BLASTX 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig2 (943,022 letters) Database: Phage.aa 14,420 sequences; 3,019,461 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_818250.1|gp199 315 5e-84 ref|NP_758916.1|ORF23 271 5e-71 ref|NP_817745.1|gp68 270 2e-70 ref|NP_818618.1|gp80 256 2e-66 ref|NP_932448.1|hypothetical protein 222 5e-56 ref|YP_164085.1|Dam modification methylase 219 2e-55 ref|NP_536383.1|DNA adenine methylase 212 5e-53 ref|NP_945057.1|gp26 212 5e-53 ref|NP_758919.1|ORF26 192 4e-47 ref|NP_536393.1|conserved hypothetical protein 191 9e-47 ref|NP_046900.1|gp5 170 2e-40 ref|NP_758937.1|ORF46 169 5e-40 ref|NP_040584.1|capsid component 162 4e-38 ref|NP_945069.1|gp38 159 5e-37 ref|NP_918994.1|putative head-tail preconnector protein 142 5e-32 ref|NP_046685.1|putative DNA polymerase 142 5e-32 ref|NP_490627.1|hypothetical protein 140 2e-31 ref|NP_944320.1|gp12 139 4e-31 ref|NP_542569.1|ribonucleotide reductase 138 7e-31 ref|NP_597931.1|PhoH-like protein 138 9e-31 ref|NP_958082.1|gp26 131 1e-28 ref|NP_052275.1|D protein 129 5e-28 ref|NP_536362.1|putative major capsid protein 124 1e-26 ref|NP_046784.1|gpD 122 5e-26 ref|NP_878226.1|gpD 122 5e-26 ref|NP_542336.1|unknown 121 9e-26 ref|NP_839876.1|gpD 120 1e-25 ref|NP_536361.1|putative capsid assembly protein 119 3e-25 ref|YP_006585.1|putative head maturation protease 119 4e-25 ref|NP_899539.1|PhoH domain protein 118 7e-25 ref|NP_037691.1|IS903 transposase 118 9e-25 ref|NP_758935.1|ORF44 116 3e-24 ref|NP_918997.1|putative terminase large subunit (carboxy-end te... 112 4e-23 ref|YP_006926.1|putative PhoH-like protein 111 1e-22 ref|NP_944891.1|unknown 109 3e-22 ref|NP_944889.1|unknown 109 4e-22 ref|NP_944888.1|unknown 109 4e-22 ref|NP_892049.1|capsid protein 108 1e-21 ref|NP_665987.1|unknown 107 2e-21 ref|NP_490626.1|hypothetical protein 106 3e-21 ref|YP_164275.1|DNA adenine methyltransferase 104 1e-20 ref|NP_046783.1|gpU 103 2e-20 ref|NP_839875.1|gpU 103 2e-20 ref|NP_878225.1|gpU 102 5e-20 ref|YP_006586.1|major capsid head protein precursor 102 7e-20 ref|NP_046899.1|gp4 100 2e-19 ref|YP_024510.1|putative ribonucleotide reductase large subunit 99 8e-19 ref|NP_040583.1|capsid component 99 8e-19 ref|NP_892074.1|partitioning protein SpyA 97 2e-18 ref|NP_046572.1|ABC transporter 97 2e-18 ref|NP_892050.1|capsid protein 94 2e-17 ref|NP_958081.1|gp25 94 2e-17 ref|NP_039714.1|predicted 76.3Kd protein 93 4e-17 ref|NP_052274.1|F protein 92 6e-17 ref|NP_665998.1|putative C5-cytosine methyltransferase 92 9e-17 ref|NP_945089.1|gp58 91 2e-16 ref|YP_195230.1|PhoH 91 2e-16 ref|YP_006605.1|Gp25 89 6e-16 ref|NP_046865.1|putative ribonucleotide reductase 88 1e-15 ref|YP_195185.1|ribonucleotide reductase A subunit 86 4e-15 ref|NP_918998.1|putative terminase large subunit (amino-end term... 85 1e-14 ref|NP_918995.1|putative portal protein 84 2e-14 ref|YP_006584.1|putative portal protein 84 2e-14 ref|NP_536414.1|putative PAPS reductase 84 3e-14 ref|NP_543090.1|putative portal protein 83 3e-14 ref|NP_700401.1|Integrase protein 82 6e-14 ref|NP_700377.1|Portal Protein 82 6e-14 ref|NP_899291.1|Sir2 81 2e-13 ref|NP_050646.1|putative tape measure protein 80 3e-13 ref|NP_817639.1|gp50 80 4e-13 ref|NP_046923.1|gp28 79 5e-13 ref|NP_112664.1|INT 79 6e-13 ref|NP_852555.1|Site-specific recombinase 79 6e-13 ref|NP_052288.1|hypothetical protein 78 1e-12 ref|NP_599035.1|portal protein 77 2e-12 ref|NP_817764.1|gp3 77 3e-12 ref|NP_490623.1|hypothetical protein 77 3e-12 ref|NP_858954.1|head portal protein 76 4e-12 ref|NP_690758.1|ORF25 76 4e-12 ref|YP_024720.1|gp47 76 5e-12 ref|NP_150145.1|putative DNA methylase 75 7e-12 ref|NP_891805.1|aerobic NDP reductase large subunit 75 7e-12 ref|NP_852723.1|putative integrase 75 7e-12 ref|NP_061531.1|integrase 75 1e-11 ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family 74 2e-11 ref|YP_006537.1|Dmt 74 3e-11 ref|NP_536360.1|putative portal protein 74 3e-11 ref|NP_878240.1|Mth 72 6e-11 ref|YP_006930.1|putative Sir2-like protein 72 6e-11 ref|YP_024453.1|putative PhoH-related protein 72 8e-11 ref|NP_511017.1|methylase 72 8e-11 ref|NP_076827.1|Csp 72 1e-10 ref|NP_052271.1|Orf51; P2 E homolog; tail protein 71 1e-10 ref|NP_958078.1|gp23.5 71 1e-10 ref|NP_958079.1|gp23 71 2e-10 ref|NP_892048.1|portal protein 70 2e-10 ref|YP_024677.1|gp04 70 4e-10 ref|NP_542315.1|unknown 69 7e-10 ref|NP_839905.1|putative methylase 68 1e-09 ref|NP_878223.1|gpE 67 2e-09 ref|NP_839873.1|gpE 67 2e-09 ref|NP_839872.1|gpE+E' 67 2e-09 ref|NP_046781.1|gpE 67 2e-09 ref|NP_878222.1|gpE+E' 67 2e-09 ref|NP_059584.1|Int 67 3e-09 ref|NP_046780.1|gpE+E' 67 3e-09 ref|NP_049845.1|NrdA aerobic NDP reductase, large subunit 66 6e-09 ref|NP_599058.1|integrase 65 7e-09 ref|YP_006360.1|Int 65 9e-09 ref|NP_899523.1|aerobic ribonucleoside diphosphate reductase lar... 65 9e-09 ref|NP_758917.1|ORF24 65 1e-08 ref|NP_720278.1|Int 65 1e-08 ref|NP_052270.1|similar to P2 tail tube protein FII, Swiss-Prot ... 65 1e-08 ref|NP_958077.1|gp22 65 1e-08 ref|NP_758932.1|ORF40 64 2e-08 ref|NP_490622.1|hypothetical protein 64 2e-08 ref|NP_046713.1|ribunucleotide reductase large subunit 63 5e-08 ref|NP_852561.1|DNA integration 63 5e-08 ref|NP_899372.1|exsB protein 62 6e-08 ref|NP_075502.1|portal protein 62 8e-08 ref|NP_803337.1|head portal protein 62 1e-07 ref|NP_463477.1|putative tape-measure protein 61 1e-07 ref|NP_932451.1|hypothetical protein 60 2e-07 ref|NP_075302.1|gp35 59 5e-07 ref|YP_006924.1|putative aerobic ribonucleoside diphosphate redu... 59 9e-07 ref|NP_861929.1|NrdA aerobic NDP reductase, large subunit 58 1e-06 ref|NP_046779.1|gpFII 57 3e-06 ref|NP_878221.1|gpFII 57 3e-06 ref|NP_050999.1|P38 57 3e-06 ref|NP_818425.1|gp127 56 4e-06 ref|NP_046897.1|gp2 56 6e-06 ref|NP_944991.1|putative ribonucleoside triphosphate reductase a... 56 6e-06 ref|NP_758933.1|ORF41 55 7e-06 ref|NP_037686.1|integrase 55 7e-06 ref|NP_612832.1|putative portal protein 55 7e-06 ref|NP_932465.1|hypothetical protein 55 1e-05 ref|NP_818228.1|gp169 55 1e-05 ref|NP_943925.1|NrdA-B aerobic NDP reductase large subunit 55 1e-05 ref|YP_006528.1|ParA 54 2e-05 ref|NP_839871.1|FII 54 2e-05 ref|NP_037664.1|head portal protein 54 2e-05 ref|NP_037699.1|portal protein 54 2e-05 ref|NP_037720.1|integrase 53 4e-05 ref|NP_878205.1|gpX 52 6e-05 ref|NP_818053.1|gp80 52 8e-05 ref|NP_665964.1|putative plasmid partitioning protein Soj 52 1e-04 ref|NP_817998.1|gp25 51 2e-04 ref|NP_046778.1|gpFI 51 2e-04 ref|NP_046763.1|gpX 51 2e-04 ref|NP_052256.1|Orf23; P2 X homolog; tail protein 51 2e-04 ref|NP_878220.1|gpFI 51 2e-04 ref|NP_839870.1|gpFI 51 2e-04 ref|NP_758949.1|ORF58 50 2e-04 ref|NP_818239.1|gp188 50 2e-04 ref|NP_818403.1|gp105 50 3e-04 ref|NP_818314.1|gp13 50 3e-04 ref|NP_945033.1|gp3 50 3e-04 ref|NP_040609.1|integration protein 50 3e-04 ref|NP_803872.1|ORF306 50 4e-04 ref|NP_958063.1|gp8 50 4e-04 ref|NP_839856.1|gpX 50 4e-04 ref|NP_758931.1|ORF39 49 5e-04 ref|NP_795429.1|putative integrase 49 5e-04 ref|NP_817718.1|gp41 49 5e-04 ref|NP_569753.1|putative tape-measure protein 49 7e-04 ref|NP_899581.1|gp5 49 7e-04 ref|YP_164086.1|tail length tape measure protein 49 7e-04 ref|NP_044960.1|unknown 49 0.001 ref|NP_758915.1|ORF22 48 0.001 ref|NP_052269.1|similar to P2 tail sheath protein FI, Swiss-Prot... 48 0.001 ref|NP_958076.1|gp21 48 0.001 ref|NP_758936.1|ORF45 48 0.002 ref|YP_195035.1|site-specific DNA methylase Dam 48 0.002 ref|NP_542326.1|unknown 47 0.002 ref|NP_817352.1|gp14 47 0.002 ref|NP_848237.1|adenine methylase 47 0.002 ref|NP_438114.1|integrase-like protein 47 0.003 ref|NP_795541.1|putative integrase 47 0.003 ref|YP_195180.1|virion structural protein 47 0.003 ref|NP_859328.1|hypothetical protein 46 0.005 ref|NP_612960.1|hypothetical protein 46 0.005 ref|NP_859162.1|hypothetical protein 46 0.005 ref|NP_817477.1|gp27 46 0.005 ref|NP_839940.1|putative lysin 46 0.005 ref|NP_050500.1|integrase 46 0.005 ref|NP_536371.1|putative tail length tape measure protein 46 0.005 ref|NP_049461.1|integrase 46 0.005 ref|NP_536807.1|integrase 46 0.006 ref|NP_945044.1|gp14 46 0.006 ref|NP_624303.1|integrase fragment 45 0.008 ref|NP_795464.1|hypothetical protein 45 0.010 ref|NP_943810.1|gp32 45 0.010 ref|NP_043466.1|integrase 45 0.013 ref|NP_203478.1|hypothetical protein 45 0.013 ref|NP_858965.1|tail lenght tape measure protein 44 0.017 ref|NP_056689.1|putative minor tail protein 44 0.017 ref|YP_024782.1|p54 44 0.023 ref|NP_612994.1|hypothetical protein 43 0.038 ref|NP_695118.1|putative tail protein 43 0.038 ref|NP_795660.1|putative integrase 43 0.038 ref|NP_958590.1|putative major tail protein 43 0.038 ref|NP_680485.1|putative portal protein 43 0.038 ref|NP_944901.1|unknown 43 0.038 ref|NP_945240.1|integrase 43 0.038 ref|NP_049482.1|serine 43 0.038 ref|NP_835517.1|integrase 43 0.050 ref|NP_803356.1|integrase 43 0.050 ref|NP_944277.1|hypothetical protein 42 0.066 ref|NP_047971.2|gp26 42 0.066 ref|NP_813725.1|gp9.1 42 0.066 ref|NP_047129.1|putative tail tape measure protein 42 0.066 ref|NP_061500.1|portal protein 42 0.086 ref|NP_817358.1|gp20 42 0.086 ref|NP_945098.1|gp67 42 0.086 ref|NP_818340.1|gp39 42 0.11 ref|NP_695079.1|putative integrase 41 0.15 ref|NP_049990.1|integrase 41 0.15 ref|NP_817742.1|gp65 41 0.15 ref|NP_958506.1|putative integrase 41 0.15 ref|NP_958209.1|gene 33 protein 41 0.15 ref|NP_958267.1|hypothetical protein 41 0.15 ref|YP_195257.1|virion structural protein 41 0.15 ref|YP_024716.1|gp43 41 0.19 ref|NP_795489.1|putative integrase 40 0.25 ref|NP_944253.1|hypothetical protein; similar to DNA methyltrans... 40 0.25 ref|NP_040580.1|DNA packaging protein 40 0.25 ref|NP_938251.1|putative tail component protein 40 0.25 ref|NP_958556.1|putative integrase 40 0.33 ref|YP_195256.1|hypothetical protein 40 0.33 ref|NP_490621.1|hypothetical protein 40 0.33 ref|NP_945295.1|tail length tape measure protein 40 0.33 ref|NP_463492.1|putative integrase 40 0.33 ref|NP_542293.1|unknown 40 0.42 ref|YP_195210.1|virion structural protein 40 0.42 >ref|NP_818250.1|gp199 Length = 1131 Score = 315 bits (806), Expect = 5e-84 Identities = 307/1127 (27%), Positives = 496/1127 (44%), Gaps = 75/1127 (6%) Frame = -1 Query: 646478 LRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASGAGIQPIVGC 646299 L H E S+L+G +++ +VA+TD + + F AG++P++G Sbjct: 8 LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 67 Query: 646298 QVSVAYETAALGERP---KPPAPVVLLAQTETGYGNLMKLSSCLYLGKEG-ALPQVTPSE 646131 + A ER + +VLLA+ TG NL LSS Y ++ PQ+ P Sbjct: 68 EQRWMLNIADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQLDPGL 127 Query: 646130 LERHAEGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYVELQRHP------ 645969 L ++ +GL G ++ Q A G L I+ Y EL Sbjct: 128 LMQYRDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTWQFINPVS 187 Query: 645968 GEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEGAYV-DQ 645792 E L V LA MG+PLV ND ++ ++ H A+ ++ G++ DQ Sbjct: 188 PEQQALNARMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSWKKDQ 247 Query: 645791 VAPRRRLTP--------QHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKRPPILP 645636 R +HY ++ + EA+ N+ IA +C + + +P Sbjct: 248 HEERGHAADWMMNADEIRHYMGLHGVGTSV---IEEAMRNSGWIADQCNAEIDGKLLAMP 304 Query: 645635 RFADDEVEE---LRRQAKEGLAARLAVIPHAAPVEDYEARLSFELGIIEQMGFPGYFLIV 645465 R + E+ RR +EG + V+ P + Y RL +E +I GYF +V Sbjct: 305 RLHATDAEDAAAFRRAIEEGF--KRFVVDKGLPEDVYRQRLEYEAKLIIDKNMAGYFNVV 362 Query: 645464 ADFIKWGK-------ANGIP------VGPGRGSGAGSLVAYALTITDLDPLRYQLLFERF 645324 AD++ + G P GPGRGS GSLV Y + IT +DP++Y L+FERF Sbjct: 363 ADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKYDLMFERF 422 Query: 645323 LNPERVSMPDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQM 645144 +NP+R PD D+DF ++ V +Y+ ++YG + V I T + ++D+ R + Sbjct: 423 INPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQDLCRAQGI 482 Query: 645143 PYGQVDRLSKMI-PVEGVKPVSIQKAL-ADEPRLREAAKTEEVVKRLLDYGM-------- 644994 P+G++ ++ ++ V+ + P L DE +E+ L Y Sbjct: 483 PFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAKKYPDLFNL 542 Query: 644993 --QIEGLLRNASTHAAGVVIGDRPL-DELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDF 644823 Q+ ++R H AGV++ P+ L+P + +D+ ATQF+M +E G VK D Sbjct: 543 MEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELEELGGVKDDL 602 Query: 644822 LGLKTLTVIQNAIDLIRGTGRPLHMAADGRVLYDPPPGAENDI---GHIPLEDKATYELY 644652 L K L V+ A DLI + + DG + P GAE I L D A Y+ Sbjct: 603 LANKGLDVLDIARDLIY-ERHGVWIDYDG-FGFGIPEGAEKVITLNEERYLNDPAIYDQI 660 Query: 644651 AQAKTVAVFQVESSGMMDALRRMKPTCIEDIVALVALYRPGPMENIP----VYCEVKHGL 644484 + +T +FQV + R +P + D+ L ++ RPG + +P Y E +HG Sbjct: 661 DRGQTAGLFQVNTPAGTKLAMRFRPRSVVDMADLASINRPG-VTRVPGLLDKYIERRHGR 719 Query: 644483 RDLESLHPTIDPIL-----KETQGIIVYQEQVMQIAQVMGGYTLGGADLLRRAMGKKIAE 644319 + HP ++ I T GI+VYQEQ+++ A+ + G+T G A+ LR+ +GKK E Sbjct: 720 EQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGIGKKKME 779 Query: 644318 EMAKERPKFIEGAKK-----THGIDAKKAGEVFDLLEKFANYGFNKSHAAAYAVVSYQTA 644154 + + PKF++G G K A ++ L+ Y FNKSH YA+ Q A Sbjct: 780 IINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYALQPCQEA 839 Query: 644153 WLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRTVAPCVNASLATFTVRDGAVVY 643974 W+K + EF + C + TDK + RE + + P VN S A FT+ D + + Sbjct: 840 WVKHYYFDEF---ITGCLVIHTDKTIRFLRECRQRKRAVLPPDVNQSGAGFTLTDEGIRF 896 Query: 643973 ALGALKNVGVEAMRLIVEARGDRPFATLFD-MARRVELKRIGKRPLEMLARAGAFDALDR 643797 L + +G AM I+ +RPF L D +AR + K ++ L + GAFD Sbjct: 897 GLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDALIKVGAFDFTGE 953 Query: 643796 NRARVFEALDALVAYSAAIHEALNSSQVSLFGEAGADIPEPRLPSRDDWLPVERLAQ--- 643626 +R + L+ + + + + +++SL E A+I R +D+ PV Sbjct: 954 HRQVM---LEKVYRHRRGLSAPVKWAKMSL-DEQVAEIAAKRRVKPEDY-PVYNFEDPQF 1008 Query: 643625 ----EHQAIGFYLSGHPLDDYMGALKRRNVTTLAALTDL--AQRGPMVAKLAGAVSSRQE 643464 E + +G ++S P+ Y + + D R + KL A + RQ+ Sbjct: 1009 IHDLEVEMLGTFVSYDPMAKYARMIDGECIRHPMDYDDFEPGDRFCVGGKLVKARTHRQK 1068 Query: 643463 KKSAKGNRFAFVQLSDPTGLYECTVFSDVLEQARDLLEPGGHVVLTV 643323 G + AF+ + +E F+D + + LL+ G VV V Sbjct: 1069 ----NGKQMAFLAVHWNEEDFEILAFADAWARCQPLLKVGMPVVCEV 1111 >ref|NP_758916.1|ORF23 Length = 495 Score = 271 bits (694), Expect = 5e-71 Identities = 157/403 (38%), Positives = 226/403 (56%), Gaps = 11/403 (2%) Frame = -2 Query: 906967 MNARARYLVRNNGYAQGALDSWAANTVGTGVKPSSLIAAPARKAALQRLWQDWTDEADAE 906788 + AR+ + VRNN +A A+ +W A VG G+ P + + LQ LW DW +EAD + Sbjct: 52 LRARSHHNVRNNPWATNAVATWVAAAVGNGLTPRWRMKEQELRQELQELWGDWVNEADFD 111 Query: 906787 GVTDFYGLQRRIAREFFLTGECFVRLRARRPGDGLTVPLQLQCLPSEMLPIG-RTEVLGG 906611 V FYGLQ + R +GE FV + R +GL+VPLQLQ + +ML E L Sbjct: 112 EVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGLSVPLQLQIIEPDMLASDIPDETLPS 171 Query: 906610 GRAIRQGIEFDAVGRRVAYHFHRRHPGDPTEPGLAGETVRVPAEDVLHIVDPVESGQLRG 906431 G ++ GI F G+R AY F+R HP + + G +TV + AE VLH+ V + + Sbjct: 172 GGYVKGGIRFSNGGKRKAYCFYRNHPAESSLIGDPVDTVWIKAEHVLHVT--VLTVRSDA 229 Query: 906430 VSRFAPAIVKLFLLDQYDDAELDRKKVAAMYAMFITSNDPDAA-------PLEGELGDQV 906272 + + +++L LDQY+DAEL RKK AA++A FI D+ P + G ++ Sbjct: 230 GAPWFQLLLRLNELDQYEDAELVRKKTAALFAAFIQEATADSTGGPTIGQPKRSKGGKRI 289 Query: 906271 A---PGQIVRLDPGEDMKVADPADSGATYEPFQYRTLLQVSAALGIPYAHLSQDMVKANY 906101 PG + L PG+++K ++PAD G TYEP+ LL ++ GI Y L+ D+ NY Sbjct: 290 TGLNPGTLQYLQPGQEVKFSNPADVGTTYEPWLRYQLLSIAKGYGITYEMLTGDLRGVNY 349 Query: 906100 SNARTALMEFRRRVEAFQHSVLVYQLCRPVWARFTDLAVLTGAVGLPGYERRRRDYLACE 905921 S+ R L+EFRR + QH ++++Q CRPV F D AV +GAV +P Y +RRR Y Sbjct: 350 SSIRAGLLEFRRLCQQVQHHMIIHQFCRPVGRWFMDFAVASGAVVIPDYLQRRRYYNRVS 409 Query: 905920 WLPPKWQWVDPLKDIRAEIEEIGAGLKSRSQAIGERGYDAEEV 905792 W P+W+ VDPLK A++ ++ AG S ERGYD EE+ Sbjct: 410 WRTPRWEEVDPLKKHLADLGDVRAGFAPISDKQAERGYDMEEL 452 Score = 165 bits (418), Expect = 5e-39 Identities = 89/216 (41%), Positives = 127/216 (58%), Gaps = 10/216 (4%) Frame = +1 Query: 738610 IVKLFLLDQYDDAELDRKKVAAMYAMFITSNDPDAA-------PLEGELGDQVA---PGQ 738759 +++L LDQY+DAEL RKK AA++A FI D+ P + G ++ PG Sbjct: 237 LLRLNELDQYEDAELVRKKTAALFAAFIQEATADSTGGPTIGQPKRSKGGKRITGLNPGT 296 Query: 738760 IVRLDPGEDMKVADPADSGATYEPFQYRTLLQVSAALGIPYAHLSQDMVKANYSNARTAL 738939 + L PG+++K ++PAD G TYEP+ LL ++ GI Y L+ D+ NYS+ R L Sbjct: 297 LQYLQPGQEVKFSNPADVGTTYEPWLRYQLLSIAKGYGITYEMLTGDLRGVNYSSIRAGL 356 Query: 738940 MEFRRRVEAFQHSVLVYQLCRPVWARFTDLAVLTGAVRLPGYERRRRDYLACEWLPPKWQ 739119 +EFRR + QH ++++Q CRPV F D AV +GAV +P Y +RRR Y W P+W+ Sbjct: 357 LEFRRLCQQVQHHMIIHQFCRPVGRWFMDFAVASGAVVIPDYLQRRRYYNRVSWRTPRWE 416 Query: 739120 WVDPLKDIRAEIEEIGAGLKSRSQAIGERGYDAEEV 739227 VDPLK A++ ++ AG S ERGYD EE+ Sbjct: 417 EVDPLKKHLADLGDVRAGFAPISDKQAERGYDMEEL 452 >ref|NP_817745.1|gp68 Length = 386 Score = 270 bits (689), Expect = 2e-70 Identities = 171/386 (44%), Positives = 207/386 (53%), Gaps = 24/386 (6%) Frame = +2 Query: 919481 GQSMAETSTIEWTDATWNPITGCTL---ASPGCQFCYAADLAATRLSQHPSRAGLARRNA 919651 G+ M++ + IEWTDATWNP+TGCT ASPGCQ CYA+ A R Sbjct: 29 GEPMSDHTGIEWTDATWNPVTGCTKLSPASPGCQNCYASTFAERF------------RGT 76 Query: 919652 AGVAAWTG-EVRLNEQWLEQPLRWKRPRRIFVCAHADLFHEAVPDEWIDRVFAVMALAPQ 919828 G G +V+L L QP+RW+RPRRIFV + +DLFH+ VPD +I +VFAVMALAPQ Sbjct: 77 PGHYFERGFDVQLRYDKLLQPMRWRRPRRIFVNSMSDLFHDQVPDAYIAKVFAVMALAPQ 136 Query: 919829 HTFQVLTKRAARMRGYVSKLDIYALEEADEWRDADHRVACDDDPNGSPAWHAQTAALEDA 920008 HTFQVLTKR RMR +S+ D L A A+ A + W Sbjct: 137 HTFQVLTKRHGRMRSLLSREDFRELMHAAGTNRAEMSDAAGEWLRSESPW---------- 186 Query: 920009 LSAARTCLEAGKPLPNVWLGVSAEDQQRADERIPDLLATSAAVRFGSFEPLLGPMDVAWA 920188 PLPNVWLGVS E+Q+ AD RIP LL T AAVRF S EPLLGP+D+ Sbjct: 187 ------------PLPNVWLGVSTENQKWADVRIPALLDTPAAVRFISAEPLLGPVDLTPW 234 Query: 920189 LGHPFGIAAGFLQRGHFSP---------------GAEKLRGLDWIIVGGESGRHARPMHP 920323 +G P +G SP G GL W+IVGGESG ARPMHP Sbjct: 235 IGCPHDSLSGVDNAPLDSPKKRWRCDQCRASVLAGTVTNVGLHWVIVGGESGPGARPMHP 294 Query: 920324 AWARSLRDQAQAAGVPFLFKQWGE---WARAD--KLLPGHPGDVTYWPXXXXXXXXXXXX 920488 WAR LRDQ AAGVPFLFKQWG+ W +D + + + T Sbjct: 295 DWARGLRDQCTAAGVPFLFKQWGQYRPWLPSDTNRNVDTYVRRETGASADYVQVSGPAAM 354 Query: 920489 XXXXWSLRRVGKRAAGRRLDGRTWDE 920566 +++ RVGK+ AGR LDGRTWD+ Sbjct: 355 PGHWYAMVRVGKKRAGRELDGRTWDQ 380 >ref|NP_818618.1|gp80 Length = 1111 Score = 256 bits (654), Expect = 2e-66 Identities = 218/797 (27%), Positives = 354/797 (44%), Gaps = 59/797 (7%) Frame = -1 Query: 646322 GIQPIVGCQVSVAYETAALGERPKPPAPVVLLAQTETGYGNLMKLSSCLYLGKEGALPQV 646143 GI+PI GC++ + ++ + + + A E GY NL ++ + Y+ P V Sbjct: 58 GIKPIFGCEIY--FSPVGEEDKTRRKTHLTIFAMNEIGYRNLNRIITQSYVDAY-QWPTV 114 Query: 646142 TPSELERHAEGLICLTGGPD-------------GPVGRHLREGQRAKAEALLGRLAAIYP 646002 + LE + EG++ L+G D G H+ + A + R ++ Sbjct: 115 SWENLEANHEGILVLSGCADSLLSCTLLGGKYLGEQRSHVTDDDMDNARRQIQRYLDVFG 174 Query: 646001 GRLYVELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALI 645822 R +E+QR P + RA P EL+ G+PLVAT DV++P PE + L Sbjct: 175 NRFALEVQRFPHY-----DRTRALNPAIAELSRDTGVPLVATADVHYPFPEQNKLQALLH 229 Query: 645821 C---------IAEGAYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCA 645669 AE ++ L+ + AD +A++ T +A RC Sbjct: 230 AARWKSSPDFAAEASWEHSANLTYPLSDKEIHDDLVATGLDSADAWKAIQYTSILAERCT 289 Query: 645668 FKAAKRPPILPRFADDE----VEELRRQAKEGLAARLAVIPHAAPVE-DYEARLSFELGI 645504 + K P+ RF D+ ++L R+ +G R+A P A + +Y RL +E I Sbjct: 290 VELPKAKPL--RFVCDKGLTAKQQLSREIAKGWKYRVAQRPDMARRKAEYVKRLQYEFKI 347 Query: 645503 IEQMGFPGYFLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLR---YQLLF 645333 I F YFL+++D ++ K I VGP RGS A SL++Y L IT++DPL +++F Sbjct: 348 ITDKDFGDYFLVISDLVRRAKDKSIDVGPARGSAAASLISYLLRITEIDPLHPLFNKMVF 407 Query: 645332 ERFLNPERVSMPDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRV 645153 ERF++P R PD D+DF ++R E+ + YG + V + K ++DV R Sbjct: 408 ERFIDPFRSDYPDIDLDFDDEKRWEIELDAKNLYGPENVASVANNTGYHGKNTLKDVARA 467 Query: 645152 LQMPYGQVDRLSK----MIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQIE 644985 ++P ++K + + + SI L E A E L + +E Sbjct: 468 YKLPLETFKAIAKRTTVRVETDDKRNDSISDVLESYATHPEIAGLIEAHADKLAMAVALE 527 Query: 644984 -----GLLRNASTHAAGVVIGDRPLDELVPLY-QDPRSDMPATQ-----FNMKWVEAAGL 644838 G L ++S HA G VI P+ ++ +Y +D S T+ ++ + E+ G+ Sbjct: 528 SGNGDGNLHSSSVHACGFVIASDPIPDVCAIYLKDKGSGSKKTKVQVIPYDKRDAESLGM 587 Query: 644837 VKFDFLGLKTLTVIQNAIDLIRGTGR----PLHMAADG------RVLYDPPPGAENDIGH 644688 +K DFLG T+ AI L+R R L+++ RV +G Sbjct: 588 LKVDFLGSATM----GAIGLMRKWSRVELEELYLSIYKDYDRWIRVQKRIKESGGKRVGF 643 Query: 644687 IPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKPTCIEDIVALVALYRPGPM--ENI 644514 + + V + Q E R ++P +++ A AL RPGP Sbjct: 644 TANRFDNILKRFRNDDVVGIMQFEGGTTRQVCRNVQPVDFDELAACTALSRPGPYYGGQY 703 Query: 644513 PVYCEVKHGLRDLESLHPT-IDPILKETQGIIVYQEQVMQIAQVMGGYTLGGADLLRRAM 644337 Y VK+G +D +HP D + T G IVYQEQ+M I + + G+ +R+ + Sbjct: 704 TDYVAVKNGEKDWARIHPKGFDRHVAFTFGQIVYQEQIMWILRDLAGFDNAEVLRVRKII 763 Query: 644336 GKKIAE-EMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKFANYGFNKSHAAAYAVVSYQ 644160 GKK+ E + + FI+G +T G+D A VF + A Y FN +HA +YA+++Y Sbjct: 764 GKKLGEFQFEAIKQAFIDGCAQTCGVDPDTALRVFGAIRTAAGYAFNIAHAYSYALIAYW 823 Query: 644159 TAWLKANHPVEFMAAVM 644109 K +H EF A+ + Sbjct: 824 QMGFKMDHTTEFFASTL 840 >ref|NP_932448.1|hypothetical protein Length = 396 Score = 222 bits (565), Expect = 5e-56 Identities = 147/410 (35%), Positives = 205/410 (50%), Gaps = 15/410 (3%) Frame = -2 Query: 495172 MERIDLPERPGWRDRAEELGFTFADMHGEPYWDETSA----YGFGLAEVEEMIEDPATAL 495005 M+R+ + R W + G + PYW E A Y F AE +E+ E A L Sbjct: 1 MKRLSIEARKDWLPQLTSEGVLWTTTEEGPYWSEAMAKPVYYSFTKAEQQEL-ELAANTL 59 Query: 495004 HAMCREAAGHIIGSEELLDRLA------IPAEHRDLIAESWQRGDPEIYGRFDLAHDGQG 494843 H MC + RL IP R +I +SW + YGRFD G Sbjct: 60 HGMCIDTLRWFFEEASFAQRLRVWDMFNIPENARQMIIDSWSADEWGFYGRFDFIMTKDG 119 Query: 494842 PSKLLEYNADTPTSLYESASFQWSWLQDQIEAGVLPARSDQFNGIHEALVERF---RSLF 494672 P K+LEYNADTPT L ES+ QW+W QFN IHE+LV + + L Sbjct: 120 P-KMLEYNADTPTILIESSISQWNWFTQNNFPNHY-----QFNEIHESLVNHWADMKKLN 173 Query: 494671 PPDTDLHFTAVGGNPEDYATVECMGWAARAAGLGAHYSDLEKIGLSREGQFLDADNRVIG 494492 + L+ A +D+AT+ +G A AG+ + D+ +I +S G+F D +R++ Sbjct: 174 GLNGCLNIVATS-QVDDFATIAYIGETAAEAGIPVNVFDISEIQMSDAGRFYDQQDRLME 232 Query: 494491 TLFKLYPWEDLLRDDYARHIRSSNCLMLEPAWKAVLSNKGLLPVLWQMFEGHPNLLPAFF 494312 FKLYPWE ++ D++ + S +EPAWK +LSNK LL +L++ + L+PA+ Sbjct: 233 YCFKLYPWEWMMEDEFGAYAHKSGTRFIEPAWKMMLSNKALLVLLYERYPNCKWLVPAYE 292 Query: 494311 EAEVAAGGPAVDRAAETLRRG--HVLKPLFSREGASISILEEGQVTEASPRDDYAGHPRI 494138 E + DR V KPL SREG+++ I E G +E S +YA PRI Sbjct: 293 EDD-------FDRLNLFTFENPKWVSKPLLSREGSNVHIFEYGGESE-STDGNYAEEPRI 344 Query: 494137 VQAYHPLPVFGGFRPVVGAWIVGETCVGMGLREDRSRITQDLSRFKPHFV 493988 VQ Y F G P++G W+VG+ VG+G+RED RIT + SRF PH V Sbjct: 345 VQEYIEWQEFDGCYPMIGVWMVGDDAVGLGIREDDGRITGNNSRFIPHVV 394 >ref|YP_164085.1|Dam modification methylase Length = 264 Score = 219 bits (559), Expect = 2e-55 Identities = 114/261 (43%), Positives = 160/261 (61%), Gaps = 1/261 (0%) Frame = +2 Query: 423683 QPVAPWIGGKRNLARRICAILDRSPCLTYAEPFVGMAGIFLRRSSRPRAEVINDRGRDVA 423862 QP+ PWIGGKR LA RI + R C Y EPF G A +F R EV+ND D+ Sbjct: 4 QPIIPWIGGKRRLADRIFPLFPRHSC--YVEPFAGGAALFFLRPVPADVEVLNDINGDLV 61 Query: 423863 NLFRILQRHYPQFLDTLRFQLTTRAEFERLGATDPDTLTDLERAARFLYLQRTAFGGKVS 424042 NL+R++Q H +F+ ++ L++R F+ L T P+TLTD++RAARF YLQ++AFGG+V Sbjct: 62 NLYRVVQHHLEEFVRQFKWALSSRQVFKWLQETRPETLTDIQRAARFYYLQQSAFGGRVD 121 Query: 424043 GRNFGVSSHRPGRFNLTTLEPMLEDLHSRLAGVIVECLDWADFLARYDRPETLFYLDPPY 424222 G+++G ++ P NL LE L H RL+ +E L W D L RYDR TLFY+DPPY Sbjct: 122 GQSYGTATTSPPGLNLLRLEETLSAAHLRLSNTYIEHLSWQDCLRRYDREHTLFYMDPPY 181 Query: 424223 WGSETDYGRGL-FQREDFGLMAERLAKLQGRFLLSINDVPQIRAIFGRFRITEVTTTYSI 424399 W +E G G+ F E + MA +L+G+ ++S+ND P+IR F F I TY++ Sbjct: 182 WETE---GYGVPFGFEQYQEMAVMFRQLKGKAIISLNDHPEIRECFASFHIESTDITYTV 238 Query: 424400 SGSAKGNGTARPELLVSNWDI 424462 G G G+A E+L+ +WD+ Sbjct: 239 GG---GQGSAAREVLIFSWDL 256 Score = 201 bits (510), Expect = 1e-49 Identities = 106/253 (41%), Positives = 151/253 (59%), Gaps = 1/253 (0%) Frame = +1 Query: 744403 AAPVAPWLGGKKRLHPLILERIEAIPHRAYVEPFVGMGGIFLRRRFRPRLEVMNDRNGEI 744582 A P+ PW+GGK+RL I H YVEPF G +F R +EV+ND NG++ Sbjct: 3 AQPIIPWIGGKRRLADRIFPLFPR--HSCYVEPFAGGAALFFLRPVPADVEVLNDINGDL 60 Query: 744583 INLFRILQRHYPQLLEIMRFQICSRREFDRLRLTDPATLTDLERAARFLYLQRLSFGGKL 744762 +NL+R++Q H + + ++ + SR+ F L+ T P TLTD++RAARF YLQ+ +FGG++ Sbjct: 61 VNLYRVVQHHLEEFVRQFKWALSSRQVFKWLQETRPETLTDIQRAARFYYLQQSAFGGRV 120 Query: 744763 DG-VFGVSAGHGPRFSLARLEPVLDAAHERLDGVVFESLDWADLIPRYDTTETLFYLDPP 744939 DG +G + P +L RLE L AAH RL E L W D + RYD TLFY+DPP Sbjct: 121 DGQSYGTATTSPPGLNLLRLEETLSAAHLRLSNTYIEHLSWQDCLRRYDREHTLFYMDPP 180 Query: 744940 YFGGENDYGKGLFDRAQFARIAEILGGLKGAFLLSINDTPEIRALFGRFHLEPVRLSYSV 745119 Y+ E YG F Q+ +A + LKG ++S+ND PEIR F FH+E ++Y+V Sbjct: 181 YWETEG-YGVP-FGFEQYQEMAVMFRQLKGKAIISLNDHPEIRECFASFHIESTDITYTV 238 Query: 745120 SASGGTEAQELLV 745158 G+ A+E+L+ Sbjct: 239 GGGQGSAAREVLI 251 Score = 194 bits (492), Expect = 1e-47 Identities = 104/253 (41%), Positives = 149/253 (58%), Gaps = 1/253 (0%) Frame = -1 Query: 890015 AAPVAPWLGGKKRLHPLILERIEAIPHRAYVEPFVGMGGIFLRRRFRPRLEVMNDRNGEI 889836 A P+ PW+GGK+RL I H YVEPF G +F R +EV+ND NG++ Sbjct: 3 AQPIIPWIGGKRRLADRIFPLFPR--HSCYVEPFAGGAALFFLRPVPADVEVLNDINGDL 60 Query: 889835 INLFRILQRHYPQLLEIMRFQICSRREFDRLRLTDPATLTDLERAARFLYLQRLSFGGKP 889656 +NL+R++Q H + + ++ + SR+ F L+ T P TLTD++RAARF YLQ+ +FGG+ Sbjct: 61 VNLYRVVQHHLEEFVRQFKWALSSRQVFKWLQETRPETLTDIQRAARFYYLQQSAFGGRV 120 Query: 889655 NG-SFGISPGNGPLFSLARLEPLLDAARTRLDGVVFECLDWADLIPRYDTAETLFYLDPP 889479 +G S+G + + P +L RLE L AA RL E L W D + RYD TLFY+DPP Sbjct: 121 DGQSYGTATTSPPGLNLLRLEETLSAAHLRLSNTYIEHLSWQDCLRRYDREHTLFYMDPP 180 Query: 889478 YFGGENDYGKGLFDRAQFARIAEILGSLKGAFLLSINDTPEIRALFGRFHLEPVRLNYSV 889299 Y+ E YG F Q+ +A + LKG ++S+ND PEIR F FH+E + Y+V Sbjct: 181 YWETEG-YGVP-FGFEQYQEMAVMFRQLKGKAIISLNDHPEIRECFASFHIESTDITYTV 238 Query: 889298 SAAGSTEAQELLV 889260 + A+E+L+ Sbjct: 239 GGGQGSAAREVLI 251 >ref|NP_536383.1|DNA adenine methylase Length = 262 Score = 212 bits (539), Expect = 5e-53 Identities = 115/258 (44%), Positives = 156/258 (60%) Frame = +2 Query: 423686 PVAPWIGGKRNLARRICAILDRSPCLTYAEPFVGMAGIFLRRSSRPRAEVINDRGRDVAN 423865 P+ PWIGGKR LA I + C Y E F G A ++ R R EVIND ++ N Sbjct: 4 PIIPWIGGKRRLADHIIPRFPKHDC--YVEVFAGGAALYFMRPPA-RVEVINDINGELVN 60 Query: 423866 LFRILQRHYPQFLDTLRFQLTTRAEFERLGATDPDTLTDLERAARFLYLQRTAFGGKVSG 424045 L+R++Q H +F+ ++ LT+R FE L T P+TLTD++RAARF YLQ++ FGGK+ G Sbjct: 61 LYRVVQHHLEEFVRQFKWALTSRQVFEWLKHTVPETLTDIQRAARFYYLQKSCFGGKLEG 120 Query: 424046 RNFGVSSHRPGRFNLTTLEPMLEDLHSRLAGVIVECLDWADFLARYDRPETLFYLDPPYW 424225 + FG ++ NL +E L H RLA +E LDWA + RYDRP TLFYLDPPY+ Sbjct: 121 QTFGTATTTVPGLNLLRIEEELSAAHIRLANAYIERLDWATCIDRYDRPHTLFYLDPPYF 180 Query: 424226 GSETDYGRGLFQREDFGLMAERLAKLQGRFLLSINDVPQIRAIFGRFRITEVTTTYSISG 424405 +E YG F ++ MAERL ++GR ++S+ND P+IR +F F I V Y+I G Sbjct: 181 ETE-GYGVA-FPFTEYEKMAERLRSIKGRAIVSLNDHPEIRRVFAGFHIESVPIQYTIGG 238 Query: 424406 SAKGNGTARPELLVSNWD 424459 G G R EL++ +WD Sbjct: 239 ---GKGVERRELIIFSWD 253 Score = 208 bits (530), Expect = 5e-52 Identities = 112/253 (44%), Positives = 156/253 (61%), Gaps = 1/253 (0%) Frame = +1 Query: 744403 AAPVAPWLGGKKRLHPLILERIEAIPHRAYVEPFVGMGGIFLRRRFRPRLEVMNDRNGEI 744582 A P+ PW+GGK+RL I+ R H YVE F G ++ R R+EV+ND NGE+ Sbjct: 2 ANPIIPWIGGKRRLADHIIPRFPK--HDCYVEVFAGGAALYFMRP-PARVEVINDINGEL 58 Query: 744583 INLFRILQRHYPQLLEIMRFQICSRREFDRLRLTDPATLTDLERAARFLYLQRLSFGGKL 744762 +NL+R++Q H + + ++ + SR+ F+ L+ T P TLTD++RAARF YLQ+ FGGKL Sbjct: 59 VNLYRVVQHHLEEFVRQFKWALTSRQVFEWLKHTVPETLTDIQRAARFYYLQKSCFGGKL 118 Query: 744763 DG-VFGVSAGHGPRFSLARLEPVLDAAHERLDGVVFESLDWADLIPRYDTTETLFYLDPP 744939 +G FG + P +L R+E L AAH RL E LDWA I RYD TLFYLDPP Sbjct: 119 EGQTFGTATTTVPGLNLLRIEEELSAAHIRLANAYIERLDWATCIDRYDRPHTLFYLDPP 178 Query: 744940 YFGGENDYGKGLFDRAQFARIAEILGGLKGAFLLSINDTPEIRALFGRFHLEPVRLSYSV 745119 YF E YG F ++ ++AE L +KG ++S+ND PEIR +F FH+E V + Y++ Sbjct: 179 YFETEG-YGVA-FPFTEYEKMAERLRSIKGRAIVSLNDHPEIRRVFAGFHIESVPIQYTI 236 Query: 745120 SASGGTEAQELLV 745158 G E +EL++ Sbjct: 237 GGGKGVERRELII 249 Score = 200 bits (509), Expect = 1e-49 Identities = 110/253 (43%), Positives = 154/253 (60%), Gaps = 1/253 (0%) Frame = -1 Query: 890015 AAPVAPWLGGKKRLHPLILERIEAIPHRAYVEPFVGMGGIFLRRRFRPRLEVMNDRNGEI 889836 A P+ PW+GGK+RL I+ R H YVE F G ++ R R+EV+ND NGE+ Sbjct: 2 ANPIIPWIGGKRRLADHIIPRFPK--HDCYVEVFAGGAALYFMRP-PARVEVINDINGEL 58 Query: 889835 INLFRILQRHYPQLLEIMRFQICSRREFDRLRLTDPATLTDLERAARFLYLQRLSFGGKP 889656 +NL+R++Q H + + ++ + SR+ F+ L+ T P TLTD++RAARF YLQ+ FGGK Sbjct: 59 VNLYRVVQHHLEEFVRQFKWALTSRQVFEWLKHTVPETLTDIQRAARFYYLQKSCFGGKL 118 Query: 889655 NG-SFGISPGNGPLFSLARLEPLLDAARTRLDGVVFECLDWADLIPRYDTAETLFYLDPP 889479 G +FG + P +L R+E L AA RL E LDWA I RYD TLFYLDPP Sbjct: 119 EGQTFGTATTTVPGLNLLRIEEELSAAHIRLANAYIERLDWATCIDRYDRPHTLFYLDPP 178 Query: 889478 YFGGENDYGKGLFDRAQFARIAEILGSLKGAFLLSINDTPEIRALFGRFHLEPVRLNYSV 889299 YF E YG F ++ ++AE L S+KG ++S+ND PEIR +F FH+E V + Y++ Sbjct: 179 YFETEG-YGVA-FPFTEYEKMAERLRSIKGRAIVSLNDHPEIRRVFAGFHIESVPIQYTI 236 Query: 889298 SAAGSTEAQELLV 889260 E +EL++ Sbjct: 237 GGGKGVERRELII 249 >ref|NP_945057.1|gp26 Length = 262 Score = 212 bits (539), Expect = 5e-53 Identities = 115/258 (44%), Positives = 156/258 (60%) Frame = +2 Query: 423686 PVAPWIGGKRNLARRICAILDRSPCLTYAEPFVGMAGIFLRRSSRPRAEVINDRGRDVAN 423865 P+ PWIGGKR LA I + C Y E F G A ++ R R EVIND ++ N Sbjct: 4 PIIPWIGGKRRLADHIIPRFPKHDC--YVEVFAGGAALYFMRPPA-RVEVINDINGELVN 60 Query: 423866 LFRILQRHYPQFLDTLRFQLTTRAEFERLGATDPDTLTDLERAARFLYLQRTAFGGKVSG 424045 L+R++Q H +F+ ++ LT+R FE L T P+TLTD++RAARF YLQ++ FGGK+ G Sbjct: 61 LYRVVQHHLEEFVRQFKWALTSRQVFEWLKHTVPETLTDIQRAARFYYLQKSCFGGKLEG 120 Query: 424046 RNFGVSSHRPGRFNLTTLEPMLEDLHSRLAGVIVECLDWADFLARYDRPETLFYLDPPYW 424225 + FG ++ NL +E L H RLA +E LDWA + RYDRP TLFYLDPPY+ Sbjct: 121 QTFGTATTTVPGLNLLRIEEELSAAHIRLANAYIERLDWATCIDRYDRPHTLFYLDPPYF 180 Query: 424226 GSETDYGRGLFQREDFGLMAERLAKLQGRFLLSINDVPQIRAIFGRFRITEVTTTYSISG 424405 +E YG F ++ MAERL ++GR ++S+ND P+IR +F F I V Y+I G Sbjct: 181 ETE-GYGVA-FPFTEYEKMAERLRSIKGRAIVSLNDHPEIRRVFAGFHIESVPIQYTIGG 238 Query: 424406 SAKGNGTARPELLVSNWD 424459 G G R EL++ +WD Sbjct: 239 ---GKGVERRELIIFSWD 253 Score = 208 bits (530), Expect = 5e-52 Identities = 112/253 (44%), Positives = 156/253 (61%), Gaps = 1/253 (0%) Frame = +1 Query: 744403 AAPVAPWLGGKKRLHPLILERIEAIPHRAYVEPFVGMGGIFLRRRFRPRLEVMNDRNGEI 744582 A P+ PW+GGK+RL I+ R H YVE F G ++ R R+EV+ND NGE+ Sbjct: 2 ANPIIPWIGGKRRLADHIIPRFPK--HDCYVEVFAGGAALYFMRP-PARVEVINDINGEL 58 Query: 744583 INLFRILQRHYPQLLEIMRFQICSRREFDRLRLTDPATLTDLERAARFLYLQRLSFGGKL 744762 +NL+R++Q H + + ++ + SR+ F+ L+ T P TLTD++RAARF YLQ+ FGGKL Sbjct: 59 VNLYRVVQHHLEEFVRQFKWALTSRQVFEWLKHTVPETLTDIQRAARFYYLQKSCFGGKL 118 Query: 744763 DG-VFGVSAGHGPRFSLARLEPVLDAAHERLDGVVFESLDWADLIPRYDTTETLFYLDPP 744939 +G FG + P +L R+E L AAH RL E LDWA I RYD TLFYLDPP Sbjct: 119 EGQTFGTATTTVPGLNLLRIEEELSAAHIRLANAYIERLDWATCIDRYDRPHTLFYLDPP 178 Query: 744940 YFGGENDYGKGLFDRAQFARIAEILGGLKGAFLLSINDTPEIRALFGRFHLEPVRLSYSV 745119 YF E YG F ++ ++AE L +KG ++S+ND PEIR +F FH+E V + Y++ Sbjct: 179 YFETEG-YGVA-FPFTEYEKMAERLRSIKGRAIVSLNDHPEIRRVFAGFHIESVPIQYTI 236 Query: 745120 SASGGTEAQELLV 745158 G E +EL++ Sbjct: 237 GGGKGVERRELII 249 Score = 200 bits (509), Expect = 1e-49 Identities = 110/253 (43%), Positives = 154/253 (60%), Gaps = 1/253 (0%) Frame = -1 Query: 890015 AAPVAPWLGGKKRLHPLILERIEAIPHRAYVEPFVGMGGIFLRRRFRPRLEVMNDRNGEI 889836 A P+ PW+GGK+RL I+ R H YVE F G ++ R R+EV+ND NGE+ Sbjct: 2 ANPIIPWIGGKRRLADHIIPRFPK--HDCYVEVFAGGAALYFMRP-PARVEVINDINGEL 58 Query: 889835 INLFRILQRHYPQLLEIMRFQICSRREFDRLRLTDPATLTDLERAARFLYLQRLSFGGKP 889656 +NL+R++Q H + + ++ + SR+ F+ L+ T P TLTD++RAARF YLQ+ FGGK Sbjct: 59 VNLYRVVQHHLEEFVRQFKWALTSRQVFEWLKHTVPETLTDIQRAARFYYLQKSCFGGKL 118 Query: 889655 NG-SFGISPGNGPLFSLARLEPLLDAARTRLDGVVFECLDWADLIPRYDTAETLFYLDPP 889479 G +FG + P +L R+E L AA RL E LDWA I RYD TLFYLDPP Sbjct: 119 EGQTFGTATTTVPGLNLLRIEEELSAAHIRLANAYIERLDWATCIDRYDRPHTLFYLDPP 178 Query: 889478 YFGGENDYGKGLFDRAQFARIAEILGSLKGAFLLSINDTPEIRALFGRFHLEPVRLNYSV 889299 YF E YG F ++ ++AE L S+KG ++S+ND PEIR +F FH+E V + Y++ Sbjct: 179 YFETEG-YGVA-FPFTEYEKMAERLRSIKGRAIVSLNDHPEIRRVFAGFHIESVPIQYTI 236 Query: 889298 SAAGSTEAQELLV 889260 E +EL++ Sbjct: 237 GGGKGVERRELII 249 >ref|NP_758919.1|ORF26 Length = 320 Score = 192 bits (488), Expect = 4e-47 Identities = 115/316 (36%), Positives = 171/316 (54%), Gaps = 1/316 (0%) Frame = -1 Query: 903599 INILPNLYTRLGQMGLFQFEG-VTQRSVIIEQAEGVLSLLPSQPWGGPATVGGRERRSMR 903423 +N+LP Y LF E V R++++E+ GVL+L+ S+ G V R +R +R Sbjct: 1 MNLLPVNYG--DSRALFAREKKVRTRTILVEEKNGVLTLIQSREPGSTENVAKRGKRKVR 58 Query: 903422 SFALPHIPHDDVITAADVQGQPALGSTGQADPLAEVMTRKLALMRRKHAATREYMEMNAL 903243 SF +PH+P +DVI + +G G+T A +E++ + M+ H T E++ M A Sbjct: 59 SFVIPHLPLEDVILPDEYEGLRGFGTTALAAK-SELVKERXETMKSSHDITHEHLRMGAK 117 Query: 903242 RGVVKDGAGLTLYDYFAEFGLARISVDFLLGTAGTNVQAKCREVLRAVEEELKGESMTGV 903063 +G + D G LYD +AEFG+ + ++ F L NV CR+VLR VE+ L+G+ M V Sbjct: 118 KGQILDADGTVLYDLYAEFGITKKTIYFGLDNKDANVAESCRQVLRHVEDNLRGDVMKDV 177 Query: 903062 TALVSPEFFDKLIGHPKVEEAYKYYASSGAQPLRQDVRRSFPFAGLLFEEYVGSVTLAGG 902883 + VS EFFDK I H V+E + + + L D R+ F F GL+F E G Sbjct: 178 SVDVSEEFFDKFIKHASVKEVFLNH-EAAVNRLGGDTRKGFKFGGLIFNENRARHVDEEG 236 Query: 902882 ASERLVPAQEGTAFPLGTMDTFRTYGAPADLLEAVNTIGQPIYARQLLDPKGRWIDLMTE 902703 R + A +G AFP GT +TF T APAD E T+G+ YA+ GR DL ++ Sbjct: 237 KETRFIKAGKGHAFPTGTTNTFFTALAPADFNETAGTLGKRYYAKMEPRRMGRGFDLHSQ 296 Query: 902702 ANILPVNKRPRLAVRI 902655 +N+LP+ RP + V + Sbjct: 297 SNVLPMCCRPGVLVEL 312 >ref|NP_536393.1|conserved hypothetical protein Length = 330 Score = 191 bits (485), Expect = 9e-47 Identities = 135/369 (36%), Positives = 163/369 (44%), Gaps = 10/369 (2%) Frame = +2 Query: 919490 MAETSTIEWTDATWNPITGCTLASPGCQFCYAADLAATRLSQHPSRAGL-ARRNAAGVAA 919666 M+E S IEW D T+NP GC PGC CYA A G A R A Sbjct: 1 MSENSKIEWCDHTFNPWEGCQKVGPGCDHCYAEARNARFAGGSAVNWGPGAPRRRTSAAN 60 Query: 919667 WTGEVRLNEQWLEQPLRWKRPRRIFVCAHADLFHEAVPDEWIDRVFAVMALAPQHTFQVL 919846 W + N + R +R+F + AD+F AV W +F +++ P + +L Sbjct: 61 WRKPLAWNAAHEQFFAARGRRQRVFCSSLADVFDNAVYPMWRVDLFDLISNTPNLDWLLL 120 Query: 919847 TKRAARMRGYVSKLDIYALEEADEWRDADHRVACDDDPNGSPAWHAQTAALEDALSAART 920026 TKR R +S + + + EW Sbjct: 121 TKRIGNARDMISSVLGSIMRDEREW----------------------------------- 145 Query: 920027 CLEAGKPLPNVWLGVSAEDQQRADERIPDLLATSAAVRFGSFEPLLGPMDVAWALGHPFG 920206 P P+VWLG + +Q AD IP LLA A VRF S EPLLGP+D+ + H + Sbjct: 146 ------PWPHVWLGATIVNQAEADRDIPKLLAVPARVRFLSMEPLLGPVDLRF---HIYS 196 Query: 920207 IAAGFLQRGHFSPGAEKLR-----GLDWIIVGGESGRHARPMHPAWARSLRDQAQAAGVP 920371 G R H +LR GL W+I GGESG ARPMHP WARSLRDQ AAGVP Sbjct: 197 EPTGNF-RTHGGKRQLELRRPADGGLHWVIAGGESGHGARPMHPDWARSLRDQCAAAGVP 255 Query: 920372 FLFKQWGEWA----RADKLLPGHPGDVTYWPXXXXXXXXXXXXXXXXWSLRRVGKRAAGR 920539 FLFKQWGEWA KLLP T WP L RVGK+A GR Sbjct: 256 FLFKQWGEWAPRTTDEQKLLPVPCSRTTSWPDGTVGCGDYQSNGDYGKCLFRVGKKATGR 315 Query: 920540 RLDGRTWDE 920566 LDGR DE Sbjct: 316 MLDGRRHDE 324 >ref|NP_046900.1|gp5 Length = 447 Score = 170 bits (430), Expect = 2e-40 Identities = 114/327 (34%), Positives = 161/327 (49%), Gaps = 11/327 (3%) Frame = +3 Query: 739407 NYPMIAGRVFGTPLLVDPVKGAAFLAGLGPRLVNXXXXXXXXXXXXPDRVA----EAGRI 739574 N P IA F PL+++P F L +L