTSGVRSATANEVGVFNLQAVQPDTYNLRI-EQKG 242 G++ GN+ D A I + + N + + AN+ + N D N + Q Sbjct: 301 GTVAGNIDDVQAVAGNAANINVVADNADNINATAANQANI-NAAVGNADNINAAVANQAN 359 Query: 243 FKAY---SRNGIPVSANEHVALGDITLQVGDVTETISVTGESAQVQTSSSEHSA 395 A + N V+ANE G++ V ++ + +V G +A V T + +A Sbjct: 360 INAVVGNANNINAVAANE----GNVNTVVDNLADVQTVAGIAADVSTVAENEAA 409 >ref|NP_996619.1|hypothetical protein predicted by GeneMark Length = 508 Score = 32.7 bits (73), Expect = 0.29 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 4/114 (3%) Frame = +3 Query: 66 GSITGNVMDASGQGVPNAKITLTSVNTSGVRSATANEVGVFNLQAVQPDTYNLRI-EQKG 242 G++ GN+ D A I + + N + + AN+ + N D N + Q Sbjct: 301 GTVAGNIDDVQAVAGNAANINVVADNADNINATAANQANI-NAAVGNADNINAAVANQAN 359 Query: 243 FKAY---SRNGIPVSANEHVALGDITLQVGDVTETISVTGESAQVQTSSSEHSA 395 A + N V+ANE G++ V ++ + +V G +A V T + +A Sbjct: 360 INAVVGNANNINAVAANE----GNVNTVVDNLADVQTVAGIAADVSTVAENEAA 409 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,269,972 Number of Sequences: 14420 Number of extensions: 453730 Number of successful extensions: 1552 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 1330 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1551 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1833846912 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig48 (2381 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_025041.1|putative transposase B 64 6e-11 ref|NP_859396.1|hypothetical protein 53 1e-07 ref|NP_958229.1|gene 55 protein 45 4e-05 ref|NP_536395.1|ISBt3 transposase subunit protein 40 9e-04 >ref|YP_025041.1|putative transposase B Length = 280 Score = 64.3 bits (155), Expect = 6e-11 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Frame = -3 Query: 2253 EYTDLLKEHGVQISMSRKGNPYDNAKCESFMKTLKYEEVYR-QEYRDLAEAQASVEKFIE 2077 +Y L E ++ S SRKG PYDNA ESF +LK E VY + D A A + +++ Sbjct: 190 DYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVH 249 Query: 2076 KIYNGKRLHSALGYCSPVEFERSLVPLEQTA 1984 YN KR+HS+LGY +P++ E + + + A Sbjct: 250 AFYNRKRIHSSLGYQTPLQVEIATLTSQMAA 280 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 53.1 bits (126), Expect = 1e-07 Identities = 28/81 (34%), Positives = 46/81 (56%) Frame = -3 Query: 2250 YTDLLKEHGVQISMSRKGNPYDNAKCESFMKTLKYEEVYRQEYRDLAEAQASVEKFIEKI 2071 YT+ LKE G+ S G+ YDNA ES K E ++R+ +++ AE + + +++ Sbjct: 205 YTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVD-W 263 Query: 2070 YNGKRLHSALGYCSPVEFERS 2008 YN +RL LG+ P E E++ Sbjct: 264 YNNRRLLGRLGHTPPAEAEKA 284 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 45.1 bits (105), Expect = 4e-05 Identities = 26/81 (32%), Positives = 43/81 (53%) Frame = -3 Query: 2256 QEYTDLLKEHGVQISMSRKGNPYDNAKCESFMKTLKYEEVYRQEYRDLAEAQASVEKFIE 2077 +++ LL + ++ SMSR+GN +DN+ E F ++LK E + Y +EA ++ +I Sbjct: 212 RQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIV 271 Query: 2076 KIYNGKRLHSALGYCSPVEFE 2014 Y+ R H G P E E Sbjct: 272 GYYSALRPHEYNGGLPPNESE 292 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 40.4 bits (93), Expect = 9e-04 Identities = 25/79 (31%), Positives = 37/79 (46%) Frame = -3 Query: 2250 YTDLLKEHGVQISMSRKGNPYDNAKCESFMKTLKYEEVYRQEYRDLAEAQASVEKFIEKI 2071 Y++ L E G++ S+ +G+ YDNA E+ K E ++R+ E+ Sbjct: 189 YSERLAEAGIEPSVGSRGDSYDNALAETINGLYKTELIHRRAPWKTRESVELATLEWVAW 248 Query: 2070 YNGKRLHSALGYCSPVEFE 2014 YN RL LGY P E E Sbjct: 249 YNHHRLMEPLGYIPPAEAE 267 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,345,134 Number of Sequences: 14420 Number of extensions: 295757 Number of successful extensions: 840 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 755 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 838 length of database: 3,019,461 effective HSP length: 95 effective length of database: 1,649,561 effective search space used: 1151393578 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig49 (3267 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,507,942 Number of Sequences: 14420 Number of extensions: 289219 Number of successful extensions: 874 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 805 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 872 length of database: 3,019,461 effective HSP length: 98 effective length of database: 1,606,301 effective search space used: 1590237990 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig50 (3235 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_025041.1|putative transposase B 104 5e-23 ref|NP_859396.1|hypothetical protein 99 3e-21 ref|NP_958229.1|gene 55 protein 91 6e-19 ref|NP_536395.1|ISBt3 transposase subunit protein 87 1e-17 ref|YP_025040.1|putative transposase A 35 0.038 >ref|YP_025041.1|putative transposase B Length = 280 Score = 104 bits (260), Expect = 5e-23 Identities = 71/211 (33%), Positives = 112/211 (53%), Gaps = 9/211 (4%) Frame = -1 Query: 610 MCESLGISRAGYYRFLDPE--KPAPADMDLRDEMHRVALDWPC-YGSRRIVEELKAR--- 449 MC LG+SRA YYR+ P+ K D DL+ + R+ ++ YG +I EL Sbjct: 1 MCRILGVSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQP 60 Query: 448 -GWEVNRKRIQRLMREDNLLCVIKRKFVVATTDSRHGLKVYPNRAAE-MTLTGVDQLWVA 275 + +RI RLM+E ++ V K+ A+ S+ ++ PN + + TG++Q W A Sbjct: 61 LQLRCSPRRISRLMKELDIHSVTVNKWKAASA-SKTKVEQRPNLLKQDFSTTGLNQKWTA 119 Query: 274 DITYIRLEEE-FVYLAVILDAFSRRVIGWHLGETLEVSLTLNALRMALGQRSVSPGPVHH 98 D+TYI+ + + YL+ I+D SRR+IG+ + ++ L L L A+ R+++ + H Sbjct: 120 DMTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIH 179 Query: 97 SDRGVQYASHDNTQLLQDNGIEISMSRKATP 5 +D G QY S D Q L + I S SRK P Sbjct: 180 TDLGSQYTSDDYNQRLTELHIRHSYSRKGCP 210 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 99.0 bits (245), Expect = 3e-21 Identities = 69/200 (34%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Frame = -1 Query: 610 MCESLGISRAGYY-----RFLDPEKPAPADMD--LRDEMHRVALD-WPCYGSRRIVEELK 455 +C L I+ + YY R ++ A A D L+ E+ RV + YG R++ +L Sbjct: 17 VCSELHIAPSTYYHCQQQRHHPDKRSARAQHDDWLKREIQRVYDENHQVYGVRKVWRQLL 76 Query: 454 ARGWEVNRKRIQRLMREDNLLCVIKRKFVVATTDSRHGLKVYPNRAAEMTLTGVDQLWVA 275 G V R + RLM L V++ K V TT SR + + DQLWVA Sbjct: 77 REGIRVARCTVARLMAVMGLAGVLRGK-KVRTTISRKAVAAGDRVNRQFVAERPDQLWVA 135 Query: 274 DITYIRLEEEFVYLAVILDAFSRRVIGWHLGETLEVSLTLNALRMALGQRSVSPGPVHHS 95 D TY+ + FVY+A I+D F+ ++GW + ++E + L+AL AL R S G +HHS Sbjct: 136 DFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPS-GTIHHS 194 Query: 94 DRGVQYASHDNTQLLQDNGI 35 D+G QY S T+ L++ G+ Sbjct: 195 DKGSQYVSLAYTERLKEAGL 214 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 91.3 bits (225), Expect = 6e-19 Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 3/205 (1%) Frame = -1 Query: 619 VVQMCESLGISRAGYYRFLD-PEKPAPADMDLRDEMHRV-ALDWPCYGSRRIVEELKARG 446 VV +C G+ R+ Y + + PEKP LR ++ + + G+R I RG Sbjct: 28 VVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRG 87 Query: 445 WEVNRKRIQRLMREDNLLCVIKRKFVVATTDSRH-GLKVYPNRAAEMTLTGVDQLWVADI 269 +++ R RLM+E L+ + H + Y R + +T +Q+W D+ Sbjct: 88 YQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLER--QFAVTEPNQVWCGDV 145 Query: 268 TYIRLEEEFVYLAVILDAFSRRVIGWHLGETLEVSLTLNALRMALGQRSVSPGPVHHSDR 89 TYI + + YLAV+LD F+R+ +GW + + + LT+ AL MA R G + HSD+ Sbjct: 146 TYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQ 205 Query: 88 GVQYASHDNTQLLQDNGIEISMSRK 14 G Y S QLL I SMSR+ Sbjct: 206 GSHYTSRQFRQLLWRYQIRQSMSRR 230 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 87.0 bits (214), Expect = 1e-17 Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Frame = -1 Query: 592 ISRAGYYRFL----DPEKP---APADMDLRDEMHRV-ALDWPCYGSRRIVEELKARGWEV 437 I+ +GY R DP K A D L+ E+ RV + YG ++ +++ G V Sbjct: 3 IAPSGYRRHAAQLRDPSKRCARAKRDELLQPEIKRVWQANMQVYGVPKVWKQMNREGITV 62 Query: 436 NRKRIQRLMREDNLLCVIKRKFVVATTDSRHGLKVYPNRAAEMTLTGVDQLWVADITYIR 257 R + RLM+ L ++ K V T + + +QLWV+D TY+ Sbjct: 63 ARCTVGRLMKLQGLRGAVRGKRVRTTITDVTAPRPLDRVNRQFKADRPNQLWVSDFTYVS 122 Query: 256 LEEEFVYLAVILDAFSRRVIGWHLGETLEVSLTLNALRMALGQRSVSPGP----VHHSDR 89 + ++Y+A ++D F+RR++GW + ++ L+AL AL R PG +HHSDR Sbjct: 123 TWQGWLYVAFVIDVFARRIVGWRVSSSMTTDFVLDALEQALYAR--QPGEDGTLIHHSDR 180 Query: 88 GVQYASHDNTQLLQDNGIEISMSRK 14 G QY S ++ L + GIE S+ + Sbjct: 181 GSQYVSIRYSERLAEAGIEPSVGSR 205 >ref|YP_025040.1|putative transposase A Length = 83 Score = 35.4 bits (80), Expect = 0.038 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Frame = -2 Query: 981 MTARRKFTKEFKQAAVSRLQAGQSLSEVARALEVHPADIHRWRRELQEHGERAFQGSGKK 802 MT+R + KEFKQ ++ + G+S +++AR + + +H+W QG K Sbjct: 1 MTSR--YDKEFKQNIINLYKQGESAAQMAREYGIGYSTVHKW-----------IQGQAKT 47 Query: 801 RAEET--RVAELERKVGRQALEIDFLKGAL 718 ++ ++ + +E+++ + E + LK AL Sbjct: 48 QSGKSPDEIKAMEKRLASLSEENEILKKAL 77 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,366,315 Number of Sequences: 14420 Number of extensions: 379547 Number of successful extensions: 1231 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 1072 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1223 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1588306580 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig51 (2772 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817502.1|gp53 69 3e-12 ref|NP_061531.1|integrase 49 4e-06 ref|NP_817718.1|gp41 41 8e-04 ref|NP_665963.1|putative site specific recombinase Int2 40 0.001 ref|NP_046786.1|Int 39 0.002 ref|NP_511007.1|integrase 39 0.004 ref|NP_996675.1|integrase 37 0.015 ref|NP_076752.1|integrase 36 0.019 ref|YP_164382.1|integrase 36 0.019 ref|NP_116524.1|integrase 36 0.025 ref|NP_695147.1|integrase 36 0.025 ref|NP_076573.1|integrase 36 0.025 ref|NP_695029.1|Integrase 35 0.033 ref|NP_777346.1|hypothetical protein 35 0.033 ref|NP_862840.1|gp1 35 0.043 ref|NP_680502.1|integrase 34 0.073 ref|NP_108680.1|integrase 33 0.12 ref|NP_040813.1|integrase 33 0.16 ref|NP_624303.1|integrase fragment 33 0.21 ref|NP_958556.1|putative integrase 32 0.28 ref|NP_050109.1|integrase 32 0.28 ref|YP_024945.1|gp25 32 0.28 ref|NP_543053.1|putative integrase 32 0.28 ref|NP_859328.1|hypothetical protein 32 0.36 ref|NP_612960.1|hypothetical protein 32 0.36 ref|NP_859162.1|hypothetical protein 32 0.36 ref|NP_050500.1|integrase 32 0.36 ref|NP_536628.1|Int 32 0.36 ref|NP_049461.1|integrase 32 0.36 ref|NP_037686.1|integrase 32 0.47 ref|NP_852561.1|DNA integration 32 0.47 ref|NP_076696.1|integrase 32 0.47 >ref|NP_817502.1|gp53 Length = 293 Score = 68.6 bits (166), Expect = 3e-12 Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 3/207 (1%) Frame = -3 Query: 2407 NLRLTAIRSFFRYASLEAPAHSGIIQRVLAIPNQRQRRALVGFLTRPEIEALLAAPNRTQ 2228 +LRLTA++ F R+ + E + + +L + + + +V L+ ++AL+A Sbjct: 70 HLRLTAVKQFMRWVADEEGVN---VDGLLVVRPPKLDQKVVKHLSDRAVQALVATCAGNT 126 Query: 2227 WLGRRDHAFLLTAVQTGLRLSEMTGLRQEDVSLGAGAHVRCRGKGRKERCTPLAKPTAAV 2048 + RRD A ++ +TG+R +EM L EDVSL RGKG K R + AA Sbjct: 127 FRDRRDKALIVLFTETGIRAAEMLALDVEDVSLVDCQLTVRRGKGAKGRRVKYSPMCAAT 186 Query: 2047 LKAWIREQ---GRGDSKTLFPSTRGGPLSADGVQHLLARHVAQARKHCASLRKKRVSPHV 1877 + ++R + G G L+ GG LS G++ L R A PH Sbjct: 187 IDKYLRARRRAGHGSEGPLWIGL-GGRLSYTGMKSSLKRRADDA-------GVPGFHPHR 238 Query: 1876 LRHAAAMELLQGGVDRAVIALWLGHES 1796 LRH +A+ L+ G A + G +S Sbjct: 239 LRHTSAVRWLKAGGSEAGLMAQAGWQS 265 Score = 41.6 bits (96), Expect = 5e-04 Identities = 55/249 (22%), Positives = 100/249 (40%), Gaps = 13/249 (5%) Frame = +2 Query: 848 VTRLRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDKLGPEHLRQYQAHLFRDKH 1027 + L+ L EL+ + T++ Y V+ + + +L P A + Sbjct: 6 LAELKDSWLMELRAARKSAETIRAYGGSVEGYLNFCVE--GELAPLEKASLLAWVNSMAS 63 Query: 1028 LNAGTVQQYVAALRFFFNKTLKRHYLLDD----IPMPKRHRKMPEILSPDEVALLIGS-A 1192 L TV + A++ F + D + PK +K+ + LS V L+ + A Sbjct: 64 LQPATVHLRLTAVKQFMRWVADEEGVNVDGLLVVRPPKLDQKVVKHLSDRAVQALVATCA 123 Query: 1193 SNLLH----QTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGGHDRDVPLSPRL 1360 N + +++ TG+R AE+ L D+ + +R+GKG R V SP Sbjct: 124 GNTFRDRRDKALIVLFTETGIRAAEMLALDVEDVSLVDCQLTVRRGKGAKGRRVKYSPMC 183 Query: 1361 LETLRVYWRWMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQR----AGITKHVSPH 1528 T+ Y R + + G + W + + ++ + + + +R AG+ PH Sbjct: 184 AATIDKYLRARRRAGHGSEGPL--W---IGLGGRLSYTGMKSSLKRRADDAGV-PGFHPH 237 Query: 1529 TLRHYAASR 1555 LRH +A R Sbjct: 238 RLRHTSAVR 246 >ref|NP_061531.1|integrase Length = 369 Score = 48.5 bits (114), Expect = 4e-06 Identities = 59/196 (30%), Positives = 80/196 (40%), Gaps = 14/196 (7%) Frame = -3 Query: 2320 AIPNQ---RQRRALVG---FLTRPEIEALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEM 2159 A+PN R+ R G +LTR E+EAL A R Q G F+ AV TG R EM Sbjct: 143 ALPNPVKGRKMREAEGRDRWLTRAEVEALCRAA-RGQKFGPMLEDFIRLAVNTGCRREEM 201 Query: 2158 TGLRQEDVSLG------AGAHVRCRGKGRKERCTPLAKPTAAVLKAWI--REQGRGDSKT 2003 GL V +H K K R P+ + A LK + R + + Sbjct: 202 LGLEWRRVDFANRLIYLEASHT----KAGKRRSIPINEGAMAALKRRMAFRSETSPECPW 257 Query: 2002 LFPSTRGGPLSADGVQHLLARHVAQARKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAV 1823 +F G D V L A ++ C + + + H LRH A L+ GV A Sbjct: 258 VFARANG-----DRVISLSAGF----KQACQAAKIADFTIHDLRHTCAAWLVSAGVPLAD 308 Query: 1822 IALWLGHESVETTQIY 1775 + LGH +V T+ Y Sbjct: 309 VRDLLGHSTVAMTERY 324 >ref|NP_817718.1|gp41 Length = 400 Score = 40.8 bits (94), Expect = 8e-04 Identities = 53/184 (28%), Positives = 74/184 (40%), Gaps = 23/184 (12%) Frame = -3 Query: 2278 LTRPEIEALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRQEDVSLGAGA----HV 2111 LT E+E LLA + +A G RL+E++GLR DV L A + Sbjct: 195 LTESEVETLLAH------IAGDRYAIAWELALAGFRLAEISGLRWCDVDLDARTVTVQNT 248 Query: 2110 RC-RGKGRKERCT---------PLAKPTAAVLKAWIREQGRGD---------SKTLFPST 1988 R RGK R E+ PL A KA + Q S + + Sbjct: 249 RLQRGKKRIEKTPKSRASRRELPLPDDLFAAFKAARKIQAADQLRLGEAYEASGYVVVNE 308 Query: 1987 RGGPLSADGVQHLLARHVAQARKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWL 1808 G PL+ + +++ AR + A LR R+ H RH + GV A+I+ WL Sbjct: 309 AGTPLTPNAIENRWARVLK-----AAGLRHVRL--HDARHTCGTLMHLRGVPTALISAWL 361 Query: 1807 GHES 1796 GH S Sbjct: 362 GHAS 365 >ref|NP_665963.1|putative site specific recombinase Int2 Length = 199 Score = 40.0 bits (92), Expect = 0.001 Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 26/162 (16%) Frame = +2 Query: 1154 LSPDEVALLIGSASNLLH----QTMLMTLYSTGVRRAELCRLKSA--DIDSQRMMVHIRQ 1315 L PD+V + + H +L LY TG+RRAEL + A D+D + + + R Sbjct: 10 LKPDQVEAMRAAVLEGSHPERDNAILTLLYDTGLRRAELSGVDRAMLDVDDELLRIPSRI 69 Query: 1316 GKG-GHDRDVPLSP---------RLLETLRVYWRWMKPKTYLFPGTVNNWRADVPITTKV 1465 KG +DRD + R + TL Y LFP ++ ++ K Sbjct: 70 QKGYPNDRDPRPATFELDRGENLRTIATLNAYLEVRDDVDALFPSQMS-----TRMSPKG 124 Query: 1466 PWEACRQAAQRAGI----------TKHVSPHTLRHYAASRTM 1561 + ++AA+RA I VS HTLRH A R + Sbjct: 125 VNDVVKRAARRADIRPFTFEGRGGPDDVSAHTLRHSLAWRML 166 Score = 36.6 bits (83), Expect = 0.015 Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 21/190 (11%) Frame = -3 Query: 2287 VGFLTRPEIEALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRQ-----EDVSLGA 2123 V +L ++EA+ AA RD+A L TGLR +E++G+ + +D L Sbjct: 7 VHWLKPDQVEAMRAAVLEGSH-PERDNAILTLLYDTGLRRAELSGVDRAMLDVDDELLRI 65 Query: 2122 GAHVRCRGKGRKERCTPLAKP----------TAAVLKAWIREQGRGDSKTLFPSTRGGPL 1973 + ++ KG P T A L A++ + R D LFPS + Sbjct: 66 PSRIQ---KGYPNDRDPRPATFELDRGENLRTIATLNAYL--EVRDDVDALFPSQMSTRM 120 Query: 1972 SADGVQHLLARHVAQARKHCASLRKKR----VSPHVLRHAAAMELLQGGVDRAV--IALW 1811 S GV ++ R +A + + VS H LRH+ A +L+ + + Sbjct: 121 SPKGVNDVVKRAARRADIRPFTFEGRGGPDDVSAHTLRHSLAWRMLRVETGNILYDVRNR 180 Query: 1810 LGHESVETTQ 1781 L H S++TT+ Sbjct: 181 LRHRSLQTTE 190 >ref|NP_046786.1|Int Length = 337 Score = 39.3 bits (90), Expect = 0.002 Identities = 56/222 (25%), Positives = 86/222 (38%), Gaps = 2/222 (0%) Frame = -3 Query: 2434 RRHNGAR--SRNLRLTAIRSFFRYASLEAPAHSGIIQRVLAIPNQRQRRALVGFLTRPEI 2261 RR G + S N LT I F A +EA G + ++ + G+LT+ EI Sbjct: 113 RRSQGIKPSSINRDLTCISGMFT-ALIEAELFFGE-HPIRGTKRLKEEKPETGYLTQEEI 170 Query: 2260 EALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRQEDVSLGAGAHVRCRGKGRKER 2081 LLAA L + + + TG R E L+ E++ V+ K K R Sbjct: 171 ALLLAA------LDGDNKKIAILCLSTGARWGEAARLKAENIIHNRVTFVKT--KTNKPR 222 Query: 2080 CTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSADGVQHLLARHVAQARKHCASLR 1901 P+++ A + I + RG LFP + R +A K + Sbjct: 223 TVPISEAVAKM----IADNKRG---FLFPDA----------DYPRFRRTMKAIKPDLPMG 265 Query: 1900 KKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIY 1775 + + H LRH+ A + G + LGH +E T +Y Sbjct: 266 Q---ATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVY 304 >ref|NP_511007.1|integrase Length = 384 Score = 38.5 bits (88), Expect = 0.004 Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 20/164 (12%) Frame = -3 Query: 2206 AFLLTAVQTGLRLSEMTGLRQEDVSLGAGAHVRCRG------------KGRKERCTPLAK 2063 A + AVQTG+R E+ L ++D++ + + K +K R + Sbjct: 188 AVIFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTFIDTKTKKSRVIYIDN 247 Query: 2062 PTAAVLKAWI-------REQG-RGDSKTLFPSTRGGPLSADGVQHLLARHVAQARKHCAS 1907 TA L +++ +E + LF + P+ L +K C++ Sbjct: 248 STAQYLHSYLNWHTDYMKEHAIKNPLMLLFITYHNKPVDNASCNKAL-------KKICST 300 Query: 1906 LRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIY 1775 + + V+ H LRH ++ G+D +A LGH+ + TT Y Sbjct: 301 INSEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKY 344 >ref|NP_996675.1|integrase Length = 374 Score = 36.6 bits (83), Expect = 0.015 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 17/151 (11%) Frame = -3 Query: 2182 TGLRLSEMTGLRQEDVSLGAGAHVRCRGKGR-KERCTPLAKPT--AAVLKAWIREQG--- 2021 TG+R SE GL +D+ ++CR + + KP A + I ++ Sbjct: 200 TGMRASEAFGLVWDDIDFNNNT-IKCRRTWNYRNKVGGFKKPKTDAGIRDIVIDDESMQL 258 Query: 2020 ----RGDSKTLFPSTRGGPLSADGVQHLLARHVAQARKHCA---SLRKKRVSP----HVL 1874 R KTLF S P+ H + + + +L+K ++S H L Sbjct: 259 LKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLEHALKKLKISTPLTVHGL 318 Query: 1873 RHAAAMELLQGGVDRAVIALWLGHESVETTQ 1781 RH A LL GVD ++ LGH SV TQ Sbjct: 319 RHTHASVLLYHGVDIMTVSKRLGHASVAITQ 349 >ref|NP_076752.1|integrase Length = 394 Score = 36.2 bits (82), Expect = 0.019 Identities = 40/153 (26%), Positives = 58/153 (37%), Gaps = 18/153 (11%) Frame = -3 Query: 2188 VQTGLRLSEMTGLRQEDVSLGAG----------AHVRCRGKGRKE-RCTPLAKPTAAVLK 2042 V +GLR+ E L D+ G A ++ K K R + VLK Sbjct: 224 VASGLRIGEAVALSWSDIDFKTGSVSVSKTTLRAVIQSTPKTDKSNRIVLIDSKAVEVLK 283 Query: 2041 AWIREQ-------GRGDSKTLFPSTRGGPLSADGVQHLLARHVAQARKHCASLRKKRVSP 1883 W Q G+G + +FP+ GG L ++ L K + + +V Sbjct: 284 HWELFQAKYFMSIGKGKQELVFPNRTGGVLDYQTMRPFLI-------KWLRACQLPQVGF 336 Query: 1882 HVLRHAAAMELLQGGVDRAVIALWLGHESVETT 1784 H RH+ A LL V I LGH S++ T Sbjct: 337 HGFRHSHASLLLNADVPYKEIQERLGHASIKMT 369 >ref|YP_164382.1|integrase Length = 369 Score = 36.2 bits (82), Expect = 0.019 Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 17/159 (10%) Frame = -3 Query: 2209 HAFLLTAVQTGLRLSEMTGLRQEDVSLGAGAHVRCRGKGRKERCTPLAKPTA---AVLKA 2039 H +L A+ +G+R +E+ GL++ED + G ++ PT +V K Sbjct: 190 HYIILLALTSGMRFAEIVGLKREDFDFKQNTISINKTWGYTKKMHEGFGPTKNEQSVRKI 249 Query: 2038 WIREQGRGDSKTLF--------------PSTRGGPLSADGVQHLLARHVAQARKHCASLR 1901 + Q LF PS++ +S LL + + L+ Sbjct: 250 KMDVQTMKAFNNLFDMLPENIHQLVFYSPSSKYKVISNGNANKLLKSLLGE-------LK 302 Query: 1900 KKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETT 1784 + +S H LRH A LL GV ++ LGH +ETT Sbjct: 303 IEPISMHGLRHTHASVLLYKGVSIYYVSERLGHADIETT 341 >ref|NP_116524.1|integrase Length = 374 Score = 35.8 bits (81), Expect = 0.025 Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 17/151 (11%) Frame = -3 Query: 2182 TGLRLSEMTGLRQEDVSLGAGAHVRCRGKGR-KERCTPLAKPT--AAVLKAWIREQG--- 2021 TG+R SE GL +D+ ++CR + + KP A + I ++ Sbjct: 200 TGMRASEAFGLVWDDIDFNNNT-IKCRRTWNYRNKVGGFKKPKTDAGIRDIVIDDESMQL 258 Query: 2020 ----RGDSKTLFPSTRGGPLSADGVQHLLARHVAQARKHCA---SLRKKRVSP----HVL 1874 R KTLF S P+ H + + + +L+K +S H L Sbjct: 259 LKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLDHALKKLNISTPLTIHGL 318 Query: 1873 RHAAAMELLQGGVDRAVIALWLGHESVETTQ 1781 RH A LL GVD ++ LGH SV TQ Sbjct: 319 RHTHASVLLYHGVDIMTVSKRLGHASVAITQ 349 >ref|NP_695147.1|integrase Length = 391 Score = 35.8 bits (81), Expect = 0.025 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Frame = -3 Query: 2008 KTLFPSTRGGPLSADGVQHLLARHVAQ---ARKHCASLRKKRVSPHVLRHAAAMELLQGG 1838 K +F + G PLS + + +L Q ++ + + +K + H LRH A LL G Sbjct: 283 KLVFSKSDGIPLSNNAINKMLRSLCVQNAVVARNSSGVIQKWYTCHALRHTHASLLLYEG 342 Query: 1837 VDRAVIALWLGHESVETT 1784 D + ++ LGH+ + TT Sbjct: 343 RDISYVSKRLGHKDIMTT 360 >ref|NP_076573.1|integrase Length = 374 Score = 35.8 bits (81), Expect = 0.025 Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 17/151 (11%) Frame = -3 Query: 2182 TGLRLSEMTGLRQEDVSLGAGAHVRCRGKGR-KERCTPLAKPT--AAVLKAWIREQG--- 2021 TG+R SE GL +D+ ++CR + + KP A + I ++ Sbjct: 200 TGMRASEAFGLVWDDIDFNNNT-IKCRRTWNYRNKVGGFKKPKTDAGIRDIVIDDESMQL 258 Query: 2020 ----RGDSKTLFPSTRGGPLSADGVQHLLARHVAQARKHCA---SLRKKRVSP----HVL 1874 R KTLF S P+ H + + + +L+K +S H L Sbjct: 259 LKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLDHALKKLNISTPLTVHGL 318 Query: 1873 RHAAAMELLQGGVDRAVIALWLGHESVETTQ 1781 RH A LL GVD ++ LGH SV TQ Sbjct: 319 RHTHASVLLYHGVDIMTVSKRLGHASVAITQ 349 >ref|NP_695029.1|Integrase Length = 374 Score = 35.4 bits (80), Expect = 0.033 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 17/151 (11%) Frame = -3 Query: 2182 TGLRLSEMTGLRQEDVSLGAGAHVRC-RGKGRKERCTPLAKPT--AAVLKAWIREQG--- 2021 TG+R SE GL +D+ ++C R + + KP A + I ++ Sbjct: 200 TGMRASEAFGLVWDDIKFDNNV-IKCHRTWNYRNKVGGFKKPKTDAGIRDIVIDDESMQL 258 Query: 2020 ----RGDSKTLFPSTRGGPLSADGVQHLLARHVAQARKHCA---SLRKKRVSP----HVL 1874 R KTLF S P+ H + + + +L+K ++S H L Sbjct: 259 LKYFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLEHALKKLKISTPLTVHGL 318 Query: 1873 RHAAAMELLQGGVDRAVIALWLGHESVETTQ 1781 RH A LL GVD ++ LGH SV TQ Sbjct: 319 RHTHASVLLYHGVDIMTVSKRLGHASVAITQ 349 >ref|NP_777346.1|hypothetical protein Length = 395 Score = 35.4 bits (80), Expect = 0.033 Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 21/170 (12%) Frame = -3 Query: 2221 GRRDHAFLLTAVQTGLRLSEMTGLRQEDVSLGAGAHVRCRGKGRKERCTPLAK------- 2063 G R + + T LR E LR ED G + R R++ AK Sbjct: 190 GHRLYPLFALMLATRLRPGEALALRWEDWE---GDVLHVRHTLRRDGTLGPAKTPGSVAP 246 Query: 2062 ----PTAAVLKAWIREQGRGDSKT---------LFPSTRGGPLSADGVQHLLARHVAQAR 1922 P L AW RE+ + + +FPS++G PL + + A + Q + Sbjct: 247 IYLDPDTQALLAWWRERLEEEKASTPDWQDHGLMFPSSKGTPLEYNNFKR--AFYALQEK 304 Query: 1921 KHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGH-ESVETTQIY 1775 + R++PH LRH L+ G+ V+A L H + T ++Y Sbjct: 305 AGVS-----RITPHGLRHTYTSLALRAGLPPKVVAARLRHADPTFTVKVY 349 >ref|NP_862840.1|gp1 Length = 375 Score = 35.0 bits (79), Expect = 0.043 Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 26/176 (14%) Frame = +2 Query: 1091 KRHYLLDDIPMPKRHRKMPEILSPDEVALLIGSASNLLHQT----MLMTLYSTGVRRAEL 1258 K+ L+DI +K + L+ E+ LI + +N +Q M+ L TG+R EL Sbjct: 161 KKPETLEDI-----EKKRNKFLTMQEIKALIDALNNKPYQQKYADMVTVLALTGMRYGEL 215 Query: 1259 CRLKSADIDSQRMMVHIRQGKGGHD-----RDVPLSPRLLETLRVY-------------- 1381 L+ +ID + + I G D + +P + + + T+ V Sbjct: 216 TALQLKNIDFENNKIEIT---GNFDSINKIKTLPKTAKSIRTILVSDAVIKAIQRQVVRL 272 Query: 1382 ---WRWMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRH 1540 ++ +K Y+F + W + PIT + ++ +AGI K++S H RH Sbjct: 273 TERYQPLKDDDYIF--CLEVWNS--PITLPSFIQIIKKYGAKAGIEKNLSSHIFRH 324 >ref|NP_680502.1|integrase Length = 385 Score = 34.3 bits (77), Expect = 0.073 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = -3 Query: 2002 LFPSTRGGPLSADGVQHLLARHVAQARKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAV 1823 LF G P+ ++GV L R A KH + + H LRH LL G+D Sbjct: 295 LFLGPTGLPIYSNGVNKELRR----ALKHLG-IERPGFGFHGLRHTHGSYLLYKGLDIQY 349 Query: 1822 IALWLGHESVE-TTQIY 1775 ++ LGHE+V TT+IY Sbjct: 350 VSHRLGHENVGITTKIY 366 >ref|NP_108680.1|integrase Length = 374 Score = 33.5 bits (75), Expect = 0.12 Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 17/151 (11%) Frame = -3 Query: 2182 TGLRLSEMTGLRQEDVSLGAGAHVRCRGKGR-KERCTPLAKPT--AAVLKAWIREQG--- 2021 T +R SE GL +D+ ++CR + + KP A + I ++ Sbjct: 200 TSMRASEAFGLVWDDIDFNNNT-IKCRRTWNYRNKVGGFKKPKTDAGIRDIVIDDESMQL 258 Query: 2020 ----RGDSKTLFPSTRGGPLSADGVQHLLARHVAQARKHCA---SLRKKRVSP----HVL 1874 R KTLF S P+ H + + + +L+K +S H L Sbjct: 259 LKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLDHALKKLNISTPLTVHGL 318 Query: 1873 RHAAAMELLQGGVDRAVIALWLGHESVETTQ 1781 RH A LL GVD ++ LGH SV TQ Sbjct: 319 RHTHASVLLYHGVDIMTVSKRLGHASVAITQ 349 >ref|NP_040813.1|integrase Length = 289 Score = 33.1 bits (74), Expect = 0.16 Identities = 38/194 (19%), Positives = 82/194 (42%), Gaps = 15/194 (7%) Frame = +2 Query: 878 ELQRRNYAQSTVKGYLRIVQDFAEHFH----QQPDKLGPEHLRQYQAHLFRDKHLNAGTV 1045 EL +Y ST + + RIVQ + ++ +K+ + +L H ++ Sbjct: 12 ELTLASYEDSTNRYHYRIVQHLIKGLKYIKVKKLEKVDITIGYKLIDYLKNHTHNGNNSI 71 Query: 1046 QQYVAALRFFFNKTLKRHYLLD----DIPMPKRHRKMPEILSPDEVALLI-------GSA 1192 ++ + LR + +HY + D+P K E D++ L++ S Sbjct: 72 KKIINYLR-----KVMQHYRITTSIIDLPHLPNDTKPFERFYHDDLELIMTYTKNLNSSK 126 Query: 1193 SNLLHQTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGGHDRDVPLSPRLLETL 1372 +++ +++ + L +G+R +E +K +D+D + ++ + K R P S L+ + Sbjct: 127 NSITYKSFIRLLLDSGLRVSEALNIKISDMDFKNKVIRVLSSKTRKQRYAPFSSFSLKYI 186 Query: 1373 RVYWRWMKPKTYLF 1414 + + YLF Sbjct: 187 KELIEVNPKRDYLF 200 >ref|NP_624303.1|integrase fragment Length = 112 Score = 32.7 bits (73), Expect = 0.21 Identities = 20/65 (30%), Positives = 34/65 (52%) Frame = -3 Query: 1975 LSADGVQHLLARHVAQARKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHES 1796 ++ + + H+L + + KH + K V+ H LRH+ A LL GV ++ LGH + Sbjct: 30 VTREAINHVLTKDL----KH---IEAKNVTFHALRHSHASYLLSKGVSIQYVSERLGHSN 82 Query: 1795 VETTQ 1781 V T+ Sbjct: 83 VGITE 87 >ref|NP_958556.1|putative integrase Length = 391 Score = 32.3 bits (72), Expect = 0.28 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 12/166 (7%) Frame = +2 Query: 824 FVGHKEVPVTRLRKMMLEELQRRNYAQSTVKGYL----RIVQDFAEHFHQQPDKLGPEHL 991 FV K++ V+ LR + E + + + K ++ DF +Q DK+ L Sbjct: 64 FVKQKQIKVSELRDLWFENYKTQVKESTANKNKQVFDNHVIPDFG---NQYVDKITVAEL 120 Query: 992 RQY------QAHLFRDKHLNAGTVQQYVAALRFFFNKTLKRHYLLDDIPMPKRHRKMPEI 1153 +++ Q +RD + +Y L + LKR + P+R + + Sbjct: 121 QKWADRKAKQIVKYRDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEH-NV 179 Query: 1154 LSPDEVA--LLIGSASNLLHQTMLMTLYSTGVRRAELCRLKSADID 1285 + +E+ L + L+ T L +TG+R++E L DID Sbjct: 180 YTREELNQFLEVAKEYGLVQYTYFKLLSATGLRKSEALALTWQDID 225 >ref|NP_050109.1|integrase Length = 385 Score = 32.3 bits (72), Expect = 0.28 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 3/105 (2%) Frame = -3 Query: 2086 ERCTPLAKPTAAVLKAWIREQGRGDSKTLFP---STRGGPLSADGVQHLLARHVAQARKH 1916 +R L K + K + + Q D LF S GP++ V L V + + Sbjct: 267 QRTIVLPKEAVVIYKEFSKGQNSNDF--LFHNKYSNTNGPINTSAVSRFLREFVNEQKW- 323 Query: 1915 CASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQ 1781 KK+ + H+ RH +L + G ++I +GH + + T+ Sbjct: 324 -----KKKATSHIFRHTHVSKLAEEGYPLSLITDRVGHANSDITR 363 >ref|YP_024945.1|gp25 Length = 427 Score = 32.3 bits (72), Expect = 0.28 Identities = 51/214 (23%), Positives = 86/214 (40%), Gaps = 14/214 (6%) Frame = -3 Query: 2398 LTAIRSFFRYAS----LEAPAHSGIIQRVLAIPNQRQRRALVGFLTRPEIEALLAAPNRT 2231 LT + F +A + A +G+ ++ AI R + LT E+ +L P Sbjct: 175 LTTVTQLFDHACGRKIIAANPCAGV--KLTAIMGARPKVRPRVMLTVEELAKIL--PGID 230 Query: 2230 QWLGRRDHAFLLTAVQTGLRLSEMTGLRQEDVSLGAGAHVRCRGKGRKERCTPLAKPTAA 2051 +GR + L + T +R +E+ R+E + L G+ + K R L P Sbjct: 231 DTIGRANGLMLRVLLATCVRTNELVKARKELIDLQRGSWF-VADETVKTRNGFLV-PLVP 288 Query: 2050 VLKAWIRE--QGRGDSKTLFPSTRGGPLSADGVQHLLARHVAQARKHCA--------SLR 1901 ++ +WI E GDS L P+ RG ++ L HV A L Sbjct: 289 LVSSWIEELIALSGDSPWLLPA-RG----QQRIKRLGNTHVGNTTLWAAIDRAFLRGDLE 343 Query: 1900 KKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHE 1799 +R +PH R A ++ G+ + + + L H+ Sbjct: 344 ARRFTPHDTRSTAKGHMMNMGIPKEITEIALNHK 377 >ref|NP_543053.1|putative integrase Length = 437 Score = 32.3 bits (72), Expect = 0.28 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 4/96 (4%) Frame = +2 Query: 1040 TVQQYVAALRFFFNKTLKRHYL----LDDIPMPKRHRKMPEILSPDEVALLIGSASNLLH 1207 TV Y+ + F YL + I K+ R P+ L+ DE LI + + Sbjct: 160 TVNYYMTTIAGMFQFAADHGYLEANPFEGIKPLKKARAEPDPLTRDEFIRLIDACRHQQT 219 Query: 1208 QTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQ 1315 + + TG+R EL L DID + + IR+ Sbjct: 220 KNLWSLAVYTGMRHGELVSLAWEDIDLKAGTITIRR 255 >ref|NP_859328.1|hypothetical protein Length = 444 Score = 32.0 bits (71), Expect = 0.36 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 4/96 (4%) Frame = +2 Query: 1040 TVQQYVAALRFFFNKTLKRHYL----LDDIPMPKRHRKMPEILSPDEVALLIGSASNLLH 1207 TV Y+ F+ + YL + I ++ + +P+ L+ DE + LI + + Sbjct: 168 TVNYYMTTTAGMFSFAAENGYLEKNPFNSITPLRKSKPVPDPLTRDEFSRLIDACHHQQT 227 Query: 1208 QTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQ 1315 + + TG+R E+ L DID + + +R+ Sbjct: 228 KNLWTVAVFTGMRHGEIAALAWEDIDLKAGTITVRR 263 >ref|NP_612960.1|hypothetical protein Length = 444 Score = 32.0 bits (71), Expect = 0.36 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 4/96 (4%) Frame = +2 Query: 1040 TVQQYVAALRFFFNKTLKRHYL----LDDIPMPKRHRKMPEILSPDEVALLIGSASNLLH 1207 TV Y+ F+ + YL + I ++ + +P+ L+ DE + LI + + Sbjct: 168 TVNYYMTTTAGMFSFAAENGYLEKNPFNSITPLRKSKPVPDPLTRDEFSRLIDACHHQQT 227 Query: 1208 QTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQ 1315 + + TG+R E+ L DID + + +R+ Sbjct: 228 KNLWTVAVFTGMRHGEIAALAWEDIDLKAGTITVRR 263 >ref|NP_859162.1|hypothetical protein Length = 444 Score = 32.0 bits (71), Expect = 0.36 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 4/96 (4%) Frame = +2 Query: 1040 TVQQYVAALRFFFNKTLKRHYL----LDDIPMPKRHRKMPEILSPDEVALLIGSASNLLH 1207 TV Y+ F+ + YL + I ++ + +P+ L+ DE + LI + + Sbjct: 168 TVNYYMTTTAGMFSFAAENGYLEKNPFNSITPLRKSKPVPDPLTRDEFSRLIDACHHQQT 227 Query: 1208 QTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQ 1315 + + TG+R E+ L DID + + +R+ Sbjct: 228 KNLWTVAVFTGMRHGEIAALAWEDIDLKAGTITVRR 263 >ref|NP_050500.1|integrase Length = 444 Score = 32.0 bits (71), Expect = 0.36 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 4/96 (4%) Frame = +2 Query: 1040 TVQQYVAALRFFFNKTLKRHYL----LDDIPMPKRHRKMPEILSPDEVALLIGSASNLLH 1207 TV Y+ F+ + YL + I ++ + +P+ L+ DE + LI + + Sbjct: 168 TVNYYMTTTAGMFSFAAENGYLEKNPFNSITPLRKSKPVPDPLTRDEFSRLIDACHHQQT 227 Query: 1208 QTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQ 1315 + + TG+R E+ L DID + + +R+ Sbjct: 228 KNLWTVAVFTGMRHGEIAALAWEDIDLKAGTITVRR 263 >ref|NP_536628.1|Int Length = 345 Score = 32.0 bits (71), Expect = 0.36 Identities = 31/136 (22%), Positives = 54/136 (39%) Frame = -3 Query: 2182 TGLRLSEMTGLRQEDVSLGAGAHVRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKT 2003 TG R+SE L + +S V +GK + R P+++ + S Sbjct: 211 TGARISEALSLERSQISEFKLTFVETKGK--RIRSVPISENLYKEIML-----ASSSSTK 263 Query: 2002 LFPSTRGGPLSADGVQHLLARHVAQARKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAV 1823 +F +T G + ++ L +V + + + HVLRH A + D + Sbjct: 264 IFSTTYGS--AHRYIKKALPDYVPEGQ-----------ATHVLRHTFATHFMMNRGDILI 310 Query: 1822 IALWLGHESVETTQIY 1775 + LGH+ +E T Y Sbjct: 311 LQRILGHQKIEQTMAY 326 >ref|NP_049461.1|integrase Length = 444 Score = 32.0 bits (71), Expect = 0.36 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 4/96 (4%) Frame = +2 Query: 1040 TVQQYVAALRFFFNKTLKRHYL----LDDIPMPKRHRKMPEILSPDEVALLIGSASNLLH 1207 TV Y+ F+ + YL + I ++ + +P+ L+ DE + LI + + Sbjct: 168 TVNYYMTTTAGMFSFAAENGYLEKNPFNSITPLRKSKPVPDPLTRDEFSRLIDACHHQQT 227 Query: 1208 QTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQ 1315 + + TG+R E+ L DID + + +R+ Sbjct: 228 KNLWTVAVFTGMRHGEIAALAWEDIDLKAGTITVRR 263 >ref|NP_037686.1|integrase Length = 357 Score = 31.6 bits (70), Expect = 0.47 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +2 Query: 1235 TGVRRAELCRLKSADIDSQRMMVHIRQGKGGHDRDVPLS 1351 TG R +LCR+K +DI+ + HI Q K G +PL+ Sbjct: 209 TGQRVGDLCRMKWSDINDNHL--HIEQSKTGAKLAIPLT 245 >ref|NP_852561.1|DNA integration Length = 369 Score = 31.6 bits (70), Expect = 0.47 Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 12/167 (7%) Frame = +2 Query: 878 ELQRRNYAQSTVKGYLRIVQDFAEHFHQQPD-------KLGPEHLRQ-YQAHLFRDKHLN 1033 E++ + +ST GY + H P KL H+++ Y+ + DK + Sbjct: 74 EIKSMSIEKSTFAGYKAFINQ-----HVIPSIGMVTLHKLNVIHIQKCYKTAI--DKGIA 126 Query: 1034 AGTVQQYVAALRFFFNKTLKRHYL----LDDIPMPKRHRKMPEILSPDEVALLIGSASNL 1201 ++ L+ N +K++ + D +PK+ + + + +EV + + Sbjct: 127 NNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAHSQES 186 Query: 1202 LHQTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGGHDRDV 1342 + + +TG+R E+ L+ DID ++ V I Q GHD + Sbjct: 187 RYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQ-TSGHDNKI 232 >ref|NP_076696.1|integrase Length = 377 Score = 31.6 bits (70), Expect = 0.47 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -3 Query: 1930 QARKHCASLR-KKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETT 1784 Q R C L KK ++ H LRH A +L G++ ++ LGH S+ T Sbjct: 299 QLRNMCKKLGFKKIITCHGLRHTHASTMLYKGINILYVSKRLGHSSLNVT 348 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,185,209 Number of Sequences: 14420 Number of extensions: 329831 Number of successful extensions: 1133 Number of sequences better than 0.5: 32 Number of HSP's better than 0.5 without gapping: 977 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1125 length of database: 3,019,461 effective HSP length: 96 effective length of database: 1,635,141 effective search space used: 1352261607 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig52 (3778 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,828,875 Number of Sequences: 14420 Number of extensions: 413703 Number of successful extensions: 1307 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 1158 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1307 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 1844990079 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig53 (5263 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_853610.1|gp50 38 0.010 ref|YP_024421.1|Hypothetical protein 35 0.062 ref|NP_958295.1|hypothetical protein 33 0.40 >ref|NP_853610.1|gp50 Length = 495 Score = 38.1 bits (87), Expect = 0.010 Identities = 21/52 (40%), Positives = 29/52 (55%) Frame = +3 Query: 2886 AFGGYVVSAVSGTRDLRHGELVVGAGASPEPIEVNVRNDGGAVTVTTEGSQG 3041 A+ G V+ AV TRD+R VG G S P+E +R+ GA+ V + S G Sbjct: 430 AWCGQVLDAVKPTRDIRIYAWAVGLGGSMVPVEAWIRSANGAIDVVGKDSVG 481 >ref|YP_024421.1|Hypothetical protein Length = 741 Score = 35.4 bits (80), Expect = 0.062 Identities = 36/114 (31%), Positives = 42/114 (36%), Gaps = 1/114 (0%) Frame = +1 Query: 4900 VPGGWHGNIPG*AARSGLG-NSSAGTGGAIGPLWFGATWCRFGFVGRLSIGGQALGGHNR 5076 V GG G A +G G NSS G +G W G G G + GG GG+N Sbjct: 551 VVGGGGGGAANRAIAAGNGGNSSVSGAGIVGLSWTGGRAGANGVQGYYASGGN--GGNNS 608 Query: 5077 GTLRAVGKIPLVLGKHNSGQGVFPKGTLGTTPEPWGKRFPENLASGAGFGPEPG 5238 + A N+ GV G GT P G R S AG G G Sbjct: 609 SNVGAGAG----ASSGNAASGVSGGGGGGTGPGNGGWRSGNGGGSNAGVGTSNG 658 >ref|NP_958295.1|hypothetical protein Length = 215 Score = 32.7 bits (73), Expect = 0.40 Identities = 24/66 (36%), Positives = 28/66 (42%) Frame = -2 Query: 2355 RSESPTPGPPHSESTLARTPAVRPNPRPVSATPSPACRPSVPPSRCSIRPA*CSTAGTGP 2176 RS P PH ++ A + P PR + PSP CRPS PP P CS P Sbjct: 14 RSPGSAPTAPHCSASPASC-SDGPAPRS-TRPPSPPCRPSRPPCTAG-TPTACSAGPAVP 70 Query: 2175 GRPCPR 2158 R R Sbjct: 71 MRAARR 76 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,508,399 Number of Sequences: 14420 Number of extensions: 552070 Number of successful extensions: 2133 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 1549 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2110 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2582143732 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig54 (4284 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_944303.1|conserved phage mega protein 37 0.018 >ref|NP_944303.1|conserved phage mega protein Length = 4602 Score = 37.0 bits (84), Expect = 0.018 Identities = 46/138 (33%), Positives = 56/138 (40%), Gaps = 11/138 (7%) Frame = +1 Query: 2917 GRVEPERHGPSAERERVQHGQRPAGGDDAQRVAVRGGDAVQ-RWGEDRVFPAA-GHHRQH 3090 GRV P+ G A R Q R AGGD RGG A + R D PA G + Sbjct: 1482 GRVSPDEGGRDAGRVPEQPSGRDAGGD-------RGGAAKRNRQSRDAGEPAVRGAAAEA 1534 Query: 3091 DQGVQHERDERQRVRGG---GRAHGTVHRTG-----QRGQLHR-GVQRAVRRHQLDFVWP 3243 D G QH R+ + R G G G V R G + G+L R G RA + V Sbjct: 1535 DAGDQHGREVGRGDRAGAGDGNDRGPVSRVGDDYRVKPGELKRTGSWRATAEQNVRIV-E 1593 Query: 3244 SLDALRYEYREEDADQRA 3297 + L E R D+ A Sbjct: 1594 LVKQLEQEGRRPTPDEAA 1611 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,704,933 Number of Sequences: 14420 Number of extensions: 404620 Number of successful extensions: 1566 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 1336 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1566 length of database: 3,019,461 effective HSP length: 99 effective length of database: 1,591,881 effective search space used: 2114017968 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig56 (2868 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958522.1|putative protein 32 0.37 >ref|NP_958522.1|putative protein Length = 261 Score = 32.0 bits (71), Expect = 0.37 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 Query: 2232 GVKEVTDKDGKVTFEYTIDKNSE 2300 G+K+VTDKDG V F Y D +E Sbjct: 64 GIKKVTDKDGNVVFSYFFDIRTE 86 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,215,979 Number of Sequences: 14420 Number of extensions: 270190 Number of successful extensions: 1072 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 912 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1071 length of database: 3,019,461 effective HSP length: 97 effective length of database: 1,620,721 effective search space used: 1390578618 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig57 (5360 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003955.1|hypothetical protein 50 2e-06 ref|NP_817998.1|gp25 33 0.41 >ref|YP_003955.1|hypothetical protein Length = 59 Score = 50.4 bits (119), Expect = 2e-06 Identities = 20/34 (58%), Positives = 28/34 (82%) Frame = +2 Query: 488 MAKEKFDRSKPHVNIGTIGHIDHGKTTLTAAITK 589 M+KEKF+R+KP +N+G IGH+DHGKT L A+ + Sbjct: 1 MSKEKFERTKPVLNVGIIGHVDHGKTELAKALLR 34 >ref|NP_817998.1|gp25 Length = 941 Score = 32.7 bits (73), Expect = 0.41 Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 9/140 (6%) Frame = +1 Query: 1213 GNGNRRLPGYAQDGGHGRGNVQEXXXXXXXXXXXXXXXXXXXKGHGGAR--SGDREAGFD 1386 G+G R GY GG G G G GGA+ SGD + G D Sbjct: 745 GSGRRSNSGYRYGGGGGGGGAYIDVLIPVEAIGPTYSTTRGLGGAGGAKAYSGDGKDGAD 804 Query: 1387 YAA--YQVQGRSLRAEQGR-----RRTSYSVLQGIPAAVLFPHDGRNGSGAVAGRHGDGD 1545 A + G SL A G+ +S S +G+ + G + +G G G+G Sbjct: 805 GGASTFTSGGVSLTANGGQGGKKGTNSSSSGARGLGGTAVI--TGLDATGFSGGNGGNGG 862 Query: 1546 AGRQREPRSGTDHSRGHGQG 1605 + P +G + G G G Sbjct: 863 S----SPTNGQSRTNGAGAG 878 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,846,100 Number of Sequences: 14420 Number of extensions: 574049 Number of successful extensions: 1967 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1966 length of database: 3,019,461 effective HSP length: 101 effective length of database: 1,563,041 effective search space used: 2633724085 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig58 (7853 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,413,124 Number of Sequences: 14420 Number of extensions: 882584 Number of successful extensions: 3114 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 2389 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3114 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 3819209653 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig59 (6068 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_943951.1|hypothetical protein 37 0.032 ref|NP_039673.1|observed 43.0Kd protein 35 0.094 ref|NP_542342.1|unknown 34 0.16 ref|YP_025041.1|putative transposase B 33 0.36 ref|NP_958267.1|hypothetical protein 33 0.46 ref|YP_112516.1|putative membrane protein 33 0.46 >ref|NP_943951.1|hypothetical protein Length = 309 Score = 36.6 bits (83), Expect = 0.032 Identities = 22/64 (34%), Positives = 32/64 (50%) Frame = +1 Query: 4852 GSGVVIGETTEIGDDVLLYQGVTLGGTGNEKGKRHPTIGNSVVVGTGAKILGNIRIGDNV 5031 G IG ++IGDDV++ V + N KR IG SV +G I RI +NV Sbjct: 76 GENCRIGTRSQIGDDVVIMDNVDI--DDNVTIKRDTVIGESVRIGYNTTIYERCRIRNNV 133 Query: 5032 KVGA 5043 ++ + Sbjct: 134 RISS 137 >ref|NP_039673.1|observed 43.0Kd protein Length = 313 Score = 35.0 bits (79), Expect = 0.094 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 7/85 (8%) Frame = +1 Query: 4834 RFFIDH--GSGVVIGETTEIGDDVLLYQGVTLGGTG-----NEKGKRHPTIGNSVVVGTG 4992 R+ ID+ G G + E G+ L+Q G TG N G P I + V Sbjct: 22 RWTIDYPWGPGELFLELETGGEHNALHQVYVTGATGGTYTLNVNGTNTPAIDYNDVSENP 81 Query: 4993 AKILGNIRIGDNVKVGAGSVVVHPV 5067 + G+I+ + VGAG+ VVHPV Sbjct: 82 QGLAGDIQDALDAAVGAGNAVVHPV 106 >ref|NP_542342.1|unknown Length = 164 Score = 34.3 bits (77), Expect = 0.16 Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 17/110 (15%) Frame = -1 Query: 4049 PSSATLNRPSMRVRYPARETESFPPGRQAP--------PYRSGSTLRS-------RVPGC 3915 P++ + P R R AR + S P GR AP P S S L + R Sbjct: 12 PTTCSSPLPISRTRDCARSSRSAPTGRSAPWSRRSPKSPRPSASRLANPRWSSLARSFPF 71 Query: 3914 RPPTPETSSARWRVHRHCWPGSRSLRNRAGWETSHRSA--C*TRAYLRRR 3771 PPT TS+A W R C + S+R A + +A C + RR Sbjct: 72 SPPTRNTSAALWPRDRSCSSMAPSIRKTAASPIARSAATSCIRPCFANRR 121 >ref|YP_025041.1|putative transposase B Length = 280 Score = 33.1 bits (74), Expect = 0.36 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Frame = -3 Query: 6030 SRPACPQDNGRHERMHRTLKAATAKPP------QATVRLQQQAFHAFQREYNEERPHEAL 5869 SR CP DN E H +LK P + + + HAF YN +R H +L Sbjct: 205 SRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAF---YNRKRIHSSL 261 Query: 5868 DNKTP 5854 +TP Sbjct: 262 GYQTP 266 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 32.7 bits (73), Expect = 0.46 Identities = 56/218 (25%), Positives = 67/218 (30%), Gaps = 25/218 (11%) Frame = +3 Query: 1317 EPGYRRRHAGARVPYANPRRCAAHARIRAGAQTEACXXXXXXXXXXXXXXXAAAQWTAGH 1496 EP + R A +R P A PRR AR R + C A A A Sbjct: 53 EPDHPCRRAPSR-PAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPE 111 Query: 1497 HPRVLPIRTPACGRRFHR---RGPQA-TGASPRG--------VEDWRAGDRDR------- 1619 + L R P C R H R P+ T A P G VED R R R Sbjct: 112 YAPALRPRAPECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPRRR 171 Query: 1620 ------AGQHRGRALRHGGDRRGLQAXXXXXXXXXXXXXXXXXDPH*RPHGNQRPRHXXX 1781 G HR R R G R ++A P +RPR Sbjct: 172 VQPRLGVGVHRRRGARRVGRRVRVRARPG-------------------PGAARRPRRRPH 212 Query: 1782 XXXXXSPAPGERTPDVDSARHHRQQVRARGGRECRRCT 1895 + P RT R HR++ R R T Sbjct: 213 PEHPRAVRPRRRT-----GRRHRRRASLRPRHRRHRST 245 >ref|YP_112516.1|putative membrane protein Length = 612 Score = 32.7 bits (73), Expect = 0.46 Identities = 19/63 (30%), Positives = 29/63 (46%) Frame = +1 Query: 625 GRITVGKEATALREKIAEITGGGVRNVVLNLAGVDFIDSTGLGALVVCATSARKAGGGVK 804 G I+ G ++ R + GG +NVV ++G I G L R+ GGG++ Sbjct: 555 GGISTGASVSSPRSSSTSNSSGGFQNVVFEISGQSLI-----GVLSSTLDKNRRLGGGLR 609 Query: 805 LVN 813 L N Sbjct: 610 LAN 612 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,288,335 Number of Sequences: 14420 Number of extensions: 631359 Number of successful extensions: 2131 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 1710 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2127 length of database: 3,019,461 effective HSP length: 102 effective length of database: 1,548,621 effective search space used: 2973352320 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig60 (7542 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,247,541 Number of Sequences: 14420 Number of extensions: 739429 Number of successful extensions: 2608 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 2007 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2605 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3697424410 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig61 (4690 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_047968.2|gp23 36 0.033 ref|YP_025058.1|DnaC 36 0.033 >ref|NP_047968.2|gp23 Length = 249 Score = 36.2 bits (82), Expect = 0.033 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%) Frame = +2 Query: 3590 PSPTPNSSRCTRSRKQPKMP----LPSDSRPVRIPAKSNSIPEGSRTPFRD 3730 PS TP + R ++ R +P+ LP ++P+ P+ S++ P GS+ P D Sbjct: 75 PSSTPKTGRHSKPRTEPETDDTATLPRHAKPLATPSPSSTTPAGSKGPLTD 125 >ref|YP_025058.1|DnaC Length = 260 Score = 36.2 bits (82), Expect = 0.033 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Frame = -2 Query: 4392 EHLFILGPTGVGKSFLACALAQKACRDGYSALYTGTAALFRDLAIARADGSLRLLLAKFS 4213 E++ + GP G GK+ LA A+ +G S L+ TA L + + +RL L Sbjct: 102 ENVILFGPRGAGKTSLALAMLTSLRDEGQSGLFISTAELSNLMGLQYDAPDVRLRLVGIE 161 Query: 4212 R----IDVLVIDDW 4183 R VL++DD+ Sbjct: 162 RAMKEAGVLLLDDF 175 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,976,098 Number of Sequences: 14420 Number of extensions: 581148 Number of successful extensions: 1841 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 1554 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1836 length of database: 3,019,461 effective HSP length: 100 effective length of database: 1,577,461 effective search space used: 2306247982 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig62 (8473 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_039614.1|gene IV product 86 8e-17 ref|NP_047359.1|maturation protein 81 2e-15 ref|NP_040579.1|G IV protein 77 4e-14 ref|NP_047372.1|putative maturation protein 61 2e-09 ref|NP_040655.1|unknown protein 55 9e-08 ref|NP_604426.1|Putative structural protein 33 0.38 ref|NP_040595.1|tail component 33 0.49 >ref|NP_039614.1|gene IV product Length = 428 Score = 85.5 bits (210), Expect = 8e-17 Identities = 65/266 (24%), Positives = 134/266 (50%), Gaps = 8/266 (3%) Frame = -2 Query: 5814 NNSVILRDRVSKVIPARMMF-EELMGPRAEVEIELRFLEVSLNDAVTYGVDLANTFSVIP 5638 NNS+++ ++V+PA F + R +V I+ E S+++ GVDL+ ++ Sbjct: 170 NNSLVVSGS-AQVMPALSDFITSIDVAREQVLIQSLMFETSVSN----GVDLSFALALAS 224 Query: 5637 ---LQNAFNFAQLAKSL-TSSSLFGI---NILSSAIVATMSNSSGKLLLSSEVRSVDNQP 5479 + FN + L +L T+ FGI NIL+ ++ A S+S+ K++ + + + Q Sbjct: 225 GGKVAGGFNTSALGTALSTAGGSFGIFNGNILALSLQAVQSDSNSKVISTPRILTQSGQS 284 Query: 5478 ATLHVGDRYPVLTSGYYGPQSFTNGANAYTPPPSFTFEDLGLTLKITPAVHGTESVTLDI 5299 + VG P +T G + N P + D+G++LK+TP V G + L I Sbjct: 285 GYISVGQNVPFVTGKVTGEAASVNN-----PFQTIERRDVGVSLKVTPVVMGNGQLVLTI 339 Query: 5298 DSEFKVLAGGSVNGIPIISSRVLKSKADLRFGEWAAVAGLVDRDQARTIAGIAGVSRVPV 5119 D++ L+ ++ I + R +++ ++ G+ + GL+ +Q + + +S++P+ Sbjct: 340 DTKADSLSNQAIASDIITNQRQIQTTVQIKDGQTLLLGGLISSNQFDSDRSVPFMSKIPL 399 Query: 5118 LGQLTSTHTRNKDESQVLILMRPRLL 5041 +G L +H+ +KD+ + +L+ ++ Sbjct: 400 IGWLFRSHSDSKDDRTMFVLLTAHVI 425 >ref|NP_047359.1|maturation protein Length = 429 Score = 80.9 bits (198), Expect = 2e-15 Identities = 55/237 (23%), Positives = 110/237 (46%), Gaps = 4/237 (1%) Frame = -2 Query: 5739 PRAEVEIELRFLEVSLNDAVTYGVDLANTFSVIPLQNAFNFAQLAKSLTSSS----LFGI 5572 PR +V +E E + +D + A S P+ N +L L+S+ +F Sbjct: 196 PRTQVLVESVIFETTASDGFDFSF-AAGDPSGSPVAGGINTDRLTSVLSSTGGSFGIFNG 254 Query: 5571 NILSSAIVATMSNSSGKLLLSSEVRSVDNQPATLHVGDRYPVLTSGYYGPQSFTNGANAY 5392 NIL ++ A ++S LL + ++ QP T G P +T G AN Sbjct: 255 NILGLSLKALETSSKSTLLSMPRILTMSGQPGTFTAGQNVPFVTGRVTG-----EAANVN 309 Query: 5391 TPPPSFTFEDLGLTLKITPAVHGTESVTLDIDSEFKVLAGGSVNGIPIISSRVLKSKADL 5212 P + D+G++LK+ P V + +D+ + ++ I ++R + + L Sbjct: 310 NPFQTIERHDVGISLKVVPVVTPGGLLIMDVSTNADSISDSQTASDIITNTRSISTTVQL 369 Query: 5211 RFGEWAAVAGLVDRDQARTIAGIAGVSRVPVLGQLTSTHTRNKDESQVLILMRPRLL 5041 + G+ + G+VD ++ + + + VS++P++G L ++ + N ++ + IL+R R++ Sbjct: 370 KSGQTVLLGGMVDNRESDSDSSVPWVSKIPLIGALFTSKSSNANKRTLYILIRARVV 426 >ref|NP_040579.1|G IV protein Length = 437 Score = 76.6 bits (187), Expect = 4e-14 Identities = 64/265 (24%), Positives = 120/265 (45%), Gaps = 7/265 (2%) Frame = -2 Query: 5814 NNSVILRDRVSKVIPARMMFEELMGPRAEVEIELRFLEVSLNDAVTYGVDL---ANTFSV 5644 NNS+++ + + + R +V I+ E SL + GVDL A + S Sbjct: 179 NNSLLVSGSAAIMNALADFITSIDVARDQVLIQSLMFETSLVN----GVDLSFAAGSASG 234 Query: 5643 IPLQNAFNFAQLAKSL-TSSSLFGI---NILSSAIVATMSNSSGKLLLSSEVRSVDNQPA 5476 + FN + L +L T+ FGI N+L+ +I A ++S+ K++ + + + Q Sbjct: 235 DKVAGGFNTSALGTALSTAGGSFGIFNGNVLALSIQAVKNDSNSKVISTPRILTQSGQTG 294 Query: 5475 TLHVGDRYPVLTSGYYGPQSFTNGANAYTPPPSFTFEDLGLTLKITPAVHGTESVTLDID 5296 + VG P +T G AN P + D+G++LK+TP V G + L ID Sbjct: 295 YISVGQNVPFVTGKVTG-----EAANVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTID 349 Query: 5295 SEFKVLAGGSVNGIPIISSRVLKSKADLRFGEWAAVAGLVDRDQARTIAGIAGVSRVPVL 5116 ++ L I + R +++ ++ G+ + GL+D + + VPV+ Sbjct: 350 TKADSLTSQMTASDIITNQRHMQTTVQIKDGQTLLLGGLIDSNTTDGNRSVPWFESVPVI 409 Query: 5115 GQLTSTHTRNKDESQVLILMRPRLL 5041 G L +H+ + +E + +L+ ++ Sbjct: 410 GWLFRSHSDSHNERTMFVLLTAHVI 434 >ref|NP_047372.1|putative maturation protein Length = 500 Score = 61.2 bits (147), Expect = 2e-09 Identities = 64/259 (24%), Positives = 118/259 (45%), Gaps = 9/259 (3%) Frame = -2 Query: 5811 NSVILRDRVSKVIPARMMFEELMGPRAEVEIELRFLEVSLNDAVTYGVDLANTFSVIPLQ 5632 N++I+ ++ ++ + P+ ++ IE E L D GV+L Q Sbjct: 197 NALIVSGTAQQLEKLDVLLSAIDVPQRQIFIEAVITETELGDNSELGVNL---------Q 247 Query: 5631 NAFNFAQLAKSLTSSSLFGINILS------SAIVATMSNSSGKLLLSS-EVRSVDNQPAT 5473 AF+ A +L ++S N+ +A+V +S SS LLS + +D + Sbjct: 248 AAFDKAGFVTNLVNASKLKDNLFIFESGDFNALVKAISGSSDTRLLSRPNILIMDRERGY 307 Query: 5472 LHVGDRYPVLTSGYYGPQSFTNGANAYTPPPSFTFEDLGLTLKITPAVHGTESVTLDIDS 5293 + VG P L S S T+G T +D+G++L++TP V G + V L I+ Sbjct: 308 ITVGQNVPFLVSN-----STTDGG---TSVQRIERKDVGVSLEVTPHVMG-DDVILVINQ 358 Query: 5292 EFKVLAGGSVNGIPIISSRVLKSKADLRFGEWAAVAGLVDRDQARTIAGIAGVSRVPVLG 5113 E + ++ I + R L + ++ G+ + GL+ ++ +G+ + P++G Sbjct: 359 ESSSVTDSTIAADIITNKRTLMTTVAVKSGQTIVLGGLISDEKRNVESGVPVLKDTPLIG 418 Query: 5112 QL-TSTHTRN-KDESQVLI 5062 L ST T+N + E +V+I Sbjct: 419 GLFRSTSTKNVQKELRVVI 437 >ref|NP_040655.1|unknown protein Length = 430 Score = 55.5 bits (132), Expect = 9e-08 Identities = 57/266 (21%), Positives = 116/266 (43%), Gaps = 5/266 (1%) Frame = -2 Query: 5823 DTQNNSVILRDRVSKVIPARMMFEELMGPRAEVEIELRFLEVSLNDAVTYGVDLANTFSV 5644 D + NSV S + + + P +V IE +E S++ + G++ S Sbjct: 156 DERTNSVFAALPSSFFPALESVIQAIDVPVRQVAIEANVVEASVDWSKRLGLNWGGALS- 214 Query: 5643 IPLQNAFNFAQLAKSLTSSSLFGI--NILS--SAIVATMSNSSGKLLLSSEVRSVDNQPA 5476 + +A L+ + SS FG N LS A + +G+++ + ++D Q A Sbjct: 215 LGNWSAVTAGDLSVAAGSSIGFGFLSNTLSLDGLFTAMENEGNGRVVSRPTLLTLDRQSA 274 Query: 5475 TLHVGDRYPVLTSGYYGPQSFTNGANAYTPPPSFTFEDLGLTLKITPAVHGTESVTLDI- 5299 ++ G P QS +GA S F+ L+L++ P + S+ +++ Sbjct: 275 SVLRGTELPY-------QQSAGDGAT------SVAFKHAALSLEVKPVISPDNSIVIEVL 321 Query: 5298 DSEFKVLAGGSVNGIPIISSRVLKSKADLRFGEWAAVAGLVDRDQARTIAGIAGVSRVPV 5119 S +++G+P I + L + + G+ + G+ + + ++G+SR+P Sbjct: 322 VSRDSPNFSNAIDGVPPIDTNRLVTTIRVPHGQTVVLGGVYSTINQQGSSRVSGISRIPG 381 Query: 5118 LGQLTSTHTRNKDESQVLILMRPRLL 5041 +G+L ++ ++LI + PR+L Sbjct: 382 IGRLFKKKEHVTEQYELLIFLTPRIL 407 >ref|NP_604426.1|Putative structural protein Length = 485 Score = 33.5 bits (75), Expect = 0.38 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 11/74 (14%) Frame = +2 Query: 86 GEGLDGDRAFLGGGD-----DGTGRNAWHRLAR--RRQTAIGELRP*RGPLGSA----GP 232 G G DG +GGGD G AW + R R A+G +R G A GP Sbjct: 367 GRGGDGGSVIIGGGDVPGDLQGAAPGAWQAMPRLQRWVDAMGSVRHALTISGGAECGGGP 426 Query: 233 RAETEGVVAWRALT 274 G V+WR L+ Sbjct: 427 TINLPGAVSWRPLS 440 >ref|NP_040595.1|tail component Length = 853 Score = 33.1 bits (74), Expect = 0.49 Identities = 23/70 (32%), Positives = 34/70 (48%) Frame = -1 Query: 2455 DYRDALVVAISQSGESTDTNLVLERAREQGALTLGITNESGSTLANLAEHVILVRAGREK 2276 D+ LV++ +Q+G + D LVL RA + LT T+ES S L A + Sbjct: 148 DFNKTLVLSGNQAGLTADRMLVLSRAGQAAGLTFNQTSESLSALVKAGVSGEAQIASISQ 207 Query: 2275 SVAATKTYTG 2246 SVA + +G Sbjct: 208 SVARFSSASG 217 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,446,188 Number of Sequences: 14420 Number of extensions: 924056 Number of successful extensions: 3132 Number of sequences better than 0.5: 7 Number of HSP's better than 0.5 without gapping: 2357 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3126 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 4132284539 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig63 (7763 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_944113.1|gp23 major head protein 35 0.16 ref|YP_164298.1|hypothetical protein 33 0.35 ref|NP_817363.1|gp25 33 0.45 >ref|NP_944113.1|gp23 major head protein Length = 534 Score = 34.7 bits (78), Expect = 0.16 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Frame = +3 Query: 906 NSRDGNRNIAIRQSYGRDIDFVVDHRGSGVLEEDALNARGTDTGRGGYA----TGASNKN 1073 NS+D N A +YG D DF G G ++ A+ RGT G +A A+ Sbjct: 142 NSQDANAREAFHPTYGPDADF----SGRGAAQDIAVFVRGTAVASGAFAKLHIEAATGVQ 197 Query: 1074 RACDAKRAIRDYA 1112 + I+DYA Sbjct: 198 AGTKTVQFIKDYA 210 >ref|YP_164298.1|hypothetical protein Length = 183 Score = 33.5 bits (75), Expect = 0.35 Identities = 27/94 (28%), Positives = 38/94 (40%) Frame = -2 Query: 4792 GQPIHLHFQKMVHPDAIGTIRFAQRALRLRMHYRAVDHEIDLIGAHPDFECIHRFTVIAG 4613 G+PI+L F++MV PD G +R A V Sbjct: 22 GRPIYLEFKRMVDPDT-GEVRLA--------------------------------LVADS 48 Query: 4612 LLDRIVRRLRGYRAGGLPVALLDQPRAVLRHHEV 4511 +D+ + + RGY+AG A L QPR V +H V Sbjct: 49 GIDKFLLKERGYKAGAKVRAELKQPRDVRKHRLV 82 >ref|NP_817363.1|gp25 Length = 320 Score = 33.1 bits (74), Expect = 0.45 Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 2/153 (1%) Frame = +2 Query: 4325 TSGSGYHATNPQAAVYWNPANTASGTYTLKGTFTLMKPSGHNNYYGLVFGGSGLEGPQQS 4504 TS SG + A V + TA+G+ G + G +N G GG G G QS Sbjct: 165 TSTSGSPGSGGTAFVSGISSTTANGSAGGAGDYNAAGAPGVDNTSGGAAGGGGGSGSDQS 224 Query: 4505 YLYFVVAQNGTWLIKKRDGEATSTISPKTPNDAVKKPGDDGKSVNALEVRVGADKVDFVV 4684 +YF + G + G A +T + N + PG G G D+V + Sbjct: 225 TIYF-GGKGGD--VTGASGGAGATFTSNAQNGPNQAPGQAGPGGGG----AGRDRVTPLT 277 Query: 4685 N--GAVVHSEPKSALGKTDGTYGIRVNHLLEVQ 4777 G V ++E A+ G R +HL+ Q Sbjct: 278 TRPGTVAYTEVVVAVP------GQRHHHLVVAQ 304 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,454,461 Number of Sequences: 14420 Number of extensions: 809211 Number of successful extensions: 2722 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 2105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2718 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 3773616223 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig64 (10,156 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046877.1|putative non-heme haloperoxidase 54 2e-07 ref|NP_817650.1|gp61 49 1e-05 ref|NP_817352.1|gp14 41 0.003 ref|NP_818574.1|gp36 39 0.008 ref|NP_859265.1|hypothetical protein 37 0.031 ref|NP_612899.1|hypothetical protein 37 0.031 ref|NP_859099.1|hypothetical protein 37 0.031 ref|NP_050557.1|hypothetical protein 37 0.031 ref|NP_049519.1|putative tail fiber protein 37 0.031 ref|NP_075300.1|gp33 35 0.20 ref|NP_818345.1|gp44 34 0.26 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 54.3 bits (129), Expect = 2e-07 Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 1/109 (0%) Frame = +2 Query: 4535 GGGEPVVLLHGAFMTITNNWAGWISELSKTR-KVIAVEMQGHGRTADVARDFTYENLADD 4711 G G P+V LHG ++ + ++ L++ +VIA++ HGR+ + T E++ Sbjct: 20 GTGAPLVFLHGLSVS-AKAYEEMLTRLAEHGFRVIALDAANHGRSGSLPTGHTVEDMTRV 78 Query: 4712 VAALLNYLKIPRADLIGYSVGGAVAMQCAIRHPDTVRRAVIISSTCRRD 4858 L+ L I RA G+S+GG + ++ A RHP V AV++ + ++ Sbjct: 79 TLKTLDELDIHRAIFAGHSMGGGMVVEIAARHPHRVAAAVLLDAAAGQE 127 >ref|NP_817650.1|gp61 Length = 274 Score = 48.5 bits (114), Expect = 1e-05 Identities = 29/108 (26%), Positives = 52/108 (48%) Frame = +2 Query: 4535 GGGEPVVLLHGAFMTITNNWAGWISELSKTRKVIAVEMQGHGRTADVARDFTYENLADDV 4714 G G P+V LHG ++ I + V A++ HGRT + T E + Sbjct: 22 GTGVPLVFLHGLTVSALAYEELLIELAQRGFAVTALDAVNHGRTDSLPFGHTVEEMTRVT 81 Query: 4715 AALLNYLKIPRADLIGYSVGGAVAMQCAIRHPDTVRRAVIISSTCRRD 4858 L+ L I +A +G+S+GG + + A R+P+ V A+++ + ++ Sbjct: 82 LRALDALGIDQAVFVGHSMGGGMVAEIAPRYPERVLAAILLDAAAGKE 129 >ref|NP_817352.1|gp14 Length = 1188 Score = 40.8 bits (94), Expect = 0.003 Identities = 32/95 (33%), Positives = 39/95 (41%) Frame = -1 Query: 7624 PAGPPQSEARNWPRLGRRSESALQGSPDGAGGPPEKQALIRTGSQPEIPGRSRKA*LANP 7445 PAGPP P + + L P G GG P G+Q E GRS A +P Sbjct: 524 PAGPPA------PSMSPAVDGILL--PGGLGGGP--------GAQAERRGRSSSAASGSP 567 Query: 7444 APDPSTPECRSPPSSPATRRTQGPILPRSPTHPAG 7340 A DP P + SS + P+LP T P G Sbjct: 568 AGDPILPPPGASGSSSGPKLPDAPVLPYDTTLPPG 602 >ref|NP_818574.1|gp36 Length = 1028 Score = 39.3 bits (90), Expect = 0.008 Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 12/112 (10%) Frame = +3 Query: 7941 GGNGRDRGQPVSGIGCLARQRSAESAT-GSGWKEIYRGWSLGQCAGGATGGSRVNGGIFP 8117 GG G + G G G A Q ES G + ++ + G GG++ G Sbjct: 869 GGKGGNGGDTRPGYGGGAGQWRGESLVRGVDFPDVPNAQIIFDVGTGGQGGAKEQNGSTG 928 Query: 8118 GGRRRYAFDGCPGESLAPAGRGG--LGSGVDSESCGL---------RDYSGG 8240 RR A G E LAPAG G GSG D S G ++Y+GG Sbjct: 929 TVTRRRAISGGKAELLAPAGAGATQYGSGTDPMSTGRSPGDFVWNGKNYAGG 980 >ref|NP_859265.1|hypothetical protein Length = 645 Score = 37.4 bits (85), Expect = 0.031 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Frame = +3 Query: 51 IQGTVRDASGGAVAGATIELN----SPALIGGARKLQTDGDGAYRFASLAPGDYTMVVSA 218 + GT++ G A++GA I L SP + G +G Y ++ PG+Y + V+ Sbjct: 5 VSGTLKSPDGEAISGANITLTALTVSPDALSGTSASAVTREGGYYGMTMDPGEYAVSVTV 64 Query: 219 KG 224 KG Sbjct: 65 KG 66 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 37.4 bits (85), Expect = 0.031 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Frame = +3 Query: 51 IQGTVRDASGGAVAGATIELN----SPALIGGARKLQTDGDGAYRFASLAPGDYTMVVSA 218 + GT++ G A++GA I L SP + G +G Y ++ PG+Y + V+ Sbjct: 5 VSGTLKSPDGEAISGANITLTALTVSPDALSGTSASAVTREGGYYGMTMDPGEYAVSVTV 64 Query: 219 KG 224 KG Sbjct: 65 KG 66 >ref|NP_859099.1|hypothetical protein Length = 645 Score = 37.4 bits (85), Expect = 0.031 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Frame = +3 Query: 51 IQGTVRDASGGAVAGATIELN----SPALIGGARKLQTDGDGAYRFASLAPGDYTMVVSA 218 + GT++ G A++GA I L SP + G +G Y ++ PG+Y + V+ Sbjct: 5 VSGTLKSPDGEAISGANITLTALTVSPDALSGTSASAVTREGGYYGMTMDPGEYAVSVTV 64 Query: 219 KG 224 KG Sbjct: 65 KG 66 >ref|NP_050557.1|hypothetical protein Length = 645 Score = 37.4 bits (85), Expect = 0.031 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Frame = +3 Query: 51 IQGTVRDASGGAVAGATIELN----SPALIGGARKLQTDGDGAYRFASLAPGDYTMVVSA 218 + GT++ G A++GA I L SP + G +G Y ++ PG+Y + V+ Sbjct: 5 VSGTLKSPDGEAISGANITLTALTVSPDALSGTSASAVTREGGYYGMTMDPGEYAVSVTV 64 Query: 219 KG 224 KG Sbjct: 65 KG 66 >ref|NP_049519.1|putative tail fiber protein Length = 645 Score = 37.4 bits (85), Expect = 0.031 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Frame = +3 Query: 51 IQGTVRDASGGAVAGATIELN----SPALIGGARKLQTDGDGAYRFASLAPGDYTMVVSA 218 + GT++ G A++GA I L SP + G +G Y ++ PG+Y + V+ Sbjct: 5 VSGTLKSPDGEAISGANITLTALTVSPDALSGTSASAVTREGGYYGMTMDPGEYAVSVTV 64 Query: 219 KG 224 KG Sbjct: 65 KG 66 >ref|NP_075300.1|gp33 Length = 267 Score = 34.7 bits (78), Expect = 0.20 Identities = 32/118 (27%), Positives = 40/118 (33%), Gaps = 1/118 (0%) Frame = +3 Query: 7890 LLSDGEHSSLAGARPDAGGNGRDRGQP-VSGIGCLARQRSAESATGSGWKEIYRGWSLGQ 8066 L + G + + G A G+G G +SG+ GS Sbjct: 149 LTASGGAAGVKGTSSSASGSGGAGGTTSISGVSATGYTGGKGGNGGSSPSSGQSRTDGSG 208 Query: 8067 CAGGATGGSRVNGGIFPGGRRRYAFDGCPGESLAPAGRGGLGSGVDSESCGLRDYSGG 8240 GG GG R N F GG G S PAG GG G+ + G SGG Sbjct: 209 AGGGGGGGVRSNDNSFSGGSN--------GTSSGPAGNGGRGTDGSINTGGSNAGSGG 258 >ref|NP_818345.1|gp44 Length = 326 Score = 34.3 bits (77), Expect = 0.26 Identities = 37/120 (30%), Positives = 45/120 (37%) Frame = +3 Query: 7902 GEHSSLAGARPDAGGNGRDRGQPVSGIGCLARQRSAESATGSGWKEIYRGWSLGQCAGGA 8081 G++ S AGA GG D G R SA G+G + G + G A Sbjct: 212 GDNPSGAGAGGGGGGRVSDSNSQTPG------GRGGNSAVGTGGERGGAGAN-GSSAADQ 264 Query: 8082 TGGSRVNGGIFPGGRRRYAFDGCPGESLAPAGRGGLGSGVDSESCGLRDYSGGSTDEDVL 8261 TGG+ GG GG + G + G GG GSG R Y G D VL Sbjct: 265 TGGNPGAGGGGGGGNNSGSTTTGHGGNGGKYGGGGGGSG--GHRTNARRYGGAGGDGYVL 322 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,990,871 Number of Sequences: 14420 Number of extensions: 1205816 Number of successful extensions: 4184 Number of sequences better than 0.5: 11 Number of HSP's better than 0.5 without gapping: 2907 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4175 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 4887304598 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig65 (8595 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_848225.1|hypothetical protein 38 0.016 ref|YP_164322.1|hypothetical protein 37 0.035 >ref|NP_848225.1|hypothetical protein Length = 918 Score = 38.1 bits (87), Expect = 0.016 Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 14/159 (8%) Frame = -2 Query: 2216 KKNTAQG--------IFYDAMDKIRERTSDDPLKAFKKAVENAKPLLEVKTRRVGGANYQ 2061 KKN +G + +A D +R+R D K ++ +NA + +R + Sbjct: 38 KKNAKEGKTGIPDAQTYMEAADLVRQRVVHDVYKKRQRVAQNAIAI----SRVTDTLDAN 93 Query: 2060 VPIEVPQNRRTSLAMRWIITNARTRPEKGMAEKLANELNDAA------NLRGGAIKKRDD 1899 +P P+ + + ++I RT K +A A EL+ A L +K DD Sbjct: 94 IP---PEQQTPANLQQFIFAGRRTTDGKDIAVTSAEELSTGAYQDWSRQLSAELLKAGDD 150 Query: 1898 VHRMAEANKAFAHYRW*LFRELIPDCMARTTPLERMRNI 1782 V + E +KA R FR L A++ + ++ + Sbjct: 151 VRKFFEQSKALGEQR---FRSLFDQQAAKSAQFQILKEL 186 >ref|YP_164322.1|hypothetical protein Length = 675 Score = 37.0 bits (84), Expect = 0.035 Identities = 32/119 (26%), Positives = 40/119 (33%), Gaps = 13/119 (10%) Frame = -1 Query: 6930 PGAAQGSPEVPVSTKVLNEALDQLKGANSGLTGVPPIPENTTTVGDAVAWLTAQPG---- 6763 PG Q P T L A + G G +P N T VG++ + T +PG Sbjct: 332 PGRGQVLPAAGAPTGALESAANT--GTAMPSAGGSDLPNNVTRVGNSFSGTTIRPGYTVN 389 Query: 6762 ---------GAGQSDAYRRTVVRVLHAHAVDIGQQLAKSGVELVPTPYPGVFTYGNGRN 6613 GQ A + V L A D+G S V VP P N N Sbjct: 390 GEAQATGFAPGGQRSAQNQRAVENLLARTPDVGMGFRPSSVSQVPPMAPDALAQYNAGN 448 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,779,110 Number of Sequences: 14420 Number of extensions: 984105 Number of successful extensions: 3371 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 2492 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3351 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 4194595560 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig66 (9045 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164323.1|hypothetical protein 39 0.010 ref|NP_665928.1|unknown 36 0.081 >ref|YP_164323.1|hypothetical protein Length = 2129 Score = 38.9 bits (89), Expect = 0.010 Identities = 44/155 (28%), Positives = 61/155 (39%), Gaps = 9/155 (5%) Frame = -3 Query: 1810 RVGAKITAPQAV-ADHHRRKSAQRVPVFLGREHAPHHRLDPHHLEVIAGYQFAPRQPRRL 1634 R G+KIT P A+ + H +RK + + + G E+ L + AP +P + Sbjct: 1921 RSGSKITVPWALESAHEKRKRLESMGILTGSEYR-------SALREFVALREAPAEPDK- 1972 Query: 1633 HVAQRERALTVHRDARKHLQPV-------AIIAIVLPGYAGAPVRRAGRNHLQRDQFRTP 1475 + Q ERA+ R+ P AI A + G AG H+ R R P Sbjct: 1973 -IKQMERAMIGRRNDGLDFFPTSAAVTEEAIDAADIQGGMDVLEPSAGMGHIGR---RDP 2028 Query: 1474 RRPRVGMQQDAIHPREHRRRAGDS-QPQRQRRHAG 1373 R R G + R R G QP R R H G Sbjct: 2029 RADRRGARSGGAFRRTPRVAGGQGLQPGRIRLHGG 2063 >ref|NP_665928.1|unknown Length = 99 Score = 35.8 bits (81), Expect = 0.081 Identities = 30/100 (30%), Positives = 42/100 (42%) Frame = +3 Query: 2691 ISAPSTPALTLGGSSWDASSSRPRATAGIRSNNLHCG*KSGCSARRGLKRRATRISYR*A 2870 ++ P +P T ++ +SRP T +R SGCS R RR RIS R Sbjct: 4 VARPRSPTATRAATAKARRASRP--TGRLRP--------SGCSRSRTASRRTPRISRR-- 51 Query: 2871 PRRARGTSCGWKAIRRRKMKRPLPAARWYRRGTLRLCGFR 2990 RR R T+ W + +R L +R + R G R Sbjct: 52 WRRHRATASSWTTTAKLAPRRTLTKSRTTAKSRRRSSGCR 91 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,775,260 Number of Sequences: 14420 Number of extensions: 980789 Number of successful extensions: 3499 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 2567 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3474 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4379095149 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig67 (7026 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_665939.1|unknown 34 0.24 ref|NP_818439.1|gp140 33 0.31 >ref|NP_665939.1|unknown Length = 279 Score = 33.9 bits (76), Expect = 0.24 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +3 Query: 6525 WQEIRVEEQRLLMIRDHEEGMSISELAEVYGVSRKTVYKWLERH 6656 W++ V E L+ GMS+S++ + G S +TV++WL+ H Sbjct: 72 WRDEEVMEALYLL-----RGMSVSQIGDYLGCSGQTVWRWLDEH 110 >ref|NP_818439.1|gp140 Length = 266 Score = 33.5 bits (75), Expect = 0.31 Identities = 15/46 (32%), Positives = 29/46 (63%) Frame = +3 Query: 6537 RVEEQRLLMIRDHEEGMSISELAEVYGVSRKTVYKWLERHDEQGFL 6674 R+EE + L +EG++ E+A+ +G++ T+Y W+ R ++G L Sbjct: 225 RLEEYKRL----RDEGLTKKEIAKRFGLNESTLYDWINRQKKKGNL 266 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,155,731 Number of Sequences: 14420 Number of extensions: 687020 Number of successful extensions: 2515 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 2012 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2513 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3433541838 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig68 (7448 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_164321.1|hypothetical protein 35 0.088 ref|NP_817477.1|gp27 34 0.20 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 35.4 bits (80), Expect = 0.088 Identities = 44/164 (26%), Positives = 57/164 (34%), Gaps = 22/164 (13%) Frame = -1 Query: 5162 RRTDRCDQHSPRDQASSQPG*SGA-GVIHGRTDGRRDRQEPAGRALRTRHAPDGGA---- 4998 R+ D + A S+P GA G + R R P RA+ HAP+ GA Sbjct: 259 RQVDVVREQGRLKAAESEPRHPGASGHLGNREPALRRAAGPGPRAVDREHAPEHGAAPVR 318 Query: 4997 ------GRVSRRHQREELP-----------GSHFADDRGNGGRQAGFSGLLDHAGGRGTA 4869 G+ +R QR + P G+ G G QA L D GG G A Sbjct: 319 GRPLPRGKPDQRVQRADQPVQRAERGLRDAGAGLPHQAGCGYLQADC--LQDRRGGPGGA 376 Query: 4868 GAEHQRGALLFGGLPAPDAAQDRGIADWPCGARAAADYDSERAR 4737 GA+ G + RG+ G A D E R Sbjct: 377 GADQPAARRGVQGQAGRRTVERRGLQGADAGGIRARRDDQEPVR 420 >ref|NP_817477.1|gp27 Length = 946 Score = 34.3 bits (77), Expect = 0.20 Identities = 53/214 (24%), Positives = 73/214 (34%), Gaps = 20/214 (9%) Frame = -1 Query: 5105 G*SGAGVIHGRTDGRRDRQEPAGRALRTRHAPDGGAGRVSRRHQREELPGSHFADDRGNG 4926 G +GA V G G + R GG V+R EL GS ++ RG+G Sbjct: 729 GTTGAWVTLGGAGGGGGSGRRSNSGYRYGGGGGGGGAYVNRIFVPVELMGSTYSVTRGSG 788 Query: 4925 GRQAGFSGLLDHAGGRGTAGAEHQRGALLF---------------GGLPAPDAAQDRGI- 4794 G +G + +L GRG A GA +F G ++ RG+ Sbjct: 789 G--SGGAKVLTSGDGRGGANG----GASVFSSGSVVITANGGGHGSGGTNSSSSGTRGLG 842 Query: 4793 ----ADWPCGARAAADYDSERARGKAVPLSGTGAEDWPRVAALGAHVYAGHGDRHDQHLY 4626 A G A+ + G + P SG D GA G G + + + Sbjct: 843 GTATAVGITGVTASLLSGANGGNGGSSPTSGGSKTD-----GAGAGGRGGGGKKSNDKTF 897 Query: 4625 AGSASIXXXXXXXREGGGQPGGDRDRERAADVGD 4524 G + GGG GG A D GD Sbjct: 898 NGGNNGTSDGPAGNGGGGSSGGSGTGTDAGDGGD 931 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,210,407 Number of Sequences: 14420 Number of extensions: 793714 Number of successful extensions: 2618 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 2090 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2608 length of database: 3,019,461 effective HSP length: 103 effective length of database: 1,534,201 effective search space used: 3649864179 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig69 (9900 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 131 2e-30 ref|NP_859265.1|hypothetical protein 42 0.002 ref|NP_612899.1|hypothetical protein 42 0.002 ref|NP_859099.1|hypothetical protein 42 0.002 ref|NP_050557.1|hypothetical protein 42 0.002 ref|NP_049519.1|putative tail fiber protein 42 0.002 ref|YP_006556.1|Ppp 35 0.20 ref|NP_943806.1|gp28 33 0.44 ref|NP_835645.1|putative transposase 33 0.44 >ref|NP_046572.1|ABC transporter Length = 705 Score = 131 bits (329), Expect = 2e-30 Identities = 99/477 (20%), Positives = 210/477 (44%) Frame = +3 Query: 7608 YAEKSLTTTIGQKVMHELRRTLYAQIQRLSLAYHDRKQTGDLISRVTGDIDSVQGFXXXX 7787 + L + KV E+ + ++ +L + + + ++ G++ISR I ++ F Sbjct: 224 FVRSYLIIKLSYKVDKEMSNVYFNKVTKLPINFFENREDGEVISRFNDGI-YIKDFFSAN 282 Query: 7788 XXXXXXXXXXXFGMIGVMFSISWKFTLIALSIVPVLFAVVFTYTRKIKKASRAVRKKEGE 7967 G+ +++ + L + + +L + + +KK ++ + + + + Sbjct: 283 FVTAIIDIILILGLGVILYRTNNILFLTIILPILLLSCLAILFFDHLKKKNQKLMEDKAK 342 Query: 7968 MVSIIHEVFSXXXXXXXXXXEDYEQRRYEVESMESVSIALRARGLKAKLSPLVEMIVACG 8147 S++ + ++ + + ++ L +I Sbjct: 343 STSLLINFLKNMTTVYSLNKTSFFLEKFHLTYDKQLNSTFSVAKAVISNEILKGLIQNSF 402 Query: 8148 TCMVLWFGARMVLDGSLSTGSLIVFVLYLSKMYKPMQELSKMTDTYTKAAVAWERIQEVL 8327 T ++LW G R VL+ S+S G+L+ + + + + M +A VA R +V+ Sbjct: 403 TIIILWVGTRQVLNDSMSLGTLLFINTLAAFLLSSLDRILSMQSDLQQAHVASIRFFDVV 462 Query: 8328 QTRRDVEDLPGALSAPLFRGEIEFDHVGFSYDSKAPVLRDVNLHIAPGEMAALVGPTGSG 8507 +D L+ F I+ ++ D ++ D+NL + + ++G +G+G Sbjct: 463 NYPVQ-QDSNENLTELDFIQNIKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTG 521 Query: 8508 KTTITSLVARFYDPTDGVVRIDGYDVRKLQQTSLRQQISFVLQETLLFHGTIATNIAYGK 8687 K+T +++ Y D + ++G D+ + S+R++I ++ + LF GTI N+ G+ Sbjct: 522 KSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGE 581 Query: 8688 SGATMEEIVRAAEQANASEFIDRMPDGYDTVVGERGVTLSGGQKQRIAIARALIRKLPIL 8867 EI A + EFI + Y + E G LS GQKQR+A+ARA++ + +L Sbjct: 582 I-FDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVL 640 Query: 8868 ILDEPTSGLDAESEQLVFDALDRLMEGKTSIVIAHRLATIRRADRIFVIDGGAIVET 9038 ILDE S +D ++ +L+++ L R+ I+I H + + ++ V I+E+ Sbjct: 641 ILDESLSNIDPDNTKLIYETLHRM--DCLIILITHNDPSNFKYNKKLVFRNNRIIES 695 >ref|NP_859265.1|hypothetical protein Length = 645 Score = 41.6 bits (96), Expect = 0.002 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 7/123 (5%) Frame = +3 Query: 504 ISGTVKDPGGALVPGARVAL------KDEGTGIVKAAVSDDQGAFLFPDLSHGQFEVTVS 665 +SGT+K P G + GA + L D +G +AV+ +G + + G++ V+V+ Sbjct: 5 VSGTLKSPDGEAISGANITLTALTVSPDALSGTSASAVT-REGGYYGMTMDPGEYAVSVT 63 Query: 666 ATGFQTAVVSHIIVE-TSRTTDVTVTLKVGAQEQSVTVEASAEVLETTSNLVSSVVTATA 842 G +TAV + +E T T + + L+ E S+ E + + +N+ + T Sbjct: 64 VKG-KTAVYGRVRIEGTESTVTLNMLLRRSLVEVSIPGELLTDFRQIQNNVADDLATIRR 122 Query: 843 ISE 851 ++E Sbjct: 123 LNE 125 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 41.6 bits (96), Expect = 0.002 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 7/123 (5%) Frame = +3 Query: 504 ISGTVKDPGGALVPGARVAL------KDEGTGIVKAAVSDDQGAFLFPDLSHGQFEVTVS 665 +SGT+K P G + GA + L D +G +AV+ +G + + G++ V+V+ Sbjct: 5 VSGTLKSPDGEAISGANITLTALTVSPDALSGTSASAVT-REGGYYGMTMDPGEYAVSVT 63 Query: 666 ATGFQTAVVSHIIVE-TSRTTDVTVTLKVGAQEQSVTVEASAEVLETTSNLVSSVVTATA 842 G +TAV + +E T T + + L+ E S+ E + + +N+ + T Sbjct: 64 VKG-KTAVYGRVRIEGTESTVTLNMLLRRSLVEVSIPGELLTDFRQIQNNVADDLATIRR 122 Query: 843 ISE 851 ++E Sbjct: 123 LNE 125 >ref|NP_859099.1|hypothetical protein Length = 645 Score = 41.6 bits (96), Expect = 0.002 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 7/123 (5%) Frame = +3 Query: 504 ISGTVKDPGGALVPGARVAL------KDEGTGIVKAAVSDDQGAFLFPDLSHGQFEVTVS 665 +SGT+K P G + GA + L D +G +AV+ +G + + G++ V+V+ Sbjct: 5 VSGTLKSPDGEAISGANITLTALTVSPDALSGTSASAVT-REGGYYGMTMDPGEYAVSVT 63 Query: 666 ATGFQTAVVSHIIVE-TSRTTDVTVTLKVGAQEQSVTVEASAEVLETTSNLVSSVVTATA 842 G +TAV + +E T T + + L+ E S+ E + + +N+ + T Sbjct: 64 VKG-KTAVYGRVRIEGTESTVTLNMLLRRSLVEVSIPGELLTDFRQIQNNVADDLATIRR 122 Query: 843 ISE 851 ++E Sbjct: 123 LNE 125 >ref|NP_050557.1|hypothetical protein Length = 645 Score = 41.6 bits (96), Expect = 0.002 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 7/123 (5%) Frame = +3 Query: 504 ISGTVKDPGGALVPGARVAL------KDEGTGIVKAAVSDDQGAFLFPDLSHGQFEVTVS 665 +SGT+K P G + GA + L D +G +AV+ +G + + G++ V+V+ Sbjct: 5 VSGTLKSPDGEAISGANITLTALTVSPDALSGTSASAVT-REGGYYGMTMDPGEYAVSVT 63 Query: 666 ATGFQTAVVSHIIVE-TSRTTDVTVTLKVGAQEQSVTVEASAEVLETTSNLVSSVVTATA 842 G +TAV + +E T T + + L+ E S+ E + + +N+ + T Sbjct: 64 VKG-KTAVYGRVRIEGTESTVTLNMLLRRSLVEVSIPGELLTDFRQIQNNVADDLATIRR 122 Query: 843 ISE 851 ++E Sbjct: 123 LNE 125 >ref|NP_049519.1|putative tail fiber protein Length = 645 Score = 41.6 bits (96), Expect = 0.002 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 7/123 (5%) Frame = +3 Query: 504 ISGTVKDPGGALVPGARVAL------KDEGTGIVKAAVSDDQGAFLFPDLSHGQFEVTVS 665 +SGT+K P G + GA + L D +G +AV+ +G + + G++ V+V+ Sbjct: 5 VSGTLKSPDGEAISGANITLTALTVSPDALSGTSASAVT-REGGYYGMTMDPGEYAVSVT 63 Query: 666 ATGFQTAVVSHIIVE-TSRTTDVTVTLKVGAQEQSVTVEASAEVLETTSNLVSSVVTATA 842 G +TAV + +E T T + + L+ E S+ E + + +N+ + T Sbjct: 64 VKG-KTAVYGRVRIEGTESTVTLNMLLRRSLVEVSIPGELLTDFRQIQNNVADDLATIRR 122 Query: 843 ISE 851 ++E Sbjct: 123 LNE 125 >ref|YP_006556.1|Ppp Length = 230 Score = 34.7 bits (78), Expect = 0.20 Identities = 22/62 (35%), Positives = 34/62 (54%) Frame = -2 Query: 5135 DVFAIGDVHGDCDRLLKLLSAAGLVEGSPAQVHWAAGRKVLLFTGDMVDKGPKAPEVLAL 4956 +V+ +GD+HG RL+ L V+ PAQ +L+ GD++D+G + E L L Sbjct: 22 NVWVVGDLHGCYTRLMSELHR---VDFDPAQ-------DLLISVGDLIDRGTENVECLEL 71 Query: 4955 LQ 4950 LQ Sbjct: 72 LQ 73 >ref|NP_943806.1|gp28 Length = 1932 Score = 33.5 bits (75), Expect = 0.44 Identities = 46/168 (27%), Positives = 63/168 (37%), Gaps = 2/168 (1%) Frame = +3 Query: 564 KDEGTGI-VKAAVSDDQGAFLFPDLSHGQFEVTVSATGFQTAVVSHIIVETSRTTDVTVT 740 K+EG G + D GA L D + + A Q V + + + + Sbjct: 1436 KNEGRGYDASGRLFSDTGALL--DRTFTSLNAQLQAMREQMVDVIEQVSQKLNDSALEPV 1493 Query: 741 LKVGAQEQSVTVEASAEVLETTSNLVS-SVVTATAISELPLIGRSTLGLARLVPGEVQNI 917 +K G Q LET + VS S+ TA + P I + +P + Sbjct: 1494 VKAGVQS----------ALETLKDSVSASIGTALGQAAAPPIADAVSSAVSSLPID---- 1539 Query: 918 QSGVGQGDTRFNNVPGGAVNVTLDGINNASNGFKSGGTVFYTTVPARL 1061 QSG G NV G A V + AS G SGGT +VPA L Sbjct: 1540 QSGAG-------NVGGNAAGVVTGALGMASGGPVSGGTPGKDSVPALL 1580 >ref|NP_835645.1|putative transposase Length = 246 Score = 33.5 bits (75), Expect = 0.44 Identities = 23/87 (26%), Positives = 41/87 (47%) Frame = -2 Query: 3869 DSGRQIHAAADRSIRRVDGLEAAGERETRARLHGQDRRDRPAPHERVQQATVDRERPAFA 3690 D ++ A +R+ R + G + RL G++RR + A + + + VDR A A Sbjct: 51 DQIERVRARYERTRRSLQRKGTRGAKRVLKRLSGRERRFQQAINHTISRRIVDR---AIA 107 Query: 3689 QRQVIGAEDLQDVANVERRRSAIQREI 3609 + + + EDL + R R + +R I Sbjct: 108 EGKGVRLEDLSGIRKSVRVRKSQRRRI 134 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,156,424 Number of Sequences: 14420 Number of extensions: 1033848 Number of successful extensions: 3973 Number of sequences better than 0.5: 9 Number of HSP's better than 0.5 without gapping: 2778 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3966 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4808123034 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig70 (8527 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818577.1|gp39 46 7e-05 ref|NP_944360.1|gp51 35 0.10 ref|NP_861884.1|Hoc head outer capsid protein 34 0.29 ref|NP_817363.1|gp25 33 0.50 >ref|NP_818577.1|gp39 Length = 351 Score = 45.8 bits (107), Expect = 7e-05 Identities = 38/134 (28%), Positives = 51/134 (38%), Gaps = 2/134 (1%) Frame = -3 Query: 3386 PVSDLSAGGTQRFENSAAL--AGSPVRMVSGSILTKWALIGYETGAAGVPVNDAAAYSTF 3213 P +D G FEN A + V +L + +G+E G G P+ A Sbjct: 213 PTAD-GKGRWAEFENGTIYWSANTGAFAVPKHLLETYTALGWEQGELGYPIAPHAVIP-- 269 Query: 3212 GANTGMAQGFANGAIYAATGGPRNGQAYFVTGLILARYNALGGAVGDYGMPVGDEFVTAG 3033 + G Q F NG +Y G + + G I RY G G G P E G Sbjct: 270 --DGGDVQAFQNGVLYRKYGQG----GHVIKGAIGNRYRLNGWEAGFLGWPTSSEIKHGG 323 Query: 3032 VHQQNFEGGNFTWS 2991 + Q FEGG +S Sbjct: 324 MIYQTFEGGRIAFS 337 Score = 36.2 bits (82), Expect = 0.059 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%) Frame = -3 Query: 3458 AYVLGGAVLAAWQALGGVSGTLGYPVSDLS----AGGTQRFENSAALA--GSPVRMVSGS 3297 A+ + +L + ALG G LGYP++ + G Q F+N G ++ G+ Sbjct: 237 AFAVPKHLLETYTALGWEQGELGYPIAPHAVIPDGGDVQAFQNGVLYRKYGQGGHVIKGA 296 Query: 3296 ILTKWALIGYETGAAGVPVN 3237 I ++ L G+E G G P + Sbjct: 297 IGNRYRLNGWEAGFLGWPTS 316 >ref|NP_944360.1|gp51 Length = 521 Score = 35.4 bits (80), Expect = 0.10 Identities = 98/431 (22%), Positives = 151/431 (35%), Gaps = 40/431 (9%) Frame = -3 Query: 3455 YVLGGAVLAAWQALGGVSGTLGYPVSDLSAGGTQRFENSAALAGSPVRMVSGSILTKWA- 3279 Y+ G A+ A Q + +G G V+ +AG T N +AG + +G+ TK A Sbjct: 127 YIYGAALGAIGQPVFDGAGVRG--VATQTAGSTNWTTNG--VAGYVLNNQAGATATKSAV 182 Query: 3278 -LIGY--------ETGAAGVPVNDAAAYSTFGANTG-----------MAQGFANGAIYAA 3159 L+G ++ V+D ++ A G ++ NG Y A Sbjct: 183 GLLGINICAVDNCQSWGTSTIVSDVLGFTGVSAGVGRQLYGNESDLNVSSPNTNGIAYMA 242 Query: 3158 TGGPRNGQAYFVTGLILARYNALGGAVGDYGMPVGDEFVTAGVH-------QQNFEGGNF 3000 G AY V + Y G A +Y D T ++ N Sbjct: 243 AGTALTPSAYLVGFQVSNLYGGTG-AKWNYAFSSPDGNSTNAMYIGLTATSGNNLSSQPI 301 Query: 2999 TWSAGDAAAKEHPAAKVPGLIVSPGSVSAGSQARLAIVGFPTNSTIRVSITGQPDFTVTT 2820 ++ DA +H P L+ +P + + A ++ NST G P Sbjct: 302 VFNYTDAGGAKH----APQLLATPNGLQTTAGA---LIPGSANSTA----LGLP------ 344 Query: 2819 ANGAYSWDMFFPLTSKSGSLAIHAADSKSNTADGTLTVRGFTDNRLPVVKVQGDNQTGPP 2640 A W + G+ A+ + S SN A TLTV D + +K QG+ T P Sbjct: 345 ---ALPWGTIY------GTTAVISDTSASNQA--TLTVAAPNDTQGASIKFQGNGVTTPT 393 Query: 2639 -------GALLPV-----SLRVALRDAGGNPVVGAPVTFEASSGAQLSAPAVTTDANGQA 2496 GA V ++ L D+G V G +T +GA A NG Sbjct: 394 KTIRVQNGAFQWVNDAFNNIIATLSDSGSLSVNG-NITTPTGTGALPVYTATGASLNGPH 452 Query: 2495 ETFVRLQTTEGVALVRADAPAVASGPVTFGLRSAASSLSNFPKAVQSGDAKLGNGTATIA 2316 A+ ++A + + VTF +A SS S++ + D N Sbjct: 453 ------------AVQGSNALSAGAATVTFSGAAAFSSASSY--VCTANDTTAANAVRVNQ 498 Query: 2315 QKGALVTAVSS 2283 G VT V + Sbjct: 499 TSGTSVTFVGT 509 >ref|NP_861884.1|Hoc head outer capsid protein Length = 471 Score = 33.9 bits (76), Expect = 0.29 Identities = 24/75 (32%), Positives = 37/75 (49%) Frame = -3 Query: 5525 VTLSTTSNSMTAGQAATLTAVVTAPSGNTGVVWSYSPHVGTLGVGNNLDGSSVTSTNNYV 5346 ++LS S + T G ATLTA VT G+T +V+S+ +N+ S+ STN Y Sbjct: 290 ISLSPPSVNTTVGGTATLTASVTGAPGDTNIVYSWKK--------DNVAESN--STNTYS 339 Query: 5345 APATITVRQTVTITA 5301 + T+ + A Sbjct: 340 IDTSSAGTHTIKVEA 354 >ref|NP_817363.1|gp25 Length = 320 Score = 33.1 bits (74), Expect = 0.50 Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 23/137 (16%) Frame = -3 Query: 3410 GVSGTLGYPVSDLSAGGT-QRFENSAALAG-------SPVRMVSGSILTKWALIGYETGA 3255 G SG + +GGT +RF +S+ +G + V + + + G Sbjct: 61 GASGCWVTLIGGGGSGGTGRRFTSSSNRSGGGGGGGGAKVFRTFVPVASMGSTYSVTRGL 120 Query: 3254 AGVPVNDAAAYSTFG--ANTGMAQGFANGAIY-------------AATGGPRNGQAYFVT 3120 G V D A G N G A F++G+I + +G P +G FV+ Sbjct: 121 GGAAVTDTGASGPNGKPGNAGGASTFSSGSIQLIANGGGGGGGGTSTSGSPGSGGTAFVS 180 Query: 3119 GLILARYNALGGAVGDY 3069 G+ N G GDY Sbjct: 181 GISSTTANGSAGGAGDY 197 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,110,672 Number of Sequences: 14420 Number of extensions: 855658 Number of successful extensions: 3304 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 2285 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3295 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 4159640597 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig71 (8594 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_665939.1|unknown 34 0.29 ref|NP_818439.1|gp140 33 0.38 >ref|NP_665939.1|unknown Length = 279 Score = 33.9 bits (76), Expect = 0.29 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = -2 Query: 631 WQEIRVEEQRLLMIRDHEEGMSISELAEVYGVSRKTVYKWLERH 500 W++ V E L+ GMS+S++ + G S +TV++WL+ H Sbjct: 72 WRDEEVMEALYLL-----RGMSVSQIGDYLGCSGQTVWRWLDEH 110 >ref|NP_818439.1|gp140 Length = 266 Score = 33.5 bits (75), Expect = 0.38 Identities = 15/46 (32%), Positives = 29/46 (63%) Frame = -2 Query: 619 RVEEQRLLMIRDHEEGMSISELAEVYGVSRKTVYKWLERHDEQGFL 482 R+EE + L +EG++ E+A+ +G++ T+Y W+ R ++G L Sbjct: 225 RLEEYKRL----RDEGLTKKEIAKRFGLNESTLYDWINRQKKKGNL 266 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,911,261 Number of Sequences: 14420 Number of extensions: 1010712 Number of successful extensions: 3581 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 2665 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3572 length of database: 3,019,461 effective HSP length: 104 effective length of database: 1,519,781 effective search space used: 4194595560 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig72 (10,910 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_112079.1|capsid protein 34 0.28 ref|NP_958181.1|gene 5 protein 34 0.37 >ref|NP_112079.1|capsid protein