D VA +AG+I Sbjct: 7 NLPHIASMAFNEPLMLEPAYARVFFCALAGQL---------GITRLTDTVAGITLDAGQI 57 Query: 739575 APRASVLLDDAGDARREAGRPLYRVEGGVAVIEVTGTLVHRGGWIGQSSGTTSYEGLMAQ 739754 A ++ DD D Y+V GVAV+ V+GTLV + + SG T Y G++A+ Sbjct: 58 AEPLALFGDD--DDMEPRPSRSYQVANGVAVLPVSGTLVSKTRSLQPYSGMTGYNGIIAR 115 Query: 739755 ITAAVADPSVRGIALEIDSYGGEVAGLFDLADTIRAARAVKPVRXXXXXXXXXXXXXXXX 739934 + A++DP V GI L++D+ GG V+G FD AD I R +KP+ Sbjct: 116 LQQAISDPGVDGILLDMDTPGGMVSGAFDCADIIARMRDIKPIWALANDMNCSAGQLIAS 175 Query: 739935 XXERIVLPRTGAVGSIGVLLVHADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRA 740114 R ++ +T GSIGV++ H+++ A+ GV V+LI++G HKVDGNPYE LPE VRA Sbjct: 176 SASRRLVTQTARTGSIGVMMAHSNYGAALKTNGVEVSLIYSGDHKVDGNPYEKLPEDVRA 235 Query: 740115 DLQARVEASRGLFAETVAAGRGARLTRQQALATEAQXXXXXXXXXXXXXXEVSDLRSAFA 740294 D Q R++A+R +FAE V+A G ++ Q L TEA E+ + A Sbjct: 236 DFQTRIDATRQMFAEKVSAYTG--MSVQDVLDTEAAVFSGQESVDNGLADELVNNTDALG 293 Query: 740295 AFRAELSHPH-------LPSPRAGAPA 740354 R L +PSP A A A Sbjct: 294 VMREALDRRKKITIGGTMPSPSASAVA 320 Score = 169 bits (427), Expect = 5e-40 Identities = 106/275 (38%), Positives = 148/275 (53%), Gaps = 4/275 (1%) Frame = -1 Query: 905612 NYPMIAGRVFGTPLLVDPVKGAAFLAGLGPRLVNXXXXXXXXXXXAPDRVA----EAGRI 905445 N P IA F PL+++P F L +L D VA +AG+I Sbjct: 7 NLPHIASMAFNEPLMLEPAYARVFFCALAGQL---------GITRLTDTVAGITLDAGQI 57 Query: 905444 APRASVLLDDAGDARREAGRPLYLVEGGVAVIEVTGTLVHRGGWIGQSSGTTSYEGLMAQ 905265 A ++ DD D Y V GVAV+ V+GTLV + + SG T Y G++A+ Sbjct: 58 AEPLALFGDD--DDMEPRPSRSYQVANGVAVLPVSGTLVSKTRSLQPYSGMTGYNGIIAR 115 Query: 905264 ISAAVADPSVRGIALEIDSYGGEVAGLFDLADAIRAARAVKPVRXXXXXXXXXXXXXXXX 905085 + A++DP V GI L++D+ GG V+G FD AD I R +KP+ Sbjct: 116 LQQAISDPGVDGILLDMDTPGGMVSGAFDCADIIARMRDIKPIWALANDMNCSAGQLIAS 175 Query: 905084 XAERIVLPRTGAVGSIGVLLVHADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRA 904905 A R ++ +T GSIGV++ H+++ A+ GV V+LI++G HKVDGNPYE LPE VRA Sbjct: 176 SASRRLVTQTARTGSIGVMMAHSNYGAALKTNGVEVSLIYSGDHKVDGNPYEKLPEDVRA 235 Query: 904904 DLQARVEASRALFAETVAAGRGARLSRQQALATEA 904800 D Q R++A+R +FAE V+A G +S Q L TEA Sbjct: 236 DFQTRIDATRQMFAEKVSAYTG--MSVQDVLDTEA 268 Score = 60.5 bits (145), Expect = 2e-07 Identities = 58/222 (26%), Positives = 90/222 (40%), Gaps = 8/222 (3%) Frame = +2 Query: 760124 FTVARGLAVVPVRGILTPNMAQYERWFGWATYHGLAETMAHLAASEDAAAIVLEIDSPGG 760303 + VA G+AV+PV G L + + G Y+G+ + + I+L++D+PGG Sbjct: 78 YQVANGVAVLPVSGTLVSKTRSLQPYSGMTGYNGIIARLQQAISDPGVDGILLDMDTPGG 137 Query: 760304 LVCGXXXXXXXXXXXXXVKPVHALVXXXXXXXXXXXXXXXXEIVMTPGAVAGSIGVALTA 760483 +V G +KP+ AL ++T A GSIGV + Sbjct: 138 MVSGAFDCADIIARMRDIKPIWALANDMNCSAGQLIASSASRRLVTQTARTGSIGVMM-- 195 Query: 760484 AAHVQPGA----NGAQI-FEMSSRHARAKRP-DASTEAGRAELQRSLDEXXXXXXXXXXX 760645 AH GA NG ++ S H P + E RA+ Q +D Sbjct: 196 -AHSNYGAALKTNGVEVSLIYSGDHKVDGNPYEKLPEDVRADFQTRIDAT---------- 244 Query: 760646 GRAIPAAELAA--RLSVTDDPQDGGATFRAPEAIRRGLADRI 760765 R + A +++A +SV D A F E++ GLAD + Sbjct: 245 -RQMFAEKVSAYTGMSVQDVLDTEAAVFSGQESVDNGLADEL 285 >ref|NP_758937.1|ORF46 Length = 293 Score = 169 bits (427), Expect = 5e-40 Identities = 106/276 (38%), Positives = 142/276 (51%), Gaps = 1/276 (0%) Frame = +3 Query: 422532 MIPAFRLTVDGEDATGAVADRLLSLVITDEDGTKADRLEIELDDRDGRLAFPDTEARIEV 422711 M P FR+ D D T +A+RL+ + ITDE G ++D L I +DD DG LA P AR+ V Sbjct: 1 MRPQFRVFADDRDITSRIAERLIEMTITDEAGFQSDALTISVDDADGVLAVPRKGARLAV 60 Query: 422712 ALGFAGQPLAAMGVFAVDGVAGSGPRQSLRITATAADLKGEIRSPRTRAWRNRSLRDIVA 422891 LG+ LA MG F VD SGP + I A ADL+ E+++ +TR+W ++ DIV Sbjct: 61 HLGYEETGLAYMGEFVVDEPELSGPPDKIVIRARGADLRQELKTSKTRSWDKVTIDDIVR 120 Query: 422892 TVAAEAGLRPVVGESVAGTAWDYLAQTAESNLHFLTRIAATLDATAKPAGGALVVQRRGE 423071 VA E L+P V E +A T +++ QT ES+LHFLTR+A DA +KPAG L+ R Sbjct: 121 AVAGEHNLQPKVAEQLAATFIEHIDQTGESDLHFLTRLAKEYDAISKPAGPNLLFAPRNL 180 Query: 423072 GRTAAGDPLTPPVLPPWRLSDWSWSFEGRSVYRAAEAEWTETGSGITHRVRVGSGT-PLK 423248 G+T +G L P VL ++ + RS A W + VG T P K Sbjct: 181 GKTVSGKDLPPIVLAKSDVTTYRLVLADRSDIGHVVAYWQDKAKARRTGETVGDKTKPGK 240 Query: 423249 KLRHAYPTXXXXXXXXXXVLSGAARAAMTLEARLAG 423356 LR YPT L+ R L+ L G Sbjct: 241 TLRKTYPTAEEARAAAASELASLQRGRKNLDITLPG 276 >ref|NP_040584.1|capsid component Length = 439 Score = 162 bits (410), Expect = 4e-38 Identities = 102/271 (37%), Positives = 142/271 (52%) Frame = -1 Query: 905612 NYPMIAGRVFGTPLLVDPVKGAAFLAGLGPRLVNXXXXXXXXXXXAPDRVAEAGRIAPRA 905433 N P IA F PL+++P F L +L D V+ A A Sbjct: 7 NLPHIASMAFNEPLMLEPAYARVFFCALAGQL---------GISSLTDAVSGDSLTAQEA 57 Query: 905432 SVLLDDAGDARREAGRPLYLVEGGVAVIEVTGTLVHRGGWIGQSSGTTSYEGLMAQISAA 905253 L +GD Y V G+AV+ V+GTLV R + SG T Y G++A++ A Sbjct: 58 LATLALSGDDDGPRQARSYQVMNGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQA 117 Query: 905252 VADPSVRGIALEIDSYGGEVAGLFDLADAIRAARAVKPVRXXXXXXXXXXXXXXXXXAER 905073 +DP V GI L++D+ GG VAG FD AD I R +KPV A R Sbjct: 118 ASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASR 177 Query: 905072 IVLPRTGAVGSIGVLLVHADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQA 904893 ++ +T GSIGV++ H+++ A+ +GV +TLI++G HKVDGNPY LP+ VR LQ+ Sbjct: 178 RLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQS 237 Query: 904892 RVEASRALFAETVAAGRGARLSRQQALATEA 904800 R++A+R +FA+ V+A G LS Q L TEA Sbjct: 238 RMDATRQMFAQKVSAYTG--LSVQVVLDTEA 266 Score = 161 bits (408), Expect = 7e-38 Identities = 100/271 (36%), Positives = 142/271 (52%) Frame = +3 Query: 739407 NYPMIAGRVFGTPLLVDPVKGAAFLAGLGPRLVNXXXXXXXXXXXXPDRVAEAGRIAPRA 739586 N P IA F PL+++P F L +L D V+ A A Sbjct: 7 NLPHIASMAFNEPLMLEPAYARVFFCALAGQL---------GISSLTDAVSGDSLTAQEA 57 Query: 739587 SVLLDDAGDARREAGRPLYRVEGGVAVIEVTGTLVHRGGWIGQSSGTTSYEGLMAQITAA 739766 L +GD Y+V G+AV+ V+GTLV R + SG T Y G++A++ A Sbjct: 58 LATLALSGDDDGPRQARSYQVMNGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQA 117 Query: 739767 VADPSVRGIALEIDSYGGEVAGLFDLADTIRAARAVKPVRXXXXXXXXXXXXXXXXXXER 739946 +DP V GI L++D+ GG VAG FD AD I R +KPV R Sbjct: 118 ASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASR 177 Query: 739947 IVLPRTGAVGSIGVLLVHADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQA 740126 ++ +T GSIGV++ H+++ A+ +GV +TLI++G HKVDGNPY LP+ VR LQ+ Sbjct: 178 RLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHLPDDVRETLQS 237 Query: 740127 RVEASRGLFAETVAAGRGARLTRQQALATEA 740219 R++A+R +FA+ V+A G L+ Q L TEA Sbjct: 238 RMDATRQMFAQKVSAYTG--LSVQVVLDTEA 266 Score = 53.5 bits (127), Expect = 3e-05 Identities = 36/128 (28%), Positives = 54/128 (42%) Frame = +2 Query: 760124 FTVARGLAVVPVRGILTPNMAQYERWFGWATYHGLAETMAHLAASEDAAAIVLEIDSPGG 760303 + V G+AV+PV G L + + G Y+G+ + A+ I+L++D+PGG Sbjct: 76 YQVMNGIAVLPVSGTLVSRTRALQPYSGMTGYNGIIARLQQAASDPMVDGILLDMDTPGG 135 Query: 760304 LVCGXXXXXXXXXXXXXVKPVHALVXXXXXXXXXXXXXXXXEIVMTPGAVAGSIGVALTA 760483 +V G +KPV AL ++T A GSIGV + Sbjct: 136 MVAGAFDCADIIARVRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMM-- 193 Query: 760484 AAHVQPGA 760507 AH GA Sbjct: 194 -AHSNYGA 200 >ref|NP_945069.1|gp38 Length = 323 Score = 159 bits (401), Expect = 5e-37 Identities = 123/380 (32%), Positives = 160/380 (42%), Gaps = 21/380 (5%) Frame = +2 Query: 919490 MAETSTIEWTDATWNPITGCTLASPGCQFCYAADLAA-----TRLSQHPSRAGLARRNAA 919654 M+E S IEW D T+NP GC PGC CYA A T ++ P A + Sbjct: 1 MSENSKIEWCDHTFNPWEGCQKVGPGCDHCYAEARNARFSGGTAVNWGPG----APQRRT 56 Query: 919655 GVAAWTGEVRLNEQWLEQPLRWKRPRRIFVCAHADLFHEAVPDEWIDRVFAVMALAPQHT 919834 A W ++ N + R +R+F + AD+F V W +F ++A P Sbjct: 57 SPANWRKPMKWNRDGAFYAIHGHR-QRVFCASLADVFDNTVDPAWRADLFRLIADTPNLD 115 Query: 919835 FQVLTKRAARMRGYVSKLDIYALEEADEWRDADHRVACDDDPNGSPAWHAQTAALEDALS 920014 + +LTKR + + ++ I L + Sbjct: 116 WLLLTKRIGNVAAMLREIGIDRLPD----------------------------------- 140 Query: 920015 AARTCLEAGKPLPNVWLGVSAEDQQRADERIPDLLATSAAVRFGSFEPLLGPMDVAWAL- 920191 NVW+G + +Q+ AD IP LLA A VRF S EPLLG +D+ + + Sbjct: 141 -------------NVWIGATIVNQEEADRDIPKLLAVPARVRFLSMEPLLGSVDLRFHIY 187 Query: 920192 GHPFGIAAGFLQRGHFSPGAEKLRGLDWIIVGGESGRHARPMHPAWARSLRDQAQAAGVP 920371 P G + F GL W+I GGESG ARPMHP WARSLRDQ AA VP Sbjct: 188 SEPTGNFRTHGGKRQFELRRPADGGLHWVIAGGESGHGARPMHPDWARSLRDQCAAADVP 247 Query: 920372 FLFKQWGE-------------WARADKL--LPGHPGDVTYWPXXXXXXXXXXXXXXXXWS 920506 FLFKQWGE + R D++ LPG W Sbjct: 248 FLFKQWGEHSLAYDRDRDDPDYRRCDRMARLPGR------W---INLAGGHGLNGERVHY 298 Query: 920507 LRRVGKRAAGRRLDGRTWDE 920566 RVGK+AAGR LDGRT +E Sbjct: 299 AERVGKKAAGRLLDGRTHNE 318 >ref|NP_918994.1|putative head-tail preconnector protein Length = 355 Score = 142 bits (358), Expect = 5e-32 Identities = 88/226 (38%), Positives = 120/226 (53%), Gaps = 1/226 (0%) Frame = +3 Query: 739641 YRVEGGVAVIEVTGTLVHRGGWIGQSSG-TTSYEGLMAQITAAVADPSVRGIALEIDSYG 739817 + G+A+I + GT+++R + S G T Y + AQ+ AA+AD V GI L+++SYG Sbjct: 71 FAFSNGLAIIPLQGTMINRFNY---SFGYVTGYNFVRAQLNAALADDDVEGIILDVNSYG 127 Query: 739818 GEVAGLFDLADTIRAARAVKPVRXXXXXXXXXXXXXXXXXXERIVLPRTGAVGSIGVLLV 739997 GE AG F+LAD I AAR KP+ ++V +G GSIGV+ + Sbjct: 128 GEAAGCFELADDIYAARDEKPIMAVIDSNCYSAAYAIASAATKVVSTPSGGAGSIGVVAM 187 Query: 739998 HADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASRGLFAETVAAGR 740177 H D S+ + D G+ +T IHAG HKVDGNPYEA + V+A +QA V AS F VA R Sbjct: 188 HVDMSEMLDDMGIKITFIHAGDHKVDGNPYEAASKEVKASIQADVNASYDEFVSLVARNR 247 Query: 740178 GARLTRQQALATEAQXXXXXXXXXXXXXXEVSDLRSAFAAFRAELS 740315 G + Q+ T+AQ V+ A AAF ELS Sbjct: 248 G--MDSQKVRDTQAQTYRADDALNLGLIDAVAKPVDAVAAFFNELS 291 Score = 139 bits (350), Expect = 4e-31 Identities = 81/195 (41%), Positives = 113/195 (57%), Gaps = 1/195 (0%) Frame = -1 Query: 905378 YLVEGGVAVIEVTGTLVHRGGWIGQSSG-TTSYEGLMAQISAAVADPSVRGIALEIDSYG 905202 + G+A+I + GT+++R + S G T Y + AQ++AA+AD V GI L+++SYG Sbjct: 71 FAFSNGLAIIPLQGTMINRFNY---SFGYVTGYNFVRAQLNAALADDDVEGIILDVNSYG 127 Query: 905201 GEVAGLFDLADAIRAARAVKPVRXXXXXXXXXXXXXXXXXAERIVLPRTGAVGSIGVLLV 905022 GE AG F+LAD I AAR KP+ A ++V +G GSIGV+ + Sbjct: 128 GEAAGCFELADDIYAARDEKPIMAVIDSNCYSAAYAIASAATKVVSTPSGGAGSIGVVAM 187 Query: 905021 HADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASRALFAETVAAGR 904842 H D S+ + D G+ +T IHAG HKVDGNPYEA + V+A +QA V AS F VA R Sbjct: 188 HVDMSEMLDDMGIKITFIHAGDHKVDGNPYEAASKEVKASIQADVNASYDEFVSLVARNR 247 Query: 904841 GARLSRQQALATEAQ 904797 G + Q+ T+AQ Sbjct: 248 G--MDSQKVRDTQAQ 260 Score = 49.7 bits (117), Expect = 4e-04 Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 7/221 (3%) Frame = +2 Query: 760124 FTVARGLAVVPVRGILTPNMAQYERWFGWATYHGLAETMAHLA-ASEDAAAIVLEIDSPG 760300 F + GLA++P++G + N Y FG+ T + + A A +D I+L+++S G Sbjct: 71 FAFSNGLAIIPLQGTMI-NRFNYS--FGYVTGYNFVRAQLNAALADDDVEGIILDVNSYG 127 Query: 760301 GLVCGXXXXXXXXXXXXXVKPVHALVXXXXXXXXXXXXXXXXEIVMTPGAVAGSIGVALT 760480 G G KP+ A++ ++V TP AGSIGV Sbjct: 128 GEAAGCFELADDIYAARDEKPIMAVIDSNCYSAAYAIASAATKVVSTPSGGAGSIGV--- 184 Query: 760481 AAAHVQPGA----NGAQI-FEMSSRHARAKRP-DASTEAGRAELQRSLDEXXXXXXXXXX 760642 A HV G +I F + H P +A+++ +A +Q ++ Sbjct: 185 VAMHVDMSEMLDDMGIKITFIHAGDHKVDGNPYEAASKEVKASIQADVNASYDEFVSLVA 244 Query: 760643 XGRAIPAAELAARLSVTDDPQDGGATFRAPEAIRRGLADRI 760765 R + + ++ D Q T+RA +A+ GL D + Sbjct: 245 RNRGMDSQKVR-------DTQ--AQTYRADDALNLGLIDAV 276 >ref|NP_046685.1|putative DNA polymerase Length = 1305 Score = 142 bits (358), Expect = 5e-32 Identities = 185/841 (21%), Positives = 348/841 (41%), Gaps = 93/841 (11%) Frame = -1 Query: 645998 RLYVELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALIC 645819 + ++ELQ L+E + +++A L ++ T D ++ +PE H A + Sbjct: 202 KFFIELQP------ALSEEQIYCNKKLIDIANGYDLQMIVTTDAHYLRPEDRAIHQAFLN 255 Query: 645818 IAEGAY-------------VDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIAR 645678 +G VD++ R Y E + +A++NT+ I Sbjct: 256 AKDGEREVDSFYEACFVQNVDEIHER-----MDYIDKEV--------IDQAIKNTMLIGE 302 Query: 645677 RCAFKAAKRPPILPRF---------------------------ADDEVEELRRQAKEGLA 645579 + PI+P+ AD++ L + ++G Sbjct: 303 MIEDYTIEHEPIIPKMELPNFKLRHLFKPAYDQYEYIKKMSESADEQDRYLLKLIEDGFE 362 Query: 645578 ARLAVIPHAAPV-EDYEARLSFELGIIEQMG------FPGYFLIVADFIK--WGKANGIP 645426 +L R++ ELG + ++ Y++ V + I W G Sbjct: 363 EKLKTSELTREAFHKILNRINVELGELWEISQKLNQSMSSYYITVREIINIIWDDECGGD 422 Query: 645425 --VGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPDFDIDFCMDRREEVI 645252 VG RGS AG LV Y L T ++P++Y L R ++ R +PD DID +R++++ Sbjct: 423 SLVGAARGSAAGYLVNYLLDNTQINPMQYDLPHWRHIHKSRPDLPDIDIDTEGSKRQKIL 482 Query: 645251 RYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPVEGVKPVSIQK 645072 + ++E++G +V QI TFG SK+A++ R L + LS MIP E ++ Sbjct: 483 KALRERFGDKRVLQIATFGTEGSKSALQTACRGLGIDNDISQYLSGMIPFERGSNWPLKH 542 Query: 645071 ALADEPR-----LREAAKTEEVVKRLLDYGMQIEGLLRNASTHAAGVVIGDRPLDELVPL 644907 + ++E + E L + ++IEGL S+HAAGV+I + + + Sbjct: 543 CFYGDKETGRKPIKEFIREVEQYPNLKETALKIEGLTNKRSSHAAGVIIFNDEYTKSNAM 602 Query: 644906 YQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAID-LIRGTGRPLHMAADGRV 644730 + P+ TQFNM EA G VKFD L ++ L I+ +D LI + G + Sbjct: 603 MKTPKGAY-ITQFNMGDSEAMGSVKFDLLTIEALDKIRVTLDQLIENN----EIEWQGSL 657 Query: 644729 LYDPPPGAENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKPTCIEDIV-- 644556 D+ I ED +E+ + + +FQ + ++ ++KP + + Sbjct: 658 KETYNKYIHPDV--IEYEDDKLWEMAGNGEIMDLFQFSTEVGHQSVVKVKPKNLLEAAVT 715 Query: 644555 -ALVALYRPGPMENIPVYCEVKHGLRD----------LESLHPTIDPILKETQGIIVYQE 644409 +L+ L G + + Y + K+ L E ++ LK+ G+ QE Sbjct: 716 NSLMRLMSDGEEQPVDTYVKYKNNLNKWYEEMTRYGLSEKEIRVMERHLKDIYGVADTQE 775 Query: 644408 QVMQIA--QVMGGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVF 644235 VMQ+ + + + + ++ LR+++ KK E++ KE + K G V+ Sbjct: 776 VVMQMVMDKDIANFDIKESNYLRKSIAKK-KEDVLKEVEELFFKKGKEIGTSDNLLNYVW 834 Query: 644234 DL-LEKFANYGFNKSHAAAYAVVSYQTAWLKANH-PVEFMAAVMNCDIHLTD-------- 644085 ++ ++ Y F+ H AY++++ Q L + P+ + A + + D Sbjct: 835 NVQFKRQFGYSFSLLHTLAYSIIALQELNLNYRYNPLYWNTACLTVNSGGIDTEDTKDNK 894 Query: 644084 --------KLAVYKREVDKLGIRTVAPCVNASLATF--TVRDGAVVYALGALKNVGVEAM 643935 K+A + + GI+ P +N + F + + ++++ L + +G + + Sbjct: 895 KTAATNYGKVASAIGNIRQRGIKIDLPDINKADFGFRTDINNNSILFGLKGMNGIGDDVI 954 Query: 643934 RLIVEARGDRPFATLFDMARRVELKRIGKR-PLEMLARAGAFDALDRNRARVFEALDALV 643758 IV +RP++ D R+ I K+ + L + G FD+ NR + +A +L+ Sbjct: 955 HHIVL---NRPYSDFNDFIERMFKSGIIKKGQVIQLIKGGCFDSFG-NRQEIMKAFISLI 1010 Query: 643757 A 643755 + Sbjct: 1011 S 1011 >ref|NP_490627.1|hypothetical protein Length = 424 Score = 140 bits (353), Expect = 2e-31 Identities = 100/319 (31%), Positives = 151/319 (47%), Gaps = 4/319 (1%) Frame = +3 Query: 422535 IPAFRLTVDGEDATGAVADRLLSLVITDEDGTKADRLEIELDDRDGRLAFPDTEARIEVA 422714 +P FRLTVDG D ++ RL++L +TD G +AD+L + L D DG LA P A + + Sbjct: 28 VPVFRLTVDGNDIAQLISPRLIALDLTDNRGLEADQLSVTLSDHDGLLAIPPRGAVLHLW 87 Query: 422715 LGFAGQPLAAMGVFAVDGVAGSGPRQSLRITATAADLKGEIRSPRTRAWRN-RSLRDIVA 422891 LG++ L G + VD SG L I A +ADL+ ++ R R+W + ++L D++ Sbjct: 88 LGWSDSGLVDKGTYTVDETEHSGAPDVLSIRARSADLRKGLKVKRERSWSSPKTLGDVLT 147 Query: 422892 TVAAEAGLRPVVGESVAGTAWDYLAQTAESNLHFLTRIAATLDATAKPAGGALVVQRRGE 423071 +A L+PV+ ++AG L Q ES+ + LTR+ DA A G L+ G Sbjct: 148 DIALGNNLKPVLAPALAGLPILQLDQANESDANLLTRLGEDFDAVATVKAGCLLCLPAGG 207 Query: 423072 GRTAAGDPLTPPVLPPWRLSDWSWSFEGRSVYRAAEAEWTETGSGITHRVRVGS-GTPLK 423248 G+TA+G L L + R Y A + + S G+ G LK Sbjct: 208 GKTASGLALPHINLTRQDGDQHRYLQADRDSYDGVRAYFYDVNSAKKQEAIAGAKGDNLK 267 Query: 423249 KLRHAYPTXXXXXXXXXXVLSGAARAAMTLEARLAGFEPGLLGGASVTVTGLRPELNG-D 423425 LRH Y + R + TL LA P L+ + T+ G++ E++ Sbjct: 268 DLRHTYSDRQSALRAARAEWNRLQRGSATLSYALARGRPDLIPELTYTLQGVKTEIDAII 327 Query: 423426 WHLESVSHQLD-PGGLVTS 423479 W+ +V H L GG +TS Sbjct: 328 WYGGNVQHSLSADGGYITS 346 >ref|NP_944320.1|gp12 Length = 181 Score = 139 bits (350), Expect = 4e-31 Identities = 93/223 (41%), Positives = 116/223 (52%) Frame = +1 Query: 921859 LRILIGCETSGVMRRAFVARGHDVWSCDLLPAEDRSNRHIVGDVRDHLSDGWDLLIVAHP 922038 +R+L+ CE SG +R AF+A+GHD SCDLL E R H GDVRD + GWDL+I HP Sbjct: 1 MRVLVACEYSGRVRDAFIAKGHDALSCDLLDTEAR-GPHYKGDVRDVIDLGWDLMI-CHP 58 Query: 922039 PCTRLCNSGVRWLHEPSKRLPETYAAAEREAFARMGRKERLAFLWADLDRGAALFAACWQ 922218 PCT L SG R H +KR A ++E LAF+ LD Sbjct: 59 PCTHLAVSGAR--HFEAKR-------------ASGVQQEALAFVRYLLD----------- 92 Query: 922219 APVPRVAVENPVMNPHARARLPADLPRPQTVQPWWFGEPFFKATSFYLRGLPRLAATDRL 922398 AP+ R+A+ENPV ++ R P Q +QPW FG KAT +L+ LP L TD + Sbjct: 93 APISRIALENPVSIISSQIRKP-----DQVIQPWQFGHGETKATCLWLKELPPLVPTDIV 147 Query: 922399 TPPRPGTPEHKRWSAVHRAPPGPGRWKFRSRTFEGVAEACADQ 922527 P VHR P P RWK RSRT+ G+A A A Q Sbjct: 148 DGREP---------RVHRMAPSPDRWKERSRTYPGIAAAMAAQ 181 Score = 132 bits (331), Expect = 6e-29 Identities = 89/223 (39%), Positives = 111/223 (49%) Frame = -2 Query: 737953 LRILIGCEASGVMRRAFATRGHDVWSCDLLPAEDRSNRHIVGDVRDHLADGWDLLIVAHP 737774 +R+L+ CE SG +R AF +GHD SCDLL E R H GDVRD + GWDL+I HP Sbjct: 1 MRVLVACEYSGRVRDAFIAKGHDALSCDLLDTEAR-GPHYKGDVRDVIDLGWDLMI-CHP 58 Query: 737773 PCTRLCNSGVRWLHEPSKRLPETYAAAEREAYLRMSREERLAFLWADLDRGAALFAACWQ 737594 PCT L SG R H +KR ++E LAF+ LD Sbjct: 59 PCTHLAVSGAR--HFEAKRASGV-------------QQEALAFVRYLLD----------- 92 Query: 737593 APVPRVAVENPVMNPHXXXXXXXXXXXPQTVQPWWFGEPFFKATSFYLRGLPRLAATNRL 737414 AP+ R+A+ENPV Q +QPW FG KAT +L+ LP L T+ + Sbjct: 93 APISRIALENPV-----SIISSQIRKPDQVIQPWQFGHGETKATCLWLKELPPLVPTDIV 147 Query: 737413 TPPRPGTPEHKRWSAVHRASPGPDRWKFRSRTFEGVAEACADQ 737285 P VHR +P PDRWK RSRT+ G+A A A Q Sbjct: 148 DGREP---------RVHRMAPSPDRWKERSRTYPGIAAAMAAQ 181 >ref|NP_542569.1|ribonucleotide reductase Length = 805 Score = 138 bits (348), Expect = 7e-31 Identities = 79/200 (39%), Positives = 110/200 (55%), Gaps = 2/200 (1%) Frame = -2 Query: 638671 KYRLKDGAGHPVDGSVEDTWRRIAR--ALAEVEAEPALWEDRFYSALEDFRFLPXXXXXX 638498 +Y KD G+ ++G+ +D +RR+A A AE + + W D F ++ RF+P Sbjct: 44 RYFRKDSEGNIIEGA-DDLFRRVAENVAGAEEDGDFDTWADEFEHQMKTLRFMPNSPTLM 102 Query: 638497 XXXXXXXXTLFNCFVMGTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGV 638318 L CFV+ D M IF+ ++AAL Q GGG+GY FS +RP+GA + Sbjct: 103 NAGTDMNQ-LSACFVIEP-RDDMEDIFETAQQAALIFQSGGGVGYAFSHLRPKGAFINST 160 Query: 638317 AADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKKDPARLRMFNL 638138 +ASGP+SFM V+D C + G RRGA M +R DHPDI FI AK++ FN+ Sbjct: 161 GGEASGPVSFMRVFDETCNQVKQGGKRRGAQMGILRADHPDIGRFIVAKRNEGEFANFNI 220 Query: 638137 SVLVTDAFMEAVKADGPWEL 638078 SV TD F+EAV A + L Sbjct: 221 SVATTDNFIEAVDAQESYTL 240 Score = 136 bits (343), Expect = 3e-30 Identities = 118/411 (28%), Positives = 171/411 (41%), Gaps = 71/411 (17%) Frame = -2 Query: 638050 LQARDLWNRIMRSTYDFAEPGVIFIDRINQMNNLAYCE----TISATNPCGEQPLPPYGA 637883 L A +W+ ++ + EPG+ + N+ ++ E ++ATNPC EQ L Y A Sbjct: 324 LPAAFIWDVMIDGAWRNGEPGLFNFEESNRQHSFDVEEYPEFRMNATNPCAEQMLVEYEA 383 Query: 637882 CLLGSVNLARLVAKP---------------------------FSXXXXXXXXXXXXXXXX 637784 C LG +NL+ ++++ + Sbjct: 384 CNLGHINLSLMLSEDAPTYDEFLSDKLEDVASGDLSTREAVEWYFETAVDFNELDRTIEA 443 Query: 637783 AVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYGSEEAAARTEAWM 637604 R +DNVV S FP+PE R+IGLG+ G A L +G+ YG++++ M Sbjct: 444 GTRFLDNVVTQSDFPIPEITERVGGMRKIGLGIMGFAQMLYQMGVPYGTQDSYEVARCVM 503 Query: 637603 KAIARSAYLASADLAREKGAFPLFEADKYLGSGSLTHMDE--------DVRAAIRTHGIR 637448 + I R AS LA E+GAF ++ KY T DE D IR Sbjct: 504 RYIDRRGTWASHRLALERGAFSYWDKSKY---ADPTEYDEWFAARTGLDPEDWAGGFPIR 560 Query: 637447 NALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRKVLQK-DGSRTEEEVVDYAVRLWREQ 637271 N +T+IAPTGT S+ GN + G EP + A + V + G E DY +R E Sbjct: 561 NHNITTIAPTGTTSM-IGNTTGGCEPAYNVANFKNVSEDIQGDDLLVEFDDYFLRTLEEN 619 Query: 637270 ----------------------MGDAPLPD----YFVNAQTLAPLEHVRMQAAAQKWIDS 637169 + D +PD FV Q L+ +H MQ A Q++ DS Sbjct: 620 DLDVDAVKEEAETLMRNNEFDGVNDLSIPDEIAEIFVTTQDLSSEQHGLMQRAFQEFCDS 679 Query: 637168 SISKTINCPEDIGFEEFADVYLAAWDQG-----CKGCTTYRPNEVTGSVLS 637031 ISKT+N P + ++ AD Y A D+G KG T YR VL+ Sbjct: 680 GISKTVNLPNEATHDDVADAYQLALDEGRRGAVIKGLTVYRDGSRDQQVLT 730 >ref|NP_597931.1|PhoH-like protein Length = 384 Score = 138 bits (347), Expect = 9e-31 Identities = 78/205 (38%), Positives = 115/205 (56%), Gaps = 1/205 (0%) Frame = -3 Query: 692415 PRTEAQKAYVANLFDHELAFGIGPAGTGKTYLAVAVGVTMLIGGVVDRIILSRPAVEAGE 692236 PRT+ QK + L F +GPAGTGKTY+ + +D+I+++RP V G+ Sbjct: 180 PRTDKQKDLIDALKTSRQVFILGPAGTGKTYVTATYASDLYTTKEIDKIVITRPHVAVGK 239 Query: 692235 RLGFLPGDMKEKIDPYMQPLYDALNDFLPQKQLMKLMEEKRIEIAPLAFMRGRTLSNAFV 692056 LGFL GD+ EK P+ P+ D L L + + ++ IE+APLA MRGR+ NAF+ Sbjct: 240 ELGFLKGDLTEKTMPWALPVLDVLEKHLGKGAVETGIKNGNIEMAPLALMRGRSFDNAFI 299 Query: 692055 VLDEAQNATTMQMKMFLTRLGEGSRMVVTGDRTQIDLPRGTASGLADAERVLKSVR-GVS 691879 ++DE QN +T ++KM LTR+GEG+ +V+ GD Q DL A GL+ + K + V Sbjct: 300 IVDETQNISTHELKMLLTRVGEGTTIVLNGDAQQSDLKE--ADGLSKVIHLAKKHQLPVP 357 Query: 691878 FNYFTAKDVVRHPLVARIIEAYEAE 691804 F D+VR + A + + E Sbjct: 358 IIEFGVDDIVRSDITAMWVRTFLKE 382 >ref|NP_958082.1|gp26 Length = 389 Score = 131 bits (329), Expect = 1e-28 Identities = 76/225 (33%), Positives = 117/225 (52%) Frame = +3 Query: 422523 GPDMIPAFRLTVDGEDATGAVADRLLSLVITDEDGTKADRLEIELDDRDGRLAFPDTEAR 422702 G + PAF LT++ +D T +DRL+SL +TD G +AD+L+IELDD DG++ P A Sbjct: 10 GASLAPAFMLTLNSQDITSNFSDRLISLTMTDNRGFEADQLDIELDDTDGKVELPLRGAV 69 Query: 422703 IEVALGFAGQPLAAMGVFAVDGVAGSGPRQSLRITATAADLKGEIRSPRTRAWRNRSLRD 422882 + + LG+ G L G F VD + G +L I A +AD +G + S R +W + +L + Sbjct: 70 LTLWLGWQGSALLNKGDFTVDEIEHRGAPDTLTIRARSADFRGTLNSRREESWHDTTLGE 129 Query: 422883 IVATVAAEAGLRPVVGESVAGTAWDYLAQTAESNLHFLTRIAATLDATAKPAGGALVVQR 423062 +V+T+A L V +S+ ++ Q+ ES+ FLTR+A AT G L+ + Sbjct: 130 LVSTIAKRNKLTASVADSLKQIPVPHIDQSQESDAVFLTRLADRNGATVSVKAGKLLFLK 189 Query: 423063 RGEGRTAAGDPLTPPVLPPWRLSDWSWSFEGRSVYRAAEAEWTET 423197 G TA+G P+ L ++ R Y A+W T Sbjct: 190 AGSALTASGKPIPQMTLTRSDGDRHQFAIADRGAYTGVTAKWLHT 234 >ref|NP_052275.1|D protein Length = 389 Score = 129 bits (323), Expect = 5e-28 Identities = 75/225 (33%), Positives = 116/225 (51%) Frame = +3 Query: 422523 GPDMIPAFRLTVDGEDATGAVADRLLSLVITDEDGTKADRLEIELDDRDGRLAFPDTEAR 422702 G + PAF LT++ +D T +DRL+SL +TD G +AD+L+IELDD DG++ P A Sbjct: 10 GTSLAPAFMLTLNSQDITSNFSDRLISLTMTDNRGFEADQLDIELDDTDGKVELPLRGAV 69 Query: 422703 IEVALGFAGQPLAAMGVFAVDGVAGSGPRQSLRITATAADLKGEIRSPRTRAWRNRSLRD 422882 + + LG+ G L G F VD + G L I A +AD +G + S R +W + ++ + Sbjct: 70 LTLWLGWQGSALLNKGDFTVDEIEHRGAPDILTIRARSADFRGTLNSRREESWHDTTIGE 129 Query: 422883 IVATVAAEAGLRPVVGESVAGTAWDYLAQTAESNLHFLTRIAATLDATAKPAGGALVVQR 423062 +V+T+A L V +S+ ++ Q+ ES+ FLTR+A AT G L+ + Sbjct: 130 LVSTIAKRNKLTASVADSLKKIPVPHIDQSQESDAVFLTRLADRNGATVSVKAGKLLFLK 189 Query: 423063 RGEGRTAAGDPLTPPVLPPWRLSDWSWSFEGRSVYRAAEAEWTET 423197 G TA+G P+ L ++ R Y A+W T Sbjct: 190 AGSAMTASGKPVPQMTLTRNDGDRHQFAIADRGAYTGVTAKWLHT 234 >ref|NP_536362.1|putative major capsid protein Length = 435 Score = 124 bits (311), Expect = 1e-26 Identities = 78/267 (29%), Positives = 123/267 (46%), Gaps = 3/267 (1%) Frame = +2 Query: 761786 RGVAAGFMVQALARTKGDRDKAARL-LEAEXXXXXXXXXXXXXXXXXXVTIPRPQAAELI 761962 +G MV+ALA +GD A++L +E V +P ++E+I Sbjct: 94 KGAKMARMVRALAAARGDAQLASKLAIERGFGEEVAMSLNTLSPGAGGVLVPENLSSEVI 153 Query: 761963 EMLXXXXXXXXXXXXTLPMPAGEMRHAKQVGSXXXXXXXXXXXXXPSQPSFDKIDQSFKK 762142 E+L TLP+ G + + G +Q FD + + KK Sbjct: 154 ELLRPKSVVRKLGARTLPLSNGNITIPRLKGGAIVGYIGADTDIPTTQQQFDDLKLTAKK 213 Query: 762143 LLGMVPIGNSLLRHSGVA--MAQLVRDDLLKVMALREDLAFLRGDGSADTPKGLRHWMLX 762316 + +VPI N L++++GV + Q+V DL + RED AF+R DG+A+TPKGLR W L Sbjct: 214 MAALVPIANDLIKYAGVNPNVDQIVVGDLTAAIGAREDKAFIRDDGTANTPKGLRFWALP 273 Query: 762317 XXXXXXXXXXXXXXXXXXIRRTVSLVEDADVGMVSPGWIMRASTKNWLASLKDPNGNPLF 762496 + + + +E+AD + PGWIM T +L L+D NGN ++ Sbjct: 274 SNVITASDASTLQKIETDLGKVILALENADANLTQPGWIMAPRTFRFLEGLRDGNGNKVY 333 Query: 762497 PSIGASAQLMGFPIRTSSQRPARRAHT 762577 P + A+ L G+P+ ++Q P T Sbjct: 334 PEL-ANGMLKGYPVGKTTQVPINLGET 359 >ref|NP_046784.1|gpD Length = 387 Score = 122 bits (306), Expect = 5e-26 Identities = 72/225 (32%), Positives = 112/225 (49%) Frame = +3 Query: 422523 GPDMIPAFRLTVDGEDATGAVADRLLSLVITDEDGTKADRLEIELDDRDGRLAFPDTEAR 422702 G + P + L +D D TG ++DRL+S+ +TD G +AD+L+IEL+D DG++ P A Sbjct: 10 GSTLTPDYMLMLDSRDITGNISDRLMSMTLTDNRGFEADQLDIELNDADGQVGLPVRGAV 69 Query: 422703 IEVALGFAGQPLAAMGVFAVDGVAGSGPRQSLRITATAADLKGEIRSPRTRAWRNRSLRD 422882 + V +G+ G L G F VD V G + I A +AD +G + S R +W + +L Sbjct: 70 LTVYIGWKGFALVCKGKFTVDEVEHRGAPDVVTIRARSADFRGTLNSRREGSWHDTTLGA 129 Query: 422883 IVATVAAEAGLRPVVGESVAGTAWDYLAQTAESNLHFLTRIAATLDATAKPAGGALVVQR 423062 IV +A L V S+AG ++ Q+ ES+ FLTR+A G L+ + Sbjct: 130 IVKAIATRNRLEASVAPSLAGIKIPHIDQSQESDAKFLTRLAERNGGEVSVKMGKLLFLK 189 Query: 423063 RGEGRTAAGDPLTPPVLPPWRLSDWSWSFEGRSVYRAAEAEWTET 423197 G+G TA+G + + ++ R Y A+W T Sbjct: 190 AGQGVTASGKKIPQVTITRSDGDRHHFAIADRGAYTGVTAKWLHT 234 >ref|NP_878226.1|gpD Length = 387 Score = 122 bits (306), Expect = 5e-26 Identities = 72/225 (32%), Positives = 113/225 (50%) Frame = +3 Query: 422523 GPDMIPAFRLTVDGEDATGAVADRLLSLVITDEDGTKADRLEIELDDRDGRLAFPDTEAR 422702 G + P + L +D D TG ++DRL+S+ +TD G +AD+L+IEL+D DG++ P A Sbjct: 10 GSTLTPDYMLMLDSRDITGNISDRLMSMTLTDNRGFEADQLDIELNDADGQVGLPVRGAV 69 Query: 422703 IEVALGFAGQPLAAMGVFAVDGVAGSGPRQSLRITATAADLKGEIRSPRTRAWRNRSLRD 422882 + V +G+ G L G F VD V G + I A +AD +G + S R +W + +L Sbjct: 70 LTVYIGWKGFALVCKGKFTVDEVEHRGAPDVVTIRARSADFRGTLNSRREGSWHDTTLGA 129 Query: 422883 IVATVAAEAGLRPVVGESVAGTAWDYLAQTAESNLHFLTRIAATLDATAKPAGGALVVQR 423062 IV +A+ L V S+AG ++ Q+ ES+ FLTR+A G L+ + Sbjct: 130 IVEAIASRNRLEASVAPSLAGIKIPHIDQSQESDAKFLTRLAERNGGEVSVKMGKLLFLK 189 Query: 423063 RGEGRTAAGDPLTPPVLPPWRLSDWSWSFEGRSVYRAAEAEWTET 423197 G+G TA+G + + ++ R Y A+W T Sbjct: 190 AGQGVTASGKKIPQITITRSDGDRHHFAIADRGAYTGVTAKWLHT 234 >ref|NP_542336.1|unknown Length = 337 Score = 121 bits (304), Expect = 9e-26 Identities = 102/305 (33%), Positives = 129/305 (42%), Gaps = 2/305 (0%) Frame = +2 Query: 919490 MAETSTIEWTDATWNPITGCTLASPGCQFCYAADLAATRLSQHPSRAGLARRNAAGVAAW 919669 MAET+ IEWTDAT N GCT SPGC CYA R ++ G RR A+ Sbjct: 1 MAETTNIEWTDATVNFWWGCTKVSPGCDNCYAEKWNDFRGNKQWG-PGAPRRKIISAASA 59 Query: 919670 TGEVRLNEQWLEQPLRWKRPRRIFVCAHADLFHEAVPDEWIDRVFAVMALAPQHTFQVLT 919849 ++ + E R RR+F+ + +D+ VPD+W FA A + Q +T Sbjct: 60 LRRLQKDADNFEHV--HGRRRRVFMHSMSDILDNEVPDDWRAEAFAAAESADRLDIQFVT 117 Query: 919850 KRAARMRGYVSKLDIYALEEADEWRDADHRVACDDDPNGSPAWHAQTAALEDALSAARTC 920029 KR + W D P + T E R Sbjct: 118 KRITNLEKLAPA----------HWLDGSW-------PRHVGVLQSVTTQREAERDIERLL 160 Query: 920030 -LEAGKPLPNVWLGVSAEDQQRADERIPDLLATSAAVRFGSF-EPLLGPMDVAWALGHPF 920203 +A LP W G+SAE + L VR + + L G +G F Sbjct: 161 KAKARHRLP--WTGISAEPL------LEGLRLRRLHVRGDIWLDALTG--HYLRKVGRTF 210 Query: 920204 GIAAGFLQRGHFSPGAEKLRGLDWIIVGGESGRHARPMHPAWARSLRDQAQAAGVPFLFK 920383 Q SPG L GLDW+I GGESG+ ARPMHP W R +R+ A GVPFLFK Sbjct: 211 ET---IYQANGNSPGP--LPGLDWVIAGGESGKLARPMHPEWVRGIREACSATGVPFLFK 265 Query: 920384 QWGEW 920398 QWGEW Sbjct: 266 QWGEW 270 >ref|NP_839876.1|gpD Length = 387 Score = 120 bits (302), Expect = 1e-25 Identities = 72/225 (32%), Positives = 112/225 (49%) Frame = +3 Query: 422523 GPDMIPAFRLTVDGEDATGAVADRLLSLVITDEDGTKADRLEIELDDRDGRLAFPDTEAR 422702 G + P + L +D D TG ++DRL+S+ +TD G +AD+L+IEL+D DG++ P A Sbjct: 10 GSTLTPDYMLMLDSRDITGNISDRLMSMTLTDNRGFEADQLDIELNDADGQVGLPVRGAV 69 Query: 422703 IEVALGFAGQPLAAMGVFAVDGVAGSGPRQSLRITATAADLKGEIRSPRTRAWRNRSLRD 422882 + V +G+ G L G F VD V G + I A +AD +G + S R +W + +L Sbjct: 70 LTVYIGWKGFALVCKGKFTVDEVEHRGAPDVVTIRARSADFRGTLNSRREGSWHDTTLGA 129 Query: 422883 IVATVAAEAGLRPVVGESVAGTAWDYLAQTAESNLHFLTRIAATLDATAKPAGGALVVQR 423062 IV +A+ L V S+AG ++ Q+ ES+ FLTR+A G L+ + Sbjct: 130 IVEAIASRNRLEASVAPSLAGIKIPHIDQSQESDAKFLTRLAERNGGEVSVKMGKLLFLK 189 Query: 423063 RGEGRTAAGDPLTPPVLPPWRLSDWSWSFEGRSVYRAAEAEWTET 423197 G+G TA+G + ++ R Y A+W T Sbjct: 190 AGQGVTASGKKNPQVTITRSDGDRHHFAIADRGAYTGVTAKWLHT 234 >ref|NP_536361.1|putative capsid assembly protein Length = 301 Score = 119 bits (299), Expect = 3e-25 Identities = 74/196 (37%), Positives = 103/196 (52%) Frame = -1 Query: 905387 RPLYLVEGGVAVIEVTGTLVHRGGWIGQSSGTTSYEGLMAQISAAVADPSVRGIALEIDS 905208 R + + G+ +I V+G LV R + TSYEGL + ++ AVADP+V I L+IDS Sbjct: 48 RRALVADTGMDIIPVSGILVSRSAHMNPCEPMTSYEGLRSAVNQAVADPAVEHIVLDIDS 107 Query: 905207 YGGEVAGLFDLADAIRAARAVKPVRXXXXXXXXXXXXXXXXXAERIVLPRTGAVGSIGVL 905028 GG G F+LAD IRAA VKP+ A ++++ RT VGSIGV+ Sbjct: 108 NGGSATGAFELADDIRAASLVKPITAIVNFSAFSGGYLIAAAASKVIVSRTSGVGSIGVI 167 Query: 905027 LVHADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASRALFAETVAA 904848 H D S+ +G+ VT + AG HK D P+E L + L + V+ S F + +A Sbjct: 168 ANHLDVSKRDEQQGIKVTSVFAGDHKNDLTPHEPLSDQSLTFLTSMVQNSYKQFVDAIAN 227 Query: 904847 GRGARLSRQQALATEA 904800 RG LS Q T+A Sbjct: 228 FRG--LSTQAVKDTQA 241 Score = 117 bits (293), Expect = 2e-24 Identities = 71/188 (37%), Positives = 98/188 (52%) Frame = +3 Query: 739656 GVAVIEVTGTLVHRGGWIGQSSGTTSYEGLMAQITAAVADPSVRGIALEIDSYGGEVAGL 739835 G+ +I V+G LV R + TSYEGL + + AVADP+V I L+IDS GG G Sbjct: 56 GMDIIPVSGILVSRSAHMNPCEPMTSYEGLRSAVNQAVADPAVEHIVLDIDSNGGSATGA 115 Query: 739836 FDLADTIRAARAVKPVRXXXXXXXXXXXXXXXXXXERIVLPRTGAVGSIGVLLVHADFSQ 740015 F+LAD IRAA VKP+ ++++ RT VGSIGV+ H D S+ Sbjct: 116 FELADDIRAASLVKPITAIVNFSAFSGGYLIAAAASKVIVSRTSGVGSIGVIANHLDVSK 175 Query: 740016 AMADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASRGLFAETVAAGRGARLTR 740195 +G+ VT + AG HK D P+E L + L + V+ S F + +A RG L+ Sbjct: 176 RDEQQGIKVTSVFAGDHKNDLTPHEPLSDQSLTFLTSMVQNSYKQFVDAIANFRG--LST 233 Query: 740196 QQALATEA 740219 Q T+A Sbjct: 234 QAVKDTQA 241 Score = 45.4 bits (106), Expect = 0.008 Identities = 30/111 (27%), Positives = 44/111 (39%) Frame = +2 Query: 760139 GLAVVPVRGILTPNMAQYERWFGWATYHGLAETMAHLAASEDAAAIVLEIDSPGGLVCGX 760318 G+ ++PV GIL A +Y GL + A IVL+IDS GG G Sbjct: 56 GMDIIPVSGILVSRSAHMNPCEPMTSYEGLRSAVNQAVADPAVEHIVLDIDSNGGSATGA 115 Query: 760319 XXXXXXXXXXXXVKPVHALVXXXXXXXXXXXXXXXXEIVMTPGAVAGSIGV 760471 VKP+ A+V +++++ + GSIGV Sbjct: 116 FELADDIRAASLVKPITAIVNFSAFSGGYLIAAAASKVIVSRTSGVGSIGV 166 >ref|YP_006585.1|putative head maturation protease Length = 306 Score = 119 bits (298), Expect = 4e-25 Identities = 93/307 (30%), Positives = 135/307 (43%), Gaps = 1/307 (0%) Frame = +3 Query: 739404 MNYPMIAGRVFGTPLLVDPVKGAAFLAGLGPRLVNXXXXXXXXXXXXPDRVAEAGRIAPR 739583 +N P +A VFG P V + A L PR+ P++ + + ++ P Sbjct: 6 INLPHLAEMVFGVPHYVSRQTMDSVKAVLIPRIQGTVENTGIQLALDPEKASASEQVQPA 65 Query: 739584 ASVLLDDAGDARREAGRPLYRVEGGVAVIEVTGTLVHRGGWIGQS-SGTTSYEGLMAQIT 739760 GGVAVI V G LV R G I Q+ + TSYE + +Q+T Sbjct: 66 -----------------------GGVAVIPVHGLLVARRGQITQACTELTSYERIRSQLT 102 Query: 739761 AAVADPSVRGIALEIDSYGGEVAGLFDLADTIRAARAVKPVRXXXXXXXXXXXXXXXXXX 739940 AA+ DPS+ I L+I+S GG G +LAD I +R KP+ Sbjct: 103 AALNDPSISEIVLDINSGGGAAVGCKELADYIYQSRETKPITAIVNYNAFSAAYFIASAC 162 Query: 739941 ERIVLPRTGAVGSIGVLLVHADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRADL 740120 +I++ +T VGSIGV++ H D S+ G+ T I G +K +G +E L E +A Sbjct: 163 SKIIVSQTSGVGSIGVIMEHLDTSKLEEKMGLTFTTIFRGDNKNNGTQHEPLSEEAQAMF 222 Query: 740121 QARVEASRGLFAETVAAGRGARLTRQQALATEAQXXXXXXXXXXXXXXEVSDLRSAFAAF 740300 Q ++ F +VA RG L RQ + T+A E+SD +SA A Sbjct: 223 QGMIDEMYETFTGSVAEYRG--LDRQVVVDTQAGLYFGPGAVSAGLADEISDPQSAINAI 280 Query: 740301 RAELSHP 740321 A+ P Sbjct: 281 AAKYKQP 287 Score = 111 bits (278), Expect = 9e-23 Identities = 88/292 (30%), Positives = 129/292 (44%), Gaps = 1/292 (0%) Frame = -1 Query: 905615 MNYPMIAGRVFGTPLLVDPVKGAAFLAGLGPRLVNXXXXXXXXXXXAPDRVAEAGRIAPR 905436 +N P +A VFG P V + A L PR+ P++ + + ++ P Sbjct: 6 INLPHLAEMVFGVPHYVSRQTMDSVKAVLIPRIQGTVENTGIQLALDPEKASASEQVQPA 65 Query: 905435 ASVLLDDAGDARREAGRPLYLVEGGVAVIEVTGTLVHRGGWIGQS-SGTTSYEGLMAQIS 905259 GGVAVI V G LV R G I Q+ + TSYE + +Q++ Sbjct: 66 -----------------------GGVAVIPVHGLLVARRGQITQACTELTSYERIRSQLT 102 Query: 905258 AAVADPSVRGIALEIDSYGGEVAGLFDLADAIRAARAVKPVRXXXXXXXXXXXXXXXXXA 905079 AA+ DPS+ I L+I+S GG G +LAD I +R KP+ Sbjct: 103 AALNDPSISEIVLDINSGGGAAVGCKELADYIYQSRETKPITAIVNYNAFSAAYFIASAC 162 Query: 905078 ERIVLPRTGAVGSIGVLLVHADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRADL 904899 +I++ +T VGSIGV++ H D S+ G+ T I G +K +G +E L E +A Sbjct: 163 SKIIVSQTSGVGSIGVIMEHLDTSKLEEKMGLTFTTIFRGDNKNNGTQHEPLSEEAQAMF 222 Query: 904898 QARVEASRALFAETVAAGRGARLSRQQALATEAQXXXXXXXXXXXXXDEVSD 904743 Q ++ F +VA RG L RQ + T+A DE+SD Sbjct: 223 QGMIDEMYETFTGSVAEYRG--LDRQVVVDTQAGLYFGPGAVSAGLADEISD 272 Score = 45.1 bits (105), Expect = 0.010 Identities = 52/216 (24%), Positives = 80/216 (37%), Gaps = 5/216 (2%) Frame = +2 Query: 760133 ARGLAVVPVRGILTPNMAQYERWFGWAT-YHGLAETMAHLAASEDAAAIVLEIDSPGGLV 760309 A G+AV+PV G+L Q + T Y + + + IVL+I+S GG Sbjct: 65 AGGVAVIPVHGLLVARRGQITQACTELTSYERIRSQLTAALNDPSISEIVLDINSGGGAA 124 Query: 760310 CGXXXXXXXXXXXXXVKPVHALVXXXXXXXXXXXXXXXXEIVMTPGAVAGSIGVAL---- 760477 G KP+ A+V +I+++ + GSIGV + Sbjct: 125 VGCKELADYIYQSRETKPITAIVNYNAFSAAYFIASACSKIIVSQTSGVGSIGVIMEHLD 184 Query: 760478 TAAAHVQPGANGAQIFEMSSRHARAKRPDASTEAGRAELQRSLDEXXXXXXXXXXXGRAI 760657 T+ + G IF +++ + S EA +A Q +DE R + Sbjct: 185 TSKLEEKMGLTFTTIFRGDNKNNGTQHEPLSEEA-QAMFQGMIDEMYETFTGSVAEYRGL 243 Query: 760658 PAAELAARLSVTDDPQDGGATFRAPEAIRRGLADRI 760765 V D Q G + P A+ GLAD I Sbjct: 244 DR-------QVVVDTQAG--LYFGPGAVSAGLADEI 270 >ref|NP_899539.1|PhoH domain protein Length = 235 Score = 118 bits (296), Expect = 7e-25 Identities = 78/215 (36%), Positives = 115/215 (53%), Gaps = 15/215 (6%) Frame = -3 Query: 692445 EIRTRKKPVEPRTEAQKAYVANLFDH-------ELAFGIGPAGTGKTYLAVAVGVTMLIG 692287 E RT ++ +E T Q+ Y A L + F IG AGTGKT+LA +G M Sbjct: 8 EERTLQR-IELLTFNQEQYAAALQEEVGEDGSGAFVFAIGSAGTGKTWLATTLGADMYSA 66 Query: 692286 GVVDRIILSRPAVEAGERLGFLPGDMKEKIDPYMQPLYDALNDFLPQKQLMKLMEEKRIE 692107 I+ +P + GE LG+LPG ++EK++P++Q + L D L + K KRI Sbjct: 67 FDYTEFIILKPTLSCGEELGYLPGTLEEKMEPWIQTVTQPLKDRLGADK-FKCDWNKRIH 125 Query: 692106 IAPLAFMRGRTLSNAFVVLDEAQNATTMQMKMFLTRLGEGSRMVVTGDRTQID------L 691945 P+ F+RG+T N F+V+DEAQN T +++ +TR+GE ++MV GD Q D Sbjct: 126 AEPIQFVRGKTFDNCFIVVDEAQNLTKTEIQTIMTRIGENTKMVFCGDLKQDDHKMIYRT 185 Query: 691944 PRGTASGLADAERVLKSVR--GVSFNYFTAKDVVR 691846 + SGLA +++ + G+ FT KDVVR Sbjct: 186 GQKEISGLAWMVNEIRNQQRSGIEIIEFTNKDVVR 220 >ref|NP_037691.1|IS903 transposase Length = 307 Score = 118 bits (295), Expect = 9e-25 Identities = 68/180 (37%), Positives = 101/180 (56%), Gaps = 4/180 (2%) Frame = -2 Query: 763495 GEGEWNARKHGGPKRRVWRRIHIGIDEKSLEIRAAQLTISDVGDAPMLPELLDQIPPDQD 763316 GEGEW +KHG +RR+WR++H+ +D K+ EI A L++++V D+ P L+ Q + Sbjct: 129 GEGEWKVKKHGQERRRIWRKLHLAVDSKTHEIICADLSLNNVTDSEAFPGLIRQ--THRK 186 Query: 763315 IATVPADGAFDTRKCHNAIASRGAAAVIPPRKNAKVCK---PDTTGAIARNEILRTSKRV 763145 I + ADGA+DTR CH+ + + +A+IPPRK A D A+A + ++ R Sbjct: 187 IRSAAADGAYDTRLCHDELRRKKISALIPPRKGAGYWPGEYADRNRAVANQRMTGSNAR- 245 Query: 763144 GRTIWRRWSGYPRRNRTATKMHCLK-LPGHRLSARDFDRQVAEFQVRVAVLNGFTALGTP 762968 W+ + Y RR+ T M+ +K L G L+ RD+D QVAE V LN T G P Sbjct: 246 ----WKWTTDYNRRSIAETAMYRVKQLFGGSLTLRDYDGQVAEAMALVRALNKMTKAGMP 301 >ref|NP_758935.1|ORF44 Length = 173 Score = 116 bits (291), Expect = 3e-24 Identities = 57/127 (44%), Positives = 81/127 (63%) Frame = +2 Query: 421931 ASLVMMALGSFRFGVNRAGYQSFSRSASWRWEAQDRLGRAPALQYLGPGSDEITLEGVIY 422110 A+ M+ALG +RF V+ A YQ+F+R S+ W Q R G A Q++G G + +L GVIY Sbjct: 37 AASYMLALGQYRFSVDTAAYQAFTRELSFLWPTQQRFGNMAAPQFVGRGEFKRSLNGVIY 96 Query: 422111 PHFRGGLRQVELMRLVAGTGQPMVLVDGLGWVWERWVIATVEERKSLFLTDGAPRKIEFT 422290 P ++GGLRQV+ M AG GQP+ LV G+G V W I ++ E ++F +G RK++F+ Sbjct: 97 PEYKGGLRQVDAMAAQAGLGQPLQLVSGIGEVLGFWCITSIRENATVFHRNGQARKLDFS 156 Query: 422291 LGLRAYG 422311 L L YG Sbjct: 157 LELLYYG 163 >ref|NP_918997.1|putative terminase large subunit (carboxy-end terminase) Length = 405 Score = 112 bits (281), Expect = 4e-23 Identities = 114/397 (28%), Positives = 165/397 (41%), Gaps = 10/397 (2%) Frame = -1 Query: 908567 MECPHCGTLIAHRHKVGLNRAALEGRGGWLHEGRHIEANGRRALVRIDDPDIRRTPIASY 908388 ME P CG I R L+ G WL +G + A+ +R + P RR+ IAS+ Sbjct: 1 MEAPCCGGRIEADQ-----RNDLDLWGVWLKDGESMTADDKR----VGTP--RRSRIASF 49 Query: 908387 SLNGAAAAFASWEELVQRYETERRRFEALGDDTDFARVHYTDIGVPYRRPEAEEEGALTA 908208 +NG AAF SW +LV Y T +E G + + TD+G PY E L Sbjct: 50 WMNGVVAAFISWRKLVANYITAEEDYERTGSQESLKKFYNTDLGEPYF--HRGNETVLLP 107 Query: 908207 AQIREHMRSQERRVAPAWTRFVTVSIDVQGNRF--EVLVMAWGAQGERMPIDRFAV--AQ 908040 ++ + P RF+ DVQ N + V +A G + +DRF V +Q Sbjct: 108 ETLKARAEVLREKHVPKAVRFLIGICDVQKNMWVCNVFGIAPGNPYDIYVVDRFNVIKSQ 167 Query: 908039 PPDHAPRAKGDDERYRALDPGRYVED-ADALLDLPERLYPVEGASWSLKPCALVI-DFNG 907866 DH GD E + P Y+ED + + E++YP++ S + + D G Sbjct: 168 RVDH----DGDREWVK---PHAYLEDWQEVRTQVMEKMYPLDDDSGRVMQLKMTFCDSGG 220 Query: 907865 PAGWSDNAEKFWRARRRNGQGGLWWLSIGR-GGFQQRDRVWHEAPERGSKGRRARG-IKL 907692 G + A F+R R G G + L G R RV + K ARG + + Sbjct: 221 REGVTGMAYNFYRQLREEGLHGRFHLIKGEPKPGHPRTRVGYPDANHKDKWSAARGDVPV 280 Query: 907691 LNMATDRMKESVLAAVGRFEGGQGAQHVPSWXXXXXXXXXXXERRGAKGYEKRQGAVRNE 907512 L + ++ +K++ L + G G H P W ERR KG+ RNE Sbjct: 281 LFLNSNLLKDTALGRLEVVTPGSGMVHFPEWLPDSYYVQLVSERRTDKGW-VATSVKRNE 339 Query: 907511 TLDLSVQALAVAEFKGL--NRIDWQAPPAWAEAGPAN 907407 + DL L L + DW +PP+WAE N Sbjct: 340 SWDLLYYCLGANASVLLLTEKFDWSSPPSWAEEWDKN 376 >ref|YP_006926.1|putative PhoH-like protein Length = 250 Score = 111 bits (277), Expect = 1e-22 Identities = 61/196 (31%), Positives = 106/196 (54%), Gaps = 2/196 (1%) Frame = -3 Query: 692427 KPVEPRTEAQKAYVANLFDHELAFGIGPAGTGKTYLAVAVGVTMLIG--GVVDRIILSRP 692254 K + + QK+Y+ + ++ + GIG GTGKT++ + L+ ++++IL RP Sbjct: 40 KSLVGKNREQKSYINMIKNNTVTVGIGEPGTGKTFIPSVLAAQELVDIHSDIEQVILVRP 99 Query: 692253 AVEAGERLGFLPGDMKEKIDPYMQPLYDALNDFLPQKQLMKLMEEKRIEIAPLAFMRGRT 692074 G+ LG LPGD+ EK++P+++P+ D + + +E ++I+ + RGRT Sbjct: 100 NEPLGKSLGMLPGDLAEKLEPWLEPIADGMKWAIGDHAYKGYVERQKIKFLAIEHARGRT 159 Query: 692073 LSNAFVVLDEAQNATTMQMKMFLTRLGEGSRMVVTGDRTQIDLPRGTASGLADAERVLKS 691894 +N++V++DEAQN + M LTR+G+ R+++ GD Q D+ SGLA V + Sbjct: 160 FNNSYVIVDEAQNISVEAMVCLLTRVGQDCRLIICGDIAQKDIKGD--SGLALLMEVYEK 217 Query: 691893 VRGVSFNYFTAKDVVR 691846 F+ D VR Sbjct: 218 YENAPFSMIELIDNVR 233 >ref|NP_944891.1|unknown Length = 368 Score = 109 bits (273), Expect = 3e-22 Identities = 91/352 (25%), Positives = 151/352 (42%), Gaps = 28/352 (7%) Frame = -1 Query: 903626 YSLAEMTQAINILPNLYTRLGQMGLFQFEGVTQRSVIIEQAEGVLSLLPSQPWGG-PATV 903450 + LA++T + +PN Y + +GLF+ +TQ + +++ + +SLL + A Sbjct: 10 FFLADLTGEVQSIPNTYGYISNLGLFRSAPITQTTFLMDLTDWDVSLLDAVDRDSRKAET 69 Query: 903449 GGRERRSMRSFALPHIPHDDVITAADVQGQPALGSTGQADPLAEVMTRKLALMRRKHAAT 903270 ER SF + + + IT ++QG G+ + A V +KL +R K T Sbjct: 70 SAPERVRQISFPMMYFKEVESITPDEIQGVRQPGTANELTTEAVVRAKKLMKIRTKFDIT 129 Query: 903269 REYMEMNALRGVVKDGAGLTLYDYFAEFGLARISVDFLLGTAGTNVQAKCREVLRAVEEE 903090 RE++ M AL+G V D G D + +F + + ++ F L ++ A E+ +E+E Sbjct: 130 REFLFMQALKGKVVDARGTLYADLYKQFDVEKKTIYFDLDNPNADIDASIEELRMHMEDE 189 Query: 903089 LK-GESMTG--VTALVSPEFFDKLIGHPKVEEAYKYYAS------------SGAQPLRQD 902955 K G + G + +V FF KL HPK+ +AY + +G Q Sbjct: 190 AKTGTVINGEEIHVVVDRVFFSKLTKHPKIRDAYLAQQTPLAWQQITGSLRTGGADGVQA 249 Query: 902954 VRRSFPFAGLLFEEYVGSVTLAGGASERLVPAQE-------GTAFPLGTM-----DTFRT 902811 +F + G+ F +Y G G LV G AFP M + F Sbjct: 250 HMNTFYYGGVKFVQYNGKFKDKRGKVHTLVSIDSVADTVGVGHAFPNVAMLGEANNIFEV 309 Query: 902810 YGAPADLLEAVNTIGQPIYARQLLDPKGRWIDLMTEANILPVNKRPRLAVRI 902655 P + NT+GQ +Y + + ID + +LP RP+L V + Sbjct: 310 AYGPCPKMGYANTLGQELYVFEYEKDRDEGIDFEAHSYMLPYCTRPQLLVDV 361 >ref|NP_944889.1|unknown Length = 418 Score = 109 bits (272), Expect = 4e-22 Identities = 73/205 (35%), Positives = 103/205 (50%), Gaps = 2/205 (0%) Frame = -1 Query: 905408 DARREAGRPLYLVEGGVAVIEVTGTLVHRGGWIGQ--SSGTTSYEGLMAQISAAVADPSV 905235 D + R L V+ +A+I + G L HR +I + G +SYEGL A+AD S+ Sbjct: 16 DKPKGEARSLLKVKDDIAIIPIMGGLTHRMTFIDAMCTGGLSSYEGLRRGFDEALADESI 75 Query: 905234 RGIALEIDSYGGEVAGLFDLADAIRAARAVKPVRXXXXXXXXXXXXXXXXXAERIVLPRT 905055 + I L IDS GGE +G F+LA I A+R K + AE I+ Sbjct: 76 KTIVLHIDSGGGEASGCFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEIIASPD 135 Query: 905054 GAVGSIGVLLVHADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASR 904875 VGSIGV++VH + ++A GV + +I AG K G+P++AL E + LQ R+ + Sbjct: 136 ADVGSIGVIMVHQELTKAFEKNGVTINVIKAGEFKGMGSPFQALSEESKERLQKRINDTY 195 Query: 904874 ALFAETVAAGRGARLSRQQALATEA 904800 A F VA R LS + TEA Sbjct: 196 ATFTGFVAESR--NLSEEAVKNTEA 218 Score = 107 bits (268), Expect = 1e-21 Identities = 70/205 (34%), Positives = 102/205 (49%), Gaps = 2/205 (0%) Frame = +3 Query: 739611 DARREAGRPLYRVEGGVAVIEVTGTLVHRGGWIGQ--SSGTTSYEGLMAQITAAVADPSV 739784 D + R L +V+ +A+I + G L HR +I + G +SYEGL A+AD S+ Sbjct: 16 DKPKGEARSLLKVKDDIAIIPIMGGLTHRMTFIDAMCTGGLSSYEGLRRGFDEALADESI 75 Query: 739785 RGIALEIDSYGGEVAGLFDLADTIRAARAVKPVRXXXXXXXXXXXXXXXXXXERIVLPRT 739964 + I L IDS GGE +G F+LA I A+R K + E I+ Sbjct: 76 KTIVLHIDSGGGEASGCFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEIIASPD 135 Query: 739965 GAVGSIGVLLVHADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASR 740144 VGSIGV++VH + ++A GV + +I AG K G+P++AL E + LQ R+ + Sbjct: 136 ADVGSIGVIMVHQELTKAFEKNGVTINVIKAGEFKGMGSPFQALSEESKERLQKRINDTY 195 Query: 740145 GLFAETVAAGRGARLTRQQALATEA 740219 F VA R L+ + TEA Sbjct: 196 ATFTGFVAESR--NLSEEAVKNTEA 218 Score = 43.5 bits (101), Expect = 0.029 Identities = 33/114 (28%), Positives = 44/114 (38%), Gaps = 2/114 (1%) Frame = +2 Query: 760142 LAVVPVRGILTPNMAQYERWF--GWATYHGLAETMAHLAASEDAAAIVLEIDSPGGLVCG 760315 +A++P+ G LT M + G ++Y GL A E IVL IDS GG G Sbjct: 32 IAIIPIMGGLTHRMTFIDAMCTGGLSSYEGLRRGFDEALADESIKTIVLHIDSGGGEASG 91 Query: 760316 XXXXXXXXXXXXXVKPVHALVXXXXXXXXXXXXXXXXEIVMTPGAVAGSIGVAL 760477 K + A V EI+ +P A GSIGV + Sbjct: 92 CFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEIIASPDADVGSIGVIM 145 >ref|NP_944888.1|unknown Length = 448 Score = 109 bits (272), Expect = 4e-22 Identities = 73/205 (35%), Positives = 103/205 (50%), Gaps = 2/205 (0%) Frame = -1 Query: 905408 DARREAGRPLYLVEGGVAVIEVTGTLVHRGGWIGQ--SSGTTSYEGLMAQISAAVADPSV 905235 D + R L V+ +A+I + G L HR +I + G +SYEGL A+AD S+ Sbjct: 46 DKPKGEARSLLKVKDDIAIIPIMGGLTHRMTFIDAMCTGGLSSYEGLRRGFDEALADESI 105 Query: 905234 RGIALEIDSYGGEVAGLFDLADAIRAARAVKPVRXXXXXXXXXXXXXXXXXAERIVLPRT 905055 + I L IDS GGE +G F+LA I A+R K + AE I+ Sbjct: 106 KTIVLHIDSGGGEASGCFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEIIASPD 165 Query: 905054 GAVGSIGVLLVHADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASR 904875 VGSIGV++VH + ++A GV + +I AG K G+P++AL E + LQ R+ + Sbjct: 166 ADVGSIGVIMVHQELTKAFEKNGVTINVIKAGEFKGMGSPFQALSEESKERLQKRINDTY 225 Query: 904874 ALFAETVAAGRGARLSRQQALATEA 904800 A F VA R LS + TEA Sbjct: 226 ATFTGFVAESR--NLSEEAVKNTEA 248 Score = 107 bits (268), Expect = 1e-21 Identities = 70/205 (34%), Positives = 102/205 (49%), Gaps = 2/205 (0%) Frame = +3 Query: 739611 DARREAGRPLYRVEGGVAVIEVTGTLVHRGGWIGQ--SSGTTSYEGLMAQITAAVADPSV 739784 D + R L +V+ +A+I + G L HR +I + G +SYEGL A+AD S+ Sbjct: 46 DKPKGEARSLLKVKDDIAIIPIMGGLTHRMTFIDAMCTGGLSSYEGLRRGFDEALADESI 105 Query: 739785 RGIALEIDSYGGEVAGLFDLADTIRAARAVKPVRXXXXXXXXXXXXXXXXXXERIVLPRT 739964 + I L IDS GGE +G F+LA I A+R K + E I+ Sbjct: 106 KTIVLHIDSGGGEASGCFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEIIASPD 165 Query: 739965 GAVGSIGVLLVHADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASR 740144 VGSIGV++VH + ++A GV + +I AG K G+P++AL E + LQ R+ + Sbjct: 166 ADVGSIGVIMVHQELTKAFEKNGVTINVIKAGEFKGMGSPFQALSEESKERLQKRINDTY 225 Query: 740145 GLFAETVAAGRGARLTRQQALATEA 740219 F VA R L+ + TEA Sbjct: 226 ATFTGFVAESR--NLSEEAVKNTEA 248 Score = 43.5 bits (101), Expect = 0.029 Identities = 33/114 (28%), Positives = 44/114 (38%), Gaps = 2/114 (1%) Frame = +2 Query: 760142 LAVVPVRGILTPNMAQYERWF--GWATYHGLAETMAHLAASEDAAAIVLEIDSPGGLVCG 760315 +A++P+ G LT M + G ++Y GL A E IVL IDS GG G Sbjct: 62 IAIIPIMGGLTHRMTFIDAMCTGGLSSYEGLRRGFDEALADESIKTIVLHIDSGGGEASG 121 Query: 760316 XXXXXXXXXXXXXVKPVHALVXXXXXXXXXXXXXXXXEIVMTPGAVAGSIGVAL 760477 K + A V EI+ +P A GSIGV + Sbjct: 122 CFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEIIASPDADVGSIGVIM 175 >ref|NP_892049.1|capsid protein Length = 303 Score = 108 bits (269), Expect = 1e-21 Identities = 93/305 (30%), Positives = 136/305 (44%), Gaps = 1/305 (0%) Frame = +3 Query: 739404 MNYPMIAGRVFGTPLLVDPVKGAAFLAGLGPRLVNXXXXXXXXXXXXPDRVAEAGRIAPR 739583 +NYP +A +VFG P + A L PRL+ G ++ Sbjct: 5 INYPHLANQVFGIPQYASRQIMDSIKAVLVPRLM--------------------GEMSGT 44 Query: 739584 ASVLLDDAGDARREAGRPLYRVEGGVAVIEVTGTLVHRGGWIGQS-SGTTSYEGLMAQIT 739760 A + + E + G +AVI V G LV R G I Q+ + TSYE + AQ T Sbjct: 45 ALMAFEPDDQPESEPTQT-----GSIAVIPVHGILVPRRGQITQACTELTSYERIRAQFT 99 Query: 739761 AAVADPSVRGIALEIDSYGGEVAGLFDLADTIRAARAVKPVRXXXXXXXXXXXXXXXXXX 739940 A+ DPSV I L+ + GG V+G +LAD I A+R+VKP Sbjct: 100 KALNDPSVSEIVLDFYTGGGAVSGCKELADYIFASRSVKPSTAIVNYNAFSAGYFMASAC 159 Query: 739941 ERIVLPRTGAVGSIGVLLVHADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRADL 740120 RIV+ T VGSIGV+L H + S+ G+ T + G K G+P+E L + A L Sbjct: 160 SRIVVSHTSGVGSIGVILEHMEASKLEEQIGLKFTTFYRGDFKNAGSPHEPLTDEATAYL 219 Query: 740121 QARVEASRGLFAETVAAGRGARLTRQQALATEAQXXXXXXXXXXXXXXEVSDLRSAFAAF 740300 Q ++ + F +VA RG + Q+ + T+A+ E+SD ++A Sbjct: 220 QQLIDDAYETFTTSVAEYRG--IDVQRVIDTQARTFFGQAAVDAGLADELSDPQTAINNI 277 Query: 740301 RAELS 740315 A+ S Sbjct: 278 AAKYS 282 Score = 105 bits (261), Expect = 8e-21 Identities = 90/292 (30%), Positives = 131/292 (44%), Gaps = 1/292 (0%) Frame = -1 Query: 905615 MNYPMIAGRVFGTPLLVDPVKGAAFLAGLGPRLVNXXXXXXXXXXXAPDRVAEAGRIAPR 905436 +NYP +A +VFG P + A L PRL+ G ++ Sbjct: 5 INYPHLANQVFGIPQYASRQIMDSIKAVLVPRLM--------------------GEMSGT 44 Query: 905435 ASVLLDDAGDARREAGRPLYLVEGGVAVIEVTGTLVHRGGWIGQS-SGTTSYEGLMAQIS 905259 A + + E + G +AVI V G LV R G I Q+ + TSYE + AQ + Sbjct: 45 ALMAFEPDDQPESEPTQT-----GSIAVIPVHGILVPRRGQITQACTELTSYERIRAQFT 99 Query: 905258 AAVADPSVRGIALEIDSYGGEVAGLFDLADAIRAARAVKPVRXXXXXXXXXXXXXXXXXA 905079 A+ DPSV I L+ + GG V+G +LAD I A+R+VKP Sbjct: 100 KALNDPSVSEIVLDFYTGGGAVSGCKELADYIFASRSVKPSTAIVNYNAFSAGYFMASAC 159 Query: 905078 ERIVLPRTGAVGSIGVLLVHADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRADL 904899 RIV+ T VGSIGV+L H + S+ G+ T + G K G+P+E L + A L Sbjct: 160 SRIVVSHTSGVGSIGVILEHMEASKLEEQIGLKFTTFYRGDFKNAGSPHEPLTDEATAYL 219 Query: 904898 QARVEASRALFAETVAAGRGARLSRQQALATEAQXXXXXXXXXXXXXDEVSD 904743 Q ++ + F +VA RG + Q+ + T+A+ DE+SD Sbjct: 220 QQLIDDAYETFTTSVAEYRG--IDVQRVIDTQARTFFGQAAVDAGLADELSD 269 >ref|NP_665987.1|unknown Length = 290 Score = 107 bits (266), Expect = 2e-21 Identities = 89/302 (29%), Positives = 120/302 (39%), Gaps = 3/302 (0%) Frame = +2 Query: 919490 MAETSTIEWTDATWNPITGCTLASPGCQFCYAADLAATRLSQHPSRAGLARRNAAGVAAW 919669 M + I W +++WNP GC S GCQ C A + R ++ + Sbjct: 1 MPGETPISWCESSWNPHHGCFKVSEGCQNCNAERTSFHRYGHTDDEWTVSNAES------ 54 Query: 919670 TGEVRLNEQWLEQPLRWKRPRRIFVCAHADLFHEA--VPDEWIDRVFAVMALAPQHTFQV 919843 + L E LE P P+RIFV + +DLF VPDE + R+F + P+H F Sbjct: 55 --NITLQEHHLEWPSTLDEPQRIFVNSMSDLFLPPTFVPDEHLHRIFDQIEANPEHVFIA 112 Query: 919844 LTKRAARMRGYVSKLDIYALEEADEWRDADHRVACDDDPNGSPAWHAQTAALEDALSAAR 920023 LTK G DE R W Sbjct: 113 LTKHGTETGG----------RHPDEARILQ--------------WDR------------- 135 Query: 920024 TCLEAGKPLPNVWLGVSAEDQQRADERIPDLLATSAAVRFGSFEPLLGPMDVAWALGHPF 920203 E G+ N+W+GVS RA R L T A+ ++ SFEPL+GP++ Sbjct: 136 ---EYGRWPDNLWMGVSIGTNGRA-YRAECLRRTGASTKWISFEPLVGPIE--------- 182 Query: 920204 GIAAGFLQRGHFSPGAEKLRGLDWIIVGGESG-RHARPMHPAWARSLRDQAQAAGVPFLF 920380 A L G+DW + GGESG R M +WAR +RD A+ G+PF F Sbjct: 183 -------------DPAGTLAGIDWALAGGESGGEERREMDHSWARDIRDAAEEFGIPFYF 229 Query: 920381 KQ 920386 KQ Sbjct: 230 KQ 231 >ref|NP_490626.1|hypothetical protein Length = 146 Score = 106 bits (265), Expect = 3e-21 Identities = 50/127 (39%), Positives = 74/127 (58%) Frame = +2 Query: 421940 VMMALGSFRFGVNRAGYQSFSRSASWRWEAQDRLGRAPALQYLGPGSDEITLEGVIYPHF 422119 +M++LG F F ++ YQ F R WR + R+G PA Q++G G D ITL GV+ P Sbjct: 1 MMLSLGMFVFSLHTLAYQEFQRQTEWRHASSSRIGAQPARQFVGRGDDAITLPGVLLPEL 60 Query: 422120 RGGLRQVELMRLVAGTGQPMVLVDGLGWVWERWVIATVEERKSLFLTDGAPRKIEFTLGL 422299 G ++++R +A TG +V+G G ++ WVI V E ++LF DG PR+IEF+L L Sbjct: 61 AGSALSLDVLRQMADTGSAWPMVEGTGRIYGLWVIERVTETRTLFFADGTPRRIEFSLEL 120 Query: 422300 RAYGSDR 422320 + R Sbjct: 121 KRIDDGR 127 >ref|YP_164275.1|DNA adenine methyltransferase Length = 284 Score = 104 bits (259), Expect = 1e-20 Identities = 88/276 (31%), Positives = 121/276 (43%), Gaps = 19/276 (6%) Frame = +1 Query: 744394 VPPAAPVAPWLGGKKRLHPLILERIEAIPHRAYVEPFVGMGGIFLRRRFRPRLEVMNDRN 744573 +PP P+ + GGK L P I++ + PH Y+EPF G + LR+ R EV ND + Sbjct: 1 MPPQRPILRYHGGKWLLAPWIIQHLA--PHHTYIEPFGGAASVLLRKA-RSYAEVYNDLD 57 Query: 744574 GEIINLFRILQRHYPQLLEIMRFQICSRREFDR--LRLTDPATLTDLERAARFLYLQRLS 744747 G+++NLFR+ + +L + + +R EF+ TDP LERA R + Sbjct: 58 GDVVNLFRVARDRGEELRQALALTPFAREEFEASYAETTDP-----LERARRMVVRSFQG 112 Query: 744748 FG-----GKLDGVFGVSA--GHGPRFSLARLEPVLDAAHERLDGVVFESLDWADLIPRYD 744906 FG G+ G SA G P L + ERL GVV E+ D L+ +D Sbjct: 113 FGSAAASGERTGFRSTSARSGTAPALDWRNYPDALASITERLQGVVIENRDALVLMEHHD 172 Query: 744907 TTETLFYLDPPYFGG-------ENDYGKGL---FDRAQFARIAEILGGLKGAFLLSINDT 745056 TL Y+DPPY N GK D Q +A L GL G +LS Sbjct: 173 RPSTLHYVDPPYVHSTRSTKVRHNATGKSYRHELDDNQHRDLAAFLKGLTGMVVLSGYPC 232 Query: 745057 PEIRALFGRFHLEPVRLSYSVSASGGTEAQELLVSN 745164 P L+ +H RL + A G + E L N Sbjct: 233 PLYDRLYRHWH----RLERNALADGARDRIECLWLN 264 Score = 97.1 bits (240), Expect = 2e-18 Identities = 85/276 (30%), Positives = 118/276 (42%), Gaps = 19/276 (6%) Frame = -1 Query: 890024 VPPAAPVAPWLGGKKRLHPLILERIEAIPHRAYVEPFVGMGGIFLRRRFRPRLEVMNDRN 889845 +PP P+ + GGK L P I++ + PH Y+EPF G + LR+ R EV ND + Sbjct: 1 MPPQRPILRYHGGKWLLAPWIIQHLA--PHHTYIEPFGGAASVLLRKA-RSYAEVYNDLD 57 Query: 889844 GEIINLFRILQRHYPQLLEIMRFQICSRREFDR--LRLTDPATLTDLERAARFLYLQRLS 889671 G+++NLFR+ + +L + + +R EF+ TDP LERA R + Sbjct: 58 GDVVNLFRVARDRGEELRQALALTPFAREEFEASYAETTDP-----LERARRMVVRSFQG 112 Query: 889670 FG-----GKPNG--SFGISPGNGPLFSLARLEPLLDAARTRLDGVVFECLDWADLIPRYD 889512 FG G+ G S G P L + RL GVV E D L+ +D Sbjct: 113 FGSAAASGERTGFRSTSARSGTAPALDWRNYPDALASITERLQGVVIENRDALVLMEHHD 172 Query: 889511 TAETLFYLDPPYFGG-------ENDYGKGL---FDRAQFARIAEILGSLKGAFLLSINDT 889362 TL Y+DPPY N GK D Q +A L L G +LS Sbjct: 173 RPSTLHYVDPPYVHSTRSTKVRHNATGKSYRHELDDNQHRDLAAFLKGLTGMVVLSGYPC 232 Query: 889361 PEIRALFGRFHLEPVRLNYSVSAAGSTEAQELLVSN 889254 P L+ +H RL + A G+ + E L N Sbjct: 233 PLYDRLYRHWH----RLERNALADGARDRIECLWLN 264 Score = 85.5 bits (210), Expect = 7e-15 Identities = 66/188 (35%), Positives = 88/188 (46%), Gaps = 6/188 (3%) Frame = +2 Query: 423677 PLQPVAPWIGGKRNLARRICAILDRSPCLTYAEPFVGMAGIFLRRSSRPRAEVINDRGRD 423856 P +P+ + GGK LA I L +P TY EPF G A + LR++ R AEV ND D Sbjct: 3 PQRPILRYHGGKWLLAPWIIQHL--APHHTYIEPFGGAASVLLRKA-RSYAEVYNDLDGD 59 Query: 423857 VANLFRILQRHYPQFLDTLRFQLTTRAEFERLGATDPDTLTDLERAARFLYLQRTAFGGK 424036 V NLFR+ + + L R EFE A+ +T LERA R + FG Sbjct: 60 VVNLFRVARDRGEELRQALALTPFAREEFE---ASYAETTDPLERARRMVVRSFQGFGSA 116 Query: 424037 VSG---RNFGVSSHRPGR---FNLTTLEPMLEDLHSRLAGVIVECLDWADFLARYDRPET 424198 + F +S R G + L + RL GV++E D + +DRP T Sbjct: 117 AASGERTGFRSTSARSGTAPALDWRNYPDALASITERLQGVVIENRDALVLMEHHDRPST 176 Query: 424199 LFYLDPPY 424222 L Y+DPPY Sbjct: 177 LHYVDPPY 184 >ref|NP_046783.1|gpU Length = 159 Score = 103 bits (257), Expect = 2e-20 Identities = 50/120 (41%), Positives = 73/120 (60%) Frame = +2 Query: 421940 VMMALGSFRFGVNRAGYQSFSRSASWRWEAQDRLGRAPALQYLGPGSDEITLEGVIYPHF 422119 +M+ALG F F +Q+ R + +RW + R+G+ A Q+LG G + ITL GV+YP Sbjct: 1 MMLALGMFVFMRQTLPHQTMQRESDYRWPSNSRIGKRDAFQFLGVGEENITLAGVLYPEL 60 Query: 422120 RGGLRQVELMRLVAGTGQPMVLVDGLGWVWERWVIATVEERKSLFLTDGAPRKIEFTLGL 422299 GG + +RL+A G+ L+DG G ++ +VI+ V E S+F DG PRKI+FTL L Sbjct: 61 TGGKLTMTTLRLMAEEGRAWPLLDGTGMIYGMYVISRVSETGSIFFADGTPRKIDFTLSL 120 >ref|NP_839875.1|gpU Length = 159 Score = 103 bits (257), Expect = 2e-20 Identities = 50/120 (41%), Positives = 73/120 (60%) Frame = +2 Query: 421940 VMMALGSFRFGVNRAGYQSFSRSASWRWEAQDRLGRAPALQYLGPGSDEITLEGVIYPHF 422119 +M+ALG F F +Q+ R + +RW + R+G+ A Q+LG G + ITL GV+YP Sbjct: 1 MMLALGMFVFMRQTLPHQTMQRESDYRWPSNSRIGKRDAFQFLGVGEENITLAGVLYPEL 60 Query: 422120 RGGLRQVELMRLVAGTGQPMVLVDGLGWVWERWVIATVEERKSLFLTDGAPRKIEFTLGL 422299 GG + +RL+A G+ L+DG G ++ +VI+ V E S+F DG PRKI+FTL L Sbjct: 61 TGGKLTMTTLRLMAEEGRAWPLLDGTGMIYGMYVISRVSETGSIFFADGTPRKIDFTLSL 120 >ref|NP_878225.1|gpU Length = 159 Score = 102 bits (254), Expect = 5e-20 Identities = 49/120 (40%), Positives = 73/120 (60%) Frame = +2 Query: 421940 VMMALGSFRFGVNRAGYQSFSRSASWRWEAQDRLGRAPALQYLGPGSDEITLEGVIYPHF 422119 +M+ALG F F +Q+ R + +RW + R+G+ A Q+LG G + +TL GV+YP Sbjct: 1 MMLALGMFVFMRQTLPHQTMQRESDYRWPSNSRIGKRDAFQFLGVGEENMTLAGVLYPEL 60 Query: 422120 RGGLRQVELMRLVAGTGQPMVLVDGLGWVWERWVIATVEERKSLFLTDGAPRKIEFTLGL 422299 GG + +RL+A G+ L+DG G ++ +VI+ V E S+F DG PRKI+FTL L Sbjct: 61 TGGKLTMTTLRLMAEEGRAWPLLDGTGMIYGMYVISRVSETGSIFFADGTPRKIDFTLSL 120 >ref|YP_006586.1|major capsid head protein precursor Length = 428 Score = 102 bits (253), Expect = 7e-20 Identities = 71/264 (26%), Positives = 114/264 (43%), Gaps = 4/264 (1%) Frame = +2 Query: 761783 HRGVAAGFMVQALARTKGDRDKAARLLEAEXXXXXXXXXXXXXXXXXXVTIPRPQAAELI 761962 + G MV ++A +G+ AA+ E V IP+ +E+I Sbjct: 88 YTGAGMTRMVMSIAAAQGNLQDAAKFASDELNDQSVSMAISTAAGSGGVLIPQNIHSEVI 147 Query: 761963 EMLXXXXXXXXXXXXTLPMPAGEMRHAKQVGSXXXXXXXXXXXXXPSQPSFDKIDQSFKK 762142 E+L ++P+P G M + G S+ FD + + K Sbjct: 148 ELLRDRTIVRKLGARSIPLPNGNMSLPRLAGGATASYTGENQDAKVSEARFDDVKLTAKT 207 Query: 762143 LLGMVPIGNSLLRHSGVAMAQLVRDDLLKVMALREDLAFLRGDGSADTPKGLR----HWM 762310 ++ MVPI N+L+ +G + QLV D+L +++RED AF+R DG+ DTP G++ W Sbjct: 208 MIAMVPISNALIGRAGFNVEQLVLQDILTAISVREDKAFMRDDGTGDTPIGMKARATQWN 267 Query: 762311 LXXXXXXXXXXXXXXXXXXXIRRTVSLVEDADVGMVSPGWIMRASTKNWLASLKDPNGNP 762490 + + + D + M+S GW M T L L+D NGN Sbjct: 268 -RLLPWAADAAVNLDTIDTYLDSIILMSMDGNSNMISSGWGMSNRTYMKLFGLRDGNGNK 326 Query: 762491 LFPSIGASAQLMGFPIRTSSQRPA 762562 ++P + A L G+PI+ +S PA Sbjct: 327 VYPEM-AQGMLKGYPIQRTSAIPA 349 >ref|NP_046899.1|gp4 Length = 530 Score = 100 bits (250), Expect = 2e-19 Identities = 119/511 (23%), Positives = 200/511 (39%), Gaps = 55/511 (10%) Frame = -2 Query: 907108 PVMAGP----FLRRLGAWVGGFDAGLANRRLRGFRPARAHVNXXXXXAGPDMNARARYLV 906941 P + GP LR + GG G +LRG+ P + NARA LV Sbjct: 4 PSLVGPDGKTSLREYAGYHGG--GGGFGGQLRGWNPPSESADAALLPNYSRGNARADDLV 61 Query: 906940 RNNGYAQGALDSWAANTVGT----GVKPSSLIA------APARKAALQRLWQDWTDE--- 906800 RNNGYA A+ + VG+ +PS + A ++ W ++ ++ Sbjct: 62 RNNGYAANAVQLHQDHIVGSFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFC 121 Query: 906799 -ADAEGVTDFYGLQRRIAREFFLTGECFVRLRARRPGDGLTVPLQLQCLPSEMLPIGRTE 906623 DAE F + R GE V+ A D + + Q + Sbjct: 122 GIDAERKRTFTMMIREGVAMHAFNGELCVQ--ATWDSDSTRL-FRTQFKMVSPKRVSNPN 178 Query: 906622 VLGGGRAIRQGIEFDAVGRRVAYHFHRRHPGDPTEPG-LAGETVRVPAE------DVLHI 906464 +G R R G++ + G + Y+ D PG +A +P E +H+ Sbjct: 179 NIGDTRNCRAGVKINDSGAALGYYV-----SDDGYPGWMAQNWTYIPRELPGGRPSFIHV 233 Query: 906463 VDPVESGQLRGVSRFAPAIVKLFLLDQYDDAELDRKKVAAMYAMFITS------------ 906320 +P+E GQ RG + F + ++ +LD + +L V AMYA I S Sbjct: 234 FEPMEDGQTRGANAFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFIL 293 Query: 906319 ---NDPDAAPLEGELGDQVA----------PGQIVRLDPGEDMKVADPADSGATYEPFQY 906179 N + L G LG+ A ++ L PG+ + + D+ Y F+ Sbjct: 294 GADNKEQQSKLTGWLGEMAAYYSAAPVRLGGARVPHLLPGDSLNLQSAQDTDNGYSTFEQ 353 Query: 906178 RTLLQVSAALGIPYAHLSQDMVKANYSNARTALMEFRRRVEAFQHSVLVYQLCRPVWARF 905999 L ++A LG+ Y LS++ + +YS AR + E + V Q C+ ++ + Sbjct: 354 SLLRYIAAGLGVSYEQLSRNYSQMSYSTARASANESWAYFMGRRKFVASRQACQ-MFLCW 412 Query: 905998 TDLAVLTGAVGLP-----GYERRRRDYLACEWLPPKWQWVDPLKDIRAEIEEIGAGLKSR 905834 + A++ V LP ++ R + W+ +D LK+++ + I AGL + Sbjct: 413 LEEAIVRRVVTLPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLSTY 472 Query: 905833 SQAIGERGYDAEEVDRQIAADRKREGRLGLD 905741 + +RG D +E+ Q + GL+ Sbjct: 473 EKECAKRGDDYQEIFAQQVRESMERRAAGLN 503 Score = 68.9 bits (167), Expect = 7e-10 Identities = 61/264 (23%), Positives = 109/264 (41%), Gaps = 30/264 (11%) Frame = +1 Query: 738577 QLRGVSRFAPAIVKLFLLDQYDDAELDRKKVAAMYAMFITS---------------NDPD 738711 Q RG + F + ++ +LD + +L V AMYA I S N Sbjct: 241 QTRGANAFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGADNKEQ 300 Query: 738712 AAPLEGELGDQVA----------PGQIVRLDPGEDMKVADPADSGATYEPFQYRTLLQVS 738861 + L G LG+ A ++ L PG+ + + D+ Y F+ L ++ Sbjct: 301 QSKLTGWLGEMAAYYSAAPVRLGGARVPHLLPGDSLNLQSAQDTDNGYSTFEQSLLRYIA 360 Query: 738862 AALGIPYAHLSQDMVKANYSNARTALMEFRRRVEAFQHSVLVYQLCRPVWARFTDLAVLT 739041 A LG+ Y LS++ + +YS AR + E + V Q C+ ++ + + A++ Sbjct: 361 AGLGVSYEQLSRNYSQMSYSTARASANESWAYFMGRRKFVASRQACQ-MFLCWLEEAIVR 419 Query: 739042 GAVRLP-----GYERRRRDYLACEWLPPKWQWVDPLKDIRAEIEEIGAGLKSRSQAIGER 739206 V LP ++ R + W+ +D LK+++ + I AGL + + +R Sbjct: 420 RVVTLPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKR 479 Query: 739207 GYDAEEVDRQIAADRKREGRFGLD 739278 G D +E+ Q + GL+ Sbjct: 480 GDDYQEIFAQQVRESMERRAAGLN 503 >ref|YP_024510.1|putative ribonucleotide reductase large subunit Length = 704 Score = 98.6 bits (244), Expect = 8e-19 Identities = 125/546 (22%), Positives = 198/546 (36%), Gaps = 82/546 (15%) Frame = -2 Query: 638470 LFNCFVMGTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLS 638291 L +C++ V DS+ + A GGG+ D + IRP+GA V+ + G ++ Sbjct: 167 LSSCYLF-VVDDSIESLNFVEDSVANASSNGGGVAIDLTRIRPKGAPVRNRPNSSKGVIA 225 Query: 638290 FMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVT 638123 F + G R+G+ + H DI + +KK + RL ++ V + Sbjct: 226 FAKAIEHKVSIYDQGGVRQGSGAVYLNIFHNDILDLLSSKKINASESVRLDKLSIGVTIP 285 Query: 638122 DAFMEAVKADGPW-----------------ELTFG------------GKVYRTLQARDLW 638030 + FME VK P+ EL GKV AR++ Sbjct: 286 NKFMELVKEGKPFYTFDTYDINKMYGKYLDELNIDEWYDKLLNNDSIGKVKH--DAREVM 343 Query: 638029 NRIMRSTYDFAEPGVIFIDRINQMNNLAYCETISATNPCGE-------QPLPPYG----- 637886 I ++ + P V +ID N + L + +N C E + PY Sbjct: 344 TDIAKTQLESGYPYVFYIDNANDNHPLKNLGKVKMSNLCTEISQLQEVSEIYPYSYSNQN 403 Query: 637885 ------ACLLGSVNLARLVAKPFSXXXXXXXXXXXXXXXXAVRMMDNVVDASRFP-LPEQ 637727 C LGS+NL +V K R + V D P LP Sbjct: 404 VINRDVVCTLGSLNLVNVVEK----------GLLNESVDIGTRALTKVTDIMDLPYLPSV 453 Query: 637726 AREAQMKRRIGLGVTGLADALLMVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKG 637547 + R IGLG L L + YGS EA + AI + S +A+E G Sbjct: 454 QKANDDIRAIGLGSMNLHGLLAKNMISYGSREALDLVNSLYSAINFQSIKTSMLMAKETG 513 Query: 637546 -AFPLFEAD---------KYLGSGSLTHMD-----------------EDVRAAIRTHGIR 637448 F FE +Y+ + D +++ A++ HG+ Sbjct: 514 KPFKGFEKSDYATGEYFVRYIRESNQPKTDKAKKVLDKVYIPTQDDWDELAKAVKVHGLY 573 Query: 637447 NALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRKVLQKDGSRTEEEVVDYAVRLWREQM 637268 N + APT +IS Y N +S I PV + R+ G + Y Sbjct: 574 NGYRKAEAPTQSIS-YVQNATSSIMPVPSAIENRQY----GDMETYYPMPYL-------- 620 Query: 637267 GDAPLPDYFVNAQTLAPLEHVRM---QAAAQKWIDSSISKTINCPEDIGFEEFADVYLAA 637097 +P+ +F +T +++ R+ A QK D ++S + +I + +Y A Sbjct: 621 --SPITQFFYEGETAYKIDNKRIINTSAVVQKHTDQAVSTILYVESEIPTNKLVSLYYYA 678 Query: 637096 WDQGCK 637079 W+QG K Sbjct: 679 WEQGLK 684 >ref|NP_040583.1|capsid component Length = 533 Score = 98.6 bits (244), Expect = 8e-19 Identities = 120/516 (23%), Positives = 205/516 (39%), Gaps = 61/516 (11%) Frame = -2 Query: 907108 PVMAGP----FLRRLGAWVGGFDAGLANRRLRGFRPARAHVNXXXXXAGPDMNARARYLV 906941 P + GP LR + GG +G + LR + P V+ NARA LV Sbjct: 7 PTLLGPDGMTSLREYAGYHGG-GSGFGGQ-LRSWNPPSESVDAALLPNFTRGNARADDLV 64 Query: 906940 RNNGYAQGALDSWAANTVGTGVKPSSLIA----------APARKAALQRLWQDWTDE--- 906800 RNNGYA A+ + VG+ + S + A A ++ W+++ ++ Sbjct: 65 RNNGYAANAIQLHQDHIVGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCC 124 Query: 906799 -ADAEGVTDFYGLQRRIAREFFLTGECFVRLRARRPGDGLTVPLQLQCLPSEMLPIGRTE 906623 D E F + R GE FV+ L P + T Sbjct: 125 CIDVERKRTFTMMIREGVAMHAFNGELFVQATWDTSSSRLFRTQFRMVSPKRISNPNNT- 183 Query: 906622 VLGGGRAIRQGIEFDAVGRRVAYHFHRR-HPGDPTEPGLAGETVRVPAE------DVLHI 906464 G R R G++ + G + Y+ +PG + + +P E +H+ Sbjct: 184 --GDSRNCRAGVQINDSGAALGYYVSEDGYPG-----WMPQKWTWIPRELPGGRASFIHV 236 Query: 906463 VDPVESGQLRGVSRFAPAIVKLFLLDQYDDAELDRKKVAAMYAMFITSN-DPDAA----- 906302 +PVE GQ RG + F + ++ +LD + +L V AMYA I S D +A Sbjct: 237 FEPVEDGQTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFIL 296 Query: 906301 ---------PLEGELGD----------QVAPGQIVRLDPGEDMKVADPADSGATYEPFQY 906179 L G +G+ ++ ++ L PG+ + + D+ Y F+ Sbjct: 297 GANSQEQRERLTGWIGEIAAYYAAAPVRLGGAKVPHLMPGDSLNLQTAQDTDNGYSVFEQ 356 Query: 906178 RTLLQVSAALGIPYAHLSQDMVKANYSNARTALMEF------RRRVEAFQHSVLVYQLCR 906017 L ++A LG+ Y LS++ + +YS AR + E RR+ A + + ++ LC Sbjct: 357 SLLRYIAAGLGVSYEQLSRNYAQMSYSTARASANESWAYFMGRRKFVASRQASQMF-LC- 414 Query: 906016 PVWARFTDLAVLTGAVGLP-----GYERRRRDYLACEWLPPKWQWVDPLKDIRAEIEEIG 905852 + + A++ V LP ++ R + C+W+ +D LK+++ + I Sbjct: 415 -----WLEEAIVRRVVTLPSKARFSFQEARSAWGNCDWIGSGRMAIDGLKEVQEAVMLIE 469 Query: 905851 AGLKSRSQAIGERGYDAEEVDRQIAADRKREGRLGL 905744 AGL + + +RG D +E+ Q + GL Sbjct: 470 AGLSTYEKECAKRGDDYQEIFAQQVRETMERRAAGL 505 Score = 67.8 bits (164), Expect = 1e-09 Identities = 69/289 (23%), Positives = 122/289 (42%), Gaps = 40/289 (13%) Frame = +1 Query: 738529 RVAPLGRAINLHG----AGRQLRGVSRFAPAIVKLFLLDQYDDAELDRKKVAAMYAMFIT 738696 R P GRA +H Q RG + F + ++ +LD + +L V AMYA I Sbjct: 224 RELPGGRASFIHVFEPVEDGQTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIE 283 Query: 738697 SN-DPDAAP--------------LEGELGD----------QVAPGQIVRLDPGEDMKVAD 738801 S D +A L G +G+ ++ ++ L PG+ + + Sbjct: 284 SELDTQSAMDFILGANSQEQRERLTGWIGEIAAYYAAAPVRLGGAKVPHLMPGDSLNLQT 343 Query: 738802 PADSGATYEPFQYRTLLQVSAALGIPYAHLSQDMVKANYSNARTALMEF------RRRVE 738963 D+ Y F+ L ++A LG+ Y LS++ + +YS AR + E RR+ Sbjct: 344 AQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSRNYAQMSYSTARASANESWAYFMGRRKFV 403 Query: 738964 AFQHSVLVYQLCRPVWARFTDLAVLTGAVRLP-----GYERRRRDYLACEWLPPKWQWVD 739128 A + + ++ LC + + A++ V LP ++ R + C+W+ +D Sbjct: 404 ASRQASQMF-LC------WLEEAIVRRVVTLPSKARFSFQEARSAWGNCDWIGSGRMAID 456 Query: 739129 PLKDIRAEIEEIGAGLKSRSQAIGERGYDAEEVDRQIAADRKREGRFGL 739275 LK+++ + I AGL + + +RG D +E+ Q + GL Sbjct: 457 GLKEVQEAVMLIEAGLSTYEKECAKRGDDYQEIFAQQVRETMERRAAGL 505 >ref|NP_892074.1|partitioning protein SpyA Length = 389 Score = 97.4 bits (241), Expect = 2e-18 Identities = 86/280 (30%), Positives = 128/280 (45%), Gaps = 8/280 (2%) Frame = -2 Query: 940315 FTLEEVLALRNFFAEEGAAKKEYRPYRPKGLPAKVVAVANFKGGVGKTSTAAHLAMSAAL 940136 +T++++ LR+ F R RP G V+A+A KGG KTST+ H A AL Sbjct: 82 YTIQQINDLRDHFGT--------RWKRPDGQDPVVLAIAAHKGGAYKTSTSVHTAQWLAL 133 Query: 940135 DGYRVLVIDLDSQGSMTSIMGGRVADEWQTVFPLLAKDYALHVREENEVREAKGEGPLPL 939956 G RVL+ID + S+ G V D LH+ E+ + P L Sbjct: 134 QGLRVLLIDATDPQATASLYHGYVPD--------------LHIHEDETLL------PYYL 173 Query: 939955 DETLTEALKITAADVVQKTHWPNIDLIGAQLNLYWAEFQVPVWRMMLRRWPLWDALTGFL 939776 E + A ++ T WPN+D+I + L ++ E ++ +PL DA + Sbjct: 174 GE------RDDAMYAIKPTCWPNLDIIPSCLAIHRIESEL---------YPLHDAEKLPV 218 Query: 939775 GREGLLR--------DYDIILLDTPPALGYLTINALAAADILLVPLGASFLEFDSTGRFF 939620 +LR YD+++LD+ P LG TIN + AAD+++VP A ++ ST +FF Sbjct: 219 APHMMLRAAIESVWDSYDVVVLDSAPNLGIGTINVVCAADVIVVPTPAELYDYVSTLQFF 278 Query: 939619 DMLYSTFASIEDGENAARRTAGLPEMKFEWDVVRALITRF 939500 ML A ++ G FE D VR LIT+F Sbjct: 279 TMLRDLMAGVDLG-------------GFEPD-VRVLITKF 304 >ref|NP_046572.1|ABC transporter Length = 705 Score = 97.1 bits (240), Expect = 2e-18 Identities = 64/215 (29%), Positives = 108/215 (50%) Frame = -2 Query: 125404 IRFEGVGFGYDQGRPVLSGIDLSVRPGETLAFVGPSGAGKTTLLALVPRFYDPECGRITI 125225 I+ + G D R ++ I+L + + + +G SG GK+T + + Y I + Sbjct: 483 IKTVNLNIGADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYL 542 Query: 125224 DGMDLTDMTLESLRRRIGIVSQDVFLFGGTLRENIAYGRLEATEAEIRRAADQAQLGPMI 125045 +G+D+ S+R+RI + ++ FLF GT++EN+ G + + EI A +Q I Sbjct: 543 NGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEI-FDQNEIENACIMSQCHEFI 601 Query: 125044 AALPEGLDTVVGERGVMLSGGQKQRVAIARAFLKNPPILILDEATSALDTETEREIQAAL 124865 L + + E G LS GQKQR+A+ARA L P +LILDE+ S +D + + I L Sbjct: 602 CNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETL 661 Query: 124864 DALAVGRTTLIIAHRLATIRHADRIVVMEAGRIVE 124760 + ++I H + ++ +V RI+E Sbjct: 662 HRMDC--LIILITHNDPSNFKYNKKLVFRNNRIIE 694 Score = 63.2 bits (152), Expect = 4e-08 Identities = 53/212 (25%), Positives = 101/212 (47%), Gaps = 7/212 (3%) Frame = -1 Query: 460961 VIPSLSLSVRRGEMVAFLGPSGCGKTTTLRMIAGLLDPTRGRISVGGREIT---HLPVHD 460791 ++ ++L + R + V +G SG GK+T + ++ L I + G +I HL + Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 460790 RDMGMVFQSYALFPHMTVSQNVAFG--LEMRRMAKAEIRSRVERALAMV--QLGHLAGRK 460623 R + + ++ LF T+ +N+ G + + A I S+ + + Q + Sbjct: 558 RIV-YIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSEN 615 Query: 460622 PKALSGGQQQRVALARALVVEPSILLLDEPLSNLDAKLRDEMRVQIRSLQQQSGITAVFV 460443 LS GQ+QR+ALARA++ +P +L+LDE LSN+D D ++ +L + + + + Sbjct: 616 GSNLSTGQKQRLALARAILHQPQVLILDESLSNIDP---DNTKLIYETLHRMDCL-IILI 671 Query: 460442 THDQVEALSMCDRIVVMRGGHVEQFGTPNEIY 460347 TH+ ++V +E + N+ Y Sbjct: 672 THNDPSNFKYNKKLVFRNNRIIESSYSENKEY 703 Score = 62.4 bits (150), Expect = 6e-08 Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 7/204 (3%) Frame = -3 Query: 402846 VADVSHLFVGGSYVCLLGPSGCGKSSTLRMIAGHETVSEGSILLSGKDVTRLP--PARRG 402673 V D++ + V ++G SG GKS+ + ++ V + SI L+G D+ R R+ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 402672 TAMMFQSYALFPHLSVTDNVAFS--LKMKGVEAAQRRAKAAEMLELVDMGRYADRLP--- 402508 + ++ LF ++ +N+ +E A ++ E + +D +Y+ +L Sbjct: 559 IVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDK-QYSYKLSENG 616 Query: 402507 AQLSGGQQQRVALARALITGPQVLLLDEPLSALDPFLRIRMRAELKRLQRELGISFIHVT 402328 + LS GQ+QR+ALARA++ PQVL+LDE LS +DP + L R+ I +T Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMD----CLIILIT 672 Query: 402327 HGQDEALALADEIVVMNNAKIEQA 402256 H ++V NN IE + Sbjct: 673 HNDPSNFKYNKKLVFRNNRIIESS 696 Score = 61.2 bits (147), Expect = 1e-07 Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 10/206 (4%) Frame = -3 Query: 345891 VIHGVDFEIADGEFVVIVGPSGCGKSTLLRMVAGLEEITAGEIAIGGRVVNR---LEPRE 345721 ++ ++ + + V+I+G SG GKST + ++ L ++ I + G +NR L R+ Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 345720 RDIAMVFQNYALYPHMTVRENMAYGLRIAKLSKAEIEERVARSATMLELGQL-------L 345562 R I + +N L+ T++EN+ G + EIE S + L L Sbjct: 558 R-IVYIDENPFLFKG-TIKENLCMG---EIFDQNEIENACIMSQCHEFICNLDKQYSYKL 612 Query: 345561 DRKPRQLSGGQRQRVAMGRALVRNPAAFLLDEPLSNLDAKLRVQMRLQIKELQRTVRTTS 345382 LS GQ+QR+A+ RA++ P +LDE LSN+D +L + L R + Sbjct: 613 SENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPD---NTKLIYETLHR-MDCLI 668 Query: 345381 IYVTHDQVEAMTLADRLVVMNAGVAE 345304 I +TH+ +LV N + E Sbjct: 669 ILITHNDPSNFKYNKKLVFRNNRIIE 694 Score = 57.0 bits (136), Expect = 3e-06 Identities = 43/163 (26%), Positives = 82/163 (50%), Gaps = 7/163 (4%) Frame = +2 Query: 528221 VLRDINLRVATGEMVFVIGPSGSGKSTMLRCCNRLEEPTSGAILIDGKDIVGCSSSALNR 528400 ++ DINL + + V +IG SG+GKST + ++L + +I ++G DI ++ + Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 528401 MRL---EVGMVFQGFHLYPHMTVVANVMLAQIKALKRSKD----EARERALAMLDRVGLR 528559 + E +F+G T+ N+ + +I ++ + LD+ Sbjct: 558 RIVYIDENPFLFKG-------TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDK-QYS 609 Query: 528560 HRAETMPTQLSGGQQQRVAIARALALDPKVMLFDEPTSALDPE 528688 ++ + LS GQ+QR+A+ARA+ P+V++ DE S +DP+ Sbjct: 610 YKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPD 652 Score = 56.6 bits (135), Expect = 3e-06 Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 5/203 (2%) Frame = -3 Query: 98316 DISLEIPPGKITVIMGLSGSGKSTLIRHINGLIAPTAGEILFDGADVCKMTPTELRAFRR 98137 DI+L + +I+G SG+GKST + ++ L I +G D+ + +R Sbjct: 501 DINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIR---- 556 Query: 98136 TRTAMVFQKFGLLPHRTVLENTCYGLDIRGMSRSEAEPVARRWIDRVGLKGYEESYS--- 97966 + + + L T+ EN C G +I + E + + + + + SY Sbjct: 557 -KRIVYIDENPFLFKGTIKENLCMG-EIFDQNEIENACIMSQCHEFICNLDKQYSYKLSE 614 Query: 97965 --SQLSGGMQQRVGLARALATDADILLMDEAFSALDPLIRLDMQAVLLELQEELHKTIVF 97792 S LS G +QR+ LARA+ +L++DE+ S +DP D ++ E + I+ Sbjct: 615 NGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDP----DNTKLIYETLHRMDCLIIL 670 Query: 97791 ITHDLDEALRLGDRIAILRDGRL 97723 ITH+ + ++ + R+ R+ Sbjct: 671 ITHNDPSNFKYNKKL-VFRNNRI 692 Score = 56.2 bits (134), Expect = 4e-06 Identities = 41/180 (22%), Positives = 86/180 (47%), Gaps = 7/180 (3%) Frame = +2 Query: 651614 DVSFSIREGEVHALLGENGAGKSTLVKMIYGLVRPDEGRMRLRGQDYXXXXXXXXXXXGV 651793 D++ + + ++GE+G GKST K + L + + + L G D + Sbjct: 501 DINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR-I 559 Query: 651794 AMVFQHFSLFEAMNVAENVALG-------MEDPPKLRDLAARIRQVSEEYGLPLDPDRMV 651952 + ++ LF+ + EN+ +G +E+ + I + ++Y L + Sbjct: 560 VYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENG-- 616 Query: 651953 GDLSAGERQRVEIVRCLLQDPKLLIMDEPTSVLTPQEVEILFQTLRQLSSEGTAILYISH 652132 +LS G++QR+ + R +L P++LI+DE S + P +++++TL ++ I+ I+H Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMD---CLIILITH 673 Score = 53.9 bits (128), Expect = 2e-05 Identities = 52/209 (24%), Positives = 97/209 (46%), Gaps = 3/209 (1%) Frame = -1 Query: 600263 VLSDIDLRIGRGETVALVGESGSGKSTLGRVIAGLKAPSAGRALFDGAALPPKLRQRPLE 600084 ++ DI+L + R + V ++GESG+GKST + ++ L +G + R Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDI-----NRYDH 552 Query: 600083 LLRRIQIIYQSADTALNPRQTVRAIVGRPLTLYQGLRGAAREKRLIELLRMVELDESHAE 599904 L R +I+Y + L + + + A + E + LD+ ++ Sbjct: 553 LSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFI--CNLDKQYSY 610 Query: 599903 RLP---GQLSGGQKQRVAIARALAAGPELIICDEITSALDKVVQADVLRMMIGLKERLGV 599733 +L LS GQKQR+A+ARA+ P+++I DE S +D D +++ R+ Sbjct: 611 KLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNID----PDNTKLIYETLHRMDC 666 Query: 599732 SYLFITHDIEVVRAIADRVVVMQHGRIVE 599646 + ITH+ + ++ +V ++ RI+E Sbjct: 667 LIILITHN-DPSNFKYNKKLVFRNNRIIE 694 Score = 53.5 bits (127), Expect = 3e-05 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 8/156 (5%) Frame = -2 Query: 211327 LIGPDGVGKSTLLALVAGVRRLQGGGLTVLGHDMTRRAERQAVAPRVAYMPQGLGRNLYP 211148 +IG G GKST ++ + ++ + + G D+ R + ++ R+ Y+ + P Sbjct: 514 IIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRY-DHLSIRKRIVYIDEN------P 566 Query: 211147 TL---TVRENLEFFGRLFGQKAPERA----QRIEMLLRATGLDPFPDRPAGK-LSGGMKQ 210992 L T++ENL G +F Q E A Q E + + G LS G KQ Sbjct: 567 FLFKGTIKENL-CMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQ 625 Query: 210991 KLSLCSALIHDPDLLILDEPTTGVDPLSRRQFWELI 210884 +L+L A++H P +LILDE + +DP + + +E + Sbjct: 626 RLALARAILHQPQVLILDESLSNIDPDNTKLIYETL 661 Score = 52.8 bits (125), Expect = 5e-05 Identities = 63/258 (24%), Positives = 112/258 (43%), Gaps = 11/258 (4%) Frame = -1 Query: 307340 EAVGEPYQPHSRP-LIEIDDLE----VSFPAGGSPWARRRFKAVDGVSLRIGRGETVGIV 307176 + V P Q S L E+D ++ V+ G P V+ ++L + R + V I+ Sbjct: 460 DVVNYPVQQDSNENLTELDFIQNIKTVNLNIGADPMRY----IVEDINLILDRKDKVLII 515 Query: 307175 GESGSGKSTLARTLLGLQPVTSGHVAFDGSVXXXXXXXXXXXXXXXXAMVFQDPF---NA 307005 GESG+GKST A++L L V + +G + ++PF Sbjct: 516 GESGTGKSTFAKSLSKLYKVPDKSIYLNG---LDINRYDHLSIRKRIVYIDENPFLFKGT 