Length = 423 Score = 34.3 bits (77), Expect = 0.28 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = -1 Query: 8309 WVKGHHFLKFGGSYWYEVRNDRAMANGSGSWTFTNTVTSQPSSPSYG 8169 ++K +KF +YW + + +A+ NG+ +FT TVT+ +S S G Sbjct: 261 FLKAGDQVKFTNTYWLQQQTKQALYNGATPISFTATVTADANSDSSG 307 >ref|NP_958181.1|gene 5 protein Length = 423 Score = 33.9 bits (76), Expect = 0.37 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = -1 Query: 8309 WVKGHHFLKFGGSYWYEVRNDRAMANGSGSWTFTNTVTSQPSSPSYG 8169 ++K +KF +YW + + +A+ NG+ +FT TVT+ +S S G Sbjct: 261 FLKAGDQVKFTNTYWLQQQTKQALYNGATPISFTATVTADANSDSGG 307 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,309,006 Number of Sequences: 14420 Number of extensions: 1391785 Number of successful extensions: 4515 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 3146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4511 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 5263021730 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig73 (9183 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_523337.1|tail tubular protein B 33 0.41 >ref|NP_523337.1|tail tubular protein B Length = 801 Score = 33.5 bits (75), Expect = 0.41 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Frame = -2 Query: 5438 ALSVYGSDAPAVRELSGDR---LHPALPYTSGEVLWAVRHEMALTVEDVLARRTRALFLN 5268 ++S Y D P +S DR L A+P++ +LW+ + + LT D+L+ R+ L L Sbjct: 388 SVSNYSDDDPIDVAVSHDRVSTLKYAVPFSEELLLWSDQAQFVLTASDILSSRSVGLNLT 447 Query: 5267 ARAAVQ 5250 + VQ Sbjct: 448 TQFDVQ 453 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,809,990 Number of Sequences: 14420 Number of extensions: 882227 Number of successful extensions: 3230 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 2446 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3225 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4448341755 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig74 (11,900 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817395.1|gp57 36 0.11 ref|NP_705629.1|gp01 35 0.23 ref|NP_958105.1|gp01 35 0.23 ref|NP_944309.1|gp01 34 0.31 ref|NP_203478.1|hypothetical protein 34 0.31 >ref|NP_817395.1|gp57 Length = 287 Score = 35.8 bits (81), Expect = 0.11 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Frame = +1 Query: 10411 AAASSVWKECSAKAWAERWNHAFAWTRLRCWSAA--TRGSRAWD---GSARTPA*STSSK 10575 AA S+ W + AW+ W+ A + WSAA GS AW +A + A S + Sbjct: 172 AAGSAAWSAAGSAAWSAAWSAAESAAGSAAWSAAWSAAGSAAWSAAWSAAGSAAGSAAES 231 Query: 10576 AAGFSSGN 10599 AA ++G+ Sbjct: 232 AARSAAGS 239 >ref|NP_705629.1|gp01 Length = 295 Score = 34.7 bits (78), Expect = 0.23 Identities = 50/213 (23%), Positives = 71/213 (33%), Gaps = 17/213 (7%) Frame = -1 Query: 5279 SIPVTMRVTTQPIAQASSSHVQVRLAQGAPPLTTAVSLSNXXXXXXXXXXXLVNGAAWLT 5100 +IP+ V + P+AQ V+V+L G P T + + T Sbjct: 8 TIPIANGVVSVPMAQGGKGQVEVQLF-GPAPATGTLKVEGLQWTGTYQVLQGATAINLAT 66 Query: 5099 ATTAGNAAVL-----------TFDAGSMSPGTYSGTVTLTSNAANIIAPIPVDFTVVAKG 4953 A G L TF + S G SGT +T A +A +G Sbjct: 67 ALAGGGTIALTEHGHYRALRFTFTGVTGSTGPLSGTAYVTDGAIADLA---------FQG 117 Query: 4952 APVINYQGVVDNGTFAAGDTVARGDVMVVLGDQLSF---APLTVG---KAPPLDTQVGGA 4791 +N QG V++ V LG Q F P G A + + Sbjct: 118 LRALNVQGYVESN--------------VKLGYQFYFQYMLPTIAGGGTNAVKIAFRTAAQ 163 Query: 4790 SVTVNGRQAPMYYSSYGQLAFQLPYEISNGTAV 4692 V + R +S G F+ P IS GTA+ Sbjct: 164 PVLIKDRALYALGNSVGLQLFKAPTGISGGTAI 196 >ref|NP_958105.1|gp01 Length = 295 Score = 34.7 bits (78), Expect = 0.23 Identities = 50/213 (23%), Positives = 71/213 (33%), Gaps = 17/213 (7%) Frame = -1 Query: 5279 SIPVTMRVTTQPIAQASSSHVQVRLAQGAPPLTTAVSLSNXXXXXXXXXXXLVNGAAWLT 5100 +IP+ V + P+AQ S V+V+L G P T + + T Sbjct: 8 TIPIANGVVSVPMAQGSKGQVEVQLF-GPAPATGTLKVEGLQWTGTYQVLQGATAINLAT 66 Query: 5099 ATTAGNAAVL-----------TFDAGSMSPGTYSGTVTLTSNAANIIAPIPVDFTVVAKG 4953 A G L TF + S G SGT +T +A +G Sbjct: 67 ALAGGGTIALTEHGHYRALRFTFTGVTGSTGPLSGTAYVTDGTIADLA---------FQG 117 Query: 4952 APVINYQGVVDNGTFAAGDTVARGDVMVVLGDQLSF---APLTVG---KAPPLDTQVGGA 4791 +N QG V++ V LG Q F P G A + + Sbjct: 118 LRALNVQGYVESN--------------VKLGYQFYFQYMLPTIAGGGTNAVKIAFRTAAQ 163 Query: 4790 SVTVNGRQAPMYYSSYGQLAFQLPYEISNGTAV 4692 V + R +S G F+ P IS GTA+ Sbjct: 164 PVLIKDRALYALGNSVGLQLFKAPTGISGGTAI 196 >ref|NP_944309.1|gp01 Length = 295 Score = 34.3 bits (77), Expect = 0.31 Identities = 50/213 (23%), Positives = 71/213 (33%), Gaps = 17/213 (7%) Frame = -1 Query: 5279 SIPVTMRVTTQPIAQASSSHVQVRLAQGAPPLTTAVSLSNXXXXXXXXXXXLVNGAAWLT 5100 +IP+ V + P+AQ S V+V+L G P + + T Sbjct: 8 TIPIANGVVSVPMAQGSKGQVEVQLF-GPAPAAGTLKVEGLQWTGTYQVLQGATAINLAT 66 Query: 5099 ATTAGNAAVL-----------TFDAGSMSPGTYSGTVTLTSNAANIIAPIPVDFTVVAKG 4953 A G L TF + S G SGT +T A +A +G Sbjct: 67 ALAGGGTIALTEHGHYRALRFTFTGVTGSTGPLSGTAYVTDGAIADLA---------FQG 117 Query: 4952 APVINYQGVVDNGTFAAGDTVARGDVMVVLGDQLSF---APLTVG---KAPPLDTQVGGA 4791 +N QG V++ V LG Q F P G A + + Sbjct: 118 LRALNVQGYVESN--------------VKLGYQFYFQYMLPTIAGGGTNAVKIAFRTAAQ 163 Query: 4790 SVTVNGRQAPMYYSSYGQLAFQLPYEISNGTAV 4692 V + R +S G F+ P IS GTA+ Sbjct: 164 PVLIKDRALYALGNSVGLQLFKAPTGISGGTAI 196 >ref|NP_203478.1|hypothetical protein Length = 357 Score = 34.3 bits (77), Expect = 0.31 Identities = 48/204 (23%), Positives = 71/204 (34%), Gaps = 6/204 (2%) Frame = -1 Query: 4955 GAPVINYQGVVDNGTFAAGDTVARGDVMVVLGDQLSFAPLTVGKAPPLDTQVGGASVTVN 4776 GAP + + G D G + AG DV + + S + G P G +VT Sbjct: 90 GAPALTFSGDPDTGLYRAG----ADDVRMQVDGAQSLQFTSAGTVTPGTATAGTLAVTGT 145 Query: 4775 GRQAPMYYSSYGQLAFQLPYEISNGTAVVQVQRDGLSSNPVSVQVADRAPRLLLIGVGTY 4596 S G +F P ++G + + G++ + AD + G Y Sbjct: 146 S-------SFTGTASFTAPAAFNSGGPAAAL-KAGVADHTYLEFYADSDAPAVRSGYTGY 197 Query: 4595 GAIQNQDLSIPMPVGSFPGVNTHPAKAGDALTIYAIGLGPTNPGVVSGQPAPAT------ 4434 G D S+ V N G +T + L N PAPAT Sbjct: 198 GGAGTGDFSV---VNMMTAGNIRLVTPGQVVTDAPVRLASAN-------PAPATAFTNTL 247 Query: 4433 SPFAPLTATATINFGAGPGGMVVV 4362 +P + + + ATIN G V V Sbjct: 248 TPKSLVKSWATINTTGGGSSAVTV 271 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,653,076 Number of Sequences: 14420 Number of extensions: 1211967 Number of successful extensions: 4326 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 2998 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4314 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 5697894539 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig75 (9609 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_665928.1|unknown 37 0.050 ref|NP_818403.1|gp105 35 0.15 >ref|NP_665928.1|unknown Length = 99 Score = 36.6 bits (83), Expect = 0.050 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Frame = -2 Query: 9488 RSPPASTWKRA*RWYRLRANTSGSCRPEPCSAPAATSRRRPKLCKAAR--SATSPSAMPS 9315 RSP A+ + A R + +G RP CS SRR P++ + R AT+ S + Sbjct: 8 RSPTAT--RAATAKARRASRPTGRLRPSGCSRSRTASRRTPRISRRWRRHRATASSWTTT 65 Query: 9314 NPVSPNRKATATRQIANRRSDSIGICGSD 9228 ++P R T +R A R S G +D Sbjct: 66 AKLAPRRTLTKSRTTAKSRRRSSGCRSTD 94 >ref|NP_818403.1|gp105 Length = 266 Score = 35.0 bits (79), Expect = 0.15 Identities = 42/192 (21%), Positives = 69/192 (35%), Gaps = 6/192 (3%) Frame = -3 Query: 1555 SQFIEFHRAAGPGPHPLAIMIHGGFWRARYDXXXXXXXXXXXXXXXXXXXXLEYRRVGEP 1376 +Q ++ P P+ + I GG W ++YR P Sbjct: 24 NQKLDIWLPESPENAPVFMFIPGGAWTIGDRRGQGYAIMSHLVQQGWICVAIDYRTA--P 81 Query: 1375 GGGWPGTFDDVTAAVAFARDHAPDFGADSARTFVLGHSAGGHLALWVAAEIPSLTRXXXX 1196 WP F+DV+AA + R + +G V G SAGGH+A + S ++ Sbjct: 82 KNHWPAPFEDVSAAFHWVRANIHQYGGGDFLA-VGGASAGGHMASLLGLTDWSFSKPDAV 140 Query: 1195 XXXXXXXXAHSLALSNCAVGEFLG----GAPGEFPARYA--FADPARPTPVPRLLIHGDA 1034 S +L + + ++ G R + R P P L+I GD Sbjct: 141 VSLYGVYDWTSKSLDHWLINRYVQHVVVGRRDHDTLRISSPIHQIHRDAP-PFLIIQGDC 199 Query: 1033 DTIVPIELSRRF 998 D + P +++F Sbjct: 200 DLVTPQSGAKKF 211 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,861,109 Number of Sequences: 14420 Number of extensions: 993161 Number of successful extensions: 3433 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 2557 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3428 length of database: 3,019,461 effective HSP length: 105 effective length of database: 1,505,361 effective search space used: 4662103017 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig76 (12,288 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_720276.1|GtrB 55 1e-07 ref|YP_006358.1|GtrB 55 1e-07 ref|NP_059582.1|O-antigen conversion protein 55 1e-07 ref|NP_599056.1|bactoprenol glucosyltransferase 52 1e-06 ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase 41 0.003 ref|NP_046574.1|unknown 38 0.029 ref|YP_053020.1|hypothetical protein 34 0.32 ref|YP_024424.1|tail fiber 34 0.32 >ref|NP_720276.1|GtrB Length = 325 Score = 55.5 bits (132), Expect = 1e-07 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 2/179 (1%) Frame = -3 Query: 5533 KLSIILPVYNEAATLEPVLRSVLE-KKIEGLQKEVVIVESNSNDGTRDIVLKYRDHPEVV 5357 K+S+++PV+NE T+ ++V E +++ + E+V + S D T I+ K +V Sbjct: 17 KISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPLV 76 Query: 5356 IVLE-DRAQGKGHAVRTALGHATGDFILIQDGDREYDIEDYDVLLEPLVSGRSSFILGSR 5180 I L R GK A+ L HATGD ++ D D + IE L+E +G + +L R Sbjct: 77 IPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAG-ADMVLAKR 135 Query: 5179 HGGRTWKVRRFKGKPFTGLLLNFGHWFFKTLVNVAFRLKLDDPFTMYKIFRRDCLSGLK 5003 T R K K WF+K L N K+++ +++ R + +K Sbjct: 136 SDRST--DGRLKRKT--------AEWFYK-LHNKISNPKIEENVGDFRLMSRAVVENIK 183 >ref|YP_006358.1|GtrB Length = 310 Score = 55.5 bits (132), Expect = 1e-07 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 2/179 (1%) Frame = -3 Query: 5533 KLSIILPVYNEAATLEPVLRSVLE-KKIEGLQKEVVIVESNSNDGTRDIVLKYRDHPEVV 5357 K+S+++PV+NE T+ ++V E +++ + E+V + S D T I+ K +V Sbjct: 2 KISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPLV 61 Query: 5356 IVLE-DRAQGKGHAVRTALGHATGDFILIQDGDREYDIEDYDVLLEPLVSGRSSFILGSR 5180 I L R GK A+ L HATGD ++ D D + IE L+E +G + +L R Sbjct: 62 IPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAG-ADMVLAKR 120 Query: 5179 HGGRTWKVRRFKGKPFTGLLLNFGHWFFKTLVNVAFRLKLDDPFTMYKIFRRDCLSGLK 5003 T R K K WF+K L N K+++ +++ R + +K Sbjct: 121 SDRST--DGRLKRKT--------AEWFYK-LHNKISNPKIEENVGDFRLMSRAVVENIK 168 >ref|NP_059582.1|O-antigen conversion protein Length = 310 Score = 55.5 bits (132), Expect = 1e-07 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 2/179 (1%) Frame = -3 Query: 5533 KLSIILPVYNEAATLEPVLRSVLE-KKIEGLQKEVVIVESNSNDGTRDIVLKYRDHPEVV 5357 K+S+++PV+NE T+ ++V E +++ + E+V + S D T I+ K +V Sbjct: 2 KISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPLV 61 Query: 5356 IVLE-DRAQGKGHAVRTALGHATGDFILIQDGDREYDIEDYDVLLEPLVSGRSSFILGSR 5180 I L R GK A+ L HATGD ++ D D + IE L+E +G + +L R Sbjct: 62 IPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAG-ADMVLAKR 120 Query: 5179 HGGRTWKVRRFKGKPFTGLLLNFGHWFFKTLVNVAFRLKLDDPFTMYKIFRRDCLSGLK 5003 T R K K WF+K L N K+++ +++ R + +K Sbjct: 121 SDRST--DGRMKRKT--------AEWFYK-LHNKISNPKIEENVGDFRLMSRAVVENIK 168 >ref|NP_599056.1|bactoprenol glucosyltransferase Length = 307 Score = 52.0 bits (123), Expect = 1e-06 Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 3/180 (1%) Frame = -3 Query: 5533 KLSIILPVYNEAATLEPVLRSVLE-KKIEGLQKEVVIVESNSNDGTRDIV--LKYRDHPE 5363 K+S+++PV+NE + ++V E ++++ + E+V + S D T I+ L D P Sbjct: 2 KISLVVPVFNEEEAIPVFYKTVREFQELKPYEVEIVFINDGSKDATESIINALAVSD-PL 60 Query: 5362 VVIVLEDRAQGKGHAVRTALGHATGDFILIQDGDREYDIEDYDVLLEPLVSGRSSFILGS 5183 VV + R GK A+ L HA+GD ++ D D + IE L+E +G + +L Sbjct: 61 VVPLSFTRNFGKEPALFAGLDHASGDAVIPIDVDLQDPIEVIPHLIEKWQAG-ADMVLAK 119 Query: 5182 RHGGRTWKVRRFKGKPFTGLLLNFGHWFFKTLVNVAFRLKLDDPFTMYKIFRRDCLSGLK 5003 R T R K K WF+K L N K+++ +++ R+ + +K Sbjct: 120 RSDRST--DGRLKRKT--------AEWFYK-LHNKISTPKIEENVGDFRLMSREVVENIK 168 >ref|NP_835519.1|probable ss-1,3-N-acetylglucosaminyltransferase Length = 327 Score = 41.2 bits (95), Expect = 0.003 Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 5/97 (5%) Frame = -3 Query: 5536 RKLSIILPVYNEAATLEPVLRSVLEKKIEGLQKEVVIVESNSNDG--TRDIVLKYRDHPE 5363 +K+S+I+P +N L + SVL + ++ E++I++ +SND T +++ KY+ Sbjct: 2 KKVSVIMPTFNNGEKLHRTISSVLNQTMKSTDYELIIIDDHSNDNGETLNVIKKYKG--- 58 Query: 5362 VVIVLEDRAQGKGHAV---RTALGHATGDFILIQDGD 5261 ++ + + G+A T L + +++ D D Sbjct: 59 -LVRFKQLKKNSGNASVPRNTGLKMSKAEYVFFLDSD 94 >ref|NP_046574.1|unknown Length = 422 Score = 37.7 bits (86), Expect = 0.029 Identities = 27/91 (29%), Positives = 44/91 (48%) Frame = -3 Query: 5512 VYNEAATLEPVLRSVLEKKIEGLQKEVVIVESNSNDGTRDIVLKYRDHPEVVIVLEDRAQ 5333 VYNE+ ++ L SV + E+++++S S D T DI+ D P+V I E Sbjct: 62 VYNESKRIKKCLNSVKDDF-----NEIIVLDSYSTDDTVDIIKC--DFPDVEIKYEKWKN 114 Query: 5332 GKGHAVRTALGHATGDFILIQDGDREYDIED 5240 +A + +AT ++I D D Y E+ Sbjct: 115 DFSYARNKIIEYATSEWIYFIDADNLYSKEN 145 >ref|YP_053020.1|hypothetical protein Length = 357 Score = 34.3 bits (77), Expect = 0.32 Identities = 17/32 (53%), Positives = 22/32 (68%) Frame = +2 Query: 5105 VPEIQEQSGKGLAFEPADLPGAAAVARTQDKT 5200 +P IQE++GK L F+PA P AAA R +D T Sbjct: 133 LPPIQERAGKFLGFDPAGNPYAAAPIRGEDGT 164 >ref|YP_024424.1|tail fiber Length = 357 Score = 34.3 bits (77), Expect = 0.32 Identities = 17/32 (53%), Positives = 22/32 (68%) Frame = +2 Query: 5105 VPEIQEQSGKGLAFEPADLPGAAAVARTQDKT 5200 +P IQE++GK L F+PA P AAA R +D T Sbjct: 133 LPPIQERAGKFLGFDPAGNPYAAAPIRGEDGT 164 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,338,805 Number of Sequences: 14420 Number of extensions: 1331782 Number of successful extensions: 4482 Number of sequences better than 0.5: 8 Number of HSP's better than 0.5 without gapping: 3170 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4478 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 5888365748 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig77 (10,190 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_024425.1|outer capsid protein 53 7e-07 ref|YP_053021.1|hypothetical protein 48 2e-05 ref|NP_203461.1|hypothetical protein 34 0.26 ref|NP_075271.1|gp4 34 0.34 >ref|YP_024425.1|outer capsid protein Length = 460 Score = 52.8 bits (125), Expect = 7e-07 Identities = 58/239 (24%), Positives = 97/239 (40%), Gaps = 20/239 (8%) Frame = +2 Query: 1310 GGIGL--YRSQDRAATWTTAGSSMGSAKV---LSLVADPQNNAVI--YSGTSHGLY-KSA 1465 G +G+ RS D+ TW+ G+ G+ + +S + N V+ +G++ G+ +S Sbjct: 160 GAMGMEGMRSTDKGLTWSYIGNGFGTGQTSGTISAICVVGNVVVVGGIAGSNIGVAGRST 219 Query: 1466 DAGATWKAASGLPPDAVTAVAVDP---PNPATVYACMSEGLYQ-SKDSGVTWKAL----- 1618 + G +W TA A++ + A + G S D G TW AL Sbjct: 220 NGGVSWTKLPDFLNSGATASAINKILHVGGNKLIALLGSGYAAVSNDLGATWSALPRWLN 279 Query: 1619 ---LTGPVTSVAAAATRSGWVFAGRPGAPILRSQDGGVNWQEVSPPVSVNALAIDPTNAL 1789 + A T +G + A S++GGV W + + + PTN Sbjct: 280 SGGSDNNTSFFDGAVTATGAIIAVGQNGFASISRNGGVTWSALPRYLGM------PTNTS 333 Query: 1790 TVYAGTSRSGILLSTDGGATWTYSNRGMTRGSAPLPIYAIAIDPRIPQRLYAGTANGLY 1966 V G S + I++ + G N G+T + PL + + I I R AG +NG + Sbjct: 334 IVAIGVSDTAIVVGGNNGNCAISRNDGVTWSALPLN-FGVPIGSGIRDRSIAGASNGTF 391 >ref|YP_053021.1|hypothetical protein Length = 444 Score = 48.1 bits (113), Expect = 2e-05 Identities = 74/290 (25%), Positives = 114/290 (39%), Gaps = 31/290 (10%) Frame = +2 Query: 1352 WTTAGSSMGSAKVLSLVADPQNNAVIYSGTSHGLYKSADAGATWKA-----ASGLPPDAV 1516 WT + S+ + + A NN ++ + S S + GATW + +G+P Sbjct: 129 WTNVSTFAASSPPILVRAG--NNLLLLAYNSA---YSTNGGATWNSLPQGLGTGVPSFQA 183 Query: 1517 T--AVAVDPPNPATVYACMSEGLYQSKDS--GVTWKALL------TGPVTSVAAAATRSG 1666 T A D VY +G Y +K + GV+W +L T V A + + Sbjct: 184 TPKGAASDGSTVVVVY----DGGYSAKSTNGGVSWVSLPRFFFSGTSAVNINCVAVSGNT 239 Query: 1667 WVFAGRPGAPILRSQDGGVNWQEVSPPVSVNALAIDPT------NALTVYAGTSR----- 1813 V AG G RS DGG W + + + D T + AG S Sbjct: 240 IVQAGASGYA-RRSTDGGSTWSNLPRGLGMRT---DGTITKMHGRGNVIVAGNSEQQNSD 295 Query: 1814 -SGILLSTDGGATWTYSNRGMT--RGSAPLPIYAIAIDPRIPQRLYAGTANGLYRSSDWG 1984 + + +ST+GGATWT N G GS + + I + TA S W Sbjct: 296 PTTLTISTNGGATWTGKNIGSPDGLGSRMATMCHVVDSSVIVYGMQLHTAISRNGGSTW- 354 Query: 1985 ADWAPAG--SGIGTRSVLSLAINPLDANYVYAGTARAGVFQSVDGGDNWT 2128 W P+G SG G+ + L ++ + + + AGT S + G +W+ Sbjct: 355 -TWLPSGLNSGSGSSNTTMLCMDSV-GDTIVAGTYNGSAAVSYNKGLSWS 402 >ref|NP_203461.1|hypothetical protein Length = 373 Score = 34.3 bits (77), Expect = 0.26 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Frame = +1 Query: 5329 APSCFPISPAAPITNTSSSTPARKAASTFSIATAWAASTPIAIARSCNR-SSTQSERTSA 5505 AP+ P +PAA T +++ PA++A + IAT+ A +P A +T +E A Sbjct: 20 APTPAPTTPAAVATAAATAAPAQEATAPTPIATSAAKESPAAPTGGTEEPGATPAEAAGA 79 Query: 5506 APHTSTGPCTFPRRMTASKPSP 5571 P + T A +P Sbjct: 80 KPSEAASTATAKPDEPAQSATP 101 >ref|NP_075271.1|gp4 Length = 356 Score = 33.9 bits (76), Expect = 0.34 Identities = 31/128 (24%), Positives = 47/128 (36%), Gaps = 3/128 (2%) Frame = +2 Query: 1619 LTGPVTSVAAAATRSGWVFAGRPGAPILRSQDGGVNWQE---VSPPVSVNALAIDPTNAL 1789 +T V V WVF+ +LR QDG + Q+ V+P ++ ++P A+ Sbjct: 5 ITADVRDVTGQPDNQQWVFS-----TVLRQQDGSILTQKQVRVNPVDGALSVELEPGFAI 59 Query: 1790 TVYAGTSRSGILLSTDGGATWTYSNRGMTRGSAPLPIYAIAIDPRIPQRLYAGTANGLYR 1969 VY G W G L ++A+ P L A NG Sbjct: 60 VVY-------------GEYRWFIEVPETDAGLWGLIATSVAVPPDTSAELLADAVNGYLD 106 Query: 1970 SSDWGADW 1993 ++ ADW Sbjct: 107 ANPPSADW 114 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,119,903 Number of Sequences: 14420 Number of extensions: 905147 Number of successful extensions: 3312 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 2340 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3296 length of database: 3,019,461 effective HSP length: 106 effective length of database: 1,490,941 effective search space used: 4905195890 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig78 (14,815 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_195123.1|virion structural protein 37 0.076 >ref|YP_195123.1|virion structural protein Length = 306 Score = 36.6 bits (83), Expect = 0.076 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Frame = +1 Query: 12274 VNAWYQHWAYGPGGGTYSLQKITRDP-----DPVTISVPLDGRWWLFPADGNHTYGPPGF 12438 V A Y+ + G GGG Y+ ++ RDP VP GRWWL N T+G P Sbjct: 197 VGAVYRTTSAGNGGGNYT-SRVMRDPRFYPSGAPDWRVPDGGRWWL----RNTTFGEPNG 251 Query: 12439 DY 12444 DY Sbjct: 252 DY 253 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,858,933 Number of Sequences: 14420 Number of extensions: 1432658 Number of successful extensions: 5227 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 3496 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5220 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 7060485729 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig79 (14,527 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945090.1|gp59 84 3e-16 ref|NP_046584.1|putative transglycosylase 71 4e-12 ref|NP_040700.1|hypothetical protein 52 2e-06 ref|YP_195258.1|hypothetical protein 49 1e-05 ref|NP_817697.1|gp19 47 7e-05 ref|YP_024421.1|Hypothetical protein 43 0.001 ref|YP_024980.1|major tail subunit 42 0.002 ref|NP_818345.1|gp44 42 0.002 ref|NP_817699.1|gp21 39 0.015 ref|NP_943811.1|gp33 39 0.020 ref|NP_817352.1|gp14 39 0.020 ref|NP_877470.1|Pro-and Ala-rich protein 39 0.020 ref|NP_817363.1|gp25 37 0.057 ref|NP_943810.1|gp32 37 0.075 ref|NP_817990.1|gp17 37 0.075 ref|NP_944302.1|conserved phage protein 37 0.075 ref|NP_958680.1|Bbp11 37 0.075 ref|NP_996573.1|hypothetical protein predicted by GeneMark 37 0.075 ref|NP_996621.1|hypothetical protein predicted by GeneMark 37 0.075 ref|NP_818208.1|gp135 36 0.098 ref|NP_075300.1|gp33 36 0.13 ref|NP_813780.1|internal virion protein D 35 0.22 ref|NP_817477.1|gp27 35 0.22 ref|NP_818617.1|gp79 35 0.22 ref|YP_024695.1|gp22 35 0.28 ref|NP_817692.1|gp15 34 0.37 ref|YP_077230.1|Hypothetical protein 34 0.49 >ref|NP_945090.1|gp59 Length = 429 Score = 84.3 bits (207), Expect = 3e-16 Identities = 82/376 (21%), Positives = 149/376 (39%), Gaps = 28/376 (7%) Frame = +2 Query: 10697 ALMKSEGNDHRAALLAGYLGWTLDAFDFFLVVFCLTAIGREFQQSDXXXXXXXXXXXXF- 10873 A + + HR A++A +G + FDF F I + F S Sbjct: 10 AAPSASSDTHRRAVIAVIVGNGFEWFDFISYSFFSVIIAKLFFPSTDDNLSLLLSVSTIG 69 Query: 10874 -----RPLGAIIFGLLADRYGRRLPLMLNLVFYSIVEVASGLAPNFR--------TFLIL 11014 RP+G I+ G +AD+ GRR L + + + G AP ++ ++ Sbjct: 70 VGFFMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVA 129 Query: 11015 RALFGIGMGGEWGVGASLAMEKVPPKLRGLLSGFLQQGYATGYLLAAICYFLL------- 11173 R L G GGE G + E+VP + G + ++Q +LA++ + Sbjct: 130 RLLQGFSAGGEMGGATAYLRERVPAERHGYYTSWIQASIGFAIILASVLAVFIVKCLDEQ 189 Query: 11174 -FERFGWRXXXXXXXXXXXXXIFVRARVKESEVWRKTKHDSWGQLMRAIVSHWKLFFYLV 11350 E +GWR I++R+R+ + + ++ + S + Sbjct: 190 QIESWGWRIPFLLGLGLGPVGIYIRSRLNDPGFPADERLGECAPVVEVVRSFSREALVGF 249 Query: 11351 FLMMAMNFAAHGTQDMYPTFLER--QWHFGVGMRAGVTGGSMIGAIIGGTLVGWISDKVG 11524 L++ ++ PT+ + + G A + G S++ + L+G +SD G Sbjct: 250 GLVVFWTVCSYVLLFYIPTYASKVLKLPSSTGFIAVLVGASIV--LFVTPLIGHLSDLFG 307 Query: 11525 RRRAMIGALLLATLVV-PLWAF---APSVPLLVLGAFLMQFLVQGAWGVVPAHLAELSPD 11692 RR + GALL+A + PL+A AP + L++ + ++ G + A L+++ PD Sbjct: 308 RRWFLAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVVFGLVIASYEGPILAALSDMFPD 367 Query: 11693 AVRGFLPGFGYQCGVL 11740 V Y V+ Sbjct: 368 GVLSTGISISYNLAVI 383 Score = 46.6 bits (109), Expect = 7e-05 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 8/106 (7%) Frame = +2 Query: 11483 IGGTLVGWISDKVGRRRAMIGALLLATLVVPLWAFAPS-------VPLLVLGAFLMQ-FL 11638 IGG ++G I+DKVGRR A+ + L T + FAP+ PL+++ A L+Q F Sbjct: 77 IGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFS 136 Query: 11639 VQGAWGVVPAHLAELSPDAVRGFLPGFGYQCGVLLASAVTYIEAVF 11776 G G A+L E P G+ + Q + A + + AVF Sbjct: 137 AGGEMGGATAYLRERVPAERHGYYTSW-IQASIGFAIILASVLAVF 181 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 70.9 bits (172), Expect = 4e-12 Identities = 49/140 (35%), Positives = 71/140 (50%) Frame = -1 Query: 1192 YRSDLVRNAQERELDPFLLAGLIRQESEFNPAAVSHAKAYGLTQVRPATGRLFARQAGVA 1013 Y S + A + +DP L+A +I+QES FN A S A GL Q+ PAT A+ GV Sbjct: 1422 YSSYINSAASKYNVDPALIAAVIQQESGFNAKARSGVGAMGLMQLMPAT----AKSLGVN 1477 Query: 1012 RVTTSVLCQPAANLKLGSSILRSMLDKQAGSVEQTLASYNAGPNRVVEWLRWNTYREPAE 833 P N+ G+ L L+K G+VE+ LA+YNAGP V+ + Sbjct: 1478 NAY-----DPYQNVMGGTKYLAQQLEKFGGNVEKALAAYNAGPGNVI------------K 1520 Query: 832 FVESIPFTETRDYVQAVLRN 773 + PF ET++YV+ ++ N Sbjct: 1521 YGGIPPFKETQNYVKKIMAN 1540 >ref|NP_040700.1|hypothetical protein Length = 265 Score = 52.0 bits (123), Expect = 2e-06 Identities = 34/92 (36%), Positives = 48/92 (52%) Frame = -1 Query: 1153 LDPFLLAGLIRQESEFNPAAVSHAKAYGLTQVRPATGRLFARQAGVARVTTSVLCQPAAN 974 LDP L+AG+++ ES NP S A GL Q+ PAT A+ GV P N Sbjct: 20 LDPRLVAGVVQTESSGNPRTTSGVGAMGLMQLMPAT----AKSLGVTNA-----YDPTQN 70 Query: 973 LKLGSSILRSMLDKQAGSVEQTLASYNAGPNR 878 + G+++LR LD+ G V L +Y+ G N+ Sbjct: 71 IYGGAALLRENLDRY-GDVNTALLAYHGGTNQ 101 >ref|YP_195258.1|hypothetical protein Length = 582 Score = 48.9 bits (115), Expect = 1e-05 Identities = 68/233 (29%), Positives = 85/233 (36%), Gaps = 18/233 (7%) Frame = -3 Query: 1406 ALGGARGPGGFRIAIRVADGRAAGIACDRIGFRGRFSVPGNASDEGHESRV--PGNAGSG 1233 A+ GARG G + G G R G FS+P ++S+ S V G+ G G Sbjct: 28 AVAGARGGTGGADS----GGPGGGYGDGRYGL---FSIPSSSSNRSWGSWVGFTGSNGPG 80 Query: 1232 GAAQVLGTAVPAAVPERPGAQCAGEGTGSVPAGGSDSAGIGVQPGSGITCEGVWTDAGAS 1053 G++ V+G PG GS AG + G G G E W+ GA Sbjct: 81 GSSAVVGG---------PG--------GSNGAGKNGDGGRGGNDG-----ESGWSGCGAG 118 Query: 1052 GDGTAVCATGRRGAGDDERVVPAGGESQAGQLDFAFDAGQAGGERGTDAGVV-------- 897 G V + AG D V+ AGG G F+ + G RG DAG Sbjct: 119 GGAATVFSL----AGSD--VIVAGGGGGGGGGAFSCGGPERPGARGGDAGNWVNTTSISP 172 Query: 896 --------QCGAKPGGGMAAVEHVPGAGGVRGVDSVHGDPGLRAGGVTERGDV 762 + G PGGG G GG G D G G GG G V Sbjct: 173 SNGGQGGDKSGDGPGGGGGGGGAPGGGGGGVGQDCSGGAGGGGGGGSRYNGSV 225 >ref|NP_817697.1|gp19 Length = 750 Score = 46.6 bits (109), Expect = 7e-05 Identities = 63/229 (27%), Positives = 82/229 (35%), Gaps = 23/229 (10%) Frame = -3 Query: 1400 GGARGPGGFRIA-----IRVADGRAAGIACDRIGFRGRFSVPGNASDE-----GHESRVP 1251 GG RG G +R DG GI G+ P + D G + P Sbjct: 524 GGGRGQTGDTARLGTDEVRTVDGGLGGIDG---GYNAVQLDPASIPDTVACTIGPAASTP 580 Query: 1250 GNAGSGGAAQVLGTAVPAAVPERPGAQCAGEG---TGSVPAGGSDSAGIGVQPGSGITCE 1080 G G + L +VP GA G G + S P G D + + T Sbjct: 581 GTTGGVTSFGSLAQSVPGI-----GAISNGVGFLASASKPGRGGDGGSAFMSRANSTTYT 635 Query: 1079 GVWTDAGASGDGTAVCATGRRGA-----GDDERVVPAGGESQAGQLDFAFDAGQAGGERG 915 + G +G+G+A+ A G GA G P GE +AG A G+AG + G Sbjct: 636 ---SSPGKAGEGSALAAGGAPGAANGGTGGAGATAPMAGERKAGGGGGAGGGGRAGNQSG 692 Query: 914 TDAGVVQ-----CGAKPGGGMAAVEHVPGAGGVRGVDSVHGDPGLRAGG 783 T G G GGG AA+ G G + G PG A G Sbjct: 693 TITGGTGGNGGFPGGASGGGGAAINI-----GTIGFNVAPGPPGTPANG 736 Score = 34.3 bits (77), Expect = 0.37 Identities = 46/168 (27%), Positives = 56/168 (33%), Gaps = 13/168 (7%) Frame = -3 Query: 1202 PAAVPER------PGAQCAGEGTGSVPAGGSDSAGIGVQPGSGITCEGVWTDAGASGDGT 1041 PA++P+ P A G TG V + GS + + PG G GV A AS Sbjct: 562 PASIPDTVACTIGPAASTPGT-TGGVTSFGSLAQSV---PGIGAISNGVGFLASAS---- 613 Query: 1040 AVCATGRRGAGDDERVVPAGGESQAGQLDFAFDAGQAGGERGTDAGVVQCGAKPGGG--- 870 GR G G + S+A + G+AG AG A G G Sbjct: 614 ---KPGRGGDGGSAFM------SRANSTTYTSSPGKAGEGSALAAGGAPGAANGGTGGAG 664 Query: 869 ----MAAVEHVPGAGGVRGVDSVHGDPGLRAGGVTERGDVPAPV*GRG 738 MA G GG G G GG G P G G Sbjct: 665 ATAPMAGERKAGGGGGAGGGGRAGNQSGTITGGTGGNGGFPGGASGGG 712 >ref|YP_024421.1|Hypothetical protein Length = 741 Score = 42.7 bits (99), Expect = 0.001 Identities = 55/209 (26%), Positives = 74/209 (35%), Gaps = 37/209 (17%) Frame = -3 Query: 1301 FSVPGNASDEGHESRVPGNAGSGGAAQVLGTAVP-------------AAVPERPGAQ--- 1170 ++ P A ++ V G G +A + T P AA P Sbjct: 443 YTTPPTAVNQNRTVSVVGTNSVGDSAPAVATVTPVSNFISQSTFTTNAAFTLHPDCTFVQ 502 Query: 1169 ---CAGEGTGSV--PAGGSDSAGIGVQPGSGITCEGVWTDAGASGDGTAVCATGRRGAGD 1005 C G G G AGG+DS G G G+ + + A G TA G G G Sbjct: 503 VQGCGGGGGGGSGRTAGGNDSIGGGGGGGAALVSV---LSSNAIGGQTATIVVGGGGGGA 559 Query: 1004 DERVVPAGGE-----SQAGQLDFAFDAGQAG-----------GERGTDAGVVQCGAKPGG 873 R + AG S AG + ++ G+AG G G ++ V GA Sbjct: 560 ANRAIAAGNGGNSSVSGAGIVGLSWTGGRAGANGVQGYYASGGNGGNNSSNVGAGAGASS 619 Query: 872 GMAAVEHVPGAGGVRGVDSVHGDPGLRAG 786 G AA G GG G G+ G R+G Sbjct: 620 GNAASGVSGGGGGGTG----PGNGGWRSG 644 Score = 37.4 bits (85), Expect = 0.044 Identities = 46/188 (24%), Positives = 61/188 (32%), Gaps = 25/188 (13%) Frame = -3 Query: 1412 SAALGGAR------GPGGFRIAIRVADGRAAGIACDRIGFRGRFSVPGNASDEGHESRVP 1251 S A+GG G GG +A G + G G G A G + Sbjct: 540 SNAIGGQTATIVVGGGGGGAANRAIAAGNGGNSSVSGAGIVGLSWTGGRAGANGVQGYYA 599 Query: 1250 GNAGSGGAAQVLGTAVPAAVPERPGAQCAGEGTGSVPA--------GGSDSAGIGVQPGS 1095 G + +G A+ G G G+ P GG +AG+G G+ Sbjct: 600 SGGNGGNNSSNVGAGAGASSGNAASGVSGGGGGGTGPGNGGWRSGNGGGSNAGVGTSNGN 659 Query: 1094 GITCEG--------VWTDAGAS---GDGTAVCATGRRGAGDDERVVPAGGESQAGQLDFA 948 G VW D A+ GDGTA ++G G GG S + Sbjct: 660 NAQAAGGGGGGNSAVWWDNAAAGKGGDGTA--SSGASGGNATGNGNGGGGGSGGTSILGN 717 Query: 947 FDAGQAGG 924 G AGG Sbjct: 718 GTDGSAGG 725 >ref|YP_024980.1|major tail subunit Length = 743 Score = 41.6 bits (96), Expect = 0.002 Identities = 55/205 (26%), Positives = 75/205 (36%), Gaps = 3/205 (1%) Frame = -3 Query: 1388 GPGGFRIAIRVADGRAAGIACDRIGFRGRFSVPGNASDEGHESRVPGNAG--SGGAAQVL 1215 G GG + V A G I G G A + GN G S A ++ Sbjct: 526 GGGGGAALVSVLSSNAIGGQTATIVIGG-----GGAGAPNVGTTFGGNGGNTSVSGAGII 580 Query: 1214 GTAVPAAVPERPGAQCAGEGTGSVP-AGGSDSAGIGVQPGSGITCEGVWTDAGASGDGTA 1038 G + R G + G G G+ AGG++SA G G G++ G G Sbjct: 581 GLSWTGGKGGRSGYRSDGSGNGAFGGAGGNNSANTGGGAG-GVSSNG----------GNG 629 Query: 1037 VCATGRRGAGDDERVVPAGGESQAGQLDFAFDAGQAGGERGTDAGVVQCGAKPGGGMAAV 858 V G G +++ V+ GG G GG G G + GGG +AV Sbjct: 630 VNGGGGGGGSNNDLVLRRGGNG----------GGSNGGIGGQGVGTTDGPSGGGGGNSAV 679 Query: 857 EHVPGAGGVRGVDSVHGDPGLRAGG 783 A RG + V G+ G + GG Sbjct: 680 -WWDNADAGRGGNGVTGNSGNQTGG 703 >ref|NP_818345.1|gp44 Length = 326 Score = 41.6 bits (96), Expect = 0.002 Identities = 44/168 (26%), Positives = 55/168 (32%), Gaps = 8/168 (4%) Frame = -3 Query: 1400 GGARGPGGFRIAIRVADGRAAGIACDRIGFRGRFSVPGNASDEGHESRV--------PGN 1245 GGARG + G A + G G +PG +G S P Sbjct: 158 GGARGAIALSGSSTQVSGGAGSLTSVTSGVAGAVVIPGAPGGKGAASSGSAEDGGDNPSG 217 Query: 1244 AGSGGAAQVLGTAVPAAVPERPGAQCAGEGTGSVPAGGSDSAGIGVQPGSGITCEGVWTD 1065 AG+GG G V + + PG G G S G + G G S G Sbjct: 218 AGAGGGG---GGRVSDSNSQTPG----GRGGNSAVGTGGERGGAGANGSSAADQTGGNPG 270 Query: 1064 AGASGDGTAVCATGRRGAGDDERVVPAGGESQAGQLDFAFDAGQAGGE 921 AG G G + G G + GG G A G AGG+ Sbjct: 271 AGGGGGGGNNSGSTTTGHGGNGGKYGGGGGGSGGHRTNARRYGGAGGD 318 Score = 38.5 bits (88), Expect = 0.020 Identities = 52/206 (25%), Positives = 67/206 (32%) Frame = -3 Query: 1400 GGARGPGGFRIAIRVADGRAAGIACDRIGFRGRFSVPGNASDEGHESRVPGNAGSGGAAQ 1221 GG+ G GG DG ++ + G + G ++V G AGS + Sbjct: 132 GGSTGFGG-------TDGGSSSFLSGSVSLIAGGGARGAIALSGSSTQVSGGAGSLTSV- 183 Query: 1220 VLGTAVPAAVPERPGAQCAGEGTGSVPAGGSDSAGIGVQPGSGITCEGVWTDAGASGDGT 1041 G A +P PG + A +GS GG + +G G G G G D Sbjct: 184 TSGVAGAVVIPGAPGGKGAAS-SGSAEDGGDNPSGAGAGGGGG----------GRVSDSN 232 Query: 1040 AVCATGRRGAGDDERVVPAGGESQAGQLDFAFDAGQAGGERGTDAGVVQCGAKPGGGMAA 861 + GR GG S G GGERG GA Sbjct: 233 SQTPGGR------------GGNSAVG----------TGGERG--------GA-------- 254 Query: 860 VEHVPGAGGVRGVDSVHGDPGLRAGG 783 GA G D G+PG GG Sbjct: 255 -----GANGSSAADQTGGNPGAGGGG 275 >ref|NP_817699.1|gp21 Length = 348 Score = 38.9 bits (89), Expect = 0.015 Identities = 41/109 (37%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Frame = -3 Query: 1154 TGSVPAGGSDSAGIGVQPGSGITCEGVWTDAGASG-DGTAVCATGRRGAGDDE-RVVPAG 981 TG V AGG+ SA G P G T G T A G GTA G + A D R V Sbjct: 237 TGVVGAGGAGSAA-GFNPARGQT--GGSTTAATDGWSGTATGGVGGQNAIDPNGRAVSPL 293 Query: 980 GESQAGQLDFAFDAGQAGGERGTDAGVVQCGAKPGGGMAAVEHVPGAGG 834 ++ +GQ + A +A G G G PGGG AA E AGG Sbjct: 294 TQTVSGQT-YTGGAERAAGASGNP------GNPPGGGGAAAEFTGQAGG 335 >ref|NP_943811.1|gp33 Length = 386 Score = 38.5 bits (88), Expect = 0.020 Identities = 48/170 (28%), Positives = 56/170 (32%), Gaps = 31/170 (18%) Frame = -3 Query: 1178 GAQCAGEGTGSVPAGGSDSAG---------------------IGVQPGSGITCEGVWTDA 1062 G C G G G V AGG AG + V PGS + G Sbjct: 233 GGGCGGRGGGPVLAGGGGYAGSYGTVLLRRGVDIPWSTTMFYMNVGPGSAGSSGGYLVSD 292 Query: 1061 GASGDG----TAVCATGRRGAGDDERVVPAGGESQAGQLDFAFDAGQAGGERGTDA---- 906 + G T AT G+G GG + + Q RG DA Sbjct: 293 PSPGTASLCTTTALATLASGSG--------GGPNYSTQ-------------RGQDAPDLS 331 Query: 905 --GVVQCGAKPGGGMAAVEHVPGAGGVRGVDSVHGDPGLRAGGVTERGDV 762 G+ G K GG A VPG GG G PG AGG RG + Sbjct: 332 YNGISAVGGKSSGGSATAGGVPGGGGNGANPGSFGLPG-GAGGAGGRGQI 380 >ref|NP_817352.1|gp14 Length = 1188 Score = 38.5 bits (88), Expect = 0.020 Identities = 52/202 (25%), Positives = 65/202 (32%), Gaps = 42/202 (20%) Frame = -3 Query: 1316 GFRGRFSVPGNASDEGHESRV--------PGNAGSGGAAQVL------------------ 1215 G +GR + + HE V PGN GAA + Sbjct: 867 GPQGRLMEDRGSPTQNHEDHVHALYKPGNPGNINPSGAAAQVSVPTVAVAAPSAAAFPAS 926 Query: 1214 --GTAVPAAVPERPGAQCAGEG-------------TGSVPAGGSDSAGIGVQPGSGITCE 1080 G VP +V P AQ AG G +G+ P + AG G PG Sbjct: 927 GSGGVVPVSVTNWP-AQGAGVGVPIPTSGAGATAASGAAPGSPASGAGAGPLPGPAPVSS 985 Query: 1079 GVWTDAGASGDGTAVCATGRRGAGDDERVVPAGGESQAG-QLDFAFDAGQAGGERGTDAG 903 G W A T G AG + + G + + A +G G G D G Sbjct: 986 GAWAPNPAPLPTTG-GGGGPMAAGAPQSLFTGGPTNTTNIGANVAPYSGSGSGGIGMDGG 1044 Query: 902 VVQCGAKPGGGMAAVEHVPGAG 837 A GGMA PGAG Sbjct: 1045 GALGMAVQAGGMALDAMAPGAG 1066 >ref|NP_877470.1|Pro-and Ala-rich protein Length = 322 Score = 38.5 bits (88), Expect = 0.020 Identities = 42/129 (32%), Positives = 50/129 (38%), Gaps = 4/129 (3%) Frame = +1 Query: 874 PPGLAPHCTTPASVPRSPPACPASNAKSSCPA*DSPPAGTTRSSSP----APRRPVAQTA 1041 PPGLA A++P P A P N P +P P AP++ T Sbjct: 10 PPGLA---NLVANIP--PAAAPTPNHVQVMP---NPVIQQQAPVQPGQVGAPQQLAIPTQ 61 Query: 1042 VPSPDAPASVHTPSHVIPLPG*TPIPAESDPPAGTDPVPSPAHCAPGRSGTAAGTAVPST 1221 P P P S TP H P+ +PA P P PA AP AAG +P Sbjct: 62 QPQP-VPTSAMTP-HYQPVA----VPAAGQPVVPQAPA-QPAPVAP----PAAGAVLPEN 110 Query: 1222 CAAPPEPAF 1248 PP PAF Sbjct: 111 LEVPPPPAF 119 >ref|NP_817363.1|gp25 Length = 320 Score = 37.0 bits (84), Expect = 0.057 Identities = 39/145 (26%), Positives = 48/145 (33%), Gaps = 5/145 (3%) Frame = -3 Query: 1253 PGNAG-----SGGAAQVLGTAVPAAVPERPGAQCAGEGTGSVPAGGSDSAGIGVQPGSGI 1089 PGNAG S G+ Q++ A G G G GS +G G SGI Sbjct: 137 PGNAGGASTFSSGSIQLI-------------ANGGGGGGGGTSTSGSPGSG-GTAFVSGI 182 Query: 1088 TCEGVWTDAGASGDGTAVCATGRRGAGDDERVVPAGGESQAGQLDFAFDAGQAGGERGTD 909 + AG +GD A A G G S + F G G G Sbjct: 183 SSTTANGSAGGAGDYNAAGAPGVDNTSGGAAGGGGGSGSDQSTIYFGGKGGDVTGASGGA 242 Query: 908 AGVVQCGAKPGGGMAAVEHVPGAGG 834 A+ G A + PG GG Sbjct: 243 GATFTSNAQNGPNQAPGQAGPGGGG 267 >ref|NP_943810.1|gp32 Length = 448 Score = 36.6 bits (83), Expect = 0.075 Identities = 38/128 (29%), Positives = 48/128 (37%), Gaps = 1/128 (0%) Frame = -3 Query: 1250 GNAGSGGAAQVLGTAVPAAVPERPGAQCAGEGTGSVPAGGSDSAGIGVQPGSGI-TCEGV 1074 G AG GG A GT V A + +G TG V AGG+ + G G+ TC V Sbjct: 316 GGAGRGGLA---GTPVTATLTVGTDIPVSGALTGVVGAGGASNGAAG-----GVSTCTTV 367 Query: 1073 WTDAGASGDGTAVCATGRRGAGDDERVVPAGGESQAGQLDFAFDAGQAGGERGTDAGVVQ 894 G +G D GG + L+ G GG GT + + Sbjct: 368 ---------GLTAPVNNADASGQD------GGNAPNVTLNGITYPGGRGGSSGTSSSAGE 412 Query: 893 CGAKPGGG 870 G PGGG Sbjct: 413 DGQDPGGG 420 >ref|NP_817990.1|gp17 Length = 1183 Score = 36.6 bits (83), Expect = 0.075 Identities = 45/167 (26%), Positives = 62/167 (37%), Gaps = 12/167 (7%) Frame = -3 Query: 1292 PGNASDEGHESR-------VPGNAGSGGAAQVLGTAVPAAVPERPGAQCAGEGTGSVPAG 1134 P NA D G + PG G+GG Q + + AA+P +G G +PAG Sbjct: 864 PPNAGDMGDMQQHGMSAGLPPGPVGAGG--QPVQGSDGAALPTD-----SGRTEGYIPAG 916 Query: 1133 GSDSAGIGVQPGSGITCEGV-----WTDAGASGDGTAVCATGRRGAGDDERVVPAGGESQ 969 +++ G SG+ G D AS TA A G+ AGG++ Sbjct: 917 AGNTSVAGTSFVSGLYNMGAEAINGLIDQAASAAATAASAAATAGS------FGAGGQAA 970 Query: 968 AGQLDFAFDAGQAGGERGTDAGVVQCGAKPGGGMAAVEHVPGAGGVR 828 FA G +RG G G G A +E + G R Sbjct: 971 GPAAAFAIGLGANAAKRGVSYGFQMAGI---GTDALIEQLTPFGAPR 1014 >ref|NP_944302.1|conserved phage protein Length = 532 Score = 36.6 bits (83), Expect = 0.075 Identities = 37/115 (32%), Positives = 47/115 (40%), Gaps = 1/115 (0%) Frame = +1 Query: 871 PPPGLAPHCTTPASVPRSPPACPA-SNAKSSCPA*DSPPAGTTRSSSPAPRRPVAQTAVP 1047 P P AP T P + +P A P + S+ PA + PA T +++PAP P QT Sbjct: 77 PDPNAAPATTQPVDMS-TPTATPLPAQQPSAAPA--AAPATPTTTTTPAPSSP--QTPQI 131 Query: 1048 SPDAPASVHTPSHVIPLPG*TPIPAESDPPAGTDPVPSPAHCAPGRSGTAAGTAV 1212 PDA P TP A S A P S G +G+ A T V Sbjct: 132 PPDAMKGTLMADSGSMAPAPTPADAVSAARAVDKPAQS------GTTGSIAATPV 180 >ref|NP_958680.1|Bbp11 Length = 720 Score = 36.6 bits (83), Expect = 0.075 Identities = 30/106 (28%), Positives = 48/106 (45%) Frame = -1 Query: 1078 AYGLTQVRPATGRLFARQAGVARVTTSVLCQPAANLKLGSSILRSMLDKQAGSVEQTLAS 899 A G+ QV P T A+ AG+ A N LG + + L G + + A+ Sbjct: 330 AVGIAQVMPDTAPEAAKLAGLPWDENRYRNDAAYNRALGMAYFQKQLRDFGGDLPKAYAA 389 Query: 898 YNAGPNRVVEWLRWNTYREPAEFVESIPFTETRDYVQAVLRNAEMY 761 YNAGP + L+ + ++ +P ET+DY V++N + Y Sbjct: 390 YNAGPGALQSALK---DAKDGNWLALLP-KETQDY---VVKNMQAY 428 >ref|NP_996573.1|hypothetical protein predicted by GeneMark Length = 720 Score = 36.6 bits (83), Expect = 0.075 Identities = 30/106 (28%), Positives = 48/106 (45%) Frame = -1 Query: 1078 AYGLTQVRPATGRLFARQAGVARVTTSVLCQPAANLKLGSSILRSMLDKQAGSVEQTLAS 899 A G+ QV P T A+ AG+ A N LG + + L G + + A+ Sbjct: 330 AVGIAQVMPDTAPEAAKLAGLPWDENRYRNDAAYNRALGMAYFQKQLRDFGGDLPKAYAA 389 Query: 898 YNAGPNRVVEWLRWNTYREPAEFVESIPFTETRDYVQAVLRNAEMY 761 YNAGP + L+ + ++ +P ET+DY V++N + Y Sbjct: 390 YNAGPGALQSALK---DAKDGNWLALLP-KETQDY---VVKNMQAY 428 >ref|NP_996621.1|hypothetical protein predicted by GeneMark Length = 720 Score = 36.6 bits (83), Expect = 0.075 Identities = 30/106 (28%), Positives = 48/106 (45%) Frame = -1 Query: 1078 AYGLTQVRPATGRLFARQAGVARVTTSVLCQPAANLKLGSSILRSMLDKQAGSVEQTLAS 899 A G+ QV P T A+ AG+ A N LG + + L G + + A+ Sbjct: 330 AVGIAQVMPDTAPEAAKLAGLPWDENRYRNDAAYNRALGMAYFQKQLRDFGGDLPKAYAA 389 Query: 898 YNAGPNRVVEWLRWNTYREPAEFVESIPFTETRDYVQAVLRNAEMY 761 YNAGP + L+ + ++ +P ET+DY V++N + Y Sbjct: 390 YNAGPGALQSALK---DAKDGNWLALLP-KETQDY---VVKNMQAY 428 >ref|NP_818208.1|gp135 Length = 251 Score = 36.2 bits (82), Expect = 0.098 Identities = 44/171 (25%), Positives = 55/171 (32%) Frame = -3 Query: 1289 GNASDEGHESRVPGNAGSGGAAQVLGTAVPAAVPERPGAQCAGEGTGSVPAGGSDSAGIG 1110 G +D G G+ G+GG A V G +P VP G G P + AG Sbjct: 106 GWGADGGTAFTYYGSGGNGGTASVSG--LPFEVPSGILVSGGKGGNGGAPGNNAGQAGSS 163 Query: 1109 VQPGSGITCEGVWTDAGASGDGTAVCATGRRGAGDDERVVPAGGESQAGQLDFAFDAGQA 930 G+G G G G + + G G G A Sbjct: 164 STNGAG---------GGGGGGGGSRSSNSTHGTGGS--------------------GGSA 194 Query: 929 GGERGTDAGVVQCGAKPGGGMAAVEHVPGAGGVRGVDSVHGDPGLRAGGVT 777 G G G+++ GAK G G GG G S G G GG T Sbjct: 195 SG--GNPTGIMKAGAKGNNG-------SGRGGSAG--SATGGRGGGGGGYT 234 Score = 33.9 bits (76), Expect = 0.49 Identities = 29/103 (28%), Positives = 40/103 (38%) Frame = -3 Query: 1316 GFRGRFSVPGNASDEGHESRVPGNAGSGGAAQVLGTAVPAAVPERPGAQCAGEGTGSVPA 1137 G G PGN + + S G G GG G++ + G+ + Sbjct: 145 GKGGNGGAPGNNAGQAGSSSTNGAGGGGGGGG--------------GSRSSNSTHGTGGS 190 Query: 1136 GGSDSAGIGVQPGSGITCEGVWTDAGASGDGTAVCATGRRGAG 1008 GGS S G +GI G + G+ G+A ATG RG G Sbjct: 191 GGSASGG----NPTGIMKAGAKGNNGSGRGGSAGSATGGRGGG 229 >ref|NP_075300.1|gp33 Length = 267 Score = 35.8 bits (81), Expect = 0.13 Identities = 48/178 (26%), Positives = 57/178 (32%), Gaps = 23/178 (12%) Frame = -3 Query: 1250 GNAGSGGAAQVLGTAVPAAVPERPGAQCAG-EGTGSVPAGGSDSAGIGVQPGSGITCEGV 1074 G G GG + +P A G G G A GS + G GS + G Sbjct: 87 GGGGGGGGGYIDRVWIPRASLGSTFTLIRGLGGAGGARAAGSSNGNNGAPGGSTVFSSGS 146 Query: 1073 -------------WTDAGASGDGTA--------VCATGRRGA-GDDERVVPAGGESQAGQ 960 T + ASG G A V ATG G G + P+ G+S+ Sbjct: 147 VSLTASGGAAGVKGTSSSASGSGGAGGTTSISGVSATGYTGGKGGNGGSSPSSGQSRT-- 204 Query: 959 LDFAFDAGQAGGERGTDAGVVQCGAKPGGGMAAVEHVPGAGGVRGVDSVHGDPGLRAG 786 D AGG G GV GG P G RG D G AG Sbjct: 205 -----DGSGAGG--GGGGGVRSNDNSFSGGSNGTSSGPAGNGGRGTDGSINTGGSNAG 255 Score = 35.0 bits (79), Expect = 0.22 Identities = 36/148 (24%), Positives = 50/148 (33%), Gaps = 12/148 (8%) Frame = -3 Query: 1397 GARGPGGFRIA--IRVADGRAAGIACDRIGFRGRFSVPGNASDEGHESRVPGNAGSGGAA 1224 G G GG R A +G G G + G A +G S G+ G+GG Sbjct: 116 GLGGAGGARAAGSSNGNNGAPGGSTVFSSGSVSLTASGGAAGVKGTSSSASGSGGAGGTT 175 Query: 1223 QVLGTAVPA----------AVPERPGAQCAGEGTGSVPAGGSDSAGIGVQPGSGITCEGV 1074 + G + + P ++ G G G GG S GS T G Sbjct: 176 SISGVSATGYTGGKGGNGGSSPSSGQSRTDGSGAGGGGGGGVRSNDNSFSGGSNGTSSGP 235 Query: 1073 WTDAGASGDGTAVCATGRRGAGDDERVV 990 + G DG+ G+G D V+ Sbjct: 236 AGNGGRGTDGSINTGGSNAGSGGDGYVL 263 >ref|NP_813780.1|internal virion protein D Length = 1392 Score = 35.0 bits (79), Expect = 0.22 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 1/108 (0%) Frame = -1 Query: 1195 PYRSDLVRNAQERELDPF-LLAGLIRQESEFNPAAVSHAKAYGLTQVRPATGRLFARQAG 1019 PY D +R A + P+ L I ES FNP A S GL Q ATG+ + Sbjct: 16 PY-DDAIRQAADANGVPYEYLHKKIFIESSFNPDAKSPTGPLGLGQFTKATGKAYGLMTD 74 Query: 1018 VARVTTSVLCQPAANLKLGSSILRSMLDKQAGSVEQTLASYNAGPNRV 875 R+ P ++ + R ++ G + + +YN G R+ Sbjct: 75 EDRL------DPIKSINASAQYTRDLMGTYKGDMLKVALAYNQGNGRL 116 >ref|NP_817477.1|gp27 Length = 946 Score = 35.0 bits (79), Expect = 0.22 Identities = 36/147 (24%), Positives = 51/147 (34%), Gaps = 16/147 (10%) Frame = -3 Query: 1397 GARGPGGFRIAIRVADGRAAGIACDRIGFRGRFSVPGNASDEGH---ESRVPGNAGSGGA 1227 G+ G GG ++ + DGR + G + N G S G G GG Sbjct: 786 GSGGSGGAKV-LTSGDGRGGANGGASVFSSGSVVITANGGGHGSGGTNSSSSGTRGLGGT 844 Query: 1226 AQVLG-TAVPAAV------------PERPGAQCAGEGTGSVPAGGSDSAGIGVQPGSGIT 1086 A +G T V A++ P G++ G G G GG S G+ T Sbjct: 845 ATAVGITGVTASLLSGANGGNGGSSPTSGGSKTDGAGAGGRGGGGKKSNDKTFNGGNNGT 904 Query: 1085 CEGVWTDAGASGDGTAVCATGRRGAGD 1005 +G + G G + T GD Sbjct: 905 SDGPAGNGGGGSSGGSGTGTDAGDGGD 931 >ref|NP_818617.1|gp79 Length = 151 Score = 35.0 bits (79), Expect = 0.22 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 6/94 (6%) Frame = +1 Query: 1024 PVAQTAVPSPDA--PASVHTPSHVIPLPG*TPIPAESD--PPAGTDPVPSPAHCAPGRSG 1191 P A VP P A P++ PS P+PG +PIP+ PP P P+ + G Sbjct: 49 PDAPKNVPIPPANLPSAPLQPSPA-PMPGGSPIPSVEGNMPPRSNGPSGRPSAPSQRPGG 107 Query: 1192 TAAGTAVPS--TCAAPPEPAFPGTRDSCPSSLAL 1287 + VP+ PP P P +++ C L L Sbjct: 108 STVVPTVPTGPPITPPPPPFPPPSQNPCAVGLVL 141 >ref|YP_024695.1|gp22 Length = 203 Score = 34.7 bits (78), Expect = 