572 Query: 307004 LNPRLTVGETLAEVLRVQGKVARAAIPARVNELLDMVGLDRGFA---DRRPRSLSGGQCQ 306834 + L +GE Q ++ A I ++ +E + LD+ ++ +LS GQ Q Sbjct: 573 IKENLCMGEIFD-----QNEIENACIMSQCHEFI--CNLDKQYSYKLSENGSNLSTGQKQ 625 Query: 306833 RAGIARALAVDPTLIVADECVAALDVTIQAQIVELFRTLVAAQGLTLLFIAHDLAIVRSL 306654 R +ARA+ P +++ DE ++ +D I E TL L +L +D + + Sbjct: 626 RLALARAILHQPQVLILDESLSNIDPDNTKLIYE---TLHRMDCLIILITHNDPSNFK-- 680 Query: 306653 CERVVVMQHGRVVEDGPS 306600 + +V ++ R++E S Sbjct: 681 YNKKLVFRNNRIIESSYS 698 Score = 52.8 bits (125), Expect = 5e-05 Identities = 45/194 (23%), Positives = 94/194 (48%), Gaps = 4/194 (2%) Frame = +2 Query: 294026 AKPVRAL-KGISFTVEQGRTLAVVGESGCGKSTLARIITLIDPATEGELLIDGEPIDIAT 294202 A P+R + + I+ +++ + ++GESG GKST A+ ++ + + + ++G I+ Sbjct: 492 ADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYD 551 Query: 294203 QGLPAGLRRKVQIVFQNPY---GSLNPRQKVGDMLMEPLILNTEDSAAQRREKAMAMLVK 294373 +R+++ + +NP+ G++ +G++ + I N + + + L K Sbjct: 552 H---LSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENA--CIMSQCHEFICNLDK 606 Query: 294374 VGLLPEHFHRYPHMFSGGQRQRLAIARALMVNPRLLVLDEPVSALDLSVQAQVLNLLADL 294553 S GQ+QRLA+ARA++ P++L+LDE +S +D L+ + Sbjct: 607 Q--YSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNID----PDNTKLIYET 660 Query: 294554 QEEFDLTYVFISHD 294595 D + I+H+ Sbjct: 661 LHRMDCLIILITHN 674 Score = 52.4 bits (124), Expect = 6e-05 Identities = 44/197 (22%), Positives = 96/197 (48%), Gaps = 12/197 (6%) Frame = -3 Query: 355119 HILHGVDLFVEEGETICILGRNGMGKTTTLRTIMGILRKRTGAIRFAGKDMMGVPLHRTA 354940 +I+ ++L ++ + + I+G +G GK+T +++ + + +I G D+ H + Sbjct: 497 YIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYD-HLSI 555 Query: 354939 REGLGFVPEERGIFATLSVEENLMLPPVVAKGGMS----VGEIYELFPNLKE----RRSS 354784 R+ + ++ E +F +++ENL + + + + + + +E NL + + S Sbjct: 556 RKRIVYIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSE 614 Query: 354783 PGTKLSGGEQQMLAMARILRTGARCLLLDEPTEGLAPVIIQRIGEVLIELRDRGMTVVLV 354604 G+ LS G++Q LA+AR + + L+LDE + P + I E L + ++L+ Sbjct: 615 NGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRM---DCLIILI 671 Query: 354603 ----EQNFRFASKVADR 354565 NF++ K+ R Sbjct: 672 THNDPSNFKYNKKLVFR 688 Score = 52.0 bits (123), Expect = 8e-05 Identities = 52/207 (25%), Positives = 98/207 (47%), Gaps = 7/207 (3%) Frame = +3 Query: 817233 VLRGIDLEVRKGELIALLGPSGSGKTTLLKIIAGL-DWPDAG----GLAVNGQDWLARKA 817397 ++ I+L + + + + ++G SG+GK+T K ++ L PD GL +N D L+ + Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIR- 556 Query: 817398 QERRTGFVFQHYALFPHMKVADNVAFGLTVLPRAQRPSAAKIRARVEELLHFL--QIAQL 817571 +R ++ ++ LF + +N+ G + + + +A I ++ E + L Q + Sbjct: 557 --KRIVYIDENPFLFKGT-IKENLCMG-EIFDQNEIENAC-IMSQCHEFICNLDKQYSYK 611 Query: 817572 ADRYPGELSGGQRQRVALGRALAIDPEILLLDEPFGALDAQVRRDLRRWLREVHDATGTT 817751 LS GQ+QR+AL RA+ P++L+LDE +D D + + E Sbjct: 612 LSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDP----DNTKLIYETLHRMDCL 667 Query: 817752 TIFVTHDQEEAFELADRVVIMGAGRIE 817832 I +TH+ F+ ++V IE Sbjct: 668 IILITHNDPSNFKYNKKLVFRNNRIIE 694 Score = 52.0 bits (123), Expect = 8e-05 Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 5/201 (2%) Frame = +1 Query: 796078 IHGVDLEVEDGEFVAFVGPSGCGKSTMLRMIAGLEDISGGHMRIGDRLVNDIEPKGRDVA 796257 + ++L ++ + V +G SG GKST + ++ L + + + +N + Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 796258 MVFQDYALYPHM-TVRDNIGFGLKMRGEPAET--IRKKVEEAARIL--QLEDLLDRRPGQ 796422 +V+ D + T+++N+ G E I + E L Q L Sbjct: 559 IVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSN 618 Query: 796423 LSGGQRQRVAMGRAIVRKPKVFLFDEPLSNLDAKLRVEMRTQIKRLHRMLRTTTIYVTHD 796602 LS GQ+QR+A+ RAI+ +P+V + DE LSN+D + + LHRM I +TH+ Sbjct: 619 LSTGQKQRLALARAILHQPQVLILDESLSNIDPD---NTKLIYETLHRM-DCLIILITHN 674 Query: 796603 QVEAMTLADRVVVLRKGSIIQ 796665 ++ +V R II+ Sbjct: 675 DPSNFKY-NKKLVFRNNRIIE 694 Score = 52.0 bits (123), Expect = 8e-05 Identities = 47/204 (23%), Positives = 92/204 (45%), Gaps = 6/204 (2%) Frame = -2 Query: 439594 LDGVDLTIRRGEFVAIMGPSGSGKSTAMNIIGCLDRPTSGRYLFEGTDVSXXXXXXXXXX 439415 ++ ++L + R + V I+G SG+GKST + L + G D++ Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 439414 XRHF--LGFVFQGFNLLARTTALENVELPLIY--KGLPRAERIEKAQRALARVG--LAGR 439253 + F+F+G T EN+ + I+ + A + + + + + + Sbjct: 559 IVYIDENPFLFKG-------TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYK 611 Query: 439252 EHHDPSQLSGGQQQRVAIARALAGEPAVILADEPTGNLDSQRSHEIMQLMQALNREGITI 439073 + S LS GQ+QR+A+ARA+ +P V++ DE N+D + I + L+R I Sbjct: 612 LSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLI---YETLHRMDCLI 668 Query: 439072 VMVTHEEDIAAYAGRLVVFTDGHL 439001 +++TH + + +VF + + Sbjct: 669 ILITHNDPSNFKYNKKLVFRNNRI 692 Score = 50.1 bits (118), Expect = 3e-04 Identities = 45/228 (19%), Positives = 99/228 (43%), Gaps = 10/228 (4%) Frame = -1 Query: 203939 EQTGGNMTHSEPLLSVRGVTIQYKT-PQHLITATYRVDFDVHQGDRFILLGPSGCGKSTL 203763 + + N+T + + +++ V + P I + D + D+ +++G SG GKST Sbjct: 468 QDSNENLTELDFIQNIKTVNLNIGADPMRYIVEDINLILD--RKDKVLIIGESGTGKSTF 525 Query: 203762 QKAVGGYITPCEGEIRLKGQKVKEPGP---DRMMVFQEFDQLLPWKTVKQNVAFA-LQTA 203595 K++ + I L G + + +V+ + + L T+K+N+ + Sbjct: 526 AKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQ 585 Query: 203594 KRLSRAEAEERAMHYVCKVGLEKF--ANSHPHMLSGGMKQRVAIARGMAMEPDILLMDEP 203421 + A + ++C + + + + LS G KQR+A+AR + +P +L++DE Sbjct: 586 NEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDES 645 Query: 203420 FAALDALTRRRMQDELLALWEETH---FTVLFVTHSIAEAIKIGNRIL 203286 + +D D ++E H ++ +TH+ K +++ Sbjct: 646 LSNID-------PDNTKLIYETLHRMDCLIILITHNDPSNFKYNKKLV 686 Score = 48.9 bits (115), Expect = 7e-04 Identities = 38/186 (20%), Positives = 84/186 (45%), Gaps = 7/186 (3%) Frame = +1 Query: 264547 RPVLAGASVTLHPGERLAILGANGSGKTTLLRTLVGLERPAAGRVCLFGEDCRSEAQFRV 264726 R ++ ++ L +++ I+G +G+GK+T ++L L + + L G D + Sbjct: 496 RYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSI 555 Query: 264727 ARRRMGFLFQDSDDQLFCPTVLEDVAFGPLNLGLSDGRXXXXXXXXXXXXXXXXXXDRVT 264906 +R ++ D + LF T+ E++ G + + + Sbjct: 556 RKR---IVYIDENPFLFKGTIKENLCMGEI---FDQNEIENACIMSQCHEFICNLDKQYS 609 Query: 264907 HR-------LSGGEKRLVCLAGLLAMRPEVLLLDEPTNGVDGENGRRLRAALAAFEGAMI 265065 ++ LS G+K+ + LA + +P+VL+LDE + +D +N + + L + +I Sbjct: 610 YKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHRMDCLII 669 Query: 265066 LVSHDE 265083 L++H++ Sbjct: 670 LITHND 675 Score = 48.5 bits (114), Expect = 0.001 Identities = 42/195 (21%), Positives = 94/195 (48%), Gaps = 4/195 (2%) Frame = -1 Query: 76457 NLTLAIEPGEFLSFLGPSGCGKTTALRMLAGFEQASEGQVLIDGRDATALP--AWQRPVN 76284 ++ L ++ + + +G SG GK+T + L+ + + + ++G D + ++ + Sbjct: 501 DINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIV 560 Query: 76283 MVFQQYALFPHLTVAQNVGYG--LNQRRPKPPRXXXXXXXXXXXXXVQLSGFGARRTWEL 76110 + + LF T+ +N+ G +Q + Q S + L Sbjct: 561 YIDENPFLFKG-TIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNL 619 Query: 76109 SGGQQQRVALARAIVNKPKILLLDEPMAALDKKLRHDMQIELKSLQRELGITFVLVTHDQ 75930 S GQ+QR+ALARAI+++P++L+LDE ++ +D + ++ ++L R + +L+TH+ Sbjct: 620 STGQKQRLALARAILHQPQVLILDESLSNIDP---DNTKLIYETLHR-MDCLIILITHND 675 Query: 75929 EEALSMSDRIVIMDH 75885 + ++V ++ Sbjct: 676 PSNFKYNKKLVFRNN 690 Score = 45.1 bits (105), Expect = 0.010 Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 14/201 (6%) Frame = -3 Query: 871083 VLKGVSLDVAQGEVVSIIGASGSGKSTFLRSINVM-EMPQAGT----MDFGDF-HFDFRK 870922 +++ ++L + + + V IIG SG+GKSTF +S++ + ++P +D + H RK Sbjct: 498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRK 557 Query: 870921 GAASHPTKVQLQKLRAEIGMVFQSYNLWPHMTVLQNVIHAPMTLRRTPRAQAVXXXXXXX 870742 L K G + + NL QN I + + Sbjct: 558 RIVYIDENPFLFK-----GTIKE--NLCMGEIFDQNEIENACIMSQCHEF---------- 600 Query: 870741 ARIGLYEKRDSYP-----ARLSGGQQQRVAIARALAMKPRLMLFDEVTSALDPE---LVH 870586 I +K+ SY + LS GQ+QR+A+ARA+ +P++++ DE S +DP+ L++ Sbjct: 601 --ICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIY 658 Query: 870585 EVLVLMASLAADGMTMLLVTH 870523 E L M L ++L+TH Sbjct: 659 ETLHRMDCL------IILITH 673 Score = 44.3 bits (103), Expect = 0.017 Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 12/184 (6%) Frame = -3 Query: 333588 LKSVSLDIREGEILALLGPNGAGKTTLISTICGIVRPTSGQVTVGGHDIAS-DWRAARAM 333412 ++ ++L + + + ++G +G GK+T ++ + + + + G DI D + R Sbjct: 499 VEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKR 558 Query: 333411 IGLVPQEIALEPFEKVFRSVSYARGLYGKPPDPAHVER--VLRQLSLW----DKKDSAI- 333253 I + + PF +F+ G+ D +E ++ Q + DK+ S Sbjct: 559 IVYIDEN----PF--LFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKL 612 Query: 333252 ----QPLSGGMKRRVLIAKALAHEPRVLFLDEPTAGVDVELRKDMWAVVEDLRAEGVTII 333085 LS G K+R+ +A+A+ H+P+VL LDE + +D + K + E L II Sbjct: 613 SENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTK---LIYETLHRMDCLII 669 Query: 333084 LTTH 333073 L TH Sbjct: 670 LITH 673 Score = 40.8 bits (94), Expect = 0.19 Identities = 22/62 (35%), Positives = 37/62 (59%) Frame = -2 Query: 665155 ADLSGGQFQRVLLARALLTEPELLMLDEPTQGLDQPGEAAFYRLIEEVRSTTGAAILMVS 664976 ++LS GQ QR+ LARA+L +P++L+LDE +D +LI E I++++ Sbjct: 617 SNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNT----KLIYETLHRMDCLIILIT 672 Query: 664975 HD 664970 H+ Sbjct: 673 HN 674 Score = 40.4 bits (93), Expect = 0.25 Identities = 18/34 (52%), Positives = 25/34 (73%) Frame = -1 Query: 210239 SLPLGIRQRLQLAVATIHEPRILILDEPTSGVDP 210138 +L G +QRL LA A +H+P++LILDE S +DP Sbjct: 618 NLSTGQKQRLALARAILHQPQVLILDESLSNIDP 651 >ref|NP_892050.1|capsid protein Length = 366 Score = 94.0 bits (232), Expect = 2e-17 Identities = 66/262 (25%), Positives = 110/262 (41%), Gaps = 2/262 (0%) Frame = +2 Query: 761783 HRGVAAGFMVQALARTKGDRDKAARLLEAEXXXXXXXXXXXXXXXXXXVTIPRPQAAELI 761962 ++G MV ++A KG+ AA+ E IP+ E+I Sbjct: 27 YKGAGMTRMVMSIAAGKGNLADAAKFAATELGDTGLSMAISTAAGSGGALIPQNMQNEVI 86 Query: 761963 EMLXXXXXXXXXXXXTLPMPAGEMRHAKQVGSXXXXXXXXXXXXXPSQPSFDKIDQSFKK 762142 E+L ++P+P G + + G + +FD + S K Sbjct: 87 ELLRDRTVVRILGARSIPLPNGNLSMPRLSGGATAGYVGEGKDVVATGATFDDVKLSAKT 146 Query: 762143 LLGMVPIGNSLLRHSGVAMAQLVRDDLLKVMALREDLAFLRGDGSADTPKGLR--HWMLX 762316 ++ +VP+ N L+ +G + QL+ D+L +A RED AFLR DG+ DTPKG++ Sbjct: 147 MIALVPVSNQLIGRAGFNVEQLLLGDILSAIATREDKAFLRDDGTGDTPKGMKAVATAAN 206 Query: 762317 XXXXXXXXXXXXXXXXXXIRRTVSLVEDADVGMVSPGWIMRASTKNWLASLKDPNGNPLF 762496 + + D++ M+ GW + T L L+D NGN ++ Sbjct: 207 RLVAWTGTAINLTTIDEYLDSLILKHMDSNSNMIRCGWGLSNRTYMTLFGLRDGNGNKVY 266 Query: 762497 PSIGASAQLMGFPIRTSSQRPA 762562 P + + L G+PI+ +S PA Sbjct: 267 PEM-SQGILKGYPIQRTSAIPA 287 >ref|NP_958081.1|gp25 Length = 161 Score = 93.6 bits (231), Expect = 2e-17 Identities = 47/121 (38%), Positives = 69/121 (57%) Frame = +2 Query: 421940 VMMALGSFRFGVNRAGYQSFSRSASWRWEAQDRLGRAPALQYLGPGSDEITLEGVIYPHF 422119 +M+ALG F F + YQS S +RW + DR+G+ PA Q+LG G I L G +YP Sbjct: 1 MMLALGMFVFELRTLPYQSMQHSKDYRWASNDRVGKPPAYQFLGEGETSIQLAGTLYPAI 60 Query: 422120 RGGLRQVELMRLVAGTGQPMVLVDGLGWVWERWVIATVEERKSLFLTDGAPRKIEFTLGL 422299 GG + + L+A G+ L++G G + ++I V + F +DGA RKI+FTL L Sbjct: 61 TGGHISLLAVELMADEGRAWPLIEGTGKILGMYIIDKVSTTHAEFFSDGAARKIDFTLSL 120 Query: 422300 R 422302 + Sbjct: 121 K 121 >ref|NP_039714.1|predicted 76.3Kd protein Length = 682 Score = 92.8 bits (229), Expect = 4e-17 Identities = 101/397 (25%), Positives = 149/397 (37%), Gaps = 29/397 (7%) Frame = -2 Query: 638443 VPDSMAGIFDALKEAALTMQQGGGIGY----DFSTIRPRGAEVKGVAADASGPLSF---- 638288 + DS G AL + T + G + Y D S IRP+GA++K ASGPL F Sbjct: 170 IEDSREGWAAALVDLIDTHYRPGTVHYQRVYDVSRIRPQGAKLKTFGGVASGPLPFAVML 229 Query: 638287 --------------------MDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK 638168 M+V A+ + +++ G RR A M+ M D I+ FI K Sbjct: 230 QKVANIFSEYAGITLDGIAAMEVDHAIAQCVVAGGVRRSARMSMMHWDDYQIDKFINIKA 289 Query: 638167 DPARLRMFNLSVLVTDAFMEAVKADGPWELTFGGKVYRTLQARDLWNRIMRSTYDFAEPG 637988 N+SV V D F K + + +A + + EPG Sbjct: 290 STGEHWTTNISVEVDDEFWRLAKEGYGSFAVAREDMPKQKRAHRVLKALSEGAVRNGEPG 349 Query: 637987 VIFIDRINQMNNLAYCETISATNPCGEQPLPPYGACLLGSVNLARLVAKPFSXXXXXXXX 637808 + + ++N+ + TNPCGE L P+ C LG +NLA V Sbjct: 350 MWD----SSLSNVGEPNRVVCTNPCGEITLEPWEPCNLGHINLAAFVTPAGKTDYLDLIR 405 Query: 637807 XXXXXXXXAVR-MMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYGSEE 637631 +R V D P+ RRIG+G G+A L + G RY Sbjct: 406 AHRLMTRFLIRATFSEVAD------PKSREVLDRNRRIGVGHLGVASYLALTGSRYSEAP 459 Query: 637630 AAARTEAWMKAIARSAYLASADLAREKGAFPLFEADKYLGSGSLTHMDEDVRAAIRTHGI 637451 R +++ +A A D E+ A D+R + Sbjct: 460 GDKRFTQFLREMA-----AEVDSEAERFA-------------------HDLRIPVPVK-- 493 Query: 637450 RNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRKV 637340 +IAPTGT++ G VS GI P+F+ + R+V Sbjct: 494 ----KRTIAPTGTVAKMPG-VSEGIHPIFSRYFIRRV 525 >ref|NP_052274.1|F protein Length = 161 Score = 92.4 bits (228), Expect = 6e-17 Identities = 45/121 (37%), Positives = 69/121 (57%) Frame = +2 Query: 421940 VMMALGSFRFGVNRAGYQSFSRSASWRWEAQDRLGRAPALQYLGPGSDEITLEGVIYPHF 422119 +M+ALG F F YQS S +RW + DR+G+ PA Q+LG G I L G +YP Sbjct: 1 MMLALGMFVFERRTLPYQSMQHSKDYRWASNDRVGKPPAYQFLGEGETSIQLAGTLYPAI 60 Query: 422120 RGGLRQVELMRLVAGTGQPMVLVDGLGWVWERWVIATVEERKSLFLTDGAPRKIEFTLGL 422299 GG ++ + ++A G+ L++G G + +++ V + F +DGA RKI+FTL L Sbjct: 61 TGGWISLKAVEVMANEGRAWPLIEGTGNILGMYIVDKVSTTHAEFFSDGAARKIDFTLSL 120 Query: 422300 R 422302 + Sbjct: 121 K 121 >ref|NP_665998.1|putative C5-cytosine methyltransferase Length = 283 Score = 91.7 bits (226), Expect = 9e-17 Identities = 64/178 (35%), Positives = 84/178 (47%), Gaps = 12/178 (6%) Frame = -1 Query: 887075 QAGFDVAAAVEIDPVHCAVHKFNFPDTA----------VIPRSVVGLTAEEIRESAGIGN 886926 +AGF AVE + ++ N + ++ R + + EI E+AGIG Sbjct: 47 RAGFKNLVAVEANQDAADTYRANLINDCENYGQDEPPVLMERDITKVATWEILEAAGIGV 106 Query: 886925 RPIDCVFGGPPCQGFSLIGHRALEDPRNSXXXXXXXXXXXLDARTFVFENVKGLTVGSHR 886746 + V GGPPCQGFS IG R +DPRN FV ENV GL Sbjct: 107 GQLTAVSGGPPCQGFSHIGKREEDDPRNELYLEMVRIVHQAKPVFFVMENVPGLATMHDG 166 Query: 886745 TFLSELVAAFGMAGYDVRLPWKVLDAADYGTPQHRQRLFLIGAKRGET--LPEIPPPQ 886578 + E+ F GY+V W DAADYG PQHR+R+ +IG KR + +PE PQ Sbjct: 167 EAIMEVCENFEAGGYEV--TWDKHDAADYGVPQHRERVLVIG-KRVDVMGMPEEGNPQ 221 >ref|NP_945089.1|gp58 Length = 297 Score = 90.9 bits (224), Expect = 2e-16 Identities = 91/293 (31%), Positives = 120/293 (40%), Gaps = 11/293 (3%) Frame = -3 Query: 874470 MPDRPDIPLNALRTFEVAARQGSFTRAAVELRVTQAAVSHQIARLEDMLGVILFQRTPGG 874291 M +P PL L F+ AAR G+FTRAA EL V Q AVS Q+ +LE LG LF R Sbjct: 1 MKIQPLPPLQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKA 60 Query: 874290 LMLTDAGQALFPVMERGLDDIARMLDRVAAGQAGEVLNIGVVTTFAAGWLIPRQQAFGRA 874111 L LT AGQ + L D V Q L I + A +L R F Sbjct: 61 LHLTRAGQQYADRVHAILADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAE 120 Query: 874110 HPGITLRLSTHNNRVEIAREGLDAAIRF-GDGQWPGLEAHHIMDAPMTPFCAPDL--GLR 873940 HP +++R+ + D + + D PG+ I+ + +CAP G R Sbjct: 121 HPEVSVRILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRR 180 Query: 873939 V-PSDLHRHTLLRSYRADE----WPAWFAQT-GESCPSLTGPILDSSIG-LADLASERFG 873781 V P DL TLL + W WF T GE I +S L LA G Sbjct: 181 VPPQDLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHG 240 Query: 873780 IALLPAPMFERHVRAGRLTRPFATTVTL-GSYWLTVPKERRMTSASRALLDWM 873625 L M V +G+L + G+Y + P +RR T A +W+ Sbjct: 241 AILGWKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWL 293 Score = 80.9 bits (198), Expect = 2e-13 Identities = 74/291 (25%), Positives = 125/291 (42%), Gaps = 4/291 (1%) Frame = -1 Query: 449414 LSFFVMLARRESFSATAQDLGLSASAVSRRLARLEDRLGVRLLNRTTRKVSLTSEGEAYY 449235 L FF AR +F+ A++L ++ AVS+++ +LE LG L R + + LT G+ Y Sbjct: 12 LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71 Query: 449234 GAALRLLDEIADLEHNLSQGRDRPAGLLRINATLGFGRTHLAPAIARFRRIHPAVEVQLL 449055 +L + +E +++ L I G LA IA F HP V V++L Sbjct: 72 DRVHAILADC--VEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRIL 129 Query: 449054 LTDAPLNLVEEGIDLGIRF--GAPPFGRMVMRLLQRNRRFLCAAPSYLEARGVPQSLTDL 448881 + + NL D+G+ + PP G ++ + C AP++L R VP DL Sbjct: 130 VREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYC-APTFLAGRRVPPQ--DL 186 Query: 448880 QQHSCIVLRQDHDAYDVWR-FDDIGEASPSAKVSGELSTNDGEIALAWVLDGQGIMLRSE 448704 + + +V + + WR + + + + +S N + L L G G +L + Sbjct: 187 MEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAILGWK 246 Query: 448703 WDIAQHVREGRLRLLLPHYRQTANIH-AIYPERHNLSAKVRVFADHLAAHV 448554 I V G+L L + + I+P + V +F + L HV Sbjct: 247 HMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLLTHV 297 Score = 55.8 bits (133), Expect = 6e-06 Identities = 62/241 (25%), Positives = 99/241 (41%), Gaps = 9/241 (3%) Frame = -3 Query: 464595 ARLGSFRAAAERLNTTQAAVSNRIATLEAALGQDLFERMPGGVRLSPIGQRAIAPAEDLM 464416 AR G+F AAE LN Q AVS ++ LE LG LF R + L+ GQ+ ++ Sbjct: 19 ARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHAIL 78 Query: 464415 RSAMEFRISVGRPEQLRSTVRIGTIDSIVQAWLPRFIERVRELYPGLTLDLNVDTSRGIA 464236 +E V + EQ ++ I +L I +P +++ + V R Sbjct: 79 ADCVEATALVMK-EQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSVRILV---REGV 134 Query: 464235 REIVERKIDLAL-LMGPVLEAGLRNVDLGSMDCAWVAAPGFGLGGRRIGLADLVDLPILT 464059 + + D+ + + V G+ + + D AP F L GRR+ DL++ +L Sbjct: 135 FNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTF-LAGRRVPPQDLMEATLLV 193 Query: 464058 FSRNSDPHV----WLMRQFEELRLPQPAISNSNSLSAMLRLALEGVGVAL----MTRPVV 463903 + W E+ ++NS +L+LAL G G L M P+V Sbjct: 194 AEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAILGWKHMITPLV 253 Query: 463902 E 463900 E Sbjct: 254 E 254 Score = 47.4 bits (111), Expect = 0.002 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 1/115 (0%) Frame = +3 Query: 205836 AVSEHGTFSAAAESVFLTHAAVSQQMQKLEEDFGIRLFDRSRRSPELTPLGQAFVSRARD 206015 A + HG F+ AAE + + AVS+Q+ KLE G LF R ++ LT GQ + R Sbjct: 17 AAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYADRVHA 76 Query: 206016 VVA-AYDGLALAVTGEGSVEGTIRLGAVPTTLIGLIPVAVTLLKRDFPALSVTIV 206177 ++A + AL + + TI + TL + + + P +SV I+ Sbjct: 77 ILADCVEATALVMKEQTPHSLTIACASGTATL--FLADRIAEFSAEHPEVSVRIL 129 Score = 43.5 bits (101), Expect = 0.029 Identities = 38/125 (30%), Positives = 53/125 (42%) Frame = +2 Query: 533360 LRLLEIFAAMMRAGTTVEAAEMLGVSQPAVSAGLKQLETQLGIVLFERASRRMMPTAEAR 533539 L+ L F A R G AAE L V+Q AVS + +LET LG LF R ++ + T + Sbjct: 9 LQCLVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 68 Query: 533540 ELFAEIRPMFSMLRSFTQTARDIREGLSGRLRIISTPPIGHTLAPRALVEFLRERPGVSV 533719 + + + + TA ++E L I + EF E P VSV Sbjct: 69 QYADRVHAI--LADCVEATALVMKEQTPHSLTIACASGTATLFLADRIAEFSAEHPEVSV 126 Query: 533720 AFDVR 533734 VR Sbjct: 127 RILVR 131 >ref|YP_195230.1|PhoH Length = 250 Score = 90.5 bits (223), Expect = 2e-16 Identities = 55/206 (26%), Positives = 107/206 (51%), Gaps = 10/206 (4%) Frame = -3 Query: 692421 VEPRTEAQKAYVANLFDHELAFGIGPAGTGKTYLAVAVGVTMLIGGVV--DRIILSRPAV 692248 +EP T+ Q+ + + + G AGTGKT++A+ + + ++ D++ + R V Sbjct: 34 IEPLTDNQRVMFSEYGQGKNIYAYGCAGTGKTFVALYLALKDVLDEYTPYDKVYIVRSLV 93 Query: 692247 EAGERLGFLPGDMKEKIDPYMQPLYDALNDFL-----PQKQLM--KLMEEKRIEIAPLAF 692089 E +GFLPG ++K Y P + + P +++ L +++ I +F Sbjct: 94 ATRE-IGFLPGTHEDKASLYQIPYKNMVKSMFEMPDDPSFEMLYENLKQQETISFWSTSF 152 Query: 692088 MRGRTLSNAFVVLDEAQNATTMQMKMFLTRLGEGSRMVVTGDRTQIDLPR-GTASGLADA 691912 +RG TL N+ +++DE QN ++ +TR+G+ S+++ GD Q DL + +G+ D Sbjct: 153 LRGSTLDNSIIIVDECQNLNFHELDSIMTRVGQDSKIIFCGDANQSDLQKTNERTGILDF 212 Query: 691911 ERVLKSVRGVSFNYFTAKDVVRHPLV 691834 +R+++ + S + +D+VR LV Sbjct: 213 QRIIQKMNEFSLIEYGIEDIVRSGLV 238 >ref|YP_006605.1|Gp25 Length = 387 Score = 89.0 bits (219), Expect = 6e-16 Identities = 103/409 (25%), Positives = 174/409 (42%), Gaps = 9/409 (2%) Frame = -2 Query: 940462 APDGKKRLRKFSTWEICRYLIPVASSHLRRVLRNNPELP-----QGEGEGGAKWFTLEEV 940298 +P+ +K R++ E+ LI V+ +R +N P +G E A +T++++ Sbjct: 30 SPEARKITRRWGITEVAD-LIGVSPQAIRDAEKNGRLPPPDFELRGRVERRAG-YTIDQI 87 Query: 940297 LALRNFFAEEGAAKKEYRPYRPKGLPAKVVAVANFKGGVGKTSTAAHLAMSAALDGYRVL 940118 +RN F RP V+AV + KGGV KTS+A H A AL G+RVL Sbjct: 88 SHMRNIFGNPNQ--------RPADKNPAVLAVMSHKGGVYKTSSAVHEAQWLALQGHRVL 139 Query: 940117 VIDLDSQGSMTSIMGGRVADEWQTVFPLLAKDYALHVREENEVREAKGEGPLPLDETLTE 939938 +I+ + S+ G V D LH+ ++ + P L E Sbjct: 140 LIEGNDPQGTASMYHGYVPD--------------LHIHADDTLL------PFYLGE---- 175 Query: 939937 ALKITAADVVQKTHWPNIDLIGAQLNLYWAEFQVPVWRMMLRRWPLWDALTGFLGREGLL 939758 + A ++ T WP +D+I + L L+ E + + + P L E + Sbjct: 176 --RDNAEYAIKPTCWPGLDIIPSCLALHRIETDLMQYHAQ-GKLPHPPHLMLRAAIESVW 232 Query: 939757 RDYDIILLDTPPALGYLTINALAAADILLVPLGASFLEFDSTGRFFDMLYSTFASIEDGE 939578 +YDII++D+ P LG TIN + AADI++V A ++ S +FF ML +++ G Sbjct: 233 DNYDIIVIDSAPNLGTGTINVVCAADIIVVATPAELFDYSSVLQFFTMLLDLLKTVDLG- 291 Query: 939577 NAARRTAGLPEMKFEWDVVRALITRFD---ANQQTDLANVVQAYFGDFMNAYRQDFTALV 939407 FE VVR L+T++ NQ + ++ +G + T V Sbjct: 292 ------------GFE-PVVRLLLTKYSLTTGNQSRWMEEQIRNTWGSMVLRQVVRVTDEV 338 Query: 939406 GQAGEQVNGIYE-ADYRDFNRETYVRGRETFDRTYAEFKEILIGSWWRD 939263 G+ ++ ++E A Y+ + ++ E + LI W + Sbjct: 339 GKGQIKMRTVFEQAAYQRSTLNAWRNAVSIWEPVCQEIFDDLIKPRWEE 387 >ref|NP_046865.1|putative ribonucleotide reductase Length = 693 Score = 87.8 bits (216), Expect = 1e-15 Identities = 110/473 (23%), Positives = 170/473 (35%), Gaps = 63/473 (13%) Frame = -2 Query: 638365 YDFSTIRPRGAEVKGVAADASGP----------------------------------LSF 638288 YD S +R G ++K ASGP L Sbjct: 201 YDVSRVRAAGRKLKTFGGTASGPVPLAKMLTEVSEILSRCAREGEQYRFEDGGALTGLDA 260 Query: 638287 MDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKKDPARLRMFNLSVLVTDAFME 638108 M++ A+ + +++ G RR A MA M +E+F K+D N+SV V DAF Sbjct: 261 MEIDHAIAQCVVAGGVRRSARMAMMHWADWQVETFTNIKQDSGSHWTTNISVEVDDAFWS 320 Query: 638107 AVKADGPWELTFGGKVYRTLQARDLWNRIMRSTYDFAEPGVIFIDRINQMNNLAYCETIS 637928 KA K +R L+A + EPG+ + ++N+ + Sbjct: 321 LAKAPVDPLNPRSTKAHRVLKA------LSEGAVRNGEPGM----WDSSLSNVGEPNEVV 370 Query: 637927 ATNPCGEQPLPPYGACLLGSVNLARLVAKPFSXXXXXXXXXXXXXXXXAVRMMDNVVDAS 637748 TNPCGE L P+ C LG +NLA V +R + V Sbjct: 371 CTNPCGEITLEPWEPCNLGHINLAAFVTDAGKTDYIDLIRAHRLMTRFLIRATFSAVAD- 429 Query: 637747 RFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYGSEEAAARTEAWMKAIARSAYLASA 637568 P+ RRIG+G G+A L + G RY R A+++ +A A Sbjct: 430 ----PKSREVLDRNRRIGVGHLGVASYLALTGRRYSQAPGDKRFTAFLREMA-----AEV 480 Query: 637567 DLAREKGAFPLFEADKYLGSGSLTHMDEDVRAAIRTHGIRNALLTSIAPTGTISLYAGNV 637388 D A E+ ++R + ++APTGTI+ G V Sbjct: 481 DRAAEE-------------------FSHELRIPVPVK------KRTVAPTGTIAKMPG-V 514 Query: 637387 SSGIEPVFAYAYKRKV---------------LQKDGSRTEEEVVDYAVRLW------REQ 637271 S GI P+F+ + R++ DG E++ D + W ++ Sbjct: 515 SEGIHPIFSRYFIRRIRFSVLDNDQFLTASQYAADGYHVEKDQYDKSGNTWVVEIPTKDT 574 Query: 637270 MGDA-------PLPDYFVNAQTLAPLEHVRMQAAAQK-WIDSSISKTINCPED 637136 + +A D +A L + + QA Q W D+++S T N D Sbjct: 575 LVEAVAARFGRDAEDIVESANELTLHQLLAFQALYQTCWADNAVSFTANVDPD 627 >ref|YP_195185.1|ribonucleotide reductase A subunit Length = 776 Score = 86.3 bits (212), Expect = 4e-15 Identities = 91/423 (21%), Positives = 173/423 (40%), Gaps = 58/423 (13%) Frame = -2 Query: 638437 DSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDAMCRT 638258 D++ IF + + Q GIG + IR ++++G +G + F+ ++A R Sbjct: 240 DTLDSIFTSDMAIGKYVAQRAGIGINAGRIRGVNSKIRGGEVKHTGVIPFLKKFEATVRC 299 Query: 638257 IMSAGSRRGAMMATMRCDHPDIESFIEAKKDPA----RLRMFNLSVLVTDAFMEAVKADG 638090 G R G+ H +IE I K + R+R + S+ ++ F E ++G Sbjct: 300 CTQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYERFISNG 359 Query: 638089 PWEL-----------TFGGKVY---------------RTLQARDLWNRIMRSTYDFAEPG 637988 L FG + +T+ A++L+ +++ AE G Sbjct: 360 EISLFSPHDVPGLYDAFGTDRFDELYVGYERDTSVPRKTIGAQELFLDLLKER---AETG 416 Query: 637987 VIFIDRINQMNN-LAYCETISATNPCGEQPLPP-----------YGACLLGSVNLARLVA 637844 +++ I+ N+ ++ + ++ +N C E LP C+L ++N +L Sbjct: 417 RVYVMNIDHCNSHSSFKDKVNMSNLCQEITLPTDPLHQIDGNGEIALCILSAINAGKL-- 474 Query: 637843 KPFSXXXXXXXXXXXXXXXXAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADAL 637664 AVR ++ ++D +P+ + +R +G+G GLA L Sbjct: 475 --------KNLDELEELCDLAVRGLEELIDYQNYPVKAAEVSTKNRRSLGIGYIGLAHYL 526 Query: 637663 LMVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFPLFEADKY----------- 637517 G++Y +A ++ +S ++A+EKGA F+ KY Sbjct: 527 AKQGVKYDDPQAWQLVHELTESFQFYLLKSSNEIAKEKGACGYFDRTKYSDGILPIDTYK 586 Query: 637516 -----LGSGSLTHMDEDVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAY 637352 + L H E +R+ IRT G+R++ L++ P+ + S+ N ++GIEP Y Sbjct: 587 SDVDEIVPNKLNHDWETLRSEIRTFGLRHSTLSAQMPSESSSV-VSNETNGIEPPRDYLS 645 Query: 637351 KRK 637343 +K Sbjct: 646 VKK 648 >ref|NP_918998.1|putative terminase large subunit (amino-end terminase) Length = 203 Score = 84.7 bits (208), Expect = 1e-14 Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 4/193 (2%) Frame = -1 Query: 909353 RVTVTEAAERHMRVPVQGNWVP--FDRAVTPYTVEPADMTQSRRFKAVVFLGPSQSGKSQ 909180 R+TV++AA ++ ++ G +V F+ V PY VEP + SR F A VF+GP+Q GK+ Sbjct: 14 RLTVSQAAAKYRKLNTPGAYVGDWFNETV-PYMVEPMNTLTSRDFDAEVFVGPAQCGKTD 72 Query: 909179 -MMQSVSAHAVTCAPGPVQVIHMTKTDADAWVEEKLDPTILNSPALRERLGTGRD-DSTF 909006 ++ + + V P + + T + A + ++D +SP + + RD D+ F Sbjct: 73 GLLLNFVGYTVKVDPMDMILYCPTNSAARDFSVRRIDRMHRHSPEIGAMMARSRDTDNKF 132 Query: 909005 SRKRFKGMRLTIGYPVPNQLSSRSQRLVMLTDYDHMPQKLGPKDSPEGSPFGMALQRIRT 908826 + G LT+ +P + + R V LTDYD MP + +G PF +A +R T Sbjct: 133 DKHYKDGTILTLSWPSVTEFAGRPIGRVCLTDYDRMPDDV----DGDGEPFDLASKRTTT 188 Query: 908825 FMSRGCVLAETSP 908787 F S LAE P Sbjct: 189 FGSFAMTLAEVQP 201 >ref|NP_918995.1|putative portal protein Length = 553 Score = 84.3 bits (207), Expect = 2e-14 Identities = 102/484 (21%), Positives = 179/484 (36%), Gaps = 70/484 (14%) Frame = -2 Query: 906964 NARARYLVRNNGYAQGALDSWAANTVGTGVKPSSLIAAPARKAALQRLWQDWTDEADAE- 906788 +AR R + N+G+ GA+ + VG + +S+ A + +++ +A+ Sbjct: 60 DARGRDMADNDGFTNGAVGYQRDSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKF 119 Query: 906787 --------------GVTDFYGLQRRIAREFFLTGECFVRLR----ARRP---------GD 906689 ++ F GL R + TGE A RP D Sbjct: 120 ELYAESLACYIDNAAISTFTGLIRLGVVGYVKTGEVLATAEWDRAANRPYATCFQMVSTD 179 Query: 906688 GLTVPLQLQCLPSEMLPIGRTEVLGGGRAIRQGIEFDAVGRRVAYHFHRRHPGDPTEPG- 906512 L+ P Q P+ +R+G+++D GR Y HPGD + Sbjct: 180 RLSNPYQQLDTPT----------------LRRGVQYDKRGRPQGYWIQVAHPGDLYQMAP 223 Query: 906511 ------LAGETVRVPAEDVLHIVDPVESGQLRGVSRFAPAIVKLFLLDQYDDAELDRKKV 906350 ++ V+HI++P E Q RG++ + + + ++ + L + Sbjct: 224 DMYKWKFVQQSKPWGRRQVIHILEPREPDQSRGIADIVSGLKDMRMAKRFKEMSLQNAVI 283 Query: 906349 AAMYAMFITSNDP---------------DAAPLEGELGD------------QVAPGQIVR 906251 A YA I S P D + G+ D Q+ +I Sbjct: 284 NASYAAAIESELPPEFIHSQMSGGSPNADMVGIFGKYMDALKAYVGGANNIQIDGAKIPH 343 Query: 906250 LDPGEDMKVADPADSGATYEPFQYRTLLQVSAALGIPYAHLSQDMVKANYSNARTALMEF 906071 L PG + + G F+ +++A G+ Y ++D KANYS+ + + Sbjct: 344 LFPGTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRDFSKANYSSIQAGIAMT 403 Query: 906070 RRRVEAFQHSVLVYQLCRPVWARFTDLAVLTGAVGLPGYERRRRDY--------LACEWL 905915 RR +E + + +L + + + A+ G V +P + R Y CEW+ Sbjct: 404 RRFLEG-RKKMCADRLATEFFTLWLEEAIAAGEVPMPPGQTRDLFYQPLMKEALSKCEWI 462 Query: 905914 PPKWQWVDPLKDIRAEIEEIGAGLKSRSQAIGERGYDAEEVDRQIAADRKREGRLGLDFR 905735 +D LK+ +A + I AGL + + I G D + Q A + + GL F Sbjct: 463 GASQGQIDQLKETQAAVMRIDAGLSTYEREIARLGGDFRKSFAQRAREDALLKKYGLTFN 522 Query: 905734 RSAQ 905723 SA+ Sbjct: 523 LSAK 526 Score = 62.8 bits (151), Expect = 5e-08 Identities = 53/219 (24%), Positives = 91/219 (41%), Gaps = 8/219 (3%) Frame = +1 Query: 738670 AAMYAMFITSNDPDAAPLEGELGDQVAPGQIVRLDPGEDMKVADPADSGATYEPFQYRTL 738849 A M +F D A + G Q+ +I L PG + + G F+ Sbjct: 311 ADMVGIFGKYMDALKAYVGGANNIQIDGAKIPHLFPGTKLNLKPMGTPGGVGSEFEASLN 370 Query: 738850 LQVSAALGIPYAHLSQDMVKANYSNARTALMEFRRRVEAFQHSVLVYQLCRPVWARFTDL 739029 +++A G+ Y ++D KANYS+ + + RR +E + + +L + + + Sbjct: 371 RHLASAFGMSYEEFTRDFSKANYSSIQAGIAMTRRFLEG-RKKMCADRLATEFFTLWLEE 429 Query: 739030 AVLTGAVRLPGYERRRRDYLA--------CEWLPPKWQWVDPLKDIRAEIEEIGAGLKSR 739185 A+ G V +P + R Y CEW+ +D LK+ +A + I AGL + Sbjct: 430 AIAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQIDQLKETQAAVMRIDAGLSTY 489 Query: 739186 SQAIGERGYDAEEVDRQIAADRKREGRFGLDFRRSGQGS 739302 + I G D + Q A + ++GL F S + S Sbjct: 490 EREIARLGGDFRKSFAQRAREDALLKKYGLTFNLSAKRS 528 >ref|YP_006584.1|putative portal protein Length = 421 Score = 84.0 bits (206), Expect = 2e-14 Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 5/236 (2%) Frame = +3 Query: 759264 MIHLRYMAEDGWTGRSPLEVAAESVGLALAGQEXXXXXXXXXXXXXXIRLRDDY-----E 759428 M H++ + DG+ G SP++ A+ +GL LA +E + R Sbjct: 164 MHHVKVFSLDGYIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSGVIERPKEAPAIKS 223 Query: 759429 DDEXXXXXXXXXXXXXXXPEVEGFPILGEGEDVKTLDMKAADQELLGSRKFDREQIAAIY 759608 ++ + +L EG K + +LL SR++ E++ +Y Sbjct: 224 QEKIDQLLAKWTDRYSGINNMFSVALLQEGMSYKQMSQDNEKAQLLQSRQWGVEEVCRLY 283 Query: 759609 RVPPAKLQMMEYGVKANGEQQAIDYLTDCLLHWAKQVEDQLALGVLTEAERRAGLFFRHD 759788 ++PP +QM+ N E Q + ++ LL W K+ E L +L +ERR L+ + Sbjct: 284 KIPPHMVQMLAKATNNNIEHQGLQFVMYTLLAWLKRHEGALQRDLLLPSERR-DLYIEFN 342 Query: 759789 FGALLRPTTRERYEALAKAVGGPILTPNEARRIDGYDPIEGGDRLNPAPNMTRSEE 759956 LLR + RYE+ A L+ N+ RR++ PI GGD+ NM S + Sbjct: 343 VSGLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLPPIAGGDKYLTPLNMVDSAQ 398 >ref|NP_536414.1|putative PAPS reductase Length = 332 Score = 83.6 bits (205), Expect = 3e-14 Identities = 55/147 (37%), Positives = 66/147 (44%) Frame = +3 Query: 376716 QGMSRVGCAPCINSGKSELTEIGRRFPEAVAKLLEWEALVKEASKRGAATFFAADAIPEG 376895 QGMSRVGC PCIN+GK EL EI RRFPE V ++ EWE LV E + G+ F Sbjct: 230 QGMSRVGCMPCINAGKLELREIARRFPEHVERIAEWERLVSEVCRPGSPVSF-------- 281 Query: 376896 XXXXXXXXXXXXXWVARTHPELDPHGREYKRAMKARMAEISAAAPWPRADELFRWATTDR 377075 H H + A+ W D W+ T R Sbjct: 282 -----------------FHQGTTGHTGQ-------------ASTIWKVVD----WSKTSR 307 Query: 377076 GGRQFSLLERIAADEGLSCSSQYGLCE 377156 GGRQ+ LL A+ +CSS YGLCE Sbjct: 308 GGRQYDLL--ADAEPATACSSAYGLCE 332 >ref|NP_543090.1|putative portal protein Length = 413 Score = 83.2 bits (204), Expect = 3e-14 Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 1/228 (0%) Frame = +3 Query: 759270 HLRYMAEDGWTGRSPLEVAAESVGLALAGQEXXXXXXXXXXXXXXI-RLRDDYEDDEXXX 759446 H+R + DG G +P+ A E++ LA A +E + R D Sbjct: 166 HVRTLTLDGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTEQKLTPDAYER 225 Query: 759447 XXXXXXXXXXXXPEVEGFPILGEGEDVKTLDMKAADQELLGSRKFDREQIAAIYRVPPAK 759626 IL G D K++ + A D + L +RKF E+I ++RVP Sbjct: 226 LKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHM 285 Query: 759627 LQMMEYGVKANGEQQAIDYLTDCLLHWAKQVEDQLALGVLTEAERRAGLFFRHDFGALLR 759806 +Q + N E+ + ++ L+ + ++E ++ G++ E+ ++ + + + GALLR Sbjct: 286 VQNTDRATFNNIEELGLGFINYSLVPYLTRIEQRINTGLVRES-KQGKFYAKFNAGALLR 344 Query: 759807 PTTRERYEALAKAVGGPILTPNEARRIDGYDPIEGGDRLNPAPNMTRS 759950 + R+EA A + I +PN+ R ++ +P GGD NMT S Sbjct: 345 GDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTPMNMTTS 392 >ref|NP_700401.1|Integrase protein Length = 329 Score = 82.4 bits (202), Expect = 6e-14 Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 5/223 (2%) Frame = -3 Query: 735981 FTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRGEFLDWRDRLAQKSKRSADYAFS 735802 + DLA T+K Y+ H + I A FGD +A+ +R + D QKS+ A++ S Sbjct: 74 YADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRR----YMDARGQKSRVQANHEHS 129 Query: 735801 VLARILSWAHDRRKIPVNPCEKPGRLYTGSRADSIWTEAQIAAFLAVAPRPVRLPFLLAI 735622 ++R+ W++ R +P NPC + + + D T+ + A A VR +A Sbjct: 130 SMSRVFRWSYQRGYVPGNPCVGVDK-FPKPQRDRYITDEEYRAIYNNATPAVRAAMEIAY 188 Query: 735621 WTGQRQADILQLTWTAYDGQAIRLRQSKTGRHMLIPVAQPLXXXXXXXXXXXRTLTICET 735442 R +D+L++ W + I ++Q KTG + L + T Sbjct: 189 LCAARVSDVLKMNWNQILEKGIFIQQGKTGVKQIKSWTDRLRDAVEICREWGEEGPVIRT 248 Query: 735441 SRGQPWTSDGFKTSFGKAQASAGIE-----GVTFHDLRGTAVT 735328 G+ ++ GF ++ KA+ +AG + TFHDL+ ++ Sbjct: 249 MYGERYSYKGFNEAWRKARKAAGDDLGRPLDCTFHDLKAKGIS 291 Score = 49.3 bits (116), Expect = 5e-04 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 5/153 (3%) Frame = +1 Query: 922969 TVRDLWAAYLADRKGRPV----ERNMRSSGNAVLPHFGALRPDQITPEACRSYTKARRKT 923136 T LW +LA + +++ + +L FG I PE R Y AR + Sbjct: 60 TFTQLWRKFLASADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRRYMDARGQK 119 Query: 923137 VSVGTVWTELGHLRTCLLWAAKRGLIQVAPHIERPAKPAP-RDRYLTHAEVSRLMEAECE 923313 V E + W+ +RG + P + P P RDRY+T E R + Sbjct: 120 SRVQANH-EHSSMSRVFRWSYQRGYVPGNPCVGVDKFPKPQRDRYITDEEY-RAIYNNAT 177 Query: 923314 PHIKLAITVLLTTAARVGAVLELTWDRVDLERG 923412 P ++ A+ + AARV VL++ W+++ LE+G Sbjct: 178 PAVRAAMEIAYLCAARVSDVLKMNWNQI-LEKG 209 >ref|NP_700377.1|Portal Protein Length = 414 Score = 82.4 bits (202), Expect = 6e-14 Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 2/227 (0%) Frame = +3 Query: 759270 HLRYMAEDGWTGRSPLEVAAESVGLALAGQEXXXXXXXXXXXXXXI-RLRDDYEDDEXXX 759446 H+R + DG G +P+ A E++ LA A +E + R D Sbjct: 167 HVRTLTLDGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTEQTLSDQAYER 226 Query: 759447 XXXXXXXXXXXXPEVEGFPILGEGEDVKTLDMKAADQELLGSRKFDREQIAAIYRVPPAK 759626 IL G D K++ + A D + L +RKF E+I ++RVP Sbjct: 227 LKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHM 286 Query: 759627 LQMMEYGVKANGEQQAIDYLTDCLLHWAKQVEDQLALGVLTEAERRAGLFF-RHDFGALL 759803 +Q + N E+ + ++ L+ + ++E ++ G++ ++++ G+F+ + + GALL Sbjct: 287 VQNTDRATFNNIEELGLGFINYSLVPYLTRIEQRINTGLVRKSKQ--GVFYAKFNAGALL 344 Query: 759804 RPTTRERYEALAKAVGGPILTPNEARRIDGYDPIEGGDRLNPAPNMT 759944 R + R+EA A + I +PN+ R ++ +P GGD NMT Sbjct: 345 RGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTPMNMT 391 >ref|NP_899291.1|Sir2 Length = 246 Score = 80.9 bits (198), Expect = 2e-13 Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 3/179 (1%) Frame = +3 Query: 285198 IFILTGAGISAESGLGTFRDKDGLWTRYDLSRVATPEGFRADPALVHDFYNMRRKNCLDX 285377 IFI +GAG+ AESG+ TFRD +GLW +D+ +V F + L H FYN RR D Sbjct: 3 IFIFSGAGLDAESGISTFRDANGLWENHDIMQVCNINTFLNNYELTHKFYNQRRVQLADV 62 Query: 285378 XXXXXXXXXXRLGRDHPGEVTLVTQNVDDLHERAGSTGVIHMHGELRRALCAACGHRWPA 285557 L + +V T NV DL ERAG V H+HGEL + + Sbjct: 63 HPNAAHYKIAELCEKY--DVDNYTANVSDLLERAGCKDVKHIHGELTKIVQDYTSKDSTV 120 Query: 285558 PERMRSEDACPSCGRPATRPDIVWFGE---MPYRMDEILERLARATLFVVIGSSGEVYP 285725 + +E + R +P +V+F E M + ++ L + + +V+GS+ E+ P Sbjct: 121 IDIGYNEYELRTGRR--DKPGVVFFNEGAPMYTQFWGDIDTLLPSDIAIVVGSTLEINP 177 >ref|NP_050646.1|putative tape measure protein Length = 690 Score = 80.1 bits (196), Expect = 3e-13 Identities = 63/271 (23%), Positives = 117/271 (43%), Gaps = 14/271 (5%) Frame = +1 Query: 419836 FLRPAAEFERFRVQLTNL-EGSAEGADRALRWIEDFATRTPLQLNDTVAAYARLKAFGL- 420009 F+ AA+ E+ + + +L G A + W + A T L+ + K FG+ Sbjct: 86 FIGAAAQREQQIIAMNSLYHGDKVRAQAMMAWAKQNAKDTTWGLSGVLDEIRSSKGFGMT 145 Query: 420010 -DPTKGAMQALVDTMAATGGGAEQLDGLVLALGQAWTKGKLQGEEALQMLERGVPVWDLL 420186 + TK + L D A G G L L Q + + ++ +A + G+ V+ L Sbjct: 146 DEQTKQFITMLQDQGAMHGWDLPTAQGASLQLKQMFARQQITAADANLLTGYGINVYQAL 205 Query: 420187 GAKMGKTAAELQEMASKGQLGRKEIELLIEAMAEKNKGASEGMAKTWDGILSNVLDHWGR 420366 G +++++ +KG+LG K I + ++E++KGA +WDG+ + + + Sbjct: 206 ADATGTDVKKIRDLGTKGKLGMKSILTVFRTLSEQSKGAQASAMNSWDGMFAQMEANLLE 265 Query: 420367 FQRMVMASGVFDFLKGRLQEILGTLNAMAEDGRLQLWADEVARVILRTLEAM-------- 420522 F+ V SG F+ +K ++ +L + + G L A+ + + L T + Sbjct: 266 FRIKVANSGPFEEIKNEMRRVLNWHDMADKSGELDALAENIGQKFLTTFRTVKISAQELW 325 Query: 420523 -WAFAGQAVAAW--NLLVPVVAQAADLLGGW 420606 W G+ AW +V + AA L+ W Sbjct: 326 RWLKPGKDALAWVDQNIVSLKKLAAVLVSVW 356 >ref|NP_817639.1|gp50 Length = 672 Score = 79.7 bits (195), Expect = 4e-13 Identities = 97/369 (26%), Positives = 142/369 (38%), Gaps = 27/369 (7%) Frame = -2 Query: 638365 YDFSTIRPRGAEVKGVAADASGPLSF--------------------------MDVWDAMC 