0.28 Identities = 54/199 (27%), Positives = 80/199 (40%), Gaps = 26/199 (13%) Frame = -1 Query: 1285 MRVMKGMNPEYLGMPVPAAPRKYWELLFPLPYRSDLVRNAQE---RELDPFLLAGLIRQE 1115 MRV+ LG P A + E L YR++L RNA+ + A I QE Sbjct: 1 MRVLIAFVVALLGAAAPVAAQVPAEAL---AYRAELTRNARAVWGMDAPVSSFAAQIHQE 57 Query: 1114 SEFNPAAVSHAKAYGLTQVRPATGRLFARQAGVARVTTSVLCQPAANLKLGSSILRSMLD 935 S + AVS A G++Q P+T A A A + + P+ +++ R + + Sbjct: 58 SRWRADAVSVVGARGMSQFMPSTVDWIA-GAYPAELGEAQPFNPSWSIRALVRYDRHLWE 116 Query: 934 K--QAGSVEQ---TLASYNAGPNRVV--------------EWL----RWNTYREPAEFVE 824 + AG+ E+ TL++YN G V W R+N R A Sbjct: 117 RITAAGACERMAMTLSAYNGGLGWVYRDQRVTAAGGADRQRWFGHVERFNAGRHAA---- 172 Query: 823 SIPFTETRDYVQAVLRNAE 767 F E R Y + +LR E Sbjct: 173 --AFRENRGYPRVILRTFE 189 >ref|NP_817692.1|gp15 Length = 1213 Score = 34.3 bits (77), Expect = 0.37 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 9/96 (9%) Frame = +1 Query: 1096 LPG*TPIPAESDPPA------GT---DPVPSPAHCAPGRSGTAAGTAVPSTCAAPPEPAF 1248 LPG TP SD A GT DP + + P +G A+ VP+ AAP + Sbjct: 930 LPGGTPFNWGSDAAAARRGIGGTGADDPAFTSHYYRPAVAGPAS---VPTIPAAPSVTVY 986 Query: 1249 PGTRDSCPSSLALPGTENRPRKPIRSQAMPAARPSA 1356 P T + PS+ A + + + A PA PS+ Sbjct: 987 PSTASASPSTAADIYSPANTNPALNNPATPATTPSS 1022 >ref|YP_077230.1|Hypothetical protein Length = 757 Score = 33.9 bits (76), Expect = 0.49 Identities = 33/133 (24%), Positives = 47/133 (35%) Frame = -3 Query: 1283 ASDEGHESRVPGNAGSGGAAQVLGTAVPAAVPERPGAQCAGEGTGSVPAGGSDSAGIGVQ 1104 +S+ S PG+ G GG++ P G G G+ S P G G Sbjct: 173 SSNNSPNSSSPGSGGGGGSSN----------PNSGGGSGGGGGSSSPPNSGG--GGGNNN 220 Query: 1103 PGSGITCEGVWTDAGASGDGTAVCATGRRGAGDDERVVPAGGESQAGQLDFAFDAGQAGG 924 P SG G SG G +TG + A + Q+G + A A Q+GG Sbjct: 221 PNSG----------GGSGGGGG--STGPNTQQVQNYISQAENDLQSGNISGALSALQSGG 268 Query: 923 ERGTDAGVVQCGA 885 + Q + Sbjct: 269 QLANQISYTQAAS 281 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,664,078 Number of Sequences: 14420 Number of extensions: 1371237 Number of successful extensions: 5470 Number of sequences better than 0.5: 27 Number of HSP's better than 0.5 without gapping: 3441 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5392 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 6920124033 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig80 (14,987 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 39 0.012 ref|YP_164321.1|hypothetical protein 36 0.13 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 39.3 bits (90), Expect = 0.012 Identities = 52/179 (29%), Positives = 61/179 (34%), Gaps = 2/179 (1%) Frame = +2 Query: 2888 PAGSTTPQCAAPACSGPPAVSR-AAEDRRRAPIVRALPLPPAGSASRSIALPPESAPARC 3064 PA +P P A SR AA RR P+ R P A PE AP Sbjct: 43 PARDRSPDHPEPDHPCRRAPSRPAAGPRRHPPVARTRPRTRA----------PECAPDPG 92 Query: 3065 PTAHPRSGPTA*ATPRGRERAILARPHPTPSRAPSRESRNSARAPRIASRGRAF*NSRRI 3244 P HP + A A P E A RP + R RAPR +R + Sbjct: 93 PAVHPAAPGCAPAAPAAPEYAPALRPRAPECDRGAHHLR--TRAPRT--------RTRAV 142 Query: 3245 AWGPSSR-RTPAAVSSGNRSPWRPADFPWELPPPRAPTARVRSETPLRVPSRRSASTTG 3418 GP +R RTP R RP P RV+ + V RR A G Sbjct: 143 PLGPGARVRTPVEDRRRTRRRRRP-----------DPRRRVQPRLGVGVHRRRGARRVG 190 Score = 37.0 bits (84), Expect = 0.059 Identities = 55/194 (28%), Positives = 64/194 (32%), Gaps = 16/194 (8%) Frame = +2 Query: 2879 RHRPAGSTTPQCAAPACSGPPAVSRAAEDRRRAPIVRALPLPPAGSASRSIALPPESAPA 3058 RH P T P+ AP C+ P P V P A + + PE APA Sbjct: 71 RHPPVARTRPRTRAPECAPDP-----------GPAVH----PAAPGCAPAAPAAPEYAPA 115 Query: 3059 ---RCPTAHPRSGPTA*ATPRGRERAILARPHPTPSRAPSRESRNSARAPRIASRGRAF* 3229 R P + PR R RA+ P R P + R + R R R R Sbjct: 116 LRPRAPECDRGAHHLRTRAPRTRTRAVPLGP-GARVRTPVEDRRRTRRRRRPDPRRRV-- 172 Query: 3230 NSRRIAWGPSSRRTPAAVSSGNRSPWRP----ADFPWELPPPRAPTA---------RVRS 3370 R+ G RR V R RP A P P P P A R R Sbjct: 173 -QPRLGVGVHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRRHRR 231 Query: 3371 ETPLRVPSRRSAST 3412 LR RR ST Sbjct: 232 RASLRPRHRRHRST 245 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 35.8 bits (81), Expect = 0.13 Identities = 51/178 (28%), Positives = 64/178 (35%), Gaps = 3/178 (1%) Frame = -3 Query: 3384 RSGVSDRT--RAVGARG-GGSSQGKSAGRQGDRLPDETAAGVRRLDGPHAILREFQNALP 3214 R GV + R V RG G+ G R+ D+ P VRRL R Sbjct: 384 RRGVQGQAGRRTVERRGLQGADAGGIRARRDDQEP------VRRLP------RRRAGVCR 431 Query: 3213 RDAIRGARAEFLLSREGAREGVGCGRAKIALSRPRGVAHAVGPDLGCAVGHRAGADSGGS 3034 D R + L R G G GRA+ A R R VG C RA D GG+ Sbjct: 432 ADRRREGQVRRLRGPRQGRVGQG-GRARCAGPRLRFDHSGVGEQGRCQGQGRADQDGGGA 490 Query: 3033 AIERDADPAGGSGSARTIGALRRSSAARETAGGPEQAGAAHCGVVDPAGLCRASGERR 2860 + + GG G + AG PE+ H GV P SG+R+ Sbjct: 491 --HQGVEVLGGRGRLQG-----------HPAGQPERGAVQHVGVPGPGRSLARSGQRQ 535 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,417,995 Number of Sequences: 14420 Number of extensions: 1499929 Number of successful extensions: 5495 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 3657 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5485 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 7145287587 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig81 (15,990 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,905,393 Number of Sequences: 14420 Number of extensions: 1628945 Number of successful extensions: 5735 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 3730 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5715 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 7556894820 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig82 (11,854 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945016.1|unknown 56 7e-08 ref|NP_945015.1|unknown 56 7e-08 ref|NP_046572.1|ABC transporter 45 1e-04 ref|NP_958267.1|hypothetical protein 41 0.002 ref|NP_040608.1|ea59 39 0.012 ref|YP_024538.1|putative ribose-phosphate pyrophosphokinase 38 0.021 ref|NP_064745.1|gp7 35 0.18 ref|NP_665939.1|unknown 34 0.40 >ref|NP_945016.1|unknown Length = 293 Score = 56.2 bits (134), Expect = 7e-08 Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 4/224 (1%) Frame = -2 Query: 3162 LDALKRSSAQRITAVLPYYGYARQDRKDKPRVPISAKLVAALLERAGADRVLTLDLHAAQ 2983 +D+L + T V + AR DR + K+ A L+ G D V LD H+ Sbjct: 75 VDSLVPQKSAMKTVVFGFLPNARYDRHMFKGDAAALKVFANLVNAMGFDAVCALDPHSNV 134 Query: 2982 IQGFFDIPVDHLFAMPVMIEYFRSQEIPALTVVSPDAGGVERARAFAKRLNSPLAIIDKR 2803 + F + V + Y I L V+PDAG ++ AK ++ P + K Sbjct: 135 AENLFKC-FQSMKQKDVAVHYANDPLIDYL--VAPDAGASKKIAETAKEVDKPYITMSKV 191 Query: 2802 RXXXXXXXXXXXV---GDVGGRNCLLVDDLIDTAGTLVKGTEALLEKGAASVSACATHAV 2632 R + D+ + +++DD+ D T V+ + L E GA V TH + Sbjct: 192 RNLKTGEITGMRILDDVDLTDKTVMILDDICDGGRTFVEAAKHLREAGAKRVELYVTHGI 251 Query: 2631 LSGPAVSRIEESALKEVVFTNSIPLSEAA-RNSTRIKSLSIAKL 2503 S V + ++ + + TNS L EA R T +++A L Sbjct: 252 FS-KDVENLLDNGIDHIYTTNS--LGEAKDRGLTHYSQVTVANL 292 >ref|NP_945015.1|unknown Length = 298 Score = 56.2 bits (134), Expect = 7e-08 Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 4/224 (1%) Frame = -2 Query: 3162 LDALKRSSAQRITAVLPYYGYARQDRKDKPRVPISAKLVAALLERAGADRVLTLDLHAAQ 2983 +D+L + T V + AR DR + K+ A L+ G D V LD H+ Sbjct: 80 VDSLVPQKSAMKTVVFGFLPNARYDRHMFKGDAAALKVFANLVNAMGFDAVCALDPHSNV 139 Query: 2982 IQGFFDIPVDHLFAMPVMIEYFRSQEIPALTVVSPDAGGVERARAFAKRLNSPLAIIDKR 2803 + F + V + Y I L V+PDAG ++ AK ++ P + K Sbjct: 140 AENLFKC-FQSMKQKDVAVHYANDPLIDYL--VAPDAGASKKIAETAKEVDKPYITMSKV 196 Query: 2802 RXXXXXXXXXXXV---GDVGGRNCLLVDDLIDTAGTLVKGTEALLEKGAASVSACATHAV 2632 R + D+ + +++DD+ D T V+ + L E GA V TH + Sbjct: 197 RNLKTGEITGMRILDDVDLTDKTVMILDDICDGGRTFVEAAKHLREAGAKRVELYVTHGI 256 Query: 2631 LSGPAVSRIEESALKEVVFTNSIPLSEAA-RNSTRIKSLSIAKL 2503 S V + ++ + + TNS L EA R T +++A L Sbjct: 257 FS-KDVENLLDNGIDHIYTTNS--LGEAKDRGLTHYSQVTVANL 297 >ref|NP_046572.1|ABC transporter Length = 705 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/78 (33%), Positives = 44/78 (56%) Frame = -3 Query: 8252 LSGGQMQRVAIARALVSSPEILIADEPTGNLDTVSGEQVLALLREAASRFGATILMATHS 8073 LS GQ QR+A+ARA++ P++LI DE N+D + + L+ E R I++ TH+ Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTK----LIYETLHRMDCLIILITHN 674 Query: 8072 AEAAAIADTRVNLRDGRI 8019 + + ++ R+ RI Sbjct: 675 DPSNFKYNKKLVFRNNRI 692 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 41.2 bits (95), Expect = 0.002 Identities = 30/86 (34%), Positives = 32/86 (37%) Frame = -1 Query: 7471 AWPRGRPRQSGSRHPRHRAALCADRKARRAQRREPAHAPRLPLEPARAQLYFARGRRLPD 7292 A PR P + +R PR RA CA P AP P P A R Sbjct: 67 AGPRRHPPVARTR-PRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRPRAPECDR 125 Query: 7291 LQHHLRQRGPAPRGDRHPARPGRRAR 7214 HHLR R P R P PG R R Sbjct: 126 GAHHLRTRAPRTRTRAVPLGPGARVR 151 >ref|NP_040608.1|ea59 Length = 525 Score = 38.9 bits (89), Expect = 0.012 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 2/56 (3%) Frame = -3 Query: 8648 SRRYTDGEQSVEVLHDISLAVEPGT-VTAFLGRSGCGKTTLLN-LAGAMDFPTSGE 8487 +R+ G + + ++++ P T + AF+GR+GCGKTT+LN + GA+ P + E Sbjct: 164 NRKSAPGFSDLTIPFEVTVNSMPSTNIHAFIGRNGCGKTTILNGMIGAITNPENNE 219 >ref|YP_024538.1|putative ribose-phosphate pyrophosphokinase Length = 302 Score = 38.1 bits (87), Expect = 0.021 Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 12/197 (6%) Frame = -2 Query: 3117 LPYYGYARQDRKDKPRVPI-SAKLVAALLERAGADRVLTLDLHAAQIQGFFDIPVDHLFA 2941 + Y Y+R DR ++ + S K + + V + H+ + Sbjct: 78 IAYLPYSRMDRVEEGHNNMFSLKYITEFINNLNYKSVWVAEPHSPVTEELLTNSFAIDVT 137 Query: 2940 MPVMIEYFRSQEIPALTVVSPDAGGVERARAFAKRLNSPLAIIDKRRXXXXXXXXXXXVG 2761 + ++ +Y E P +T+V PD G +R +R+ + I+ G Sbjct: 138 LKLLNQYIEMSEEP-VTIVLPDKGAYDRYLFDVERILME-SNIESYSIVYGEKKRDFETG 195 Query: 2760 DVGG-----------RNCLLVDDLIDTAGTLVKGTEALLEKGAASVSACATHAVLSGPAV 2614 + G NC+++DDL GT V +AL + +SVS THA + A Sbjct: 196 KIKGIKIIKDKNTLYDNCIILDDLTSYGGTFVGCKKALDKLKVSSVSLILTHAERAF-AE 254 Query: 2613 SRIEESALKEVVFTNSI 2563 + S K+++ T+S+ Sbjct: 255 GALLSSGFKDIIVTDSM 271 >ref|NP_064745.1|gp7 Length = 540 Score = 35.0 bits (79), Expect = 0.18 Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 2/137 (1%) Frame = -3 Query: 6437 STRSPSTITVNVPLSAAAIWRSCAATAGS-ASCPARIAMRFFAACRTPTAPS*ANHSPTV 6261 ++ S S T SAA++ + AAT+ S A+ A A AA T + A+ S TV Sbjct: 176 TSASGSASTATTQASAASVSATNAATSASNAATSATNAAASQAAAATSETNAAASES-TV 234 Query: 6260 TTFGRATGSPYPSVTAPSPSMLRASTTNTQAAR-AT*SLTAPHSSSTCPTNRRRTRPSIL 6084 TT S + T+ + + AST TQA AT + TA S++ T+ S Sbjct: 235 TT------SATNAATSEANAATSASTATTQATNAATSASTASTSATNAATSETNAASSAS 288 Query: 6083 PPAPTATRCSMPSNFAL 6033 A +AT + AL Sbjct: 289 SAASSATSAQASKDAAL 305 >ref|NP_665939.1|unknown Length = 279 Score = 33.9 bits (76), Expect = 0.40 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +1 Query: 11206 WQEIRVEEQRLLMIRDHEEGMSISELAEVYGVSRKTVYKWLERH 11337 W++ V E L+ GMS+S++ + G S +TV++WL+ H Sbjct: 72 WRDEEVMEALYLL-----RGMSVSQIGDYLGCSGQTVWRWLDEH 110 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,343,254 Number of Sequences: 14420 Number of extensions: 1108508 Number of successful extensions: 3969 Number of sequences better than 0.5: 8 Number of HSP's better than 0.5 without gapping: 2870 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3963 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 5674270203 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig83 (15,067 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_025041.1|putative transposase B 40 0.007 ref|NP_680494.1|tape measure protein 34 0.39 >ref|YP_025041.1|putative transposase B Length = 280 Score = 40.0 bits (92), Expect = 0.007 Identities = 18/49 (36%), Positives = 34/49 (69%), Gaps = 1/49 (2%) Frame = -1 Query: 15064 TLSKEEIY-WHRYQIFDELSAHVEEFIETYYNRQRLHSALGYRTPEEFE 14921 +L KE +Y ++ ++ +A + E++ +YNR+R+HS+LGY+TP + E Sbjct: 222 SLKKECVYPVPVFEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQVE 270 >ref|NP_680494.1|tape measure protein Length = 1621 Score = 34.3 bits (77), Expect = 0.39 Identities = 56/212 (26%), Positives = 88/212 (41%), Gaps = 10/212 (4%) Frame = -3 Query: 4925 TPIVDDPYTFGAIAAANSLSD----VYAMGGRPISALSILAYPAKGDMDDLAAILKGGAE 4758 T V P G +AAA S D + AMG + +I A + +D LA+ K + Sbjct: 171 TRAVTAPIAIGFVAAAKSAIDFNSQIQAMGPLLTNGGAITA-KYRAQLDQLASASKKWSV 229 Query: 4757 KMHEASCSILGGHSVNDEEVKFGYSVTGTVHPARVKANAGARAGDALVFTKRLGTGVIGT 4578 + ++ +I G S E +K GY+ T+ NA +GD + T V+ Sbjct: 230 EYGVSTAAINDGMS---EMIKRGYTAAQTLGAMPAVLNAAKASGDDFNDVMHVSTSVLEQ 286 Query: 4577 -ALKRGIARDEDVAEATASMLTLNRTACEEMLSYDVGGCTDVTGFGLIGHAR----EMAI 4413 LK E+T ML N + + L+Y + T GF +G A A Sbjct: 287 FGLK---------TESTTGMLK-NTSRVTDTLTY-IANAT-AAGFQDMGEAMTYVGPSAH 334 Query: 4412 ASGVTLEIESDALRFLPG-AVEYARAGAVPAG 4320 A+G++LE + A+ + +E + AG G Sbjct: 335 AAGISLEETAAAIGIMSNKGIEGSVAGTALRG 366 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,968,380 Number of Sequences: 14420 Number of extensions: 1490948 Number of successful extensions: 5406 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 3596 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5385 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 7183302213 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig84 (17,118 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818228.1|gp169 70 5e-12 ref|NP_817358.1|gp20 57 8e-08 ref|NP_818340.1|gp39 52 2e-06 ref|NP_817998.1|gp25 51 4e-06 ref|NP_817477.1|gp27 49 2e-05 ref|NP_817913.1|gp62 37 0.051 ref|NP_817395.1|gp57 37 0.088 ref|NP_891650.1|distal long tail fiber assembly catalyst 35 0.25 >ref|NP_818228.1|gp169 Length = 358 Score = 70.5 bits (171), Expect = 5e-12 Identities = 86/357 (24%), Positives = 153/357 (42%), Gaps = 29/357 (8%) Frame = +1 Query: 15184 LDQVINQAIEQGKMPGAVL-LVGHDGKVVFRKAYGKRALVPQPEAMTVDTVFDCASLTKV 15360 +D V+++ + K PG +L + G G + G R + P + M+ D F AS+TK Sbjct: 12 VDNVVSEEMAVTKQPGMMLKITGPAGD--YELTRGLRTVAPD-KPMSFDAKFRAASVTKT 68 Query: 15361 IATTASLMKLFDEGKFRLSDKVTDYIPEFQGGKSEITLRELLTHFSGLQPDVPLKEPWAG 15540 + T ++++ D+GK L D V Y+ + G+ ++T++++L SGL A Sbjct: 69 L-TAMAILREVDKGKISLDDVVDKYVAQIPNGR-QLTVKQVLMMRSGL----------AE 116 Query: 15541 YQTGIKLATTF---------------------KPADPPGVRYVYSDINFILLGEIVHRLS 15657 YQT I +A TF K PG +Y+Y N+ LL I+ +++ Sbjct: 117 YQTDIIIALTFLAFPTWPTFSPEGAMQAVRRNKAVFKPGAQYMYCGSNYHLLALILEKVN 176 Query: 15658 -GQMLNEYARENIFLPIGMKESMFQPPASLVPRIAPTERWPVRIGPPLRGVVHDPTARNM 15834 G+ +++ P+GM + F P + +P+ E G + + N Sbjct: 177 GGKGWKRILMDDLVKPLGMTSTSF-PDGATIPQ---PEVKGYTTGVFKKWSENGKVNANF 232 Query: 15835 GGVAGHAGLFSTADDLARFAQMMLNGGELDGVRLFSPLTVDKFIEPQTPPDQ-AVLRGLG 16011 G AG G+ +T D+ ++A M +G F++P+T Q ++ + Sbjct: 233 HGPAG--GMVTTMGDMHKWATAMRDG---------------VFLKPETRQLQHSLFSSVP 275 Query: 16012 WDVDSPHSGNRG-ELFPIGS-YGHTGFT---GTSMWIDPSTKTYVILLANSVHPDLR 16167 W + P + G L G +GH G+ GT +P + + N P+L+ Sbjct: 276 WTDEGPTAFGYGMGLLSFGKWFGHDGWIPGYGTVAMYEPVSGAVFTGVENMKTPNLK 332 >ref|NP_817358.1|gp20 Length = 628 Score = 56.6 bits (135), Expect = 8e-08 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 14/204 (6%) Frame = +1 Query: 15181 ALDQVINQAIEQGKMPGAVL-LVGHDGKVVFRKAYGKRALVPQPEAMTVDTVFDCASLTK 15357 A+D ++ Q+ + PG +L + G G + KAYG + +T+D F S TK Sbjct: 82 AVDLIVEQSRAETGQPGVMLQITGPRGN--YAKAYGT-TVGGTVRPLTLDDHFRMGSSTK 138 Query: 15358 VIATTASLMKLFDEGKFRLSDKVTDYIPEFQGGKSEITLRELLTHFSGLQPD-------- 15513 + T + + D+G L D + Y+P G + IT+ +L+ SG+ Sbjct: 139 MF-TAIAFFQAVDKGLITLDDTLEQYVPGIPNGTA-ITMGHMLSMRSGIAEYTAGINALW 196 Query: 15514 VPLKEPWAGYQTGIK--LATTFKPAD-PPGVRYVYSDINFILLGEIVHRL--SGQMLNEY 15678 + L W TG K L+T P++ PG Y+Y++ NF L+G ++ + + + + + Sbjct: 197 ITLFPTWPW--TGAKDFLSTMKGPSNFYPGTDYLYTNSNFALIGMVLEIVDPAHRPIKQI 254 Query: 15679 ARENIFLPIGMKESMFQPPASLVP 15750 +E+I P+G+ E+ + PP VP Sbjct: 255 FKEDIIDPLGLTETSW-PPIGPVP 277 >ref|NP_818340.1|gp39 Length = 628 Score = 52.4 bits (124), Expect = 2e-06 Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 22/211 (10%) Frame = +1 Query: 15184 LDQVINQAIEQGKMPGAVL-LVGHDGKVVFRKAYGKRALVPQPEAMTVDTVFDCASLTKV 15360 +D ++ ++ + PG +L + G G + KAYG + +T+D F S TK+ Sbjct: 83 VDLIVEESRAETGQPGVMLQITGPRGN--YAKAYGT-TVGGTVRPLTLDDHFRMGSSTKM 139 Query: 15361 IATTASLMKLFDEGKFRLSDKVTDYIPEFQGGKSEITLRELLTHFSGLQPDVPLKEPWAG 15540 T + + D+G L D + Y+P G + IT+ +L+ SG+ A Sbjct: 140 F-TAIAFFQAVDKGLITLDDTLEQYVPGIPNGTA-ITMGHMLSMRSGI----------AE 187 Query: 15541 YQTGIK-LATTFKPADP------------------PGVRYVYSDINFILLGEIVHRL--S 15657 Y GI L T P P PG Y+Y++ NF L+G ++ + + Sbjct: 188 YTAGINALWITLFPTWPWTGAKDFLGSMKGPSNFYPGTDYLYTNSNFALIGMVLEIVDPA 247 Query: 15658 GQMLNEYARENIFLPIGMKESMFQPPASLVP 15750 + + + +E+I P+G+ E+ + PP VP Sbjct: 248 HRPIKQIFKEDIIDPLGLTETSW-PPIGPVP 277 >ref|NP_817998.1|gp25 Length = 941 Score = 50.8 bits (120), Expect = 4e-06 Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 17/204 (8%) Frame = +1 Query: 15184 LDQVINQAIEQGKMPGAVLLV-GHDGKVVFRKAYG-KRALVPQPEAMTVDTVFDCASLTK 15357 +DQ++ Q + G PG L + G+ + + YG A VP +T D F S TK Sbjct: 80 IDQIVAQGMADGAGPGVGLYITSPHGQ--YLQTYGISTAGVP----LTPDMHFRIGSATK 133 Query: 15358 VIATTASLMKLFDEGKFRLSDKVTDY-IPEFQ----GGKSEITLRELLTHFSGL---QPD 15513 TA LM + D G L D + + PEF+ +I +R L+ SG+ Q D Sbjct: 134 PFTATAVLMAIQD-GLLSLEDTIDQFDTPEFKLSDIDQADKIKIRHLMMMRSGVFNEQRD 192 Query: 15514 VPLKEPWA-------GYQTGIKLATTFKPADPPGVRYVYSDINFILLGEIVHRLSGQMLN 15672 + +A ++ T+ K PG + Y + N+ ++ ++ + G+ + Sbjct: 193 LSFMLNFALMPKSELSDSAWFRILTSHKSVREPGTGFEYVNANWFIISLVLRAVRGRHIR 252 Query: 15673 EYARENIFLPIGMKESMFQPPASL 15744 + E+I P+G+ E+ + A + Sbjct: 253 DIITEDIITPLGLTETSWPATAKM 276 >ref|NP_817477.1|gp27 Length = 946 Score = 48.9 bits (115), Expect = 2e-05 Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 16/203 (7%) Frame = +1 Query: 15184 LDQVINQAIEQGKMPGAVLLVGHDGKVVFRKAYGKRAL-VPQPEAMTVDTVFDCASLTKV 15360 +D+++ + + G PG L V + + K YG VP +T D F S TK Sbjct: 80 IDEIVAEGMATGAGPGVGLYVTSP-QGYYLKTYGISTTGVP----LTPDMHFRIGSATKP 134 Query: 15361 IATTASLMKLFDEGKFRLSDKVTDY-IPEFQ----GGKSEITLRELLTHFSGL---QPDV 15516 TA LM + D G L D + + PEF+ +EI +R L+ SG+ Q D+ Sbjct: 135 FTATAVLMAIQD-GLISLEDTIDQFDTPEFKLSDIDRANEIKIRHLMMMRSGVFNEQRDL 193 Query: 15517 PLKE-----PWAGY--QTGIKLATTFKPADPPGVRYVYSDINFILLGEIVHRLSGQMLNE 15675 P +G+ Q+ + + K PG + Y + N+ L+ I+ + G+ + + Sbjct: 194 TFMLNFALFPKSGFSDQSWFNVLKSHKLVRDPGTEFEYVNGNWFLISLILKAVRGKHIRQ 253 Query: 15676 YARENIFLPIGMKESMFQPPASL 15744 ++I P+G+ E+ + A++ Sbjct: 254 ILYDDIINPLGLTETSWPATAAM 276 >ref|NP_817913.1|gp62 Length = 496 Score = 37.4 bits (85), Expect = 0.051 Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 36/280 (12%) Frame = +1 Query: 15181 ALDQVINQAIEQG-KMPGAVL-LVGHDGKVVFRKAYGKRALVPQPEAMTVDTVFDCASLT 15354 A+D ++ ++ K GA++ +V +G + KAYG Q + T + S++ Sbjct: 85 AIDALVASKLKPNTKTDGALVGIVTPNGS--YYKAYGGDRTSGQTLTLAHRTRY--GSIS 140 Query: 15355 KVIATTASLMKLFDEGKFRLSDKVTDYIPEFQGGKSEITLRELLTHFSGLQP----DVPL 15522 K+ T L ++ D G D + ++ G +IT+R LL SG++ D + Sbjct: 141 KMYCNTLVLAQI-DAGHISFDDTLDQFVSGVANG-DKITIRHLLMMQSGIKDYLGEDAAV 198 Query: 15523 KEPWAGYQTG----IKLATTFKPADPPGVRYVYSDINFILLGEIVHRL-----SGQMLNE 15675 ++ + T + +++P PG YS+ N ILLG+I+ +G+ + + Sbjct: 199 QQSYFLNPTSTFDPMPYIRSYEPMYEPGESSSYSNSNTILLGKILEWCDAEYGAGRGIRQ 258 Query: 15676 YARENIFLPIGMKESMFQPPASLVPRIAPTER-WPVRIGPP-----------LRGVVHDP 15819 E+ +G+ E+ + L P P R W + P L G+ P Sbjct: 259 IILEDACATLGLDETEWPTGNYLSP---PYMRGWTPNLALPQIQALLGPLAFLAGLFGYP 315 Query: 15820 TARNM---------GGVAGHAGLFSTADDLARFAQMMLNG 15912 TA + G AG G T DL +F + + +G Sbjct: 316 TAAELEWTAVSTTWAGAAGSLG--GTIYDLVKFGEHLRDG 353 >ref|NP_817395.1|gp57 Length = 287 Score = 36.6 bits (83), Expect = 0.088 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Frame = -2 Query: 7610 SGRLPRTRRRPKSTAPWVIFSSSWAASTRRPKATGFWCR*SRSTPWAGST-WPCAWSARE 7434 +G +P S A +S++W+A+ ++ S + AGS W AWSA E Sbjct: 135 AGEVPFAWSAAWSAAGSAAWSAAWSAAGSAARSAAGSAAGSAAWSAAGSAAWSAAWSAAE 194 Query: 7433 SGKTPRKASTAPPRWNPATWTRIWGSASATCG 7338 S S A A W+ W +A + G Sbjct: 195 SAAGSAAWSAAWSAAGSAAWSAAWSAAGSAAG 226 >ref|NP_891650.1|distal long tail fiber assembly catalyst Length = 258 Score = 35.0 bits (79), Expect = 0.25 Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 12/144 (8%) Frame = -1 Query: 14451 AGYAPFNIVN--FGNLLYVTYAQQDAGKHDDVAGAGHGFVDVYTTGGALVGRLISRGALD 14278 AG A N +N G L +T + +AG G G GG GRL+ G Sbjct: 124 AGAAGGNAINNAIGTRLRIT-------NNGAIAGGGGG------GGGGNRGRLVFGGGGG 170 Query: 14277 SPWGMALAPANF--GPLGGDLLI---GNFGDGTINAFNPTSGAFLGTLS---DTNGNPI- 14125 P+G + +N G G + G+ G+G+++A+ +G +G +T GN Sbjct: 171 RPFGAGGSSSNMGSGATAGSISAPGKGSVGEGSLSAYTGGAGGNVGAAGGRCNTQGNGTE 230 Query: 14124 VNQGLWGLAF-GNGSQGTSTGTLY 14056 N G G A GN + GT+Y Sbjct: 231 YNGGAAGKAVTGNAPRWDKVGTIY 254 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,844,864 Number of Sequences: 14420 Number of extensions: 1683720 Number of successful extensions: 6509 Number of sequences better than 0.5: 8 Number of HSP's better than 0.5 without gapping: 3947 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6492 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 8101222876 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig85 (11,833 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_899367.1|dCMP deaminase 66 9e-11 ref|NP_817627.1|gp38 53 8e-07 ref|NP_047965.1|gp20 50 4e-06 ref|NP_891789.1|dCMP deaminase 48 3e-05 ref|NP_046853.1|putative deoxycytidinylate deaminase 47 3e-05 ref|NP_813736.1|gp20 46 1e-04 ref|NP_049828.1|Cd dCMP deaminase 45 2e-04 ref|NP_047971.2|gp26 45 2e-04 ref|YP_053021.1|hypothetical protein 44 4e-04 ref|NP_932553.1|dCMP deaminase 43 9e-04 ref|NP_861914.1|Cd dCMP deaminase 42 0.001 ref|NP_944156.1|Cd dCMP deaminase 38 0.028 ref|YP_024425.1|outer capsid protein 37 0.036 ref|NP_064745.1|gp7 35 0.23 ref|NP_918975.1|putative glycoprotein 35 0.23 >ref|NP_899367.1|dCMP deaminase Length = 150 Score = 65.9 bits (159), Expect = 9e-11 Identities = 41/101 (40%), Positives = 54/101 (53%), Gaps = 5/101 (4%) Frame = -3 Query: 6368 WDQYNLEICRTVAARSKDPNTQIGCVIVGPNHEIRSTGYNSFPRGIRD-----DVPERLV 6204 +D L+I ++ A +S Q+G VIV N I S GYN P G+ D + Sbjct: 9 YDLVYLDIAKSFAKKSTCKQKQVGAVIV-KNDRIISHGYNGTPSGMLHCKDTADFGDLTH 67 Query: 6203 RPTKYLWIEHAERNAICNAARAGTATEGCTIYVDIMPCMDC 6081 R + HAE+NAIC AARAG +TEG T+YV PC +C Sbjct: 68 RQWSEIHEIHAEQNAICYAARAGISTEGATMYVTASPCHNC 108 >ref|NP_817627.1|gp38 Length = 127 Score = 52.8 bits (125), Expect = 8e-07 Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 12/110 (10%) Frame = -3 Query: 6374 PSWDQYNLEICRTVAARSKDPNTQIGCVIVGPNHEIRSTGYNSFPRGIR--DDVPER--- 6210 P+WD+Y LEI +TVA RS +Q+G V+V + +R+TGYN P G P R Sbjct: 3 PTWDEYFLEIAKTVAIRSDCERSQVGAVVV-KDRRVRATGYNGAPAGRPGCSTCPRRTSG 61 Query: 6209 -LVRPTKY------LWIEHAERNAICNAARAGTATEGCTIYVDIMPCMDC 6081 + + Y HAE NA+ R G T+Y+ PC C Sbjct: 62 AIPGVSDYDSGVGRCVAVHAEANALLYCDREDLI--GATLYITRAPCDGC 109 >ref|NP_047965.1|gp20 Length = 117 Score = 50.4 bits (119), Expect = 4e-06 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 13/98 (13%) Frame = -3 Query: 6335 VAARSKDPNTQIGCVIVGPNHEIRSTGYNSFPRGI----------RDDVPERLVRPTK-- 6192 +A R+ +Q+G V+V NHE+R TGYN P G+ R + P Sbjct: 1 MATRADCTRSQVGAVLVNANHEVRGTGYNGAPSGVPGCASAGACPRGQLSAVECAPNSDY 60 Query: 6191 -YLWIEHAERNAICNAARAGTATEGCTIYVDIMPCMDC 6081 +HAERNAI +A A A G T+Y PC C Sbjct: 61 ANCVADHAERNAIRHAPSAELA--GATLYTTREPCPAC 96 >ref|NP_891789.1|dCMP deaminase Length = 168 Score = 47.8 bits (112), Expect = 3e-05 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 20/114 (17%) Frame = -3 Query: 6362 QYNLEICRTVAARSKDPNTQIGCVIVGPNHEIRSTGYNSFPRG-------------IRDD 6222 Q ++I +A SK + ++G +I + I STG+N P G + DD Sbjct: 4 QTYMQIAYLIAKNSKCVSWKVGALIE-KDGRIISTGFNGTPAGQVNCSCHAHKSGWLDDD 62 Query: 6221 ---VPERLVRPTKYLWIE----HAERNAICNAARAGTATEGCTIYVDIMPCMDC 6081 +PE+ RP W + HAE NAI AAR G + EG +++ PC DC Sbjct: 63 GKMIPEK--RPEHSAWSQKNEIHAELNAILFAARNGVSIEGASMWCTASPCPDC 114 >ref|NP_046853.1|putative deoxycytidinylate deaminase Length = 128 Score = 47.4 bits (111), Expect = 3e-05 Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 13/111 (11%) Frame = -3 Query: 6374 PSWDQYNLEICRTVAARSKDPNTQIGCVIVGPNHEIRSTGYNSFPRGIR--DDVPERL-- 6207 P WD+Y L I A RS +++G V+V + +R TGYN P G P RL Sbjct: 4 PDWDEYFLGIATAAAQRSDCERSKVGAVVV-KDRRVRGTGYNGAPAGAAGCSTCPRRLSG 62 Query: 6206 ---------VRPTKYLWIEHAERNAICNAARAGTATEGCTIYVDIMPCMDC 6081 T+ + + HAE NA+ R G T+YV PC C Sbjct: 63 AVPGVSDYSSGATRCVAV-HAEANALLYCDREDLI--GATLYVTREPCYAC 110 >ref|NP_813736.1|gp20 Length = 116 Score = 45.8 bits (107), Expect = 1e-04 Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 13/98 (13%) Frame = -3 Query: 6335 VAARSKDPNTQIGCVIVGPNHEIRSTGYNSFPRGIRDDVPERLVRPTKYLWIE------- 6177 +A R+ +Q+G V+V N+E+R TGYN P G+ + +E Sbjct: 1 MATRADCTRSQVGAVLVNANNEVRGTGYNGAPSGVPGCASAGACPRGRLSAVECAPNSDY 60 Query: 6176 ------HAERNAICNAARAGTATEGCTIYVDIMPCMDC 6081 HAERNAI +A A G T+Y PC C Sbjct: 61 ANCTADHAERNAIRHAPAA--ELPGSTLYTTREPCPAC 96 >ref|NP_049828.1|Cd dCMP deaminase Length = 193 Score = 45.1 bits (105), Expect = 2e-04 Identities = 43/130 (33%), Positives = 53/130 (40%), Gaps = 39/130 (30%) Frame = -3 Query: 6353 LEICRTVAARSKDPNTQIGCVIVGPNHEIRSTGYNSFPRG-------------------- 6234 L+I V+ SK + ++G VI N I STGYN P G Sbjct: 7 LQIAYLVSQESKCCSWKVGAVIE-KNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKH 65 Query: 6233 --IRDDVPE--------RLV-----RPTKYLWIE----HAERNAICNAARAGTATEGCTI 6111 I+ PE R V R W HAE NAI AAR G++ EG T+ Sbjct: 66 AIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAARNGSSIEGATM 125 Query: 6110 YVDIMPCMDC 6081 YV + PC DC Sbjct: 126 YVTLSPCPDC 135 >ref|NP_047971.2|gp26 Length = 174 Score = 44.7 bits (104), Expect = 2e-04 Identities = 39/138 (28%), Positives = 55/138 (39%) Frame = -2 Query: 8964 PIPSRMMEPIMLLTLGGGGPLFHQVFRAAREAILSGRVRAGERLPVTRALARELGVSRNV 8785 P P+++ LTLG GP + I +GR G++LP RA+ +LG+ R Sbjct: 2 PAPAQIFTQRDRLTLGAMGPKTQAAYVIISGWIATGRYGPGDKLPSERAMCEDLGIGRTA 61 Query: 8784 VLIAYEQLIAEGYAEGRVGSGTYVAATVPEAMTRAAARSKAGGAEGPGETRLSRYGSRIL 8605 + +L+AEG E S A VP M + G E T Sbjct: 62 LRQVLAKLVAEGILEVHQRS----AYRVPSGMRISWVIEDHGANEATAPT---------- 107 Query: 8604 ADPESDAPLTTAGRRTRY 8551 +S A TAG R+ Y Sbjct: 108 --IDSAAEALTAGVRSAY 123 >ref|YP_053021.1|hypothetical protein Length = 444 Score = 43.9 bits (102), Expect = 4e-04 Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 13/164 (7%) Frame = +2 Query: 2570 STDGGTTWNP----IGAGLPTYQQGNLGRIGIAIAPSDGNRMFALVEARGEAGGLYRSDD 2737 ST+GG TWN +G G+P++Q G A SDG+ + + + G +S + Sbjct: 160 STNGGATWNSLPQGLGTGVPSFQATPKG------AASDGSTVVVVY----DGGYSAKSTN 209 Query: 2738 AGANWKRVNGEQRIYGRGGDFACVRVDPTNKDVIYVANTSTY--RSTDAGQSFTAFKGAP 2911 G +W + R + G + + + I A S Y RSTD G +++ Sbjct: 210 GGVSWVSL---PRFFFSGTSAVNINCVAVSGNTIVQAGASGYARRSTDGGSTWSNLPRGL 266 Query: 2912 GGDDYHTIWINPANPNIILLAADQ-------GATITVNHGATWS 3022 G TI N+I+ + TI+ N GATW+ Sbjct: 267 GMRTDGTITKMHGRGNVIVAGNSEQQNSDPTTLTISTNGGATWT 310 Score = 39.3 bits (90), Expect = 0.009 Identities = 61/275 (22%), Positives = 101/275 (36%), Gaps = 13/275 (4%) Frame = +2 Query: 2240 STDAGKTWTHLGLRDAQQIPAIIVDPR---NPNRLFVAVLGHPYGTSSERGVFRSTDGGQ 2410 ST+ G TW L +P+ P+ + V V Y +ST+GG Sbjct: 160 STNGGATWNSLPQGLGTGVPSFQATPKGAASDGSTVVVVYDGGYSA-------KSTNGGV 212 Query: 2411 SWQKV-LYKDDRTGAIDLAFDPRNPQNVYAVLWQAQQGPWENGAFSGPNSGLFKSTDGGT 2587 SW + + T A+++ N AV +G + +STDGG+ Sbjct: 213 SWVSLPRFFFSGTSAVNI--------NCVAVSGNTI-------VQAGASGYARRSTDGGS 257 Query: 2588 TWNPIGAGLPTYQQGNL----GRIGIAIAPSDGNRMFALVEARGEAGGLYRSDDAGANWK 2755 TW+ + GL G + GR + +A GN + + L S + GA W Sbjct: 258 TWSNLPRGLGMRTDGTITKMHGRGNVIVA---GNS----EQQNSDPTTLTISTNGGATWT 310 Query: 2756 RVN-GEQRIYGRGGDFACVRVDPTNKDVIYVANTSTYRSTDAGQSFT----AFKGAPGGD 2920 N G G C VD + ++Y T S + G ++T G Sbjct: 311 GKNIGSPDGLGSRMATMCHVVD--SSVIVYGMQLHTAISRNGGSTWTWLPSGLNSGSGSS 368 Query: 2921 DYHTIWINPANPNIILLAADQGATITVNHGATWSS 3025 + + ++ I+ + A ++ N G +WS+ Sbjct: 369 NTTMLCMDSVGDTIVAGTYNGSAAVSYNKGLSWSA 403 >ref|NP_932553.1|dCMP deaminase Length = 172 Score = 42.7 bits (99), Expect = 9e-04 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 20/105 (19%) Frame = -3 Query: 6335 VAARSKDPNTQIGCVIVGPNHEIRSTGYNSFPRGIRDDVPER----------------LV 6204 VA S + ++G +I + I STGYN P G ++ + + Sbjct: 13 VAQESHCVSWKVGAIIT-KDGRIISTGYNGTPAGGHENCDDHAKAAGWLDPETGKLKAMY 71 Query: 6203 RPTKYLWIE----HAERNAICNAARAGTATEGCTIYVDIMPCMDC 6081 R W HAE NAI AA++G + +G +YV + PC +C Sbjct: 72 RQAHNEWSSCNEIHAELNAILYAAKSGQSIDGAEMYVTVSPCREC 116 >ref|NP_861914.1|Cd dCMP deaminase Length = 169 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/32 (56%), Positives = 21/32 (65%) Frame = -3 Query: 6176 HAERNAICNAARAGTATEGCTIYVDIMPCMDC 6081 HAE NAI AAR G + EG T+Y + PC DC Sbjct: 104 HAELNAILFAARKGNSIEGATLYTTLSPCPDC 135 >ref|NP_944156.1|Cd dCMP deaminase Length = 182 Score = 37.7 bits (86), Expect = 0.028 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = -3 Query: 6176 HAERNAICNAARAGTATEGCTIYVDIMPCMDC 6081 HAE NAI AA G + EG T+Y + PC +C Sbjct: 91 HAEMNAILFAAHGGKSIEGATMYCTMAPCPEC 122 >ref|YP_024425.1|outer capsid protein Length = 460 Score = 37.4 bits (85), Expect = 0.036 Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 6/159 (3%) Frame = +2 Query: 2567 KSTDGGTTWNPIGAGLPTYQ-QGNLGRIGIAIAPSDGNRMFALVEARGEAGGLYRSDDAG 2743 +STD G TW+ IG G T Q G + I + GN + A G RS + G Sbjct: 168 RSTDKGLTWSYIGNGFGTGQTSGTISAICVV-----GNVVVVGGIAGSNIGVAGRSTNGG 222 Query: 2744 ANWKRVNGEQRIYGRGGDFACVRVDPTNKDVIYVANTSTYRSTDAGQSFTAFKG--APGG 2917 +W ++ + NK + + + S D G +++A GG Sbjct: 223 VSWTKLPDFLNSGATASAINKILHVGGNKLIALLGSGYAAVSNDLGATWSALPRWLNSGG 282 Query: 2918 DDYHTIWIN---PANPNIILLAADQGATITVNHGATWSS 3025 D +T + + A II + + A+I+ N G TWS+ Sbjct: 283 SDNNTSFFDGAVTATGAIIAVGQNGFASISRNGGVTWSA 321 >ref|NP_064745.1|gp7 Length = 540 Score = 34.7 bits (78), Expect = 0.23 Identities = 23/51 (45%), Positives = 31/51 (60%) Frame = +1 Query: 11668 SGRSATKRANSATPSGASWTATSKPSATAAISSPEGNSAIASFTSNGASGS 11820 +G SAT A SAT +GAS TA S SATA+ +S ++ AS + AS + Sbjct: 108 AGLSATAAATSATNAGASETAAS-ASATASATSATNSATSASQAATSASAA 157 >ref|NP_918975.1|putative glycoprotein Length = 1270 Score = 34.7 bits (78), Expect = 0.23 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 7/51 (13%) Frame = +2 Query: 2477 NPQNVYAVLWQAQQGPWENGAFSG-------PNSGLFKSTDGGTTWNPIGA 2608 NPQ+ V W A G W N SG PN+ + T G TWN +GA Sbjct: 183 NPQDQQVVSWDAASGKWINKTISGGGGIPDAPNNA-NQYTRGQATWNVLGA 232 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,382,547 Number of Sequences: 14420 Number of extensions: 1051912 Number of successful extensions: 3892 Number of sequences better than 0.5: 15 Number of HSP's better than 0.5 without gapping: 2774 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3875 length of database: 3,019,461 effective HSP length: 107 effective length of database: 1,476,521 effective search space used: 5663934556 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig86 (17,859 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,745,616 Number of Sequences: 14420 Number of extensions: 1787169 Number of successful extensions: 5997 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 3877 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5995 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 8458800083 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig87 (14,688 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_024425.1|outer capsid protein 35 0.22 ref|NP_049742.1|e.6 conserved hypothetical protein 34 0.38 >ref|YP_024425.1|outer capsid protein Length = 460 Score = 35.0 bits (79), Expect = 0.22 Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 4/109 (3%) Frame = +3 Query: 8643 RSIDAGKTWSTVRGGFPAGEL-GRIGINSAPGNPSIIYAQVEGPEGRGGTYRSNDNGVTW 8819 RS D G TWS + GF G+ G I GN ++ G G RS + GV+W Sbjct: 168 RSTDKGLTWSYIGNGFGTGQTSGTISAICVVGNVVVVGGIAGSNIGVAG--RSTNGGVSW 225 Query: 8820 EKRGGYDQQGQYYSKIQ--IDPANSDRVYIMNMN-IMVSDDGGRTVTAL 8957 K + G S I + + + ++ VS+D G T +AL Sbjct: 226 TKLPDFLNSGATASAINKILHVGGNKLIALLGSGYAAVSNDLGATWSAL 274 >ref|NP_049742.1|e.6 conserved hypothetical protein Length = 197 Score = 34.3 bits (77), Expect = 0.38 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 1/140 (0%) Frame = -3 Query: 859 ETYRARVAKLQEAMKEFGLHAIVLESGPAMMYLTGVRWGRSERTFSAVLTQKGDPAWVLP 680 E Y A AKL + +K+ + V+ E+ ++ +K A Sbjct: 27 EQYTAAAAKLLDKIKD--------------LKTASVKSINEEKRIRELIVEKNKQA---- 68 Query: 679 GFEEMRARELIQPGQDIRVWQEDESPYQRIAEIIKDRGIAAGRVGMEESVRFFVFDGVRK 500 +E R+L+ GQD+ + + Y+R AE + + + +E + + D R+ Sbjct: 69 ESKEREIRKLLSEGQDVTMHAKLGLLYRRTAEQLTTKADGYAEMRIEIAKKVVELDDARQ 128 Query: 499 QTA-KLEYVSAQPALKAAGV 443 + A KLEY+ A A G+ Sbjct: 129 ELAVKLEYIRETRAANALGI 148 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,615,578 Number of Sequences: 14420 Number of extensions: 1464823 Number of successful extensions: 5415 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 3680 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5409 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 6999077487 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig88 (19,586 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817650.1|gp61 39 0.015 ref|NP_046877.1|putative non-heme haloperoxidase 36 0.17 ref|NP_958232.1|gene 58 protein 35 0.22 ref|NP_958267.1|hypothetical protein 35 0.22 ref|NP_040641.1|Nin protein 35 0.29 ref|NP_777319.1|replication protein 35 0.29 >ref|NP_817650.1|gp61 Length = 274 Score = 39.3 bits (90), Expect = 0.015 Identities = 21/49 (42%), Positives = 33/49 (67%) Frame = -3 Query: 2343 TIGDMVRLQRMLIDSLGINRLLTVSGGSMGGMQALEWAVQYPERLVSAI 2197 T+ +M R+ +D+LGI++ + V G SMGG E A +YPER+++AI Sbjct: 73 TVEEMTRVTLRALDALGIDQAVFV-GHSMGGGMVAEIAPRYPERVLAAI 120 >ref|NP_046877.1|putative non-heme haloperoxidase Length = 278 Score = 35.8 bits (81), Expect = 0.17 Identities = 18/49 (36%), Positives = 30/49 (61%) Frame = -3 Query: 2343 TIGDMVRLQRMLIDSLGINRLLTVSGGSMGGMQALEWAVQYPERLVSAI 2197 T+ DM R+ +D L I+R + +G SMGG +E A ++P R+ +A+ Sbjct: 71 TVEDMTRVTLKTLDELDIHRAI-FAGHSMGGGMVVEIAARHPHRVAAAV 118 >ref|NP_958232.1|gene 58 protein Length = 223 Score = 35.4 bits (80), Expect = 0.22 Identities = 25/91 (27%), Positives = 43/91 (47%) Frame = -1 Query: 12782 SEWKNVPRVVAVGDVHGDYNGFVEVLRSAGVIDQKDHWAGGKTHLVQTGDVPDRGPDTRK 12603 S+++N+ VGD+HG Y ++ L + G +KD L+ GD+ DRG + + Sbjct: 10 SKYRNI---WVVGDLHGCYTNLMKKLETIGFDTKKD-------LLISVGDLVDRGTENVE 59 Query: 12602 AMDLLMQLEKEADKAGGHVHALVGNHEAMNV 12510 ++L+ A+ GNHE M + Sbjct: 60 CLELI---------TFPWFRAVRGNHEQMMI 81 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 35.4 bits (80), Expect = 0.22 Identities = 52/218 (23%), Positives = 70/218 (32%), Gaps = 11/218 (5%) Frame = +2 Query: 7934 PGQRHGEKRQHHPPTQPVPHMPSHQQRRGKHERHESLRQNREAEHRRRPRQVPRVALRDP 8113 P R + T+P PH+ + R H + + + PR+ P VA P Sbjct: 21 PRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRAPSRPAAGPRRHPPVARTRP 80 Query: 8114 RHRQQHCRRIACRQRDIRNSVLAVPDPESAGPQNQRRHPGHAASELPAQNEPVEDEEPDR 8293 R R C PDP GP PG A PA E P Sbjct: 81 RTRAPEC----------------APDP---GPAVHPAAPG-CAPAAPAAPEYAPALRPRA 120 Query: 8294 KQCPXXXXXXXXXXXXPETRAA---------HPVQQRRLLKPRLSPQSRR--DPVAAVRH 8440 +C TRA PV+ RR + R P RR P V Sbjct: 121 PECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPRRRVQPRLGV-G 179 Query: 8441 LPRDRGIPRFVRPEQTGRAQVEKVNQVRQRQNHPKNTR 8554 + R RG R R + + +R+ HP++ R Sbjct: 180 VHRRRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPR 217 Score = 35.4 bits (80), Expect = 0.22 Identities = 32/106 (30%), Positives = 47/106 (44%) Frame = +2 Query: 7937 GQRHGEKRQHHPPTQPVPHMPSHQQRRGKHERHESLRQNREAEHRRRPRQVPRVALRDPR 8116 G H R T+ VP P + R +R + R+ R + RRR + PR+ + Sbjct: 126 GAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRT-RRRRRPDPRRRVQ--PRLGVGV-- 180 Query: 8117 HRQQHCRRIACRQRDIRNSVLAVPDPESAGPQNQRRHPGHAASELP 8254 HR++ RR+ R R V A P P +A +R HP H + P Sbjct: 181 HRRRGARRVGRRVR-----VRARPGPGAARRPRRRPHPEHPRAVRP 221 >ref|NP_040641.1|Nin protein Length = 221 Score = 35.0 bits (79), Expect = 0.29 Identities = 25/91 (27%), Positives = 43/91 (47%) Frame = -1 Query: 12782 SEWKNVPRVVAVGDVHGDYNGFVEVLRSAGVIDQKDHWAGGKTHLVQTGDVPDRGPDTRK 12603 S+++N+ VGD+HG Y + L + G ++KD L+ GD+ DRG + + Sbjct: 10 SKYRNI---WVVGDLHGCYTNLMNKLDTIGFDNKKD-------LLISVGDLVDRGAENVE 59 Query: 12602 AMDLLMQLEKEADKAGGHVHALVGNHEAMNV 12510 ++L+ A+ GNHE M + Sbjct: 60 CLELI---------TFPWFRAVRGNHEQMMI 81 >ref|NP_777319.1|replication protein Length = 202 Score = 35.0 bits (79), Expect = 0.29 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = +1 Query: 4636 WSQGWRNPPPNWLHGASSPLRRARCVRRPSGVPGPPLRRTGSP 4764 W + WR+P W G+++P +G PG P R G P Sbjct: 154 WPRPWRSPSARWSGGSTTPAMSGTAATPATGSPGRPGRLQGRP 196 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,167,360 Number of Sequences: 14420 Number of extensions: 1951030 Number of successful extensions: 6960 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 4230 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6944 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 9198669098 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig89 (14,529 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542287.1|unknown 38 0.034 ref|NP_536819.1|hypothetical protein 35 0.17 ref|NP_043483.1|hypothetical protein 35 0.17 ref|NP_075514.1|hypothetical protein 34 0.49 ref|NP_803347.1|holin-like protein 34 0.49 >ref|NP_542287.1|unknown Length = 224 Score = 37.7 bits (86), Expect = 0.034 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 2/98 (2%) Frame = +2 Query: 6437 TTVLRPSWWR--RK*WLPLMRTT*KPAFVRAAMSSEPVTRGVRLMPRWSPAGSRRTPIPA 6610 T+ +RP+W R R+ P R+ P F R S+ P +R RL + S A R P Sbjct: 29 TSRMRPTWTRPERRCASPT-RSAASPTFRRWTRSAWPTSRSRRLRSKISSA---RGPAQR 84 Query: 6611 PARLRLPGTVRWLRGCAR*LRQASVPESGMQGSGELRL 6724 ++ RLP W + AR R S+P + + + R+ Sbjct: 85 SSKRRLPSIAAWSKHSARSQRARSLPSKSLATAPQHRI 122 >ref|NP_536819.1|hypothetical protein Length = 133 Score = 35.4 bits (80), Expect = 0.17 Identities = 19/55 (34%), Positives = 31/55 (56%) Frame = -2 Query: 6764 FDVVIERDSEGYYVASVPQIPACHSQARSLDEVTERIREAIALCLEVGGAPEQEL 6600 + + IE+ ++GY V SVP +P C S +L E +EAI+ +E ++EL Sbjct: 3 YPICIEKVNDGY-VVSVPDVPGCFSAGDTLSEAMLNAKEAISFHIEGMLEDDEEL 56 >ref|NP_043483.1|hypothetical protein Length = 133 Score = 35.4 bits (80), Expect = 0.17 Identities = 19/55 (34%), Positives = 31/55 (56%) Frame = -2 Query: 6764 FDVVIERDSEGYYVASVPQIPACHSQARSLDEVTERIREAIALCLEVGGAPEQEL 6600 + + IE+ ++GY V SVP +P C S +L E +EAI+ +E ++EL Sbjct: 3 YPICIEKVNDGY-VVSVPDVPGCFSAGDTLSEAMLNAKEAISFHIEGMLEDDEEL 56 >ref|NP_075514.1|hypothetical protein Length = 191 Score = 33.9 bits (76), Expect = 0.49 Identities = 18/77 (23%), Positives = 34/77 (44%) Frame = +1 Query: 1504 VNFGNSTTNTLDSGFGYSNAALGVFTEYLQASKFIEGDMVYNQVEAFVQDNWKVTNRLTL 1683 VN N T+N D +L V+ Y ++ + + + +++ NW N + L Sbjct: 104 VNTANVTSNLKDGSSTEIEVSLNVYKGYSESVNWTDSEFLFDS-------NWMFENGIPL 156 Query: 1684 DYGMRFVHQGPQYDINN 1734 D+ ++ H Q+ I N Sbjct: 157 DFTPKYTHTSNQFTIWN 173 >ref|NP_803347.1|holin-like protein Length = 274 Score = 33.9 bits (76), Expect = 0.49 Identities = 18/77 (23%), Positives = 34/77 (44%) Frame = +1 Query: 1504 VNFGNSTTNTLDSGFGYSNAALGVFTEYLQASKFIEGDMVYNQVEAFVQDNWKVTNRLTL 1683 VN N T+N D +L V+ Y ++ + + + +++ NW N + L Sbjct: 104 VNTANVTSNLKDGSSTEIEVSLNVYKGYSESVNWTDSEFLFDS-------NWMFENGIPL 156 Query: 1684 DYGMRFVHQGPQYDINN 1734 D+ ++ H Q+ I N Sbjct: 157 DFTPKYTHTSNQFTIWN 173 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,887,906 Number of Sequences: 14420 Number of extensions: 1736879 Number of successful extensions: 5754 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 3819 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5750 length of database: 3,019,461 effective HSP length: 108 effective length of database: 1,462,101 effective search space used: 6921586134 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig90 (17,455 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_612994.1|hypothetical protein 85 3e-16 ref|NP_049482.1|serine 85 3e-16 ref|NP_818297.1|gp247 44 6e-04 ref|NP_046951.1|gp55 34 0.44 >ref|NP_612994.1|hypothetical protein Length = 348 Score = 84.7 bits (208), Expect = 3e-16 Identities = 58/245 (23%), Positives = 113/245 (46%), Gaps = 6/245 (2%) Frame = -3 Query: 5507 