638264 YD S +R GA++K ASGPL M++ A+ Sbjct: 196 YDVSRVRQFGAKLKTFGGTASGPLPLARMLIDVCEILSEIATEGGQLTGIAAMEIDHAIA 255 Query: 638263 RTIMSAGSRRGAMMATMRCDHPDIESFIEAKKDPARLRMFNLSVLVTDAFMEAVKADGPW 638084 + +++ G RR A M+ M P + F+ K+D N+S+ V D F AV Sbjct: 256 QCVVAGGVRRSARMSMMHWKDPQVYEFLRIKQDTGSHWTTNISLEVDDEFWVAV------ 309 Query: 638083 ELTFGGKVYRTLQARDLWNRIMRSTYDFAEPGVIFIDRINQMNNLAYCETISATNPCGEQ 637904 E + G R L R+L ++ + EPG + ++N+ + TNPCGE Sbjct: 310 EEGWAGPNNRIL--RELTEGMVAN----GEPGF----WNSSLSNVGEPNEVVCTNPCGEI 359 Query: 637903 PLPPYGACLLGSVNLARLVAKPFSXXXXXXXXXXXXXXXXAVR-MMDNVVDASRFPLPEQ 637727 L P+ C LG VNLA S +R V D P+ Sbjct: 360 TLEPWEPCNLGHVNLAAFAHGNGSYDITGLYRAHRLVTRFLMRATFSPVAD------PKS 413 Query: 637726 AREAQMKRRIGLGVTGLADALLMVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKG 637547 RRIG+G G+A L + G +Y + ART K + RS LA E Sbjct: 414 REVLDRNRRIGVGHLGVASFLALCGWKY----SEARTNEEFKWLLRS-------LAEEV- 461 Query: 637546 AFPLFEADKYLGSGSLTHMDEDVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPV 637367 + T +R + ++APTGTI+ G VS GI P+ Sbjct: 462 ------------DHAATQFAHQLRIPVPVK------KRTVAPTGTIAKMPG-VSEGIHPI 502 Query: 637366 FAYAYKRKV 637340 F+ + R+V Sbjct: 503 FSRYFIRRV 511 >ref|NP_046923.1|gp28 Length = 387 Score = 79.3 bits (194), Expect = 5e-13 Identities = 86/355 (24%), Positives = 152/355 (42%), Gaps = 4/355 (1%) Frame = -2 Query: 940315 FTLEEVLALRNFFAEEGAAKKEYRPYRPKGLPAKVVAVANFKGGVGKTSTAAHLAMSAAL 940136 +T++++ +R+ F + P V++V + KGGV KTS+A H A AL Sbjct: 82 YTIDQISHMRSVFGNPNQRPDDKNPV--------VLSVMSHKGGVYKTSSAVHQAQWLAL 133 Query: 940135 DGYRVLVIDLDSQGSMTSIMGGRVADEWQTVFPLLAKDYALHVREENEVREAKGEGPLPL 939956 G+RVL+++ + S+ G V D LH+ ++ + P L Sbjct: 134 QGHRVLLVEGNDPQGTASMYHGYVPD--------------LHIHADDTLL------PFYL 173 Query: 939955 DETLTEALKITAADVVQKTHWPNIDLIGAQLNLYWAEFQVPVWRMMLRRWPLWDALTGFL 939776 + + A ++ T WP +D+I + L L+ E + + + P L Sbjct: 174 GK------RDNAEYAIKPTCWPGLDIIPSCLALHRIETDLMQYHSE-GKLPHPPHLMLRA 226 Query: 939775 GREGLLRDYDIILLDTPPALGYLTINALAAADILLVPLGASFLEFDSTGRFFDMLYSTFA 939596 E + +YDII++D+ P LG TIN + AAD+++V A ++ S +FF ML Sbjct: 227 AIESVWDNYDIIVIDSAPNLGTGTINVVCAADVIVVATPAELFDYASVLQFFTMLLDLLE 286 Query: 939595 SIEDGENAARRTAGLPEMKFEWDVVRALITRF---DANQQTDLANVVQAYFGDFMNAYRQ 939425 +++ G FE VVR L+T++ + NQ + ++ +G + Sbjct: 287 TVDLG-------------GFE-PVVRLLLTKYSLTNGNQSRWMEEQIRNTWGAMVLRQVV 332 Query: 939424 DFTALVGQAGEQVNGIYE-ADYRDFNRETYVRGRETFDRTYAEFKEILIGSWWRD 939263 T VG+ ++ ++E A + + E ++ E E LI W D Sbjct: 333 RVTDEVGKGQIKMRTVFEQAANQRSTLNAWRNAVEIWEPVCKEIFEDLIKPRWED 387 >ref|NP_112664.1|INT Length = 485 Score = 79.0 bits (193), Expect = 6e-13 Identities = 84/331 (25%), Positives = 138/331 (41%), Gaps = 16/331 (4%) Frame = -3 Query: 706386 RRAAIYARYST--ELQDGRSIDDQVALCREHAARSGLTVVATYDDRAKTSASIFGRDGLA 706213 ++ AIY R ST + ++G SID+Q+ ++A G V TY D + A + R + Sbjct: 3 KKVAIYTRVSTTNQAEEGFSIDEQIDRLTKYAEAMGWQVSDTYTDAGFSGAKL-ERPAMQ 61 Query: 706212 RMMEQARARQFDVVIVEALDRLSRDQEDLAHIHKRL-SFARIDILTVHEGVADSVSVG-- 706042 R++ + FD V+V LDRLSR D ++ K + + +ID ++++E + S ++G Sbjct: 62 RLINDIENKAFDTVLVYKLDRLSRSVRDTLYLVKDVFTKNKIDFISLNESIDTSSAMGSL 121 Query: 706041 ---LRGLMGTMFLEALKAKTRRGLAGVIRDGRHA--GGQTYGYRGVPGEPGKREIVAHEA 705877 + + E +K + G G + G+ +GY + G EIV +A Sbjct: 122 FLTILSAINEFERENIKERMTMGKLGRAKSGKSMMWTKTAFGYYH-NRKTGILEIVPLQA 180 Query: 705876 EIIREIFAAYVEGKSPRTIAGELNARGIAAPRGPKWNASTLNGNPQRGYGILRNPMYDGR 705697 I+ +IF Y+ G S + +LN G P W+ TL L NP+Y G Sbjct: 181 TIVEQIFTDYLSGISLTKLRDKLNESGHIGKDIP-WSYRTLRQT-------LDNPVYCGY 232 Query: 705696 LVWNRVTMVRDPDTGRRVNRENPLDARQEVEAEHLRIVPRPLFEAAVRRHAQQAEAVRTG 705517 + + E H I+P +E ++ + E + Sbjct: 233 IKFKDSLF----------------------EGMHKPIIP---YETYLKVQKELEERQQQT 267 Query: 705516 KITKAPPRPF------SGLIRCACCGGGMSI 705442 PRPF SG+ RC CG + I Sbjct: 268 YERNNNPRPFQAKYMLSGMARCGYCGAPLKI 298 Score = 55.1 bits (131), Expect = 1e-05 Identities = 65/279 (23%), Positives = 123/279 (44%), Gaps = 3/279 (1%) Frame = +2 Query: 9806 YVRMSTDHQK---YSTENQLDVIRSYAAARGLQILRVFEDSGRSGLRLDGREALQNLMGE 9976 Y R+ST +Q +S + Q+D + YA A G Q+ + D+G SG +L+ R A+Q L+ + Sbjct: 8 YTRVSTTNQAEEGFSIDEQIDRLTKYAEAMGWQVSDTYTDAGFSGAKLE-RPAMQRLIND 66 Query: 9977 VQSGRADFKAILVYDVSRWGRFQDADEGAYHEHVCSRAGIRVHYCGEQFENDGSIGSNLL 10156 +++ F +LVY + R R D + V ++ I E + ++GS L Sbjct: 67 IEN--KAFDTVLVYKLDRLSR-SVRDTLYLVKDVFTKNKIDFISLNESIDTSSAMGSLFL 123 Query: 10157 KTVKRVMAGEYSRELSVKVFAGQCRLVELGYRQGGAAGYGLRRVLIDEHGSPKGELSRGE 10336 + + E+ RE ++K + + +LG + G + + H G L Sbjct: 124 TILSAI--NEFERE-NIK---ERMTMGKLGRAKSGKSMMWTKTAFGYYHNRKTGILE--- 174 Query: 10337 QKSLQTDRVILVPGPEEEQRVVQRMYAMFVDEGRPEREIAKILNADGHRTDLDRPWTRAT 10516 +VP + +V++++ ++ G ++ LN GH D PW+ T Sbjct: 175 ----------IVP---LQATIVEQIFTDYL-SGISLTKLRDKLNESGH-IGKDIPWSYRT 219 Query: 10517 VHQVLTSEKYIGNNVFAKVSFKLKQRRVVNPREMWIRAE 10633 + Q L + Y G F F+ + ++ P E +++ + Sbjct: 220 LRQTLDNPVYCGYIKFKDSLFEGMHKPII-PYETYLKVQ 257 >ref|NP_852555.1|Site-specific recombinase Length = 490 Score = 79.0 bits (193), Expect = 6e-13 Identities = 72/297 (24%), Positives = 135/297 (45%), Gaps = 7/297 (2%) Frame = +2 Query: 9806 YVRMSTDH--QKYSTENQLDVIRSYAAARGLQILR--VFEDSGRSGLRLDGREALQNLMG 9973 YVR+STD Q S ENQ+D+ R + G + +++D SG R A+Q ++ Sbjct: 9 YVRVSTDRDEQVSSIENQIDICRYWIEKNGYEWDENSIYKDEAVSGTAWLERHAMQLILE 68 Query: 9974 EVQSGRADFKAILVYDVSRWGRFQDADEGAYHEHVCSRAGIRVHYCGEQFENDGSIGSNL 10153 +V+ R + ++ + R GR D + + + G+R+ E +++ ++L Sbjct: 69 KVR--RKELDTVVFKSIHRLGR--DLRDALEIKEILLGHGVRLVTIEEGYDSYYEGKNDL 124 Query: 10154 LKTVKRVMAGEYSRELSVKVFAGQCRLVELGYRQGGAAGYGLRRVLIDEHGSPKGELSRG 10333 + + A + + +SV V A V G GG YG + V Sbjct: 125 KFEMYAMFASQLPKTVSVSVSAALAAKVRRGEYTGGIVPYGYKIV--------------- 169 Query: 10334 EQKSLQTDRVILVPGPEEEQRVVQRMYAMFVDEGRPEREIAKILNADGHRTDLDRPWTRA 10513 +QK EEE +V++MY ++ D G +IA +N G + + W Sbjct: 170 DQKYTIN---------EEEAELVRKMYELY-DNGLGYMKIADAINDMGVPSRTGKLWAYP 219 Query: 10514 TVHQVLTSEKYIGNNV---FAKVSFKLKQRRVVNPREMWIRAEGAYPAIVDQALFLR 10675 ++ ++T+ Y G+ + +A+V +++ ++NP+E W+ E +PAI+ + L+ R Sbjct: 220 SIRAIITNAAYKGDYIMQKYAEVKVDGRKKMIINPKEKWVVFENHHPAIITRDLWDR 276 >ref|NP_052288.1|hypothetical protein Length = 334 Score = 78.2 bits (191), Expect = 1e-12 Identities = 58/149 (38%), Positives = 74/149 (49%), Gaps = 2/149 (1%) Frame = +3 Query: 376716 QGMSRVGCAPCINSGKSELTEIGRRFPEAVAKLLEWEALVKEASKRGAATFFAADAIPEG 376895 QG SRVGC PCI++ KSEL EI R+PE +A++ EWE LV S+RG +TFF + Sbjct: 223 QGCSRVGCMPCIHARKSELAEIFARWPEEIARVAEWERLVAACSRRGNSTFFPS------ 276 Query: 376896 XXXXXXXXXXXXXWVARTHPELDPHGREYKRAMKARMAEISAAAPWPRADELFR-WATTD 377072 TH DP R KR + E A+ +R WA T Sbjct: 277 -----------------TH---DPR-RAEKRIEVVTVEEYGIAS--------YRDWAMTT 307 Query: 377073 RGGRQFSLLERIAADEGLSCSSQY-GLCE 377156 RGG Q+ LL A ++ CSS Y G+CE Sbjct: 308 RGGSQYDLL--AATNDKTVCSSVYAGVCE 334 >ref|NP_599035.1|portal protein Length = 424 Score = 77.0 bits (188), Expect = 2e-12 Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 2/222 (0%) Frame = +3 Query: 759264 MIHLRYMAEDGWTGRSPLEVAAESVGLALAGQEXXXXXXXXXXXXXXI-RLRDDYEDDEX 759440 MIH+R + + G SP+ AE++G+ ++GQ+ I ++ + Sbjct: 178 MIHIRALGNNQKMGLSPIMQHAETIGMGMSGQKYTESFFSGNARPAGIVSVKSGLNKESW 237 Query: 759441 XXXXXXXXXXXXXXPEVEGFPILGEGE-DVKTLDMKAADQELLGSRKFDREQIAAIYRVP 759617 E +L + D K L + D +++ K +R IA I+ +P Sbjct: 238 GWLKDQWQKASQALRRQENKTMLLPADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIP 297 Query: 759618 PAKLQMMEYGVKANGEQQAIDYLTDCLLHWAKQVEDQLALGVLTEAERRAGLFFRHDFGA 759797 + +E +N QAI ++ ++ W E +L + T AE AG + R + Sbjct: 298 AHMINDLEKATFSNISAQAIQFVRYTMMPWVTNWEQELNRRLFTRAELAAGYYVRFNLTG 357 Query: 759798 LLRPTTRERYEALAKAVGGPILTPNEARRIDGYDPIEGGDRL 759923 LLR T +ER + A+ ++ NEAR + +P+EG D + Sbjct: 358 LLRGTPQERAQFYHFAITDGWMSRNEARAFEDMNPVEGLDEM 399 >ref|NP_817764.1|gp3 Length = 235 Score = 76.6 bits (187), Expect = 3e-12 Identities = 67/210 (31%), Positives = 96/210 (45%), Gaps = 10/210 (4%) Frame = +3 Query: 750231 LLMASGGLDSTTVAYWLTERGV--QFIPVFFDYGQ-HCVETEWETLKEVLPASAAHPERN 750401 L++ SGG+DS+T+ W +R Q +F DYGQ H VE L V A Sbjct: 8 LVLLSGGMDSSTLLAWALDRPDVDQASALFVDYGQRHVVERASSQL--VAQHYGAAWSEL 65 Query: 750402 DISDLFRGSKSRLITEA-DLWNEEVKDEDLY---VPYRTLLFYSAAAARAQTLGAFEVYT 750569 D+ S L A ++ + ++++ VP R SAAA A +LG V T Sbjct: 66 DLRAFGASVNSALTVMAREVPHGHYAEDNMVQTVVPNRNATLISAAAGIAASLGHDAVLT 125 Query: 750570 GFINSNRAKEIDCTAEFMNKLDALTDSVGPVRFLSPFRFWSKSEVAKESIRLGVPIGRTF 750749 + A DC EF+ +D T + V ++PF+ K+++A+ +LGVP T+ Sbjct: 126 AVHVGDHAVYPDCRPEFVAAIDMATFAGCGVHVVAPFQTGDKADIARLGGQLGVPYHLTW 185 Query: 750750 SCQAASL---MPCGACPNCVERLAALRETG 750830 SC L CG C CVER A E G Sbjct: 186 SCYEGGLNDARHCGRCGTCVERAEAFAEAG 215 >ref|NP_490623.1|hypothetical protein Length = 108 Score = 76.6 bits (187), Expect = 3e-12 Identities = 35/74 (47%), Positives = 47/74 (63%) Frame = +2 Query: 419156 QPLKRASGDIASVTVRKPDVGSLRGLKLTDILQMDVTALSRLLPRITEPALLPDEVAALD 419335 QP+KR + I S+T+RKP G LRGL L D+LQ DV A ++LPRI++P + E +D Sbjct: 22 QPIKRGAQSIESLTLRKPSSGELRGLHLLDLLQFDVAATIKILPRISQPTITEPEATGMD 81 Query: 419336 PADFLGLSAAVVGF 419377 PAD L + GF Sbjct: 82 PADLLACGQVIAGF 95 >ref|NP_858954.1|head portal protein Length = 432 Score = 76.3 bits (186), Expect = 4e-12 Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 3/140 (2%) Frame = +3 Query: 759501 PILGEGEDVKTLDMKAADQELLGSRKFDREQIAAIYRVPPAKLQMMEYGVKANG---EQQ 759671 P+L G DVK+L + D +LL SR++ E I + VPP+ + G + G E Q Sbjct: 255 PLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQ 314 Query: 759672 AIDYLTDCLLHWAKQVEDQLALGVLTEAERRAGLFFRHDFGALLRPTTRERYEALAKAVG 759851 + +L+ L W +++E +AL +L+ AERR F D ALLR + R ++ V Sbjct: 315 QLGFLSMTLSPWLRRIEQSIALNLLSPAERRR-YFADFDTSALLRADSAARSSYYSQLVN 373 Query: 759852 GPILTPNEARRIDGYDPIEG 759911 ++T +EAR I+G + G Sbjct: 374 NGLMTRDEAREIEGLPKLGG 393 >ref|NP_690758.1|ORF25 Length = 416 Score = 76.3 bits (186), Expect = 4e-12 Identities = 50/219 (22%), Positives = 102/219 (46%) Frame = +3 Query: 759264 MIHLRYMAEDGWTGRSPLEVAAESVGLALAGQEXXXXXXXXXXXXXXIRLRDDYEDDEXX 759443 ++H + ++ DG G+SP+ V E +G A + I + D++ Sbjct: 167 VLHFKGLSTDGIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILKVPAFLDEKPK 226 Query: 759444 XXXXXXXXXXXXXPEVEGFPILGEGEDVKTLDMKAADQELLGSRKFDREQIAAIYRVPPA 759623 +VE I+ G + +++ M + + + S KF++ QI+ IY+VP Sbjct: 227 ENVRKEWKRVN---KVENIAIIDYGLEYQSISMPLQEAQFVESMKFNKAQISMIYKVPLH 283 Query: 759624 KLQMMEYGVKANGEQQAIDYLTDCLLHWAKQVEDQLALGVLTEAERRAGLFFRHDFGALL 759803 KL ++ +N E Q+I+Y+ + L W E +L + + + ++++G + + + + L Sbjct: 284 KLNELDKATFSNIEHQSIEYVRNTLQPWIVNFEQELNVKLFLDHDQKSGHYVKFNIDSEL 343 Query: 759804 RPTTRERYEALAKAVGGPILTPNEARRIDGYDPIEGGDR 759920 R ++ + E L +L +E R + +PIE GD+ Sbjct: 344 RGDSKTQAEYLKTLHETGVLNKDEIRELLERNPIENGDK 382 >ref|YP_024720.1|gp47 Length = 401 Score = 75.9 bits (185), Expect = 5e-12 Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 3/175 (1%) Frame = +3 Query: 422538 PAFRLTVDGEDATGAVADRLLSLVITDEDGTKADRLEIELDDRDGRLA---FPDTEARIE 422708 P F L + ++ T +A +LS+ TD ++D +E+ L+D DGR +P + Sbjct: 17 PVFTLVYEQKNITNDIAPYVLSVAYTDFLSGQSDEIEVVLEDTDGRWLDAWYPGKGDALT 76 Query: 422709 VALGFAGQPLAAMGVFAVDGVAGSGPRQSLRITATAADLKGEIRSPRTRAWRNRSLRDIV 422888 + +G+AG PL A G F +D + P ++ I +K +RS + +A+ + +L I Sbjct: 77 LKIGYAGAPLLACGRFEIDEIGFDEPPSTVTIRGLGTGVKASVRSRKAKAYEHTTLATIA 136 Query: 422889 ATVAAEAGLRPVVGESVAGTAWDYLAQTAESNLHFLTRIAATLDATAKPAGGALV 423053 A VA L + + D + Q E ++ FLTR+A K +G L+ Sbjct: 137 ARVAKRNHL--TLTGRIRDIRIDRVTQYQEQDVAFLTRLAREYGYAFKISGSKLI 189 >ref|NP_150145.1|putative DNA methylase Length = 385 Score = 75.5 bits (184), Expect = 7e-12 Identities = 96/375 (25%), Positives = 150/375 (40%), Gaps = 23/375 (6%) Frame = -1 Query: 887078 EQAGFDVAAAVEIDPVHCAVHKFNFPDTAVIP-RSVVGLTAEEIRESAGIGNRPIDCVFG 886902 E AG + EID A +K I + ++ + IR GIG+ +D + G Sbjct: 18 ESAGHECIGFCEIDKFARASYKAIHDTKGEIELHDITTVSDDTIR---GIGH--VDVICG 72 Query: 886901 GPPCQGFSLIGHR-ALEDPRNSXXXXXXXXXXXLDARTFVFENVKGLTVGSHRTFLSELV 886725 G PCQ FS+ G+R ED R + L R ENVKGL ++ Sbjct: 73 GFPCQAFSIAGNRRGFEDTRGTLFFEIARFASILKPRYLFLENVKGLLNHDRGNTFEVIL 132 Query: 886724 AAFGMAGYDVRLPWKVLDAADYGTPQHRQRLFLIGAKRGETLPEIPPPQTNAA--DARKP 886551 +A GYDV W+VL++ ++G PQ+R+R+F+IG RG + ++ P + A +P Sbjct: 133 SALDELGYDVE--WQVLNSKNFGVPQNRERVFIIGHLRGGSGRKVFPLSGDGAAITCEQP 190 Query: 886550 LAHLPGGPTVRDAIE--DLPDADRFA-----SLVESDAVRTSAMGEPSTYAAELRCLNND 886392 + G + + D+ D A + + D ++ E + N Sbjct: 191 KINKVGNTRKKGKSQSGDVVSIDSLAPTLCSTTTQKDPLKVLIENEIKQFGVLQPNYNQS 250 Query: 886391 AWHYGYPRNWTPTWMTSSA-----RTAHSEISRRRFQETPQGAVEPISRFYKLAPGGLCN 886227 Y +PT + E +++ +QE G +S P Sbjct: 251 GVVYEID-GISPTIRAYQGGNLEPKIRVKEATKQGYQEAEIGDSVNLSH-----PNSKTR 304 Query: 886226 TLRAGTDGARGAFT--SPRPIHYEYN-RCITVREMARLHGFPDWFRLHATKWHGG----R 886068 R G A T S + ++ R +T RE RL GFPDW A + + + Sbjct: 305 RGRVGKQIANTLLTGESQGVVEPDFRIRKLTPRECWRLQGFPDWAFDKAQEVNSNSQLYK 364 Query: 886067 QVGNSVPPPLARAVA 886023 Q GNSV + A+A Sbjct: 365 QAGNSVTVNVISAIA 379 >ref|NP_891805.1|aerobic NDP reductase large subunit Length = 747 Score = 75.5 bits (184), Expect = 7e-12 Identities = 104/422 (24%), Positives = 168/422 (39%), Gaps = 56/422 (13%) Frame = -2 Query: 638467 FNCFVMGTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSF 638288 F+ V+ DS+ GI + + + GIG + IR G+++ +G + F Sbjct: 218 FSSCVVIESDDSLQGINETANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPF 277 Query: 638287 MDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKKDPA----RLRMFNLSVLVTD 638120 + ++ G R GA H + ES I K + R+R + V + + Sbjct: 278 WKHFQTAVKSCSQGGIRGGAATLYYPMWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINN 337 Query: 638119 AFMEA-VKAD-----GP-------WELTFGG-----KVYRTLQ-----------ARDLWN 638027 +E +K D P W+L F ++Y L+ A DL+ Sbjct: 338 LMVERFLKRDYITLFSPDVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTRVKAEDLFL 397 Query: 638026 RIMRSTYDFAEPGVIFIDRINQ----MNNLAYCETISATNPCGEQPLP--PYGACLLGSV 637865 + ++ F D +N + N+A I +N C E LP P G + Sbjct: 398 AVAIERFNTGRIYPTFTDNMNNHGAFIRNVA---PIKQSNLCCEIALPTKPMGRD-DSEI 453 Query: 637864 NLARLVAKPFSXXXXXXXXXXXXXXXXAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGV 637685 +L L A VR +DN++D +P+ EQA A+ +R +G+GV Sbjct: 454 SLCTLAAYVLGNFDIENMEEVERIAMVMVRALDNLLDYQDYPV-EQALTAKKRRSLGVGV 512 Query: 637684 TGLADALLMVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFPLFEADKYLGSG 637505 T A L Y E+A T + + + AS LA+EKGA L +Y G G Sbjct: 513 TNFASYLADNFFTY--EDANEFTHKTFERLQYALIKASVQLAKEKGACELMHETRY-GRG 569 Query: 637504 SLT----------------HMD-EDVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGI 637376 L MD E++R ++ +GIRN+ L+++ P + S N ++GI Sbjct: 570 ELPIDWYKKTVDELVDPVYEMDWEELRKDLKKYGIRNSTLSALMPCES-SSQVSNSTNGI 628 Query: 637375 EP 637370 EP Sbjct: 629 EP 630 >ref|NP_852723.1|putative integrase Length = 348 Score = 75.5 bits (184), Expect = 7e-12 Identities = 64/232 (27%), Positives = 107/232 (46%), Gaps = 2/232 (0%) Frame = +1 Query: 923113 YTKARRKTVSVGTVWTELGHLRTCLLWAAKRGLIQVAPHIERPAKPAPRDRYLTHAEVSR 923292 Y KA+ + V T+ L +R L A + + P I+ +P R R+LT E R Sbjct: 113 YEKAK-EGVKARTINAVLQQIRVILRAAVEWDWLDKCPAIKFLPEPKRRVRWLTQHEEIR 171 Query: 923293 LMEAECEPHIKLAITVLLTTAARVGAVLELTWDRVDLERGQIRLRVEAEGPRKGRAT-VP 923469 L+E E H+K + + T R+ + +L W ++DL + Q + +E + G + VP Sbjct: 172 LIE-ELPEHLKPIVQFAILTGLRMSNITQLKWSQIDLSKRQAW--INSEQSKTGNSIGVP 228 Query: 923470 INNXXXXXXXXXXXXXXXDHVIEWAGGPVKCIR-KGFLRAVSNAGLLDVTLHTLRHTAAV 923646 +N+ ++V + G PV+ K F A+ AG+ D H LRHT A Sbjct: 229 LNDKAIEVIVSQFGKHK-ENVFTYKGKPVRIANTKAFRAALQRAGIKDFRFHDLRHTWAT 287 Query: 923647 HMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAADALEFGALRVVK 923802 +G P+ + Q LG + T YA S +HL+ A+ ++ A ++ + Sbjct: 288 RHIMSGTPL-YVLQELGGWSKSDTVRKYAHLSVEHLQNHANNVQLFATKLAQ 338 Score = 40.4 bits (93), Expect = 0.25 Identities = 40/126 (31%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Frame = -3 Query: 735627 AIWTGQRQADILQLTWTAYD---GQA-IRLRQSKTGRHMLIPVAQPLXXXXXXXXXXXRT 735460 AI TG R ++I QL W+ D QA I QSKTG + +P+ + Sbjct: 187 AILTGLRMSNITQLKWSQIDLSKRQAWINSEQSKTGNSIGVPLNDKAIEVIVSQFGKHKE 246 Query: 735459 LTICETSRGQPWTSDGFKTSFGKAQASAGIEGVTFHDLRGTAVTFLALAGCSVPEIAALT 735280 T +G+P K +F A AGI+ FHDLR T T ++G + + L Sbjct: 247 NVF--TYKGKPVRIANTK-AFRAALQRAGIKDFRFHDLRHTWATRHIMSGTPLYVLQELG 303 Query: 735279 GHSLKD 735262 G S D Sbjct: 304 GWSKSD 309 >ref|NP_061531.1|integrase Length = 369 Score = 74.7 bits (182), Expect = 1e-11 Identities = 68/217 (31%), Positives = 92/217 (42%), Gaps = 12/217 (5%) Frame = +1 Query: 923164 LGHLRTCLLWAAKRGLIQVAPHIERPAKPAP-RDRYLTHAEVSRLMEA----ECEPHIKL 923328 + H T L WA P R + A RDR+LT AEV L A + P ++ Sbjct: 133 INHCNTELEWALPN------PVKGRKMREAEGRDRWLTRAEVEALCRAARGQKFGPMLED 186 Query: 923329 AITVLLTTAARVGAVLELTWDRVDLERGQIRLRVEAEGPRKG-RATVPINNXXXXXXXXX 923505 I + + T R +L L W RVD I L EA + G R ++PIN Sbjct: 187 FIRLAVNTGCRREEMLGLEWRRVDFANRLIYL--EASHTKAGKRRSIPINEGAMAALKRR 244 Query: 923506 XXXXXXDHV-IEWA-----GGPVKCIRKGFLRAVSNAGLLDVTLHTLRHTAAVHMAEAGV 923667 W G V + GF +A A + D T+H LRHT A + AGV Sbjct: 245 MAFRSETSPECPWVFARANGDRVISLSAGFKQACQAAKIADFTIHDLRHTCAAWLVSAGV 304 Query: 923668 PMDEISQYLGHSNVQITSSVYARFSPQHLRKAADALE 923778 P+ ++ LGHS V +T YA +P +R A L+ Sbjct: 305 PLADVRDLLGHSTVAMTER-YAHLAPARVRDAVGVLD 340 Score = 43.1 bits (100), Expect = 0.038 Identities = 50/182 (27%), Positives = 72/182 (39%), Gaps = 27/182 (14%) Frame = -3 Query: 735630 LAIWTGQRQADILQLTWTAYD--GQAIRLRQS--KTGRHMLIPVAQPLXXXXXXXXXXXR 735463 LA+ TG R+ ++L L W D + I L S K G+ IP+ + Sbjct: 190 LAVNTGCRREEMLGLEWRRVDFANRLIYLEASHTKAGKRRSIPINEGAMAALKRRMAFRS 249 Query: 735462 TLTICETSRGQPWT---SDG-----FKTSFGKAQASAGIEGVTFHDLRGTAVTFLALAGC 735307 ETS PW ++G F +A +A I T HDLR T +L AG Sbjct: 250 -----ETSPECPWVFARANGDRVISLSAGFKQACQAAKIADFTIHDLRHTCAAWLVSAGV 304 Query: 735306 SVPEIAALTGHS---------------LKDAEGILSKHYLGRDRRLGESAVAKLEKHGVG 735172 + ++ L GHS ++DA G+L + R+ R+ S A H G Sbjct: 305 PLADVRDLLGHSTVAMTERYAHLAPARVRDAVGVLDQ---VREGRISRSVHADNPAHLHG 361 Query: 735171 TP 735166 P Sbjct: 362 GP 363 Score = 41.6 bits (96), Expect = 0.11 Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 11/248 (4%) Frame = +3 Query: 374076 RIKAFRNFIEVVGDKALEDLVPDDMLDFMAWWEDRLETEGLTPNSANKDLAHIGSTLREV 374255 RIK R + + + DL D+ + A RL+ G +P + N++LA + + + Sbjct: 84 RIKPLREYF---AGRVVNDLGGQDIRGYGA---HRLDA-GASPATINRELAALSAAINHC 136 Query: 374256 IKKKRLPINPPLSGYALPEGEKRKRLPWSDDWIRDKLLAPGALAGLNSEARAIMLIMLNT 374435 + + P+ G + E E R R W + L + + +NT Sbjct: 137 NTELEWALPNPVKGRKMREAEGRDR--WLTRAEVEALCRAARGQKFGPMLEDFIRLAVNT 194 Query: 374436 GARPSELQALTSSRIVLDADVPHISIEGEARTLKSPRARRKIPLTGVSLEAARRH----- 374600 G R E+ L R+ D + I EA K+ + RR IP+ ++ A +R Sbjct: 195 GCRREEMLGLEWRRV----DFANRLIYLEASHTKAGK-RRSIPINEGAMAALKRRMAFRS 249 Query: 374601 ------PEGFPRYQDNPALSATVNKFLRENGLTESPKHTLYGFRHSFEDRCLAAGIDERI 374762 P F R + +S + F + + T++ RH+ ++AG+ Sbjct: 250 ETSPECPWVFARANGDRVISLSAG-FKQACQAAKIADFTIHDLRHTCAAWLVSAGVPLAD 308 Query: 374763 RRDLLGHA 374786 RDLLGH+ Sbjct: 309 VRDLLGHS 316 >ref|NP_046614.1|histone-like prokaryotic DNA-binding protein family Length = 92 Score = 74.3 bits (181), Expect = 2e-11 Identities = 39/90 (43%), Positives = 56/90 (62%) Frame = -2 Query: 681523 SELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARVGRN 681344 +ELI K+A E ++++ V VF+ I EAL G++V + GFG F V+ R AR GRN Sbjct: 4 TELIAKVA-EKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKGRN 62 Query: 681343 PRTGEAVEVEDKKVPFFKTGKLLRDRLNAK 681254 P+TGE +++ K P FK K L+D + AK Sbjct: 63 PQTGEEIDIPATKAPAFKPAKALKDAVKAK 92 >ref|YP_006537.1|Dmt Length = 754 Score = 73.6 bits (179), Expect = 3e-11 Identities = 83/276 (30%), Positives = 120/276 (43%), Gaps = 26/276 (9%) Frame = -1 Query: 890030 KQVPPAAP----VAPWLGGKKRLHPLILERI-EAIPH-RAYVEPFVGMGGIFLRRRFRPR 889869 ++V PAA + W GGK +LE+I +P + +EPFVG G +F ++ Sbjct: 478 RKVKPAAEFERSIFKWAGGKFG----VLEQIFRYLPEGKRLIEPFVGGGAVFTNAGYQEN 533 Query: 889868 LEVMNDRNGEIINLFRILQRHYPQLLEIMR--FQICSRRE--FDRLRLTDPATLTDLERA 889701 L +ND N ++IN ++ LQR L+ + FQ + +E + DL RA Sbjct: 534 L--LNDVNADLINFYKTLQREAHSLITLAHRFFQDYNTQEGYLAVRNAFNKQVYDDLHRA 591 Query: 889700 ARFLYLQRLSFGG----KPNGSFGISPG--NGPLFSLARLEPLLDAARTRLDGVVFECLD 889539 A FL+L R F G G F + G P F L +E L A F C D Sbjct: 592 AAFLFLNRHCFNGLTRYNQAGEFNVGYGKYKTPYFPLQEMEAFLGAEGRS----EFVCGD 647 Query: 889538 WADLIPRYDTAETLFYLDPPY-----FGGENDYGKGLFDRAQFARIAEIL--GSLKGAFL 889380 +A +I + +F DPPY G +Y F + R+ +L +GA + Sbjct: 648 FAAVIEAAGEGDVIF-CDPPYEPLPNTEGFTNYSGHDFKFEEQKRLVSLLTDAHRRGAKV 706 Query: 889379 LSIND-TPEIRALF--GRFHLEPVRLNYSVSAAGST 889281 L N P IR L+ F +EP+ SVS G T Sbjct: 707 LITNSGAPNIRELYHDSGFRVEPLFARRSVSCKGDT 742 Score = 67.0 bits (162), Expect = 2e-09 Identities = 83/276 (30%), Positives = 119/276 (43%), Gaps = 26/276 (9%) Frame = +1 Query: 744388 KQVPPAAP----VAPWLGGKKRLHPLILERI-EAIPH-RAYVEPFVGMGGIFLRRRFRPR 744549 ++V PAA + W GGK +LE+I +P + +EPFVG G +F ++ Sbjct: 478 RKVKPAAEFERSIFKWAGGKFG----VLEQIFRYLPEGKRLIEPFVGGGAVFTNAGYQEN 533 Query: 744550 LEVMNDRNGEIINLFRILQRHYPQLLEIMR--FQICSRRE--FDRLRLTDPATLTDLERA 744717 L +ND N ++IN ++ LQR L+ + FQ + +E + DL RA Sbjct: 534 L--LNDVNADLINFYKTLQREAHSLITLAHRFFQDYNTQEGYLAVRNAFNKQVYDDLHRA 591 Query: 744718 ARFLYLQRLSFGG----KLDGVFGVSAG--HGPRFSLARLEPVLDAAHERLDGVVFESLD 744879 A FL+L R F G G F V G P F L +E L A F D Sbjct: 592 AAFLFLNRHCFNGLTRYNQAGEFNVGYGKYKTPYFPLQEMEAFLGAEGRS----EFVCGD 647 Query: 744880 WADLIPRYDTTETLFYLDPPY-----FGGENDYGKGLFDRAQFARIAEIL--GGLKGAFL 745038 +A +I + +F DPPY G +Y F + R+ +L +GA + Sbjct: 648 FAAVIEAAGEGDVIF-CDPPYEPLPNTEGFTNYSGHDFKFEEQKRLVSLLTDAHRRGAKV 706 Query: 745039 LSIND-TPEIRALF--GRFHLEPVRLSYSVSASGGT 745137 L N P IR L+ F +EP+ SVS G T Sbjct: 707 LITNSGAPNIRELYHDSGFRVEPLFARRSVSCKGDT 742 Score = 52.4 bits (124), Expect = 6e-05 Identities = 68/268 (25%), Positives = 100/268 (37%), Gaps = 20/268 (7%) Frame = +2 Query: 423698 WIGGKRNLARRICAILDRSPCLTYAEPFVGMAGIFLRRSSRPRAEVINDRGRDVANLFRI 423877 W GGK + +I L L EPFVG +F + ++ND D+ N ++ Sbjct: 493 WAGGKFGVLEQIFRYLPEGKRLI--EPFVGGGAVFTNAGYQEN--LLNDVNADLINFYKT 548 Query: 423878 LQRHYPQFLDTLRFQL-----TTRAEFERLGATDPDTLTDLERAARFLYLQRTAFGG--- 424033 LQR + TL + T A + DL RAA FL+L R F G Sbjct: 549 LQREAHSLI-TLAHRFFQDYNTQEGYLAVRNAFNKQVYDDLHRAAAFLFLNRHCFNGLTR 607 Query: 424034 --KVSGRNFGVSSHRPGRFNLTTLEPMLEDLHSRLAGVIVECLDWADFLARYDRPETLFY 424207 + N G ++ F L +E L R V C D+A + + +F Sbjct: 608 YNQAGEFNVGYGKYKTPYFPLQEMEAFL-GAEGRSEFV---CGDFAAVIEAAGEGDVIF- 662 Query: 424208 LDPPYWGSETDYGRGLFQREDFGLMAE-RLAKL-------QGRFLLSINDVPQIRAIF-- 424357 DPPY G + DF + RL L + L++ + P IR ++ Sbjct: 663 CDPPYEPLPNTEGFTNYSGHDFKFEEQKRLVSLLTDAHRRGAKVLITNSGAPNIRELYHD 722 Query: 424358 GRFRITEVTTTYSISGSAKGNGTARPEL 424441 FR+ + S+S G A L Sbjct: 723 SGFRVEPLFARRSVSCKGDTRGVAHDVL 750 >ref|NP_536360.1|putative portal protein Length = 419 Score = 73.6 bits (179), Expect = 3e-11 Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 8/224 (3%) Frame = +3 Query: 759270 HLRYMAEDGWTGRSPLEVAAESVGLALAGQEXXXXXXXXXXXXXXI--------RLRDDY 759425 H+R+M+ +G+TG SP+ + A ++G A A Q+ + L+D Sbjct: 163 HVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPKDAPALKDQA 222 Query: 759426 EDDEXXXXXXXXXXXXXXXPEVEGFPILGEGEDVKTLDMKAADQELLGSRKFDREQIAAI 759605 D +V +L EG + L M D L+ + + IA I Sbjct: 223 SVDRITDGWNAKFGGSGNAKKVA---LLQEGMTFRPLSMTNVDAALIDALRLSALDIARI 279 Query: 759606 YRVPPAKLQMMEYGVKANGEQQAIDYLTDCLLHWAKQVEDQLALGVLTEAERRAGLFFRH 759785 Y++P + +E +N E Q++ ++ LL W K+ E +L +ER+ F + Sbjct: 280 YKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQ-YFIEY 338 Query: 759786 DFGALLRPTTRERYEALAKAVGGPILTPNEARRIDGYDPIEGGD 759917 + LLR RY A A L+ N+ RR++ P++GGD Sbjct: 339 NLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGD 382 >ref|NP_878240.1|Mth Length = 312 Score = 72.4 bits (176), Expect = 6e-11 Identities = 95/357 (26%), Positives = 137/357 (38%), Gaps = 4/357 (1%) Frame = -1 Query: 887072 AGFDVAAAVEIDPVHCAVHKFNFPDTAVIPRSVVGLTAEEIRESAGIGNRPIDCVFGGPP 886893 AGF+V A +I P V+ N P+T I + GL + E + G P Sbjct: 21 AGFNVLMANDILPYARDVYLENHPETDYILGDISGLQSFPSAE----------LLIGCYP 70 Query: 886892 CQGFSLIGHRALEDPRNSXXXXXXXXXXXLDARTFVFENVKGLTVGSHRTFLSELVAAFG 886713 CQGFS G R + N+ + + F+ ENV G+ + L + F Sbjct: 71 CQGFSQGGARKADRKINTLYLEFARALSKIKPKAFIVENVSGMVRRNFEHLLKDQFKVFE 130 Query: 886712 MAGYDVRLPWKVLDAADYGTPQHRQRLFLIGAKRGETLPEIPPPQTNAADARKPLAHLPG 886533 AGY V ++L+A+ YG Q R+R+F++G ++ + P T+ D P + Sbjct: 131 EAGYTVSS--QILNASHYGVSQDRKRIFIVGIRKDYGITYKFPKPTH-GDGLTPYS---- 183 Query: 886532 GPTVRDAIEDLPDADRFASLVESDAVRTSAMGEPSTYAAELRCLNNDAWHYGYPRNWTPT 886353 T+RDAI +P +GE Y A+ W+Y RN Sbjct: 184 --TIRDAIGHMP---------------VWPVGE--FYDADFH------WYY-LSRNRRQD 217 Query: 886352 WMTSSARTAHSEISRRRFQETPQGAVEPIS-RFYKLAPGGLCNTLRAGTDGARGAFTSPR 886176 W +IS+ + PIS KL P + FTS Sbjct: 218 W---------DQISKTIVANPRHMPLHPISPTLEKLGPD-------------KWQFTSDA 255 Query: 886175 PIHYEYNRCITVREMARLHGFPDWFRLHATKWHGGRQ---VGNSVPPPLARAVASEI 886014 P R + RE A L GF D + + VGN+VPPPL AVA + Sbjct: 256 PA-----RRFSYREAAILQGFGDLIFPETERASINMKYTVVGNAVPPPLFEAVARNL 307 >ref|YP_006930.1|putative Sir2-like protein Length = 272 Score = 72.4 bits (176), Expect = 6e-11 Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 10/187 (5%) Frame = +3 Query: 285189 MDSIFILTGAGISAESGLGTFRDKDG----LWTRYDLSRVATPEGFRAD-PALVHDFYNM 285353 M + I++GAG+S ESG+ FR LW YDL V FR + H FYN Sbjct: 1 MRRLIIISGAGLSVESGVRAFRTDTASGKALWDDYDLEEVCNIHAFRGNFYHKTHMFYNK 60 Query: 285354 RRKNCLDXXXXXXXXXXXRLGRDHPGEVTLVTQNVDDLHERAG--STGVIHMHGELRRAL 285527 RR+ + +PG+V +T NVDDL ERAG + ++H+HG L+ + Sbjct: 61 RREELKTVEPNLAHLRIGEWYKKYPGQVVNLTTNVDDLIERAGVPHSDILHIHGYLKEVV 120 Query: 285528 CAACGHRWPAPERMRSEDACPSCGRPATRPDIVWFGEMP---YRMDEILERLARATLFVV 285698 A + ++ +P++++FGE M I + + + VV Sbjct: 121 VADSYNSSNKRVIDVGYNSIDPDDYKWVKPNVIFFGEHAPAYTEMYNIFDGITSQDMIVV 180 Query: 285699 IGSSGEV 285719 +G S +V Sbjct: 181 VGCSNQV 187 >ref|YP_024453.1|putative PhoH-related protein Length = 246 Score = 72.0 bits (175), Expect = 8e-11 Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 16/202 (7%) Frame = -3 Query: 692421 VEPRTEAQKAYVANLFDH--ELAFGIGPAGTGKTYLAVAVGVTMLIGGVVDRIILSRPAV 692248 +E T Q + + F+ E+ + AGTGKT +VA + + + P Sbjct: 32 LEKATTEQLDFCEDFFNDNVEILWNESQAGTGKTMCSVACAYADYLNKNRKLVFIISPV- 90 Query: 692247 EAGERLGFLPGDMKEKIDPYMQPLYDALNDFL--PQKQLMK-LMEEKRIEIAPLA----- 692092 E LG PG+ EK Y L+DAL + P++Q+ + LM E ++ L Sbjct: 91 --SEDLGSRPGNQTEKEMAYFMGLHDALIELNMNPEQQITEMLMMEDNVKEDKLGDCWVS 148 Query: 692091 -----FMRGRTLSNAFVVLDEAQNATTMQMKMFLTRL-GEGSRMVVTGDRTQIDLPRGTA 691930 F+RG L +A ++++EAQN ++K LTR+ + S ++V G+ QIDL + Sbjct: 149 QISHLFLRGGNLRDATIIINEAQNFKRSELKKVLTRVHTKNSTVIVEGNFKQIDLKNESK 208 Query: 691929 SGLADAERVLKSVRGVSFNYFT 691864 SG D K+ G F+ FT Sbjct: 209 SGFGDYMEYFKNYEGAVFHNFT 230 >ref|NP_511017.1|methylase Length = 270 Score = 72.0 bits (175), Expect = 8e-11 Identities = 60/255 (23%), Positives = 116/255 (45%), Gaps = 7/255 (2%) Frame = -1 Query: 889991 GGKKRLHPLILERIEAIPHRAYVEPFVGMGGIFLRRRFRPRLEVMNDRNGEIINLFRILQ 889812 G K L LI++ + H++Y+EPF G +F+ ++ + LE +ND + ++NLF+ ++ Sbjct: 9 GSKWSLADLIIDNMPE--HKSYLEPFCGSCAVFMNKQ-KATLETINDLDSRLVNLFKAMR 65 Query: 889811 RHYPQLLEIMRFQICSRREFDRLRLTDPATLTDLERAARFLYLQRLSFGGKPNGSFGISP 889632 + +L ++ + SR E+ L+ + LE A R + GGK N + G Sbjct: 66 DNPEKLQYLIMHTLYSREEY---MLSHEISSDSLEDARRMAVRLWFAVGGKTNANVGFRK 122 Query: 889631 G---NGPL--FSLARLEPLLDAARTRLDGVVFECLDWADLIPRYDTAETLFYLDPPYFGG 889467 NGP + + + A RL E +D LI +++ +TL Y DPPY Sbjct: 123 NVSWNGPYNAYEWNDMYNRIGIAAARLKDAQIENVDAIKLIEQHNDKDTLIYCDPPYIPT 182 Query: 889466 E--NDYGKGLFDRAQFARIAEILGSLKGAFLLSINDTPEIRALFGRFHLEPVRLNYSVSA 889293 + + + F Q + ++L + +G +LS ++ + + +++ Sbjct: 183 SLVSPHYQHDFSLEQHKELLKVLKNHEGKVMLSGYESELYKQELSDWPALKTMTKVGITS 242 Query: 889292 AGSTEAQELLVSNRE 889248 ++ QE++ N E Sbjct: 243 EKKSDRQEIIWCNFE 257 Score = 65.9 bits (159), Expect = 6e-09 Identities = 54/213 (25%), Positives = 100/213 (46%), Gaps = 7/213 (3%) Frame = +1 Query: 744427 GGKKRLHPLILERIEAIPHRAYVEPFVGMGGIFLRRRFRPRLEVMNDRNGEIINLFRILQ 744606 G K L LI++ + H++Y+EPF G +F+ ++ + LE +ND + ++NLF+ ++ Sbjct: 9 GSKWSLADLIIDNMPE--HKSYLEPFCGSCAVFMNKQ-KATLETINDLDSRLVNLFKAMR 65 Query: 744607 RHYPQLLEIMRFQICSRREFDRLRLTDPATLTDLERAARFLYLQRLSFGGKLDGVFGVSA 744786 + +L ++ + SR E+ L+ + LE A R + GGK + G Sbjct: 66 DNPEKLQYLIMHTLYSREEY---MLSHEISSDSLEDARRMAVRLWFAVGGKTNANVGFRK 122 Query: 744787 G---HGP--RFSLARLEPVLDAAHERLDGVVFESLDWADLIPRYDTTETLFYLDPPYFGG 744951 +GP + + + A RL E++D LI +++ +TL Y DPPY Sbjct: 123 NVSWNGPYNAYEWNDMYNRIGIAAARLKDAQIENVDAIKLIEQHNDKDTLIYCDPPYIPT 182 Query: 744952 E--NDYGKGLFDRAQFARIAEILGGLKGAFLLS 745044 + + + F Q + ++L +G +LS Sbjct: 183 SLVSPHYQHDFSLEQHKELLKVLKNHEGKVMLS 215 Score = 52.4 bits (124), Expect = 6e-05 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 5/166 (3%) Frame = +2 Query: 423740 ILDRSP-CLTYAEPFVGMAGIFLRRSSRPRAEVINDRGRDVANLFRILQRHYPQFLDTLR 423916 I+D P +Y EPF G +F+ + + E IND + NLF+ ++ + + + Sbjct: 18 IIDNMPEHKSYLEPFCGSCAVFMNKQ-KATLETINDLDSRLVNLFKAMRDNPEKLQYLIM 76 Query: 423917 FQLTTRAEFERLGATDPDTLTDLERAARFLYLQRTAFGGKVSGR-NFGVSSHRPGRFNLT 424093 L +R E+ D+L D R A L+ A GGK + F + G +N Sbjct: 77 HTLYSREEYMLSHEISSDSLEDARRMAVRLWF---AVGGKTNANVGFRKNVSWNGPYNAY 133 Query: 424094 TLEPMLEDLH---SRLAGVIVECLDWADFLARYDRPETLFYLDPPY 424222 M + +RL +E +D + +++ +TL Y DPPY Sbjct: 134 EWNDMYNRIGIAAARLKDAQIENVDAIKLIEQHNDKDTLIYCDPPY 179 >ref|NP_076827.1|Csp Length = 66 Score = 71.6 bits (174), Expect = 1e-10 Identities = 33/61 (54%), Positives = 43/61 (70%) Frame = +3 Query: 733305 MANGTVKWFNATKGFGFIAPTGGSKDVFVHVTALERAGIRQLDDGQAVSFDLERDRNGRE 733484 MANGTVKWFNA KGFGFI G KD+F H +A++ G + LD+GQ V FD+E + G + Sbjct: 1 MANGTVKWFNADKGFGFITSEEG-KDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQ 59 Query: 733485 S 733487 + Sbjct: 60 A 60 Score = 67.8 bits (164), Expect = 1e-09 Identities = 33/68 (48%), Positives = 46/68 (67%) Frame = -1 Query: 732608 MANGTVKWFNATKGFGFIAPAHGSKDVFVHVTALERAGIRQLNDGQALTYDMETDRNGRE 732429 MANGTVKWFNA KGFGFI G KD+F H +A++ G + L++GQ + +D+E + G + Sbjct: 1 MANGTVKWFNADKGFGFITSEEG-KDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGLQ 59 Query: 732428 SATNLVLA 732405 A N+ A Sbjct: 60 -AVNITKA 66 >ref|NP_052271.1|Orf51; P2 E homolog; tail protein Length = 111 Score = 71.2 bits (173), Expect = 1e-10 Identities = 36/81 (44%), Positives = 54/81 (66%) Frame = +2 Query: 419147 TLLQPLKRASGDIASVTVRKPDVGSLRGLKLTDILQMDVTALSRLLPRITEPALLPDEVA 419326 TL +P+KRA I VT+ +P+ G+LRG+ L + Q +V AL ++LPR+T PAL E+ Sbjct: 28 TLDKPIKRAGQTIEKVTLIEPNAGTLRGVSLAAVAQSEVDALIKVLPRMTYPALTTQELT 87 Query: 419327 ALDPADFLGLSAAVVGFFATA 419389 A++ D L L+A V+GF + A Sbjct: 88 AMNLPDMLSLAAKVIGFLSPA 108 >ref|NP_958078.1|gp23.5 Length = 162 Score = 71.2 bits (173), Expect = 1e-10 Identities = 36/80 (45%), Positives = 53/80 (66%) Frame = +2 Query: 419147 TLLQPLKRASGDIASVTVRKPDVGSLRGLKLTDILQMDVTALSRLLPRITEPALLPDEVA 419326 TL +P+KRA I VT+ +P+ G+LRG+ L + Q +V AL ++LPR+T PAL E+ Sbjct: 28 TLDKPIKRAGQTIDKVTLIEPNAGTLRGVSLAAVAQSEVDALIKVLPRMTYPALTAQELT 87 Query: 419327 ALDPADFLGLSAAVVGFFAT 419386 A++ D L L+A V+GF T Sbjct: 88 AMNLPDMLSLAAKVIGFLVT 107 >ref|NP_958079.1|gp23 Length = 111 Score = 70.9 bits (172), Expect = 2e-10 Identities = 36/81 (44%), Positives = 54/81 (66%) Frame = +2 Query: 419147 TLLQPLKRASGDIASVTVRKPDVGSLRGLKLTDILQMDVTALSRLLPRITEPALLPDEVA 419326 TL +P+KRA I VT+ +P+ G+LRG+ L + Q +V AL ++LPR+T PAL E+ Sbjct: 28 TLDKPIKRAGQTIDKVTLIEPNAGTLRGVSLAAVAQSEVDALIKVLPRMTYPALTAQELT 87 Query: 419327 ALDPADFLGLSAAVVGFFATA 419389 A++ D L L+A V+GF + A Sbjct: 88 AMNLPDMLSLAAKVIGFLSPA 108 >ref|NP_892048.1|portal protein Length = 419 Score = 70.5 bits (171), Expect = 2e-10 Identities = 55/234 (23%), Positives = 98/234 (41%), Gaps = 6/234 (2%) Frame = +3 Query: 759270 HLRYMAEDGWTGRSPLEVAAESVGLALAGQEXXXXXXXXXXXXXXIRLRDDYEDDEXXXX 759449 H++ + DG+ G SP++ + +GL +A ++ + + +E Sbjct: 164 HIKSFSLDGYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGV-IERPFEAKAIASQ 222 Query: 759450 XXXXXXXXXXXPEVEGFP------ILGEGEDVKTLDMKAADQELLGSRKFDREQIAAIYR 759611 G +L EG K L +LL SR++ ++ +Y+ Sbjct: 223 AAVDAILAKWTERYGGVRNAFSVGMLQEGMTYKQLSQDNEKAQLLQSRQYTVNEVCRLYK 282 Query: 759612 VPPAKLQMMEYGVKANGEQQAIDYLTDCLLHWAKQVEDQLALGVLTEAERRAGLFFRHDF 759791 VPP +Q ++ N E Q + Y+ +L K+ E + +L +ERR + + Sbjct: 283 VPPHMIQDLQKSTNNNIEHQGLQYVIYTMLAILKRHESAMMRDLLLPSERR-DFYIEFNV 341 Query: 759792 GALLRPTTRERYEALAKAVGGPILTPNEARRIDGYDPIEGGDRLNPAPNMTRSE 759953 +LLR + RYE+ A L+ N+ RR++ PI GGD+ NM S+ Sbjct: 342 SSLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLTPIPGGDKYLTPLNMVDSK 395 >ref|YP_024677.1|gp04 Length = 90 Score = 69.7 bits (169), Expect = 4e-10 Identities = 39/85 (45%), Positives = 51/85 (60%) Frame = -2 Query: 681523 SELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARVGRN 681344 S+LI +A E +T+ + V E I ++L +GD V L GFG FSV AR AR GRN Sbjct: 4 SDLINHVAAETG-MTKTDSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTGRN 62 Query: 681343 PRTGEAVEVEDKKVPFFKTGKLLRD 681269 P TGE +++ K P FK GK L+D Sbjct: 63 PATGEEIKIPASKAPKFKAGKGLKD 87 >ref|NP_542315.1|unknown Length = 133 Score = 68.9 bits (167), Expect = 7e-10 Identities = 34/69 (49%), Positives = 47/69 (68%) Frame = -3 Query: 708705 LRQFIERYEQLEAEKKEIGGQQKELMAEAKGRGYAPKILRMIVALRKRTPDDIAEEETLL 708526 L+ FI R E+LE EKK I K++ EAKG G+ KILR +++LRK+ D+ E+E +L Sbjct: 57 LKAFIHRIERLEEEKKTIADDIKDVYGEAKGTGFDAKILRKVISLRKQDTDERMEQEAIL 116 Query: 708525 ELYKAALGM 708499 + Y AALGM Sbjct: 117 DTYLAALGM 125 >ref|NP_839905.1|putative methylase Length = 185 Score = 67.8 bits (164), Expect = 1e-09 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 3/168 (1%) Frame = -1 Query: 887078 EQAGFDVAAAVEIDPVHCAVHK-FNFPDTAVIPRSVVGLTAEEIRESAGIGNRPIDCVFG 886902 EQAG + EID +K + + + ++ EE R G ++ + G Sbjct: 18 EQAGHECVGFCEIDKFARQSYKAIHNTEGEREYHDITTVSNEEWRTLRGT----VELICG 73 Query: 886901 GPPCQGFSLIGHRA--LEDPRNSXXXXXXXXXXXLDARTFVFENVKGLTVGSHRTFLSEL 886728 G PCQ FS+ G R L++ R + + RT ENV+GL + Sbjct: 74 GFPCQAFSIAGKRKGFLDETRGTLFFEIARAAEQIKPRTLFLENVRGLLSHDKGRTFRTI 133 Query: 886727 VAAFGMAGYDVRLPWKVLDAADYGTPQHRQRLFLIGAKRGETLPEIPP 886584 ++ GYD W++L++ ++G PQ+R+R+F+IG RGE E+ P Sbjct: 134 ISTLDELGYDAE--WQILNSKNFGVPQNRERVFIIGHLRGERGREVFP 179 >ref|NP_878223.1|gpE Length = 91 Score = 67.4 bits (163), Expect = 2e-09 Identities = 35/79 (44%), Positives = 49/79 (62%) Frame = +2 Query: 419147 TLLQPLKRASGDIASVTVRKPDVGSLRGLKLTDILQMDVTALSRLLPRITEPALLPDEVA 419326 TL P+KR I VT+ KP+ G+LRG+ L + +V AL ++LPR+T P L EVA Sbjct: 8 TLDNPVKRGEQVIEQVTLMKPNAGTLRGVSLAAVANSEVDALIKVLPRMTAPMLTEQEVA 67 Query: 419327 ALDPADFLGLSAAVVGFFA 419383 AL+ D + L+ VVGF + Sbjct: 68 ALELPDLVALAGKVVGFLS 86 >ref|NP_839873.1|gpE Length = 91 Score = 67.4 bits (163), Expect = 2e-09 Identities = 35/79 (44%), Positives = 49/79 (62%) Frame = +2 Query: 419147 TLLQPLKRASGDIASVTVRKPDVGSLRGLKLTDILQMDVTALSRLLPRITEPALLPDEVA 419326 TL P+KR I VT+ KP+ G+LRG+ L + +V AL ++LPR+T P L EVA Sbjct: 8 TLDNPVKRGEQVIEQVTLMKPNAGTLRGVSLAAVANSEVDALIKVLPRMTAPMLTEQEVA 67 Query: 419327 ALDPADFLGLSAAVVGFFA 419383 AL+ D + L+ VVGF + Sbjct: 68 ALELPDLVALAGKVVGFLS 86 >ref|NP_839872.1|gpE+E' Length = 142 Score = 67.4 bits (163), Expect = 2e-09 Identities = 35/80 (43%), Positives = 49/80 (61%) Frame = +2 Query: 419147 TLLQPLKRASGDIASVTVRKPDVGSLRGLKLTDILQMDVTALSRLLPRITEPALLPDEVA 419326 TL P+KR I VT+ KP+ G+LRG+ L + +V AL ++LPR+T P L EVA Sbjct: 8 TLDNPVKRGEQVIEQVTLMKPNAGTLRGVSLAAVANSEVDALIKVLPRMTAPMLTEQEVA 67 Query: 419327 