EVYRATDLTLGQSVALKFLPEEASRNQRLLERFHGEVRVARLVSHPNVCRVYDIGEVEGM 5328 +VY A D L + +K + ++ + N + + E R+ +HPN+ +V + E Sbjct: 26 KVYLAHDRHLAHDLVIKEIEKKENTNH---DDYFNEARLLYKHAHPNIVQVQYAAQCESN 82 Query: 5327 PFISMEYVDGEDLSSLLLRIGRLPGDKAVETARKLCAGLAAAHDRGVIHRDLKPQNIMMN 5148 +I+M + L+ L+ + L + + + + +GL H +G++H D+KP NIM++ Sbjct: 83 IYIAMPFYHNGSLNQLMKK-NNLTSREIIRYSIQFLSGLYHIHSKGLMHFDIKPNNIMIS 141 Query: 5147 RRGEVVIMDFGLAAIADQLSGAEVRNGTPAYMSPE--QLKGDGVTAKSDLYALGLVLYEL 4974 R E ++ DFGL+ + ++ S A G ++ PE L + D+Y GL +Y + Sbjct: 142 NRNEAMLSDFGLSQLVNEESRAAPEFGYHFHVPPEYFSLSTNDYNFTYDIYQAGLTIYRM 201 Query: 4973 FTGKRPFDAKNVQQLIDMQESAHLTSMTSVAADIDPAAEK----VIRRCLDPDPAKRPAT 4806 G F+ + Q + + + P K ++ +C+ DP +R + Sbjct: 202 CVGHDNFERERSAFSTIEQLRESIINGCYPLKEYPPHIHKKLITIVNKCIHVDPNERYQS 261 Query: 4805 ALSVM 4791 L V+ Sbjct: 262 VLDVL 266 >ref|NP_049482.1|serine Length = 348 Score = 84.7 bits (208), Expect = 3e-16 Identities = 58/245 (23%), Positives = 113/245 (46%), Gaps = 6/245 (2%) Frame = -3 Query: 5507 EVYRATDLTLGQSVALKFLPEEASRNQRLLERFHGEVRVARLVSHPNVCRVYDIGEVEGM 5328 +VY A D L + +K + ++ + N + + E R+ +HPN+ +V + E Sbjct: 26 KVYLAHDRHLAHDLVIKEIEKKENTNH---DDYFNEARLLYKHAHPNIVQVQYAAQCESN 82 Query: 5327 PFISMEYVDGEDLSSLLLRIGRLPGDKAVETARKLCAGLAAAHDRGVIHRDLKPQNIMMN 5148 +I+M + L+ L+ + L + + + + +GL H +G++H D+KP NIM++ Sbjct: 83 IYIAMPFYHNGSLNQLMKK-NNLTSREIIRYSIQFLSGLYHIHSKGLMHFDIKPNNIMIS 141 Query: 5147 RRGEVVIMDFGLAAIADQLSGAEVRNGTPAYMSPE--QLKGDGVTAKSDLYALGLVLYEL 4974 R E ++ DFGL+ + ++ S A G ++ PE L + D+Y GL +Y + Sbjct: 142 NRNEAMLSDFGLSQLVNEESRAAPEFGYHFHVPPEYFSLSTNDYNFTYDIYQAGLTIYRM 201 Query: 4973 FTGKRPFDAKNVQQLIDMQESAHLTSMTSVAADIDPAAEK----VIRRCLDPDPAKRPAT 4806 G F+ + Q + + + P K ++ +C+ DP +R + Sbjct: 202 CVGHDNFERERSAFSTIEQLRESIINGCYPLKEYPPHIHKKLITIVNKCIHVDPNERYQS 261 Query: 4805 ALSVM 4791 L V+ Sbjct: 262 VLDVL 266 >ref|NP_818297.1|gp247 Length = 376 Score = 43.9 bits (102), Expect = 6e-04 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Frame = -3 Query: 5246 AVETARKLCAGLAAAHDRGVIHRDLKPQNIMMNRRGE-VVIMDFGLAAIADQLSGAEVRN 5070 AV R+L L AHDRG++H + P NI++ + VV++D+ + + D S ++ Sbjct: 204 AVWIFRRLLMALGYAHDRGLVHGAITPDNILIEPQDHAVVLIDWCYSVVIDSESKTHIKA 263 Query: 5069 GTPAYMS--PEQLKGDG-VTAKSDLY-ALGLVLYELFTGKRP 4956 P Y P ++ G T +DLY A L+ + + T RP Sbjct: 264 VVPMYRDFYPAEVLAKGPATPATDLYMAAFLIRWLMGTRIRP 305 >ref|NP_046951.1|gp55 Length = 181 Score = 34.3 bits (77), Expect = 0.44 Identities = 19/74 (25%), Positives = 39/74 (52%) Frame = +3 Query: 11976 ETWWARLLAVACFLAAFIRFVRWRVSAAEKKQAELEAIVAARTMNLSKANRSLDEKAGQL 12155 + WW L + +AFI W A EK+ A+ ++ +++ +N A R +++ G++ Sbjct: 11 KAWWKPLFVLIFAASAFIAGNVWSNRAWEKRWADRDSAESSQKVNAQTAARMIEQ--GRI 68 Query: 12156 RRSEDRLKNAERLA 12197 ++ +KNA+ A Sbjct: 69 IARDEAVKNAKEKA 82 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,711,350 Number of Sequences: 14420 Number of extensions: 1817261 Number of successful extensions: 6491 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 3957 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6478 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 8263363148 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig91 (17,252 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_064745.1|gp7 50 6e-06 ref|NP_049793.1|Hoc head outer capsid protein 44 7e-04 ref|NP_861884.1|Hoc head outer capsid protein 43 0.001 ref|NP_918975.1|putative glycoprotein 40 0.008 ref|YP_024980.1|major tail subunit 39 0.023 ref|NP_944360.1|gp51 35 0.34 ref|NP_958267.1|hypothetical protein 35 0.34 ref|YP_195253.1|hypothetical protein 34 0.44 ref|NP_076689.1|Orf55 34 0.44 >ref|NP_064745.1|gp7 Length = 540 Score = 50.4 bits (119), Expect = 6e-06 Identities = 61/299 (20%), Positives = 114/299 (38%), Gaps = 14/299 (4%) Frame = +1 Query: 7723 ITSSTGVPLNYTAALATTNCGNTWLQLNGGTTSISGSTDATLTVSVSPPGLAAGICNGAI 7902 + +TG+ +N T LA + ++ + T V+ AAG+ A Sbjct: 56 LIGATGLLINGTDYLADVEAAKAAALVAQAAAELAENNAETAEVNAEASETAAGLSATAA 115 Query: 7903 SVAATNPATGASAVNSPLSIPVTLYVSASPLLVISPASLPAFNVAAGTQAVPTQNITLNS 8082 + +ATN +A ++ + T +++ + S A V+ G A N ++ Sbjct: 116 ATSATNAGASETAASASATASATSATNSATSASQAATSASAAAVSEGNAATSETNAANSA 175 Query: 8083 TSPEVLNYSAAFQTNNFGSNWLFVSPLSGSTSSNNVLTISVIPGQLSAGSYAGTVTVFAT 8262 TS S + T ++ VS + +TS++N T SA + A + AT Sbjct: 176 TSA-----SGSASTATTQASAASVSATNAATSASNAAT--------SATNAAASQAAAAT 222 Query: 8263 NPSGAAVANSPVTIPXXXXXXXXXXXXSAPALSFEQTAGGPAPPSQTVTIGSNGQPLSYS 8442 + + AA + S VT ++ + + Q S T +N + Sbjct: 223 SETNAAASESTVTTSATNAATSEANAATSASTATTQATNAATSASTASTSATNAATSETN 282 Query: 8443 AVAASNAPVNWLTVSPASGNTSTS----------GQL----TISADGSKLTPGATYTGT 8577 A +++++ + T + AS + + + GQ T+ DG+ L GA Y T Sbjct: 283 AASSASSAASSATSAQASKDAALAALDSFDDRYLGQKVSDPTLDNDGNALVAGALYFNT 341 Score = 34.3 bits (77), Expect = 0.44 Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 3/157 (1%) Frame = +1 Query: 8452 ASNAPVNWLTVSPASGNTSTSGQLTISADGSKLTPG---ATYTGTVTVTSPGTANSPAVI 8622 A A VN A+G ++T+ + + G+ T AT + T S +A+ A Sbjct: 94 AETAEVNAEASETAAGLSATAAATSATNAGASETAASASATASATSATNSATSASQAATS 153 Query: 8623 TVTLKVSQGTLSAPTAQLIFTQVXXXXXXXXQPILVTASPGSLNFTVSTSTRDGNNWLNA 8802 VS+G +A T++ AS S++ T + +T N +A Sbjct: 154 ASAAAVSEG--NAATSETNAANSATSASGSASTATTQASAASVSAT-NAATSASNAATSA 210 Query: 8803 TPAAASTPAGVQVQVNAAGLAPGVYTGTVTIASAASS 8913 T AAAS A + NAA V T A++ ++ Sbjct: 211 TNAAASQAAAATSETNAAASESTVTTSATNAATSEAN 247 >ref|NP_049793.1|Hoc head outer capsid protein Length = 376 Score = 43.5 bits (101), Expect = 7e-04 Identities = 77/318 (24%), Positives = 131/318 (41%), Gaps = 1/318 (0%) Frame = +1 Query: 7354 PSGTLNFTYQPGASAPTVQSVNITATSGTLSYAVTQSPNTQWLSVPNAGTTATPLPVVVN 7533 P+G ++ T Q A+ P+ Q+ GT++YA + +VP G AT V+ Sbjct: 12 PTGVIDETKQFTAT-PSGQT-----GGGTITYAWSVD------NVPQDGAEATFSYVLKG 59 Query: 7534 PSGLAPGTYTATISVVAAAPGSVAQLIGVTLKVSNDPVIAAGLSSLSFPFQIGQAAPTAQ 7713 P+G AT ++ P + +T+K A + A+P A Sbjct: 60 PAGQKTIKVVATNTLSEGGPETAEATTTITVKNKTQTTTLA----------VTPASPAA- 108 Query: 7714 SFKITSSTGVPLNYTAALATTNCG-NTWLQLNGGTTSISGSTDATLTVSVSPPGLAAGIC 7890 G P+ +TAALA+ G + Q + + G T++T + + + G+ C Sbjct: 109 -----GVIGTPVQFTAALASQPDGASATYQWYVDDSQVGGETNSTFSYTPTTSGVKRIKC 163 Query: 7891 NGAISVAATNPATGASAVNSPLSIPVTLYVSASPLLVISPASLPAFNVAAGTQAVPTQNI 8070 V AT+ S ++ +S+ V + +P + ++P P+ NV A T N+ Sbjct: 164 --VAQVTATD-YDALSVTSNEVSLTVN-KKTMNPQVTLTP---PSINVQQDASATFTANV 216 Query: 8071 TLNSTSPEVLNYSAAFQTNNFGSNWLFVSPLSGSTSSNNVLTISVIPGQLSAGSYAGTVT 8250 T +PE + +++ ++ SP+ GST NV T+ S GS VT Sbjct: 217 T---GAPEEAQITYSWKKDS--------SPVEGST---NVYTVDT----SSVGSQTIEVT 258 Query: 8251 VFATNPSGAAVANSPVTI 8304 T A +PVT+ Sbjct: 259 ATVT-----AADYNPVTV 271 >ref|NP_861884.1|Hoc head outer capsid protein Length = 471 Score = 43.1 bits (100), Expect = 0.001 Identities = 91/404 (22%), Positives = 139/404 (34%), Gaps = 13/404 (3%) Frame = +1 Query: 6409 LTFSGQFGGSLVTQTLNVTSTG----GSIPFVLVAPPGVAWLKVNGLGTLSLSAPATVLV 6576 LT +G GGS QT T G G+I +V W V+ + S +A + Sbjct: 10 LTPTGVIGGS---QTFTATPAGETPDGTITYV--------WT-VDDIAQESTAATMDYTL 57 Query: 6577 TADPAGLAAGTYTAQISIIGGAASLAPIAVTFTV------SAIGVSPASLAFSYTANTLN 6738 A PAG A ++ G +A + T TV S + V+PAS A Sbjct: 58 -ASPAGTKKIKVVATNTLSAGDPEIAEASTTITVNKKENNSTVAVTPASPAAVEIGTATT 116 Query: 6739 FPAPQSVTLSGAATACTTQVTNTS-GGNWFTLLQSACNSPG--SLTFLIDSRVLSGLAPG 6909 F A S SGAA A T +V + G + + S G S+T + + Sbjct: 117 FTANVSNQPSGAAIAYTWKVDGVAVDGQKQSTFEYTPTSEGTKSITCSVTVTATDYVDKT 176 Query: 6910 TYSGSVSITPSPAGNSXXXXXXXXXXXXXXXXXXXXXXXMAFNYQVGGTNNITGQTLTIN 7089 S +VS+T + NS F + T N++G Sbjct: 177 VESSAVSLTVNKKANS------------STLKITPESPTTVFGVPITLTANVSGAPSGAT 224 Query: 7090 TTATQPLNYSLTSSLDSGNFNWIATPIPSXXXXXXXXXXXXVIAGVLPAGLAPGNYSGKL 7269 T+ ++ S S + + T + S V S + Sbjct: 225 TSFQWSMDDSNILDATSATYKFTPTEVGS--------KTLKCTVSVSATNYVTKEISAEA 276 Query: 7270 SVLTPNATPAQTDIPLKLTVSNSALLNVPSGTLNFTYQPGASAPTVQSVNITATSGTLSY 7449 +V+T NAT I L N+ + + T + T PG NI + + Sbjct: 277 TVVTNNATFNSATISLSPPSVNTTVGGTATLTASVTGAPG-------DTNIVYSWKKDNV 329 Query: 7450 AVTQSPNTQWLSVPNAGTTATPLPVVVNPSGLAPGTYTATISVV 7581 A + S NT + +AGT + V+ T ++T VV Sbjct: 330 AESNSTNTYSIDTSSAGTHTIKVEAVLTKDNYTSKTISSTAEVV 373 >ref|NP_918975.1|putative glycoprotein Length = 1270 Score = 40.0 bits (92), Expect = 0.008 Identities = 63/267 (23%), Positives = 104/267 (38%), Gaps = 19/267 (7%) Frame = +1 Query: 7219 AGVLPAGLAPGNYSGKLSVLTPNATPAQTDIPLKLTVSNSALL-------NVPSGTLNFT 7377 AG++P PG +G L +AT A T +P + S + + +GT F Sbjct: 595 AGLVPD---PGATAGTTKYLREDATWATTPLPPVMGASGGSHAAGLVPDPGIVAGTTRFL 651 Query: 7378 YQPGASAPTVQSVNITATSGTLSYAVTQSPN-----TQWLSVPNAGTTATPLPVVVNPSG 7542 + A T + A+ G+ + + P T++L +A TPLP V+ SG Sbjct: 652 REDATWATTPLPPVMGASGGSHAAGLVPDPGIVAGTTRFLR-EDATWATTPLPPVMGASG 710 Query: 7543 LAPGTYTATISVVAAAPGSVAQLI------GVTLKVSNDPVIAAGLSSLSFPFQIGQAAP 7704 G++ A + PG VA G +A+GLS +S P Sbjct: 711 ---GSHAAGL---VPDPGIVAGTTRFLREDGTWATTPGATALASGLSDVSVP-------- 756 Query: 7705 TAQSFKITSSTGVPLNYTAALATTNCGNTWLQLNGGTTSISGSTDAT-LTVSVSPPGLAA 7881 S+ P + TT+ N NG +++ + T LT + G+ Sbjct: 757 -------VSAVVGPAD------TTSYNNGAYNWNGNLLTVTQNCVVTSLTTHLQTAGMVG 803 Query: 7882 GICNGAISVAATNPATGASAVNSPLSI 7962 A++ A++ TGA +SP++I Sbjct: 804 VQLQAAVAPASSGTLTGAPTFSSPVTI 830 >ref|YP_024980.1|major tail subunit Length = 743 Score = 38.5 bits (88), Expect = 0.023 Identities = 54/201 (26%), Positives = 72/201 (35%), Gaps = 9/201 (4%) Frame = -3 Query: 7455 DGVGERAAGGGDVDALHRGGAGAGLVSEVQCAGRYVQKGAV---GDGQL*RDVGLS-GGR 7288 D +G GGG GG GA LVS + Q + G G +VG + GG Sbjct: 516 DAIGTELTGGG-------GGGGAALVSVLSSNAIGGQTATIVIGGGGAGAPNVGTTFGGN 568 Query: 7287 VGCEHAELAAVVARRQPGGKDAGDDLRLSVSRVG--GASRGNGSGDPVEVSGIQAGGEGI 7114 G A ++ GGK R S G G + GN S + GG G Sbjct: 569 GGNTSVSGAGIIGLSWTGGKGGRSGYRSDGSGNGAFGGAGGNNSANT-------GGGAGG 621 Query: 7113 VQRLGGRGVDREGLAGDVIRAAHLVIEGHGRRADGHRGSRDHRKRERHH---GCRAVARR 6943 V GG GV+ G G L G+G ++G G + + G + Sbjct: 622 VSSNGGNGVNGGGGGGGSNNDLVLRRGGNGGGSNGGIGGQGVGTTDGPSGGGGGNSAVWW 681 Query: 6942 RGSDAHRAGVGAGRQAGEDPG 6880 +DA R G G +G G Sbjct: 682 DNADAGRGGNGVTGNSGNQTG 702 >ref|NP_944360.1|gp51 Length = 521 Score = 34.7 bits (78), Expect = 0.34 Identities = 63/280 (22%), Positives = 108/280 (38%), Gaps = 42/280 (15%) Frame = +1 Query: 7462 SPNTQWLSVPNAGTTATPLPVVV--NPSGLAPGTYTATISVVAAAPGSV--AQLIGVTLK 7629 SPNT ++ AGT TP +V S L GT ++ G+ A IG+T Sbjct: 232 SPNTNGIAYMAAGTALTPSAYLVGFQVSNLYGGTGAKWNYAFSSPDGNSTNAMYIGLTAT 291 Query: 7630 VSNDPVIAAGLSSLSFPFQIGQAAPTAQSFKITSSTGVPLNYTAALATTNCGNTWLQLNG 7809 N+ LSS F A + ++ ++ AL + +T L L Sbjct: 292 SGNN------LSSQPIVFNYTDAGGAKHAPQLLATPNGLQTTAGALIPGSANSTALGLPA 345 Query: 7810 -------GTTSI----SGSTDATLTVS----------------VSPPGLAAGICNGAI-- 7902 GTT++ S S ATLTV+ V+ P + NGA Sbjct: 346 LPWGTIYGTTAVISDTSASNQATLTVAAPNDTQGASIKFQGNGVTTPTKTIRVQNGAFQW 405 Query: 7903 ------SVAATNPATGASAVNSPLSIPVTLYVSASPLLVISPASLPAFNVAAGTQAVPTQ 8064 ++ AT +G+ +VN ++ P A P+ + ASL + G+ A+ Sbjct: 406 VNDAFNNIIATLSDSGSLSVNGNITTPTG--TGALPVYTATGASLNGPHAVQGSNALSAG 463 Query: 8065 NITLNSTSPEVLNYSAAF---QTNNFGSNWLFVSPLSGST 8175 T+ + + ++++ + +N + V+ SG++ Sbjct: 464 AATVTFSGAAAFSSASSYVCTANDTTAANAVRVNQTSGTS 503 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 34.7 bits (78), Expect = 0.34 Identities = 59/209 (28%), Positives = 74/209 (35%), Gaps = 5/209 (2%) Frame = +3 Query: 8925 RGPGLAHGGAARHPFGVTRGPELRIHHRPGDSARADTGGLRQRPGYGLQRSGAVFRARGL 9104 R P G RHP P R D A PG A A L Sbjct: 60 RAPSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVHPAA---PGCAPAAPAAPEYAPAL 116 Query: 9105 ADREPQYQHCAGQHCDIHRAHHAAAWHLQRQHHADVVERGVLRERPGHADRQHDSQTSGQ 9284 R P+ CD AHH + + A + G R R DR+ + Sbjct: 117 RPRAPE--------CD-RGAHHLRTRAPRTRTRAVPLGPGA-RVRTPVEDRRRTRRRRRP 166 Query: 9285 CHRQR-----GQLFHRRCIAGREHRDFRQRRRPGDAGQWRGGQQRVHHLRRQHPRALRWR 9449 R+R G HRR A R R R R RPG G R ++R H +HPRA+R R Sbjct: 167 DPRRRVQPRLGVGVHRRRGARRVGRRVRVRARPG-PGAARRPRRRPH---PEHPRAVRPR 222 Query: 9450 GGAGDLRLRDANQRHGALWNHRPLHHQYR 9536 R +RH + RP H ++R Sbjct: 223 --------RRTGRRHRRRASLRPRHRRHR 243 >ref|YP_195253.1|hypothetical protein Length = 3779 Score = 34.3 bits (77), Expect = 0.44 Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 7/201 (3%) Frame = +1 Query: 7621 TLKVSNDPVIAAGLSSLSFPFQI-GQAAPTAQSFKITS--STGVPLNYTAALATTNCGNT 7791 T+ +N AG + I G Q F IT+ STGVPL T + T N GN Sbjct: 3496 TVDANNGNTAIAGTLTTENTLTINGSTVVGNQFFTITNGGSTGVPLRTTFQIDTAN-GN- 3553 Query: 7792 WLQLNGGTTSISGSTDATLTVSVSPPGLAAGICNGAISVAATNPA--TGASAVNSPLSIP 7965 + +NGG SI G TD T P L +G + + A G S P+ + Sbjct: 3554 -VTMNGGNISIFG-TDGT------TPRLTFNNSSGDFTTYGSFSALGDGTSTFGGPIEVA 3605 Query: 7966 VTLYVSASPLLVISPASLPAFNVAAGTQAVPTQNITLNSTSPEVLNYSAAFQTNNFGSNW 8145 ++ L+V S + F+V+ ++ S ++ S F + G W Sbjct: 3606 GDATINGGDLVVNSDGN-EIFSVS-------------DNGSVKIAGISNYFSSTG-GRKW 3650 Query: 8146 LF--VSPLSGSTSSNNVLTIS 8202 L+ S ++ T++N L +S Sbjct: 3651 LYSAESVVNAETNTNYFLNVS 3671 >ref|NP_076689.1|Orf55 Length = 373 Score = 34.3 bits (77), Expect = 0.44 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 1/162 (0%) Frame = +1 Query: 6397 DKPSLTFSGQFGGSLVTQTLNVTSTGGSIPFVLVAPPGVAWLKVNGLGTLSLSAPATVLV 6576 D + T+S + + TLN+T G + + + W + +G T ++++ T Sbjct: 35 DATAQTWSPSYATTPQVLTLNLTKAGSTTSVIGGISGNITWTRADGTTTTTITS-TTNTD 93 Query: 6577 TADPAGLAAGTYTAQISIIGGAASLAPIAVTFTVSAIGVSPASLAFSYTANT-LNFPAPQ 6753 T +G A T ++++ +A A FT S + V P NT LN P Sbjct: 94 TQYMSGSANSVLTTKVNV-----PIANSASRFTASGLWVDP---------NTGLNVPFSA 139 Query: 6754 SVTLSGAATACTTQVTNTSGGNWFTLLQSACNSPGSLTFLID 6879 + L+ A + + N GN S P SLT D Sbjct: 140 VLDLTVVQLAKSAVLANVYAGNGGAFYNS---MPASLTVNAD 178 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,699,840 Number of Sequences: 14420 Number of extensions: 1719039 Number of successful extensions: 6660 Number of sequences better than 0.5: 9 Number of HSP's better than 0.5 without gapping: 3911 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6618 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 8166368521 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig92 (17,963 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 58 4e-08 ref|NP_818325.1|gp24 35 0.35 >ref|NP_046572.1|ABC transporter Length = 705 Score = 57.8 bits (138), Expect = 4e-08 Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 6/180 (3%) Frame = -3 Query: 4284 VNSLNLEVDKGKICAFLGPNGAGKSTTVKMMTGLLAPTDGDVKVCGLDAAA-NPLELKRR 4108 V +NL +D+ +G +G GKST K ++ L D + + GLD + L +++R Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 4107 IGVLPEDLGLFDDLTVEEHLLLTGDIYGVPREETRTRTSQLLHALSLEHGRRTFAAS--- 3937 I + E+ LF T++E+L + G+I+ E SQ + + ++ S Sbjct: 559 IVYIDENPFLFKG-TIKENLCM-GEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG 616 Query: 3936 --CSHGMRKKTAFAMALLPNPEVVFMDEPFEAIDPVTAKIMRDLLQSCARHGVTVFLTSH 3763 S G +++ A A A+L P+V+ +DE IDP K++ + L R + L +H Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLH---RMDCLIILITH 673 >ref|NP_818325.1|gp24 Length = 85 Score = 34.7 bits (78), Expect = 0.35 Identities = 20/50 (40%), Positives = 23/50 (46%) Frame = -1 Query: 11660 ARTGDSIRPGSRSAPVPVLRAIPDSGSSDWLHARPGTRPQSRFRRHPPPG 11511 AR G +RP R AP PV RA+ D + A P R R PP G Sbjct: 40 ARMGHEVRPAKRPAPEPVERAVADEPLEQAVEAAP-----KRRRGRPPKG 84 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,032,493 Number of Sequences: 14420 Number of extensions: 1746051 Number of successful extensions: 6487 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 3971 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6478 length of database: 3,019,461 effective HSP length: 109 effective length of database: 1,447,681 effective search space used: 8509468918 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig93 (22,372 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 46 1e-04 ref|NP_817478.1|gp28 37 0.066 ref|NP_958295.1|hypothetical protein 37 0.086 ref|NP_817363.1|gp25 37 0.11 ref|NP_944213.1|hypothetical protein 36 0.15 ref|NP_040608.1|ea59 35 0.25 >ref|NP_046572.1|ABC transporter Length = 705 Score = 46.2 bits (108), Expect = 1e-04 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 2/172 (1%) Frame = +3 Query: 10878 VRDVTLAVRRGEILGIAGLVGSGRSELAETLFGLTPADGGEIRLRGEAV-RIDSPADAIR 11054 V D+ L + R + + I G G+G+S A++L L I L G + R D + IR Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLS--IR 556 Query: 11055 LRIGYLPEDRRQHGVVLEMPVAANTSLANLGAVSSHGMIDAIAERDLARGYVERLRIKTH 11234 RI Y+ E+ + + + N + G + I+ ++ L + Sbjct: 557 KRIVYIDENP----FLFKGTIKENLCM---GEIFDQNEIENACIMSQCHEFICNLDKQYS 609 Query: 11235 SLYAETGS-LSGGNQQKVALARWLAIEPAVLILDEPTQGVDIGSKSEIHEMM 11387 +E GS LS G +Q++ALAR + +P VLILDE +D + I+E + Sbjct: 610 YKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETL 661 Score = 35.0 bits (79), Expect = 0.33 Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 2/167 (1%) Frame = +3 Query: 10173 LLGENGAGKSTLIKVMTGAVTADSGTLLIDGHLVTHNTPALARSLGVAAVYQQPALFPDL 10352 ++GE+G GKST K ++ ++ ++G L + L+ + + + P LF Sbjct: 514 IIGESGTGKSTFAKSLSKLYKVPDKSIYLNG-LDINRYDHLSIRKRIVYIDENPFLFKG- 571 Query: 10353 TVAENIALALEGVALWRKVDWKARDRQARELLERTGADISPERAVR--TLSMPEQQIVEI 10526 T+ EN L + + +++ Q E + S + + LS ++Q + + Sbjct: 572 TIKEN--LCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLAL 629 Query: 10527 AKAIGARSKILILDEPTASLTEREVERLFRVIQTLRGEGAGIVYISH 10667 A+AI + ++LILDE SL+ + + + +TL I+ I+H Sbjct: 630 ARAILHQPQVLILDE---SLSNIDPDNTKLIYETLHRMDCLIILITH 673 >ref|NP_817478.1|gp28 Length = 320 Score = 37.4 bits (85), Expect = 0.066 Identities = 49/193 (25%), Positives = 70/193 (36%), Gaps = 19/193 (9%) Frame = +1 Query: 20407 WYAPEGAASLPAWACSTTSSWGGNSPFQPFVTVNNVSVDNPGAALTSGTAAPLTITTLNQ 20586 W P ++ +WG P VT ++++ PGA LT P I+T NQ Sbjct: 46 WGTPVNGLAVTPAPAEMELAWG-----TPVVT-QGININPPGAGLTLTPGTPAVISTANQ 99 Query: 20587 HLKPPE---AWNWNVTVQRELPLNTVLSVGYVAHRGLHAWQVYDVNQPTVGALQANPGVN 20757 +KP A++W V V P S+ + V PTVG L A G + Sbjct: 100 FIKPAGKDLAFSWGVPVVTTKPKPAFGSISSL---------VGGTIGPTVG-LNAPAGAD 149 Query: 20758 VNARRPYKGFAAIQEEESGVSS-TYNSLQVSWTRAFK---------------GGSSFGVT 20889 V A A +GV+ TY+ + + + G+ G T Sbjct: 150 VFA------LVAWDRSVTGVTGITYDGVAMEFVAQLNHNNTPANGSLVIYRLAGAGTGST 203 Query: 20890 YTLSKSMDGGSNY 20928 T S S G S Y Sbjct: 204 ETFSVSSSGSSWY 216 >ref|NP_958295.1|hypothetical protein Length = 215 Score = 37.0 bits (84), Expect = 0.086 Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Frame = -2 Query: 2316 WWTPQSTPG----KATGPPCSDRTRPR*TDPGSPPCCSGRPHDRSADRSRTSNAGSPSRC 2149 W +P S P A+ CSD PR T P SPPC RP AG+P+ C Sbjct: 13 WRSPGSAPTAPHCSASPASCSDGPAPRSTRPPSPPCRPSRP---------PCTAGTPTAC 63 Query: 2148 PANTTRSACSAR 2113 A +AR Sbjct: 64 SAGPAVPMRAAR 75 >ref|NP_817363.1|gp25 Length = 320 Score = 36.6 bits (83), Expect = 0.11 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 8/81 (9%) Frame = +3 Query: 1473 GPPGGAWGQFPASYHVQAAGAL---ATLIYTFSPTVINEFSWGINRGLQGVGPTDNNSSN 1643 G GG +F +S + G A + TF P ++ + RGL G TD +S Sbjct: 73 GGSGGTGRRFTSSSNRSGGGGGGGGAKVFRTFVPVASMGSTYSVTRGLGGAAVTDTGASG 132 Query: 1644 P-----NTGGVSTYSQSLLPL 1691 P N GG ST+S + L Sbjct: 133 PNGKPGNAGGASTFSSGSIQL 153 >ref|NP_944213.1|hypothetical protein Length = 1358 Score = 36.2 bits (82), Expect = 0.15 Identities = 24/80 (30%), Positives = 36/80 (45%) Frame = +1 Query: 7651 RDLTSPLTPLVVNGVVFAVSSGEFRSKDAKMTAAQRAQRSAPAVVYALDGATGKELWNSG 7830 + +T P PL V+G + A SG+ +K++ Q +VY D ATGK +G Sbjct: 933 KSITLPAGPLSVSGNIRATGSGDVFAKESVNVTGQ--------IVYFADKATGKTAGETG 984 Query: 7831 KTITSFVHGGGLSGAGGQIY 7890 T F+ GA +Y Sbjct: 985 ITTARFIEMLNEKGAFKTVY 1004 >ref|NP_040608.1|ea59 Length = 525 Score = 35.4 bits (80), Expect = 0.25 Identities = 13/27 (48%), Positives = 20/27 (74%) Frame = +3 Query: 10155 SSEVHALLGENGAGKSTLIKVMTGAVT 10235 S+ +HA +G NG GK+T++ M GA+T Sbjct: 187 STNIHAFIGRNGCGKTTILNGMIGAIT 213 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 109,258,517 Number of Sequences: 14420 Number of extensions: 2327322 Number of successful extensions: 8479 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 4777 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8459 length of database: 3,019,461 effective HSP length: 111 effective length of database: 1,418,841 effective search space used: 10421387145 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig94 (19,596 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_943827.1|gp49 58 3e-08 ref|NP_803710.1|ORF144 46 2e-04 ref|YP_053021.1|hypothetical protein 41 0.004 ref|NP_046584.1|putative transglycosylase 40 0.009 ref|NP_835564.1|hypothetical protein 40 0.012 ref|NP_958615.1|77ORF001 40 0.012 ref|NP_612844.1|Gp15 protein 39 0.020 ref|YP_024421.1|Hypothetical protein 38 0.034 ref|NP_112710.1|ORF47 37 0.076 ref|NP_076626.1|endopeptidase 37 0.076 ref|NP_108727.1|minor structural protein 3 37 0.100 ref|NP_663686.1|structural protein 36 0.13 ref|NP_038334.1|ORF33 35 0.22 ref|YP_195243.1|hypothetical protein 35 0.22 >ref|NP_943827.1|gp49 Length = 429 Score = 58.2 bits (139), Expect = 3e-08 Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 3/137 (2%) Frame = -3 Query: 10651 LESTFHQKRGTHEHEALDIMAPRGTPVMAVAEGNVAKLFTSKQGGLTV---YQFDDSRTW 10481 L S F + G+ +H LD A GTP+ A G VA + + G + + D Sbjct: 8 LSSGFGPRWGS-QHRGLDFAAKDGTPIYAAQGGTVAYIGRADGFGQWIVIDHPAADGGGT 66 Query: 10480 CYYYAHLDRYQEGLKEGVLLRKGEVLGYVGSTGDASPDAPHLHFAVFRLGPEKQWWKGTA 10301 Y D + GL++G + G+++ YVG+ G ++ PHLHF V W +G+ Sbjct: 67 TVYGHMWDAFATGLRQGQRVEAGQLIAYVGTNGQST--GPHLHFEVH----PTVWRQGSQ 120 Query: 10300 IDPLPLLK*RWLSHGRD 10250 IDP P WL++ R+ Sbjct: 121 IDPKP-----WLANARN 132 >ref|NP_803710.1|ORF144 Length = 260 Score = 45.8 bits (107), Expect = 2e-04 Identities = 31/95 (32%), Positives = 43/95 (45%) Frame = -3 Query: 11767 LAQGAKGAGVVRAQILLARAHFSCGEIDGSFGTNLQKAVMAFQNDRKIPASGTVDAATWG 11588 L +G +G V + Q LL + G+ DG FG N V+ FQ D + + G V TW Sbjct: 4 LRKGDRGDEVCQLQTLLNLCGYDVGKPDGIFGNNTFNQVVKFQKDNCLDSDGIVGKNTWA 63 Query: 11587 ALNSDAAPALIPYTISDQDVAGPFVPVPADMKQQA 11483 L S +P IPY +P+P K +A Sbjct: 64 ELFSKYSPP-IPYKT---------IPMPTANKSRA 88 >ref|YP_053021.1|hypothetical protein Length = 444 Score = 41.2 bits (95), Expect = 0.004 Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 12/185 (6%) Frame = +2 Query: 4439 TTDGGEHWALQFTNPDPKGFFDAIAFWDAT------HGVVVGDQLDGRAEIRTTDDGGLH 4600 +T+GG W N P+G + + AT G V DG ++T+ GG+ Sbjct: 160 STNGGATW-----NSLPQGLGTGVPSFQATPKGAASDGSTVVVVYDGGYSAKSTN-GGVS 213 Query: 4601 WERRDPPAGLPN---EGAFAASNTCLTLFGAADVWFGTGGPGAARVFHSKDRGRTWTVAP 4771 W LP G A + C+ + G V G G AR S D G TW+ P Sbjct: 214 W------VSLPRFFFSGTSAVNINCVAVSGNTIVQ--AGASGYAR--RSTDGGSTWSNLP 263 Query: 4772 TPI--RNDGASAGIFSLAFFDSNTGIAVGGDYAKDKESRQVIAVTRDGGATWSAPAAG-P 4942 + R DG ++ + V G+ + + ++ +GGATW+ G P Sbjct: 264 RGLGMRTDG------TITKMHGRGNVIVAGNSEQQNSDPTTLTISTNGGATWTGKNIGSP 317 Query: 4943 AGFRS 4957 G S Sbjct: 318 DGLGS 322 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 40.0 bits (92), Expect = 0.009 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 4/101 (3%) Frame = -3 Query: 10612 HEALDIMAPRGTPVMAVAEGNVAKLFTSKQGGLTVYQFDDSRTWCYYYAHLDRYQEGLKE 10433 H+ D A GT + ++ G V SK G V D T Y L+ +K Sbjct: 1580 HKGTDFAAKAGTAIKSLQSGKVQIAGYSKTAGNWVVIKQDDGTVAKYMHMLNT--PSVKA 1637 Query: 10432 GVLLRKGEVLGYVGSTGDASPDAPHLHFAVFRLG----PEK 10322 G ++ G+ +G VGSTG+++ + HLH + + G PEK Sbjct: 1638 GQSVKAGQTIGKVGSTGNSTGN--HLHLQIEQNGKTIDPEK 1676 >ref|NP_835564.1|hypothetical protein Length = 1509 Score = 39.7 bits (91), Expect = 0.012 Identities = 21/65 (32%), Positives = 34/65 (52%) Frame = -3 Query: 10471 YAHLDRYQEGLKEGVLLRKGEVLGYVGSTGDASPDAPHLHFAVFRLGPEKQWWKGTAIDP 10292 +AHL + + G +++ G+V+G G+TG ++ PHLHF + R G DP Sbjct: 1189 FAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFST--GPHLHFEMRR--------NGRHFDP 1238 Query: 10291 LPLLK 10277 P L+ Sbjct: 1239 EPYLR 1243 >ref|NP_958615.1|77ORF001 Length = 1509 Score = 39.7 bits (91), Expect = 0.012 Identities = 21/65 (32%), Positives = 34/65 (52%) Frame = -3 Query: 10471 YAHLDRYQEGLKEGVLLRKGEVLGYVGSTGDASPDAPHLHFAVFRLGPEKQWWKGTAIDP 10292 +AHL + + G +++ G+V+G G+TG ++ PHLHF + R G DP Sbjct: 1189 FAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFST--GPHLHFEMRR--------NGRHFDP 1238 Query: 10291 LPLLK 10277 P L+ Sbjct: 1239 EPYLR 1243 >ref|NP_612844.1|Gp15 protein Length = 983 Score = 38.9 bits (89), Expect = 0.020 Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 11/112 (9%) Frame = -3 Query: 10651 LESTFHQKRGTHEHEALDIMAPRGTPVMAVAEGNVAK-----------LFTSKQGGLTVY 10505 + +TF +H+ +D P GTPV +G V K LF GGL Sbjct: 865 ITATFPTYPSGGKHDGIDFGTPIGTPVRVSKDGVVIKRRELTTSYGKYLFVDHGGGLIT- 923 Query: 10504 QFDDSRTWCYYYAHLDRYQEGLKEGVLLRKGEVLGYVGSTGDASPDAPHLHF 10349 YAH + EG +++G+++ G+TG+++ PHLH+ Sbjct: 924 ----------IYAHNSELL--VNEGDRVKRGQIIAKTGNTGNST--GPHLHW 961 >ref|YP_024421.1|Hypothetical protein Length = 741 Score = 38.1 bits (87), Expect = 0.034 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 10/88 (11%) Frame = -1 Query: 747 GDVGRLESGVDGGEASEEEAVPGLGEVNA----------RGGKDPAVDGADDRHKDGEGD 598 G+ G +GV + +A G G N+ +GG A GA + G G+ Sbjct: 644 GNGGGSNAGVGTSNGNNAQAAGGGGGGNSAVWWDNAAAGKGGDGTASSGASGGNATGNGN 703 Query: 597 ESSAGGAHSALRGEGSDASGGGNLADGE 514 G +++ G G+D S GGN + G+ Sbjct: 704 GGGGGSGGTSILGNGTDGSAGGNGSGGK 731 >ref|NP_112710.1|ORF47 Length = 918 Score = 37.0 bits (84), Expect = 0.076 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%) Frame = -3 Query: 10612 HEALDIMAPRGT-PVMAVAEGNVAKL---FTSKQGGLTVYQFDDSRTWCYYYAHLDRYQE 10445 H A+D++ T P++A +G V + + G TV + D Y AH R Sbjct: 810 HNAMDLVNGNPTTPILASGDGQVVQAGSNYYDWYGNYTVIKHADGLYTGY--AHQSRIDV 867 Query: 10444 GLKEGVLLRKGEVLGYVGSTGDASPDAPHLHF 10349 + + V +KG+ +G +G+TG + PHLHF Sbjct: 868 SVGQNV--KKGQQIGLMGATGPVT--GPHLHF 895 >ref|NP_076626.1|endopeptidase Length = 894 Score = 37.0 bits (84), Expect = 0.076 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%) Frame = -3 Query: 10612 HEALDIMAPRGT-PVMAVAEGNVAKL---FTSKQGGLTVYQFDDSRTWCYYYAHLDRYQE 10445 H A+D++ T P++A +G V + + G TV + D Y AH R Sbjct: 786 HNAMDLVNGNPTTPILASGDGQVVQAGSNYYDWYGNYTVIKHADGLYTGY--AHQSRIDV 843 Query: 10444 GLKEGVLLRKGEVLGYVGSTGDASPDAPHLHF 10349 + + V +KG+ +G +G+TG + PHLHF Sbjct: 844 SVGQNV--KKGQQIGLMGATGPVT--GPHLHF 871 >ref|NP_108727.1|minor structural protein 3 Length = 906 Score = 36.6 bits (83), Expect = 0.100 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%) Frame = -3 Query: 10612 HEALDIMAPRGT-PVMAVAEGNVAKL---FTSKQGGLTVYQFDDSRTWCYYYAHLDRYQE 10445 H A+D++ T P++A +G V + + + G TV + D Y AH R Sbjct: 798 HNAMDLVNGNPTTPILASNDGQVVQAGSNYYNWYGNYTVIKHADGLYTGY--AHQSRIDV 855 Query: 10444 GLKEGVLLRKGEVLGYVGSTGDASPDAPHLHF 10349 + + V +KG+ +G +G+TG + PHLHF Sbjct: 856 SVGQNV--KKGQQIGLMGATGPVT--GPHLHF 883 >ref|NP_663686.1|structural protein Length = 908 Score = 36.2 bits (82), Expect = 0.13 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%) Frame = -3 Query: 10612 HEALDIMAPRGT-PVMAVAEGNVAKL---FTSKQGGLTVYQFDDSRTWCYYYAHLDRYQE 10445 H A+D++ T P++A +G V + + G TV + D Y AH R Sbjct: 800 HNAMDLVNGNPTTPILASNDGQVVQAGSNYYDWYGNYTVIKHADGLYTGY--AHQSRIDV 857 Query: 10444 GLKEGVLLRKGEVLGYVGSTGDASPDAPHLHF 10349 + + V +KG+ +G +G+TG + PHLHF Sbjct: 858 SVGQNV--KKGQQIGLMGATGPVT--GPHLHF 885 >ref|NP_038334.1|ORF33 Length = 1554 Score = 35.4 bits (80), Expect = 0.22 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%) Frame = -3 Query: 14344 VTSESAGKSLVTLRSKYEAWSAMHKEIVGYLERQQVDLAQAKLAAPDFISAVDEMRR--- 14174 +TSE A K+L L+ KY+ +A +G LER A +AA F +D+M+ Sbjct: 440 ITSEMAQKALFELQDKYKNATANFSTTIGGLERTIQSRMPAIVAA--FRDPIDKMKNPFL 497 Query: 14173 ------LADEMSDREAKRLSSEASSAEIVSLVGFGVLTLLSFGICALVLVYVRGVSESLG 14012 +AD ++ + K L S + F + L G L ++ G+++ + Sbjct: 498 QQIGNWVADPKTETKFKDLGDHVSKGLSTIMDAFSKVFNLGSGTDKL-NSFMDGLNKLVD 556 Query: 14011 RLTDSLAGNSQQV 13973 L+ S+A N+ ++ Sbjct: 557 NLSKSVANNAPKI 569 >ref|YP_195243.1|hypothetical protein Length = 749 Score = 35.4 bits (80), Expect = 0.22 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 4/99 (4%) Frame = -3 Query: 10624 GTHEHEALDIMAPRGTPVMAVAEGNVAKLFTSKQGGLTVYQF--DDSRTWCYYYAHLDRY 10451 G+ H +D P+GT + G V K+ G + DD Y + Sbjct: 557 GSTNHMGIDYGTPQGTKLAIKKPGRVQKIVVPAPGNMGEVHIVHDDGTETRYLHLSKVAV 616 Query: 10450 QEGLK--EGVLLRKGEVLGYVGSTGDASPDAPHLHFAVF 10340 ++G + G LL GE G G+ G PHLHF + Sbjct: 617 RQGAQVVAGTLL--GETGGEPGTPGAGPSTGPHLHFEYY 653 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,486,026 Number of Sequences: 14420 Number of extensions: 1832403 Number of successful extensions: 6787 Number of sequences better than 0.5: 14 Number of HSP's better than 0.5 without gapping: 4075 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6732 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 9202968881 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig95 (20,033 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817358.1|gp20 59 2e-08 ref|NP_818340.1|gp39 56 2e-07 ref|NP_818228.1|gp169 54 6e-07 ref|NP_040730.1|pre-neck appendage protein 47 8e-05 ref|NP_817998.1|gp25 47 1e-04 ref|NP_817477.1|gp27 42 0.002 ref|NP_958261.1|hypothetical protein 36 0.13 >ref|NP_817358.1|gp20 Length = 628 Score = 58.9 bits (141), Expect = 2e-08 Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 12/216 (5%) Frame = -3 Query: 13566 AHTILCAQQPDPFAAIAPRMQQFVDKGEASGIVTLIATRDRILHIGAVGKNDMSGARKLR 13387 AHT P+ AA+ ++Q + G++ I T R + A G R L Sbjct: 68 AHTAGDLLSPEDQAAVDLIVEQSRAETGQPGVMLQI-TGPRGNYAKAYGTTVGGTVRPLT 126 Query: 13386 TDDIFWIASMSKPLTAVCIAILADDGKLSFDDTLAKHLPEFAGIMVNQNGRSVQPSRPIT 13207 DD F + S +K TA+ D G ++ DDTL +++P GI NG + IT Sbjct: 127 LDDHFRMGSSTKMFTAIAFFQAVDKGLITLDDTLEQYVP---GI---PNGTA------IT 174 Query: 13206 LRDVLTHTSGLGEMTNREPHL----------TLAQTSRNLSQQALSFQPGSRWSYSTAGI 13057 + +L+ SG+ E T L T A+ + + +F PG+ + Y+ + Sbjct: 175 MGHMLSMRSGIAEYTAGINALWITLFPTWPWTGAKDFLSTMKGPSNFYPGTDYLYTNSNF 234 Query: 13056 DVLGRVVEVA--GGMPFDQFLQKRVLDPLGMKDTSF 12955 ++G V+E+ P Q ++ ++DPLG+ +TS+ Sbjct: 235 ALIGMVLEIVDPAHRPIKQIFKEDIIDPLGLTETSW 270 >ref|NP_818340.1|gp39 Length = 628 Score = 55.8 bits (133), Expect = 2e-07 Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 12/184 (6%) Frame = -3 Query: 13470 VTLIATRDRILHIGAVGKNDMSGARKLRTDDIFWIASMSKPLTAVCIAILADDGKLSFDD 13291 V L T R + A G R L DD F + S +K TA+ D G ++ DD Sbjct: 99 VMLQITGPRGNYAKAYGTTVGGTVRPLTLDDHFRMGSSTKMFTAIAFFQAVDKGLITLDD 158 Query: 13290 TLAKHLPEFAGIMVNQNGRSVQPSRPITLRDVLTHTSGLGEMTNREPHL----------T 13141 TL +++P GI NG + IT+ +L+ SG+ E T L T Sbjct: 159 TLEQYVP---GI---PNGTA------ITMGHMLSMRSGIAEYTAGINALWITLFPTWPWT 206 Query: 13140 LAQTSRNLSQQALSFQPGSRWSYSTAGIDVLGRVVEVA--GGMPFDQFLQKRVLDPLGMK 12967 A+ + +F PG+ + Y+ + ++G V+E+ P Q ++ ++DPLG+ Sbjct: 207 GAKDFLGSMKGPSNFYPGTDYLYTNSNFALIGMVLEIVDPAHRPIKQIFKEDIIDPLGLT 266 Query: 12966 DTSF 12955 +TS+ Sbjct: 267 ETSW 270 >ref|NP_818228.1|gp169 Length = 358 Score = 53.9 bits (128), Expect = 6e-07 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 13/169 (7%) Frame = -3 Query: 13422 GKNDMSGARKLRTDDIFWIASMSKPLTAVCIAILADDGKLSFDDTLAKHLPEFAGIMVNQ 13243 G ++ + + D F AS++K LTA+ I D GK+S DD + K++ + Sbjct: 44 GLRTVAPDKPMSFDAKFRAASVTKTLTAMAILREVDKGKISLDDVVDKYVAQI------P 97 Query: 13242 NGRSVQPSRPITLRDVLTHTSGLGEMTN------------REPHLTLAQTSRNLSQQALS 13099 NGR +T++ VL SGL E P + + + + Sbjct: 98 NGRQ------LTVKQVLMMRSGLAEYQTDIIIALTFLAFPTWPTFSPEGAMQAVRRNKAV 151 Query: 13098 FQPGSRWSYSTAGIDVLGRVVE-VAGGMPFDQFLQKRVLDPLGMKDTSF 12955 F+PG+++ Y + +L ++E V GG + + L ++ PLGM TSF Sbjct: 152 FKPGAQYMYCGSNYHLLALILEKVNGGKGWKRILMDDLVKPLGMTSTSF 200 >ref|NP_040730.1|pre-neck appendage protein Length = 854 Score = 47.0 bits (110), Expect = 8e-05 Identities = 61/238 (25%), Positives = 98/238 (41%), Gaps = 12/238 (5%) Frame = -3 Query: 12303 VDITTFGAKGDGKTQNRDAINKAIETXXXXXXGTVEFPAGTWLTG-SLRLRSNVTLHLDR 12127 V + T+GAKGDG T + A KAIE+ V P GT++ ++L SN L Sbjct: 105 VSVKTYGAKGDGVTDDIKAFEKAIES-----GFPVYVPYGTFMVSRGIKLPSNTVL---- 155 Query: 12126 GAVIEASSDASSYDAPEPNQWDKFQDF---GHSHFHNSLIWGEGLENI-----AITGGGR 11971 A + N KF D G S +N + G ENI + G + Sbjct: 156 ------------TGAGKRNAVIKFMDSVGRGESLMYNENV-TTGNENIFLSSFTLDGNNK 202 Query: 11970 ISGKALARERGAAGDKAIALKLCHNVTLRDFSISTGGHFGILAT--GIDNLTI-DNIMID 11800 G+ ++ G + + ++++ CHNV +RD GI T G+D + D Sbjct: 203 RLGQGIS-GIGGSRESNLSIRACHNVYIRDIEAVDCTLHGIDITCGGLDYPYLGDGTTAP 261 Query: 11799 TNRDGIDIDSCRNVRISNSSINAPNDDAITLKGSHALGEPRVSENITITNSLVSGFEI 11626 + I I++C + I + I + ++ +PR++ N +GFEI Sbjct: 262 NPSENIWIENCEATGFGDDGITTHHSQYINILNCYS-HDPRLTAN-------CNGFEI 311 >ref|NP_817998.1|gp25 Length = 941 Score = 46.6 bits (109), Expect = 1e-04 Identities = 54/226 (23%), Positives = 92/226 (40%), Gaps = 8/226 (3%) Frame = -3 Query: 13590 SAVLGLLAAHTILCAQQPDPFAAIAPRMQQFVDKGEASGI---VTLIATRDRILHIGAVG 13420 SAV+ + + DP ++ ++ Q V +G A G V L T ++ G Sbjct: 55 SAVVEVATDEVVPTESPMDP--SLTAQIDQIVAQGMADGAGPGVGLYITSPHGQYLQTYG 112 Query: 13419 KNDMSGARKLRTDDIFWIASMSKPLTAVCIAILADDGKLSFDDTLAK-HLPEFAGIMVNQ 13243 + + L D F I S +KP TA + + DG LS +DT+ + PEF ++Q Sbjct: 113 IS--TAGVPLTPDMHFRIGSATKPFTATAVLMAIQDGLLSLEDTIDQFDTPEFKLSDIDQ 170 Query: 13242 NGRSVQPSRPITLRDVLTHTSGLGEMTN----REPHLTLAQTSRNLSQQALSFQPGSRWS 13075 + + V L M N + L+ + R L+ +PG+ + Sbjct: 171 ADKIKIRHLMMMRSGVFNEQRDLSFMLNFALMPKSELSDSAWFRILTSHKSVREPGTGFE 230 Query: 13074 YSTAGIDVLGRVVEVAGGMPFDQFLQKRVLDPLGMKDTSFWVAPEK 12937 Y A ++ V+ G + + ++ PLG+ +TS W A K Sbjct: 231 YVNANWFIISLVLRAVRGRHIRDIITEDIITPLGLTETS-WPATAK 275 >ref|NP_817477.1|gp27 Length = 946 Score = 42.0 bits (97), Expect = 0.002 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 12/158 (7%) Frame = -3 Query: 13392 LRTDDIFWIASMSKPLTAVCIAILADDGKLSFDDTLAK-HLPEFAGIMVNQNGRSVQPSR 13216 L D F I S +KP TA + + DG +S +DT+ + PEF + + Sbjct: 120 LTPDMHFRIGSATKPFTATAVLMAIQDGLISLEDTIDQFDTPEF-------KLSDIDRAN 172 Query: 13215 PITLRDVLTHTSGL-GEMTNREPHLTLAQTSRN----------LSQQALSFQPGSRWSYS 13069 I +R ++ SG+ E + L A ++ L L PG+ + Y Sbjct: 173 EIKIRHLMMMRSGVFNEQRDLTFMLNFALFPKSGFSDQSWFNVLKSHKLVRDPGTEFEYV 232 Query: 13068 TAGIDVLGRVVEVAGGMPFDQFLQKRVLDPLGMKDTSF 12955 ++ +++ G Q L +++PLG+ +TS+ Sbjct: 233 NGNWFLISLILKAVRGKHIRQILYDDIINPLGLTETSW 270 >ref|NP_958261.1|hypothetical protein Length = 206 Score = 36.2 bits (82), Expect = 0.13 Identities = 28/88 (31%), Positives = 39/88 (44%) Frame = +1 Query: 16114 AMRDALDNAGDPFYLRGPLADWAKRARPQRSWRERNSPTGAVWLLPRHDRAHLRLLINDQ 16293 A+ D+ G P L ADW R R QR+ +PT A WLL R+ ++ Sbjct: 31 ALCSLADSLGIPDAL--DYADWYGRDREQRT-----APTAARWLLARYGTGPAVSALHKA 83 Query: 16294 VARNLDHHAVDGAGELERVLELGGDRRP 16377 +D +A + A L+RVL G P Sbjct: 84 ERLRIDGYAREAAARLDRVLGTGRAASP 111 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,846,368 Number of Sequences: 14420 Number of extensions: 2181751 Number of successful extensions: 7798 Number of sequences better than 0.5: 7 Number of HSP's better than 0.5 without gapping: 4586 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7784 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 9412224987 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig96 (21,902 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_835731.1|similar to RNA polymerase ECF-type sigma factor 44 5e-04 ref|YP_195236.1|putative tail tube associated base plate protein... 37 0.084 ref|NP_817697.1|gp19 36 0.19 ref|NP_958258.1|hypothetical protein 35 0.42 >ref|NP_835731.1|similar to RNA polymerase ECF-type sigma factor Length = 199 Score = 44.3 bits (103), Expect = 5e-04 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 5/175 (2%) Frame = +3 Query: 5445 ERAYEELLTRFQQPVYALALRLLDDQGEACDVVQEVFLKVFR-NIGSFRGQSTLKTWIYR 5621 E YE L +R+ + + + + E D+VQ+ FL++ R + S ++ T+IY Sbjct: 22 EIRYEVLYSRYAERLKNFGKKYTKSEHEIEDMVQDTFLRLLRFDSYSVVEGASFATYIY- 80 Query: 5622 ITVNEAHNARRWFFRHRRA-EVELDKAPEDSRNLKEVIPDRSRSPFDEAFSREQHV-MIE 5795 TV ++ R+ + RR + +++ R+ I + DE + ++ V +I+ Sbjct: 81 -TVFKSVVITRYRYNSRRGPRIYMEEITFGDRDTPVEI-ESGEPLLDEQYELKRAVEVIQ 138 Query: 5796 AALER-INPIFREAVVLRDITD-LAYEEIAEVLGVSLGTVKSRILRGREALREEL 5954 LE+ NP + ++ + A + +AE + +GTVKSRI R R LRE L Sbjct: 139 EELEKGDNPFYNIMKQYMELKEKCAMQALAEKNNIPIGTVKSRINRARHRLREAL 193 >ref|YP_195236.1|putative tail tube associated base plate protein, gp48 Length = 332 Score = 37.0 bits (84), Expect = 0.084 Identities = 41/143 (28%), Positives = 59/143 (41%), Gaps = 3/143 (2%) Frame = -1 Query: 12455 WDSLGVPGTVAR-MRAEGCAI-PENVERMLASGATSFYEFADRDGEPGVRYYDLNATAYR 12282 W G T A MR G A+ PE+V + +F F R P + D +TA Sbjct: 105 WGGKGFTNTGADIMRTAGSALNPESVGAAIGQVGQAFGNFMQRG--PSL-VADGVSTAIN 161 Query: 12281 NLP-KRPGVLVLNDIKRARGVVKSNPGASLVDLGDGVLCLEFHSKMNALGEDMVRMVSSA 12105 LP K G + +ND+ G V NP A L+ G + + K+ + RM+ Sbjct: 162 ALPGKIGGAVDINDVLGGIGGVILNPNAELLFTGFDLRSFGLNFKLTPRNKLEARMIRDI 221 Query: 12104 LDEVDRAFQALVIANDGENFSVG 12036 + +A + AN G FS G Sbjct: 222 ITSFKKASLPTLGANPGSVFSKG 244 >ref|NP_817697.1|gp19 Length = 750 Score = 35.8 bits (81), Expect = 0.19 Identities = 38/155 (24%), Positives = 53/155 (34%), Gaps = 9/155 (5%) Frame = +1 Query: 10858 LGPVIDEPGVGRGLASAGGNHRH--GFGAAGNDDIGAARADAFGGEGDGLETGTAEAIDG 11031 +GP PG G+ S G + G GA N A A G GDG + A Sbjct: 573 IGPAASTPGTTGGVTSFGSLAQSVPGIGAISNGVGFLASASKPGRGGDGGSAFMSRANST 632 Query: 11032 HRRNGIGQTGTERGLARHVGAGLAFGHGAAEDDVVHQVERRRIAIEHGPDGDGGEVVRAG 11211 + G+ G LA G A G R+ G G G ++G Sbjct: 633 TYTSSPGKAGEGSALAAGGAPGAANGGTGGAGATAPMAGERKAGGGGGAGGGGRAGNQSG 692 Query: 11212 IAQGAA-------GGFTDGGSEAIDNNSVSHGLSP 11295 G GG + GG AI+ ++ ++P Sbjct: 693 TITGGTGGNGGFPGGASGGGGAAINIGTIGFNVAP 727 >ref|NP_958258.1|hypothetical protein Length = 266 Score = 34.7 bits (78), Expect = 0.42 Identities = 48/177 (27%), Positives = 69/177 (38%), Gaps = 2/177 (1%) Frame = +2 Query: 3371 VERTGWVRNIWRIPLDARGRATAAAMRVTSGPESIGDVAVSRDGRILFTAGSQNFQVWGL 3550 V+ T W + +PLD ATAA R P + R+G ++W Sbjct: 24 VDATAWASALHDVPLD--DDATAAVARYYGTPPT-------REGE----------RLWIQ 64 Query: 3551 PLDANTGKPAGVPQRLTDGAATLEHPAISADGRLLLYDAQRYGLQQLFLRDLASGEERVA 3730 P +G+ A +RL PA G + QR + D+A+G Sbjct: 65 PHHVKSGRLAIRQERLGTTLPGYVAPAELETGAEFIARRQRQ------IDDVAAGR---I 115 Query: 3731 AAKPAGVSGG--QFLRGGRIIYGSGGDVYVTGESRKLAAGGRPLAVDRKEEIALVRS 3895 A+P + GG + LR G G G + R LAA GR L + E+ LVR+ Sbjct: 116 PARPVPLKGGMPRELRTGLAALGWQG----LDDERGLAAVGRTLTAESSEQARLVRT 168 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,553,273 Number of Sequences: 14420 Number of extensions: 2236352 Number of successful extensions: 7863 Number of sequences better than 0.5: 4 Number of HSP's better than 0.5 without gapping: 4603 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7832 length of database: 3,019,461 effective HSP length: 111 effective length of database: 1,418,841 effective search space used: 10200047949 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig97 (28,188 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_025041.1|putative transposase B 101 4e-21 ref|NP_859396.1|hypothetical protein 96 2e-19 ref|NP_958229.1|gene 55 protein 89 2e-17 ref|NP_536395.1|ISBt3 transposase subunit protein 86 3e-16 ref|NP_818340.1|gp39 54 7e-07 ref|NP_818228.1|gp169 54 7e-07 ref|NP_817358.1|gp20 52 2e-06 ref|NP_817998.1|gp25 50 1e-05 ref|NP_817477.1|gp27 50 2e-05 ref|NP_817913.1|gp62 40 0.013 ref|NP_075297.1|gp30 36 0.18 >ref|YP_025041.1|putative transposase B Length = 280 Score = 101 bits (252), Expect = 4e-21 Identities = 54/138 (39%), Positives = 82/138 (59%), Gaps = 1/138 (0%) Frame = -1 Query: 28167 YLAVILDAFSRRVIGWHLGETLEVSLTLNALRMALGQRSVSPGLVHHSDRGVQYASHDYT 27988 YL+ I+D SRR+IG+ + ++ L L L A+ R+++ L+ H+D G QY S DY Sbjct: 133 YLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIHTDLGSQYTSDDYN 192 Query: 27987 QLLQDNGIEISMSRKANPWDNAACESFMKTLKYEEVHRTE-YRNLAHARASIKTFLEKIY 27811 Q L + I S SRK P+DNA ESF +LK E V+ + + A A + ++ Y Sbjct: 193 QRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAFY 252 Query: 27810 NQKRLHSSLSYRSPVEFE 27757 N+KR+HSSL Y++P++ E Sbjct: 253 NRKRIHSSLGYQTPLQVE 270 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 95.9 bits (237), Expect = 2e-19 Identities = 51/139 (36%), Positives = 78/139 (56%) Frame = -1 Query: 28173 FVYLAVILDAFSRRVIGWHLGETLEVSLTLNALRMALGQRSVSPGLVHHSDRGVQYASHD 27994 FVY+A I+D F+ ++GW + ++E + L+AL AL R S G +HHSD+G QY S Sbjct: 146 FVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPS-GTIHHSDKGSQYVSLA 204 Query: 27993 YTQLLQDNGIEISMSRKANPWDNAACESFMKTLKYEEVHRTEYRNLAHARASIKTFLEKI 27814 YT+ L++ G+ S + +DNA ES K E +HR ++N A + T+++ Sbjct: 205 YTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVD-W 263 Query: 27813 YNQKRLHSSLSYRSPVEFE 27757 YN +RL L + P E E Sbjct: 264 YNNRRLLGRLGHTPPAEAE 282 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 89.0 bits (219), Expect = 2e-17 Identities = 50/142 (35%), Positives = 76/142 (53%) Frame = -1 Query: 28179 EEFVYLAVILDAFSRRVIGWHLGETLEVSLTLNALRMALGQRSVSPGLVHHSDRGVQYAS 28000 + + YLAV+LD F+R+ +GW + + + LT+ AL MA R G++ HSD+G Y S Sbjct: 152 KRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTS 211 Query: 27999 HDYTQLLQDNGIEISMSRKANPWDNAACESFMKTLKYEEVHRTEYRNLAHARASIKTFLE 27820 + QLL I SMSR+ N WDN+ E F ++LK E + Y + + A +I ++ Sbjct: 212 RQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIV 271 Query: 27819 KIYNQKRLHSSLSYRSPVEFEH 27754 Y+ R H P E E+ Sbjct: 272 GYYSALRPHEYNGGLPPNESEN 293 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 85.5 bits (210), Expect = 3e-16 Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 7/146 (4%) Frame = -1 Query: 28173 FVYLAVILDAFSRRVIGWHLGETLEVSLTLNALRMALGQRSVSPG----LVHHSDRGVQY 28006 ++Y+A ++D F+RR++GW + ++ L+AL AL R PG L+HHSDRG QY Sbjct: 127 WLYVAFVIDVFARRIVGWRVSSSMTTDFVLDALEQALYARQ--PGEDGTLIHHSDRGSQY 184 Query: 28005 ASHDYTQLLQDNGIEISMSRKANPWDNAACESFMKTLKYEEVHRTEYRNLAHARASIK-T 27829 S Y++ L + GIE S+ + + +DNA E+ K E +HR R R S++ Sbjct: 185 VSIRYSERLAEAGIEPSVGSRGDSYDNALAETINGLYKTELIHR---RAPWKTRESVELA 241 Query: 27828 FLEKI--YNQKRLHSSLSYRSPVEFE 27757 LE + YN RL L Y P E E Sbjct: 242 TLEWVAWYNHHRLMEPLGYIPPAEAE 267 >ref|NP_818340.1|gp39 Length = 628 Score = 54.3 bits (129), Expect = 7e-07 Identities = 70/293 (23%), Positives = 116/293 (39%), Gaps = 23/293 (7%) Frame = +3 Query: 13524 PGMVVGITDRTRTLKIGAYGYANLNSKTRITPETLFEIGSVSKSFTAISLMELFDEDRFD 13703 PG+++ IT R AYG + +T + F +GS +K FTAI+ + D+ Sbjct: 97 PGVMLQITG-PRGNYAKAYGTTVGGTVRPLTLDDHFRMGSSTKMFTAIAFFQAVDKGLIT 155 Query: 13704 PQEPVAKYLPWFALKSRYRAITGHDLLTHTSGLQNYRPDLASMPFAAL------SLRDFE 13865 + + +Y+P + AIT +L+ SG+ Y + ++ +DF Sbjct: 156 LDDTLEQYVPGIPNGT---AITMGHMLSMRSGIAEYTAGINALWITLFPTWPWTGAKDFL 212 Query: 13866 PS------YAPGEHYWYSNLGFQVLGYVLEHIDAA--KYDTIVQRRILNRLGMSATHAAI 14021 S + PG Y Y+N F ++G VLE +D A I + I++ LG++ T Sbjct: 213 GSMKGPSNFYPGTDYLYTNSNFALIGMVLEIVDPAHRPIKQIFKEDIIDPLGLTET---- 268 Query: 14022 DDALRARLPQSYSHWPYTGEF--------TEEPWFEYLAADGSIASTAGDMTAYARLILN 14177 WP G T P +L A G++A+ D T +A + + Sbjct: 269 -------------SWPPIGPVPPPASIADTFNP--NFLDAAGALATNINDYTKFAEALRD 313 Query: 14178 RGVAPSGRLLSERAFAQLTRPT-LNSYAYGLFVRQDDGDTVIQHGGGIAGFQT 14333 + S PT + YA G ++ + +G GI F T Sbjct: 314 NAMGLSPESYDAWLSTFWKHPTGWDPYANGFYIPSE-----YYYGYGIESFGT 361 >ref|NP_818228.1|gp169 Length = 358 Score = 54.3 bits (129), Expect = 7e-07 Identities = 72/299 (24%), Positives = 123/299 (41%), Gaps = 28/299 (9%) Frame = +3 Query: 13524 PGMVVGITDRTRTLKIGAYGYANLNSKTRITPETLFEIGSVSKSFTAISLMELFDEDRFD 13703 PGM++ IT ++ G + ++ + F SV+K+ TA++++ D+ + Sbjct: 26 PGMMLKITGPAGDYEL-TRGLRTVAPDKPMSFDAKFRAASVTKTLTAMAILREVDKGKIS 84 Query: 13704 PQEPVAKYLPWFALKSRYRAITGHDLLTHTSGLQNYRPDLA-SMPFAAL----------- 13847 + V KY+ A R +T +L SGL Y+ D+ ++ F A Sbjct: 85 LDDVVDKYV---AQIPNGRQLTVKQVLMMRSGLAEYQTDIIIALTFLAFPTWPTFSPEGA 141 Query: 13848 --SLRDFEPSYAPGEHYWYSNLGFQVLGYVLEHIDAAK-YDTIVQRRILNRLGMSATHAA 14018 ++R + + PG Y Y + +L +LE ++ K + I+ ++ LGM++T + Sbjct: 142 MQAVRRNKAVFKPGAQYMYCGSNYHLLALILEKVNGGKGWKRILMDDLVKPLGMTST--S 199 Query: 14019 IDDALRARLPQSYSHWPYTGEFTEEPWFE-------YLAADGSIASTAGDMTAYARLILN 14177 D A +PQ TG F + W E + G + +T GDM +A + Sbjct: 200 FPDG--ATIPQPEVKGYTTGVF--KKWSENGKVNANFHGPAGGMVTTMGDMHKWA-TAMR 254 Query: 14178 RGV--APSGRLLSERAFAQL----TRPTLNSYAYGLFVRQDDGDTVIQHGGGIAGFQTL 14336 GV P R L F+ + PT Y GL H G I G+ T+ Sbjct: 255 DGVFLKPETRQLQHSLFSSVPWTDEGPTAFGYGMGLL----SFGKWFGHDGWIPGYGTV 309 >ref|NP_817358.1|gp20 Length = 628 Score = 52.4 bits (124), Expect = 2e-06 Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 22/245 (8%) Frame = +3 Query: 13524 PGMVVGITDRTRTLKIGAYGYANLNSKTRITPETLFEIGSVSKSFTAISLMELFDEDRFD 13703 PG+++ IT R AYG + +T + F +GS +K FTAI+ + D+ Sbjct: 97 PGVMLQITG-PRGNYAKAYGTTVGGTVRPLTLDDHFRMGSSTKMFTAIAFFQAVDKGLIT 155 Query: 13704 PQEPVAKYLPWFALKSRYRAITGHDLLTHTSGLQNYRPDLASM--------PFAA----L 13847 + + +Y+P + AIT +L+ SG+ Y + ++ P+ L Sbjct: 156 LDDTLEQYVPGIPNGT---AITMGHMLSMRSGIAEYTAGINALWITLFPTWPWTGAKDFL 212 Query: 13848 SLRDFEPSYAPGEHYWYSNLGFQVLGYVLEHIDAA--KYDTIVQRRILNRLGMSATHAAI 14021 S ++ PG Y Y+N F ++G VLE +D A I + I++ LG++ T Sbjct: 213 STMKGPSNFYPGTDYLYTNSNFALIGMVLEIVDPAHRPIKQIFKEDIIDPLGLTET---- 268 Query: 14022 DDALRARLPQSYSHWPYTGEFTEEPWF------EYLAADGSIASTAGDMTAYARLILNR- 14180 WP G +L A G++A+ D T +A + + Sbjct: 269 -------------SWPPIGPVPPPASIADMFNPNFLDAAGALATNINDYTKFAEALRDNA 315 Query: 14181 -GVAP 14192 G++P Sbjct: 316 MGLSP 320 >ref|NP_817998.1|gp25 Length = 941 Score = 50.1 bits (118), Expect = 1e-05 Identities = 76/326 (23%), Positives = 129/326 (39%), Gaps = 24/326 (7%) Frame = +3 Query: 13611 ITPETLFEIGSVSKSFTAISLMELFDEDRFDPQEPVAKY-LPWFALKSRYRA--ITGHDL 13781 +TP+ F IGS +K FTA +++ + ++ + ++ P F L +A I L Sbjct: 120 LTPDMHFRIGSATKPFTATAVLMAIQDGLLSLEDTIDQFDTPEFKLSDIDQADKIKIRHL 179 Query: 13782 LTHTSGLQNYRPDL------ASMPFAALS-------LRDFEPSYAPGEHYWYSNLGFQVL 13922 + SG+ N + DL A MP + LS L + PG + Y N + ++ Sbjct: 180 MMMRSGVFNEQRDLSFMLNFALMPKSELSDSAWFRILTSHKSVREPGTGFEYVNANWFII 239 Query: 13923 GYVLEHIDAAKYDTIVQRRILNRLGMSATHAAIDDALRARLPQSYSHWPYTGEFTEEPWF 14102 VL + I+ I+ LG++ T + A P + H G T E Sbjct: 240 SLVLRAVRGRHIRDIITEDIITPLGLTETSWPATAKMPA--PYAVGHDGLLGGITTETHP 297 Query: 14103 EYLAADGSIASTAGDMTAYARLILNRG-VAPSGRLLSERAFAQLTRPTLNSYA---YGLF 14270 Y GS+ ST D+ + + + + P L + F + P+ + YA YG Sbjct: 298 TYPHCAGSLVSTLTDLHKWVGHMRDATLLTPEMAELRDSMFCPI--PSGSPYAPPEYGYG 355 Query: 14271 VRQDDGDTVIQHGGGIAGFQTLLEMHMQDGFGIIAMGN---GGLDRELVQFAIASVKAAL 14441 + D H G G++ H + G I+ N G + VQ + + + Sbjct: 356 LAWYDYGDWKGHAGSWVGYECSPMYHKESGSIIVCYENSQSAGKNGVGVQ-TFSQIFPEI 414 Query: 14442 RDKPLPDP-PARPSSAAITNSGDFAG 14516 LPD P + ++ + +S F G Sbjct: 415 ARLILPDSMPTKEYTSCVISSDPFLG 440 >ref|NP_817477.1|gp27 Length = 946 Score = 49.7 bits (117), Expect = 2e-05 Identities = 81/356 (22%), Positives = 135/356 (37%), Gaps = 38/356 (10%) Frame = +3 Query: 13611 ITPETLFEIGSVSKSFTAISLMELFDEDRFDPQEPVAKY-LPWFALKSRYRA--ITGHDL 13781 +TP+ F IGS +K FTA +++ + ++ + ++ P F L RA I L Sbjct: 120 LTPDMHFRIGSATKPFTATAVLMAIQDGLISLEDTIDQFDTPEFKLSDIDRANEIKIRHL 179 Query: 13782 LTHTSGLQNYRPDLASMPFAAL-------------SLRDFEPSYAPGEHYWYSNLGFQVL 13922 + SG+ N + DL M AL L+ + PG + Y N + ++ Sbjct: 180 MMMRSGVFNEQRDLTFMLNFALFPKSGFSDQSWFNVLKSHKLVRDPGTEFEYVNGNWFLI 239 Query: 13923 GYVLEHIDAAKYDTIVQRRILNRLGMSATHAAIDDALRARLPQSYSHWPYTGEFTEEPWF 14102 +L+ + I+ I+N LG++ T A+ A P + H G T E Sbjct: 240 SLILKAVRGKHIRQILYDDIINPLGLTETSWPATAAMPA--PYAVGHDGLLGGITTETHP 297 Query: 14103 EYLAADGSIASTAGDMTAYARLILNRG-VAPSGRLLSERAFAQLTRPT---LNSYAYGLF 14270 + GSI ST D+ + + + + P L + F + + Y YGL Sbjct: 298 TWPHCAGSIVSTLTDLHKWCGHMRDATLLTPEMEQLRDSMFCPIPSGSPFAPPEYGYGL- 356 Query: 14271 VRQDDGDTVIQHGGGIAGFQTLLEMHMQDGFGII------AMGNGGLDRELVQFAIASVK 14432 D GD H G G++ H + G I+ + G G+ + + Sbjct: 357 AWYDYGDWK-GHAGSWVGYECSPMYHKESGTIIVCYENSQSTGTNGVGVQTFSQIFPQIA 415 Query: 14433 AALRDKPLP-----------DP-PARPSSAAITNSGDFAGLFSSGARSLEFSAAGN 14564 L +P DP +P+ A + G + G S+ F+AA N Sbjct: 416 ELLVPGSMPVKEYASCAISSDPFLGKPAPANLGYKGVSTPITGLGGGSVNFTAAAN 471 >ref|NP_817913.1|gp62 Length = 496 Score = 40.0 bits (92), Expect = 0.013 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 11/186 (5%) Frame = +3 Query: 13575 AYGYANLNSKTRITPETLFEIGSVSKSFTAISLMELFDEDRFDPQEPVAKYLPWFALKSR 13754 AYG + +T +T GS+SK + ++ D + + +++ A + Sbjct: 117 AYGGDRTSGQT-LTLAHRTRYGSISKMYCNTLVLAQIDAGHISFDDTLDQFVSGVANGDK 175 Query: 13755 YRAITGHDLLTHTSGLQNYRPDLASM-------PFAALS----LRDFEPSYAPGEHYWYS 13901 IT LL SG+++Y + A++ P + +R +EP Y PGE YS Sbjct: 176 ---ITIRHLLMMQSGIKDYLGEDAAVQQSYFLNPTSTFDPMPYIRSYEPMYEPGESSSYS 232 Query: 13902 NLGFQVLGYVLEHIDAAKYDTIVQRRILNRLGMSATHAAIDDALRARLPQSYSHWPYTGE 14081 N +LG +LE D A+Y G ++DA A L + WP TG Sbjct: 233 NSNTILLGKILEWCD-AEYGA----------GRGIRQIILEDAC-ATLGLDETEWP-TGN 279 Query: 14082 FTEEPW 14099 + P+ Sbjct: 280 YLSPPY 285 >ref|NP_075297.1|gp30 Length = 496 Score = 36.2 bits (82), Expect = 0.18 Identities = 47/183 (25%), Positives = 70/183 (38%), Gaps = 21/183 (11%) Frame = +3 Query: 13527 GMVVGITDRTRTLKIGAYGYANLNSKTRITP---ETLFEIGSVSKSFTAISLMELFDEDR 13697 G +VGI T G+Y A +T+ P E F GS SK L+ D Sbjct: 104 GAMVGIETPT-----GSYYKAYGGDRTKNQPLFLEQNFRYGSCSKMACNTLLLREIDRGH 158 Query: 13698 FDPQEPVAKYLPWFALKSRYRAITGHDLLTHTSGLQNY-------------RPDLASMPF 13838 D + + +++ + IT LL GL+++ P L P Sbjct: 159 VDWDDTLDQFIDGIPNGDK---ITVRYLLLFQDGLKDWLQGDPAVQQTYFLNPTLNYDPL 215 Query: 13839 AALSLRDFEPSYAPGEHYWYSNLGFQVLGYVLEHIDAAKYDTIVQRRIL-----NRLGMS 14003 A + R P + PG YSN ++G +LE DA Y R ++ N +GM Sbjct: 216 AYI--RASTPVFEPGTDSHYSNAATLLMGKILEWCDAEFYTGRSARELIVEEWKNTVGME 273 Query: 14004 ATH 14012 + H Sbjct: 274 SLH 276 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 129,204,335 Number of Sequences: 14420 Number of extensions: 2665860 Number of successful extensions: 9659 Number of sequences better than 0.5: 11 Number of HSP's better than 0.5 without gapping: 5161 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9625 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 13037240143 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig98 (20,318 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_542581.1|hypothetical protein 40 0.009 ref|NP_570332.1|exonuclease 39 0.027 ref|NP_665920.1|unknown 38 0.046 ref|NP_861897.1|gp48 baseplate tail tube cap 37 0.10 ref|NP_938216.1|hypothetical protein 36 0.13 ref|NP_817815.1|gp54 35 0.39 >ref|NP_542581.1|hypothetical protein Length = 311 Score = 40.0 bits (92), Expect = 0.009 Identities = 49/187 (26%), Positives = 73/187 (39%), Gaps = 11/187 (5%) Frame = -1 Query: 16820 GAHAESLDGLQAIAVEIAGGCHGGRAERKYDGRRSGG---EKAVELGSDRLLLVVAVEEG 16650 G H S G+ + V + GG GG G +GG + + + D L V A G Sbjct: 44 GTHTWSNPGVSEVEVLVVGGGGGGGGSPHGAGGGAGGLIHKTSYPVSGDVTLTVGAGGAG 103 Query: 16649 KAGDDG------ARRPIGLRLGKVTREQGEHSAG*MGAFKERVAT-IGQGEFASQRQHRL 16491 GD+G G +T G G GA+ R+++ G + S Sbjct: 104 GEGDNGDWDTSHGHNGEDSTFGDLTAIGG----GGGGAYTSRISSDYGGRDGGSGGGATD 159 Query: 16490 QPAPGIKLGELPDGAHEAGTQGAKLDEPGHGRGDGRIPGR*EGDRRQYGGDPRQ-AELFR 16314 + PG L DG + G+ +++E G G PG +GD + GGD + F Sbjct: 160 ESQPGSALQPATDGGYGHGSIHGRINEYSSGGGGAGEPGDADGDSQ--GGDGMDFSSTFG 217 Query: 16313 DQHGTEG 16293 Q+G G Sbjct: 218 TQYGENG 224 >ref|NP_570332.1|exonuclease Length = 243 Score = 38.5 bits (88), Expect = 0.027 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Frame = +2 Query: 15248 VDQVIICTPDKDLGQSVRGTRVVQLNRRTRVTFDEAAIVAKFGVSPESIPDYL---ALVG 15418 +D ++ +PDKD+ Q R+ L ++ +PE + L L G Sbjct: 125 LDNFVLISPDKDMAQIP--CRIYDLKH-------------EYTQTPEKAHELLYLQCLTG 169 Query: 15419 DAADGYPGLPGWGAKSSAAVLAKFR 15493 D+ DGY G PG G K + A+L K + Sbjct: 170 DSTDGYSGCPGIGPKRALAILGKVK 194 >ref|NP_665920.1|unknown Length = 554 Score = 37.7 bits (86), Expect = 0.046 Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 8/105 (7%) Frame = +2 Query: 17948 DPSLIMFCHEGTWHEV----DRIWTIHADGAGLKKIHTRTMNMEIAGHEFFSSDGAAIWY 18115 DP ++ H G W + DRI H DG LK T T+ IAG E+ S Sbjct: 66 DPYYLLDEHHGLWLDKFDSGDRILLCHRDG--LKT--TITLAYLIAGLEYKSGF------ 115 Query: 18116 DLQTPRGLDFWLAGYQVATGKRT----WYHLDRNEWSVHFNVSPD 18238 RG+ W Q+ GK+ W +DRN W ++ N P+ Sbjct: 116 -----RGI--WAMNNQIQVGKKADTEFWKMVDRNPWLINLNAPPE 153 >ref|NP_861897.1|gp48 baseplate tail tube cap Length = 369 Score = 36.6 bits (83), Expect = 0.10 Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 7/217 (3%) Frame = +3 Query: 9471 NGRQVLAFEISAKVEGVPSRIFGYSHGGASGDVEILGMIPVTQLTENNIADVTEFLNGLE 9650 NG A+ +SA+ G + G +S + ++ LT+N VT+F NGL Sbjct: 63 NGLLFTAYNMSARDSGSLRNLRPAYAGTSSNGI-------ISDLTDNVKDAVTKFSNGL- 114 Query: 9651 MSDKELPSTASREIVPQ-PGNLFVNPKVSIKYDPAKWNQEKVDEAGSSFFTHSGGDAYVK 9827 LP+ A++ + + P + P+ D + ++ G S T GG A Sbjct: 115 -----LPAGANKSTINKTPVANILLPRSKSDVDT---TSHRFNDIGDSLITKGGGTATGV 166 Query: 9828 VLSDRTAPPFDALPEMILTNAQNEDPNAKLVLKEKRKVNGAD------VWFLKLDREVHH 9989 + + + F AL +T D N ++ + GA+ W L R Sbjct: 167 LSNIASTAVFGALDS--ITQGLMADNNEQIYTTSRSMYGGAENRTKVFTWDL-TPRSTED 223 Query: 9990 IPMIVSGYYYTGKSGTVLVMTMTGKNQYSKFEKDFMD 10100 + I++ Y Y TGK+QY++ K ++D Sbjct: 224 LMAIINIYQYF----NYFSYGETGKSQYAQEIKSYLD 256 >ref|NP_938216.1|hypothetical protein Length = 211 Score = 36.2 bits (82), Expect = 0.13 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%) Frame = +2 Query: 13205 RSANAQQTKARASNTGAAVPEVRSEFG------MRLNVAAALPGRQAASGARANP--DRF 13360 R+A + T+ A A +PE+ S+FG +R+ +A +P QA + R++P + Sbjct: 101 RAAMTKHTRYTAFGVTATLPELVSQFGQVTAATVRMRLAKGMPLEQALASVRSDPCGRKI 160 Query: 13361 APIHPAQQSLH 13393 A HP +Q H Sbjct: 161 ADSHPWKQEAH 171 >ref|NP_817815.1|gp54 Length = 920 Score = 34.7 bits (78), Expect = 0.39 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%) Frame = -3 Query: 12894 GRAPEKFGLAMWAAVLAMSLTILPGAWQFKSKYMDSGSIDA-------TPGPKLDKWMAD 12736 G+A + GL A +A +IL G + +D+ ++DA TPGP W + Sbjct: 388 GKAMDSLGLIPSAPTMAADGSILDGKATEREAGVDTANMDAPLWGDVPTPGPAPTDWPTE 447 Query: 12735 QAAKRRAGELA 12703 QAA A E A Sbjct: 448 QAAAAAAAETA 458 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,270,648 Number of Sequences: 14420 Number of extensions: 1912782 Number of successful extensions: 6963 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 4214 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6938 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 9548384782 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig99 (18,456 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_510947.1|similar to phage bIL170 l16 38 0.042 ref|YP_025041.1|putative transposase B 35 0.21 ref|YP_025040.1|putative transposase A 35 0.21 ref|NP_604430.1|Hypothetical protein 35 0.27 ref|NP_958267.1|hypothetical protein 35 0.27 >ref|NP_510947.1|similar to phage bIL170 l16 Length = 989 Score = 37.7 bits (86), Expect = 0.042 Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 6/166 (3%) Frame = -3 Query: 12406 ELLAAVFGRFEGPLEFDELVAIVGYFWGVDDLAPATEKSAREVES------KDVDPGARM 12245 +LL VFG P+ ++A++G F GV T ++ R + K GA Sbjct: 563 QLLMGVFGSISAPIL--AVIAVIGAFIGVLVYLWKTNENFRNTITEAWNGVKTAVSGAIQ 620 Query: 12244 ELRQWLTELWTQIRELPRAQRVALLLNLRAADSAPAVTLFPVTGVASVSNIAETLEFSSE 12065 + WLTELW +I+ Q + +L + + + + + +V NI + Sbjct: 621 GVVGWLTELWGKIQS--TLQPIMPILQVLGQIFMQVLGVLVIGIITNVMNIIQ------- 671 Query: 12064 TFAALWKSLPIEDLAIAELLGVTRQQVINLRKSARERLTRRIGGKY 11927 LW + I AI ++ V Q ++ L + + LT + G + Sbjct: 672 ---GLWTLITIAFQAIGTVISVAVQIIVGLFTALIQLLTGDLSGAW 714 >ref|YP_025041.1|putative transposase B Length = 280 Score = 35.4 bits (80), Expect = 0.21 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = -1 Query: 213 MCESLGISRAGYYRFLDPE--KPAPADMDLRDEMHRVALDW-PCYGSRRIVEEL 61 MC LG+SRA YYR+ P+ K D DL+ + R+ ++ YG +I EL Sbjct: 1 MCRILGVSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHEL 54 >ref|YP_025040.1|putative transposase A Length = 83 Score = 35.4 bits (80), Expect = 0.21 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Frame = -2 Query: 584 MTARRKFTKEFKQAAVSRLQAGQSLSEVARALEVHPADIHRWRRELQEHGERAFQGSGKK 405 MT+R + KEFKQ ++ + G+S +++AR + + +H+W QG K Sbjct: 1 MTSR--YDKEFKQNIINLYKQGESAAQMAREYGIGYSTVHKW-----------IQGQAKT 47 Query: 404 RAEET--RVAELERKVGRQALEIDFLKGAL 321 ++ ++ + +E+++ + E + LK AL Sbjct: 48 QSGKSPDEIKAMEKRLASLSEENEILKKAL 77 >ref|NP_604430.1|Hypothetical protein Length = 101 Score = 35.0 bits (79), Expect = 0.27 Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 10/73 (13%) Frame = +3 Query: 7098 RIRARKKPAGC----------PGRLSGRSGRKPDPQKWPPGQAPPCVRRSPAAARRALMR 7247 ++ R PAG PGR GR R PD +W P VR P AARR +R Sbjct: 19 QVAVRAAPAGSVDCCEYLKTEPGR-PGRGLRSPDATRWGVTSTPAGVRGRP-AARRVSLR 76 Query: 7248 KADAPIHGSLRPG 7286 + +A GS G Sbjct: 77 RLEASYPGSFTRG 89 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 35.0 bits (79), Expect = 0.27 Identities = 53/190 (27%), Positives = 67/190 (35%), Gaps = 2/190 (1%) Frame = -1 Query: 10428 RQPAGLRRSSGERLPGRSDRAVLSPHLAASSDPHRFPPAGDEPCAYRRRAGHPQFPAHRN 10249 R P R R P + + H AA P A + A R RA AH Sbjct: 71 RHPPVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRPRAPECDRGAHHL 130 Query: 10248 QRQCARTHFLRFDLG--YLLGTFLHPPRFSFRRNHPGVRQRACAARRNPRHLPLGPRHHF 10075 + + RT LG + T + R + RR P R+R PR LG H Sbjct: 131 RTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPRRRV-----QPR---LGVGVHR 182 Query: 10074 ACGTRRHRLALRRGAEAIPGRPWRPRQISRPPSDLAYRHTGLLLCRGRHHFWVANRLRRP 9895 G RR +R A PG RPR+ P A R R R + R RR Sbjct: 183 RRGARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRRHRRRASLRPRHRRH 242 Query: 9894 HSRPSGSLPI 9865 S P + P+ Sbjct: 243 RSTPPMNTPL 252 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,916,459 Number of Sequences: 14420 Number of extensions: 1924521 Number of successful extensions: 6708 Number of sequences better than 0.5: 5 Number of HSP's better than 0.5 without gapping: 4121 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6696 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 8658329701 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig100 (22,220 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818403.1|gp105 59 2e-08 ref|NP_542342.1|unknown 38 0.050 ref|NP_523333.1|capsid assembly protein 35 0.33 >ref|NP_818403.1|gp105 Length = 266 Score = 58.9 bits (141), Expect = 2e-08 Identities = 55/217 (25%), Positives = 83/217 (38%), Gaps = 3/217 (1%) Frame = -2 Query: 20143 RLDILYPKEAASGLRPGVIMFHGGGWIRSTKETMMTAFCKPFLEQGFVVANVEYRVXXXX 19964 +LDI P+ + P + GG W + A ++QG++ ++YR Sbjct: 26 KLDIWLPESPENA--PVFMFIPGGAWTIGDRRGQGYAIMSHLVQQGWICVAIDYRTAPKN 83 Query: 19963 XXXXXXXXXXXXAQWFYDRAAQYHVDTRRIVVTGASAGGHLALMVGMT--SKIPIAAIVN 19790 W QY + V GASAGGH+A ++G+T S A+V+ Sbjct: 84 HWPAPFEDVSAAFHWVRANIHQYGGGDF-LAVGGASAGGHMASLLGLTDWSFSKPDAVVS 142 Query: 19789 GYGVTDVADLLGGPHRQGFAAQWLPEQPGRLELAKRMSPMTYVRKGLPPVLTVQGENDHT 19610 YGV D Q + + + SP+ + + PP L +QG+ D Sbjct: 143 LYGVYDWTSKSLDHWLINRYVQHVVVGRRDHDTLRISSPIHQIHRDAPPFLIIQGDCDLV 202 Query: 19609 VPYEQGVRLTAALKEAG-DDAEMMTVPGAGHGFSTEQ 19502 P + LKE + A VPG HGF Q Sbjct: 203 TPQSGAKKFFKKLKETSLNHAVYHRVPGGIHGFDLLQ 239 >ref|NP_542342.1|unknown Length = 164 Score = 37.7 bits (86), Expect = 0.050 Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 14/122 (11%) Frame = +2 Query: 12659 PAHLRSGLAGTNRRMCCRRTGSPYTGSHRWPSLPGPSSPWACRTADAHPRWSA------- 12817 P S L + R C R + S TG S P SP + A+PRWS+ Sbjct: 12 PTTCSSPLPISRTRDCARSSRSAPTGRSAPWSRRSPKSPRPSASRLANPRWSSLARSFPF 71 Query: 12818 --SLFHTSRRLCSRNR-----APPVDSSPPADTAQSADHSIRNCCRPCAAHSRPHRSASK 12976 +TS L R+R AP + + + A+SA S C RPC A+ R RS + Sbjct: 72 SPPTRNTSAALWPRDRSCSSMAPSIRKTAASPIARSAATS---CIRPCFANRR-GRSNDR 127 Query: 12977 NH 12982 +H Sbjct: 128 DH 129 >ref|NP_523333.1|capsid assembly protein Length = 310 Score = 35.0 bits (79), Expect = 0.33 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Frame = -3 Query: 21573 SDGSLAAGIDHGAGSSEAAGHVAVNVL-DFDGSFIDEDADGEREATERHDVDGLSGGPQP 21397 +D AAG+D A + G + V + D + + D D D TE DV+ G P Sbjct: 55 NDDPYAAGVDPFADGEDDEGRIQVRISEDGNEAGFDTDGDNSEVETEGEDVEFEPLGDTP 114 Query: 21396 DHGGEQREGNGQHDD 21352 + + E GQH++ Sbjct: 115 EELSQVTEQLGQHEE 129 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,752,746 Number of Sequences: 14420 Number of extensions: 2250927 Number of successful extensions: 7676 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 4533 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7666 length of database: 3,019,461 effective HSP length: 111 effective length of database: 1,418,841 effective search space used: 10350445095 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig101 (20,184 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_047971.2|gp26 37 0.10 >ref|NP_047971.2|gp26 Length = 174 Score = 36.6 bits (83), Expect = 0.10 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = -2 Query: 17660 ILTGRFRRGERVPSTRELASTLAVARTTVSAAYDQLMAEGYLD 17532 I TGR+ G+++PS R + L + RT + +L+AEG L+ Sbjct: 34 IATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGILE 76 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,579,968 Number of Sequences: 14420 Number of extensions: 2092688 Number of successful extensions: 7341 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 4538 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7329 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 9483888037 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig102 (19,969 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817502.1|gp53 48 3e-05 ref|NP_720278.1|Int 45 2e-04 ref|YP_006360.1|Int 45 2e-04 ref|NP_059584.1|Int 45 2e-04 ref|NP_599058.1|integrase 44 8e-04 ref|NP_878228.1|Int 43 0.001 ref|NP_839878.1|Int 43 0.001 ref|NP_536628.1|Int 43 0.001 ref|NP_046786.1|Int 41 0.005 ref|NP_536807.1|integrase 40 0.007 ref|NP_043466.1|integrase 40 0.007 ref|NP_665963.1|putative site specific recombinase Int2 40 0.009 ref|NP_050999.1|P38 40 0.009 ref|NP_958084.1|gp27 39 0.016 ref|NP_438114.1|integrase-like protein 39 0.027 ref|NP_795541.1|putative integrase 39 0.027 ref|NP_052278.1|Int 39 0.027 ref|NP_037706.1|major tail subunit 39 0.027 ref|NP_795660.1|putative integrase 37 0.10 ref|NP_817384.1|gp46 37 0.10 ref|NP_818167.1|gp94 35 0.23 ref|NP_049793.1|Hoc head outer capsid protein 35 0.23 ref|NP_852723.1|putative integrase 35 0.23 ref|NP_862840.1|gp1 35 0.30 ref|NP_958506.1|putative integrase 35 0.30 >ref|NP_817502.1|gp53 Length = 293 Score = 48.1 bits (113), Expect = 3e-05 Identities = 59/272 (21%), Positives = 107/272 (39%), Gaps = 13/272 (4%) Frame = +2 Query: 18131 VTHLRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDKLGPEHLRQYQAHLFQNKK 18310 + L+ L EL+ + T++ Y V+ + + +L P A + Sbjct: 6 LAELKDSWLMELRAARKSAETIRAYGGSVEGYLNFCVE--GELAPLEKASLLAWVNSMAS 63 Query: 18311 LNASTVQQYAAVLRFFFNKTLKRHYLLDD----IPMPKRHRKLPEILSPDEVALLIGS-A 18475 L +TV ++ F + D + PK +K+ + LS V L+ + A Sbjct: 64 LQPATVHLRLTAVKQFMRWVADEEGVNVDGLLVVRPPKLDQKVVKHLSDRAVQALVATCA 123 Query: 18476 SNLLH----QTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGGHDRDVPLSPRL 18643 N + +++ TG+R AE+ L D+ + +R+GKG R V SP Sbjct: 124 GNTFRDRRDKALIVLFTETGIRAAEMLALDVEDVSLVDCQLTVRRGKGAKGRRVKYSPMC 183 Query: 18644 LETLRVYWRWMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQR----AGITKHVSPH 18811 T+ Y R + + G + W + + ++ + + + +R AG+ PH Sbjct: 184 AATIDKYLRARRRAGHGSEGPL--W---IGLGGRLSYTGMKSSLKRRADDAGV-PGFHPH 237 Query: 18812 TLRHYAGFRTIPGEGSMCG*KARQCWGGARSL 18907 LRH + R + GS G A+ W R + Sbjct: 238 RLRHTSAVRWLKAGGSEAGLMAQAGWQSRRQI 269 >ref|NP_720278.1|Int Length = 387 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/72 (33%), Positives = 37/72 (51%) Frame = +1 Query: 19153 FRGRHRRHCFASHLLEAGTDLRTIQMLLGHAKFEHTAMYLHLSRKHLTAVANPLDAIVVS 19332 FR RH +AS L++AG + +Q + G E Y HL+ HLT A +D+I + Sbjct: 311 FRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDSIFGT 370 Query: 19333 SPDNIKRFRKKQ 19368 S N+ + K+ Sbjct: 371 SVPNMSHSKNKE 382 >ref|YP_006360.1|Int Length = 387 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/72 (33%), Positives = 37/72 (51%) Frame = +1 Query: 19153 FRGRHRRHCFASHLLEAGTDLRTIQMLLGHAKFEHTAMYLHLSRKHLTAVANPLDAIVVS 19332 FR RH +AS L++AG + +Q + G E Y HL+ HLT A +D+I + Sbjct: 311 FRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDSIFGT 370 Query: 19333 SPDNIKRFRKKQ 19368 S N+ + K+ Sbjct: 371 SVPNMSHSKNKE 382 >ref|NP_059584.1|Int Length = 387 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/72 (33%), Positives = 37/72 (51%) Frame = +1 Query: 19153 FRGRHRRHCFASHLLEAGTDLRTIQMLLGHAKFEHTAMYLHLSRKHLTAVANPLDAIVVS 19332 FR RH +AS L++AG + +Q + G E Y HL+ HLT A +D+I + Sbjct: 311 FRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDSIFGT 370 Query: 19333 SPDNIKRFRKKQ 19368 S N+ + K+ Sbjct: 371 SVPNMSHSKNKE 382 >ref|NP_599058.1|integrase Length = 387 Score = 43.5 bits (101), Expect = 8e-04 Identities = 25/72 (34%), Positives = 36/72 (50%) Frame = +1 Query: 19153 FRGRHRRHCFASHLLEAGTDLRTIQMLLGHAKFEHTAMYLHLSRKHLTAVANPLDAIVVS 19332 FR RH +AS L +AG L +Q + G E Y HL+ HLT A +D+I+ Sbjct: 311 FRFHDLRHTWASWLGQAGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDSILNP 370 Query: 19333 SPDNIKRFRKKQ 19368 S N + + K+ Sbjct: 371 SVPNSSQSKNKE 382 >ref|NP_878228.1|Int Length = 326 Score = 42.7 bits (99), Expect = 0.001 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 2/50 (4%) Frame = +1 Query: 19171 RHCFASHLLEAGTDLRTIQMLLGHAKFEHTAMYLHLSRKHL-TAVA-NPL 19314 RH FASH + G ++ +Q +LGHA + T Y HL+ +L AVA NPL Sbjct: 271 RHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAVALNPL 320 >ref|NP_839878.1|Int Length = 326 Score = 42.7 bits (99), Expect = 0.001 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 2/50 (4%) Frame = +1 Query: 19171 RHCFASHLLEAGTDLRTIQMLLGHAKFEHTAMYLHLSRKHL-TAVA-NPL 19314 RH FASH + G ++ +Q +LGHA + T Y HL+ +L AVA NPL Sbjct: 271 RHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAVALNPL 320 >ref|NP_536628.1|Int Length = 345 Score = 42.7 bits (99), Expect = 0.001 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = +1 Query: 19171 RHCFASHLLEAGTDLRTIQMLLGHAKFEHTAMYLHLSRKHLTAVA--NPLD 19317 RH FA+H + D+ +Q +LGH K E T Y H S HL NPL+ Sbjct: 294 RHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQLNPLE 344 >ref|NP_046786.1|Int Length = 337 Score = 40.8 bits (94), Expect = 0.005 Identities = 16/41 (39%), Positives = 26/41 (63%) Frame = +1 Query: 19171 RHCFASHLLEAGTDLRTIQMLLGHAKFEHTAMYLHLSRKHL 19293 RH FA+H + G + T+Q +LGH + E T +Y H + ++L Sbjct: 272 RHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYL 312 >ref|NP_536807.1|integrase Length = 337 Score = 40.4 bits (93), Expect = 0.007 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = +1 Query: 19171 RHCFASHLLEAGTDLRTIQMLLGHAKFEHTAMYLHLSRKHLTAVA--NPL 19314 RH FASH + G ++ ++ +LGH+ E T Y H + HL + NPL Sbjct: 283 RHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAVKFNPL 332 >ref|NP_043466.1|integrase Length = 337 Score = 40.4 bits (93), Expect = 0.007 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = +1 Query: 19171 RHCFASHLLEAGTDLRTIQMLLGHAKFEHTAMYLHLSRKHLTAVA--NPL 19314 RH FASH + G ++ ++ +LGH+ E T Y H + HL + NPL Sbjct: 283 RHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAVKFNPL 332 >ref|NP_665963.1|putative site specific recombinase Int2 Length = 199 Score = 40.0 bits (92), Expect = 0.009 Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 26/162 (16%) Frame = +2 Query: 18437 LSPDEVALLIGSASNLLH----QTMLMTLYSTGVRRAELCRLKSA--DIDSQRMMVHIRQ 18598 L PD+V + + H +L LY TG+RRAEL + A D+D + + + R Sbjct: 10 LKPDQVEAMRAAVLEGSHPERDNAILTLLYDTGLRRAELSGVDRAMLDVDDELLRIPSRI 69 Query: 18599 GKG-GHDRDVPLSP---------RLLETLRVYWRWMKPKTYLFPGTVNNWRADVPITTKV 18748 KG +DRD + R + TL Y LFP ++ ++ K Sbjct: 70 QKGYPNDRDPRPATFELDRGENLRTIATLNAYLEVRDDVDALFPSQMS-----TRMSPKG 124 Query: 18749 PWEACRQAAQRAGI----------TKHVSPHTLRHYAGFRTI 18844 + ++AA+RA I VS HTLRH +R + Sbjct: 125 VNDVVKRAARRADIRPFTFEGRGGPDDVSAHTLRHSLAWRML 166 >ref|NP_050999.1|P38 Length = 390 Score = 40.0 bits (92), Expect = 0.009 Identities = 20/57 (35%), Positives = 29/57 (50%) Frame = +1 Query: 19153 FRGRHRRHCFASHLLEAGTDLRTIQMLLGHAKFEHTAMYLHLSRKHLTAVANPLDAI 19323 FR RH +AS L+++G L +Q + G E Y HL+ HLT A +D + Sbjct: 311 FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESVEMVRRYAHLASNHLTEHAKQIDGV 367 >ref|NP_958084.1|gp27 Length = 349 Score = 39.3 bits (90), Expect = 0.016 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = +1 Query: 19171 RHCFASHLLEAGTDLRTIQMLLGHAKFEHTAMYLHLSRKHL--TAVANPLDAIV 19326 RH F +H + G ++ +Q +LGHA T Y H + HL NPL + Sbjct: 287 RHTFGAHFMMNGGNILVLQKILGHANIRETMKYSHFAPDHLEQAVTLNPLSLAI 340 >ref|NP_438114.1|integrase-like protein Length = 365 Score = 38.5 bits (88), Expect = 0.027 Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = +1 Query: 19171 RHCFASHLLEAGTDLRTIQMLLGHAKFEHTA-MYLHLSRKHLTAVANPLDAIV 19326 RH AS L EAG + Q LGHAK T +Y HLS+K VA+ L +V Sbjct: 311 RHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLSKKSKDNVADKLAELV 363 >ref|NP_795541.1|putative integrase Length = 384 Score = 38.5 bits (88), Expect = 0.027 Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = +1 Query: 19171 RHCFASHLLEAGTDLRTIQMLLGHAKFEHTA-MYLHLSRKHLTAVANPLDAIV 19326 RH AS L EAG + Q LGHAK T +Y HLS+K VA+ L +V Sbjct: 330 RHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLSKKSKDNVADKLAELV 382 >ref|NP_052278.1|Int Length = 336 Score = 38.5 bits (88), Expect = 0.027 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +1 Query: 19171 RHCFASHLLEAGTDLRTIQMLLGHAKFEHTAMYLHLSRKHL--TAVANPL 19314 RH FASH + G ++ +Q +LGH + T Y H + HL NPL Sbjct: 280 RHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDAVKLNPL 329 >ref|NP_037706.1|major tail subunit Length = 234 Score = 38.5 bits (88), Expect = 0.027 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 5/99 (5%) Frame = -1 Query: 1456 LKSTPVTTLITASALSITTVSLPDA---QLGIPYSTVLTANGGAPP--YTWKSVGGRLPA 1292 LK PV S L +TT LP + +G S + A GG PP YTWK G + + Sbjct: 136 LKGKPVPI---DSVLKLTT-DLPSSLSVAVGAAISMAVVAAGGKPPYAYTWKKAGSTV-S 190 Query: 1291 GFSLDPATGTLSGTAQTMNAAFLTFMVTDSSLPAQSATA 1175 G + D TA + +A T +VTDSS P ++ T+ Sbjct: 191 GQTSDTFN---KATAVSGDAGDYTCVVTDSSSPVKTVTS 226 >ref|NP_795660.1|putative integrase Length = 362 Score = 36.6 bits (83), Expect = 0.10 Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +1 Query: 19171 RHCFASHLLEAGTDLRTIQMLLGHAKFEHTA-MYLHLSRKHLTAVANPL 19314 RH AS L EAG + Q LGHAK T +Y HLS+ VA L Sbjct: 308 RHTHASLLFEAGVPAKLAQERLGHAKISITMDLYTHLSKNQTDNVAEKL 356 >ref|NP_817384.1|gp46 Length = 436 Score = 36.6 bits (83), Expect = 0.10 Identities = 24/68 (35%), Positives = 31/68 (45%) Frame = -3 Query: 19160 PRNSRHSMAMGLLQAGVDRAVIALWLGHESVETTQIYLEANLAMKEEILAKTTPLNGKLG 18981 P NSRH+ + L AGVD LGH SV+ +IY A+ A E + + L Sbjct: 369 PHNSRHTTSTLLRAAGVDEQTRMEILGHASVDAQRIYAHADRARHLEAMQGLSELLPSTF 428 Query: 18980 RYRPGDGL 18957 GD L Sbjct: 429 ALETGDRL 436 >ref|NP_818167.1|gp94 Length = 1277 Score = 35.4 bits (80), Expect = 0.23 Identities = 41/162 (25%), Positives = 57/162 (35%), Gaps = 4/162 (2%) Frame = -1 Query: 1708 TTRDLAPVADAGAGREVAAGDSVKLDGSGSWSARGRTLQHSWAILSRPLNSKVALSSSTG 1529 T D A + +GA D+ D S A Q + + A S + Sbjct: 881 TASDFAGTSTSGAT------DATGTDNGTSTPADNAAAQTTTETNKTGRRRRQAAPSGSS 934 Query: 1528 ATP--SFVPDVPGAYVVQLIVTDEGGLKSTPVTTLITASALSITTVSLPDAQLGIPYSTV 1355 ATP S PD G +V + TP + T +S P+ LG P S + Sbjct: 935 ATPAPSTTPDSEG--LVDSMDNPAAPTGGTPASN---------TALSSPNNDLGDPSSAI 983 Query: 1354 LT--ANGGAPPYTWKSVGGRLPAGFSLDPATGTLSGTAQTMN 1235 T + GG P T P GF L T+SG ++ Sbjct: 984 DTGASTGGTPDATGAGTDASTPGGFDLSQFNDTISGIGDAVS 1025 >ref|NP_049793.1|Hoc head outer capsid protein Length = 376 Score = 35.4 bits (80), Expect = 0.23 Identities = 59/286 (20%), Positives = 109/286 (38%), Gaps = 16/286 (5%) Frame = -1 Query: 2203 TVELNGAGSTDVDGDMLTYAWSIVSAPEGSAAALTDPSQVNPKLLMDLPGTYVAQLKVND 2024 T + S G +TYAWS+ + P+ A A P + VA +++ Sbjct: 19 TKQFTATPSGQTGGGTITYAWSVDNVPQDGAEATFSYVLKGPAGQKTI--KVVATNTLSE 76 Query: 2023 GRADSEPVTVTITSGETLRPVAHAGRSQTVAPGAMVRLDGGSTDPQDLPVRLQWALTSRP 1844 G ++ T TIT + A + A G + PV+ AL S+P Sbjct: 77 GGPETAEATTTITVKNKTQTTTLAVTPASPAAGVI-----------GTPVQFTAALASQP 125 Query: 1843 AGSKAA----LDDPR-----SANPFFVADVAGT----YIAQLVAHNGTAHSAAS---TVT 1712 G+ A +DD + ++ + +G +AQ+ A + A S S ++T Sbjct: 126 DGASATYQWYVDDSQVGGETNSTFSYTPTTSGVKRIKCVAQVTATDYDALSVTSNEVSLT 185 Query: 1711 ITTRDLAPVADAGAGREVAAGDSVKLDGSGSWSARGRTLQHSWAILSRPLNSKVALSSST 1532 + + + P +V+ D S +++A + P +++ S Sbjct: 186 VNKKTMNPQVTL-----TPPSINVQQDASATFTAN---------VTGAPEEAQITYSWKK 231 Query: 1531 GATPSFVPDVPGAYVVQLIVTDEGGLKSTPVTTLITASALSITTVS 1394 ++P V G+ V + T G ++ VT +TA+ + TV+ Sbjct: 232 DSSP-----VEGSTNVYTVDTSSVGSQTIEVTATVTAADYNPVTVT 272 >ref|NP_852723.1|putative integrase Length = 348 Score = 35.4 bits (80), Expect = 0.23 Identities = 20/52 (38%), Positives = 28/52 (53%) Frame = +1 Query: 19153 FRGRHRRHCFASHLLEAGTDLRTIQMLLGHAKFEHTAMYLHLSRKHLTAVAN 19308 FR RH +A+ + +GT L +Q L G +K + Y HLS +HL AN Sbjct: 276 FRFHDLRHTWATRHIMSGTPLYVLQELGGWSKSDTVRKYAHLSVEHLQNHAN 327 >ref|NP_862840.1|gp1 Length = 375 Score = 35.0 bits (79), Expect = 0.30 Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 28/192 (14%) Frame = +2 Query: 18332 QYAAVLRFFFNKTL--KRHYLLDDIPMPKRHRKLPEILSPDEVALLIGSASNLLHQT--- 18496 QY+ + N T+ K+ L+DI +K + L+ E+ LI + +N +Q Sbjct: 145 QYSYIENNEVNYTVIPKKPETLEDI-----EKKRNKFLTMQEIKALIDALNNKPYQQKYA 199 Query: 18497 -MLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGGHD-----RDVPLSPRLLETLR 18658 M+ L TG+R EL L+ +ID + + I G D + +P + + + T+ Sbjct: 200 DMVTVLALTGMRYGELTALQLKNIDFENNKIEIT---GNFDSINKIKTLPKTAKSIRTIL 256 Query: 18659 VY-----------------WRWMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAG 18787 V ++ +K Y+F + W + PIT + ++ +AG Sbjct: 257 VSDAVIKAIQRQVVRLTERYQPLKDDDYIF--CLEVWNS--PITLPSFIQIIKKYGAKAG 312 Query: 18788 ITKHVSPHTLRH 18823 I K++S H RH Sbjct: 313 IEKNLSSHIFRH 324 >ref|NP_958506.1|putative integrase Length = 391 Score = 35.0 bits (79), Expect = 0.30 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = +1 Query: 19171 RHCFASHLL-EAGTDLRTIQMLLGHAKFEHTA-MYLHLSRKHLTAVANPL 19314 RH FA+ L+ E +T+QMLLGH + T +Y H+++K+ N L Sbjct: 337 RHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHINKKNTEDAVNAL 386 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,159,913 Number of Sequences: 14420 Number of extensions: 2090096 Number of successful extensions: 7300 Number of sequences better than 0.5: 25 Number of HSP's better than 0.5 without gapping: 4276 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7276 length of database: 3,019,461 effective HSP length: 110 effective length of database: 1,433,261 effective search space used: 9380693245 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig103 (26,393 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_046572.1|ABC transporter 52 2e-06 ref|NP_958267.1|hypothetical protein 35 0.29 >ref|NP_046572.1|ABC transporter Length = 705 Score = 52.4 bits (124), Expect = 2e-06 Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 5/211 (2%) Frame = -2 Query: 24364 RRVVDDVTVFVQQGEVVGLLGPNGAGKTTSFYMIVGLISPDSGRILVDDKDITDLPMYQR 24185 R +V+D+ + + + + V ++G +G GK+T + L I ++ DI + Sbjct: 496 RYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYD-HLS 554 Query: 24184 ARKGISYLPQEASVFRKLTVEENLLA--ILETLPLRARERRENMERLIDQLGLEKVRR-- 24017 RK I Y+ + +F K T++ENL I + + I L + + Sbjct: 555 IRKRIVYIDENPFLF-KGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLS 613 Query: 24016 SRGYMLSGGERRRVEIARSLVINPSFLLLDEPFSGIDPIQVLELQSIIFD-LKRAGIGIL 23840 G LS G+++R+ +AR+++ P L+LDE S IDP + +I++ L R I+ Sbjct: 614 ENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDP----DNTKLIYETLHRMDCLII 669 Query: 23839 VTDHNVSATLVVTDRAYILDNGRIFRAGSPE 23747 + HN + ++ + N RI + E Sbjct: 670 LITHNDPSNFKY-NKKLVFRNNRIIESSYSE 699 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 35.4 bits (80), Expect = 0.29 Identities = 32/83 (38%), Positives = 34/83 (40%) Frame = -3 Query: 21498 AGPLRPGAHCGGKLEHSRSRPERPHPSDRGNERHFLSRRRGAQIRSGVESPRR*TAFLVP 21319 A PL PGA +E R R P R R Q R GV RR A V Sbjct: 141 AVPLGPGARVRTPVEDRRRTRRRRRPDPR----------RRVQPRLGVGVHRRRGARRVG 190 Query: 21318 ARQEPFRPVRNRPGPGSAIRPHR 21250 R VR RPGPG+A RP R Sbjct: 191 RRVR----VRARPGPGAARRPRR 209 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 130,910,643 Number of Sequences: 14420 Number of extensions: 2816349 Number of successful extensions: 9536 Number of sequences better than 0.5: 2 Number of HSP's better than 0.5 without gapping: 5236 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9525 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 12197396385 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig104 (23,366 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done ***** No hits found ****** Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 112,704,201 Number of Sequences: 14420 Number of extensions: 2391296 Number of successful extensions: 8477 Number of sequences better than 0.5: 0 Number of HSP's better than 0.5 without gapping: 4781 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8463 length of database: 3,019,461 effective HSP length: 111 effective length of database: 1,418,841 effective search space used: 10892442357 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig105 (32,185 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_052116.1|internal virion protein D 53 2e-06 ref|NP_046584.1|putative transglycosylase 52 3e-06 ref|YP_164061.1|endolysin 49 3e-05 ref|YP_024695.1|gp22 47 1e-04 ref|NP_848303.1|internal virion protein 42 0.004 ref|NP_523341.1|internal virion protein D 42 0.004 ref|NP_042004.1|internal virion protein D 40 0.011 ref|NP_040700.1|hypothetical protein 40 0.011 ref|NP_040602.1|Tail fiber protein 35 0.36 ref|NP_958680.1|Bbp11 35 0.46 ref|NP_996573.1|hypothetical protein predicted by GeneMark 35 0.46 ref|NP_996621.1|hypothetical protein predicted by GeneMark 35 0.46 >ref|NP_052116.1|internal virion protein D Length = 1320 Score = 53.1 bits (126), Expect = 2e-06 Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 5/149 (3%) Frame = -3 Query: 10883 LFRKYGDKYQFPYLLLAAQGYQESGLNPRLRSRAGAVGVMQIKPSTAAADPIDITGIEKI 10704 LF+K DK+ Y LL + ES NP+ +S G G+MQ TA A + +T + Sbjct: 14 LFQKAADKHGVSYDLLRKLAFNESSFNPKAKSPTGPKGLMQFTKGTATALGLKVTDADDD 73 Query: 10703 DR-----NIEAGAKYLRHMVSHYYAKEPMDQITRGLFALASYNAGPDRIERLRSVAAAEG 10539 DR ++A A++L ++ Y E L A +YN G R + Sbjct: 74 DRYNPELAVDAAARHLSDLIRKYDGDE--------LKAALAYNQGEGR----NGAPQMQA 121 Query: 10538 YDPNLWFNNVEFIAARRIGAETTNYVSNV 10452 YD W + I E NY+ N+ Sbjct: 122 YDKGDWAS---------ISEEGRNYMRNL 141 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 52.4 bits (124), Expect = 3e-06 Identities = 33/97 (34%), Positives = 48/97 (49%) Frame = -3 Query: 10862 KYQFPYLLLAAQGYQESGLNPRLRSRAGAVGVMQIKPSTAAADPIDITGIEKIDRNIEAG 10683 KY L+AA QESG N + RS GA+G+MQ+ P+TA + + + +N+ G Sbjct: 1432 KYNVDPALIAAVIQQESGFNAKARSGVGAMGLMQLMPATAKS--LGVNNAYDPYQNVMGG 1489 Query: 10682 AKYLRHMVSHYYAKEPMDQITRGLFALASYNAGPDRI 10572 KYL + + ALA+YNAGP + Sbjct: 1490 TKYLAQQLEKFGGNVEK--------ALAAYNAGPGNV 1518 >ref|YP_164061.1|endolysin Length = 264 Score = 48.9 bits (115), Expect = 3e-05 Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 10/139 (7%) Frame = -3 Query: 10850 PYLLLAAQGYQESGLNPRLRSRAGAVGVMQIKPSTAAADPIDITGI--EKIDRNIEAGAK 10677 P AQ +QES RS GA G+ Q P TA I G+ + N Sbjct: 104 PIATFGAQVHQESRWRADARSPVGAQGLAQFMPGTAEW----IAGLYPAALGTNQPFNPG 159 Query: 10676 Y-LRHMVSH----YYAKEPMDQITRGLFALASYNAGPDRIERLRSVAAAEGYDPNLWFNN 10512 + LR +V++ Y + + R F L++YN G + R R +A+A G D WF++ Sbjct: 160 WALRALVTYDRWLYDRNQASSECDRWAFVLSAYNGGQGWVNRDRKLASASGADQLAWFDS 219 Query: 10511 VEFIAARRIGA---ETTNY 10464 VE A R A E NY Sbjct: 220 VERFNAGRSAANFRENRNY 238 >ref|YP_024695.1|gp22 Length = 203 Score = 47.0 bits (110), Expect = 1e-04 Identities = 49/160 (30%), Positives = 69/160 (43%), Gaps = 7/160 (4%) Frame = -3 Query: 10925 IAGEDLAHFEEMVRLFRKYGDKYQFPYLLLAAQGYQESGLNPRLRSRAGAVGVMQIKPST 10746 + E LA+ E+ R R P AAQ +QES S GA G+ Q PST Sbjct: 22 VPAEALAYRAELTRNARAVWGM-DAPVSSFAAQIHQESRWRADAVSVVGARGMSQFMPST 80 Query: 10745 ----AAADPIDITGIEKIDRN--IEAGAKYLRHMVSHYYAKEPMDQITRGLFALASYNAG 10584 A A P ++ + + + I A +Y RH+ A +++ L++YN G Sbjct: 81 VDWIAGAYPAELGEAQPFNPSWSIRALVRYDRHLWERITAAGACERMA---MTLSAYNGG 137 Query: 10583 PDRIERLRSVAAAEGYDPNLWFNNVE-FIAARRIGAETTN 10467 + R + V AA G D WF +VE F A R A N Sbjct: 138 LGWVYRDQRVTAAGGADRQRWFGHVERFNAGRHAAAFREN 