ALDPADFLGLSAAVVGFFAT 419386 AL+ D + L+ VVGF + Sbjct: 68 ALELPDLVALAGKVVGFLVS 87 >ref|NP_046781.1|gpE Length = 91 Score = 67.0 bits (162), Expect = 2e-09 Identities = 35/79 (44%), Positives = 48/79 (60%) Frame = +2 Query: 419147 TLLQPLKRASGDIASVTVRKPDVGSLRGLKLTDILQMDVTALSRLLPRITEPALLPDEVA 419326 TL P+KR I VT+ KP G+LRG+ L + +V AL ++LPR+T P L EVA Sbjct: 8 TLDNPVKRGEQVIEQVTLMKPSAGTLRGVSLAAVANSEVDALIKVLPRMTAPMLTEQEVA 67 Query: 419327 ALDPADFLGLSAAVVGFFA 419383 AL+ D + L+ VVGF + Sbjct: 68 ALELPDLVALAGKVVGFLS 86 >ref|NP_878222.1|gpE+E' Length = 142 Score = 67.0 bits (162), Expect = 2e-09 Identities = 35/77 (45%), Positives = 48/77 (62%) Frame = +2 Query: 419147 TLLQPLKRASGDIASVTVRKPDVGSLRGLKLTDILQMDVTALSRLLPRITEPALLPDEVA 419326 TL P+KR I VT+ KP+ G+LRG+ L + +V AL ++LPR+T P L EVA Sbjct: 8 TLDNPVKRGEQVIEQVTLMKPNAGTLRGVSLAAVANSEVDALIKVLPRMTAPMLTEQEVA 67 Query: 419327 ALDPADFLGLSAAVVGF 419377 AL+ D + L+ VVGF Sbjct: 68 ALELPDLVALAGKVVGF 84 >ref|NP_059584.1|Int Length = 387 Score = 66.6 bits (161), Expect = 3e-09 Identities = 64/255 (25%), Positives = 110/255 (43%), Gaps = 24/255 (9%) Frame = +1 Query: 923086 QITPEACRSYTKA----RRKTVSVGTVWTELGHLRTCLLWAAKRG--LIQVAPHIERPAK 923247 ++ EACR K + K +V T T L ++ LL AA+R ++ AP I+ P Sbjct: 120 KLMDEACRKNGKQPPVFKPKPAAVATKATHLSFIKA-LLRAAEREWKMLDKAPIIKVPQP 178 Query: 923248 PAPRDRYLTHAEVSRLMEAECEPHIKLAITVLLTTAARVGAVLELTWDRVDLERGQIRLR 923427 R R+L E RL++ EC+ +K + L+T R ++ L W ++D++R + Sbjct: 179 KNKRIRWLEPHEAKRLID-ECQEPLKSVVEFALSTGLRRSNIINLEWQQIDMQR-----K 232 Query: 923428 VEAEGPRKGRATVPINNXXXXXXXXXXXXXXXDHVIEWA-----------GGPVKCIRK- 923571 V P + ++ I +H +W G +RK Sbjct: 233 VAWIHPEQSKSNHAIGVALNDTACRVLKKQIGNH-HKWVFVYKESSTKPDGTKSPVVRKM 291 Query: 923572 ------GFLRAVSNAGLLDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYA 923733 + A+ AG+ D H LRHT A + +AGVP+ + + G ++++ YA Sbjct: 292 RYDANTAWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRR-YA 350 Query: 923734 RFSPQHLRKAADALE 923778 +P HL + A ++ Sbjct: 351 HLAPNHLTEHARQID 365 >ref|NP_046780.1|gpE+E' Length = 142 Score = 66.6 bits (161), Expect = 3e-09 Identities = 35/77 (45%), Positives = 47/77 (61%) Frame = +2 Query: 419147 TLLQPLKRASGDIASVTVRKPDVGSLRGLKLTDILQMDVTALSRLLPRITEPALLPDEVA 419326 TL P+KR I VT+ KP G+LRG+ L + +V AL ++LPR+T P L EVA Sbjct: 8 TLDNPVKRGEQVIEQVTLMKPSAGTLRGVSLAAVANSEVDALIKVLPRMTAPMLTEQEVA 67 Query: 419327 ALDPADFLGLSAAVVGF 419377 AL+ D + L+ VVGF Sbjct: 68 ALELPDLVALAGKVVGF 84 >ref|NP_049845.1|NrdA aerobic NDP reductase, large subunit Length = 754 Score = 65.9 bits (159), Expect = 6e-09 Identities = 118/536 (22%), Positives = 197/536 (36%), Gaps = 60/536 (11%) Frame = -2 Query: 638467 FNCFVMGTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSF 638288 F+ V+ DS+ I A + + GIG + IR G+++ +G + F Sbjct: 219 FSSCVVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPF 278 Query: 638287 MDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKKDPA----RLRMFNLSVLVTD 638120 + ++ G R GA A H ++E+ + K + R+R + V + D Sbjct: 279 WKHFQTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLND 338 Query: 638119 AFMEA------VKADGPWELTFGGKVY-------------------------RTLQARDL 638033 ME + P E+ GG++Y + ++AR+L Sbjct: 339 LMMERFGKNDYITLFSPHEM--GGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKAREL 396 Query: 638032 WNRIMRSTYDFAEPGVIFIDRINQMNN-LAYCETISATNPCGEQPLPPYGA-CLLGSVNL 637859 + +M A V FID N + I +N C E +P + L Sbjct: 397 FELLMTERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGL 456 Query: 637858 ARLVAKPFSXXXXXXXXXXXXXXXXAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTG 637679 L A VR +DN++D +P+PE A +A+ +R +G+GVT Sbjct: 457 CTLSAFVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPE-AEKAKKRRNLGVGVTN 515 Query: 637678 LADALLMVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFPLFEADKYLGSGSL 637499 A L Y E+A T + + AS LA+EKG + +D G L Sbjct: 516 YAAWLASNFASY--EDANDLTHELFERLQYGLIKASIKLAKEKGPSEYY-SDTRWSRGEL 572 Query: 637498 ------THMDE-----------DVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEP 637370 +D+ +R ++ GIRN+ L+++ P + S N ++G EP Sbjct: 573 PIDWYNKKIDQIAAPKYVCDWSALREDLKLFGIRNSTLSALMPCES-SSQVSNSTNGYEP 631 Query: 637369 VFAYAYKRKVLQKDGSRTE-----EEVVDYAVRLWR-EQMGDAPLPDYFVNAQTLAPLEH 637208 ++ K+GS + E +D W+ + G+ P Q L+ Sbjct: 632 PRGPVSVKE--SKEGSFNQVVPNIEHNIDLYDYTWKLAKKGNKP-----YLTQVAIMLKW 684 Query: 637207 VRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTYRPNEVTGS 637040 V A+A + D I P I D L W G K + + +G+ Sbjct: 685 VCQSASANTYYDPQIFPKGKVPMSI----MIDDMLYGWYYGIKNFYYHNTRDGSGT 736 >ref|NP_599058.1|integrase Length = 387 Score = 65.5 bits (158), Expect = 7e-09 Identities = 65/255 (25%), Positives = 106/255 (41%), Gaps = 24/255 (9%) Frame = +1 Query: 923086 QITPEACRSYTKA----RRKTVSVGTVWTELGHLRTCLLWAAKRG--LIQVAPHIERPAK 923247 ++ EACR K K SV T T L ++ LL AA+R ++ AP I+ P Sbjct: 120 RLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKA-LLRAAEREWKMLDKAPIIKVPQP 178 Query: 923248 PAPRDRYLTHAEVSRLMEAECEPHIKLAITVLLTTAARVGAVLELTWDRVDLERGQIRLR 923427 R R+L E RL++ EC +K + L T R ++ L W ++D++R R Sbjct: 179 KNKRIRWLEPHEAQRLID-ECPEPLKSVVEFALATGLRRSNIINLEWQQIDMQR-----R 232 Query: 923428 VEAEGPRKGRATVPINNXXXXXXXXXXXXXXXDHVIEWA-----------GGPVKCIRK- 923571 V P + ++ I +H W G +R+ Sbjct: 233 VAWINPEESKSNRAIGVALNDTACRVLKKQIGNH-HRWVFVYKESCTKPDGTKAPTVREM 291 Query: 923572 ------GFLRAVSNAGLLDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYA 923733 + A+ AG+ D H LRHT A + +AGVP+ + + G ++++ YA Sbjct: 292 RYDANTAWKAALRRAGIDDFRFHDLRHTWASWLGQAGVPLSVLQEMGGWESIEMVRR-YA 350 Query: 923734 RFSPQHLRKAADALE 923778 +P HL + A ++ Sbjct: 351 HLAPNHLTEHARQID 365 >ref|YP_006360.1|Int Length = 387 Score = 65.1 bits (157), Expect = 9e-09 Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 24/255 (9%) Frame = +1 Query: 923086 QITPEACRSYTKA----RRKTVSVGTVWTELGHLRTCLLWAAKRG--LIQVAPHIERPAK 923247 ++ EACR K + K +V T T L ++ LL AA+R ++ AP I+ P Sbjct: 120 KLMDEACRKNGKQPPVFKPKPAAVATKATHLSFIKA-LLRAAEREWKMLDKAPIIKVPQP 178 Query: 923248 PAPRDRYLTHAEVSRLMEAECEPHIKLAITVLLTTAARVGAVLELTWDRVDLERGQIRLR 923427 R R+L E RL++ EC +K + L+T R ++ + W ++D++R + Sbjct: 179 KNKRIRWLEPHEAKRLID-ECPEPLKSVVEFALSTGLRRSNIINMDWQQIDMQR-----K 232 Query: 923428 VEAEGPRKGRATVPINNXXXXXXXXXXXXXXXDHVIEWA-----------GGPVKCIRK- 923571 V P + ++ I +H +W G +RK Sbjct: 233 VAWIHPEQSKSNQAIGVALNDTACRVLKKQIGNH-HKWVFVYKESSTKPDGTKSPVVRKM 291 Query: 923572 ------GFLRAVSNAGLLDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYA 923733 + A+ AG+ D H LRHT A + +AGVP+ + + G ++++ YA Sbjct: 292 RYDANTAWRSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRR-YA 350 Query: 923734 RFSPQHLRKAADALE 923778 +P HL + A ++ Sbjct: 351 HLAPNHLTEHARQID 365 >ref|NP_899523.1|aerobic ribonucleoside diphosphate reductase large subunit Length = 741 Score = 65.1 bits (157), Expect = 9e-09 Identities = 94/415 (22%), Positives = 163/415 (39%), Gaps = 59/415 (14%) Frame = -2 Query: 638437 DSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDAMCRT 638258 DS+ I + + + GIG + IR G+ V+ +G + F + ++ Sbjct: 226 DSLRSINKVSEAIVDYISKRAGIGVNGGAIRAEGSVVRAGEIRHTGVIPFWKHFQTAVKS 285 Query: 638257 IMSAGSRRGAMMATMRCDHPDIESFIEAKKDPA----RLRMFNLSV---------LVTDA 638117 G R GA T H ++E + K + R+R + SV LV + Sbjct: 286 CSQGGVRGGAATLTYPIWHLEVEKLLVLKNNKGVEENRIRHLDYSVSINRLMMQRLVNNE 345 Query: 638116 FMEAVKADGPWELTFGG---------KVYRTLQARD-LWNRIMRSTYDFAEPGV------ 637985 ++ D +G ++Y L+A + + +++T F+ G Sbjct: 346 YITLFSPDERHGALYGEYHTNPEEFERLYLELEADPKVRKKRIKATELFSIFGQERSSTG 405 Query: 637984 ----IFIDRINQMNNLAYCETISATNPCGEQPLPPY---------GACLLGSVNLARLVA 637844 IF+D +N + Y E I +N C E LP Y C L + NL + + Sbjct: 406 RIYPIFVDNLNAQS--PYIEAIKQSNLCMEIALPTYPLGTSYEEIALCTLAAYNLGAIES 463 Query: 637843 KPFSXXXXXXXXXXXXXXXXAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADAL 637664 +R +DN++D +P+ E A +A+ +R +G+G+T A L Sbjct: 464 PS----------EFARLAPIVIRALDNLLDYQDYPV-EAAEKAKYRRALGIGITNFAYFL 512 Query: 637663 LMVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFPLFEADKYLGSGSLT---- 637496 + Y S A WM+A++ AS LA+E+GA ++ G L Sbjct: 513 AKNFVGYDSS-AKYLVHEWMEAMSYYNIQASMMLAKERGANKWHRKTRW-AKGQLPIDWY 570 Query: 637495 ------------HMD-EDVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEP 637370 ++D E +RA + +G+RN ++ P + S N ++GIEP Sbjct: 571 NKNVDKLVKPNYNLDWEALRADVIRYGMRNDTTSAFMPCES-SSQISNSTNGIEP 624 >ref|NP_758917.1|ORF24 Length = 426 Score = 64.7 bits (156), Expect = 1e-08 Identities = 61/207 (29%), Positives = 95/207 (45%), Gaps = 11/207 (5%) Frame = +3 Query: 739632 RPLYRV-EGGVAVIEVTGTLVHRGGWI-GQSSGTTSYEGLMAQITAAVADPSVRGIALEI 739805 R Y+V + G A++ V G L HR G I TSYE + A+ DP V +I Sbjct: 55 RKAYQVTKEGWAIVPVIGGLAHRAGKIDADCMPITSYELIRHDYDTALNDPGV-----QI 109 Query: 739806 DSYG------GEVAGLFDLADTIRAARAVK-PVR--XXXXXXXXXXXXXXXXXXERIVLP 739958 D +G GE AG +DLA ++ +A VK PV +++ L Sbjct: 110 DRHGDLTHGGGEAAGCYDLAPSLLSAPGVKRPVTRVSLENESCYSAAYALACCCDQVFLT 169 Query: 739959 RTGAVGSIGVLLVHADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEA 740138 + GSIGV+ D ++ G+++ ++ +G +K D +P++ L + R LQA + Sbjct: 170 SSAGAGSIGVICGRLDQTEYNRKMGLSIAVV-SGDYKADFSPHKVLSDDERQRLQALIVQ 228 Query: 740139 SRGLFAETVAAGRGARLTRQQALATEA 740219 F VA RG +T +Q A +A Sbjct: 229 LGSEFHNLVAEARG--MTAEQVKALKA 253 Score = 64.3 bits (155), Expect = 2e-08 Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 10/194 (5%) Frame = -1 Query: 905363 GVAVIEVTGTLVHRGGWI-GQSSGTTSYEGLMAQISAAVADPSVRGIALEIDSYG----- 905202 G A++ V G L HR G I TSYE + A+ DP V +ID +G Sbjct: 64 GWAIVPVIGGLAHRAGKIDADCMPITSYELIRHDYDTALNDPGV-----QIDRHGDLTHG 118 Query: 905201 -GEVAGLFDLADAIRAARAVK-PVR--XXXXXXXXXXXXXXXXXAERIVLPRTGAVGSIG 905034 GE AG +DLA ++ +A VK PV +++ L + GSIG Sbjct: 119 GGEAAGCYDLAPSLLSAPGVKRPVTRVSLENESCYSAAYALACCCDQVFLTSSAGAGSIG 178 Query: 905033 VLLVHADFSQAMADRGVAVTLIHAGRHKVDGNPYEALPEGVRADLQARVEASRALFAETV 904854 V+ D ++ G+++ ++ +G +K D +P++ L + R LQA + + F V Sbjct: 179 VICGRLDQTEYNRKMGLSIAVV-SGDYKADFSPHKVLSDDERQRLQALIVQLGSEFHNLV 237 Query: 904853 AAGRGARLSRQQAL 904812 A RG + +AL Sbjct: 238 AEARGMTAEQVKAL 251 >ref|NP_720278.1|Int Length = 387 Score = 64.7 bits (156), Expect = 1e-08 Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 24/255 (9%) Frame = +1 Query: 923086 QITPEACRSYTKA----RRKTVSVGTVWTELGHLRTCLLWAAKRG--LIQVAPHIERPAK 923247 ++ EACR K + K ++ T T L ++ LL AA+R ++ AP I+ P Sbjct: 120 KLMDEACRKNGKQPPVFKPKPAALATKATHLSFIKA-LLRAAEREWKMLDKAPIIKVPQP 178 Query: 923248 PAPRDRYLTHAEVSRLMEAECEPHIKLAITVLLTTAARVGAVLELTWDRVDLERGQIRLR 923427 R R+L E RL++ EC +K + L+T R ++ L W ++D++R + Sbjct: 179 KNKRIRWLEPHEAKRLID-ECPEPLKSVVEFALSTGLRRSNIINLEWQQIDMQR-----K 232 Query: 923428 VEAEGPRKGRATVPINNXXXXXXXXXXXXXXXDHVIEWA-----------GGPVKCIRK- 923571 V P + ++ I +H +W G +RK Sbjct: 233 VAWIHPEQSKSNQAIGVALNDTACRVLKKQIGNH-HKWVFVYKESSTKPDGTKSPVVRKM 291 Query: 923572 ------GFLRAVSNAGLLDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYA 923733 + A+ AG+ D H LRHT A + +AGVP+ + + G ++++ YA Sbjct: 292 RYDANTAWRSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRR-YA 350 Query: 923734 RFSPQHLRKAADALE 923778 +P HL + A ++ Sbjct: 351 HLAPNHLTEHARQID 365 >ref|NP_052270.1|similar to P2 tail tube protein FII, Swiss-Prot Accession Number P22502 Length = 173 Score = 64.7 bits (156), Expect = 1e-08 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 10/175 (5%) Frame = +3 Query: 418623 MALPRTIRNFNAFVDGVSYFGIVDEGKLPAVKIQTEAHRGAGMDGPIGIDVGMEALASKM 418802 MALPR ++ N F DG+SY G+V+ LP + + E +RG GM+G ID+G++ A + Sbjct: 1 MALPRKLKYLNMFNDGLSYMGVVESVTLPKLTRKLENYRGGGMNGAAAIDLGLDDDALTV 60 Query: 418803 SFSEWVPAIVKKLGRQERFVFRPAMANPSDFGA----------VPIVATLSGLITVSEPG 418952 EW + + ++ A A P F V + + G + G Sbjct: 61 ---EWSVGGLPDVALWAQYAAPGADAVPLRFAGSYQRDDTGEIVAVEVVMRGRHKEIDGG 117 Query: 418953 DLKPGTPSKLKISMDVRSYRXXXXXXXXXXXXXPNAKRVIGGQDQLAEMRRAMGI 419117 + K G + K+S YR N + G D+L + RRA+G+ Sbjct: 118 ENKQGENTSTKLSTVCTYYRLTIDGSDIIEIDTVNMVEKVNGVDRLEQHRRAIGL 172 >ref|NP_958077.1|gp22 Length = 172 Score = 64.7 bits (156), Expect = 1e-08 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 10/175 (5%) Frame = +3 Query: 418623 MALPRTIRNFNAFVDGVSYFGIVDEGKLPAVKIQTEAHRGAGMDGPIGIDVGMEALASKM 418802 MALPR ++ N F DG+SY G+V+ LP + + E +RG GM+G ID+G++ A + Sbjct: 1 MALPRKLKYLNMFNDGLSYMGVVESVTLPKLTRKLENYRGGGMNGAAAIDLGLDDDALTV 60 Query: 418803 SFSEWVPAIVKKLGRQERFVFRPAMANPSDFGA----------VPIVATLSGLITVSEPG 418952 EW + + ++ A A P F V + + G + G Sbjct: 61 ---EWSVGGLPDVALWAQYAAPGADAVPLRFAGSYQRDDTGEIVAVEVVMRGRHKEIDGG 117 Query: 418953 DLKPGTPSKLKISMDVRSYRXXXXXXXXXXXXXPNAKRVIGGQDQLAEMRRAMGI 419117 + K G + K+S YR N + G D+L + RRA+G+ Sbjct: 118 ENKQGENTSTKLSTVCTYYRLTIDGSDVIEIDTVNMVEKVNGVDRLEQHRRAIGL 172 >ref|NP_758932.1|ORF40 Length = 167 Score = 64.3 bits (155), Expect = 2e-08 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 3/166 (1%) Frame = +3 Query: 418629 LPRTIRNFNAFVDGVSYFGIVDEGKLPAVKIQTEAHRGAGMDGPIGIDVGMEALASKMSF 418808 LP+ IR N F DG Y G+V+E P + ++TE + GMD P+ +D GME L + Sbjct: 2 LPQVIRAMNLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEKLECNFTV 61 Query: 418809 SEWVPAIVKKLGRQERFVFRPAM--ANPSDFGAVPIVATLSGLITVSEPGDLKPGTPSKL 418982 + + + G + + A D +V L+G + G K G ++L Sbjct: 62 ASYEKELFAAYGLVPGKMINVTLRGAFEQDGETREVVMVLNGSWKELDFGTWKSGEKAQL 121 Query: 418983 KISMDVRSYR-XXXXXXXXXXXXXPNAKRVIGGQDQLAEMRRAMGI 419117 K+++ ++ PN R I G D L R+A+G+ Sbjct: 122 KVAVGLQEVETKNPTGEEKVFIDIPNMVRRINGTDLLEAARKAIGL 167 >ref|NP_490622.1|hypothetical protein Length = 171 Score = 63.9 bits (154), Expect = 2e-08 Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 11/176 (6%) Frame = +3 Query: 418623 MALPRTIRNFNAFVDGVSYFGIVDEGKLPAVKIQTEAHRGAGMDGPIGIDVGMEALASKM 418802 MA+PR ++N N F DG SY G+V LP + + EA RG GM+GP+ D+G + + Sbjct: 1 MAMPRKLKNMNLFNDGGSYQGVVKSCTLPPLARKMEAFRGGGMNGPVKADLGFDDDGIQF 60 Query: 418803 SFSEWV-----------PAIVKKLGRQERFVFRPAMANPSDFGAVPIVATLSGLITVSEP 418949 EW V G RF + + +V IV + G E Sbjct: 61 ---EWTLGGLDLTALKQYGAVSANGVMLRFAGSFQQDDTGEVTSVEIV--VRGRHETIEM 115 Query: 418950 GDLKPGTPSKLKISMDVRSYRXXXXXXXXXXXXXPNAKRVIGGQDQLAEMRRAMGI 419117 GD +PG ++ KI+ Y+ N + G+D L R+A+G+ Sbjct: 116 GDAQPGEDTEHKITTTCSYYKLVVNGEEVIEIDLLNFVEKVNGKDLLEAQRKAIGL 171 >ref|NP_046713.1|ribunucleotide reductase large subunit Length = 1084 Score = 62.8 bits (151), Expect = 5e-08 Identities = 46/217 (21%), Positives = 91/217 (41%), Gaps = 31/217 (14%) Frame = -2 Query: 638470 LFNCFVMGTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLS 638291 + +CF++ V DS+ I A+ + + GGG+ + + +R +G +K V G + Sbjct: 166 MVSCFLL-EVGDSLNDISRAIDISMQLSKLGGGVALNLNKLRAKGEAIKDVENATKGVVG 224 Query: 638290 FMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVT 638123 M + D R G R+G+ + HPDI F++ KK + R++ ++ V+V Sbjct: 225 VMKLLDNAFRYADQMGQRQGSGAVYLSVFHPDITDFLDTKKISADEDVRVKTLSIGVVVP 284 Query: 638122 DAFMEAVKADGPWELTFGGKVYRTL---------------------------QARDLWNR 638024 D F+E + D + + + VY+ AR L + Sbjct: 285 DKFIELAREDKDYYMFYPHSVYKEYGQYLDELDINEMYDELVENPRVRKAKGNARKLLEQ 344 Query: 638023 IMRSTYDFAEPGVIFIDRINQMNNLAYCETISATNPC 637913 + + P ++F D +N+++ + + +N C Sbjct: 345 LAILRSESGYPYIMFADNVNKVHPNEHISKVKFSNLC 381 >ref|NP_852561.1|DNA integration Length = 369 Score = 62.8 bits (151), Expect = 5e-08 Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 26/223 (11%) Frame = +1 Query: 923173 LRTCLLWAAKRGLIQVAP--HIERPAKPAPRDRYLTHAEVSRLMEAECEPHIKLAITVLL 923346 L++ L A K+ +I P E P K + T EV + + E + + + Sbjct: 137 LKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAHSQESRYHIGYLLAI 196 Query: 923347 TTAARVGAVLELTWDRVDLERGQIRLRVEAEGPRK---------GRATVPINNXXXXXXX 923499 TT R+G VL L W +D E+ + + + K + T+P+ N Sbjct: 197 TTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPNETIAALK 256 Query: 923500 XXXXXXXXDHVIEWAG----GPVKC-----------IRKGFLRAVSNAGLLDVTLHTLRH 923634 + + + + C RK F+R G+ ++ H LRH Sbjct: 257 KHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHKVGIKEIKFHDLRH 316 Query: 923635 TAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKA 923763 T A + + GV IS+ LGH+++ +T SVY+ P +A Sbjct: 317 THATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEA 359 >ref|NP_899372.1|exsB protein Length = 238 Score = 62.4 bits (150), Expect = 6e-08 Identities = 62/213 (29%), Positives = 89/213 (41%), Gaps = 17/213 (7%) Frame = +3 Query: 750243 SGGLDSTTVAYWLTERGVQ--FIPVFFDYGQHCVETEWETLKEVLPASAAHPERNDISDL 750416 SGGLDST + Y L + + + F YGQ E E K DIS L Sbjct: 8 SGGLDSTILTYKLVDEFGKDNVFALSFYYGQK-QSIELEKAKLTCQKLGIEHRLIDISFL 66 Query: 750417 ----------FRGSKSRLITEADLWNEEVKDEDLYVPYRTLLFYSAAAARAQTLGAFEVY 750566 GS + T D+ + + VPYR +L + A + AQ G V+ Sbjct: 67 GEVVAPVCANIAGSDVAMPTIQDVLGDPQPPTE--VPYRNMLLNTIAFSFAQANGCSAVF 124 Query: 750567 TGFINSNRAKEIDCTAEF---MNKLDALTDSVGPVRFLSPFRFWSKSEVAKESIRLGVPI 750737 TG + DCT +F MNK+ AL + + +PF SK++ + LGVP Sbjct: 125 TGIQVHDAYGYWDCTQDFLDGMNKISAL-NRQHEITLHAPFAQMSKADEIAIGVELGVPF 183 Query: 750738 GRTFSCQAASLM--PCGACPNCVERLAALRETG 750830 + +C + CG CP+C ER+ + G Sbjct: 184 EDSLTCYDPNEAGESCGKCPSCAERIMNFGKAG 216 >ref|NP_075502.1|portal protein Length = 412 Score = 62.0 bits (149), Expect = 8e-08 Identities = 36/135 (26%), Positives = 65/135 (48%) Frame = +3 Query: 759516 GEDVKTLDMKAADQELLGSRKFDREQIAAIYRVPPAKLQMMEYGVKANGEQQAIDYLTDC 759695 G +++ L K ++++ S RE++A ++++P L A E+ YL Sbjct: 248 GVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHT 307 Query: 759696 LLHWAKQVEDQLALGVLTEAERRAGLFFRHDFGALLRPTTRERYEALAKAVGGPILTPNE 759875 LL KQ E++ +LT+ +R +F+ + + LR + + E KAV T N+ Sbjct: 308 LLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTIND 367 Query: 759876 ARRIDGYDPIEGGDR 759920 R + P+EGGD+ Sbjct: 368 IREWEDLPPVEGGDK 382 >ref|NP_803337.1|head portal protein Length = 348 Score = 61.6 bits (148), Expect = 1e-07 Identities = 36/135 (26%), Positives = 65/135 (48%) Frame = +3 Query: 759516 GEDVKTLDMKAADQELLGSRKFDREQIAAIYRVPPAKLQMMEYGVKANGEQQAIDYLTDC 759695 G +++ L K ++++ S RE++A ++++P L A E+ YL Sbjct: 184 GVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHT 243 Query: 759696 LLHWAKQVEDQLALGVLTEAERRAGLFFRHDFGALLRPTTRERYEALAKAVGGPILTPNE 759875 LL KQ E++ +LT+ +R +F+ + + LR + + E KAV T N+ Sbjct: 244 LLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTIND 303 Query: 759876 ARRIDGYDPIEGGDR 759920 R + P+EGGD+ Sbjct: 304 IREWEDLPPVEGGDK 318 >ref|NP_463477.1|putative tape-measure protein Length = 1794 Score = 61.2 bits (147), Expect = 1e-07 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 3/151 (1%) Frame = +1 Query: 419878 LTNLEGSAEGADRALRWIEDFATRTPLQLNDTVAAYARLKAFGLDPT--KGAMQALVDTM 420051 LT L GSA+ A + + TP+ L+ ++ A G+ K A+ D Sbjct: 387 LTVLTGSAKDAQLVMTDLTAAIDGTPIALDAVALGAKKMVAAGMQAANVKPVFTAIADAA 446 Query: 420052 AATGGGAEQLDGLVLALGQAWTKGKLQGEEALQMLERGVPVWDLLGAKMGKTAAELQEMA 420231 G G+E +D + A+ G ++ ++++ GVP W +L GK+ E+++ Sbjct: 447 YGVGNGSESIDQMTDAISALQASGVAYSDDINRLVDAGVPAWQILANSTGKSVGEMKKYV 506 Query: 420232 SKGQL-GRKEIELLIEAMAEKNKGASEGMAK 420321 S+G L K I +L + + E G + AK Sbjct: 507 SEGSLESTKAIAMLTKGIEEGTTGMAGNTAK 537 >ref|NP_932451.1|hypothetical protein Length = 202 Score = 60.5 bits (145), Expect = 2e-07 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 17/199 (8%) Frame = -1 Query: 493943 VILGAASFALAGCREEEVE---------AQAFPDVESCRA---AASNGGLFSVEECDKSF 493800 ++ S AL+GC + + +A P V + A A GG S+E+C +F Sbjct: 9 IMAAFVSAALSGCGQANTDDTFTYNGLGGEATPTVTAVSAQQCAELGGG--SLEQCQSAF 66 Query: 493799 AEAQQLHVESAPRYDSVXXXXXXXXXXXXXXXXEVTGGSGMGGIFMPLLTGYLIGSMLSG 493620 +A+ H++SAP+++ + + GS +F+P + G ++G M+S Sbjct: 67 DKAKMEHIDSAPKFNDQASCESGTEAICNRTQIQNSDGS-FSDVFVPAMVGMIVGQMMSN 125 Query: 493619 RGVASAQPLYRTADGKFTNAARTSTYSSNTGSAR--LGTSTFARP--PSTIGKP-PMSVA 493455 + P+Y A + ++ + A+ +G +TF+ P P + KP P S Sbjct: 126 N--SRPMPVYAPARPEDRKNGFVTSGGAYVPPAKGSVGANTFSAPKTPGSFSKPSPSSKP 183 Query: 493454 SPASRGGFGSTGASRGFGG 493398 S +S+GGFG +G+ GG Sbjct: 184 SFSSKGGFGKSGSFGSSGG 202 >ref|NP_075302.1|gp35 Length = 500 Score = 59.3 bits (142), Expect = 5e-07 Identities = 87/342 (25%), Positives = 136/342 (39%), Gaps = 33/342 (9%) Frame = -3 Query: 706383 RAAIYARYSTELQDGRSIDDQVALCREHAARSGLTVVATYDDRAKTSA----SIFGRDGL 706216 RA + R S S + Q+ C++ A+ G VV +D + A R L Sbjct: 2 RALVVIRLSRVTDATTSPERQLESCQQLCAQRGWDVVGVAEDLDVSGAVDPFDRKRRPNL 61 Query: 706215 ARMMEQARARQFDVVIVEALDRLSRDQEDL------AHIHKRLSFARIDILTVHEGVADS 706054 AR + + FDV++ +DRL+R L A HK+L + + + Sbjct: 62 ARWLA-FEEQPFDVIVAYRVDRLTRSIRHLQQLVHWAEDHKKLVVSATEAHFDTTTPFAA 120 Query: 706053 VSVGLRGLMGTMFLEALKAKTRRGLAGVIRDGRHAGG-QTYGYRGVPGEPGKREIVAH-- 705883 V + L G + M LEA+K + R IR G++ G +GY + G+ +V Sbjct: 121 VVIALMGTVAQMELEAIKERNRSAAHFNIRAGKYRGSLPPWGYLPTRVD-GEWRLVPDPV 179 Query: 705882 EAEIIREIFAAYVEGKSP-RTIAGELNARGIAAPR------------GPKWNASTLN--- 705751 + E I E++ V+ P +A +LN RG+ +P+ G +W+A+ L Sbjct: 180 QRERILEVYHRVVDNHEPLHLVAHDLNRRGVLSPKDYFAQLQGREPQGREWSATALKRSM 239 Query: 705750 -GNPQRGYGILRNPMYDGRLVWNRVTMVRDPDTGRRVNRENPLDARQEVEAEHLRIVPRP 705574 GY L VRD D G + R P+ R+++E Sbjct: 240 ISEAMLGYATLNG------------KTVRD-DDGAPLVRAEPILTREQLE---------- 276 Query: 705573 LFEAAVRRHAQQAEAVRTGKITKAPPRPFSGLIR---CACCG 705457 A +AE V+T + A P S L+R CA CG Sbjct: 277 ---------ALRAELVKTSRAKPAVSTP-SLLLRVLFCAVCG 308 >ref|YP_006924.1|putative aerobic ribonucleoside diphosphate reductase, large subunit Length = 811 Score = 58.5 bits (140), Expect = 9e-07 Identities = 56/224 (25%), Positives = 96/224 (42%), Gaps = 17/224 (7%) Frame = -2 Query: 637780 VRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYGSEEAAARTEAWMK 637601 ++ +D +++ +P P A+ +R +G+G+ A A+ GL Y EA + Sbjct: 540 LKFVDTIIEIQDYPFPTMEYTAKKRRNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAE 599 Query: 637600 AIARSAYLASADLAREKGAFPLFEADK----------------YLGSGSLTHMDEDVRAA 637469 ++ + AS LA+E+GA F K L S L E +RA Sbjct: 600 KLSYFLHKASVRLAKEQGACEWFNRTKPSKGILVIDTYKKTVDELVSVGLEMDWESLRAD 659 Query: 637468 IRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRKVLQKDGSRTEEEV-VDYA 637292 I +G+RN++LT+ P + S+ G V++ IEP RK++ GS + + + Sbjct: 660 ILKYGMRNSVLTAQMPGESSSVLLG-VTNSIEP------PRKIVSIKGSAVNKVIAIAPG 712 Query: 637291 VRLWREQMGDAPLPDYFVNAQTLAPLEHVRMQAAAQKWIDSSIS 637160 W M + A + +E ++ A QK+ SIS Sbjct: 713 ATDWETLMS-------YKLAYDVDRIEWIKWVATMQKFFSQSIS 749 >ref|NP_861929.1|NrdA aerobic NDP reductase, large subunit Length = 751 Score = 58.2 bits (139), Expect = 1e-06 Identities = 91/423 (21%), Positives = 158/423 (37%), Gaps = 57/423 (13%) Frame = -2 Query: 638467 FNCFVMGTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSF 638288 F+ V+ DS+ I + + GIG + +R G+++ +G + F Sbjct: 216 FSSCVVIEAGDSLKSINKTSASIIEYISKRAGIGINVGMLRAEGSKIGMGEVRHTGVIPF 275 Query: 638287 MDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTD 638120 + ++ G R GA A H ++E+ + K D R+R + + + D Sbjct: 276 WKHFQTAVKSCSQGGIRGGAATAYYPMWHLEVENLLVLKNNKGVDENRIRHMDYGIQIND 335 Query: 638119 AFMEAVKAD------GPWELTFGGKVY-------------------------RTLQARDL 638033 ME + + P E++ G++Y + ++A +L Sbjct: 336 LMMERLGKNDYITLFSPHEMS--GELYYSFFEDQDKFRELYEKAEKDPTIRKKRIKALEL 393 Query: 638032 WNRIMRSTYDFAEPGVIFIDRINQMNNLAYCET-ISATNPCGEQPLPPYGA----CLLGS 637868 + M A F+D N + I +N C E +P +G Sbjct: 394 FELFMTERSGTARIYPQFVDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNGPDAEIGL 453 Query: 637867 VNLARLVAKPFSXXXXXXXXXXXXXXXXAVRMMDNVVDASRFPLPEQAREAQMKRRIGLG 637688 L+ V F VR +DN++D +P+PE A +A+ +R +G+G Sbjct: 454 CTLSAFVLDKFDWQDQDKINELAEVQ---VRALDNLLDYQDYPVPE-ALKAKKRRNLGVG 509 Query: 637687 VTGLADALLMVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFPLFEADKYLGS 637508 VT A L Y E+A T + + AS LA+EKG + K+ Sbjct: 510 VTNYAAWLASNFASY--EDANYLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTKW-SR 566 Query: 637507 GSLT------HMDE-----------DVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSG 637379 G L +D+ + + HGIRN+ L+++ P + S N ++G Sbjct: 567 GELPIDWYNKKIDQIAAPNYVCDWKNFELNSKEHGIRNSTLSALMPCES-SSQVSNSTNG 625 Query: 637378 IEP 637370 IEP Sbjct: 626 IEP 628 >ref|NP_046779.1|gpFII Length = 172 Score = 57.0 bits (136), Expect = 3e-06 Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 9/174 (5%) Frame = +3 Query: 418623 MALPRTIRNFNAFVDGVSYFGIVDEGKLPAVKIQTEAHRGAGMDGPIGIDVGM--EALAS 418796 MA+PR ++ N F++G SY G+ LP + + E +RGAGM+G +D+G+ +AL+ Sbjct: 1 MAMPRKLKLMNVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMNGSAPVDLGLDDDALSM 60 Query: 418797 KMSFSEWVPAIVKKLGRQE-------RFVFRPAMANPSDFGAVPIVATLSGLITVSEPGD 418955 + S + +++ +L RF + + AV +V + G + G+ Sbjct: 61 EWSLGGFPDSVIWELYAATGVDAVPIRFAGSYQRDDTGETVAVEVV--MRGRQKEIDTGE 118 Query: 418956 LKPGTPSKLKISMDVRSYRXXXXXXXXXXXXXPNAKRVIGGQDQLAEMRRAMGI 419117 K G ++ KIS+ +R N + G D+L + RR +G+ Sbjct: 119 GKQGEDTESKISVVCTYFRLTMDGKELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 >ref|NP_878221.1|gpFII Length = 172 Score = 57.0 bits (136), Expect = 3e-06 Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 9/174 (5%) Frame = +3 Query: 418623 MALPRTIRNFNAFVDGVSYFGIVDEGKLPAVKIQTEAHRGAGMDGPIGIDVGM--EALAS 418796 MA+PR ++ N F++G SY G+ LP + + E +RGAGM+G +D+G+ +AL+ Sbjct: 1 MAMPRKLKLMNVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMNGSAPVDLGLDDDALSM 60 Query: 418797 KMSFSEWVPAIVKKLGRQE-------RFVFRPAMANPSDFGAVPIVATLSGLITVSEPGD 418955 + S + +++ +L RF + + AV +V + G + G+ Sbjct: 61 EWSLGGFPDSVIWELYAATGVDAVPIRFAGSYQRDDTGETVAVEVV--MRGRQKEIDTGE 118 Query: 418956 LKPGTPSKLKISMDVRSYRXXXXXXXXXXXXXPNAKRVIGGQDQLAEMRRAMGI 419117 K G ++ KIS+ +R N + G D+L + RR +G+ Sbjct: 119 GKQGEDTESKISVVCTYFRLTMDGKELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 >ref|NP_050999.1|P38 Length = 390 Score = 57.0 bits (136), Expect = 3e-06 Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 16/232 (6%) Frame = +1 Query: 923131 KTVSVGTVWTELGHLRTCLLWAAKRGL--IQVAPHIERPAKPAPRDRYLTHAEVSRLMEA 923304 K VS+ T L L++ ++ +A+R I+ +P I+ P+ R R+L E RL+ Sbjct: 139 KEVSIATKAKHLALLKS-MMKSAERDWKWIEKSPVIKVPSAREKRIRWLEPDEAERLIN- 196 Query: 923305 ECEPHIKLAITVLLTTAARVGAVLELTWDRVDLERGQIRLRVEAEGPRKGRATVPINNXX 923484 EC ++ + L T R ++ L W ++D++R +E E + G+A N Sbjct: 197 ECPEPLRSTVEFALATGLRRSNIINLAWSQIDMQRKV--AWIEPENSKSGKAIGVALNDT 254 Query: 923485 XXXXXXXXXXXXXDHVIEWA-------GGPVKCIRK-------GFLRAVSNAGLLDVTLH 923622 V G IRK + A+ AG+ + H Sbjct: 255 ACCILTRQLGNHQKWVFVHTMSAKRSDGSQTNSIRKMRVDSNTAWRAALKRAGIENFRFH 314 Query: 923623 TLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAADALE 923778 LRHT A + ++GVP+ + + G +V++ YA + HL + A ++ Sbjct: 315 DLRHTWASWLIQSGVPLSVLQEMGGWESVEMVRR-YAHLASNHLTEHAKQID 365 >ref|NP_818425.1|gp127 Length = 247 Score = 56.2 bits (134), Expect = 4e-06 Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 1/154 (0%) Frame = -1 Query: 887078 EQAGFDVAAAVEIDPVHCAVHKFNFPDTAVIPRSVVGLTAEEIRESAGIGNRPIDCVFGG 886899 ++AG A VEID + ++PD AV + ++ +++R + R I + GG Sbjct: 20 QRAGAKTVANVEIDKNCRQILARHYPD-AVQFDDIKNVSGDDLRSVGFVPERGI--LTGG 76 Query: 886898 PPCQGFSLIGHRA-LEDPRNSXXXXXXXXXXXLDARTFVFENVKGLTVGSHRTFLSELVA 886722 PCQ S G A L R+ L + F+ ENV L + +V Sbjct: 77 FPCQDISAAGRGAGLAGERSGLFWEIVRLLNELHPKWFILENVPRLLSIHGGRDMGTVVG 136 Query: 886721 AFGMAGYDVRLPWKVLDAADYGTPQHRQRLFLIG 886620 A +GY L W+VLDA G PQ R+R+F++G Sbjct: 137 ALAGSGYG--LAWRVLDAQFTGVPQRRRRIFIVG 168 >ref|NP_046897.1|gp2 Length = 640 Score = 55.8 bits (133), Expect = 6e-06 Identities = 103/469 (21%), Positives = 178/469 (37%), Gaps = 20/469 (4%) Frame = -1 Query: 909350 VTVTEAAERHMRVPVQ-----GNW--VPFDRAVTPYTVEPADMTQSRRFKAVVFLGPSQS 909192 +T E A+ H +P + G W +PF RA+ + S + V + ++ Sbjct: 28 MTAVEWADAHYYLPKESAYQEGRWETLPFQRAIM-------NAMGSDYIRIVNVIKSARV 80 Query: 909191 GKSQMMQSVSAHAVTCAPGPVQVIHMTKTDADAWVEEKLDPTILNSPALRERL---GTGR 909021 G S+M+ V A+ + + T DAD +++ ++PTI + P+L G Sbjct: 81 GYSKMLLGVIAYFIEHKQRNELLWLPTDGDADNFMKSHVEPTIRDVPSLLSLAPWYGKKH 140 Query: 909020 DDSTFSRKRFKGMRLTIGYPVPNQLSSRSQR--LVMLTDYDHMPQKLGPKDSPEGSPFGM 908847 D+T S KRF R G+ ++++ R V + YD + EGSP + Sbjct: 141 RDNTLSMKRFTNGR---GFWCLGGKAAKNYREKSVDVVGYDELAA-FDADIEKEGSPTFL 196 Query: 908846 ALQRIRTFMSRGCVLAETSPAFPVDPNADWAPHAGHPHMLPPATAGLVPIYNEGTRGRWY 908667 +RI + + T A +GH R++ Sbjct: 197 GDKRIEGSVWPKSIRGSTPKLRGTCQIERAAKESGHFM-------------------RFH 237 Query: 908666 WECPDCGDLFEPRFDRLHYDADLDPGAAGEQAMME-----CPHCGTLIAHRHKVGLNRAA 908502 CP CG+ +F D D G E E C H +I +H++ + A Sbjct: 238 VACPHCGEEQYLKFG----DRDTPFGFKWEPEQAETVYYLCEHNACVIK-QHELDFSNAR 292 Query: 908501 L--EGRGGWLHEGRHIEANGRRALVRIDDPDIRRTPIASYSLNGAAAAFASWEELVQRYE 908328 E G W +G ++ ID P+ ++ + A + F +W ++V+ + Sbjct: 293 YICELTGIWTRDGLRWFSSSN---AEIDPPES-----VTFHIWTAYSPFTTWVQIVKDW- 343 Query: 908327 TERRRFEALGDDTDFARVHYTDIGVPYRRPEAEEEGALTAAQIREHMRSQERRVAPAWTR 908148 F+ GD T +G + + A A+ +EH + P Sbjct: 344 -----FKTKGDTGKRKTFVNTTLGETWEAKIGDRPDADVLAERKEHFDA----AVPERVA 394 Query: 908147 FVTVSIDVQGNRFEVLVMAWGAQGERMPIDR-FAVAQPPDHAPRAKGDD 908004 ++T ID Q +R+E+ V WG E IDR + + D + A+ D+ Sbjct: 395 YLTAGIDSQLDRYEMRVWGWGPGEESWLIDRQIIMGRHDDESTLARVDE 443 >ref|NP_944991.1|putative ribonucleoside triphosphate reductase alpha chain Length = 744 Score = 55.8 bits (133), Expect = 6e-06 Identities = 64/281 (22%), Positives = 111/281 (39%), Gaps = 39/281 (13%) Frame = -2 Query: 638068 GKVYRTLQARDLWNRIMRSTYDFAEPGVIFIDRINQMNNLAYCETISATNPCGEQPLPPY 637889 G +R ++AR++ ++ Y F + N + + E + +N C E LP Y Sbjct: 376 GVKHRRVKAREIAKLFIQQRYATGRVYPFFTNNAN--THTPFKEPLKMSNLCMEIVLPVY 433 Query: 637888 G--------------------ACLLGSVNLARLVAKPFSXXXXXXXXXXXXXXXXAVRMM 637769 G C L S+ R+ ++ + M+ Sbjct: 434 GFEKETDLYRDDAVKEDGEVALCFLASLVAGRISEDEYADVAYYA-----------LAMV 482 Query: 637768 DNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYGSEEAAARTEAWMKAIAR 637589 D+V+D +P P Q +R +G+G+T +A L + Y S A +T+ A Sbjct: 483 DSVIDLMDYPYPSMRNHVQKRRSVGIGLTNVAHYLAKNYVNYSSR--AGKTKLHELAEMH 540 Query: 637588 SAYL--ASADLAREKGAFPLFEADKY----------------LGSGSLTHMDEDVRAAIR 637463 S YL AS LA+E+G + KY L + +D+ I+ Sbjct: 541 SYYLHEASLRLAKERGVPEYMKFTKYPEGWVPPKTANKKIDEKHDAKLRYDWDDLAQRIK 600 Query: 637462 TH-GIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRK 637343 + GIRN++L + P + SL A N ++G+ P+ + +K Sbjct: 601 ENGGIRNSVLEAYMPNESSSL-ATNTTNGLYPIRDFILTKK 640 >ref|NP_758933.1|ORF41 Length = 94 Score = 55.5 bits (132), Expect = 7e-06 Identities = 28/73 (38%), Positives = 40/73 (54%) Frame = +2 Query: 419177 GDIASVTVRKPDVGSLRGLKLTDILQMDVTALSRLLPRITEPALLPDEVAALDPADFLGL 419356 G + + +RKP G LRGLKL D++QMD A++ L+PRI L+PAD L + Sbjct: 19 GKMKHLALRKPMPGDLRGLKLLDVIQMDAGAVANLVPRIALNGFTAQHFYQLEPADLLEV 78 Query: 419357 SAAVVGFFATAEM 419395 V FF ++ Sbjct: 79 MTEVATFFTKEQL 91 >ref|NP_037686.1|integrase Length = 357 Score = 55.5 bits (132), Expect = 7e-06 Identities = 55/240 (22%), Positives = 90/240 (37%), Gaps = 13/240 (5%) Frame = -3 Query: 736023 TLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRGEFLDWRDR 735844 TL A + Y+ + + T Y IR I D P+ ++ V + Sbjct: 75 TLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVAAMLNTY--- 131 Query: 735843 LAQKSKRSADYAFSVLARILSWAHDRRKIPVNPCEKPGRLYTGSRADSIWTEAQIAAFLA 735664 +A+ SA S L + A + NP + R + +A + A Sbjct: 132 VAEGKSASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVAIYHA 191 Query: 735663 VAPRPV--RLPFLLAIWTGQRQADILQLTWTAYDGQAIRLRQSKTGRHMLIPVAQ----- 735505 P P+ RL LA+ TGQR D+ ++ W+ + + + QSKTG + IP+ Sbjct: 192 AEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTIDAL 251 Query: 735504 --PLXXXXXXXXXXXRTLTICETSRGQPWTSDGFKTSFGKAQASAGI----EGVTFHDLR 735343 L + TI + P + F KA+ ++G+ TFH+LR Sbjct: 252 NISLADTLQQCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPPTFHELR 311 >ref|NP_612832.1|putative portal protein Length = 422 Score = 55.5 bits (132), Expect = 7e-06 Identities = 37/146 (25%), Positives = 64/146 (43%) Frame = +3 Query: 759504 ILGEGEDVKTLDMKAADQELLGSRKFDREQIAAIYRVPPAKLQMMEYGVKANGEQQAIDY 759683 +L G + + + AD + L + K + ++AA + + L +E N +Q D+ Sbjct: 258 LLPFGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLERATFNNLTEQQKDF 317 Query: 759684 LTDCLLHWAKQVEDQLALGVLTEAERRAGLFFRHDFGALLRPTTRERYEALAKAVGGPIL 759863 L E ++ + ++ E + + +LR + RYEA + G + Sbjct: 318 YVTTLQSSLTVYEQEIQDKLFSQYETLQDVKAEFNVDTILRSDIKTRYEAYRIGIQGGFI 377 Query: 759864 TPNEARRIDGYDPIEGGDRLNPAPNM 759941 NEARR + P+EGGDRL NM Sbjct: 378 EANEARRRENLPPVEGGDRLLVNGNM 403 >ref|NP_932465.1|hypothetical protein Length = 570 Score = 55.1 bits (131), Expect = 1e-05 Identities = 104/452 (23%), Positives = 167/452 (36%), Gaps = 26/452 (5%) Frame = -2 Query: 638629 SVEDTWRRIARALAEVEAEPALWEDRFYSALEDFRFLPXXXXXXXXXXXXXXTLFNCFVM 638450 +V +RR+A LA+ + P E+R++ L + L +C Sbjct: 45 TVRGAFRRVASTLAKHDIRPEA-EERYFDLLWSGK-LAMATPVFCNTGTDRGMPVSC-AG 101 Query: 638449 GTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDA 638270 V DS+ ++ E A+ + G G IRPRG+++ A G + D + Sbjct: 102 SYVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGSDISTSHNKADGLVPVFDNF-V 160 Query: 638269 MCRTIMSAGSRRGAMMATMRCDHPD---IESFIEAKKDPARLRMFNLSVLVTDAFMEAVK 638099 +T ++A RRG + H D ++ ++ K+PA Sbjct: 161 NTKTKVAAAGRRGEWAGYVDFSHGDFWELQGYV--LKNPA-------------------S 199 Query: 638098 ADGPWELTFGGKVYRTLQARD-----LWNRIMRSTYDFAEPGVIFIDRINQMNNLAYCET 637934 A W F + Y L+ARD WN +M Y A G ++ + N LA Sbjct: 200 AHVGW--VFEKEDYEKLKARDPEYMARWNELM---YMRARTGKGYMWKNWIANELAPQAI 254 Query: 637933 ------ISATNPCGEQPLPPYG----ACLLGSVNLARLVAKPFSXXXXXXXXXXXXXXXX 637784 I ++ C E LP C+L S+N++ Sbjct: 255 KNSGIPIRSSQLCTEIALPSDDMHTFTCILSSLNVS------------LWDEITADDIKW 302 Query: 637783 AVRMMDNVV--------DASRFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYGSEEA 637628 +VR +D+V + S L + R + R +GLG G L M + + S A Sbjct: 303 SVRFLDSVCSEFLAKAKELSYDTLHKAIRFTEKARALGLGTLGFHTYLQMNDIAFESGAA 362 Query: 637627 AARTEAWMKAIARSAYLASADLAREKGAFPLFEADKYLGSGSLTHMDEDVRAAIRTHGIR 637448 I ++A S +LA E G E + G+G +R Sbjct: 363 HILNNQLYAEIKKAAEEGSRELAEEYG-----EPEWCKGTG-----------------MR 400 Query: 637447 NALLTSIAPTGTISLYAGNVSSGIEPVFAYAY 637352 NA L +IAP + +L AG VS G+EP+ ++ Sbjct: 401 NATLITIAPNMSSALLAGGVSQGVEPLVCNSF 432 >ref|NP_818228.1|gp169 Length = 358 Score = 54.7 bits (130), Expect = 1e-05 Identities = 70/270 (25%), Positives = 115/270 (42%), Gaps = 24/270 (8%) Frame = +1 Query: 303487 RPMETGTRLPICSISKQFTCGALLDTLGD-TAAYDARVAEFLPQF-EGPLPTLRQLCDNQ 303660 +PM + S++K T A+L + + D V +++ Q G T++Q+ + Sbjct: 52 KPMSFDAKFRAASVTKTLTAMAILREVDKGKISLDDVVDKYVAQIPNGRQLTVKQVLMMR 111 Query: 303661 SGLRDYW-----ALTVLQGAEAAQTFRREDALPLIARMKTGHFPPGTAYSYCNCNFRIVS 303825 SGL +Y ALT L TF E A+ + R K F PG Y YC N+ +++ Sbjct: 112 SGLAEYQTDIIIALTFL-AFPTWPTFSPEGAMQAVRRNKAV-FKPGAQYMYCGSNYHLLA 169 Query: 303826 EILES-ETGRALRDLYAERIFGPAGMRTAELTSDTRHPADEVVGYEGSDAVGFFP--ADN 303996 ILE G+ + + + + P GM + P EV GY G F ++N Sbjct: 170 LILEKVNGGKGWKRILMDDLVKPLGMTSTSFPDGATIPQPEVKGY----TTGVFKKWSEN 225 Query: 303997 G----IFWIGDAGISASLQDMLAYESWIDA----------TRNDENSIYRRISVPPAYVC 304134 G F G+ ++ DM W A TR ++S++ SVP + Sbjct: 226 GKVNANFHGPAGGMVTTMGDM---HKWATAMRDGVFLKPETRQLQHSLFS--SVP--WTD 278 Query: 304135 GTPASYGFGLSHETVAGVKVTGHGGALRGF 304224 P ++G+G+ ++ K GH G + G+ Sbjct: 279 EGPTAFGYGMG--LLSFGKWFGHDGWIPGY 306 >ref|NP_943925.1|NrdA-B aerobic NDP reductase large subunit Length = 323 Score = 54.7 bits (130), Expect = 1e-05 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 18/155 (11%) Frame = -2 Query: 637780 VRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYGSEEAAARTEAWMK 637601 VR +DN++D +P+ QA A+ +R +G+GVT A L + Y S A M+ Sbjct: 55 VRALDNLLDYQDYPVV-QALAAKKRRALGMGVTNFAYFLAKNFVNYSSGNANKLVHRTME 113 Query: 637600 AIARSAYLASADLAREKGAFPLFEADKYLGSGSLTHMD------------------EDVR 637475 + + +AS +LA+E+GA K+ + L +D E +R Sbjct: 114 MMQFANLVASMELAKERGANEWHHKTKW--ADGLLPIDWYNKNVDNIVPNDLKMDWEWLR 171 Query: 637474 AAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEP 637370 A I+ HG+RN L++ P + S N ++GIEP Sbjct: 172 AEIKQHGLRNDTLSAFMPCESSSQIT-NSTNGIEP 205 >ref|YP_006528.1|ParA Length = 398 Score = 54.3 bits (129), Expect = 2e-05 Identities = 59/228 (25%), Positives = 94/228 (41%), Gaps = 9/228 (3%) Frame = -2 Query: 940240 YRPKGLPAKVVAVANFKGGVGKTSTAAHLAMSAA------LDGYRVLVIDLDSQGSMTSI 940079 YR + A V+ ++N KGGV KT + LA + ++ R+LVIDLD Q S T Sbjct: 101 YRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMF 160 Query: 940078 MGGRVADEWQTVFPLLAKDYALHVREENEVREAKGEGPLPLDETLTEALKITAADVVQKT 939899 + + + + + +N RE E L E + + Sbjct: 161 LSHKHSIG-------IVNATSAQAMLQNVSRE----------ELLEEFIVPSVV------ 197 Query: 939898 HWPNIDLIGAQLNLYWAEFQVPVWRMMLRRWPLWDALTGFLGR---EGLLRDYDIILLDT 939728 P +D++ A ++ F WR + + L + L DYD IL+D+ Sbjct: 198 --PGVDVMPASID---DAFIASDWRELCNEHLPGQNIHAVLKENVIDKLKSDYDFILVDS 252 Query: 939727 PPALGYLTINALAAADILLVPLGASFLEFDSTGRFFDMLYSTFASIED 939584 P L NALA+A+IL PL + ++F S+ ++ L I D Sbjct: 253 GPHLDAFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISD 300 >ref|NP_839871.1|FII Length = 172 Score = 54.3 bits (129), Expect = 2e-05 Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 12/177 (6%) Frame = +3 Query: 418623 MALPRTIRNFNAFVDGVSYFGIVDEGKLPAVKIQTEAHRGAGMDGPIGIDVGM--EALAS 418796 MA+PR ++ N F++G SY G+ LP + + E +RGAGM+G +D+G+ +AL+ Sbjct: 1 MAMPRKLKLMNVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMNGSAPVDLGLDDDALSM 60 Query: 418797 KMSFSEWVPAIVKKLGRQERFVFRPAMANPSDFG----------AVPIVATLSGLITVSE 418946 + S + +++ +L + A A P F V + + G + Sbjct: 61 EWSLGGFPDSVIWEL-----YAATSADAVPIRFAGSYQRDDTGETVAVEVVMRGRQKEVD 115 Query: 418947 PGDLKPGTPSKLKISMDVRSYRXXXXXXXXXXXXXPNAKRVIGGQDQLAEMRRAMGI 419117 G+ K G ++ K+ + ++ N + G D+L + RR +G+ Sbjct: 116 TGEGKQGEDTESKLPVICTYFKLTMDGKELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 >ref|NP_037664.1|head portal protein Length = 424 Score = 53.9 bits (128), Expect = 2e-05 Identities = 57/227 (25%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Frame = +3 Query: 759264 MIHLRYMAEDGWTGRSPLEVAAESVGLALAGQEXXXXXXXXXXXXXXIRLRDDYEDDEXX 759443 + HL+ G G SP+ A +S G+A+A ++ I E Sbjct: 180 IFHLKGFGFTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQI-----LSTGEKV 234 Query: 759444 XXXXXXXXXXXXXPEVEGFP------ILGEGEDVKTLDMKAADQELLGSRKFDREQIAAI 759605 E+ G P IL G + + D E++ SRKF ++A Sbjct: 235 LTEQQRSQVEENFKEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARF 294 Query: 759606 YRVPPAKLQMMEYGVK--ANGEQQAIDYLTDCLLHWAKQVEDQLALGVLTEAERRAGLFF 759779 + VPP + +E + EQQ + +L L + + E+ + L A+ + Sbjct: 295 FGVPPHLVGDVEKSTSWGSGIEQQNLGFLQYTLQPYISRWENSIQRW-LIPAKDVGRIHA 353 Query: 759780 RHDFGALLRPTTRERYEALAKAVG-GPILTPNEARRIDGYDPIEGGD 759917 H+ LLR + R A KA+G + T NE RR D P+ GGD Sbjct: 354 EHNLDGLLRGDSASR-AAFMKAMGEAGLRTINEMRRTDNLPPLPGGD 399 >ref|NP_037699.1|portal protein Length = 424 Score = 53.9 bits (128), Expect = 2e-05 Identities = 56/227 (24%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Frame = +3 Query: 759264 MIHLRYMAEDGWTGRSPLEVAAESVGLALAGQEXXXXXXXXXXXXXXIRLRDDYEDDEXX 759443 + HL+ G G SP+ A +S G+A+A ++ I E Sbjct: 180 IFHLKGFGFTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQI-----LSTGEKV 234 Query: 759444 XXXXXXXXXXXXXPEVEGFP------ILGEGEDVKTLDMKAADQELLGSRKFDREQIAAI 759605 E+ G P IL G + + D E++ SRKF ++A Sbjct: 235 LTEQQRSQVEENFKEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARF 294 Query: 759606 YRVPPAKLQMMEYGVK--ANGEQQAIDYLTDCLLHWAKQVEDQLALGVLTEAERRAGLFF 759779 + VPP + +E + EQQ + +L L + + E+ + ++ + L Sbjct: 295 FGVPPHLVGDVEKSTSWGSGIEQQNLGFLQYTLQPYISRWENSIQRWLIPSKD-VGRLHA 353 Query: 759780 RHDFGALLRPTTRERYEALAKAVG-GPILTPNEARRIDGYDPIEGGD 759917 H+ LLR + R A KA+G + T NE RR D P+ GGD Sbjct: 354 EHNLDGLLRGDSASR-AAFMKAMGESGLRTINEMRRTDNMPPLPGGD 399 >ref|NP_037720.1|integrase Length = 356 Score = 53.1 bits (126), Expect = 4e-05 Identities = 54/240 (22%), Positives = 94/240 (39%), Gaps = 13/240 (5%) Frame = -3 Query: 736023 TLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRGEFLDWRDR 735844 TL + + Y+K A + + T Y+ I+ I D P++ + + + D Sbjct: 75 TLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYID- 133 Query: 735843 LAQKSKRSADYAFSVLARILSWAHDRRKIPVNPCEKPGRLYTGSRADSIWTEAQIAAFLA 735664 + SA S L+ A I NP + R + + + + A Sbjct: 134 --EGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQA 191 Query: 735663 VAPRP--VRLPFLLAIWTGQRQADILQLTWTAYDGQAIRLRQSKTGRHMLIPVAQPLXXX 735490 P +RL LA+ TGQR D+ ++ W+ + + QSKTG + IP A + Sbjct: 192 AESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHVDAL 251 Query: 735489 XXXXXXXXRTL-------TICETSRGQPWTSDGFKTSFGKAQASAGI----EGVTFHDLR 735343 TI ++R +P +S F +A+ ++G+ + TFH+LR Sbjct: 252 GISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELR 311 >ref|NP_878205.1|gpX Length = 67 Score = 52.4 bits (124), Expect = 6e-05 Identities = 30/61 (49%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Frame = +1 Query: 422344 LAGDMLDAICKARLG-SERHVPAVLAANPHLAALGSVYPAGVLITLPEVAEPVATGQIRL 422520 L GD LDAIC G +E V AVLAANP LA LG+V P G + LP+V + L Sbjct: 6 LQGDTLDAICVRYYGRTEGVVEAVLAANPGLAELGAVLPHGTAVELPDVQTAPVAETVNL 65 Query: 422521 W 422523 W Sbjct: 66 W 66 >ref|NP_818053.1|gp80 Length = 252 Score = 52.0 bits (123), Expect = 8e-05 Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 2/162 (1%) Frame = -1 Query: 887078 EQAGFDVAAAVEIDPVHCAVHKFNFPDTAVIPRSVVGLTAEEIRESAGIGNRP-IDCVFG 886902 E+AG V VEI+P + ++P +PR T E ES RP +D + G Sbjct: 18 ERAGMTVVGQVEINPYCRQILAKHWPH---VPRHDDVRTTVEWWESE---ERPRVDLICG 71 Query: 886901 GPPCQGFSLIGHR-ALEDPRNSXXXXXXXXXXXLDARTFVFENVKGLTVGSHRTFLSELV 886725 G PCQ S G R + P++S + R + ENV L V T L++L Sbjct: 72 GFPCQDISNAGARKGITGPKSSLWGGMLHTVRNIRPRYVLIENVAALLVRGVDTVLADLH 131 Query: 886724 AAFGMAGYDVRLPWKVLDAADYGTPQHRQRLFLIGAKRGETL 886599 + G++ W VL A G P R+RLF++ + L Sbjct: 132 ES----GFNAE--WSVLSACAMGAPHTRERLFILAYPNNQRL 167 >ref|NP_665964.1|putative plasmid partitioning protein Soj Length = 256 Score = 51.6 bits (122), Expect = 1e-04 Identities = 56/208 (26%), Positives = 90/208 (43%) Frame = -2 Query: 940210 VAVANFKGGVGKTSTAAHLAMSAALDGYRVLVIDLDSQGSMTSIMGGRVADEWQTVFPLL 940031 + V N KGG GKT+T ++A + G VLVIDLD QG T +G ++ ++ Sbjct: 3 IGVTNQKGGAGKTTTTLNVAGALNQLGNDVLVIDLDPQGHATEGLG------FEDLYDDP 56 Query: 940030 AKDYALHVREENEVREAKGEGPLPLDETLTEALKITAADVVQKTHWPNIDLIGAQLNLYW 939851 +D V E E + L++ + E ++ +H I+ A N+ Sbjct: 57 ERDSLFDVLPELERMD-------ELEQLVVEHQEVDCV----PSHETMINAEDALANVMK 105 Query: 939850 AEFQVPVWRMMLRRWPLWDALTGFLGREGLLRDYDIILLDTPPALGYLTINALAAADILL 939671 E ++ + L D G +D +L+D PP LG LT NA+ A +L Sbjct: 106 REERLEM---------LLDDADG---------RWDYVLVDCPPNLGVLTDNAIVATGNVL 147 Query: 939670 VPLGASFLEFDSTGRFFDMLYSTFASIE 939587 +P A ++ R ++L+ SIE Sbjct: 148 IPAQAK----STSIRAIELLFKQLRSIE 171 >ref|NP_817998.1|gp25 Length = 941 Score = 50.8 bits (120), Expect = 2e-04 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 8/175 (4%) Frame = +1 Query: 303778 PGTAYSYCNCNFRIVSEILESETGRALRDLYAERIFGPAGMRTAELTSDTRHPADEVVGY 303957 PGT + Y N N+ I+S +L + GR +RD+ E I P G+ + + PA VG+ Sbjct: 225 PGTGFEYVNANWFIISLVLRAVRGRHIRDIITEDIITPLGLTETSWPATAKMPAPYAVGH 284 Query: 303958 EGSDAVGFFPADNGIFWIGDAG-ISASLQDMLAYESWI----DATRNDENSIYRRISVPP 304122 +G +G + + AG + ++L D+ W+ DAT R S+ Sbjct: 285 DG--LLGGITTETHPTYPHCAGSLVSTLTDL---HKWVGHMRDATLLTPEMAELRDSMFC 339 Query: 304123 AYVCGT---PASYGFGLSHETVAGVKVTGHGGALRGFRAQRFHAADERLSVVVIF 304278 G+ P YG+GL+ K GH G+ G+ + E S++V + Sbjct: 340 PIPSGSPYAPPEYGYGLAWYDYGDWK--GHAGSWVGYECSPMY-HKESGSIIVCY 391 >ref|NP_046778.1|gpFI Length = 396 Score = 50.8 bits (120), Expect = 2e-04 Identities = 24/53 (45%), Positives = 30/53 (56%) Frame = +1 Query: 418447 WIDPELNTEATMKAGKLFLDFDIEPPAPLEHLTLQAHRNGDYYEELVLSVTGN 418605 W E N T+KAGKL++D+D P PLE+LTL+ Y LV SV N Sbjct: 344 WFSEESNDAETLKAGKLYIDYDYTPVPPLENLTLRQRITDKYLANLVTSVNSN 396 >ref|NP_046763.1|gpX Length = 67 Score = 50.8 bits (120), Expect = 2e-04 Identities = 29/61 (47%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Frame = +1 Query: 422344 LAGDMLDAICKARLG-SERHVPAVLAANPHLAALGSVYPAGVLITLPEVAEPVATGQIRL 422520 L GD LDAIC G +E V VLAANP LA LG+V P G + LP+V + L Sbjct: 6 LQGDTLDAICVRYYGRTEGVVETVLAANPGLAELGAVLPHGTAVELPDVQTAPVAETVNL 65 Query: 422521 W 422523 W Sbjct: 66 W 66 >ref|NP_052256.1|Orf23; P2 X homolog; tail protein Length = 67 Score = 50.8 bits (120), Expect = 2e-04 Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Frame = +1 Query: 422338 RTLAGDMLDAICKARLG-SERHVPAVLAANPHLAALGSVYPAGVLITLPEVAEPVATGQI 422514 R++ GD LD IC G +E V VL ANP L+ LG + P G I LP+VA T I Sbjct: 4 RSMQGDTLDTICARYYGRTEGVVETVLQANPGLSELGVILPNGTEIDLPDVASSPVTKTI 63 Query: 422515 RLW 422523 LW Sbjct: 64 NLW 66 >ref|NP_878220.1|gpFI Length = 396 Score = 50.8 bits (120), Expect = 2e-04 Identities = 24/53 (45%), Positives = 30/53 (56%) Frame = +1 Query: 418447 WIDPELNTEATMKAGKLFLDFDIEPPAPLEHLTLQAHRNGDYYEELVLSVTGN 418605 W E N T+KAGKL++D+D P PLE+LTL+ Y LV SV N Sbjct: 344 WFSEESNDAETLKAGKLYIDYDYTPVPPLENLTLRQRITDKYLANLVTSVNSN 396 >ref|NP_839870.1|gpFI Length = 396 Score = 50.8 bits (120), Expect = 2e-04 Identities = 24/53 (45%), Positives = 30/53 (56%) Frame = +1 Query: 418447 WIDPELNTEATMKAGKLFLDFDIEPPAPLEHLTLQAHRNGDYYEELVLSVTGN 418605 W E N T+KAGKL++D+D P PLE+LTL+ Y LV SV N Sbjct: 344 WFSEESNDAETLKAGKLYIDYDYTPVPPLENLTLRQRITSRYLASLVTSVNSN 396 >ref|NP_758949.1|ORF58 Length = 210 Score = 50.4 bits (119), Expect = 2e-04 Identities = 22/45 (48%), Positives = 33/45 (73%) Frame = -2 Query: 940219 AKVVAVANFKGGVGKTSTAAHLAMSAALDGYRVLVIDLDSQGSMT 940085 AK++A+ N KGG GKT+ + ++A DG++VL++DLD QGS T Sbjct: 20 AKLIAILNQKGGAGKTTISTNVASQLHADGHKVLLVDLDPQGSAT 64 >ref|NP_818239.1|gp188 Length = 318 Score = 50.4 bits (119), Expect = 2e-04 Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 5/199 (2%) Frame = +2 Query: 319082 LVSDEVINGFGRTGARWGCEKFGFTPDILVTSKQLTSSYMPLAAVLMTDKVYQTIADHTE 319261 +V+DE GFGR G WG + +GFTPD ++ + L V+ ++ Sbjct: 139 VVADESATGFGRLGRIWGHQAYGFTPDAIIFGGP-AGGGLTLGGVIGPAEL--------- 188 Query: 319262 TLGTLGHGFTG--SGHPVATAVGLENLTVIEERDLMGNAARLERPFQDGLRAFRD--NPL 319429 L F G +G P+A A G L I +L+ + F + LRA D Sbjct: 189 ----LDDAFVGPMAGAPLACATGAATLAAINP-ELLEHVREEGVTFGERLRALVDRFGDY 243 Query: 319430 VGEVRGTGLIAAIEMVADRATKRSFEPLGKVGXXXXXXXXEEGLL-CRALGDTLALCPPL 319606 + + G+GL ++ + + R FE + GLL +G T+ + P L Sbjct: 244 LADTAGSGLYHTLDFRSPQLA-RKFE----------VSTRQHGLLTAPPVGSTVVVTPTL 292 Query: 319607 IVTEADVGRILERMGRALD 319663 I +E ++ R +E + L+ Sbjct: 293 IASERELARGVELIAETLE 311 Score = 46.2 bits (108), Expect = 0.005 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 8/201 (3%) Frame = -1 Query: 616145 ISDEVVTGFGRCGE-WFASEKVFGVVPDIITFAKGVTSGYVPLGGL-----AISEAVLAR 615984 ++DE TGFGR G W + +G PD I F G G + LGG+ + +A + Sbjct: 140 VADESATGFGRLGRIW--GHQAYGFTPDAIIFG-GPAGGGLTLGGVIGPAELLDDAFVGP 196 Query: 615983 ISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLRDL 615804 ++G P+ACA A + + E +++ RE F L +L D Sbjct: 197 MAG----------------APLACATGAATLAAINPE-LLEHVREEGVTFGERLRALVDR 239 Query: 615803 PG--VAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLGDLCVIS 615630 G +A+T GL + D + A ++ R L L P+G V++ Sbjct: 240 FGDYLADTAGSGLYHTL---------DFRSPQLARKFEVSTRQHGL-LTAPPVGSTVVVT 289 Query: 615629 PPLIISRAQIDEMVAIMRQAI 615567 P LI S ++ V ++ + + Sbjct: 290 PTLIASERELARGVELIAETL 310 >ref|NP_818403.1|gp105 Length = 266 Score = 50.1 bits (118), Expect = 3e-04 Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 4/124 (3%) Frame = -2 Query: 794986 RRAHVFLPAGDLGREAILFIHGGGWAFCSAATHEGAARQLAVETGAAVVTFDYRLAPEHP 794807 ++ ++LP +FI GG W A V+ G V DYR AP++ Sbjct: 25 QKLDIWLPESPENAPVFMFIPGGAWTIGDRRGQGYAIMSHLVQQGWICVAIDYRTAPKNH 84 Query: 794806 YPAGLEDCLAVWAGREAIL----AGRRWSVAGDSAGAHLAVALMFRLNGRDLPATGLLFY 794639 +PA ED A + A + G +V G SAG H+A L P + Y Sbjct: 85 WPAPFEDVSAAFHWVRANIHQYGGGDFLAVGGASAGGHMASLLGLTDWSFSKPDAVVSLY 144 Query: 794638 GVFD 794627 GV+D Sbjct: 145 GVYD 148 >ref|NP_818314.1|gp13 Length = 409 Score = 50.1 bits (118), Expect = 3e-04 Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 4/218 (1%) Frame = +3 Query: 759276 RYMAEDGWTGRSPLEVAAESVGLALAGQEXXXXXXXXXXXXXXIRLRD-DYEDDEXXXXX 759452 RY G SP+E AA ++GL LA + I D D D+ Sbjct: 169 RYPVAGCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSDADLTPDQVKQTQ 228 Query: 759453 XXXXXXXXXXPEVEGFP-ILGEGEDVKTLDMKAADQELLGSRKFDREQIAAIYRVPPAKL 759629 P ++ G +++ + + + L +R F R +IA +R+PP + Sbjct: 229 KQWIQSHHN----RRLPAVMSAGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMI 284 Query: 759630 QMMEYGVK--ANGEQQAIDYLTDCLLHWAKQVEDQLALGVLTEAERRAGLFFRHDFGALL 759803 +E E+Q I+++ LL W + +E L + G F + + L+ Sbjct: 285 GDVEKSTSWGTGIEEQGINFVRHTLLPWLRCIEQAL------DTFLPRGQFVKFNVDGLM 338 Query: 759804 RPTTRERYEALAKAVGGPILTPNEARRIDGYDPIEGGD 759917 R R+ A + I + NE R + PI GD Sbjct: 339 RGDVTARFTAYQMGLQNGIWSVNEVRAWEDAPPIPEGD 376 >ref|NP_945033.1|gp3 Length = 437 Score = 50.1 bits (118), Expect = 3e-04 Identities = 49/219 (22%), Positives = 80/219 (36%), Gaps = 3/219 (1%) Frame = +3 Query: 759264 MIHLRYMAEDGWTGRSPLEVAAESVGLALAGQEXXXXXXXXXXXXXXIRLRDDYEDDEXX 759443 + H+R + DG G +P++ A E +G + A + + D E Sbjct: 174 VFHVRGFSLDGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTDQILQKEKR 233 Query: 759444 XXXXXXXXXXXXXPEVEGFP-ILGEGEDVKTLDMKAADQELLGSRKFDREQIAAIYRVPP 759620 G +L G + + M D +LL +R F+ E+I YRVPP Sbjct: 234 AEIRTDLAEQFGGAMQAGKTMVLEAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPP 293 Query: 759621 AKLQMMEYGVK--ANGEQQAIDYLTDCLLHWAKQVEDQLALGVLTEAERRAGLFFRHDFG 759794 + E EQQ + +LT L W ++E +L ER + Sbjct: 294 FMVGHSEKSTSWGTGIEQQTLGFLTFTLRPWLTRIEQAARRSLLRPGERDQ-FYAEFSVE 352 Query: 759795 ALLRPTTRERYEALAKAVGGPILTPNEARRIDGYDPIEG 759911 LLR + R + ++T +E R + P+ G Sbjct: 353 GLLRADSAGRAAFYSTMTQNGLMTRDECRAKENLPPMGG 391 >ref|NP_040609.1|integration protein Length = 356 Score = 50.1 bits (118), Expect = 3e-04 Identities = 53/240 (22%), Positives = 93/240 (38%), Gaps = 13/240 (5%) Frame = -3 Query: 736023 TLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRGEFLDWRDR 735844 TL + + Y+K A + + T Y+ I+ I D P++ + + + D Sbjct: 75 TLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYID- 133 Query: 735843 LAQKSKRSADYAFSVLARILSWAHDRRKIPVNPCEKPGRLYTGSRADSIWTEAQIAAFLA 735664 + SA S L+ A I N + R + + + + A Sbjct: 134 --EGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQA 191 Query: 735663 VAPRP--VRLPFLLAIWTGQRQADILQLTWTAYDGQAIRLRQSKTGRHMLIPVAQPLXXX 735490 P +RL LA+ TGQR D+ ++ W+ + + QSKTG + IP A + Sbjct: 192 AESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDAL 251 Query: 735489 XXXXXXXXRTL-------TICETSRGQPWTSDGFKTSFGKAQASAGI----EGVTFHDLR 735343 TI ++R +P +S F +A+ ++G+ + TFH+LR Sbjct: 252 GISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELR 311 >ref|NP_803872.1|ORF306 Length = 779 Score = 49.7 bits (117), Expect = 4e-04 Identities = 77/350 (22%), Positives = 132/350 (37%), Gaps = 33/350 (9%) Frame = -2 Query: 638110 EAVKADGPWELTFGGKVYRTLQARDLWNRIMRSTYDFAEPGVIFIDRINQMNN-LAYCET 637934 E +AD +E T+ + ARDL ++ Y E G I+ +I+++N+ + E Sbjct: 390 EKYEADPKFEKTY-------VNARDLLKSMLVEAY---ETGTIYSAQIDELNHHTPFKEP 439 Query: 637933 ISATNPCGE--QPLPPY-------GACLLGSVNLARLVAKPFSXXXXXXXXXXXXXXXXA 637781 I ++N C E +P PY + G +A + A Sbjct: 440 IYSSNLCLEIAEPTKPYYRMEDLYSSEDHGRGEIATCSLAAIAVDNVPDKQTYEMAAYYA 499 Query: 637780 VRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYGSEEAAARTEAWMK 637601 ++M+D + + + P A A+ + G+G+ GLA + GL+Y S+ A + Sbjct: 500 LKMIDYCILNAEYAFPHLALTAKNRMSAGVGIMGLATHMARAGLKYSSDAGKAEIHFIAE 559 Query: 637600 AIARSAYLASADLAREKGAFPLFEADKYL-------------------GSGSLTHMDEDV 637478 AS +++E+G P K+ G L DE Sbjct: 560 RHMYFLIKASLKISKERGNAPWIHKTKWPEGWTPRKTYNKSVDTIIEGGFEELYPWDELE 619 Query: 637477 RAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRKVLQK--DGSRTEEEV 637304 + GI +++L + P S G+ + Y +R +L K +G+R Sbjct: 620 KEIKENGGIAHSVLAAYMPGEASSKALGSTNG------PYPVRRLILNKTDNGARV---- 669 Query: 637303 VDYAVRLWREQMGDAPLPDYFV--NAQTLAPLEHVRMQAAAQKWIDSSIS 637160 LW GD D +V +A + + + A QKW D +IS Sbjct: 670 ------LWAAPYGD---DDSYVYESAYDIPTKDLIDCYAIIQKWTDQTIS 710 >ref|NP_958063.1|gp8 Length = 67 Score = 49.7 bits (117), Expect = 4e-04 Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = +1 Query: 422338 RTLAGDMLDAICKARLG-SERHVPAVLAANPHLAALGSVYPAGVLITLPEVAEPVATGQI 422514 R++ GD LD IC G +E V VL ANP L+ LG + P G I LP+V T I Sbjct: 4 RSMQGDTLDVICARYYGRTEGIVETVLQANPGLSELGVILPHGTAIELPDVPSSPVTETI 63 Query: 422515 RLW 422523 LW Sbjct: 64 NLW 66 >ref|NP_839856.1|gpX Length = 67 Score = 49.7 bits (117), Expect = 4e-04 Identities = 29/61 (47%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = +1 Query: 422344 LAGDMLDAICKARLG-SERHVPAVLAANPHLAALGSVYPAGVLITLPEVAEPVATGQIRL 422520 L GD LDAIC G +E V VLAANP LA LG V P G + LP+V + L Sbjct: 6 LQGDTLDAICVRYYGRTEGVVETVLAANPGLAELGVVLPHGTAVELPDVQTAPVAETVNL 65 Query: 422521 W 422523 W Sbjct: 66 W 66 >ref|NP_758931.1|ORF39 Length = 386 Score = 49.3 bits (116), Expect = 5e-04 Identities = 19/47 (40%), Positives = 30/47 (63%) Frame = +1 Query: 418447 WIDPELNTEATMKAGKLFLDFDIEPPAPLEHLTLQAHRNGDYYEELV 418587 W+DPELN+ ++ GK++ D+D AP EH+T ++H Y E+V Sbjct: 340 WVDPELNSPDQIQQGKVYFDYDFSAYAPAEHITFRSHMVNGYLTEVV 386 >ref|NP_795429.1|putative integrase Length = 362 Score = 49.3 bits (116), Expect = 5e-04 Identities = 58/259 (22%), Positives = 107/259 (41%), Gaps = 23/259 (8%) Frame = +1 Query: 923035 RSSGNAVLPHFGALRPDQITPEACRSYTKARRKTVSVGTVWTELGHLRTCLLWAAKRGLI 923214 R+ +LP ++ I P + T+ + G LG +R L A + G I Sbjct: 87 RNINKHILPKLDKVKIGDINPLLIQRLTEEWCNDLKYGG--KILGLVRNILNLAVRYGYI 144 Query: 923215 Q-------VAPHIERPAKPAPRDRYLTHAEVSRLME-AECEPHI-KLAITVLLT-TAARV 923364 P I+R K + + T ++ + +E E +I K+A+ LL T R Sbjct: 145 NNNPALPITPPKIKRKRKM--NNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRK 202 Query: 923365 GAVLELTWDRVD---------LERGQIRLRVEAEGPRKGRATVPINNXXXXXXXXXXXXX 923517 G +L LTWD ++ + R Q+ L ++ + + +++ Sbjct: 203 GELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILLELHETF 262 Query: 923518 XXDHVI--EWAGGPV--KCIRKGFLRAVSNAGLLDVTLHTLRHTAAVHMAEAGVPMDEIS 923685 ++ +GG + RK L+ + L +T+H RHT A + E+G+ + ++ Sbjct: 263 PTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLPQITIHGFRHTHASLLFESGLSLKQVQ 322 Query: 923686 QYLGHSNVQITSSVYARFS 923742 LGH ++Q T +VY + Sbjct: 323 HRLGHGDLQTTMNVYTHIT 341 >ref|NP_817718.1|gp41 Length = 400 Score = 49.3 bits (116), Expect = 5e-04 Identities = 67/245 (27%), Positives = 95/245 (38%), Gaps = 30/245 (12%) Frame = +1 Query: 923128 RKTVSVGTVWTELGHLRTCLLWAAKRG--LIQVAPHIER-PAKPAPRDRYLTHAEVSRLM 923298 RK S +V LG L + L K+G + VA ++R A P P D LT +EV L+ Sbjct: 146 RKPWSPRSVNYLLGLLVSILESEQKQGHTVRNVAALVDRIEANPTPPDP-LTESEVETLL 204 Query: 923299 EAECEPHIKLAITVLLTTAARVGAVLELTWDRVDLE------------RGQIRLRVEAEG 923442 +A + L R+ + L W VDL+ RG+ R+ + Sbjct: 205 AHIAGDRYAIAWELALA-GFRLAEISGLRWCDVDLDARTVTVQNTRLQRGKKRIEKTPKS 263 Query: 923443 PRKGRATVPINNXXXXXXXXXXXXXXXDH-------------VIEWAGGPV--KCIRKGF 923577 R R +P+ + D V+ AG P+ I + Sbjct: 264 -RASRRELPLPDDLFAAFKAARKIQAADQLRLGEAYEASGYVVVNEAGTPLTPNAIENRW 322 Query: 923578 LRAVSNAGLLDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLR 923757 R + AGL V LH RHT M GVP IS +LGH++ T Y P+ L Sbjct: 323 ARVLKAAGLRHVRLHDARHTCGTLMHLRGVPTALISAWLGHASKAFTLQTYVNPKPESLV 382 Query: 923758 KAADA 923772 AA + Sbjct: 383 IAAQS 387 >ref|NP_569753.1|putative tape-measure protein Length = 1229 Score = 48.9 bits (115), Expect = 7e-04 Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 19/197 (9%) Frame = +1 Query: 419950 TPLQLNDTVAAYARLKAFGLDPTKGAMQALVDTMAATGGGAEQLDGLVLALGQAWTKGKL 420129 T L+ A A G+ P + + L T LD + + GK Sbjct: 161 TAFGLDAAATTAASAVAAGIKPGEQLTKYLSLTADTAAIAGTSLDEMGSIFNKVQGSGKA 220 Query: 420130 QGEEALQMLERGVPVWDLLGAKMGKTAAELQEMASKGQLGRKEIELLIEAMAEKNKGASE 420309 E Q+ +RG+P++ L + + LQ+M ++G + + +IE + GA++ Sbjct: 221 MTLELRQLADRGLPIFQWLQDEFHVSGDALQDMVAQGAVDSETFRRVIE---KNIGGAAK 277 Query: 420310 GMAKTWDGILSNVLDHWGRFQRMVMA-------------SGVFDFLKGRLQEILGTLNAM 420450 GM ++ G ++N+ RF VM GVFD L ++ +G + + Sbjct: 278 GMGGSFVGSMANMKAAMSRFGAEVMGPIFKGVQPLATGLMGVFDKLTAAIKAPMGNVTTV 337 Query: 420451 AE------DGRLQLWAD 420483 E ++Q WAD Sbjct: 338 VEQWAKGMSDKMQAWAD 354 >ref|NP_899581.1|gp5 Length = 421 Score = 48.9 bits (115), Expect = 7e-04 Identities = 67/221 (30%), Positives = 91/221 (41%), Gaps = 23/221 (10%) Frame = -3 Query: 563022 YNAEQMPPYGLPGQ--ATQSGWKSHSSPGGGGWNELRFEDKAGAEEVYFQAQKDHTELIK 562849 YNAE P Y G A Q + G +E+ +D GAE ++ + E I Sbjct: 184 YNAEG-PKYDEKGTPYAAQYPYNHVRESESGHIHEI--DDTEGAERLHTYHRTGTFEEIH 240 Query: 562848 NDESRT---IGHDFAEDVGHDAVQSVAHDRRESVGNDKDTSVGRNRTVSIGVDDSESVGA 562678 D SR IG DF E V + + + +V D +N T I D + V Sbjct: 241 PDGSRVTKIIGDDF-EIVHKNQNVYIKGNLNITVVGDATFYCQQNVTQQIDGDLKQHVKG 299 Query: 562677 NR--------ALRVGADETIAVARNATETIGMNHTQTV--GIAQTV------TVGAARTD 562546 N V D T V +N T+T+ MN TQTV + QTV TVG Sbjct: 300 NVDQHVEMNVTQTVDKDVTQVVHQNVTQTVDMNVTQTVHQNVTQTVDGDVNQTVGGNVQS 359 Query: 562545 SVGGAETRSVGAVQTNTIAASRSVSVGAGQTHSVG--ADDG 562429 +V G T+++ T T+ S S SV + T S +DDG Sbjct: 360 NVTGDYTQNISGNYTITVGGSMSESVSSSYTRSAASISDDG 400 Score = 46.2 bits (108), Expect = 0.005 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 3/146 (2%) Frame = -3 Query: 562869 DHTELIKNDESRTIGHDFAEDVGHDAVQSVAHDRRESVGNDKDTSVGRNRTVSIGVDDSE 562690 D T + + ++ I D + V + Q V + ++V D V +N T ++ ++ ++ Sbjct: 276 DATFYCQQNVTQQIDGDLKQHVKGNVDQHVEMNVTQTVDKDVTQVVHQNVTQTVDMNVTQ 335 Query: 562689 SVGANRALRVGADETIAVARNATETIGMNHTQTVGIAQTVTVGAARTDSVGGAETRSVGA 562510 +V N V D V N + ++TQ + T+TVG + ++SV + TRS + Sbjct: 336 TVHQNVTQTVDGDVNQTVGGNVQSNVTGDYTQNISGNYTITVGGSMSESVSSSYTRSAAS 395 Query: 562509 VQTNTIAASRSVSVGA---GQTHSVG 562441 + + A+ +++ A G T S+G Sbjct: 396 ISDDGGGATLNLAGSAALDGTTVSLG 421 Score = 40.8 bits (94), Expect = 0.19 Identities = 31/129 (24%), Positives = 62/129 (48%) Frame = -3 Query: 562896 EEVYFQAQKDHTELIKNDESRTIGHDFAEDVGHDAVQSVAHDRRESVGNDKDTSVGRNRT 562717 + V Q D + +K + + + + + V D Q V + ++V + +V +N T Sbjct: 283 QNVTQQIDGDLKQHVKGNVDQHVEMNVTQTVDKDVTQVVHQNVTQTVDMNVTQTVHQNVT 342 Query: 562716 VSIGVDDSESVGANRALRVGADETIAVARNATETIGMNHTQTVGIAQTVTVGAARTDSVG 562537 ++ D +++VG N V D T ++ N T T+G + +++V + T + A+ +D G Sbjct: 343 QTVDGDVNQTVGGNVQSNVTGDYTQNISGNYTITVGGSMSESVSSSYTRS-AASISDDGG 401 Query: 562536 GAETRSVGA 562510 GA G+ Sbjct: 402 GATLNLAGS 410 >ref|YP_164086.1|tail length tape measure protein Length = 1099 Score = 48.9 bits (115), Expect = 7e-04 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 7/129 (5%) Frame = +1 Query: 419893 GSAEGADRALRWIEDFATRTPLQLNDTVAAYARLKAFGLD-PTKGAMQALVDTMAATGGG 420069 GSA A + L ++ + + R L+L +T AY+RL A + P G+ + A+ Sbjct: 257 GSAAKARQELEYVREISERLGLELLNTSQAYSRLVAAAKETPELGSSLRTIFEGVASATT 316 Query: 420070 A-----EQLDGLVLALGQAWTKGKLQGEEALQMLERGVP-VWDLLGAKMGKTAAELQEMA 420231 A ++ +G++LAL Q +KGK+Q +E + L + VP + L +G +L E Sbjct: 317 ALHLTRQETNGILLALEQMVSKGKVQTQELVLQLGQRVPGAFSLAAKALGTNTKQLSEWL 376 Query: 420232 SKGQLGRKE 420258 KG + E Sbjct: 377 EKGLIPAAE 385 >ref|NP_044960.1|unknown Length = 999 Score = 48.5 bits (114), Expect = 0.001 Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 13/174 (7%) Frame = +1 Query: 419848 AAEFERFRVQLTN---LEGSAEGADRALRWIEDFATRTPLQLNDTVAAYARLKAFGLDPT 420018 A + ++ + L N +G+ + D + ++ A T DT+ G D Sbjct: 180 AMDTQKAMISLQNTLKFKGNGQDFDYVSKSMQTLAKDTNANTEDTLKLSTTFIGLG-DSA 238 Query: 420019 K---GAMQALVDTMAATGGGAEQLDGLVLALGQAWTKGKLQGEEALQMLERGVPVWDLLG 420189 K G +ALV A GG EQL G+V A GQ GK+ E Q+ + + L Sbjct: 239 KTAVGKTEALVKANQAFGGTGEQLKGVVQAYGQMSASGKVSAENINQLTDNNTALGSALK 298 Query: 420190 A---KMGKTAAELQEMASKGQLGRKEIELLIEAMAEKNKGASEGMAKT----WD 420330 + +M + AS + G +E+L +AM +K GA G T WD Sbjct: 299 STVMEMNPALKQYGSFASASEKGAISVEMLDKAM-QKLGGAGGGAVTTIGDAWD 351 >ref|NP_758915.1|ORF22 Length = 627 Score = 48.1 bits (113), Expect = 0.001 Identities = 93/472 (19%), Positives = 165/472 (34%), Gaps = 31/472 (6%) Frame = -1 Query: 909350 VTVTEAAERHMRVPVQ---GNWVPFDRAVTPYTVEPADMTQSRRFKAVVFLGPSQSGKSQ 909180 +T+++ +++ +P + G W P+ + AD + V + + G ++ Sbjct: 25 LTISQWGDKNYVLPEEHGGGKW-----KTKPFQIGIADAMCDPEEERVTVMKSMRVGYTK 79 Query: 909179 MMQSVSAHAVTCAPGPVQVIHMTKTDADAWVEEKLDPTILNSPALRERLGTGRDDSTFSR 909000 ++ + + P + V+ T DA+ + ++++ P + + P L+ ++ RDD T + Sbjct: 80 IVDLAIGYYMDADPCSMLVVQPTIDDAEGFSKDEIAPMLRDVPCLQGKVQ--RDDDTLLK 137 Query: 908999 KRFKGMRLT-IGYPVPNQLSSRSQRLVMLTDYDHMPQKLGPKDSPEGSPFGMALQRIRTF 908823 K + G LT +G P + R+V+ + P G +G P R + Sbjct: 138 KVYPGGSLTLVGANSPTGFRRLTVRIVIFDEMSAYPANTGK----DGDPVRQGEGRTFSA 193 Query: 908822 MSRGCVLAETSPAFPVDP------NADW------APHAGHPHMLPPATAGLVPIYNEGTR 908679 +R + T V +D PH GH H+L + + EG Sbjct: 194 FNRKIIAGSTPTIAGVCRIEKEFIRSDQRYFHVPCPHCGHKHILQWSNFR----WPEGQP 249 Query: 908678 GRWYWECPDCGDLFEPRFDRLHYDA--------------DLDPGAAGEQAMMECPHCGTL 908541 ++ CP C E + A + +P A ++ C HCG Sbjct: 250 ELAHFVCPSCKKDIEEGSKKEMVAAGEFRSIKPFTCCGHEQEPEAWDKKGRPICKHCG-- 307 Query: 908540 IAHRHKVGLNRAALEGRGGWLHEGRHIEANGRRALVRIDDPDIRRTPIASYSLNGAAAAF 908361 + G H G HI A D P+ + + +A Y Sbjct: 308 ----------EVKISG-----HAGFHIWA------AYSDLPNAKWSKLAKY--------- 337 Query: 908360 ASWEELVQRYETERRRFEALGDDTDFARVHYTDI-GVPYRRPEAEEEGALTAAQIREHMR 908184 WEE + DD D V+ I G Y+ E E + RE Sbjct: 338 --WEE--------------VKDDPDEKVVYVNTIRGETYKETETEVDWK-PLYDRREPYG 380 Query: 908183 SQERRVAPAWTRFVTVSIDVQGNRFEVLVMAWGAQGERMPIDRFAVAQPPDH 908028 P R + ++D Q NR E+ + G E ++R PD+ Sbjct: 381 DDHDGKVPEAVRIILATVDTQDNRLEMTTIGIGEGEEVWLLNRKVFMGQPDN 432 >ref|NP_052269.1|similar to P2 tail sheath protein FI, Swiss-Prot Accession Number P22501 Length = 392 Score = 48.1 bits (113), Expect = 0.001 Identities = 23/50 (46%), Positives = 29/50 (58%) Frame = +1 Query: 418447 WIDPELNTEATMKAGKLFLDFDIEPPAPLEHLTLQAHRNGDYYEELVLSV 418596 W D E N + T+KAGKL++D+D P PLE LTL+ Y L SV Sbjct: 341 WFDEESNDKETLKAGKLYIDYDYTPVPPLESLTLRQRITDKYLVNLAESV 390 >ref|NP_958076.1|gp21 Length = 395 Score = 48.1 bits (113), Expect = 0.001 Identities = 23/50 (46%), Positives = 29/50 (58%) Frame = +1 Query: 418447 WIDPELNTEATMKAGKLFLDFDIEPPAPLEHLTLQAHRNGDYYEELVLSV 418596 W D E N + T+KAGKL++D+D P PLE LTL+ Y L SV Sbjct: 344 WFDEESNDKETLKAGKLYIDYDYTPVPPLESLTLRQRITDKYLVNLAESV 393 >ref|NP_758936.1|ORF45 Length = 68 Score = 47.8 bits (112), Expect = 0.002 Identities = 23/54 (42%), Positives = 32/54 (59%) Frame = +1 Query: 422335 YRTLAGDMLDAICKARLGSERHVPAVLAANPHLAALGSVYPAGVLITLPEVAEP 422496 YRT GD++D IC + G + V NP LA G PAG++I LPE+++P Sbjct: 3 YRTKDGDVVDDICYRQYGRSDYALQVYELNPGLAEYGPRLPAGLIIQLPEISKP 56 >ref|YP_195035.1|site-specific DNA methylase Dam Length = 295 Score = 47.8 bits (112), Expect = 0.002 Identities = 57/266 (21%), Positives = 109/266 (40%), Gaps = 34/266 (12%) Frame = +1 Query: 744421 WLGGKKRLHPLILERIEAIPHRAYVEPFVGMGGIFLRRRFRPRLEVMN-DRNGEIINLFR 744597 + GGK + + +I + + V PF+G G + R +EV+ D ++N + Sbjct: 7 YAGGKSKAYKIITSHLPSTER--IVSPFIGGGSLESRWSSELGIEVLGFDIFCALVNFWD 64 Query: 744598 ILQRHYPQLLEIMRFQICSRREFDRLR---------------------LTDPATLTDLER 744714 +L + +L + ++ ++E+ R++ +P L+ +E Sbjct: 65 VLLKTPDELADKLQTLTPDKQEYARVKEILLCWRYTQDMLKDWHTDYYKRNPIDLSKIEA 124 Query: 744715 AARFLYLQRLSFGGKLDGVFGVSAGHGPRFSLARLEPVLDAAHERLDGVVFESLDWADLI 744894 AA + Y LS+G G + ++ ++ + D + L V ++ D ++I Sbjct: 125 AAYYYYNHNLSYGPMYMGWMSKIYENQKKWD-KMVKNIRDYKNPNLH-VAEQTFD--NVI 180 Query: 744895 PRYDTTETLFYLDPPYF---GGENDYGKGLFDRAQF---------ARIAEILGGLKGAFL 745038 P Y + YLDPPY+ +N KG++ ++ ++L KG F+ Sbjct: 181 PEY--SNDFLYLDPPYYLKKDSDNKMLKGMYPNCNIDVHHTGFDHEKLRDLLHNHKGKFI 238 Query: 745039 LSINDTPEIRALFGRFHLEPVRLSYS 745116 LS N+ IR + F L YS Sbjct: 239 LSYNNCETIREYYKDFDLYYPEWHYS 264 >ref|NP_542326.1|unknown Length = 295 Score = 47.4 bits (111), Expect = 0.002 Identities = 65/239 (27%), Positives = 98/239 (41%), Gaps = 24/239 (10%) Frame = -1 Query: 930545 ISIGTGAVTGVYYPTGGAICRMMSRNRAEHGIRCAVESTGGS---VYNVNAVRSGELDFG 930375 I + TGA +GVY+ G AI +M R+ I A E T S + ++ A D Sbjct: 26 IRLCTGAESGVYFAAGDAIAKM--AGRSIEVINVATEGTIDSLDRLLDLPADDPNACDAM 83 Query: 930374 VAQSDVQYKAYEGEGTFADQGAYPELRSVFSLHPEPFTVVARADAGIANFEDLK---GK- 930207 + Q D + + +LR V SLH E V+ A++G+ + DL+ GK Sbjct: 84 IGQPDGPVFV-----SRSSPAKVKKLRQVASLHREYLHVLCGANSGVDDLGDLESDPGKY 138 Query: 930206 RVNVGNPGSG-----------QRDTMEVLMKELGWTMGDFTLTSELQAGEQSQALCDNNI 930060 + +G PGSG D +V ++ G + L A +A C Sbjct: 139 SIAIGEPGSGAWLIWQNITSADEDYAKVPVRNEGGILA-------LSAVSSGEATC---- 187 Query: 930059 DAMVYTVGHPSGSIQEA-TTACDAVLVNVAG-----EAVDKLVEANPYYRKATIPGGMY 929901 MV G +G++ EA T D V++ A +A D ++ P Y IP G Y Sbjct: 188 --MVVPAGLKNGTVVEADQTYGDTVILAGANDRNFDDAAD--IKGEPLYENREIPDGTY 242 >ref|NP_817352.1|gp14 Length = 1188 Score = 47.4 bits (111), Expect = 0.002 Identities = 81/337 (24%), Positives = 130/337 (38%), Gaps = 23/337 (6%) Frame = +1 Query: 419689 GEGMMRQAATVGR-GAALMG-EGLGSVTXXXXXXXXXXXXXXXTVSLIAGAFLRPAAEFE 419862 G ++ GR +AL G EG S +I A + FE Sbjct: 103 GSSLVSSLPVAGRFSSALSGYEGAASKAGAVAGRALGTAFTAAATGIIGVAAVSLFKGFE 162 Query: 419863 RF------RVQLTNLEGSAEGADRA-------LRWIEDFATRTPLQLNDTVAAYARLKAF 420003 R+ RV+L NL + EG RA ++ + D +T L+ + Sbjct: 163 RYKSLDASRVRLENLNRTLEGTGRAGIDVAAVMKTVNDVVDQTAFGLDQAF----NVATV 218 Query: 420004 GLDPTKGAMQALVDTMAATGGGAEQLDGLVLALGQAWTKGKLQGEEALQMLE---RGVPV 420174 L G ++ M A A L+ + ++G A+ + G+ ++ L RG+P+ Sbjct: 219 ALSSNTGDLKRF---MTAVADAAGYLNTDLQSVGDAFLQIAATGKVSMDQLSNQLRGIPL 275 Query: 420175 WDLLGAKMGKTAAELQEMASKGQLGRKEIELLIEAMAEKNKGASEGMAKTWDGILSNV-- 420348 L ++ T AEL M KG++G +E LI A+ + G ++ T +G ++N+ Sbjct: 276 -SWLAKELNVTGAELSAMMQKGEVG---LETLIRAVEKNAAGFAKASGDTLEGAINNMNF 331 Query: 420349 -LDHWG-RFQRMVMASGVFDFLKGRLQEILGTLNAMAEDGRLQLWADEVARVILRTLEAM 420522 L G F V D L++ + L A D + W I EA Sbjct: 332 ALSRIGANFLGAVFGKPTED--ANELKDAVSQLTARLND--VNAWIVAHGDGI---KEAF 384 Query: 420523 WAFAGQAVAAWNLLVPVVAQAADL-LGGWDRLAWFAA 420630 A A WN + +V +DL +G D + FAA Sbjct: 385 RDAAETAQDLWNAISKIVGVLSDLGIGVGDVVGAFAA 421 >ref|NP_848237.1|adenine methylase Length = 192 Score = 47.4 bits (111), Expect = 0.002 Identities = 28/74 (37%), Positives = 37/74 (50%) Frame = +2 Query: 377198 GGFDVILADPPWRFASNSEAKPGRNAIRHYRCMKVGEIEALPVKAIAAPDALCLMWVTVP 377377 G + +I ADPPW + + A R A Y M V +I LPV ++A D L MW Sbjct: 3 GKYTLIYADPPWTYRDKA-ADGERGAGFKYPVMNVLDICRLPVWDLSADDCLLAMWWVPT 61 Query: 377378 FAERAFRVLRAWGF 377419 A +V+ AWGF Sbjct: 62 QPVEALKVVEAWGF 75 >ref|NP_438114.1|integrase-like protein Length = 365 Score = 46.6 bits (109), Expect = 0.003 Identities = 25/71 (35%), Positives = 35/71 (49%) Frame = +1 Query: 923563 IRKGFLRAVSNAGLLDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFS 923742 +RK R + GL +T H RHT A + EAG+P + LGH+ + IT +Y S Sbjct: 289 VRKRLDRFILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLS 348 Query: 923743 PQHLRKAADAL 923775 + AD L Sbjct: 349 KKSKDNVADKL 359 >ref|NP_795541.1|putative integrase Length = 384 Score = 46.6 bits (109), Expect = 0.003 Identities = 25/71 (35%), Positives = 35/71 (49%) Frame = +1 Query: 923563 IRKGFLRAVSNAGLLDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFS 923742 +RK R + GL +T H RHT A + EAG+P + LGH+ + IT +Y S Sbjct: 308 VRKRLDRFILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLS 367 Query: 923743 PQHLRKAADAL 923775 + AD L Sbjct: 368 KKSKDNVADKL 378 >ref|YP_195180.1|virion structural protein Length = 316 Score = 46.6 bits (109), Expect = 0.003 Identities = 63/247 (25%), Positives = 87/247 (35%), Gaps = 12/247 (4%) Frame = -2 Query: 628492 TVSDGQGGTQ------TAPLDITFTGANDVPVVSAQTGTAVEASGLNNNVAGSAATGSLL 628331 T +D G T+ A D A+ V+A +A+ S N + G +L Sbjct: 83 TYTDASGNTRHKAQHLVAFKDAPANTADADDSVAADVASAISISAQPANQSTFTPAGGIL 142 Query: 628330 TGPNAATDIDGDEISVVGVRTGGQSETGTEGVWTDGTITLQGTYGTLTLNEDGSWSYAAD 628151 T D G + V R G G TD GT T T+ DG+ + D Sbjct: 143 T-----IDTIG---AAVATRPAGTYTIGASDYTTDAA----GTGATFTITVDGTGAATID 190 Query: 628150 DDNPTVDGLTGPTDTLEETFTY------TVTDANGATASQELTVTISGRNDALNVSSSIG 627989 + G ++ETFT TD G +LT DA V+++ Sbjct: 191 SIDAAGSGFV-----VDETFTILGSVFDNGTDPAGTDGVDDLTF------DAATVAAAAA 239 Query: 627988 TDISTGEDADTQIDLTGLVFEDPDLGSEIYEFAVDAGQGTLWTEGVDGLTVTGNGTGQLV 627809 T T D GS +Y++ V A GT WT V+G + L Sbjct: 240 TFTITAS---------------ADAGSVVYQWQVQAATGTRWT------NVSGANSASLA 278 Query: 627808 LTGSATA 627788 LTG TA Sbjct: 279 LTGLTTA 285 Score = 41.2 bits (95), Expect = 0.15 Identities = 64/273 (23%), Positives = 100/273 (36%), Gaps = 8/273 (2%) Frame = -3 Query: 562983 QATQSGWKSHSSPGGGGWNELRFEDKAGAEEVYFQAQKDHTELIKNDESRTIGHDFAEDV 562804 +AT S + G W + D +G + + H K+ + T Sbjct: 62 EATLSENRERGLTAPGWWEYFTYTDASGNT----RHKAQHLVAFKDAPANTA-------- 109 Query: 562803 GHDAVQSVAHDRRESVGNDKDTSVGRNRTVSIGVDDSESVGANRALRVGADETIAVARNA 562624 DA SVA D ++ + T + G+ +++GA A R TI + Sbjct: 110 --DADDSVAADVASAISISAQPANQSTFTPAGGILTIDTIGAAVATRPAGTYTIGASDYT 167 Query: 562623 TETIGMNHTQTVGIAQTVTVGAARTDSVGGAETRSVGAVQTNTIAASRSV-SVGAGQTHS 562447 T+ G T T+ + T GAA DS+ A + G V T SV G + Sbjct: 168 TDAAGTGATFTITVDGT---GAATIDSIDAAGS---GFVVDETFTILGSVFDNGTDPAGT 221 Query: 562446 VGAD----DGWTVGGSQ---TVSVGADQSVTVGAKQTVSTGSDQVTTVGGSRATQVAKDD 562288 G D D TV + T++ AD V Q + + T V G+ + +A Sbjct: 222 DGVDDLTFDAATVAAAAATFTITASADAGSVVYQWQVQAATGTRWTNVSGANSASLALTG 281 Query: 562287 LQKADGAMGIGVGKSYTLDVKDEITLKCGSAEI 562189 L AD GK Y + ++T G+ E+ Sbjct: 282 LTTAD------TGKKYRV----KLTSSAGAEEV 304 >ref|NP_859328.1|hypothetical protein Length = 444 Score = 46.2 bits (108), Expect = 0.005 Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 4/122 (3%) Frame = +1 Query: 923074 LRPDQITPEACRSYTKARRKTVSVGTVWTELGHLRTCLLWAAKRGLIQVAPHIE----RP 923241 +R D +T E T RK +V TV + +AA+ G ++ P R Sbjct: 143 IRKDLLTGEKGSRKTSTSRKGRTVPTVNYYMTTTAGMFSFAAENGYLEKNPFNSITPLRK 202 Query: 923242 AKPAPRDRYLTHAEVSRLMEAECEPHIKLAITVLLTTAARVGAVLELTWDRVDLERGQIR 923421 +KP P LT E SRL++A K TV + T R G + L W+ +DL+ G I Sbjct: 203 SKPVPDP--LTRDEFSRLIDACHHQQTKNLWTVAVFTGMRHGEIAALAWEDIDLKAGTIT 260 Query: 923422 LR 923427 +R Sbjct: 261 VR 262 >ref|NP_612960.1|hypothetical protein Length = 444 Score = 46.2 bits (108), Expect = 0.005 Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 4/122 (3%) Frame = +1 Query: 923074 LRPDQITPEACRSYTKARRKTVSVGTVWTELGHLRTCLLWAAKRGLIQVAPHIE----RP 923241 +R D +T E T RK +V TV + +AA+ G ++ P R Sbjct: 143 IRKDLLTGEKGSRKTSTSRKGRTVPTVNYYMTTTAGMFSFAAENGYLEKNPFNSITPLRK 202 Query: 923242 AKPAPRDRYLTHAEVSRLMEAECEPHIKLAITVLLTTAARVGAVLELTWDRVDLERGQIR 923421 +KP P LT E SRL++A K TV + T R G + L W+ +DL+ G I Sbjct: 203 SKPVPDP--LTRDEFSRLIDACHHQQTKNLWTVAVFTGMRHGEIAALAWEDIDLKAGTIT 260 Query: 923422 LR 923427 +R Sbjct: 261 VR 262 >ref|NP_859162.1|hypothetical protein Length = 444 Score = 46.2 bits (108), Expect = 0.005 Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 4/122 (3%) Frame = +1 Query: 923074 LRPDQITPEACRSYTKARRKTVSVGTVWTELGHLRTCLLWAAKRGLIQVAPHIE----RP 923241 +R D +T E T RK +V TV + +AA+ G ++ P R Sbjct: 143 IRKDLLTGEKGSRKTSTSRKGRTVPTVNYYMTTTAGMFSFAAENGYLEKNPFNSITPLRK 202 Query: 923242 AKPAPRDRYLTHAEVSRLMEAECEPHIKLAITVLLTTAARVGAVLELTWDRVDLERGQIR 923421 +KP P LT E SRL++A K TV + T R G + L W+ +DL+ G I Sbjct: 203 SKPVPDP--LTRDEFSRLIDACHHQQTKNLWTVAVFTGMRHGEIAALAWEDIDLKAGTIT 260 Query: 923422 LR 923427 +R Sbjct: 261 VR 262 >ref|NP_817477.1|gp27 