177 >ref|NP_848303.1|internal virion protein Length = 1318 Score = 42.0 bits (97), Expect = 0.004 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 5/120 (4%) Frame = -3 Query: 10883 LFRKYGDKYQFPYLLLAAQGYQESGLNPRLRSRAGAVGVMQIKPSTAAADPIDITGIEKI 10704 LF+K D Y LL + ES P +S+ G +G+MQ +TA A + +T Sbjct: 15 LFQKAADANGVSYDLLRKVAWTESRFVPTAKSKTGPLGIMQFTKATANALGLRVTDGPDD 74 Query: 10703 DR-----NIEAGAKYLRHMVSHYYAKEPMDQITRGLFALASYNAGPDRIERLRSVAAAEG 10539 DR I A AK+L +V + E L A +YN G R+ + A ++G Sbjct: 75 DRLNPELAINAAAKHLAGLVGKFDGDE--------LKAALAYNQGEGRLGNPQLEAYSKG 126 >ref|NP_523341.1|internal virion protein D Length = 1318 Score = 42.0 bits (97), Expect = 0.004 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 5/120 (4%) Frame = -3 Query: 10883 LFRKYGDKYQFPYLLLAAQGYQESGLNPRLRSRAGAVGVMQIKPSTAAADPIDITGIEKI 10704 LF+K D Y LL + ES P +S+ G +G+MQ +TA A + +T Sbjct: 15 LFQKEADANGVSYDLLRKVAWTESRFVPTAKSKTGPLGIMQFTKATANALGLRVTDGPDD 74 Query: 10703 DR-----NIEAGAKYLRHMVSHYYAKEPMDQITRGLFALASYNAGPDRIERLRSVAAAEG 10539 DR I A AK+L +V + E L A +YN G R+ + A ++G Sbjct: 75 DRLNPELAINAAAKHLAGLVGKFDGDE--------LKAALAYNQGEGRLGNPQLEAYSKG 126 >ref|NP_042004.1|internal virion protein D Length = 1318 Score = 40.4 bits (93), Expect = 0.011 Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 5/120 (4%) Frame = -3 Query: 10883 LFRKYGDKYQFPYLLLAAQGYQESGLNPRLRSRAGAVGVMQIKPSTAAADPIDITGIEKI 10704 LF+K D Y LL + ES P +S+ G +G+MQ +TA A + +T Sbjct: 15 LFQKAADANGVSYDLLRKVAWTESRFVPTAKSKTGPLGMMQFTKATAKALGLRVTDGPDD 74 Query: 10703 DR-----NIEAGAKYLRHMVSHYYAKEPMDQITRGLFALASYNAGPDRIERLRSVAAAEG 10539 DR I A AK L +V + E L A +YN G R+ + A ++G Sbjct: 75 DRLNPELAINAAAKQLAGLVGKFDGDE--------LKAALAYNQGEGRLGNPQLEAYSKG 126 >ref|NP_040700.1|hypothetical protein Length = 265 Score = 40.4 bits (93), Expect = 0.011 Identities = 25/71 (35%), Positives = 36/71 (50%) Frame = -3 Query: 10862 KYQFPYLLLAAQGYQESGLNPRLRSRAGAVGVMQIKPSTAAADPIDITGIEKIDRNIEAG 10683 +Y L+A ES NPR S GA+G+MQ+ P+TA + + +T +NI G Sbjct: 17 QYNLDPRLVAGVVQTESSGNPRTTSGVGAMGLMQLMPATAKS--LGVTNAYDPTQNIYGG 74 Query: 10682 AKYLRHMVSHY 10650 A LR + Y Sbjct: 75 AALLRENLDRY 85 >ref|NP_040602.1|Tail fiber protein Length = 401 Score = 35.4 bits (80), Expect = 0.36 Identities = 43/194 (22%), Positives = 65/194 (33%), Gaps = 2/194 (1%) Frame = -3 Query: 6782 SKPQATGQRPWRATSHWTAAGVEPSARRMPHSRVRWQTTNATTPITPALARSSAITAKPP 6603 S +A + A AA +A + TNA A +S K Sbjct: 171 SGAEAASAKATEAEKSAAAAESSKNAAATSAGAAKTSETNAAASQQSAATSASTAATKAS 230 Query: 6602 SSTEPQRGAEVARHARSSSECN--SKIGRVESSSRTMARISRTGRGAPAAMRTIAISRVE 6429 + R A ++ A SSE N S GR SS+ +R + + Sbjct: 231 EAATSARDAVASKEAAKSSETNASSSAGRAASSATAAENSARAAKTSET----------- 279 Query: 6428 ADWE*G*NTRGRSCAPSRRLRASLTRPTISIGSCATPSSRILRPSTGPSGITARAKASLT 6249 N R A R A+ T + GS +T S++ +T +G A S + Sbjct: 280 -------NARSSETAAERSASAAADAKTAAAGSASTASTK----ATEAAGSAVSASQSKS 328 Query: 6248 MATSGARSVSCSSK 6207 A + A S+K Sbjct: 329 AAEAAAIRAKNSAK 342 >ref|NP_958680.1|Bbp11 Length = 720 Score = 35.0 bits (79), Expect = 0.46 Identities = 24/76 (31%), Positives = 36/76 (47%) Frame = -3 Query: 10796 LRSRAGAVGVMQIKPSTAAADPIDITGIEKIDRNIEAGAKYLRHMVSHYYAKEPMDQITR 10617 L S GAVG+ Q+ P T A + + G+ + A Y R + Y+ K+ D Sbjct: 324 LTSPKGAVGIAQVMPDT-APEAAKLAGLPWDENRYRNDAAYNRALGMAYFQKQLRDFGGD 382 Query: 10616 GLFALASYNAGPDRIE 10569 A A+YNAGP ++ Sbjct: 383 LPKAYAAYNAGPGALQ 398 >ref|NP_996573.1|hypothetical protein predicted by GeneMark Length = 720 Score = 35.0 bits (79), Expect = 0.46 Identities = 24/76 (31%), Positives = 36/76 (47%) Frame = -3 Query: 10796 LRSRAGAVGVMQIKPSTAAADPIDITGIEKIDRNIEAGAKYLRHMVSHYYAKEPMDQITR 10617 L S GAVG+ Q+ P T A + + G+ + A Y R + Y+ K+ D Sbjct: 324 LTSPKGAVGIAQVMPDT-APEAAKLAGLPWDENRYRNDAAYNRALGMAYFQKQLRDFGGD 382 Query: 10616 GLFALASYNAGPDRIE 10569 A A+YNAGP ++ Sbjct: 383 LPKAYAAYNAGPGALQ 398 >ref|NP_996621.1|hypothetical protein predicted by GeneMark Length = 720 Score = 35.0 bits (79), Expect = 0.46 Identities = 24/76 (31%), Positives = 36/76 (47%) Frame = -3 Query: 10796 LRSRAGAVGVMQIKPSTAAADPIDITGIEKIDRNIEAGAKYLRHMVSHYYAKEPMDQITR 10617 L S GAVG+ Q+ P T A + + G+ + A Y R + Y+ K+ D Sbjct: 324 LTSPKGAVGIAQVMPDT-APEAAKLAGLPWDENRYRNDAAYNRALGMAYFQKQLRDFGGD 382 Query: 10616 GLFALASYNAGPDRIE 10569 A A+YNAGP ++ Sbjct: 383 LPKAYAAYNAGPGALQ 398 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 152,310,093 Number of Sequences: 14420 Number of extensions: 3167495 Number of successful extensions: 11311 Number of sequences better than 0.5: 12 Number of HSP's better than 0.5 without gapping: 5758 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11292 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 14753470614 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig106 (34,013 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_803640.1|ORF074 45 4e-04 ref|NP_542287.1|unknown 37 0.098 ref|NP_720329.1|5 37 0.098 ref|YP_006408.1|Gp5 37 0.098 ref|NP_059630.1|coat protein 37 0.098 ref|NP_490619.1|hypothetical protein 37 0.098 ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase 37 0.13 ref|NP_064745.1|gp7 36 0.22 ref|NP_795701.1|hypothetical protein 35 0.49 ref|NP_795418.1|hypothetical protein 35 0.49 >ref|NP_803640.1|ORF074 Length = 677 Score = 45.4 bits (106), Expect = 4e-04 Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 4/205 (1%) Frame = +2 Query: 7397 QQIRQLSGMRGLMAKPSGEIIETPITANFREGL-NVLQYFISTHGARKGLADTALKTADS 7573 +Q+ Q RG + +I + P+T + +G+ N+ + I + K L + Sbjct: 207 EQLLQAFAWRGFPTDINSDIFKYPVTTGYIDGIWNLYENMIESRSGTKALLYNKELLRVT 266 Query: 7574 GYLTRRLVDVAQDVI-ISENDCGTTEGIYVEPIIESGEIIEALRDRIVGRVALEDQKDYE 7750 Y R+ +AQ V + DC TT L + V ++ L K ++ Sbjct: 267 EYFNRKSQLIAQYVQRLHPGDCKTT----------------ILAEYPVTKLTL---KAFK 307 Query: 7751 GNVIVGVNQEITEDLAAAIQAAGIERVKIRSVLTCE--SKRGVCVACYGRNLATGRLVER 7924 G + ++ G ++ K RSV C +G+C+ CYGR G + + Sbjct: 308 GKYYQKEDGKLDWIRGNETHLIGTKQ-KFRSVFGCNHPDSQGICMTCYGR---LGINIPK 363 Query: 7925 GEAVGVIAAQSIGEPGTQLTMRTFH 7999 G +G +AA S+G+ T + T H Sbjct: 364 GTNIGQVAAVSMGDKITSAVLSTKH 388 >ref|NP_542287.1|unknown Length = 224 Score = 37.4 bits (85), Expect = 0.098 Identities = 38/115 (33%), Positives = 47/115 (40%), Gaps = 14/115 (12%) Frame = +1 Query: 27190 PGRRAVTAFRKAPVANWSREWPRRTWPISWARK---KDISSRSPAQRSTSGAVMKTNPPG 27360 P RR + R A + R W R WP S +R+ K S+R PAQRS+ K P Sbjct: 39 PERRCASPTRSAASPTF-RRWTRSAWPTSRSRRLRSKISSARGPAQRSS-----KRRLPS 92 Query: 27361 SAKALAVGAGSAVKRNWRRESL-TAAVSRAPTAAT----------ISCCGAATRP 27492 A A S R+ +SL TA R P A T + CG RP Sbjct: 93 IAAWSKHSARSQRARSLPSKSLATAPQHRIPLARTRDPIRLLPALMGACGRRARP 147 >ref|NP_720329.1|5 Length = 430 Score = 37.4 bits (85), Expect = 0.098 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +1 Query: 15625 GVFSMEGDIADLQGILKLAKPYGARTYVDEAHGIGVLGET 15744 G+F+ +GDI+ L G+ ++A YG EA G+G+ G+T Sbjct: 390 GIFATQGDISTLSGLCRIALWYGVNATRPEAIGVGLPGQT 429 >ref|YP_006408.1|Gp5 Length = 430 Score = 37.4 bits (85), Expect = 0.098 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +1 Query: 15625 GVFSMEGDIADLQGILKLAKPYGARTYVDEAHGIGVLGET 15744 G+F+ +GDI+ L G+ ++A YG EA G+G+ G+T Sbjct: 390 GIFATQGDISTLSGLCRIALWYGVNATRPEAIGVGLPGQT 429 >ref|NP_059630.1|coat protein Length = 430 Score = 37.4 bits (85), Expect = 0.098 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +1 Query: 15625 GVFSMEGDIADLQGILKLAKPYGARTYVDEAHGIGVLGET 15744 G+F+ +GDI+ L G+ ++A YG EA G+G+ G+T Sbjct: 390 GIFATQGDISTLSGLCRIALWYGVNATRPEAIGVGLPGQT 429 >ref|NP_490619.1|hypothetical protein Length = 762 Score = 37.4 bits (85), Expect = 0.098 Identities = 23/82 (28%), Positives = 45/82 (54%) Frame = -1 Query: 2021 LTASLRIVAAITVPTSSRSGKKISNSVIPASISLLITVVVNSLLASIMTSPVVMSTTSAT 1842 +T +L A+T PT+++ + + ++PASI+ N+ AS + +P+ +S + Sbjct: 226 ITDALHASEAVTTPTANKLLRLNAAGLLPASIT------GNAATASRLAAPITLSASGDA 279 Query: 1841 TWAPSRSLGATSTFSILAFCSS 1776 TW+ +R GAT+ +L +S Sbjct: 280 TWS-ARFDGATNVNGVLTLANS 300 >ref|YP_077258.1|Nucleoside-diphosphate-sugar epimerase Length = 320 Score = 37.0 bits (84), Expect = 0.13 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 6/162 (3%) Frame = +2 Query: 12086 MILVTGGTGFIGTHLLERLVATNAPVRALVRPTKAPRTLPIGVETVYGDLATGVGITAAL 12265 MIL+TG TGFIG+ LL+RL + V + + + E V+ DL + L Sbjct: 1 MILITGCTGFIGSQLLKRL-NNDKVVCVANKDHFSNNIVDSAAEYVFVDLTDREKVRDLL 59 Query: 12266 EGV--ETVIHLAGIT--KALHTDDYYSGNVRATEKLAHAMAGRGMRMVHVSSLAAIGPAS 12433 V + VI+LA T + + D + N +A A A ++H S+ A + P + Sbjct: 60 RKVKPDLVINLASKTPVRLSYEDTSFMNNAIIAYNIAMAEA----PLIHAST-AEVYPYT 114 Query: 12434 DGLPVKEDAEPH--PLTHYGKSKLDAEGVVRDLAPDAVIVRP 12553 ++ E + P + Y SK+ +E ++ +I+RP Sbjct: 115 PYPHYYKEEEVYRTPTSPYAVSKIASEMLLAGRKEKTIILRP 156 >ref|NP_064745.1|gp7 Length = 540 Score = 36.2 bits (82), Expect = 0.22 Identities = 32/153 (20%), Positives = 60/153 (39%) Frame = -2 Query: 33100 SASSPADCAVTIATSGKPQSSSIRASAPSTVALRTWPVSRLRALDTPASRVIATSSA*MQ 32921 +A A A T AT+ ++ ASA ++ T + T AS + Sbjct: 107 AAGLSATAAATSATNAGASETAASASATASATSATNSATSASQAATSASAAAVSEGNAAT 166 Query: 32920 AYTCPLSPESTHCNRASPTRSVSRPASCPTTSAGSTFSTPTDSATCKSAGRRKTSRTGPD 32741 + T + ++ AS + + AS T+A ++ S SAT +A + + + + Sbjct: 167 SETNAANSATSASGSASTATTQASAASVSATNAATSASNAATSATNAAASQAAAATSETN 226 Query: 32740 CRMRPSTITAIQSPSATASIRSCVTTMLGTPPA 32642 ST+T + +AT+ + + T A Sbjct: 227 AAASESTVTTSATNAATSEANAATSASTATTQA 259 >ref|NP_795701.1|hypothetical protein Length = 671 Score = 35.0 bits (79), Expect = 0.49 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Frame = +1 Query: 28999 SNFGQTILGEAVHAAVNSTAQQLEAKAGTMPVKVVTIDGLVADAAPDGTL------IINV 29160 +++G TI G+ + N+T GT K+ + AD GTL IIN+ Sbjct: 411 NSYGVTIAGKHIALDGNTTVN------GTFTTKIAEAIKIRADQIIAGTLDASKARIINL 464 Query: 29161 GSSSGVKVGDRYAVKRVGRKITDPATGKVLRSIEDAIGEIAITEVDASSAVGKFTGS 29331 +SS V + + ++G I D GKV+++ A+ +D SSA F + Sbjct: 465 NASSIVGLDANFIKAKIGYAIVDMLEGKVIKARNSAM------LIDLSSAKMDFNSN 515 >ref|NP_795418.1|hypothetical protein Length = 634 Score = 35.0 bits (79), Expect = 0.49 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Frame = +1 Query: 28999 SNFGQTILGEAVHAAVNSTAQQLEAKAGTMPVKVVTIDGLVADAAPDGTL------IINV 29160 +++G TI G+ + N+T GT K+ + AD GTL IIN+ Sbjct: 374 NSYGVTIAGKHIALDGNTTVN------GTFTTKIAEAIKIRADQIIAGTLDASKARIINL 427 Query: 29161 GSSSGVKVGDRYAVKRVGRKITDPATGKVLRSIEDAIGEIAITEVDASSAVGKFTGS 29331 +SS V + + ++G I D GKV+++ A+ +D SSA F + Sbjct: 428 NASSIVGLDANFIKAKIGYAIVDMLEGKVIKARNSAM------LIDLSSAKMDFNSN 478 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 163,184,009 Number of Sequences: 14420 Number of extensions: 3437806 Number of successful extensions: 12299 Number of sequences better than 0.5: 10 Number of HSP's better than 0.5 without gapping: 6129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12281 length of database: 3,019,461 effective HSP length: 114 effective length of database: 1,375,581 effective search space used: 15438145563 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig107 (29,072 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_025041.1|putative transposase B 83 1e-15 ref|NP_859396.1|hypothetical protein 72 4e-12 ref|NP_958229.1|gene 55 protein 67 8e-11 ref|NP_899326.1|gp44 67 1e-10 ref|NP_536395.1|ISBt3 transposase subunit protein 61 5e-09 ref|NP_612994.1|hypothetical protein 47 1e-04 ref|NP_049482.1|serine 47 1e-04 ref|YP_195157.1|sliding clamp loader gp44 46 2e-04 ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase access... 45 4e-04 ref|NP_943898.1|gp44 clamp loader subunit 42 0.003 ref|NP_049665.1|gp44 clamp loader subunit, DNA polymerase access... 40 0.013 ref|NP_932394.1|DNA polymerase accessory protein 39 0.022 ref|NP_891600.1|Gp44 39 0.038 ref|YP_195210.1|virion structural protein 37 0.084 ref|YP_164321.1|hypothetical protein 36 0.25 ref|NP_859295.1|hypothetical protein 35 0.32 ref|NP_612929.1|hypothetical protein 35 0.32 ref|NP_859129.1|hypothetical protein 35 0.32 ref|NP_050570.1|hypothetical protein 35 0.32 ref|NP_049532.1|hypothetical protein 35 0.32 >ref|YP_025041.1|putative transposase B Length = 280 Score = 83.2 bits (204), Expect = 1e-15 Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 1/118 (0%) Frame = +2 Query: 29 KLRSSLTLNALRMALGQRSVSPGLVHHSDRGVQYASHDYTQLLQDNGIEISMSRKANPWD 208 K+ + L L L A+ R+++ L+ H+D G QY S DY Q L + I S SRK P+D Sbjct: 153 KMDTDLVLKTLESAVKNRTITGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYD 212 Query: 209 NAACESFMKTLKYEEVHRTE-YRNLAHARASIKTFLEKIYNQKRLHSSLSYRSPVEFE 379 NA ESF +LK E V+ + + A A + ++ YN+KR+HSSL Y++P++ E Sbjct: 213 NAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQVE 270 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 71.6 bits (174), Expect = 4e-12 Identities = 42/121 (34%), Positives = 63/121 (52%) Frame = +2 Query: 17 RTWGKLRSSLTLNALRMALGQRSVSPGLVHHSDRGVQYASHDYTQLLQDNGIEISMSRKA 196 R + ++ L+AL AL R S G +HHSD+G QY S YT+ L++ G+ S Sbjct: 164 RVSSSMETTFVLDALEQALWARRPS-GTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTG 222 Query: 197 NPWDNAACESFMKTLKYEEVHRTEYRNLAHARASIKTFLEKIYNQKRLHSSLSYRSPVEF 376 + +DNA ES K E +HR ++N A + T+++ YN +RL L + P E Sbjct: 223 DSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVD-WYNNRRLLGRLGHTPPAEA 281 Query: 377 E 379 E Sbjct: 282 E 282 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 67.4 bits (163), Expect = 8e-11 Identities = 41/115 (35%), Positives = 58/115 (50%) Frame = +2 Query: 38 SSLTLNALRMALGQRSVSPGLVHHSDRGVQYASHDYTQLLQDNGIEISMSRKANPWDNAA 217 S LT+ AL MA R G++ HSD+G Y S + QLL I SMSR+ N WDN+ Sbjct: 179 SRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSP 238 Query: 218 CESFMKTLKYEEVHRTEYRNLAHARASIKTFLEKIYNQKRLHSSLSYRSPVEFEH 382 E F ++LK E + Y + + A +I ++ Y+ R H P E E+ Sbjct: 239 MERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESEN 293 >ref|NP_899326.1|gp44 Length = 318 Score = 66.6 bits (161), Expect = 1e-10 Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 10/199 (5%) Frame = +3 Query: 9510 RKYRPQSFADVICQEHVKTTLENAIAQHRIAHGYIFSGQRGTGKTTIARILARCLNCVQG 9689 +KYRPQS D + E V+ + + ++I + + S GTGKTT+AR + + Sbjct: 14 QKYRPQSIKDCVLPERVRKLFQKMVDDNQIPNMLLCSSSPGTGKTTVARAVLADMG---- 69 Query: 9690 PTATPCGVCASCKEISEGGTVDVIEIDAASNRGI----NEMRELRENVRYQPARDRYKIF 9857 +V+ ++A+S+RGI N++ V + K Sbjct: 70 --------------------YEVLFVNASSSRGIGLVQNDLPAFCSTVSFS---GNPKAV 106 Query: 9858 IIDEAHQITNEAFNALLKTIEEPPEWAVFVLCTTESHKIPATIASRCQHFSF------RS 10019 I+DEA +T +A AL IE+ + FVL + KI I SR Q F F + Sbjct: 107 ILDEADNLTPDAQKALRGLIEQYSKNVRFVLTCNYAQKILTPIRSRLQEFEFVYNKEEQL 166 Query: 10020 VDFQELVDRMSWICGQEGI 10076 ++++ R IC QEG+ Sbjct: 167 SCVKQMIVRSMQICKQEGV 185 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 61.2 bits (147), Expect = 5e-09 Identities = 47/128 (36%), Positives = 63/128 (49%), Gaps = 7/128 (5%) Frame = +2 Query: 17 RTWGKLRSSLTLNALRMALGQRSVSPG----LVHHSDRGVQYASHDYTQLLQDNGIEISM 184 R + + L+AL AL R PG L+HHSDRG QY S Y++ L + GIE S+ Sbjct: 145 RVSSSMTTDFVLDALEQALYARQ--PGEDGTLIHHSDRGSQYVSIRYSERLAEAGIEPSV 202 Query: 185 SRKANPWDNAACESFMKTLKYEEVHRTEYRNLAHARASIK-TFLEKI--YNQKRLHSSLS 355 + + +DNA E+ K E +HR R R S++ LE + YN RL L Sbjct: 203 GSRGDSYDNALAETINGLYKTELIHR---RAPWKTRESVELATLEWVAWYNHHRLMEPLG 259 Query: 356 YRSPVEFE 379 Y P E E Sbjct: 260 YIPPAEAE 267 >ref|NP_612994.1|hypothetical protein Length = 348 Score = 46.6 bits (109), Expect = 1e-04 Identities = 57/255 (22%), Positives = 101/255 (39%), Gaps = 23/255 (9%) Frame = +1 Query: 20278 GGMGEVWKARDTRLKRTVAIK-VSKSNFINRAEH--EARAVAALSHPNICMLYDIGPD-- 20442 G +V+ A D L + IK + K N ++ EAR + +HPNI + Sbjct: 22 GCFSKVYLAHDRHLAHDLVIKEIEKKENTNHDDYFNEARLLYKHAHPNIVQVQYAAQCES 81 Query: 20443 --YLVMEYIEGKPLQGPMPVETA-----LRHAIEIAKALDAAHRVGIIHRDLKPANILVT 20601 Y+ M + L M +R++I+ L H G++H D+KP NI+++ Sbjct: 82 NIYIAMPFYHNGSLNQLMKKNNLTSREIIRYSIQFLSGLYHIHSKGLMHFDIKPNNIMIS 141 Query: 20602 -KSGIKLLDFGLAKVTAASAVSDETVTRGLTEEGSILGTLQYMAPE--QLAGGEADARSD 20772 ++ L DFGL+++ V++E +R E G ++ PE L+ + + D Sbjct: 142 NRNEAMLSDFGLSQL-----VNEE--SRAAPE----FGYHFHVPPEYFSLSTNDYNFTYD 190 Query: 20773 IFAFGCVLYELLSGEPXXXXXXXXXXXXXXLERE--------XXXXXXXXXXXXXTLQRC 20928 I+ G +Y + G L + +C Sbjct: 191 IYQAGLTIYRMCVGHDNFERERSAFSTIEQLRESIINGCYPLKEYPPHIHKKLITIVNKC 250 Query: 20929 LAKDPDDRWQSARDL 20973 + DP++R+QS D+ Sbjct: 251 IHVDPNERYQSVLDV 265 >ref|NP_049482.1|serine Length = 348 Score = 46.6 bits (109), Expect = 1e-04 Identities = 57/255 (22%), Positives = 101/255 (39%), Gaps = 23/255 (9%) Frame = +1 Query: 20278 GGMGEVWKARDTRLKRTVAIK-VSKSNFINRAEH--EARAVAALSHPNICMLYDIGPD-- 20442 G +V+ A D L + IK + K N ++ EAR + +HPNI + Sbjct: 22 GCFSKVYLAHDRHLAHDLVIKEIEKKENTNHDDYFNEARLLYKHAHPNIVQVQYAAQCES 81 Query: 20443 --YLVMEYIEGKPLQGPMPVETA-----LRHAIEIAKALDAAHRVGIIHRDLKPANILVT 20601 Y+ M + L M +R++I+ L H G++H D+KP NI+++ Sbjct: 82 NIYIAMPFYHNGSLNQLMKKNNLTSREIIRYSIQFLSGLYHIHSKGLMHFDIKPNNIMIS 141 Query: 20602 -KSGIKLLDFGLAKVTAASAVSDETVTRGLTEEGSILGTLQYMAPE--QLAGGEADARSD 20772 ++ L DFGL+++ V++E +R E G ++ PE L+ + + D Sbjct: 142 NRNEAMLSDFGLSQL-----VNEE--SRAAPE----FGYHFHVPPEYFSLSTNDYNFTYD 190 Query: 20773 IFAFGCVLYELLSGEPXXXXXXXXXXXXXXLERE--------XXXXXXXXXXXXXTLQRC 20928 I+ G +Y + G L + +C Sbjct: 191 IYQAGLTIYRMCVGHDNFERERSAFSTIEQLRESIINGCYPLKEYPPHIHKKLITIVNKC 250 Query: 20929 LAKDPDDRWQSARDL 20973 + DP++R+QS D+ Sbjct: 251 IHVDPNERYQSVLDV 265 >ref|YP_195157.1|sliding clamp loader gp44 Length = 315 Score = 46.2 bits (108), Expect = 2e-04 Identities = 47/188 (25%), Positives = 78/188 (41%) Frame = +3 Query: 9513 KYRPQSFADVICQEHVKTTLENAIAQHRIAHGYIFSGQRGTGKTTIARILARCLNCVQGP 9692 +YRP+S D I +K + + + Q I + + +G G GKTTIA+ + + Sbjct: 11 QYRPKSVDDCILPTSIKNSFKAFVEQGEIPN-LLLTGSAGVGKTTIAKAVCEQIG----- 64 Query: 9693 TATPCGVCASCKEISEGGTVDVIEIDAASNRGINEMRELRENVRYQPARDRYKIFIIDEA 9872 A+ + S EG +D + N +R+ V +K+ IIDEA Sbjct: 65 -ASYIVINGS----DEGRFLDTVR---------NRVRQFATTVSLTSGAP-HKVVIIDEA 109 Query: 9873 HQITNEAFNALLKTIEEPPEWAVFVLCTTESHKIPATIASRCQHFSFRSVDFQELVDRMS 10052 T++ +L +EE F+ +KI + SRC FR QE + + Sbjct: 110 DNTTHDVQLSLRTAVEEFHGNCRFIFTCNFQNKIIEPLHSRCTVIDFRIKKEQEQILQGQ 169 Query: 10053 WICGQEGI 10076 + +GI Sbjct: 170 FFVRLKGI 177 >ref|NP_861749.1|gp44 clamp loader subunit, DNA polymerase accessory protein Length = 320 Score = 45.1 bits (105), Expect = 4e-04 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 15/119 (12%) Frame = +3 Query: 9501 VIARKYRPQSFADVICQEHVKTTLENAIAQHRIAHGYIFSGQRGTGKTTIARILARCLNC 9680 ++ +KYRP S + I + T ++ +++ ++ H + S GTGKTT+A+ L +N Sbjct: 10 ILEQKYRPSSIDECILPAYDHETFKSLVSKGKLPHIILHSPSPGTGKTTVAKALCNDINA 69 Query: 9681 --------------VQGPTATPCGVCASCKEISEGGTVDVIEIDAASNRGINE-MRELR 9812 V+GP + A + +S G VI ID G+ E R LR Sbjct: 70 EMMFVNGSDCKIDFVRGP------LTAFARSVSMEGKPKVIVIDEFDRSGLAESQRHLR 122 >ref|NP_943898.1|gp44 clamp loader subunit Length = 321 Score = 42.0 bits (97), Expect = 0.003 Identities = 47/197 (23%), Positives = 74/197 (37%), Gaps = 8/197 (4%) Frame = +3 Query: 9510 RKYRPQSFADVICQEHVKTTLENAIAQHRIAHGYIFSGQRGTGKTTIARILARCLNCVQG 9689 +KYRP ++ I + + RI H +FS GTGKTT+AR+L Sbjct: 15 QKYRPALISECILPSADIERFKGIVTTGRIPHILLFSKSPGTGKTTMARVL--------- 65 Query: 9690 PTATPCGVCASCKEISEGGTVDVIEIDAASNRGINEMRELRENVRYQPARDRYKIFIIDE 9869 C EI +V+ I R + +L + K+ IIDE Sbjct: 66 -----------CNEID----AEVMFISGGKLRIDDLRNDLTAFASTMTRKPGGKVIIIDE 110 Query: 9870 AHQITNEAFNALLKTIEEPPEWAVFVLCTTES-HKIPATIASRCQHFSFRSVD------- 10025 +A + L++ E V+ T + IP + SR + F + Sbjct: 111 GDNKGMKAVHEELRSWMEAFSSNCSVIMTCNNVEAIPGPLKSRFRQIEFGNPTQDDKLRM 170 Query: 10026 FQELVDRMSWICGQEGI 10076 +E++ R IC EG+ Sbjct: 171 MKEMIVRCETICEMEGV 187 >ref|NP_049665.1|gp44 clamp loader subunit, DNA polymerase accessory protein Length = 319 Score = 40.0 bits (92), Expect = 0.013 Identities = 19/59 (32%), Positives = 33/59 (55%) Frame = +3 Query: 9501 VIARKYRPQSFADVICQEHVKTTLENAIAQHRIAHGYIFSGQRGTGKTTIARILARCLN 9677 ++ +KYRP + + I K T ++ ++ +I H + S GTGKTT+A+ L +N Sbjct: 10 ILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN 68 >ref|NP_932394.1|DNA polymerase accessory protein Length = 319 Score = 39.3 bits (90), Expect = 0.022 Identities = 41/131 (31%), Positives = 56/131 (42%), Gaps = 14/131 (10%) Frame = +3 Query: 9513 KYRPQSFADVICQEHVKTTLENAIAQHRIAHGYIFSGQRGTGKTTIARILARCLNC---- 9680 KYRP + + I EH K + + RI + + S GTGKTT+AR L ++ Sbjct: 14 KYRPGNIDECILPEHDKKIFKAIVKSGRIPNIILHSPSPGTGKTTVARALVAEIDAEFLF 73 Query: 9681 VQGPTA---------TPCGVCASCKEISEGGTVDVIEIDAASNRGI-NEMRELRENVRYQ 9830 V G A TP AS K +GG VI +D G+ + R LR + Sbjct: 74 VNGADAKIDFVRDVMTP---FASSKTFCKGG--KVIIVDEFDRAGLADSQRHLRS---FM 125 Query: 9831 PARDRYKIFII 9863 A + FII Sbjct: 126 EAHSKNCTFII 136 >ref|NP_891600.1|Gp44 Length = 324 Score = 38.5 bits (88), Expect = 0.038 Identities = 20/51 (39%), Positives = 28/51 (54%) Frame = +3 Query: 9510 RKYRPQSFADVICQEHVKTTLENAIAQHRIAHGYIFSGQRGTGKTTIARIL 9662 +KYRP+S ++ I E K + Q RI + S GTGKTT+A+ L Sbjct: 13 QKYRPKSISECILPEADKKIFAQIVKQGRIPSMILHSPSPGTGKTTVAKAL 63 >ref|YP_195210.1|virion structural protein Length = 1177 Score = 37.4 bits (85), Expect = 0.084 Identities = 67/323 (20%), Positives = 107/323 (33%), Gaps = 33/323 (10%) Frame = -1 Query: 24782 PLLIYSTYYGGNGLDYAYAVAVD-SIGNTYVAGASGSANFNILGTEDAFVMKLRPNGARL 24606 P L +T NGL + V+ S+GN+ + S FN + ++L G Sbjct: 508 PSLGAATATSINGLSFGSTVSASLSVGNSKAISFNNSVTFNTAQNDSTITVQLSNGGTVA 567 Query: 24605 YTT----FFGGAALDEAKGIAVDLQG--------------------NTYVTGNTGSLDFP 24498 YT+ F ++ +G+ D G +T+ NTG + Sbjct: 568 YTSNTLAVFASTTSNQLRGVISDSTGVGKAVFNQNPSFADSITTSSSTFSVFNTGVTNIN 627 Query: 24497 VKGPIQAKTGGSGDAFVAKLNPAGALVYATYLGGGANDSGSAIALDAAGNAYIVGITFST 24318 G T G+ N AT N+SG I ++ A N +T Sbjct: 628 AFGAATTITMGAISGTTTIRNSLQVDGSATI----GNESGDIITVNGATNFNNEDLTLRG 683 Query: 24317 DFPTKNPFQAAKGAQQDAFVAKINPAGSSLVYSTYLGGNNVDEGY--AIAVDASGNAYVT 24144 + NP + +G +A G + S G NN GY + ++ N Sbjct: 684 S--SDNPIKIGRGGNA---IATNTRVGYRALESNTTGANNTAFGYESSFVLNTGSNNTSF 738 Query: 24143 GYTASTNFPLQSPFRASNAASVDAFVTKINPAGSALVYSTYLGGTATDYGTAI------A 23982 GY A + + A + S + + G + T T T+Y I A Sbjct: 739 GYQALRSSGIGEGNVAFGSQSCISVTEGVGNVGVGTL--TLSSVTDTNYNVCIGHYAGAA 796 Query: 23981 VDSSGSAYVTGIVTSDDFPVVNA 23913 + SG+ + T D A Sbjct: 797 LTGSGNVLIGPASTEDSLSATYA 819 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 35.8 bits (81), Expect = 0.25 Identities = 49/157 (31%), Positives = 56/157 (35%), Gaps = 15/157 (9%) Frame = -3 Query: 23400 GHAGRMVLRERHGARRRHADLGRQRFCRSEHPAHQPQWRGGL--------GQ----RGPR 23257 G AGR + ER G + A R R E P+ R G+ GQ RGPR Sbjct: 389 GQAGRRTV-ERRGLQGADAGGIRARRDDQEPVRRLPRRRAGVCRADRRREGQVRRLRGPR 447 Query: 23256 AGVFH*PGPGQCAGAIQHLRHLHGPGGPSRI---GQQHPDGPGCPDPTWPLLLPGRRQGL 23086 G G +CAG H G G R G+ DG G L GR QG Sbjct: 448 QGRVGQGGRARCAGPRLRFDH-SGVGEQGRCQGQGRADQDGGGAHQGVEVLGGRGRLQG- 505 Query: 23085 CSGAVCRLHDHGRPRRGARNPQGQAGRHHPTLRLGSR 22975 H G+P RGA G G R G R Sbjct: 506 --------HPAGQPERGAVQHVGVPGPGRSLARSGQR 534 >ref|NP_859295.1|hypothetical protein Length = 2576 Score = 35.4 bits (80), Expect = 0.32 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = +2 Query: 6206 REAADLHRDSLVHHHFRWRHV--DGLRRGAHRDSTGDQNPHGNSIPFTDSMAPAVPARPF 6379 R+ D HRD LV H R + + R +RD TG + GN P S A F Sbjct: 1162 RKYIDSHRDELVRHVKEMREISREEQRNATNRDRTGPERRKGNVSPEQFSDAFGFRGVQF 1221 Query: 6380 GPWPDGP 6400 G + +GP Sbjct: 1222 GNYVEGP 1228 >ref|NP_612929.1|hypothetical protein Length = 2806 Score = 35.4 bits (80), Expect = 0.32 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = +2 Query: 6206 REAADLHRDSLVHHHFRWRHV--DGLRRGAHRDSTGDQNPHGNSIPFTDSMAPAVPARPF 6379 R+ D HRD LV H R + + R +RD TG + GN P S A F Sbjct: 1162 RKYIDSHRDELVRHVKEMREISREEQRNATNRDRTGPERRKGNVSPEQFSDAFGFRGVQF 1221 Query: 6380 GPWPDGP 6400 G + +GP Sbjct: 1222 GNYVEGP 1228 >ref|NP_859129.1|hypothetical protein Length = 2806 Score = 35.4 bits (80), Expect = 0.32 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = +2 Query: 6206 REAADLHRDSLVHHHFRWRHV--DGLRRGAHRDSTGDQNPHGNSIPFTDSMAPAVPARPF 6379 R+ D HRD LV H R + + R +RD TG + GN P S A F Sbjct: 1162 RKYIDSHRDELVRHVKEMREISREEQRNATNRDRTGPERRKGNVSPEQFSDAFGFRGVQF 1221 Query: 6380 GPWPDGP 6400 G + +GP Sbjct: 1222 GNYVEGP 1228 >ref|NP_050570.1|hypothetical protein Length = 2806 Score = 35.4 bits (80), Expect = 0.32 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = +2 Query: 6206 REAADLHRDSLVHHHFRWRHV--DGLRRGAHRDSTGDQNPHGNSIPFTDSMAPAVPARPF 6379 R+ D HRD LV H R + + R +RD TG + GN P S A F Sbjct: 1162 RKYIDSHRDELVRHVKEMREISREEQRNATNRDRTGPERRKGNVSPEQFSDAFGFRGVQF 1221 Query: 6380 GPWPDGP 6400 G + +GP Sbjct: 1222 GNYVEGP 1228 >ref|NP_049532.1|hypothetical protein Length = 2806 Score = 35.4 bits (80), Expect = 0.32 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = +2 Query: 6206 REAADLHRDSLVHHHFRWRHV--DGLRRGAHRDSTGDQNPHGNSIPFTDSMAPAVPARPF 6379 R+ D HRD LV H R + + R +RD TG + GN P S A F Sbjct: 1162 RKYIDSHRDELVRHVKEMREISREEQRNATNRDRTGPERRKGNVSPEQFSDAFGFRGVQF 1221 Query: 6380 GPWPDGP 6400 G + +GP Sbjct: 1222 GNYVEGP 1228 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 141,518,036 Number of Sequences: 14420 Number of extensions: 3014318 Number of successful extensions: 10597 Number of sequences better than 0.5: 20 Number of HSP's better than 0.5 without gapping: 5497 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10576 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 13312039577 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig108 (29,872 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_053021.1|hypothetical protein 38 0.051 ref|NP_542296.1|unknown 38 0.051 ref|NP_039677.1|predicted 66.2Kd protein 38 0.051 ref|NP_203461.1|hypothetical protein 38 0.051 ref|YP_077236.1|Hypothetical protein 36 0.19 ref|NP_046828.1|gp13 35 0.43 >ref|YP_053021.1|hypothetical protein Length = 444 Score = 38.1 bits (87), Expect = 0.051 Identities = 55/243 (22%), Positives = 89/243 (36%), Gaps = 32/243 (13%) Frame = -1 Query: 24010 TNNDGGTWAQRK------IPNVSGLRALAFGDENRGLAIGEGGVIVATSDAGRTWQKRP- 23852 + N G TW +P+ A D + + + +GG +++ G +W P Sbjct: 160 STNGGATWNSLPQGLGTGVPSFQATPKGAASDGSTVVVVYDGGYSAKSTNGGVSWVSLPR 219 Query: 23851 ----SATTENLTDIQMIGDEGWIAGFDGVILHTSDGGKTWSKQESGVTLSLETLYFLDPQ 23684 + N+ + + G+ AG G ++DGG TWS G L + T + Sbjct: 220 FFFSGTSAVNINCVAVSGNTIVQAGASGYARRSTDGGSTWSNLPRG--LGMRTDGTITKM 277 Query: 23683 NGWAAGWAGLVLHTVDGGKKWQ--------IVKVPGASWSLSSIAFRDAKDGWISGFA-- 23534 +G G V+ V G + Q I GA+W+ +I D ++ Sbjct: 278 HG-----RGNVI--VAGNSEQQNSDPTTLTISTNGGATWTGKNIGSPDGLGSRMATMCHV 330 Query: 23533 --------GQLFHT---RDGGATWESKTTPYSGWLTSIGFDGANRGWITTDDGFLMSTDA 23387 G HT R+GG+TW WL S G N G +++ L Sbjct: 331 VDSSVIVYGMQLHTAISRNGGSTWT--------WLPS----GLNSGSGSSNTTMLCMDSV 378 Query: 23386 GET 23378 G+T Sbjct: 379 GDT 381 >ref|NP_542296.1|unknown Length = 111 Score = 38.1 bits (87), Expect = 0.051 Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Frame = +3 Query: 609 RLRRCSTSAPARPFRPWSAVSRSRWTTRDARVTPVRIRSTSRCPPTFRPAAPYRCRF-RS 785 R+RRC A RP P A S + TR +T + P FRP P RCR R+ Sbjct: 8 RIRRCG--AAQRPLSP--ACSLASVPTRPGALTTTTL-------PAFRPIGPRRCRARRA 56 Query: 786 TANSALLLPSRSRPTPIR 839 +A + +PS RP P R Sbjct: 57 SAITCSTIPSPGRPGPRR 74 >ref|NP_039677.1|predicted 66.2Kd protein Length = 593 Score = 38.1 bits (87), Expect = 0.051 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Frame = -2 Query: 9855 DTRVSRVHARILVEDGGYVLEDIGSRHGTFING-----QRVTRKRLDVSDRIEFGAQDSY 9691 D +V+ HA V +G + GSR + N + V K D +++ G Sbjct: 230 DGKVNEGHAMAEVIEGNMTKVE-GSRTLSICNAHIPGTETVAEKAWDEYQKVQAGDSVDT 288 Query: 9690 HLLFALDGAELKRLMEQVGAGEKQPPGVGSNLGKLRAILELARTLQTSFSIDEVLASVVD 9511 +++ A + ++ ++ P G + KLR L +AR T ID+++ S++ Sbjct: 289 GMMYDALEAPADTPVSEIPPQKEDPEGFEKGIEKLREGLLIARGDSTWLPIDDIIKSILS 348 Query: 9510 TALAITGAERGFL 9472 T IT + R FL Sbjct: 349 TKNPITESRRKFL 361 >ref|NP_203461.1|hypothetical protein Length = 373 Score = 38.1 bits (87), Expect = 0.051 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%) Frame = -2 Query: 22839 SAKTTAPKSKPGSRTSTCSTPPASPGSPPNCGATISSAAVSARPTASWIRTA**PASCS- 22663 SA T AP + T+ + PA + P AT ++ A PT PA + Sbjct: 19 SAPTPAPTTPAAVATAAATAAPAQEATAPTPIATSAAKESPAAPTGGTEEPGATPAEAAG 78 Query: 22662 -KPWSAASSCCATPKSPAFAPTP 22597 KP AAS+ A P PA + TP Sbjct: 79 AKPSEAASTATAKPDEPAQSATP 101 >ref|YP_077236.1|Hypothetical protein Length = 162 Score = 36.2 bits (82), Expect = 0.19 Identities = 24/97 (24%), Positives = 41/97 (42%) Frame = +1 Query: 9613 GRLFFAGAHLLHQPLELGAIEREQQMVGILRAELDSIGDIQPLPRDALAVDESAVPAADI 9792 GR+F HL Q + ERE I+ + +G + P+P+DA+ + P DI Sbjct: 40 GRVFTYDLHLFLQAFD-DPRERELIKFTIVSGLVSRLGSLYPIPKDAIVTSVKSYPLKDI 98 Query: 9793 LQHVAAILHQDAGMDTGYSGVAQNQVIVGLAANEKRV 9903 + I + A G + + I + N+ R+ Sbjct: 99 NHVIIKITYTTANDHKGGETCIEIEQIAKITTNDSRL 135 >ref|NP_046828.1|gp13 Length = 595 Score = 35.0 bits (79), Expect = 0.43 Identities = 26/108 (24%), Positives = 52/108 (48%) Frame = -2 Query: 9648 MEQVGAGEKQPPGVGSNLGKLRAILELARTLQTSFSIDEVLASVVDTALAITGAERGFLL 9469 + ++ + ++ P G + KLR L +AR T ID+++ S++ T +IT + R F L Sbjct: 305 ISEIPSEKENPDGFREGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNSITESRRKF-L 363 Query: 9468 LRSGAALDTKVARHRQGHNLRETDLRVPREVIRRALEHRRELLSMNFD 9325 + AA D+ ++ + D + + A R + +++ FD Sbjct: 364 NQVNAAEDSWLSPQEWNRCFADPDKYLDKMGFELAPLDRGQKITLGFD 411 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 139,021,510 Number of Sequences: 14420 Number of extensions: 2884191 Number of successful extensions: 10496 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 5449 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10478 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 13681779843 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig109 (29,708 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_025041.1|putative transposase B 69 3e-11 ref|NP_958229.1|gene 55 protein 64 7e-10 ref|NP_859396.1|hypothetical protein 64 1e-09 ref|NP_536395.1|ISBt3 transposase subunit protein 54 9e-07 ref|NP_108682.1|cI2009 49 4e-05 ref|NP_076698.1|repressor 48 5e-05 ref|NP_116527.1|cI repressor 47 1e-04 ref|NP_695031.1|Repressor 47 1e-04 ref|NP_996677.1|phage repressor 47 1e-04 ref|NP_059606.1|C2 40 0.010 ref|NP_877470.1|Pro-and Ala-rich protein 39 0.039 ref|NP_599074.1|unknown 38 0.051 >ref|YP_025041.1|putative transposase B Length = 280 Score = 68.9 bits (167), Expect = 3e-11 Identities = 46/152 (30%), Positives = 85/152 (55%), Gaps = 11/152 (7%) Frame = +3 Query: 29076 MCQLVGVSRAGYYRHWEVVAPDEAEMAARDA-----IQKVVLAHHRRYGYRRVTAQLHRQ 29240 MC+++GVSRA YYR+ +P ++ A DA I ++ +RYG ++ +L+ + Sbjct: 1 MCRILGVSRAQYYRYR---SPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLE 57 Query: 29241 GNII----NHKRVLRIMGEDNLLAIRYRKYIMTTDSRHDYPVYVNLAAR-MTLTGINQLW 29405 + + +R+ R+M E ++ ++ K+ + S+ NL + + TG+NQ W Sbjct: 58 LQPLQLRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKW 117 Query: 29406 IADITYIRLRRE-FVYLAIVLDRFSRKAIGWS 29498 AD+TYI+ +R + YL+ ++D SR+ IG+S Sbjct: 118 TADMTYIQTKRNGWCYLSTIMDLHSRRIIGYS 149 >ref|NP_958229.1|gene 55 protein Length = 306 Score = 64.3 bits (155), Expect = 7e-10 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 2/144 (1%) Frame = +3 Query: 29076 MCQLVGVSRAGYYRHWE--VVAPDEAEMAARDAIQKVVLAHHRRYGYRRVTAQLHRQGNI 29249 +C + GV R+ Y R+W+ PD R + ++ H G R + R+G Sbjct: 31 LCHVFGVHRSSY-RYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQ 89 Query: 29250 INHKRVLRIMGEDNLLAIRYRKYIMTTDSRHDYPVYVNLAARMTLTGINQLWIADITYIR 29429 + R+M E L++ + + + L + +T NQ+W D+TYI Sbjct: 90 MGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIW 149 Query: 29430 LRREFVYLAIVLDRFSRKAIGWSL 29501 + + YLA+VLD F+RK +GW++ Sbjct: 150 TGKRWAYLAVVLDLFARKPVGWAM 173 >ref|NP_859396.1|hypothetical protein Length = 296 Score = 63.5 bits (153), Expect = 1e-09 Identities = 36/109 (33%), Positives = 56/109 (51%) Frame = +3 Query: 29169 IQKVVLAHHRRYGYRRVTAQLHRQGNIINHKRVLRIMGEDNLLAIRYRKYIMTTDSRHDY 29348 IQ+V +H+ YG R+V QL R+G + V R+M L + K + TT SR Sbjct: 55 IQRVYDENHQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAV 114 Query: 29349 PVYVNLAARMTLTGINQLWIADITYIRLRREFVYLAIVLDRFSRKAIGW 29495 + + +QLW+AD TY+ + FVY+A ++D F+ +GW Sbjct: 115 AAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGW 163 >ref|NP_536395.1|ISBt3 transposase subunit protein Length = 284 Score = 53.9 bits (128), Expect = 9e-07 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 9/143 (6%) Frame = +3 Query: 29094 VSRAGYYRHWEVVAPDEAEMAAR--------DAIQKVVLAHHRRYGYRRVTAQLHRQGNI 29249 ++ +GY RH + D ++ AR I++V A+ + YG +V Q++R+G Sbjct: 3 IAPSGYRRHAAQLR-DPSKRCARAKRDELLQPEIKRVWQANMQVYGVPKVWKQMNREGIT 61 Query: 29250 INHKRVLRIMGEDNLLAIRYRKYIMTTDSRHDYPVYVNLAARMTLTGI-NQLWIADITYI 29426 + V R+M L K + TT + P ++ R NQLW++D TY+ Sbjct: 62 VARCTVGRLMKLQGLRGAVRGKRVRTTITDVTAPRPLDRVNRQFKADRPNQLWVSDFTYV 121 Query: 29427 RLRREFVYLAIVLDRFSRKAIGW 29495 + ++Y+A V+D F+R+ +GW Sbjct: 122 STWQGWLYVAFVIDVFARRIVGW 144 >ref|NP_108682.1|cI2009 Length = 286 Score = 48.5 bits (114), Expect = 4e-05 Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 6/185 (3%) Frame = +2 Query: 22436 RQKQVLDFIGNFVDENGYCPSYEEIARGLELASLATVHKHISVLEAKSYLKRGFNQSRSL 22615 RQK VL+ N +DE +E + ++ + + + ++ L+ S ++ Sbjct: 97 RQKIVLNTATNQLDEQN-----QEKKKESKVIPINKIPDDLPPYISRKILENFIMPSNTM 151 Query: 22616 ELTPKYVQEQRRTRPAIAEIPMLGRIAAGLPVEAVEQRE-----VLNFADFAGDGNTFAL 22780 E P + ++P+LGRIAAGLP++AVE + +F A D + L Sbjct: 152 EYEPD---------EDMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARD--YYWL 200 Query: 22781 EVRGNSMIDDHICDGDVILLERVTQARDGDIVVALVAGS-DTTLKRFYRESADTIRLQPA 22957 V G+SM + I G +L+E V DG I L TLK+ Y E D +RL Sbjct: 201 MVDGHSM-EPKIPYGAYVLIEAVPDVSDGTIGAVLFQDDCQATLKKVYHE-IDCLRLVSI 258 Query: 22958 NAALK 22972 N K Sbjct: 259 NKEFK 263 >ref|NP_076698.1|repressor Length = 278 Score = 48.1 bits (113), Expect = 5e-05 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 6/109 (5%) Frame = +2 Query: 22664 IAEIPMLGRIAAGLPVEAVEQRE-----VLNFADFAGDGNTFALEVRGNSMIDDHICDGD 22828 + ++P+LGRIAAGLP++AVE + +F A D + L V G+SM + I G Sbjct: 151 MVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARD--YYWLMVDGHSM-EPKIPFGS 207 Query: 22829 VILLERVTQARDGDIVVALVAGS-DTTLKRFYRESADTIRLQPANAALK 22972 +L+E V DG I L TLK+ Y E D +RL N K Sbjct: 208 YVLIEAVPDVTDGTIGAVLFQDDCQATLKKVYHE-IDCLRLVSINKEFK 255 >ref|NP_116527.1|cI repressor Length = 297 Score = 47.0 bits (110), Expect = 1e-04 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 6/109 (5%) Frame = +2 Query: 22664 IAEIPMLGRIAAGLPVEAVEQRE-----VLNFADFAGDGNTFALEVRGNSMIDDHICDGD 22828 + ++P+LGRIAAGLP++AVE + +F A D + L V G+SM + I G Sbjct: 170 MVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARD--YYWLMVDGHSM-EPKIPYGA 226 Query: 22829 VILLERVTQARDGDIVVALVAGS-DTTLKRFYRESADTIRLQPANAALK 22972 +L+E V DG I L TLK+ Y E D +RL N K Sbjct: 227 YVLIEAVPDVTDGTIGAVLFHDDCQATLKKVYHE-IDCLRLVSINKEFK 274 >ref|NP_695031.1|Repressor Length = 278 Score = 47.0 bits (110), Expect = 1e-04 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 6/109 (5%) Frame = +2 Query: 22664 IAEIPMLGRIAAGLPVEAVEQRE-----VLNFADFAGDGNTFALEVRGNSMIDDHICDGD 22828 + ++P+LGRIAAGLP++AVE + +F A D + L V G+SM + I G Sbjct: 151 MVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARD--YYWLMVDGHSM-EPKIPYGA 207 Query: 22829 VILLERVTQARDGDIVVALVAGS-DTTLKRFYRESADTIRLQPANAALK 22972 +L+E V DG I L TLK+ Y E D +RL N K Sbjct: 208 YVLIEAVPDVSDGTIGAVLFHDDCQATLKKVYHE-IDCLRLVSINKEFK 255 >ref|NP_996677.1|phage repressor Length = 286 Score = 47.0 bits (110), Expect = 1e-04 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 6/109 (5%) Frame = +2 Query: 22664 IAEIPMLGRIAAGLPVEAVEQRE-----VLNFADFAGDGNTFALEVRGNSMIDDHICDGD 22828 + ++P+LGRIAAGLP++AVE + +F A D + L V G+SM + I G Sbjct: 159 MVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARD--YYWLMVDGHSM-EPKIPYGA 215 Query: 22829 VILLERVTQARDGDIVVALVAGS-DTTLKRFYRESADTIRLQPANAALK 22972 +L+E V DG I L TLK+ Y E D +RL N K Sbjct: 216 YVLIEAVPDVSDGTIGAVLFHDDCQATLKKVYHE-IDCLRLVSINKEFK 263 >ref|NP_059606.1|C2 Length = 216 Score = 40.4 bits (93), Expect = 0.010 Identities = 37/137 (27%), Positives = 73/137 (53%), Gaps = 18/137 (13%) Frame = +2 Query: 22604 SRSLELTPKYVQEQRRTRPAIA---------EIPMLGRIAAGLPVEAVE---QREVLNFA 22747 S++L+ +P Y+ + ++ +A P++ ++AG +EAVE +R + N+ Sbjct: 54 SKALQCSPDYLLKGDLSQTNVAYHSRHEPRGSYPLISWVSAGQWMEAVEPYHKRAIENWH 113 Query: 22748 DFAGD--GNTFALEVRGNSMIDD---HICDGDVILLERVTQARDGDIVVALVAG-SDTTL 22909 D D ++F L+V+G+SM I +G +IL++ + R+G +VVA + G ++ T Sbjct: 114 DTTVDCSEDSFWLDVQGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEATF 173 Query: 22910 KRFYRESADTIRLQPAN 22960 K+ ++ L+P N Sbjct: 174 KKLVMDAGRKF-LKPLN 189 >ref|NP_877470.1|Pro-and Ala-rich protein Length = 322 Score = 38.5 bits (88), Expect = 0.039 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = -3 Query: 7641 PLPTSPSARRLRPRTPPAHGSPLAPSPVARASPAHPPPPGSLIP 7510 P+PTS +P PA G P+ P A+ +P PP G+++P Sbjct: 65 PVPTSAMTPHYQPVAVPAAGQPVVPQAPAQPAPVAPPAAGAVLP 108 >ref|NP_599074.1|unknown Length = 108 Score = 38.1 bits (87), Expect = 0.051 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Frame = +2 Query: 22427 LTKRQKQVLDFIGNFVDENGYCPSYEEIARGLELASLATVHKHISVLEAKSY--LKRGFN 22600 LT+ Q+QVLD + ++ E G+ P+ +E+A L S+ +H+ LE K +KRG Sbjct: 4 LTQCQQQVLDMLISYQKERGFPPTNQEVATMLGYRSVNAAVEHLRALEKKGIITIKRGVA 63 Query: 22601 QSRSLELTPK 22630 + +L K Sbjct: 64 RGITLHTAVK 73 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 130,150,293 Number of Sequences: 14420 Number of extensions: 2607732 Number of successful extensions: 9873 Number of sequences better than 0.5: 12 Number of HSP's better than 0.5 without gapping: 5299 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9829 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 13606719789 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig110 (32,352 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_612994.1|hypothetical protein 101 4e-21 ref|NP_049482.1|serine 101 4e-21 ref|NP_848303.1|internal virion protein 59 2e-08 ref|NP_052116.1|internal virion protein D 59 3e-08 ref|NP_523341.1|internal virion protein D 59 4e-08 ref|NP_042004.1|internal virion protein D 55 3e-07 ref|NP_813780.1|internal virion protein D 52 4e-06 ref|NP_046572.1|ABC transporter 49 3e-05 ref|NP_046584.1|putative transglycosylase 47 2e-04 ref|NP_817472.1|gp22 36 0.21 >ref|NP_612994.1|hypothetical protein Length = 348 Score = 101 bits (252), Expect = 4e-21 Identities = 74/279 (26%), Positives = 122/279 (43%), Gaps = 7/279 (2%) Frame = -1 Query: 19539 RQIAHFEIVERLGEGG-MGAVYKARDRHLDRDVALKVLLPEAVGNADRRRRFVREAKAAS 19363 R FE + L E G VY A DRHL D+ +K + + N D + EA+ Sbjct: 7 RADVEFEWISDLEEQGCFSKVYLAHDRHLAHDLVIKEIEKKENTNHDD---YFNEARLLY 63 Query: 19362 GLNHPNIVHIYDIDESEGELFIAMEYVAGKTLEQAIDRKGLTLREALRYAVPMADALAKA 19183 HPNIV + + E ++IAM + +L Q + + LT RE +RY++ L Sbjct: 64 KHAHPNIVQVQYAAQCESNIYIAMPFYHNGSLNQLMKKNNLTSREIIRYSIQFLSGLYHI 123 Query: 19182 HAAGIVHRDFKPSNVMITGERTVKVLDFGLAKLMXXXXXXXXXXXTVPMHEAGQTREGTV 19003 H+ G++H D KP+N+MI+ + DFGL++L+ ++R Sbjct: 124 HSKGLMHFDIKPNNIMISNRNEAMLSDFGLSQLVNE-----------------ESRAAPE 166 Query: 19002 VGTAAYMSPE--QAEGKPVDGRSDIFSFGAVLYEMLTGRRAFCGATRMATITSVLRDE-- 18835 G ++ PE + DI+ G +Y M G F + LR+ Sbjct: 167 FGYHFHVPPEYFSLSTNDYNFTYDIYQAGLTIYRMCVGHDNFERERSAFSTIEQLRESII 226 Query: 18834 --PKPVGETRDTVPKELERVIARCLRKDPDRRFQHMEDL 18724 P+ E + K+L ++ +C+ DP+ R+Q + D+ Sbjct: 227 NGCYPLKEYPPHIHKKLITIVNKCIHVDPNERYQSVLDV 265 Score = 51.2 bits (121), Expect = 6e-06 Identities = 59/263 (22%), Positives = 100/263 (38%), Gaps = 15/263 (5%) Frame = -3 Query: 16813 EGGMGAVYRAGDTKLNRDVAIKVLPESFAQDPDRLARFTREAQLLAGLNHPNIA----AI 16646 +G VY A D L D+ IK + + + D + EA+LL HPNI A Sbjct: 21 QGCFSKVYLAHDRHLAHDLVIKEIEKKENTNHDD---YFNEARLLYKHAHPNIVQVQYAA 77 Query: 16645 YGXXXXXXXXXXXEGPTLADRIAQGPIPLDEALPIARQLAEALEYAHEKGVIHRDLKPAN 16466 +L + + + E + + Q L + H KG++H D+KP N Sbjct: 78 QCESNIYIAMPFYHNGSLNQLMKKNNLTSREIIRYSIQFLSGLYHIHSKGLMHFDIKPNN 137 Query: 16465 IKITHEGRVKVLDFGLAKALAPETVAGDPSSSPTMTMRATALGMIMGTAGYMSPEQARGK 16286 I I++ + DFGL++ + E+ A G ++ PE Sbjct: 138 