Length = 946 Score = 46.2 bits (108), Expect = 0.005 Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 8/176 (4%) Frame = +1 Query: 303778 PGTAYSYCNCNFRIVSEILESETGRALRDLYAERIFGPAGMRTAELTSDTRHPADEVVGY 303957 PGT + Y N N+ ++S IL++ G+ +R + + I P G+ + PA VG+ Sbjct: 225 PGTEFEYVNGNWFLISLILKAVRGKHIRQILYDDIINPLGLTETSWPATAAMPAPYAVGH 284 Query: 303958 EGSDAVGFFPADNGIFWIGDAG-ISASLQDMLAYESWI----DATRNDENSIYRRISVPP 304122 +G +G + W AG I ++L D+ W DAT R S+ Sbjct: 285 DG--LLGGITTETHPTWPHCAGSIVSTLTDL---HKWCGHMRDATLLTPEMEQLRDSMFC 339 Query: 304123 AYVCGT---PASYGFGLSHETVAGVKVTGHGGALRGFRAQRFHAADERLSVVVIFN 304281 G+ P YG+GL+ K GH G+ G+ + + +V N Sbjct: 340 PIPSGSPFAPPEYGYGLAWYDYGDWK--GHAGSWVGYECSPMYHKESGTIIVCYEN 393 >ref|NP_839940.1|putative lysin Length = 305 Score = 46.2 bits (108), Expect = 0.005 Identities = 44/170 (25%), Positives = 66/170 (38%), Gaps = 1/170 (0%) Frame = +1 Query: 660517 VHGIDVSRFQGPIDWPTAASAGVSFAFIKATEGGDRVDAAFHENWXXXXXXXXXXXXYHF 660696 ++GID+S +Q ++ A F FIKATEG ++ + E YHF Sbjct: 1 MNGIDISSYQAELN---AGIVPSDFVFIKATEGTKYINPTWREQAGQVTQANKLLGFYHF 57 Query: 660697 FYFCRPAAEQADWFIRTVPKSPRALPPVLDMEWNPFSPTCTFRPEPAVVRAEALTFLRQV 660876 P AE AD+FI V VLD E + A A FL +V Sbjct: 58 ASTGNPIAE-ADFFISVVKDYIGKAVLVLDFEAGAIN---------AWGNVGARQFLNRV 107 Query: 660877 GAHYGRRPIIYTTIDFFERNEMWRLTGYD-FWLRSVAAHPHERYAGHPWT 661023 G P+IY + + + ++ + W+ A+ Y PW+ Sbjct: 108 KEKTGINPMIYMSAEVTRQFNWSTISNSNALWVAQYASTSPTGYQSEPWS 157 >ref|NP_050500.1|integrase Length = 444 Score = 46.2 bits (108), Expect = 0.005 Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 4/122 (3%) Frame = +1 Query: 923074 LRPDQITPEACRSYTKARRKTVSVGTVWTELGHLRTCLLWAAKRGLIQVAPHIE----RP 923241 +R D +T E T RK +V TV + +AA+ G ++ P R Sbjct: 143 IRKDLLTGEKGSRKTSTSRKGRTVPTVNYYMTTTAGMFSFAAENGYLEKNPFNSITPLRK 202 Query: 923242 AKPAPRDRYLTHAEVSRLMEAECEPHIKLAITVLLTTAARVGAVLELTWDRVDLERGQIR 923421 +KP P LT E SRL++A K TV + T R G + L W+ +DL+ G I Sbjct: 203 SKPVPDP--LTRDEFSRLIDACHHQQTKNLWTVAVFTGMRHGEIAALAWEDIDLKAGTIT 260 Query: 923422 LR 923427 +R Sbjct: 261 VR 262 >ref|NP_536371.1|putative tail length tape measure protein Length = 1354 Score = 46.2 bits (108), Expect = 0.005 Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 7/211 (3%) Frame = +1 Query: 419944 TRTPL----QLNDTVAAYARLKAFGLDPTKGAMQALVDTMAATGGGAEQLDGLVLALGQA 420111 TR PL +L +A A + + + +A +G A+ ++ LGQA Sbjct: 123 TRQPLDATAELYQRIANNASHLGLSIKQVGPLVTTISKAVALSGVSADTARMGLVQLGQA 182 Query: 420112 WTKGKLQGEEALQMLERGVPVWDLLGAKMGKTAAELQEMASKGQLGRKEIELLIEAMAEK 420291 + G+L+G++ +LE V D + MGK++A+L+ MA +G+L + L+EA+ Sbjct: 183 FAAGQLRGQDLNSVLEELPGVADAIARGMGKSSAQLKSMAEEGKL---TVGNLVEALTR- 238 Query: 420292 NKGASEGMAKTWDGILSNVLDHWGRFQ-RMVMASGVFDFLKGRLQEILGTLNAMAE--DG 420462 A+ G ++ + + V R Q +V G D G + + +AE DG Sbjct: 239 ---AAGGTDTLFEKMQTTVGQTMTRLQTEIVKYIGESDQATGASARLAQGITYVAEHLDG 295 Query: 420463 RLQLWADEVARVILRTLEAMWAFAGQAVAAW 420555 ++L A I A QA AW Sbjct: 296 IVKLGVSLAAGRIAVYFGQSAVAATQAATAW 326 >ref|NP_049461.1|integrase Length = 444 Score = 46.2 bits (108), Expect = 0.005 Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 4/122 (3%) Frame = +1 Query: 923074 LRPDQITPEACRSYTKARRKTVSVGTVWTELGHLRTCLLWAAKRGLIQVAPHIE----RP 923241 +R D +T E T RK +V TV + +AA+ G ++ P R Sbjct: 143 IRKDLLTGEKGSRKTSTSRKGRTVPTVNYYMTTTAGMFSFAAENGYLEKNPFNSITPLRK 202 Query: 923242 AKPAPRDRYLTHAEVSRLMEAECEPHIKLAITVLLTTAARVGAVLELTWDRVDLERGQIR 923421 +KP P LT E SRL++A K TV + T R G + L W+ +DL+ G I Sbjct: 203 SKPVPDP--LTRDEFSRLIDACHHQQTKNLWTVAVFTGMRHGEIAALAWEDIDLKAGTIT 260 Query: 923422 LR 923427 +R Sbjct: 261 VR 262 >ref|NP_536807.1|integrase Length = 337 Score = 45.8 bits (107), Expect = 0.006 Identities = 59/216 (27%), Positives = 86/216 (39%), Gaps = 4/216 (1%) Frame = +1 Query: 923128 RKTVSVGTVWTELGHLRTCLLWAAKRGLIQVAPHIERPAKPAPRDRYLTHAEVSRLMEAE 923307 R+ + V+ EL LR W A+ L V ER + A +L ++ RL+ AE Sbjct: 134 REHAYLRAVFNELKSLRK---WTAENPLDGVRLFKERETELA----FLYERDIYRLL-AE 185 Query: 923308 CE----PHIKLAITVLLTTAARVGAVLELTWDRVDLERGQIRLRVEAEGPRKGRATVPIN 923475 C+ P + L + + L T AR LT +V ++ +K R TVPI+ Sbjct: 186 CDNSRNPDLGLIVRICLATGARWSEAETLTQSQVM----PYKITFVNTKSKKNR-TVPIS 240 Query: 923476 NXXXXXXXXXXXXXXXDHVIEWAGGPVKCIRKGFLRAVSNAGLLDVTLHTLRHTAAVHMA 923655 D + LRA +T H LRHT A H Sbjct: 241 KELFDMLPKKRGRLFND--------AYESFENAVLRAEIELPKGQLT-HVLRHTFASHFM 291 Query: 923656 EAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKA 923763 G + + + LGHS +++T YA F+P HL A Sbjct: 292 MNGGNILVLKEILGHSTIEMTMR-YAHFAPSHLESA 326 >ref|NP_945044.1|gp14 Length = 1354 Score = 45.8 bits (107), Expect = 0.006 Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 7/211 (3%) Frame = +1 Query: 419944 TRTPL----QLNDTVAAYARLKAFGLDPTKGAMQALVDTMAATGGGAEQLDGLVLALGQA 420111 TR PL +L +A A + + + +A +G A+ ++ LGQA Sbjct: 123 TRQPLDATAELYQRIANNASHLGLSIKQVGPLVTTISKAVALSGVSADTARMGLVQLGQA 182 Query: 420112 WTKGKLQGEEALQMLERGVPVWDLLGAKMGKTAAELQEMASKGQLGRKEIELLIEAMAEK 420291 + G+L+G++ +LE V D + MGK++A+L+ MA +G+L + L+EA+ Sbjct: 183 FAAGQLRGQDLNSVLEELPGVADAIARGMGKSSAQLKSMAEEGKL---TVGNLVEALTR- 238 Query: 420292 NKGASEGMAKTWDGILSNVLDHWGRFQ-RMVMASGVFDFLKGRLQEILGTLNAMAE--DG 420462 A+ G ++ + + + R Q +V G D G + + +AE DG Sbjct: 239 ---AAGGTDTLFEKMQTTIGQTMTRLQTEIVKYIGESDQATGASARLAQGITYVAEHLDG 295 Query: 420463 RLQLWADEVARVILRTLEAMWAFAGQAVAAW 420555 ++L A I A QA AW Sbjct: 296 IVKLGVSLAAGRIAVYFGQSAVAATQAATAW 326 >ref|NP_624303.1|integrase fragment Length = 112 Score = 45.4 bits (106), Expect = 0.008 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Frame = +1 Query: 923608 DVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYAR----FSPQHLRKAADAL 923775 +VT H LRH+ A ++ GV + +S+ LGHSNV IT +VY+ +K D + Sbjct: 50 NVTFHALRHSHASYLLSKGVSIQYVSERLGHSNVGITENVYSHLLKTLRENEEKKITDLM 109 Query: 923776 EF 923781 +F Sbjct: 110 DF 111 >ref|NP_795464.1|hypothetical protein Length = 406 Score = 45.1 bits (105), Expect = 0.010 Identities = 53/236 (22%), Positives = 90/236 (38%), Gaps = 4/236 (1%) Frame = +3 Query: 759264 MIHLRYMAEDGWTGRSPLEVAAESVGLALAGQEXXXXXXXXXXXXXXIRLRDDYEDDEXX 759443 +IH ++ + D GRSPL + + L G + ++ + Sbjct: 157 VIHWKFFSHDTILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTMKGAQLSGDAR 216 Query: 759444 XXXXXXXXXXXXXPEVEGFPILGEGE-DVKTLDMKAADQELLGSRKFDREQIAAIYRVPP 759620 V G P++ + + L++ +L+ S F QIA RVP Sbjct: 217 QRARQEFEKMREG-SVGGSPLVFDSTMEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPS 275 Query: 759621 AKLQMMEYGVKANGE---QQAIDYLTDCLLHWAKQVEDQLALGVLTEAERRAGLFFRHDF 759791 KL GV + + Q DY+T+ L + + +L L L + +RR + +F Sbjct: 276 YKL-----GVNSPNQSVAQLMEDYVTNDLPFYFDAITSELGLKTLNDKDRR---LYHIEF 327 Query: 759792 GALLRPTTRERYEALAKAVGGPILTPNEARRIDGYDPIEGGDRLNPAPNMTRSEET 759959 R T + + K V ILTPN+ +E G + + PNM R + + Sbjct: 328 DT--RSVTGRNVDEIVKLVNNQILTPNQGL-------VELGKQKSTDPNMDRYQSS 374 >ref|NP_943810.1|gp32 Length = 448 Score = 45.1 bits (105), Expect = 0.010 Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 13/146 (8%) Frame = -2 Query: 628690 GGAPGEGGTLSYGVQGGVSANGFSVL-----TLPYGTLSVNQSTGAYSFLPNPTALNS-- 628532 GG G+G + S GG +G++ + + V + GA+++ P P A+ Sbjct: 238 GGGGGKGRSSSSRGVGGRGGDGYARIYFINTSYKRDITRVYTTAGAWTWTPPPWAVAGTK 297 Query: 628531 ----LAEGAEANFSFTLTVSDGQGGTQTAPLDITFTGANDVPVVSAQTGTAVEASGLNNN 628364 + G A + G+GG P+ T T D+PV A TG V A G +N Sbjct: 298 IDIVMFPGGRAGKNGATFGGAGRGGLAGTPVTATLTVGTDIPVSGALTG-VVGAGGASNG 356 Query: 628363 VAGSAATGSL--LTGPNAATDIDGDE 628292 AG +T + LT P D G + Sbjct: 357 AAGGVSTCTTVGLTAPVNNADASGQD 382 >ref|NP_043466.1|integrase Length = 337 Score = 44.7 bits (104), Expect = 0.013 Identities = 58/216 (26%), Positives = 85/216 (39%), Gaps = 4/216 (1%) Frame = +1 Query: 923128 RKTVSVGTVWTELGHLRTCLLWAAKRGLIQVAPHIERPAKPAPRDRYLTHAEVSRLMEAE 923307 R+ + V+ EL LR W + L V ER + A +L ++ RL+ AE Sbjct: 134 REHAYLRAVFNELKSLRK---WTTENPLDGVRLFKERETELA----FLYERDIYRLL-AE 185 Query: 923308 CE----PHIKLAITVLLTTAARVGAVLELTWDRVDLERGQIRLRVEAEGPRKGRATVPIN 923475 C+ P + L + + L T AR LT +V ++ +K R TVPI+ Sbjct: 186 CDNSRNPDLGLIVRICLATGARWSEAETLTQSQVM----PYKITFTNTKSKKNR-TVPIS 240 Query: 923476 NXXXXXXXXXXXXXXXDHVIEWAGGPVKCIRKGFLRAVSNAGLLDVTLHTLRHTAAVHMA 923655 D + LRA +T H LRHT A H Sbjct: 241 KELFDMLPKKRGRLFND--------AYESFENAVLRAEIELPKGQLT-HVLRHTFASHFM 291 Query: 923656 EAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKA 923763 G + + + LGHS +++T YA F+P HL A Sbjct: 292 MNGGNILVLKEILGHSTIEMTMR-YAHFAPSHLESA 326 >ref|NP_203478.1|hypothetical protein Length = 357 Score = 44.7 bits (104), Expect = 0.013 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 2/104 (1%) Frame = -1 Query: 893099 GRAASLVPFSVPDGTPTFPGLTFNGEVGSNTGFFLAAENELGVSCQGTERARFTPSGMQL 892920 GR A L P + GT P LTF+G+ +TG + A +++ + G + +FT +G Sbjct: 74 GRGAMLAPLRLQQGTAGAPALTFSGD--PDTGLYRAGADDVRMQVDGAQSLQFTSAGTVT 131 Query: 892919 QGLMT-GT-AVTQSDLDTTPGRLLKVGDYGLGGTARPIPGNDAD 892794 G T GT AVT + T + GG A + AD Sbjct: 132 PGTATAGTLAVTGTSSFTGTASFTAPAAFNSGGPAAALKAGVAD 175 >ref|NP_858965.1|tail lenght tape measure protein Length = 998 Score = 44.3 bits (103), Expect = 0.017 Identities = 40/112 (35%), Positives = 53/112 (47%), Gaps = 7/112 (6%) Frame = -2 Query: 899368 SLRAQVDPLY-AASKRYEQALETLNAAQAAGV-IGDQ-----ERARTLKLLDAQMISADR 899210 +L AQV L AAS A E NAA + I D+ AR K+L+A+ + Sbjct: 89 ALDAQVKKLREAASVNVAAATEQENAALQKQIDIRDRLSKLLSTARGQKILEAEAARSIA 148 Query: 899209 ATTAATLGIGRFTPAITNASFQVQDFAVQVASGQSAMIAFTQQAPQLLGAFG 899054 A L G+ A + Q+QDF VQV GQ+ + A QQ QL G +G Sbjct: 149 APGKPQLSEGQLRFARQSTPAQIQDFLVQVQGGQNPLTALFQQGSQLQGLYG 200 >ref|NP_056689.1|putative minor tail protein Length = 1510 Score = 44.3 bits (103), Expect = 0.017 Identities = 49/244 (20%), Positives = 102/244 (41%), Gaps = 21/244 (8%) Frame = +1 Query: 419857 FERFRVQLTNLEGSAEGADRALRWIEDFATRTPLQLNDTVAAYARLKAFGLDPTKGAMQA 420036 ++ F L+ L + A + ++D+AT+T +D +A++ A G ++A Sbjct: 82 WKTFDGNLSQLGWGKKEIASAKKAMQDYATQTIYSASDMGTTFAQMAAIGRSDAGDLVKA 141 Query: 420037 LVDTMAATGGGAEQLDGLVLALGQAWTKGKLQGEEALQMLERGVPVWDLLGAKMGKTAAE 420216 + A+ + + L + QA TK K+Q + M+E+ + +MG T Sbjct: 142 MGGLAASAENPKQAMKTLSQQMVQAMTKPKIQWADFKLMMEQSPAGMSAVAREMGMT--- 198 Query: 420217 LQEMASKGQLGRKEIELLIEAMAEKNKGASEGMAKTWDGILSNVLDHWGRFQRMVMASGV 420396 L E+ +K Q G + E EA ++ + + +A + + V G+ Sbjct: 199 LDELVTKIQNGEIKTEDFTEAF-KRAGNSMQDLATRYKSVDEAV-------------GGL 244 Query: 420397 FDFLKGRLQEILGTLNAMA--------------EDGRLQLWA-------DEVARVILRTL 420513 ++ + +LQ + L+A A +D ++Q +A D+ + I +T+ Sbjct: 245 YETVSNKLQPVFEKLSAKAIKGIEGIIDAFSKIDDSKIQSFANNLSKGIDKAVKNISQTV 304 Query: 420514 EAMW 420525 ++ W Sbjct: 305 QSFW 308 >ref|YP_024782.1|p54 Length = 683 Score = 43.9 bits (102), Expect = 0.023 Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Frame = -1 Query: 676382 RALGYARAGVCVHLAGPAGLGKTTLALRIAQALGRPVAFMTGN-EWLGSRDFI 676227 +A+ YAR G C L G AG GKTT + QAL AF T N +++G +D I Sbjct: 140 KAVTYAREGQCFALTGAAGTGKTTAQAAVVQALEEQGAFSTHNFKYIGEKDSI 192 >ref|NP_612994.1|hypothetical protein Length = 348 Score = 43.1 bits (100), Expect = 0.038 Identities = 28/92 (30%), Positives = 50/92 (54%) Frame = +3 Query: 173913 LVRVRGAFEKFGTAYCAMDFIEGEPLSRLAQATLQRTGFIAEDLLRSFLAPICLALETVH 174092 +V+V+ A + Y AM F L++L +++ + +++R + L +H Sbjct: 70 IVQVQYAAQCESNIYIAMPFYHNGSLNQL----MKKNNLTSREIIR-YSIQFLSGLYHIH 124 Query: 174093 STNLVHRDVKPANIMISRRDQQPILIDFGAAR 174188 S L+H D+KP NIMIS R+ + +L DFG ++ Sbjct: 125 SKGLMHFDIKPNNIMISNRN-EAMLSDFGLSQ 155 >ref|NP_695118.1|putative tail protein Length = 1517 Score = 43.1 bits (100), Expect = 0.038 Identities = 46/234 (19%), Positives = 101/234 (43%), Gaps = 14/234 (5%) Frame = +1 Query: 419857 FERFRVQLTNLEGSAEGADRALRWIEDFATRTPLQLNDTVAAYARLKAFGLDPTKGAMQA 420036 ++ F L+ L + A + ++D+AT+T +D ++++ A G ++A Sbjct: 82 WKTFDGNLSQLGWGKKEIASAKKAMQDYATQTIYSASDMGTTFSQMAAIGRSDAGDLVKA 141 Query: 420037 LVDTMAATGGGAEQLDGLVLALGQAWTKGKLQGEEALQMLERGVPVWDLLGAKMGKTAAE 420216 + A+ + + L + QA TK K+Q + M+E+ + +MG T Sbjct: 142 MGGLAASAENPKQAMKTLSQQMVQAMTKPKIQWADFKLMMEQSPAGMSAVAREMGMT--- 198 Query: 420217 LQEMASKGQLGRKEIELLIEAMAEKNKGASEGMAKTWDGILSNVLDHWGRFQRMVMASGV 420396 L E+ +K Q G + E EA ++ + + +A + + V G+ Sbjct: 199 LDELVTKIQNGEIKTEDFTEAF-KRAGNSMQDLATRYKSVDEAV-------------GGL 244 Query: 420397 FDFLKGRLQEILGTLNAMA--------------EDGRLQLWADEVARVILRTLE 420516 ++ + +LQ + L+A A +D ++Q +A+ +++ I +T++ Sbjct: 245 YETVSNKLQPVFEKLSAKAIKGIEGIIDAFSKIDDSKIQSFANNLSKGIDKTVK 298 >ref|NP_795660.1|putative integrase Length = 362 Score = 43.1 bits (100), Expect = 0.038 Identities = 23/71 (32%), Positives = 32/71 (45%) Frame = +1 Query: 923563 IRKGFLRAVSNAGLLDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFS 923742 +R+ R V L + H RHT A + EAGVP + LGH+ + IT +Y S Sbjct: 286 VRRRLKRTVERHHLKKINPHGFRHTHASLLFEAGVPAKLAQERLGHAKISITMDLYTHLS 345 Query: 923743 PQHLRKAADAL 923775 A+ L Sbjct: 346 KNQTDNVAEKL 356 >ref|NP_958590.1|putative major tail protein Length = 159 Score = 43.1 bits (100), Expect = 0.038 Identities = 25/122 (20%), Positives = 55/122 (45%) Frame = -1 Query: 901700 ETAYGGLTWTAVGEVTEVPEYGGSAEVVNHTPLATGITQKYHGAVNYGSMQIPLAFNSTD 901521 E + G +W + ++ +PE GG E ++ T LA ++ G N ++Q + Sbjct: 34 ERSVDGSSWDEIADIKTIPELGGDTEKIDVTTLADDRRKQIEGIQNASNVQFQAVYKGAS 93 Query: 901520 AGQAILEAARKNRNRIAFKIAFPKIDPLSTEGAADYFQGKVFGFTKSAPANGVVSGSVTV 901341 +A+ +A +R + +K+ +P + +G+ + G V NG + ++T+ Sbjct: 94 FAKALAQAG--DRKQYQWKVTYPDGMTATMKGSYNIKFGAV-------SVNGALGYTITI 144 Query: 901340 EI 901335 + Sbjct: 145 TV 146 >ref|NP_680485.1|putative portal protein Length = 417 Score = 43.1 bits (100), Expect = 0.038 Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 1/233 (0%) Frame = +3 Query: 759264 MIHLRYMAEDGWTGRSPLEVAAESVGLALAGQEXXXXXXXXXXXXXXIRLRDDYEDDEXX 759443 +IH ++ + D GRSPL + +GL +G I+ ++ E Sbjct: 160 VIHWKFFSYDTIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIKAKESRLSAEAR 219 Query: 759444 XXXXXXXXXXXXXPEVEGFPILGEGE-DVKTLDMKAADQELLGSRKFDREQIAAIYRVPP 759620 + G PI+ + D + L++ L+ S + QIA RVP Sbjct: 220 QKIREDFERAQAGADA-GSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPA 278 Query: 759621 AKLQMMEYGVKANGEQQAIDYLTDCLLHWAKQVEDQLALGVLTEAERRAGLFFRHDFGAL 759800 +L + + +Q A DY+ + L + + + + L +L +A+R ++ G Sbjct: 279 YRL--AQNSPNQSVKQLADDYIRNDLPFYFEPITSEFELKLLDDAQRH-----QYCIGFD 331 Query: 759801 LRPTTRERYEALAKAVGGPILTPNEARRIDGYDPIEGGDRLNPAPNMTRSEET 759959 + + AV G + T NE R G P++ PNM R + T Sbjct: 332 TKSVNGLPIADVNTAVNGGLWTGNEGRAELGKKPLKD-------PNMDRIQST 377 >ref|NP_944901.1|unknown Length = 742 Score = 43.1 bits (100), Expect = 0.038 Identities = 50/168 (29%), Positives = 70/168 (41%), Gaps = 23/168 (13%) Frame = +1 Query: 419905 GAD--RALRWIEDFATRTPLQLNDTVAAYARLKAFGLDPTKG--AMQALVDTMAA----T 420060 GAD +A + FA + DT+ Y+ A G PT G Q A Sbjct: 278 GADTQQARMFAASFAHQIGQNYTDTMKQYSNFAA-GAQPTLGFQGTQEFYKNAAMFARIR 336 Query: 420061 GGGAEQLDGLVLALGQAWTKGKLQGEEAL-QMLERGVPVWDLLGAKMGKTAAELQEMASK 420237 G E L G+++A Q +KGK+Q EE Q+ +R L +GKT EL ++ Sbjct: 337 GATDEDLKGIMVAFQQMASKGKIQAEELRGQLGDRLAGAVQLFADAIGKTPQELDKLMKD 396 Query: 420238 GQLGRKEI-ELLIEAMAE------------KNKGASEGMAKT-WDGIL 420339 G+L +++ + E MAE K S G AK WD L Sbjct: 397 GKLLAQDVLPKVSERMAELVKQAGGMNAVSKQTATSMGQAKAMWDNTL 444 >ref|NP_945240.1|integrase Length = 380 Score = 43.1 bits (100), Expect = 0.038 Identities = 19/57 (33%), Positives = 30/57 (52%) Frame = +1 Query: 923608 DVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAADALE 923778 ++T H RHT +AE VP+ I +GHS+ + T+ +Y + Q AD +E Sbjct: 322 NLTSHIFRHTLVSRLAENNVPLKAIMDRVGHSDAKTTTQIYTHITKQMKSTVADVME 378 >ref|NP_049482.1|serine Length = 348 Score = 43.1 bits (100), Expect = 0.038 Identities = 28/92 (30%), Positives = 50/92 (54%) Frame = +3 Query: 173913 LVRVRGAFEKFGTAYCAMDFIEGEPLSRLAQATLQRTGFIAEDLLRSFLAPICLALETVH 174092 +V+V+ A + Y AM F L++L +++ + +++R + L +H Sbjct: 70 IVQVQYAAQCESNIYIAMPFYHNGSLNQL----MKKNNLTSREIIR-YSIQFLSGLYHIH 124 Query: 174093 STNLVHRDVKPANIMISRRDQQPILIDFGAAR 174188 S L+H D+KP NIMIS R+ + +L DFG ++ Sbjct: 125 SKGLMHFDIKPNNIMISNRN-EAMLSDFGLSQ 155 >ref|NP_835517.1|integrase Length = 345 Score = 42.7 bits (99), Expect = 0.050 Identities = 19/41 (46%), Positives = 27/41 (65%) Frame = +1 Query: 923611 VTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYA 923733 +T H LRHT ++ GV + IS+ LGH N+ IT+SVY+ Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYS 324 >ref|NP_803356.1|integrase Length = 345 Score = 42.7 bits (99), Expect = 0.050 Identities = 19/41 (46%), Positives = 27/41 (65%) Frame = +1 Query: 923611 VTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYA 923733 +T H LRHT ++ GV + IS+ LGH N+ IT+SVY+ Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYS 324 >ref|NP_944277.1|hypothetical protein Length = 130 Score = 42.4 bits (98), Expect = 0.066 Identities = 19/38 (50%), Positives = 27/38 (71%) Frame = -1 Query: 375977 LSHMMADSTAELLDMADRIGLDRRHLQHAGTGREHFDI 375864 +SHM+AD+T EL+ +A IG+ + +QH G EHFDI Sbjct: 21 MSHMIADTTEELIALARAIGVRPKWIQHRGEPGEHFDI 58 >ref|NP_047971.2|gp26 Length = 174 Score = 42.4 bits (98), Expect = 0.066 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Frame = +3 Query: 471447 PLADKVYHTLYTRISNGDYPPNQKLPPEMQLAEELGVSRPVLRAALERLRDEGI--VHSR 471620 P Y + I+ G Y P KLP E + E+LG+ R LR L +L EGI VH R Sbjct: 21 PKTQAAYVIISGWIATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGILEVHQR 80 Score = 42.4 bits (98), Expect = 0.066 Identities = 18/46 (39%), Positives = 29/46 (63%) Frame = -3 Query: 772455 LAGRIERGDYAVGDKIPIEAQLCEMYNVSRTVVREAIATLRSEGLV 772318 ++G I G Y GDK+P E +CE + RT +R+ +A L +EG++ Sbjct: 30 ISGWIATGRYGPGDKLPSERAMCEDLGIGRTALRQVLAKLVAEGIL 75 >ref|NP_813725.1|gp9.1 Length = 166 Score = 42.4 bits (98), Expect = 0.066 Identities = 42/148 (28%), Positives = 54/148 (36%), Gaps = 1/148 (0%) Frame = -1 Query: 887069 GFDVAAAVEIDPVHCAVHKFNFPDTAVIPRSVVGLTAEEIRESAGIGNRPIDCVFGGPPC 886890 G V E+ C V K+ FPD I V E++R +D + G PC Sbjct: 22 GDKVTVVAEVHKAACEVMKYRFPDAPNI-GDVRHARWEDLRGE-------VDTITAGFPC 73 Query: 886889 QGFSLIGHRA-LEDPRNSXXXXXXXXXXXLDARTFVFENVKGLTVGSHRTFLSELVAAFG 886713 Q S G RA ++ R+ + R ENV + LS L Sbjct: 74 QDISNAGKRAGIQGERSGIWFNIADAIRIIRPRYVYLENVGAIRNRGQAAVLSSL----S 129 Query: 886712 MAGYDVRLPWKVLDAADYGTPQHRQRLF 886629 GYD W L A+D G P R R F Sbjct: 130 EIGYDA--VWTSLRASDIGAPHERLRWF 155 >ref|NP_047129.1|putative tail tape measure protein Length = 916 Score = 42.4 bits (98), Expect = 0.066 Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 13/161 (8%) Frame = +1 Query: 419890 EGSAEGADRALRWIEDFATRTPLQLNDTVAAYARLKAFGLDPTKGAM---QALVDTMAAT 420060 +G+ + D ++ A T DT+ G D K A+ +ALV A Sbjct: 197 KGNGKDFDYVSNSMQKLARDTNANSEDTLKLSTTFIGLG-DSAKTAVSKTEALVKANQAF 255 Query: 420061 GGGAEQLDGLVLALGQAWTKGKLQGEEALQMLERGVPVWDLLGAKMGKTAAEL------- 420219 GG E L G+V A GQ GK+ E Q+ + LGA + T ++ Sbjct: 256 GGTGENLKGVVQAYGQMSAAGKVTAENINQLTDNNT----ALGASLKDTVMQMNPQLKQY 311 Query: 420220 ---QEMASKGQLGRKEIELLIEAMAEKNKGASEGMAKTWDG 420333 E S G + ++ ++ A+ + A++ + TW G Sbjct: 312 GSFNEAVSAGAVSMDMLDKAMQKAADGSSSATKTIRDTWSG 352 >ref|NP_061500.1|portal protein Length = 434 Score = 42.0 bits (97), Expect = 0.086 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 2/149 (1%) Frame = +3 Query: 759501 PILGEGEDVKTLDMKAADQELLGSRKFDREQIAAIYRVPPAKLQMMEYGVK--ANGEQQA 759674 P+L +G +T+ + D +LL +R+ +I + VPP + + G EQQ Sbjct: 257 PVLEQGITPETIGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDKGSNWGTGLEQQM 316 Query: 759675 IDYLTDCLLHWAKQVEDQLALGVLTEAERRAGLFFRHDFGALLRPTTRERYEALAKAVGG 759854 + +LT + Q++ + +LT A R + L+ + R + Sbjct: 317 LAFLTFSISSITNQIQQCVNKRLLT-APERIRYYAEFSLEGFLKADSAGRAAWYSTMAQN 375 Query: 759855 PILTPNEARRIDGYDPIEGGDRLNPAPNM 759941 +T NE RR + + GGD L N+ Sbjct: 376 GFMTRNEGRRKENLPELPGGDILTVQSNL 404 >ref|NP_817358.1|gp20 Length = 628 Score = 42.0 bits (97), Expect = 0.086 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 5/143 (3%) Frame = +1 Query: 303487 RPMETGTRLPICSISKQFTCGALLDTLGD-TAAYDARVAEFLPQF-EGPLPTLRQLCDNQ 303660 RP+ + S +K FT A + D + +++P G T+ + + Sbjct: 123 RPLTLDDHFRMGSSTKMFTAIAFFQAVDKGLITLDDTLEQYVPGIPNGTAITMGHMLSMR 182 Query: 303661 SGLRDYWALTVLQGAEAAQTFRREDALPLIARMK-TGHFPPGTAYSYCNCNFRIVSEILE 303837 SG+ +Y A T+ A ++ MK +F PGT Y Y N NF ++ +LE Sbjct: 183 SGIAEYTAGINALWITLFPTWPWTGAKDFLSTMKGPSNFYPGTDYLYTNSNFALIGMVLE 242 Query: 303838 --SETGRALRDLYAERIFGPAGM 303900 R ++ ++ E I P G+ Sbjct: 243 IVDPAHRPIKQIFKEDIIDPLGL 265 >ref|NP_945098.1|gp67 Length = 433 Score = 42.0 bits (97), Expect = 0.086 Identities = 33/117 (28%), Positives = 45/117 (38%), Gaps = 12/117 (10%) Frame = -1 Query: 886919 IDCVFGGPPCQGFSLIGHRA-LEDPRNSXXXXXXXXXXXLDARTFVFENVKGLTVGSHRT 886743 +DCV G PCQ S+ G RA L+ R+ A V ENV G+ + Sbjct: 79 VDCVIAGFPCQDLSVAGRRAGLDGKRSGLFFRVADIADDCGAWLLVLENVSGIISATASV 138 Query: 886742 F-----------LSELVAAFGMAGYDVRLPWKVLDAADYGTPQHRQRLFLIGAKRGE 886605 S +V G+D W L A+D G R+R F I + G+ Sbjct: 139 VDETEGELAERAASRVVGELADRGWDAE--WTHLRASDVGGSHQRKRWFCIAWRMGD 193 >ref|NP_818340.1|gp39 Length = 628 Score = 41.6 bits (96), Expect = 0.11 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 5/143 (3%) Frame = +1 Query: 303487 RPMETGTRLPICSISKQFTCGALLDTLGD-TAAYDARVAEFLPQF-EGPLPTLRQLCDNQ 303660 RP+ + S +K FT A + D + +++P G T+ + + Sbjct: 123 RPLTLDDHFRMGSSTKMFTAIAFFQAVDKGLITLDDTLEQYVPGIPNGTAITMGHMLSMR 182 Query: 303661 SGLRDYWALTVLQGAEAAQTFRREDALPLIARMK-TGHFPPGTAYSYCNCNFRIVSEILE 303837 SG+ +Y A T+ A + MK +F PGT Y Y N NF ++ +LE Sbjct: 183 SGIAEYTAGINALWITLFPTWPWTGAKDFLGSMKGPSNFYPGTDYLYTNSNFALIGMVLE 242 Query: 303838 --SETGRALRDLYAERIFGPAGM 303900 R ++ ++ E I P G+ Sbjct: 243 IVDPAHRPIKQIFKEDIIDPLGL 265 >ref|NP_695079.1|putative integrase Length = 359 Score = 41.2 bits (95), Expect = 0.15 Identities = 18/42 (42%), Positives = 27/42 (64%) Frame = +1 Query: 923608 DVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYA 923733 +V +H+LRHT A ++ + + +SQ LGH N+ IT VYA Sbjct: 288 EVRVHSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEVYA 329 >ref|NP_049990.1|integrase Length = 359 Score = 41.2 bits (95), Expect = 0.15 Identities = 18/42 (42%), Positives = 27/42 (64%) Frame = +1 Query: 923608 DVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYA 923733 +V +H+LRHT A ++ + + +SQ LGH N+ IT VYA Sbjct: 288 EVRVHSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEVYA 329 >ref|NP_817742.1|gp65 Length = 513 Score = 41.2 bits (95), Expect = 0.15 Identities = 21/54 (38%), Positives = 30/54 (55%) Frame = -1 Query: 886154 RCITVREMARLHGFPDWFRLHATKWHGGRQVGNSVPPPLARAVASEIVRALGVA 885993 R + RE+AR FP +R+ + RQ GN+V PP AR + + +LGVA Sbjct: 459 RMLEPREIARAMDFPAEYRILGNRREQVRQAGNAVTPPAARDLVGVVAESLGVA 512 >ref|NP_958506.1|putative integrase Length = 391 Score = 41.2 bits (95), Expect = 0.15 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Frame = +1 Query: 923602 LLDVTLHTLRHT-AAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAADALE 923778 L +T+H RHT A + +AE V + LGH N+Q+T +Y + ++ A +AL+ Sbjct: 328 LRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHINKKNTEDAVNALK 387 >ref|NP_958209.1|gene 33 protein Length = 322 Score = 41.2 bits (95), Expect = 0.15 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%) Frame = +1 Query: 935566 LERRHDRGALARRVEQDRGRRAAIHAAVIDPGEHDERARRIEPVGDRQQERHRQR---RA 935736 +E H+ L R E DR R A A + EH+ER +R R + + + A Sbjct: 133 IESDHEIAILMDR-EFDRQREEARLKAEQEKREHEERLKREAEEKARAEAEAKAKAEIEA 191 Query: 935737 DARKHPHRRA--ERDPHQRIEQDHRIERDRETLQEEVERAHSASVDQPLGRARGQVQR 935904 AR+ +A ER +RIE + R +R+ + E ER A+++ +A+ + +R Sbjct: 192 AARREAEAKAAAERAERERIEAEQRAQREAKEAAERAEREKQAAIEAERRKAQEEAER 249 >ref|NP_958267.1|hypothetical protein Length = 416 Score = 41.2 bits (95), Expect = 0.15 Identities = 80/283 (28%), Positives = 94/283 (33%), Gaps = 9/283 (3%) Frame = -2 Query: 303058 REAHAHLEGQR-RAHEMRRGQLRHRSRELRAVGHDREPPEKGQPHEEPDGP---APGE-- 302897 R H R RAH ++R R DR P H EPD P AP Sbjct: 12 RPPHTRTPAPRTRAHPRAHRRVRTRPHPHLGPARDRSPD-----HPEPDHPCRRAPSRPA 66 Query: 302896 --PHRQRTAARDRHGERRRAAAPDAVREDPAQHAAGRARGDHGEGQEREVAEPQPRLRRR 302723 P R AR R R APD PA H A E P LR R Sbjct: 67 AGPRRHPPVARTRPRTRAPECAPD---PGPAVHPAAPGCAPAAPA----APEYAPALRPR 119 Query: 302722 AGPGEKPAPDGIELPHVAEIAEVRGHHRAVAQDAEGLAEVDGGGPAERMRPLAQRQPEDR 302543 A ++ A H R RAV GP R+R EDR Sbjct: 120 APECDRGA-------HHLRTRAPRTRTRAVPL-----------GPGARVR----TPVEDR 157 Query: 302542 RGQEAEESGRPDHETPVE-RLAQAPHQMRQSGAQRERADEAAQSQPAALPEPGGHEPDRG 302366 R RPD V+ RL H R+ GA+R + + A P PG R Sbjct: 158 R--RTRRRRRPDPRRRVQPRLGVGVH--RRRGARR----VGRRVRVRARPGPGAARRPRR 209 Query: 302365 RVDAGQSRPGQHACRNRRGGAGLQQKKQCGEPRDRRCRSHQPV 302237 R R A R RR +++ PR RR RS P+ Sbjct: 210 RPHPEHPR----AVRPRRRTGRRHRRRASLRPRHRRHRSTPPM 248 Score = 40.0 bits (92), Expect = 0.33 Identities = 22/45 (48%), Positives = 24/45 (53%) Frame = +2 Query: 614135 AERLGRPVRVLHRPGPDRAREPVDRVIGRRHRLVEALHRDGRQHR 614269 A R+GR VRV RPGP AR P R R V R GR+HR Sbjct: 186 ARRVGRRVRVRARPGPGAARRPRRRPHPEHPRAVRPRRRTGRRHR 230 Score = 39.7 bits (91), Expect = 0.42 Identities = 40/120 (33%), Positives = 45/120 (37%), Gaps = 10/120 (8%) Frame = -2 Query: 409117 RPRRGAQARTREPALR-----RGHLRI----FADLALGRGFQPD-PPASRKSARARDRGS 408968 R RR TR PA R R H R+ L R PD P RA R + Sbjct: 7 RLRRARPPHTRTPAPRTRAHPRAHRRVRTRPHPHLGPARDRSPDHPEPDHPCRRAPSRPA 66 Query: 408967 AGLHRRPPRVRPAMHGRDPGDRREPGHARHVLRPRQAHASQPSARHLPRQHGAAFPRAAD 408788 AG R PP R R P +PG A H P A P+A P A PRA + Sbjct: 67 AGPRRHPPVARTRPRTRAPECAPDPGPAVHPAAPGCA----PAAPAAPEYAPALRPRAPE 122 >ref|YP_195257.1|virion structural protein Length = 560 Score = 41.2 bits (95), Expect = 0.15 Identities = 54/198 (27%), Positives = 74/198 (37%), Gaps = 6/198 (3%) Frame = -2 Query: 628750 TEAVDTPAALTGSISASDLHGGAPGEGGTLSYGVQGGVSANGFSVLTLPYGTLSVNQSTG 628571 T V P +T ++S ++ G TL + V G V + G +VN ST Sbjct: 300 TVTVYQPPTITITLSPEEIING---NSSTLQWEVGGDVDT---VTIDQGIGDANVNGSTS 353 Query: 628570 AYSFLPNPTALNSLAEGAEANFSFTLTVSDGQGGTQTAPLDITFTGANDVPVVSAQTGT- 628394 + + G S TLTV QT L +TF G D V T T Sbjct: 354 VSPSETTTYTITASGLGGTLTKSITLTVY------QTPELTVTFPGTYDYGVNQTMTVTT 407 Query: 628393 -----AVEASGLNNNVAGSAATGSLLTGPNAATDIDGDEISVVGVRTGGQSETGTEGVWT 628229 AV N GS++T S + PN +++ GDEI+ + G E + Sbjct: 408 RYASVAVRVDLTYNYQGGSSSTDSYILTPNGSSE-SGDEITETFTPLIEWNTLGPETIDF 466 Query: 628228 DGTITLQGTYGTLTLNED 628175 T T G T T ED Sbjct: 467 LVTATGLGGEQTRTTTED 484 >ref|YP_024716.1|gp43 Length = 128 Score = 40.8 bits (94), Expect = 0.19 Identities = 35/111 (31%), Positives = 47/111 (42%), Gaps = 6/111 (5%) Frame = -3 Query: 724776 AARRSQGCGSKGTRLRGWACGDAGGSCSPDGRAPH--LGRARDEAGNRHAGHARFCEEGC 724603 A R +G G++ R R A +GG PH L R RDE G AGH +G Sbjct: 8 ALGRRRGAGNQAARRRDKAILMSGGPAPEPAAKPHDGLDRRRDEVG---AGH-----DGR 59 Query: 724602 PDEGQHHPHRQCRRQGGDRFTHRP----DPQPDRGYDVGLQQGEVAGTSGE 724462 P+EG+ +R + H P D QPD +D G + V G+ Sbjct: 60 PEEGEAE-----KRHDAEHDRHGPPGQLDEQPDGEHDAGNRDHGVGNAFGD 105 >ref|NP_795489.1|putative integrase Length = 380 Score = 40.4 bits (93), Expect = 0.25 Identities = 17/56 (30%), Positives = 30/56 (53%) Frame = +1 Query: 923611 VTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAADALE 923778 +T H RHT +AE VP+ I + +GH++ + T+ +Y + + AD +E Sbjct: 323 LTSHIFRHTLISRLAENNVPLKSIMERVGHADAKTTAQIYTHVTKKMKSSVADIME 378 >ref|NP_944253.1|hypothetical protein; similar to DNA methyltransferase amino terminus Length = 205 Score = 40.4 bits (93), Expect = 0.25 Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 30/132 (22%) Frame = -1 Query: 886916 DCVFGGPPCQGFSLIGHR-ALEDPRNSXXXXXXXXXXXLD---------ARTFVFENVKG 886767 D + GG PCQ FSL G R +L D R + +D V+ENV G Sbjct: 67 DVLVGGTPCQAFSLAGLRESLSDERGNLTLKFVELIDAIDHVRRLDGAAPAVVVWENVPG 126 Query: 886766 LTVGSHRTFLSELVAAFGMAGYDVRL--------------------PWKVLDAADYGTPQ 886647 + F L G+AG D L W+ LDA +G Q Sbjct: 127 VLSTKDNAFGCFLA---GLAGEDEPLVAPGGRWANAGCVYGPQRAVAWRTLDAQYFGVAQ 183 Query: 886646 HRQRLFLIGAKR 886611 R+R+F++ + R Sbjct: 184 RRRRVFVVASGR 195 >ref|NP_040580.1|DNA packaging protein Length = 181 Score = 40.4 bits (93), Expect = 0.25 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Frame = -2 Query: 910042 LNRAQLARAFSVSENTITKWISQGMPVMSDGQNGVAYEFRLRHCYAWRMERDARARAAKA 909863 +N+ QLA F S TI W QGMPV+ G G + W ERDA K Sbjct: 3 VNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIKWYAERDAEIENEKL 62 Query: 909862 QGD----RLAAQAAL 909830 + + R A++A L Sbjct: 63 RREVEELRQASEADL 77 >ref|NP_938251.1|putative tail component protein Length = 514 Score = 40.4 bits (93), Expect = 0.25 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 2/106 (1%) Frame = -2 Query: 899365 LRAQVDPLYAASKRYEQALETLNAAQAAGVIGDQERARTLKLLDAQ--MISADRATTAAT 899192 L A +DP+ ++ + LNAA+ G+ D KL + + ++ A A Sbjct: 145 LLAAIDPVTRELEKLDSLQARLNAARGRGIDPDVFTTYNAKLQEQRDRLLGTSDAMAVAG 204 Query: 899191 LGIGRFTPAITNASFQVQDFAVQVASGQSAMIAFTQQAPQLLGAFG 899054 + G++ A+ Q+ D +ASG + QQ Q+ +FG Sbjct: 205 ISAGQYRQAMRQLPAQITDVVTSLASGMPLWMVAIQQGGQIKDSFG 250 >ref|NP_958556.1|putative integrase Length = 391 Score = 40.0 bits (92), Expect = 0.33 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Frame = +1 Query: 923602 LLDVTLHTLRHT-AAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAADALE 923778 L +T+H RHT A + +AE V + LGH N+Q+T +Y + ++ A +AL+ Sbjct: 328 LRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHVNNKNKEDAVNALK 387 >ref|YP_195256.1|hypothetical protein Length = 567 Score = 40.0 bits (92), Expect = 0.33 Identities = 79/338 (23%), Positives = 124/338 (36%), Gaps = 27/338 (7%) Frame = -2 Query: 628834 SATGSITVTPVNDAPVFTAA--PVALTVAD-TEAVDTPAALTGSISASDLHGGAPGEGGT 628664 +A+GS TV+P A P +V + T V P A + S SA PG T Sbjct: 193 AASGSRTVSPTTTTTYTLTAVGPAGTSVREVTIDVAPPDAPSVSFSADPTSYINPGST-T 251 Query: 628663 LSYGVQGGVSANGFSVLTLPYGTLSVNQSTGAYSFLPNPTALNSLAEGAEANFSFTLTVS 628484 L + V GF + ++ S+N G + +A S+ +T++ + Sbjct: 252 LRWDV------TGFQITSI-----SINNDIGELT-----SASGSIVVSPSVTTDYTISAT 295 Query: 628483 DGQGGTQTAPLDITFTGANDVPVVS----AQTGTAVEASGLNNNVAGSAATGSLLTGPNA 628316 + GGT T + IT + ++ GT+ S L NV G S+ G Sbjct: 296 NA-GGTTTRSVTITVYQPPSIDFIADPDEIMGGTS---SVLRWNVTGDVDDVSIDQGIGP 351 Query: 628315 ATDIDGDEISVVGVRTGGQSETGTEGVWTDGTITLQGTYGTLTLNEDGSWSYAADDDNPT 628136 +S T S +G G T + + LT+ G++ Y D + Sbjct: 352 VLITGTRNVSPAETTTYTLSASGLGGSATASVTIIVALFPELTVTFPGTYDYGVDKEMVV 411 Query: 628135 VDG-------LTGPTDTLEETFT---YTVTD----ANGATASQELTVTISGRN------D 628016 +T + L+ET T Y +T + GA Q T + N D Sbjct: 412 TTRYANISVIITFQLNYLDETTTSVDYILTSNDSASTGAEIEQRYTPEVPWNNFGPSTID 471 Query: 628015 ALNVSSSIGTDISTGEDADTQIDLTGLVFEDPDLGSEI 627902 V+S G + S E ++ +IDL PD + I Sbjct: 472 VFVVASGDGGEASASETSEVRIDLNPDFIALPDTSNLI 509 >ref|NP_490621.1|hypothetical protein Length = 391 Score = 40.0 bits (92), Expect = 0.33 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = +1 Query: 418447 WIDPELNTEATMKAGKLFLDFDIEPPAPLEHLT 418545 W DP +N + T+KAGKL + +D P PLE LT Sbjct: 340 WYDPNVNDKDTLKAGKLRITYDYTPVPPLEDLT 372 >ref|NP_945295.1|tail length tape measure protein Length = 748 Score = 40.0 bits (92), Expect = 0.33 Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 3/198 (1%) Frame = +1 Query: 420061 GGGAEQLDGLVLALGQAWTKGKLQGEEALQMLERGVPVWDLLGAKMGKTAAELQEMASKG 420240 G EQ L + QA G L+G+E M+E V L +G + +L+ MA G Sbjct: 206 GANLEQQKAGTLQITQALASGVLRGDEFNSMMENAPLVAQKLARHLGVSVGQLRAMAKDG 265 Query: 420241 QLGRKEIELLIEAMAEKNKGASEGMAKTWDGILS---NVLDHWGRFQRMVMASGVFDFLK 420411 QL ++ + A + M T+ +++ NV + FQ ++ A F Sbjct: 266 QLTGDTLKNALLGSAVETNAEFAKMPMTFADMMTQVGNVASY--AFQPLIQAWQEFINST 323 Query: 420412 GRLQEILGTLNAMAEDGRLQLWADEVARVILRTLEAMWAFAGQAVAAWNLLVPVVAQAAD 420591 + G AM G++ LW + A W + + + + ++A A Sbjct: 324 AGQNFMAGLETAMFAIGQIALW-------LFNLFVAGWNWVTENINIVMTALILLAAVAL 376 Query: 420592 LLGGWDRLAWFAASLLMG 420645 + G +A F A L+ G Sbjct: 377 IAG----VAMFVAGLMAG 390 >ref|NP_463492.1|putative integrase Length = 452 Score = 40.0 bits (92), Expect = 0.33 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 14/190 (7%) Frame = -3 Query: 706383 RAAIYARYSTELQ-DGRSIDDQV----ALCREHAARSGLTVVATYDDRAKTSASIFGRDG 706219 +AAIY R ST+ Q + SI Q ALCR V + D S S R Sbjct: 2 KAAIYIRVSTQEQVENYSIQAQTEKLTALCRS----KDWDVYDIFIDGGY-SGSNMNRPA 56 Query: 706218 LARMMEQARARQFDVVIVEALDRLSRDQED-LAHIHKRLSFARIDILTVHEGVADS---- 706054 L M+ ++ + D V+V LDRLSR Q D + I + ++ +++ E + S Sbjct: 57 LNEML--SKLHEIDAVVVYRLDRLSRSQRDTITLIEEYFLKNNVEFVSLSETLDTSSPFG 114 Query: 706053 -VSVGLRGLMGTMFLEALKAKTRRGLAGVIRDG---RHAGGQTYGYRGVPGEPGKREIVA 705886 +G+ + + E ++ + G I G A G+T+GY + + E A Sbjct: 115 RAMIGILSVFAQLERETIRDRMVMGKIKRIEAGLPLTTAKGRTFGYDVIDTKLYINEEEA 174 Query: 705885 HEAEIIREIF 705856 + ++I +IF Sbjct: 175 KQLQLIYDIF 184 >ref|NP_542293.1|unknown Length = 2185 Score = 39.7 bits (91), Expect = 0.42 Identities = 33/89 (37%), Positives = 42/89 (47%), Gaps = 8/89 (8%) Frame = +3 Query: 166953 DMRRPDGPDAGGVER-----LDRIISA-GDVVHVHGLAHAGPGEDAPHVGPEARVIGDLA 167114 D RP GP V+ DR +S DV A + P +D P VG RV Sbjct: 907 DAPRPSGPLGRAVQHGQQRAEDRAVSTLPDVTTAQPTAASTPADDRPEVGATVRV----D 962 Query: 167115 AVGLEEPVIGRVEPDQGDEDA--DVGLGQ 167195 A GLE P++GR+E +GDE D G G+ Sbjct: 963 AEGLE-PILGRIEAYEGDEAIVFDSGTGE 990 >ref|YP_195210.1|virion structural protein Length = 1177 Score = 39.7 bits (91), Expect = 0.42 Identities = 98/453 (21%), Positives = 170/453 (37%), Gaps = 39/453 (8%) Frame = -2 Query: 628771 VALTVADTEAVDT-PAALTGSISASDLHGGAPGEGGTLSYGVQG---GVSANGFSVLTLP 628604 ++ + DT+ + T +A+ G+ ++ D+ G T+S V G + + +T Sbjct: 169 ISSSFTDTDTITTLRSAVGGNATSGDISIAGSGST-TVSQSVDGLTITIDSTDTDTITRL 227 Query: 628603 YGTLSVNQSTGAYSFLP-NPTALNSLAEGAEANFSFTLTVSDGQGGTQTAPLDITFTGAN 628427 G N G ++ + + L+ N T+T G D+TFTG+ Sbjct: 228 RGGTGENFLAGDFTLIAGDEVTLSQTGRDITINSVDTITRLKGGATGSFKSGDVTFTGSG 287 Query: 628426 DVPVVSAQTGTAVEASGLNNNVAGSAATGSLLTGPNAATDIDGDEISV-VGVRTGGQSET 628250 V +Q G+ + ++ N T + + G N T GD + GV T QS Sbjct: 288 ATTVSQSQDGSTITIDSIDTN------TITRIRGSNGGTLTSGDVTFLGSGVTTVEQSPD 341 Query: 628249 G------------TEGVWTDGTITLQGTYGTLTLNED---------GSWSYAADDDNPTV 628133 G T G + L GT +L NE+ S ++ + T Sbjct: 342 GRTITISSTDQDTTYDAALSGGLFLSGTSFSLKNNENINDQTIVKWDSSNFQLTNSIITD 401 Query: 628132 DG--LTGPTDTLEETFTYTVTDANGATASQELTV----TISGRNDALNVS-SSIGTDIST 627974 DG +T D L T T+ N A + + ++G N + ++ ++ GT + T Sbjct: 402 DGSTVTIGGDLLVTGTTTTINTQNLVVADNNIELRRGENLTGSNGGIQLNRTTDGTGLVT 461 Query: 627973 GEDADTQIDLTGLVFEDPDLGSEIYEFAVDAGQGTLWTEGVDGLTVTGNGTGQLVLTGSA 627794 +A + +G + D GS + D TL + +D T+ G+A Sbjct: 462 SFNAMQWFE-SGGYWRTWD-GSVPHRLVTDDEIQTLTNKTLDSPTL------NFPSLGAA 513 Query: 627793 TAISEWIAANDLTYRSPVEGSGADTISLSYSEA-----GAEVRTALESIDVAVDMINDPA 627629 TA S N L++ S V S +S+ S+A TA + V + N Sbjct: 514 TATS----INGLSFGSTVSAS----LSVGNSKAISFNNSVTFNTAQNDSTITVQLSNGGT 565 Query: 627628 VVDVNGSVTTQGSAGVAEVAQVTFLSTGTAQVL 627530 V + ++ S ++ V STG + + Sbjct: 566 VAYTSNTLAVFASTTSNQLRGVISDSTGVGKAV 598 Database: Phage.aa Posted date: Jul 11, 2005 10:35 AM Number of letters in database: 3,019,461 Number of sequences in database: 14,420 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,663,881,462 Number of Sequences: 14420 Number of extensions: 72934266 Number of successful extensions: 288223 Number of sequences better than 0.5: 234 Number of HSP's better than 0.5 without gapping: 13684 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 286948 length of database: 3,019,461 effective HSP length: 136 effective length of database: 1,058,341 effective search space used: 332534975564 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)