IMISNRNEAMLSDFGLSQLVNEESRAAPE----------------FGYHFHVPPEYFSLS 181 Query: 16285 RVDRR--ADIWAFGVVFYEMVTGRALFDGD-----TVSDLIAQVLTKEPDLDAAP----E 16139 D DI+ G+ Y M G F+ + T+ L ++ L P + Sbjct: 182 TNDYNFTYDIYQAGLTIYRMCVGHDNFERERSAFSTIEQLRESIINGCYPLKEYPPHIHK 241 Query: 16138 NLRPLLRRCLERDERKRLRDIGD 16070 L ++ +C+ D +R + + D Sbjct: 242 KLITIVNKCIHVDPNERYQSVLD 264 >ref|NP_049482.1|serine Length = 348 Score = 101 bits (252), Expect = 4e-21 Identities = 74/279 (26%), Positives = 122/279 (43%), Gaps = 7/279 (2%) Frame = -1 Query: 19539 RQIAHFEIVERLGEGG-MGAVYKARDRHLDRDVALKVLLPEAVGNADRRRRFVREAKAAS 19363 R FE + L E G VY A DRHL D+ +K + + N D + EA+ Sbjct: 7 RADVEFEWISDLEEQGCFSKVYLAHDRHLAHDLVIKEIEKKENTNHDD---YFNEARLLY 63 Query: 19362 GLNHPNIVHIYDIDESEGELFIAMEYVAGKTLEQAIDRKGLTLREALRYAVPMADALAKA 19183 HPNIV + + E ++IAM + +L Q + + LT RE +RY++ L Sbjct: 64 KHAHPNIVQVQYAAQCESNIYIAMPFYHNGSLNQLMKKNNLTSREIIRYSIQFLSGLYHI 123 Query: 19182 HAAGIVHRDFKPSNVMITGERTVKVLDFGLAKLMXXXXXXXXXXXTVPMHEAGQTREGTV 19003 H+ G++H D KP+N+MI+ + DFGL++L+ ++R Sbjct: 124 HSKGLMHFDIKPNNIMISNRNEAMLSDFGLSQLVNE-----------------ESRAAPE 166 Query: 19002 VGTAAYMSPE--QAEGKPVDGRSDIFSFGAVLYEMLTGRRAFCGATRMATITSVLRDE-- 18835 G ++ PE + DI+ G +Y M G F + LR+ Sbjct: 167 FGYHFHVPPEYFSLSTNDYNFTYDIYQAGLTIYRMCVGHDNFERERSAFSTIEQLRESII 226 Query: 18834 --PKPVGETRDTVPKELERVIARCLRKDPDRRFQHMEDL 18724 P+ E + K+L ++ +C+ DP+ R+Q + D+ Sbjct: 227 NGCYPLKEYPPHIHKKLITIVNKCIHVDPNERYQSVLDV 265 Score = 51.2 bits (121), Expect = 6e-06 Identities = 59/263 (22%), Positives = 100/263 (38%), Gaps = 15/263 (5%) Frame = -3 Query: 16813 EGGMGAVYRAGDTKLNRDVAIKVLPESFAQDPDRLARFTREAQLLAGLNHPNIA----AI 16646 +G VY A D L D+ IK + + + D + EA+LL HPNI A Sbjct: 21 QGCFSKVYLAHDRHLAHDLVIKEIEKKENTNHDD---YFNEARLLYKHAHPNIVQVQYAA 77 Query: 16645 YGXXXXXXXXXXXEGPTLADRIAQGPIPLDEALPIARQLAEALEYAHEKGVIHRDLKPAN 16466 +L + + + E + + Q L + H KG++H D+KP N Sbjct: 78 QCESNIYIAMPFYHNGSLNQLMKKNNLTSREIIRYSIQFLSGLYHIHSKGLMHFDIKPNN 137 Query: 16465 IKITHEGRVKVLDFGLAKALAPETVAGDPSSSPTMTMRATALGMIMGTAGYMSPEQARGK 16286 I I++ + DFGL++ + E+ A G ++ PE Sbjct: 138 IMISNRNEAMLSDFGLSQLVNEESRAAPE----------------FGYHFHVPPEYFSLS 181 Query: 16285 RVDRR--ADIWAFGVVFYEMVTGRALFDGD-----TVSDLIAQVLTKEPDLDAAP----E 16139 D DI+ G+ Y M G F+ + T+ L ++ L P + Sbjct: 182 TNDYNFTYDIYQAGLTIYRMCVGHDNFERERSAFSTIEQLRESIINGCYPLKEYPPHIHK 241 Query: 16138 NLRPLLRRCLERDERKRLRDIGD 16070 L ++ +C+ D +R + + D Sbjct: 242 KLITIVNKCIHVDPNERYQSVLD 264 >ref|NP_848303.1|internal virion protein Length = 1318 Score = 59.3 bits (142), Expect = 2e-08 Identities = 44/124 (35%), Positives = 61/124 (49%), Gaps = 4/124 (3%) Frame = +1 Query: 25750 YRPMIQRILDEEGVPQELIH-LAQAESGFIPRAISRKAAGGMWQFLTWRGNEYGLKQTRF 25926 Y + Q+ D GV +L+ +A ES F+P A S+ G+ QF N GL+ T Sbjct: 12 YDGLFQKAADANGVSYDLLRKVAWTESRFVPTAKSKTGPLGIMQFTKATANALGLRVTDG 71 Query: 25927 -TDDRMDPEKATRSAARHLRDLYHEF-GDWYLAIAAYNCGPGSV-EKAVERTGYADFWEL 26097 DDR++PE A +AA+HL L +F GD A AYN G G + +E DF + Sbjct: 72 PDDDRLNPELAINAAAKHLAGLVGKFDGDELKAALAYNQGEGRLGNPQLEAYSKGDFASI 131 Query: 26098 RARG 26109 G Sbjct: 132 SEEG 135 >ref|NP_052116.1|internal virion protein D Length = 1320 Score = 58.9 bits (141), Expect = 3e-08 Identities = 41/99 (41%), Positives = 52/99 (52%), Gaps = 3/99 (3%) Frame = +1 Query: 25759 MIQRILDEEGVPQELIH-LAQAESGFIPRAISRKAAGGMWQFLTWRGNEYGLKQTRFTDD 25935 + Q+ D+ GV +L+ LA ES F P+A S G+ QF GLK T DD Sbjct: 14 LFQKAADKHGVSYDLLRKLAFNESSFNPKAKSPTGPKGLMQFTKGTATALGLKVTDADDD 73 Query: 25936 -RMDPEKATRSAARHLRDLYHEF-GDWYLAIAAYNCGPG 26046 R +PE A +AARHL DL ++ GD A AYN G G Sbjct: 74 DRYNPELAVDAAARHLSDLIRKYDGDELKAALAYNQGEG 112 >ref|NP_523341.1|internal virion protein D Length = 1318 Score = 58.5 bits (140), Expect = 4e-08 Identities = 44/124 (35%), Positives = 61/124 (49%), Gaps = 4/124 (3%) Frame = +1 Query: 25750 YRPMIQRILDEEGVPQELIH-LAQAESGFIPRAISRKAAGGMWQFLTWRGNEYGLKQTRF 25926 Y + Q+ D GV +L+ +A ES F+P A S+ G+ QF N GL+ T Sbjct: 12 YDGLFQKEADANGVSYDLLRKVAWTESRFVPTAKSKTGPLGIMQFTKATANALGLRVTDG 71 Query: 25927 -TDDRMDPEKATRSAARHLRDLYHEF-GDWYLAIAAYNCGPGSV-EKAVERTGYADFWEL 26097 DDR++PE A +AA+HL L +F GD A AYN G G + +E DF + Sbjct: 72 PDDDRLNPELAINAAAKHLAGLVGKFDGDELKAALAYNQGEGRLGNPQLEAYSKGDFASI 131 Query: 26098 RARG 26109 G Sbjct: 132 SEEG 135 >ref|NP_042004.1|internal virion protein D Length = 1318 Score = 55.5 bits (132), Expect = 3e-07 Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 4/124 (3%) Frame = +1 Query: 25750 YRPMIQRILDEEGVPQELIH-LAQAESGFIPRAISRKAAGGMWQFLTWRGNEYGLKQTRF 25926 Y + Q+ D GV +L+ +A ES F+P A S+ GM QF GL+ T Sbjct: 12 YDGLFQKAADANGVSYDLLRKVAWTESRFVPTAKSKTGPLGMMQFTKATAKALGLRVTDG 71 Query: 25927 -TDDRMDPEKATRSAARHLRDLYHEF-GDWYLAIAAYNCGPGSV-EKAVERTGYADFWEL 26097 DDR++PE A +AA+ L L +F GD A AYN G G + +E DF + Sbjct: 72 PDDDRLNPELAINAAAKQLAGLVGKFDGDELKAALAYNQGEGRLGNPQLEAYSKGDFASI 131 Query: 26098 RARG 26109 G Sbjct: 132 SEEG 135 >ref|NP_813780.1|internal virion protein D Length = 1392 Score = 52.0 bits (123), Expect = 4e-06 Identities = 37/101 (36%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Frame = +1 Query: 25750 YRPMIQRILDEEGVPQELIHLAQ-AESGFIPRAISRKAAGGMWQFLTWRGNEYGLKQTRF 25926 Y I++ D GVP E +H ES F P A S G+ QF G YGL Sbjct: 17 YDDAIRQAADANGVPYEYLHKKIFIESSFNPDAKSPTGPLGLGQFTKATGKAYGLMTD-- 74 Query: 25927 TDDRMDPEKATRSAARHLRDLYHEF-GDWYLAIAAYNCGPG 26046 +DR+DP K+ ++A++ RDL + GD AYN G G Sbjct: 75 -EDRLDPIKSINASAQYTRDLMGTYKGDMLKVALAYNQGNG 114 >ref|NP_046572.1|ABC transporter Length = 705 Score = 48.9 bits (115), Expect = 3e-05 Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 9/208 (4%) Frame = +2 Query: 5054 LRLNRGMDPVIELDGLEVRFGDRTILKKLKATLTGRS-IGLLGPNGAGKSTLINTLLGFH 5230 + LN G DP+ R I++ + L + + ++G +G GKST +L + Sbjct: 486 VNLNIGADPM------------RYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLY 533 Query: 5231 KPTSGTARIFGRDIRTHAR-EVRSMLGYMPENDSYIASMSGVRFVRLMAELAGL-PAEHA 5404 K + + G DI + +R + Y+ EN ++ M E+ E+A Sbjct: 534 KVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGT--IKENLCMGEIFDQNEIENA 591 Query: 5405 --LERAHEAFFYVGLG-EVRYR---NLGTYSLGMKQAAKLAQAIAHGPKLLFLDEPTNGL 5566 + + HE F L + Y+ N S G KQ LA+AI H P++L LDE + + Sbjct: 592 CIMSQCHE--FICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNI 649 Query: 5567 DPPARLRMIQLIQEIRDRGDLRLILSSH 5650 DP +LI E R D +IL +H Sbjct: 650 DPD----NTKLIYETLHRMDCLIILITH 673 Score = 41.2 bits (95), Expect = 0.007 Identities = 18/32 (56%), Positives = 24/32 (75%) Frame = +2 Query: 7298 SKGMRQRVKLAQATAHDPQVVILDEPLNGLDP 7393 S G +QR+ LA+A H PQV+ILDE L+ +DP Sbjct: 620 STGQKQRLALARAILHQPQVLILDESLSNIDP 651 >ref|NP_046584.1|putative transglycosylase Length = 2285 Score = 46.6 bits (109), Expect = 2e-04 Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 3/185 (1%) Frame = +1 Query: 25609 KDKVREQVAATTSQLPLSVNDAVLGYINYFSNRGHRTLLAGLQRSGRYRPMIQRILDEEG 25788 K K+ ++ A S N G + ++ G G SG+Y I + Sbjct: 1375 KKKLMQEQAKLLKDQIKSGNITQYGIVTSTTSSGGTPSSTGGSYSGKYSSYINSAASKYN 1434 Query: 25789 VPQELIH-LAQAESGFIPRAISRKAAGGMWQFLTWRGNEYGLKQTRFTDDRMDPEKATRS 25965 V LI + Q ESGF +A S A G+ Q + G+ ++ DP + Sbjct: 1435 VDPALIAAVIQQESGFNAKARSGVGAMGLMQLMPATAKSLGV------NNAYDPYQNVMG 1488 Query: 25966 AARHLRDLYHEFG-DWYLAIAAYNCGPGSVEKAVERTGYADFWELRARGVLP-AETTNYV 26139 ++L +FG + A+AAYN GPG+V ++ G+ P ET NYV Sbjct: 1489 GTKYLAQQLEKFGGNVEKALAAYNAGPGNV--------------IKYGGIPPFKETQNYV 1534 Query: 26140 PIILA 26154 I+A Sbjct: 1535 KKIMA 1539 >ref|NP_817472.1|gp22 Length = 1576 Score = 36.2 bits (82), Expect = 0.21 Identities = 27/58 (46%), Positives = 29/58 (50%) Frame = +1 Query: 7483 GPDQRSGDPAQPGVRGGGRPDSKCPW*SQGSADADPGALRSSQSTGGAIVSAESRGGG 7656 GP G P PGV GG P K P + G+A PGA R STGG S S GGG Sbjct: 1372 GPGAPPGAP--PGVPGGQTP--KPPPGASGAAT--PGAARPQSSTGGQQPSGSSGGGG 1423 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 169,937,474 Number of Sequences: 14420 Number of extensions: 3809486 Number of successful extensions: 13560 Number of sequences better than 0.5: 10 Number of HSP's better than 0.5 without gapping: 6340 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 13518 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 14831310670 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig111 (27,818 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_053021.1|hypothetical protein 40 0.016 ref|NP_859265.1|hypothetical protein 38 0.048 ref|NP_859099.1|hypothetical protein 38 0.048 ref|NP_050557.1|hypothetical protein 38 0.048 ref|NP_049519.1|putative tail fiber protein 38 0.048 ref|NP_612899.1|hypothetical protein 37 0.082 ref|YP_024425.1|outer capsid protein 36 0.24 ref|NP_944342.1|gp33 36 0.24 >ref|YP_053021.1|hypothetical protein Length = 444 Score = 39.7 bits (91), Expect = 0.016 Identities = 58/227 (25%), Positives = 87/227 (38%), Gaps = 10/227 (4%) Frame = -3 Query: 23121 RTTDGGTTWAQTLLVDQNTGCSDLAMDPNNPRIVYAGMWQLQLS----TWNRASGGPGSG 22954 ++T+GG +W PR ++G + ++ + N SG Sbjct: 206 KSTNGGVSWVSL------------------PRFFFSGTSAVNINCVAVSGNTIVQAGASG 247 Query: 22953 -VYKSTDGGATWKRIVGHGLPAPPVGKIGLAIARRSSRVYALIETGDGVPFEDKPTQKGQ 22777 +STDGG+TW + GL G I R + +I G+ PT Sbjct: 248 YARRSTDGGSTWSNL-PRGLGMRTDGTITKMHGRGN-----VIVAGNSEQQNSDPT---T 298 Query: 22776 LWKSDNAGDTWDLVSIDRQLQGRSAYYTRCLVSPDNEHELYFMSAAFSHSLDGGKTLTPL 22597 L S N G TW +I S T C V D+ +Y M + S +GG T T L Sbjct: 299 LTISTNGGATWTGKNIGSPDGLGSRMATMCHV-VDSSVIVYGMQLHTAISRNGGSTWTWL 357 Query: 22596 P----ALPGGDNHDMWIDPLNGDRLAVANDSG-FSISVNRGKTWNRV 22471 P + G N M GD + +G ++S N+G +W+ V Sbjct: 358 PSGLNSGSGSSNTTMLCMDSVGDTIVAGTYNGSAAVSYNKGLSWSAV 404 Score = 37.0 bits (84), Expect = 0.11 Identities = 78/265 (29%), Positives = 101/265 (38%), Gaps = 27/265 (10%) Frame = -3 Query: 23118 TTDGGTTWAQTLLVDQN------TGCSDLAMDPNNPRIVYAGMWQLQLSTWNRASGGPGS 22957 T+ GG T Q V N T S A + P +V AG L L +N A Sbjct: 107 TSFGGFTETQVASVTVNQAQLAWTNVSTFAAS-SPPILVRAGN-NLLLLAYNSAY----- 159 Query: 22956 GVYKSTDGGATWKRI---VGHGLPAPPVGKIGLAIARRSSRVYALIETGDGVPFEDKPTQ 22786 ST+GGATW + +G G+P+ G A S ++ DG Sbjct: 160 ----STNGGATWNSLPQGLGTGVPSFQATPKGAA-----SDGSTVVVVYDG--------- 201 Query: 22785 KGQLWKSDNAGDTWDLVSIDR-QLQGRSAYYTRCLVSPDNEHELYFMSAAFSHSLDGGKT 22609 G KS N G +W VS+ R G SA C+ N S S DGG T Sbjct: 202 -GYSAKSTNGGVSW--VSLPRFFFSGTSAVNINCVAVSGNTIVQAGASGYARRSTDGGST 258 Query: 22608 LTPLPALPGGDNHDMWIDPLNG-DRLAVANDS--------GFSISVNRGKTWNRVQL--- 22465 + LP G D I ++G + VA +S +IS N G TW + Sbjct: 259 WSNLPR-GLGMRTDGTITKMHGRGNVIVAGNSEQQNSDPTTLTISTNGGATWTGKNIGSP 317 Query: 22464 -----PIAQMYHVTVDNQVPYFVYG 22405 +A M HV VD+ V VYG Sbjct: 318 DGLGSRMATMCHV-VDSSV--IVYG 339 >ref|NP_859265.1|hypothetical protein Length = 645 Score = 38.1 bits (87), Expect = 0.048 Identities = 35/102 (34%), Positives = 43/102 (42%), Gaps = 7/102 (6%) Frame = -2 Query: 21253 PHGRAESAVRRGHRLLPG--GST-ERGAARDSRSFGPHGQEPESVHPAGHQSRVVGFPIH 21083 P G RG + +PG G T ERG D GP G++ + PAG Q G Sbjct: 293 PRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQ----GPKGE 348 Query: 21082 RDQASPSAHQSRVCARDPGGRRGVAARPWPA----ERSASGP 20969 R +A P Q + AR G G P PA ER +GP Sbjct: 349 RGEAGP---QGPMGARGERGETGPRGEPGPAGPRGERGETGP 387 Score = 35.4 bits (80), Expect = 0.31 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Frame = +1 Query: 1117 VVGTVTDPSGGALTGAAVTLT------NAGTGERRQTLSGSGGDYQFLNLVPGTYRVQVE 1278 V GT+ P G A++GA +TLT +A +G ++ GG Y + + PG Y V V Sbjct: 5 VSGTLKSPDGEAISGANITLTALTVSPDALSGTSASAVTREGG-YYGMTMDPGEYAVSVT 63 Query: 1279 RTGFKRAAHENLEVNISGTVRADISLQLGDVTQTVEVQAAAPLL 1410 G K A + V I GT + ++L + VEV LL Sbjct: 64 VKG-KTAVYG--RVRIEGT-ESTVTLNMLLRRSLVEVSIPGELL 103 >ref|NP_859099.1|hypothetical protein Length = 645 Score = 38.1 bits (87), Expect = 0.048 Identities = 35/102 (34%), Positives = 43/102 (42%), Gaps = 7/102 (6%) Frame = -2 Query: 21253 PHGRAESAVRRGHRLLPG--GST-ERGAARDSRSFGPHGQEPESVHPAGHQSRVVGFPIH 21083 P G RG + +PG G T ERG D GP G++ + PAG Q G Sbjct: 293 PRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQ----GPKGE 348 Query: 21082 RDQASPSAHQSRVCARDPGGRRGVAARPWPA----ERSASGP 20969 R +A P Q + AR G G P PA ER +GP Sbjct: 349 RGEAGP---QGPMGARGERGETGPRGEPGPAGPRGERGETGP 387 Score = 35.4 bits (80), Expect = 0.31 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Frame = +1 Query: 1117 VVGTVTDPSGGALTGAAVTLT------NAGTGERRQTLSGSGGDYQFLNLVPGTYRVQVE 1278 V GT+ P G A++GA +TLT +A +G ++ GG Y + + PG Y V V Sbjct: 5 VSGTLKSPDGEAISGANITLTALTVSPDALSGTSASAVTREGG-YYGMTMDPGEYAVSVT 63 Query: 1279 RTGFKRAAHENLEVNISGTVRADISLQLGDVTQTVEVQAAAPLL 1410 G K A + V I GT + ++L + VEV LL Sbjct: 64 VKG-KTAVYG--RVRIEGT-ESTVTLNMLLRRSLVEVSIPGELL 103 >ref|NP_050557.1|hypothetical protein Length = 645 Score = 38.1 bits (87), Expect = 0.048 Identities = 35/102 (34%), Positives = 43/102 (42%), Gaps = 7/102 (6%) Frame = -2 Query: 21253 PHGRAESAVRRGHRLLPG--GST-ERGAARDSRSFGPHGQEPESVHPAGHQSRVVGFPIH 21083 P G RG + +PG G T ERG D GP G++ + PAG Q G Sbjct: 293 PRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQ----GPKGE 348 Query: 21082 RDQASPSAHQSRVCARDPGGRRGVAARPWPA----ERSASGP 20969 R +A P Q + AR G G P PA ER +GP Sbjct: 349 RGEAGP---QGPMGARGERGETGPRGEPGPAGPRGERGETGP 387 Score = 35.4 bits (80), Expect = 0.31 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Frame = +1 Query: 1117 VVGTVTDPSGGALTGAAVTLT------NAGTGERRQTLSGSGGDYQFLNLVPGTYRVQVE 1278 V GT+ P G A++GA +TLT +A +G ++ GG Y + + PG Y V V Sbjct: 5 VSGTLKSPDGEAISGANITLTALTVSPDALSGTSASAVTREGG-YYGMTMDPGEYAVSVT 63 Query: 1279 RTGFKRAAHENLEVNISGTVRADISLQLGDVTQTVEVQAAAPLL 1410 G K A + V I GT + ++L + VEV LL Sbjct: 64 VKG-KTAVYG--RVRIEGT-ESTVTLNMLLRRSLVEVSIPGELL 103 >ref|NP_049519.1|putative tail fiber protein Length = 645 Score = 38.1 bits (87), Expect = 0.048 Identities = 35/102 (34%), Positives = 43/102 (42%), Gaps = 7/102 (6%) Frame = -2 Query: 21253 PHGRAESAVRRGHRLLPG--GST-ERGAARDSRSFGPHGQEPESVHPAGHQSRVVGFPIH 21083 P G RG + +PG G T ERG D GP G++ + PAG Q G Sbjct: 293 PRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQ----GPKGE 348 Query: 21082 RDQASPSAHQSRVCARDPGGRRGVAARPWPA----ERSASGP 20969 R +A P Q + AR G G P PA ER +GP Sbjct: 349 RGEAGP---QGPMGARGERGETGPRGEPGPAGPRGERGETGP 387 Score = 35.4 bits (80), Expect = 0.31 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Frame = +1 Query: 1117 VVGTVTDPSGGALTGAAVTLT------NAGTGERRQTLSGSGGDYQFLNLVPGTYRVQVE 1278 V GT+ P G A++GA +TLT +A +G ++ GG Y + + PG Y V V Sbjct: 5 VSGTLKSPDGEAISGANITLTALTVSPDALSGTSASAVTREGG-YYGMTMDPGEYAVSVT 63 Query: 1279 RTGFKRAAHENLEVNISGTVRADISLQLGDVTQTVEVQAAAPLL 1410 G K A + V I GT + ++L + VEV LL Sbjct: 64 VKG-KTAVYG--RVRIEGT-ESTVTLNMLLRRSLVEVSIPGELL 103 >ref|NP_612899.1|hypothetical protein Length = 678 Score = 37.4 bits (85), Expect = 0.082 Identities = 35/102 (34%), Positives = 43/102 (42%), Gaps = 7/102 (6%) Frame = -2 Query: 21253 PHGRAESAVRRGHRLLPG--GST-ERGAARDSRSFGPHGQEPESVHPAGHQSRVVGFPIH 21083 P G RG + +PG G T ERG D GP G++ + PAG Q G Sbjct: 293 PRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQ----GPKGE 348 Query: 21082 RDQASPSAHQSRVCARDPGGRRGVAARPWPA----ERSASGP 20969 R +A P Q + AR G G P PA ER +GP Sbjct: 349 RGEAGP---QGPMGARGERGDTGPRGEPGPAGPRGERGETGP 387 Score = 35.4 bits (80), Expect = 0.31 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Frame = +1 Query: 1117 VVGTVTDPSGGALTGAAVTLT------NAGTGERRQTLSGSGGDYQFLNLVPGTYRVQVE 1278 V GT+ P G A++GA +TLT +A +G ++ GG Y + + PG Y V V Sbjct: 5 VSGTLKSPDGEAISGANITLTALTVSPDALSGTSASAVTREGG-YYGMTMDPGEYAVSVT 63 Query: 1279 RTGFKRAAHENLEVNISGTVRADISLQLGDVTQTVEVQAAAPLL 1410 G K A + V I GT + ++L + VEV LL Sbjct: 64 VKG-KTAVYG--RVRIEGT-ESTVTLNMLLRRSLVEVSIPGELL 103 >ref|YP_024425.1|outer capsid protein Length = 460 Score = 35.8 bits (81), Expect = 0.24 Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 9/135 (6%) Frame = -3 Query: 14865 SPNDGVSSWGTLTVVAESPKSPAVIWAGTDD---------GNLQISRNGGEVWKNVAANM 14713 S N GV+ W L P + +++ G D GN ISRN G W + N Sbjct: 312 SRNGGVT-WSALPRYLGMPTNTSIVAIGVSDTAIVVGGNNGNCAISRNDGVTWSALPLNF 370 Query: 14712 PGLPKETYVSRIVTSESGDGVAYASFDGHRGNDYEPYLYVTTDYGETWKSIGTGLPKATG 14533 G+P + + + + +G G + YL ++ D G TW+ L Sbjct: 371 -GVPIGSGIRDRSIAGASNGTFLVGLSGSPISGNNGYLALSYDDGVTWQQPPRYLGIPNA 429 Query: 14532 TVHAIREDPRNTNVL 14488 A+ RN ++L Sbjct: 430 GYGALVNTIRNIDIL 444 >ref|NP_944342.1|gp33 Length = 472 Score = 35.8 bits (81), Expect = 0.24 Identities = 49/180 (27%), Positives = 69/180 (38%), Gaps = 17/180 (9%) Frame = +1 Query: 1126 TVTDPSGGA--------------LTGAAVTLTNAGTGERRQTLSGSGGDYQFLNLVPGTY 1263 T TDP+GG LTG VTLTNA + TL+G+ L LV T+ Sbjct: 124 TSTDPAGGGYVPGYQYGTTALTGLTGGTVTLTNAQAAKATVTLAGA--LTSALTLVVPTW 181 Query: 1264 RVQVERTGFKRAAHENLEVNISGTVRADISLQLGDVTQTVEVQAAAPLLRTEDANLSQVV 1443 H + N +G A I G + A P++ + AN+ QV Sbjct: 182 -----------LKHWTVTNNTTGAFAATIKTAAGTGIAIPQNGAPTPVV-GDGANIVQVG 229 Query: 1444 SSRAVEDLPVNGRNILNLTALVPGVVPQGTTDGNAITGKN---IFAAGNYQIGGGAANQG 1614 + A G + L G + + T+ G+ N I+ +GN GGGA G Sbjct: 230 ENIAQATRLTQGVRLDQLYGTAKGFL-RATSSGSTTVPPNVTTIYVSGN---GGGAGGGG 285 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 145,650,943 Number of Sequences: 14420 Number of extensions: 3272780 Number of successful extensions: 11642 Number of sequences better than 0.5: 8 Number of HSP's better than 0.5 without gapping: 5725 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11624 length of database: 3,019,461 effective HSP length: 112 effective length of database: 1,404,421 effective search space used: 12864496360 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig112 (31,475 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_835731.1|similar to RNA polymerase ECF-type sigma factor 62 5e-09 ref|YP_024499.1|putative helicase 43 0.002 ref|NP_818160.1|gp87 37 0.12 ref|YP_024827.1|Pas41 37 0.12 ref|NP_818571.1|gp33 37 0.16 ref|NP_818335.1|gp34 36 0.20 ref|NP_943806.1|gp28 35 0.45 >ref|NP_835731.1|similar to RNA polymerase ECF-type sigma factor Length = 199 Score = 61.6 bits (148), Expect = 5e-09 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 12/185 (6%) Frame = +1 Query: 4705 EAAWEELVRQHTRQVYGLCFRFTNSAQEAQDLTQEVFLRVFKTIKTFRSTEG-SFGTWLA 4881 E +E L ++ ++ ++T S E +D+ Q+ FLR+ + ++ EG SF T++ Sbjct: 22 EIRYEVLYSRYAERLKNFGKKYTKSEHEIEDMVQDTFLRLLR-FDSYSVVEGASFATYIY 80 Query: 4882 RVTRNLLIDHYR-------RTRQQRVTDSIEDQLPVLEQVGTSGAARPDQALAGREASEI 5040 V ++++I YR R + +T D +E SG D+ + A E+ Sbjct: 81 TVFKSVVITRYRYNSRRGPRIYMEEITFGDRDTPVEIE----SGEPLLDEQYELKRAVEV 136 Query: 5041 LQATLQKLSPDLREAVILRDLQEMEYR----EIADVLDIPEGTVKSRINRGRAELARLLR 5208 +Q L+K I++ E++ + +A+ +IP GTVKSRINR R L L Sbjct: 137 IQEELEKGDNPFYN--IMKQYMELKEKCAMQALAEKNNIPIGTVKSRINRARHRLREALV 194 Query: 5209 KQKLV 5223 K+K++ Sbjct: 195 KKKVI 199 >ref|YP_024499.1|putative helicase Length = 582 Score = 43.1 bits (100), Expect = 0.002 Identities = 18/57 (31%), Positives = 38/57 (66%) Frame = -1 Query: 28184 RREIEQSLRAGKIRAVVATNALELGIDIGSLDAVVMAGYPGTIASSWQRAGRAGRRQ 28014 RRE +R+GK++ ++AT+ ++ G+DI ++A+++ ++ + QR GRA R++ Sbjct: 484 RREKLNDMRSGKLKVMIATSLIDEGVDISGINALILGAGGKSLRQTLQRIGRALRKK 540 >ref|NP_818160.1|gp87 Length = 1237 Score = 37.0 bits (84), Expect = 0.12 Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 8/137 (5%) Frame = +1 Query: 11359 DAPVDQGIAQ-RSVSVCVRLPSVPTPRNSSSKVCRGTGLPPR---PTAGIPA---QRSIG 11517 DAP D G A + +V + P +P S + +PP G+P ++ I Sbjct: 437 DAPADDGSAGGQEFTVPEQAPELPQDEMSQLQDSGPQSVPPEVIDDILGLPPGTLEQLIA 496 Query: 11518 LESG*PVGTQSSGWSNGARSKRTRSSVSDLRNATRSA-RSDAASGIATISTGRSGESGKS 11694 E G G S ++R R + D A SA + DAA+ A + G +G +G Sbjct: 497 EELGQAGGGTPPQGSPPQLARRRRQAAEDPTGAAESADQGDAAAAAAPAAAGAAGSAGAI 556 Query: 11695 PPRA*KSTTCSSVAWPP 11745 PP +SVA PP Sbjct: 557 PPPG-----SASVAPPP 568 >ref|YP_024827.1|Pas41 Length = 165 Score = 37.0 bits (84), Expect = 0.12 Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = -3 Query: 1854 DRDPAR*SRSGARQEGPGRGQSPPGRLGRQEIREPRTSPAGLDPGGQHRPH-ARRR*VRI 1678 +R P R R+G RQ PGR PGR GR+ + P G P RP ARR Sbjct: 105 ERGPRRRDRAGRRQRRPGR----PGRRGRRGLHPPDRGRRGSTP----RPEPARRTPTGT 156 Query: 1677 PPRL 1666 PP+L Sbjct: 157 PPKL 160 >ref|NP_818571.1|gp33 Length = 2047 Score = 36.6 bits (83), Expect = 0.16 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Frame = -2 Query: 16030 PAVFMAAFPRRTAPGTAPLASGALFRRVLLSGMPR--VARLGGEDCALGSGGAALRDPAG 15857 P F+AA P T PGT G + LLS +P+ + +G + LG +A+ D Sbjct: 1584 PNTFVAARPGATTPGTGGRTRGEISDEDLLSRVPKGTYSAVGNLEQGLGDCSSAVEDLVN 1643 Query: 15856 LDDSARPDARPGLGTHAQGDGRDYAGLPRGRG 15761 + DS RP + T + G RG G Sbjct: 1644 IMDS-RPTGGRSMSTANAAEWLASRGFVRGTG 1674 >ref|NP_818335.1|gp34 Length = 1599 Score = 36.2 bits (82), Expect = 0.20 Identities = 29/121 (23%), Positives = 54/121 (44%) Frame = -3 Query: 14496 RHGARAALGRYQVADPAGCRRCAHRFANAHSQARSEQHRVARCLAGQSRESRPYRDAAGQ 14317 R+ + A+GR+Q + NA + R +RVA SR +R + + Sbjct: 18 RNAEKEAVGRFQKIGRESADAMSKEIENAAPRVRRAMNRVADATLSSSRAAREAKKSQDA 77 Query: 14316 QPAPAVRVGELSEGQSGDREDHRE*RDQPAQLRVGKGELASQGFQHRVQRLAIVEVEDVD 14137 + +V EL EGQ G++ + A R+ K E+A+Q + + Q+ +E+ + Sbjct: 78 LAKSSQKVLEL-EGQIGEQ--------RKASQRLRKSEIANQRLETKAQKARNEALEEYN 128 Query: 14136 Q 14134 + Sbjct: 129 R 129 >ref|NP_943806.1|gp28 Length = 1932 Score = 35.0 bits (79), Expect = 0.45 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = +3 Query: 21492 NGGAGGGSPTMVNVPGLIVKGGPKDAE 21572 NGG GGGS T V+ P ++ GGP+ AE Sbjct: 1895 NGGFGGGSNTTVHAPITVIGGGPETAE 1921 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 156,823,070 Number of Sequences: 14420 Number of extensions: 3330986 Number of successful extensions: 11965 Number of sequences better than 0.5: 7 Number of HSP's better than 0.5 without gapping: 5879 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11939 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 14425430378 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig113 (32,142 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_025041.1|putative transposase B 36 0.27 >ref|YP_025041.1|putative transposase B Length = 280 Score = 35.8 bits (81), Expect = 0.27 Identities = 46/185 (24%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Frame = -1 Query: 3882 QRPPYLAAD----GPNAVWNIDY-------KGWFRCGDGTRVDPLTISDGFSRYLLRCQH 3736 QRP L D G N W D GW TI D SR ++ Sbjct: 99 QRPNLLKQDFSTTGLNQKWTADMTYIQTKRNGWCYLS--------TIMDLHSRRIIGYSF 150 Query: 3735 VEQTGYELTRAVFVATFQEFGLPG--AIHSDNGTPFASVAPGGLSRLSIWFVKLGIVVER 3562 ++ +L + + + G IH+D G+ + S + +L I Sbjct: 151 SKKMDTDLVLKTLESAVKNRTITGDLIIHTDLGSQYTS------DDYNQRLTELHIRHSY 204 Query: 3561 SRPACPQDNGRHERMHRTLKAATAKPP------QATVRLQQQAFHAFQREYNEERPHEAL 3400 SR CP DN E H +LK P + + + HAF YN +R H +L Sbjct: 205 SRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAF---YNRKRIHSSL 261 Query: 3399 DNKTP 3385 +TP Sbjct: 262 GYQTP 266 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 160,602,565 Number of Sequences: 14420 Number of extensions: 3463329 Number of successful extensions: 12048 Number of sequences better than 0.5: 1 Number of HSP's better than 0.5 without gapping: 5873 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12023 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 14734010600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig114 (36,613 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_817477.1|gp27 54 8e-07 ref|NP_817998.1|gp25 53 2e-06 ref|YP_003955.1|hypothetical protein 50 1e-05 ref|NP_945090.1|gp59 47 1e-04 ref|NP_958267.1|hypothetical protein 36 0.23 ref|NP_542342.1|unknown 35 0.40 ref|YP_164321.1|hypothetical protein 35 0.40 >ref|NP_817477.1|gp27 Length = 946 Score = 54.3 bits (129), Expect = 8e-07 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 10/184 (5%) Frame = -2 Query: 32976 KPEGFREVSLKDVAPVV--WSEEKSARLKEFAISAMQTLQVPGAAMAIVQGGRVVYAEGL 32803 +P +EVS K+ P + ++ + E M T PG + V + Y + Sbjct: 53 EPGPVKEVSTKEFVPTEGPMPSDLTSVIDEIVAEGMATGAGPGVGL-YVTSPQGYYLKTY 111 Query: 32802 GVRDLGRGEPVTPRTRFMIGSSTKALTSLMMAKLVEQGKLSWSTPVVDL-LPDFALADAN 32626 G+ G P+TP F IGS+TK T+ + ++ G +S + P+F L+D + Sbjct: 112 GISTTG--VPLTPDMHFRIGSATKPFTATAVLMAIQDGLISLEDTIDQFDTPEFKLSDID 169 Query: 32625 VTRRLEIRHTVSASTGM--PRQDLEF-----VFKYSGVTPEDRIAQMKTMRPTTGFGETF 32467 ++IRH + +G+ ++DL F +F SG + + +K+ + G F Sbjct: 170 RANEIKIRHLMMMRSGVFNEQRDLTFMLNFALFPKSGFSDQSWFNVLKSHKLVRDPGTEF 229 Query: 32466 QYSN 32455 +Y N Sbjct: 230 EYVN 233 >ref|NP_817998.1|gp25 Length = 941 Score = 53.1 bits (126), Expect = 2e-06 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 12/194 (6%) Frame = -2 Query: 33000 LTEAIGSWKPEGFREVSLKDVAPVVWSEEKS--ARLKEFAISAMQTLQVPGAAMAIVQG- 32830 L +A +P EV+ +V P + S A++ + M PG + I Sbjct: 45 LDQAGNESEPSAVVEVATDEVVPTESPMDPSLTAQIDQIVAQGMADGAGPGVGLYITSPH 104 Query: 32829 GRVVYAEGLGVRDLGRGEPVTPRTRFMIGSSTKALTSLMMAKLVEQGKLSWSTPVVDL-L 32653 G+ + G+ G P+TP F IGS+TK T+ + ++ G LS + Sbjct: 105 GQYLQTYGISTA----GVPLTPDMHFRIGSATKPFTATAVLMAIQDGLLSLEDTIDQFDT 160 Query: 32652 PDFALADANVTRRLEIRHTVSASTGM--PRQDLEFVFKYSGVTPEDRIAQMKTMRPTTGF 32479 P+F L+D + +++IRH + +G+ ++DL F+ ++ + P+ ++ R T Sbjct: 161 PEFKLSDIDQADKIKIRHLMMMRSGVFNEQRDLSFMLNFA-LMPKSELSDSAWFRILTSH 219 Query: 32478 ------GETFQYSN 32455 G F+Y N Sbjct: 220 KSVREPGTGFEYVN 233 >ref|YP_003955.1|hypothetical protein Length = 59 Score = 50.4 bits (119), Expect = 1e-05 Identities = 20/34 (58%), Positives = 28/34 (82%) Frame = +3 Query: 2565 MAKEKFDRSKPHVNIGTIGHIDHGKTTLTAAITK 2666 M+KEKF+R+KP +N+G IGH+DHGKT L A+ + Sbjct: 1 MSKEKFERTKPVLNVGIIGHVDHGKTELAKALLR 34 >ref|NP_945090.1|gp59 Length = 429 Score = 47.4 bits (111), Expect = 1e-04 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 17/144 (11%) Frame = -1 Query: 10315 ISGWLASLFGRRRFFLLCIVLFTVSSVLCGSAPS-----LG---LLIVFRAIQGVGGGGL 10160 + G +A GRR + I L T + + G AP+ LG +++V R +QG GG Sbjct: 81 VIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLLQGFSAGGE 140 Query: 10159 QPIAQAILADTFPPQKRG---------LAFALYGITAVMAPTIGPTLGGWITDNYSWRWI 10007 A A L + P ++ G + FA+ + +V+A I L +++ WR Sbjct: 141 MGGATAYLRERVPAERHGYYTSWIQASIGFAII-LASVLAVFIVKCLDEQQIESWGWRIP 199 Query: 10006 FYINLPIGMMTLFLVHRLVEDPPY 9935 F + L +G + +++ RL DP + Sbjct: 200 FLLGLGLGPVGIYIRSRL-NDPGF 222 Score = 38.1 bits (87), Expect = 0.062 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%) Frame = -1 Query: 10342 LVSNAIVL---PISGWLASLFGRRRFFLLCIVLFTVSS----VLCGSAPSLGLLIVFRAI 10184 LV +IVL P+ G L+ LFGRR F +++ V++ + +AP L L+VF+ + Sbjct: 286 LVGASIVLFVTPLIGHLSDLFGRRWFLAGALLVAIVAAYPLFAMLNAAPGLKTLLVFQVV 345 Query: 10183 QGVGGGGLQPIAQAILADTFP 10121 G+ + A L+D FP Sbjct: 346 FGLVIASYEGPILAALSDMFP 366 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 36.2 bits (82), Expect = 0.23 Identities = 38/118 (32%), Positives = 46/118 (38%), Gaps = 10/118 (8%) Frame = -3 Query: 14336 RSQQRPPAEPRRKISRPSAPYTKSPRTRAPPLELQPGVERTVEPPAAATDKASGRQPDPP 14157 R+ RP A PRR P T+ PRTRAP PG V P A A+ P+ Sbjct: 60 RAPSRPAAGPRR---HPPVARTR-PRTRAPECAPDPG--PAVHPAAPGCAPAAPAAPEYA 113 Query: 14156 PSIN-RHRKVARKTGRLRPDAPTPCRHPNTRSPRQAVQTFTE---------RPDPVHR 14013 P++ R + R LR AP P V+T E RPDP R Sbjct: 114 PALRPRAPECDRGAHHLRTRAPRTRTRAVPLGPGARVRTPVEDRRRTRRRRRPDPRRR 171 >ref|NP_542342.1|unknown Length = 164 Score = 35.4 bits (80), Expect = 0.40 Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 13/140 (9%) Frame = -1 Query: 19855 WSRLSAPTP---ASPAPIRTSAPDSTPTFWSPGSNRSAAAPVSRTLPRSACPQRDGCRRN 19685 W+ PTP +SP PI + D + S + RSA P SR P+S Sbjct: 4 WATWMMPTPTTCSSPLPISRTR-DCARSSRSAPTGRSA--PWSRRSPKSP---------R 51 Query: 19684 PANSRSASPRAPLR*TASCWQEII-SAPWSPTGIRLRAALW---------RASGRPNSGS 19535 P+ SR A+PR W + S P+SP AALW S R + S Sbjct: 52 PSASRLANPR---------WSSLARSFPFSPPTRNTSAALWPRDRSCSSMAPSIRKTAAS 102 Query: 19534 PPTPCATGAAIPPWFASSCG 19475 P A + I P FA+ G Sbjct: 103 PIARSAATSCIRPCFANRRG 122 >ref|YP_164321.1|hypothetical protein Length = 604 Score = 35.4 bits (80), Expect = 0.40 Identities = 68/238 (28%), Positives = 85/238 (35%), Gaps = 28/238 (11%) Frame = -3 Query: 11345 RGRRGAGDGSPGQLQESRGRRAALQAACGQ---GGDLATIVRTGGASGRRRQGYRGYADR 11175 RG R AG G P Q LQA C Q GG GGA + RG + Sbjct: 343 RGLRDAGAGLPHQ-----AGCGYLQADCLQDRRGGP-------GGAGADQPAARRGVQGQ 390 Query: 11174 LGERSAPQRGGRGSCDSTGAGQSPTGGSLHPIG--PDRAAAGCH--QPVEGQV------- 11028 G R+ +RG +G + G P+ P R A C + EGQV Sbjct: 391 AGRRTVERRGLQG---ADAGGIRARRDDQEPVRRLPRRRAGVCRADRRREGQVRRLRGPR 447 Query: 11027 -----FGSETRAAGGLTCPSQVEPEL-YHHRGSGGWDHRQKDRGSGTERIAWPATHGHCS 10866 G R AG P L + H G G ++ R G R H Sbjct: 448 QGRVGQGGRARCAG---------PRLRFDHSGVG-----EQGRCQGQGRADQDGGGAHQG 493 Query: 10865 TRRCVGDRQFQGNPAPQDAARPACEVQRGRVQ-PGVPG-------THYRHRGRQRVAL 10716 G + QG+PA Q +RG VQ GVPG + R RGR+R A+ Sbjct: 494 VEVLGGRGRLQGHPAGQP--------ERGAVQHVGVPGPGRSLARSGQRQRGRRRNAI 543 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 179,143,701 Number of Sequences: 14420 Number of extensions: 3850460 Number of successful extensions: 13941 Number of sequences better than 0.5: 7 Number of HSP's better than 0.5 without gapping: 6407 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 13901 length of database: 3,019,461 effective HSP length: 114 effective length of database: 1,375,581 effective search space used: 16629398709 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig115 (30,655 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_006919.1|putative RNaseH ribonuclease 92 2e-18 ref|NP_803721.1|ORF155 65 3e-10 ref|NP_945089.1|gp58 55 3e-07 ref|NP_818251.1|gp200 50 2e-05 ref|NP_996598.1|hypothetical protein predicted by GeneMark 37 0.089 ref|YP_024843.1|Pas57 35 0.44 >ref|YP_006919.1|putative RNaseH ribonuclease Length = 158 Score = 92.4 bits (228), Expect = 2e-18 Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 11/146 (7%) Frame = +3 Query: 22500 TDGACLGNPGPGGWSAILRFEEQKKELW---GCEKQTTNNRMELTAAIEGLR--ALREKC 22664 TDGAC NPGPG W I+ +++ L G +TTNN MELTA +E LR ++ Sbjct: 8 TDGACKSNPGPGAWGFIV-YDDNDDRLGSKSGYSPKTTNNEMELTAIVEALRWSVKKDNR 66 Query: 22665 QVEVVTDSEYVLKGITTWIDGWKRKGWMTAAKKPVINQDLW----KLLDEQVNRHQA--T 22826 + + TDS Y G+ +W+ W+RKGW A + +N +LW KL + +N H T Sbjct: 67 PIVIYTDSAYCKNGMESWMFSWQRKGWKKADGEVPLNLELWQEAFKLTQQYINFHNTNPT 126 Query: 22827 WTWTKGHASHADNNRCDELATRAARE 22904 + KGH+ + N D L E Sbjct: 127 FIKVKGHSGISGNEAVDALCNTVITE 152 >ref|NP_803721.1|ORF155 Length = 482 Score = 65.5 bits (158), Expect = 3e-10 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Frame = +3 Query: 22602 TNNRMELTAAIEGLRALREKC--QVEVVTDSEYVLKGITTWIDGWKRKGWMTAAKKPVIN 22775 TNN ELTAAIE + E ++ ++ DSEYV KG+T ++ W + W+ + PV N Sbjct: 73 TNNTGELTAAIEAFKIAHEADAPRLTMLMDSEYVRKGMTAYLPKWIKSNWIKSDGTPVAN 132 Query: 22776 QDLWKLLDEQVNRHQAT-----WTWTKGHASHADNNRCD 22877 QDLWK + E + + T W +GH N + D Sbjct: 133 QDLWKQMVELKAKWEETNKPLSIQWVRGHNGDIGNEKAD 171 >ref|NP_945089.1|gp58 Length = 297 Score = 55.5 bits (132), Expect = 3e-07 Identities = 63/187 (33%), Positives = 87/187 (46%), Gaps = 8/187 (4%) Frame = -3 Query: 10766 SFTRAAERLFLTQPAVTMQVKNLEEELGLRLFDRTGQRIVLTPAGRILDDYTKRIAALCG 10587 +FTRAAE L + Q AV+ QV LE LG LF R + + LT AG+ Y R+ A+ Sbjct: 23 NFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ---QYADRVHAILA 79 Query: 10586 D-AERDLAVLKGETRGRLALG-ASTTIAQYLLPRLAGEFLAAFPAIQFSI-ISGNTSDIV 10416 D E V+K +T L + AS T +L R+A EF A P + I + ++ Sbjct: 80 DCVEATALVMKEQTPHSLTIACASGTATLFLADRIA-EFSAEHPEVSVRILVREGVFNLN 138 Query: 10415 AALADGRIGLGLIE-----GPAGRSDVKCEPFVEDEIVLVTPPAHEFAAGGELDPAALKA 10251 AA D IG+ I G AG + V ED P F AG + P L Sbjct: 139 AAEFD--IGVYYIRDVPPPGIAGTAIV-----AEDVHAYCAP---TFLAGRRVPPQDLME 188 Query: 10250 ASIILRE 10230 A++++ E Sbjct: 189 ATLLVAE 195 >ref|NP_818251.1|gp200 Length = 113 Score = 49.7 bits (117), Expect = 2e-05 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Frame = -1 Query: 14026 DIRIDTFCSSGPGGQSVNTTYSAVRITHLPTGLVVSCQDEKSQIKNRAKA-ERVLRSRLY 13850 D ++T G GGQ+ NT +AVRI H P+G V Q+E+SQ++N+ A R+ S + Sbjct: 8 DCVVETKRGHGNGGQNRNTRDTAVRIVHPPSGAVGESQEERSQLQNKKTAFRRMAESSKF 67 Query: 13849 ELELEKQQA 13823 +L L++Q A Sbjct: 68 QLWLKRQVA 76 >ref|NP_996598.1|hypothetical protein predicted by GeneMark Length = 365 Score = 37.4 bits (85), Expect = 0.089 Identities = 54/178 (30%), Positives = 64/178 (35%), Gaps = 4/178 (2%) Frame = -2 Query: 29196 AAHRGVLQAAGRGTAAREFSEGRPTRRPATAPDAGIHSGQAGYRGTAAGPHRMXXXXXXX 29017 A +RG A RGTA + R ATA G + AGYRGTA +R Sbjct: 156 AGYRGTATAGYRGTATAGY------RGTATAGYRG--TATAGYRGTATAGYRGTATAGYR 207 Query: 29016 XXXXXXXXXXGACPPFQARRGRPPAGHHLASAQALRADF*VGPHG-AAQGHRHWAAA--R 28846 RG AG+ + R G G A G+R A A R Sbjct: 208 GTAT------------AGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYRGTATAGYR 255 Query: 28845 GDHRARCRGTARV-FAGVPPAGFFLFARWGARRHHRRPGRSQCGGRALAAESRPAPRG 28675 G A RGTA +G AG+ A G G + GG A A ES A G Sbjct: 256 GTATAGYRGTATAGESGTATAGYRGTATAG------ESGTATAGGTATAGESGTATAG 307 >ref|YP_024843.1|Pas57 Length = 305 Score = 35.0 bits (79), Expect = 0.44 Identities = 21/62 (33%), Positives = 32/62 (51%) Frame = +2 Query: 12065 SAVSVGSHTATVTSCAPPAFNASVMSNVNGSYPPSCVPTALPLTNTSARQSTAPKCSSSR 12244 S +S G ++T CAPP+ + S ++ + S S +A T+ SA ST+ SSS Sbjct: 175 SRISFGGEVYSLT-CAPPSTSTSASASASTSASASASTSASASTSASASASTSASASSSA 233 Query: 12245 DP 12250 P Sbjct: 234 SP 235 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 137,577,345 Number of Sequences: 14420 Number of extensions: 2813167 Number of successful extensions: 10425 Number of sequences better than 0.5: 6 Number of HSP's better than 0.5 without gapping: 5546 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10383 length of database: 3,019,461 effective HSP length: 113 effective length of database: 1,390,001 effective search space used: 14044570104 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig116 (36,485 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_958267.1|hypothetical protein 46 2e-04 ref|YP_024725.1|gp52 39 0.028 ref|NP_944330.1|gp22 37 0.14 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 46.2 bits (108), Expect = 2e-04 Identities = 44/144 (30%), Positives = 49/144 (34%), Gaps = 2/144 (1%) Frame = -2 Query: 13633 RMRLHRTQRMRPS-PRSGCARHRAADAPVTAQRMHPPPRSGCARHRTADAPSPRSGCARA 13457 R R +R RP R+ R RA R P P G AR R+ D P P C RA Sbjct: 2 RFDARRLRRARPPHTRTPAPRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRA 61 Query: 13456 ADVPVTTQRMRPHRTQRMRPYPAADAPSPRSGCARHRTANAAVTARSGCARHRTANAAVT 13277 P R P R RP A +P G A H A A + A Sbjct: 62 PSRPAAGPRRHP-PVARTRPRTRAPECAPDPGPAVHPAAPGCAPAAPAAPEYAPALRPRA 120 Query: 13276 ARSGCAPHH-AADAPVTPQRIRPL 13208 HH AP T R PL Sbjct: 121 PECDRGAHHLRTRAPRTRTRAVPL 144 Score = 41.6 bits (96), Expect = 0.006 Identities = 65/251 (25%), Positives = 85/251 (33%), Gaps = 47/251 (18%) Frame = -3 Query: 13767 RLHRTQRMRPSPRSGCARHRAAGAP-------------------------------SPHA 13681 R HR R RP P G AR R+ P +P Sbjct: 28 RAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRAPSRPAAGPRRHPPVARTRPRTRAPEC 87 Query: 13680 ADEPSPCSGCAFTARSGCAFTARSG-----CARHRAADAPVTAQRMRPSPRRGCTRHRAA 13516 A +P P A GCA A + R RA + A +R R TR RA Sbjct: 88 APDPGP---AVHPAAPGCAPAAPAAPEYAPALRPRAPECDRGAHHLRTRAPR--TRTRAV 142 Query: 13515 D--------APVTARRMRPHHAADAPAQRMCPSPRSGCALTARSECARTPQRMRPHHAAD 13360 PV RR P +R+ PR G + R R +R+R A Sbjct: 143 PLGPGARVRTPVEDRRRTRRRRRPDPRRRV--QPRLGVGVHRRRGARRVGRRVRV-RARP 199 Query: 13359 APVTAQRMRPSPHAADAPVTAQRMRPSPHAADAPLTTQRMRPLPRSGYARYRAA---DTP 13189 P A+R R PH P + +RP R R R + R+R+ +TP Sbjct: 200 GPGAARRPRRRPH----PEHPRAVRPRRRTG----RRHRRRASLRPRHRRHRSTPPMNTP 251 Query: 13188 SPRCGYAVTAL 13156 G A+TA+ Sbjct: 252 LTLAGLALTAV 262 Score = 37.4 bits (85), Expect = 0.11 Identities = 61/220 (27%), Positives = 78/220 (35%), Gaps = 9/220 (4%) Frame = -1 Query: 33728 HPCPVSLPARPYRNHQALPPLRDHQNRLRS-------GPPLRERRRT*PGAPGRYPLRPQ 33570 HPC + P+RP + PP+ + R R+ GP + P APG P P Sbjct: 56 HPCRRA-PSRPAAGPRRHPPVARTRPRTRAPECAPDPGPAVH------PAAPGCAPAAPA 108 Query: 33569 THPHSISPILXXXXXXXXXXXXXXXXXXRLWQSTARELPDRFPLHP--RRFQGVADRSRH 33396 ++ P L L R PL P R V DR R Sbjct: 109 APEYA--PALRPRAPECDRGAHH------LRTRAPRTRTRAVPLGPGARVRTPVEDRRRT 160 Query: 33395 RNQRPLLELAFLGDRYRLPHPPQRCSPAVLSAGIQHWLPRGSAWARPGLQLAHRCRPGRW 33216 R R R P P +R P L G+ RG+ R G ++ R RPG Sbjct: 161 R-------------RRRRPDPRRRVQPR-LGVGVHR--RRGAR--RVGRRVRVRARPG-- 200 Query: 33215 PPRPYQPRAQQHRRHPLHRQPYRRKNPPGRRRPVTADRPR 33096 P +PR + H HP +P RR RRR R R Sbjct: 201 PGAARRPRRRPHPEHPRAVRPRRRTGRRHRRRASLRPRHR 240 >ref|YP_024725.1|gp52 Length = 785 Score = 39.3 bits (90), Expect = 0.028 Identities = 50/155 (32%), Positives = 66/155 (42%), Gaps = 20/155 (12%) Frame = -2 Query: 34117 GTTSNSGRVSIISASGTRSTLIDGLPSGLSVPNGDPDGVNGLLLD----GNTLYIAVGEG 33950 GTT N+ +A G TL G P +++P GVNG + G+T Y VG G Sbjct: 420 GTTLNA------NAWGNAYTLFGGSPYNVTLPLLS-SGVNGAAIRFSNIGSTAYTLVGAG 472 Query: 33949 -DLYANGTAQGTLVVNP--NAGKISSPIFDSLLQVDLSQAADKIASG--------FTLQT 33803 D NGT TLV+NP +SS ++ + +S A + SG F T Sbjct: 473 SDAIFNGTTSNTLVLNPGDTVTLVSSGVW-VMFGGSMSLPASGVMSGPGWKTQPQFDNST 531 Query: 33802 ADHTTLFHGQPV-----SLTNTSGDKATVSILAQF 33713 TT F + V S+ N S TVS A F Sbjct: 532 KLATTAFVQRAVGSVVGSMRNASMSVPTVSASATF 566 >ref|NP_944330.1|gp22 Length = 236 Score = 37.0 bits (84), Expect = 0.14 Identities = 61/258 (23%), Positives = 91/258 (35%), Gaps = 7/258 (2%) Frame = -2 Query: 28744 HLLYQLQINRAGVVTPTHFLPTYLAAPSQAALDSLPLTLDQITAERNTPGIGNTLA-QYG 28568 H + QIN+ P F +A P+ A D L I ER T G+ ++G Sbjct: 17 HSIVTPQINKLKPTKPAEFY-ALIALPAAAQAD-----LWAILCERATSAFGHANNFEHG 70 Query: 28567 FTSNITAYVPRGNSEYHGLAVEVTKRYTAHNLFKASYTWSHLMDDSTAEVNSTTLSPRRP 28388 +N T+ P L V +Y A ++ A + T L+P+ P Sbjct: 71 IKTNATSKKPIAGVPGDALVVRAASQY-APEIYDA---------------DGTLLNPQNP 114 Query: 28387 QDFNNIRNEWASSLLDRRQRFSFTWLYEAPWFQRDNSWFKRNLLGNYQIAGTYTVESPEY 28208 I+ ++ + R F W ++ RN + ++ +AG V S Sbjct: 115 AHLQTIKAKFFAGTRVRTILTPFHWTFQG-----------RNGV-SFNLAGIMLVPSEAQ 162 Query: 28207 GTPQSGVDSNQNGDAAADRAIVNSNGTPGTSSDVT------ALKNSAGATVGYLAINPNA 28046 GVD+ A A + G P T+ T A + GA G L NPN Sbjct: 163 RLAIGGVDT---ASAFKKFAQPGTGGVPATAGAPTDAAAAFAAGGNPGAAGGTLPANPN- 218 Query: 28045 QFIRAQVGALANSGRNIL 27992 F + GA G L Sbjct: 219 PFAQQASGAAGAGGNPFL 236 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 177,291,356 Number of Sequences: 14420 Number of extensions: 3771122 Number of successful extensions: 14011 Number of sequences better than 0.5: 3 Number of HSP's better than 0.5 without gapping: 6408 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 13970 length of database: 3,019,461 effective HSP length: 114 effective length of database: 1,375,581 effective search space used: 16571624307 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig117 (35,490 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_195256.1|hypothetical protein 63 2e-09 ref|YP_195258.1|hypothetical protein 59 3e-08 ref|YP_195257.1|virion structural protein 49 3e-05 ref|NP_542287.1|unknown 39 0.027 ref|YP_025041.1|putative transposase B 36 0.30 >ref|YP_195256.1|hypothetical protein Length = 567 Score = 63.2 bits (152), Expect = 2e-09 Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Frame = +3 Query: 10308 TIGSAPAPSAPVITSFSASPTAIASGQVSTLSWNVSG--ATSIVINNGVGDVTSLTSRVV 10481 TI AP P AP + SFSA PT+ + +TL W+V+G TSI INN +G++TS + +V Sbjct: 224 TIDVAP-PDAPSV-SFSADPTSYINPGSTTLRWDVTGFQITSISINNDIGELTSASGSIV 281 Query: 10482 V-PTSTTQYTLTATNSAG 10532 V P+ TT YT++ATN+ G Sbjct: 282 VSPSVTTDYTISATNAGG 299 Score = 55.8 bits (133), Expect = 3e-07 Identities = 58/187 (31%), Positives = 75/187 (40%), Gaps = 15/187 (8%) Frame = +3 Query: 10338 PVITSFSASPTAIASGQV---STLSWNVSG-ATSIVINNGVGDVTSLTSRVVVPTSTTQY 10505 P + SA P + G + STLSWNV G T+ I G+G V + SR V PT+TT Y Sbjct: 149 PPSANISADPLSYKLGDLPNESTLSWNVFGDVTTATIEPGIGAVAASGSRTVSPTTTTTY 208 Query: 10506 TLTATNSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPPMYLNVGGAVELGLKFRSD 10685 TLTA AG A P Y+N G R D Sbjct: 209 TLTAVGPAG--------TSVREVTIDVAPPDAPSVSFSADPTSYINPGSTT-----LRWD 255 Query: 10686 IAG-QITGVRFYKNSYNTGVHSGSLWSANGQLLASGVFTNE----------TATGWQTLT 10832 + G QIT + S N + G L SA+G ++ S T + T T T+T Sbjct: 256 VTGFQITSI-----SINNDI--GELTSASGSIVVSPSVTTDYTISATNAGGTTTRSVTIT 308 Query: 10833 FSTPVSV 10853